Query 012227
Match_columns 468
No_of_seqs 347 out of 1907
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.8 2E-19 6.7E-24 173.6 25.0 252 170-449 12-287 (306)
2 2woz_A Kelch repeat and BTB do 99.8 7.6E-19 2.6E-23 170.5 28.2 254 183-465 26-316 (318)
3 4asc_A Kelch repeat and BTB do 99.8 7.5E-19 2.5E-23 170.3 27.9 234 182-442 14-285 (315)
4 1zgk_A Kelch-like ECH-associat 99.8 1E-18 3.5E-23 168.8 23.9 250 171-448 26-301 (308)
5 2xn4_A Kelch-like protein 2; s 99.8 1.7E-18 5.7E-23 166.7 24.1 238 182-447 31-290 (302)
6 2vpj_A Kelch-like protein 12; 99.8 2.6E-18 8.9E-23 165.2 21.6 238 182-447 32-291 (301)
7 3ii7_A Kelch-like protein 7; p 99.8 1E-16 3.5E-21 154.5 23.7 200 224-448 23-239 (306)
8 2uvk_A YJHT; unknown function, 99.7 1.5E-16 5.3E-21 156.7 21.8 216 210-448 15-308 (357)
9 2xn4_A Kelch-like protein 2; s 99.7 2.8E-16 9.6E-21 151.1 23.0 199 225-448 30-243 (302)
10 1zgk_A Kelch-like ECH-associat 99.7 2.5E-16 8.4E-21 152.1 22.6 198 225-448 39-254 (308)
11 4asc_A Kelch repeat and BTB do 99.7 2.1E-16 7.3E-21 153.0 21.1 198 225-448 13-235 (315)
12 2vpj_A Kelch-like protein 12; 99.7 7.1E-16 2.4E-20 148.1 23.2 198 225-448 31-245 (301)
13 2woz_A Kelch repeat and BTB do 99.7 6.6E-16 2.3E-20 149.7 21.7 206 216-448 17-245 (318)
14 2uvk_A YJHT; unknown function, 99.7 3.6E-15 1.2E-19 146.8 23.9 249 171-444 21-352 (357)
15 1k3i_A Galactose oxidase precu 99.5 1.3E-13 4.3E-18 147.1 17.9 242 183-448 168-511 (656)
16 2zwa_A Leucine carboxyl methyl 99.5 4.5E-13 1.5E-17 143.4 19.6 207 213-441 396-642 (695)
17 2zwa_A Leucine carboxyl methyl 99.3 1.2E-11 4.1E-16 132.3 15.6 196 183-394 414-646 (695)
18 1k3i_A Galactose oxidase precu 99.2 7E-11 2.4E-15 125.9 13.8 147 227-388 168-329 (656)
19 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.9E-10 9.9E-15 78.6 3.3 44 117-160 7-50 (53)
20 3v7d_B Cell division control p 98.7 5.8E-06 2E-10 83.2 26.4 42 117-158 13-55 (464)
21 2e31_A FBS1, F-box only protei 98.7 4.7E-09 1.6E-13 98.6 2.6 52 113-164 45-97 (297)
22 2ovr_B FBW7, F-BOX/WD repeat p 98.7 2.1E-06 7.2E-11 86.2 21.9 233 118-379 18-267 (445)
23 1p22_A F-BOX/WD-repeat protein 98.6 5.8E-07 2E-11 90.2 15.5 43 118-160 10-56 (435)
24 3l2o_B F-box only protein 4; s 97.7 1.3E-05 4.5E-10 74.4 2.7 47 118-164 4-50 (312)
25 2ast_B S-phase kinase-associat 97.4 4.3E-05 1.5E-09 73.6 2.2 45 116-160 6-50 (336)
26 3dsm_A Uncharacterized protein 97.3 0.038 1.3E-06 52.6 21.6 198 212-438 51-257 (328)
27 2p1m_B Transport inhibitor res 97.2 0.00015 5.3E-09 75.5 3.0 39 114-152 1-40 (594)
28 3dsm_A Uncharacterized protein 96.7 0.31 1.1E-05 46.2 22.3 186 224-439 16-217 (328)
29 3mbr_X Glutamine cyclotransfer 96.6 0.29 1E-05 44.3 19.4 182 253-463 24-214 (243)
30 3hfq_A Uncharacterized protein 96.2 0.14 4.8E-06 48.5 16.1 218 212-442 48-280 (347)
31 3nol_A Glutamine cyclotransfer 96.1 0.32 1.1E-05 44.5 16.9 173 267-463 54-235 (262)
32 3jrp_A Fusion protein of prote 96.0 0.4 1.4E-05 45.4 18.3 187 224-435 32-241 (379)
33 4gga_A P55CDC, cell division c 95.7 0.26 8.9E-06 48.3 16.1 146 212-381 114-262 (420)
34 2z2n_A Virginiamycin B lyase; 95.7 1.2 4.2E-05 40.4 20.9 187 212-437 107-298 (299)
35 2qc5_A Streptogramin B lactona 95.6 1 3.5E-05 41.0 18.9 191 212-440 70-265 (300)
36 3mbr_X Glutamine cyclotransfer 95.5 0.22 7.5E-06 45.2 13.3 108 310-437 27-136 (243)
37 3nok_A Glutaminyl cyclase; bet 95.5 0.85 2.9E-05 41.8 17.0 173 267-463 66-245 (268)
38 3ogk_B Coronatine-insensitive 95.4 0.0047 1.6E-07 64.1 1.8 33 120-152 14-47 (592)
39 1l0q_A Surface layer protein; 95.2 0.82 2.8E-05 43.7 17.4 189 214-438 43-237 (391)
40 2aq5_A Coronin-1A; WD40 repeat 95.1 2.4 8.2E-05 40.8 20.4 208 214-442 93-309 (402)
41 1ijq_A LDL receptor, low-densi 95.1 2.3 7.7E-05 39.9 22.5 192 210-436 37-240 (316)
42 1rwi_B Serine/threonine-protei 94.9 2 6.8E-05 38.5 18.1 193 212-440 32-228 (270)
43 1q7f_A NHL, brain tumor CG1071 94.9 2.2 7.4E-05 38.8 21.0 200 212-441 38-245 (286)
44 1ri6_A Putative isomerase YBHE 94.7 1.9 6.5E-05 39.9 17.9 205 213-445 94-321 (343)
45 3jro_A Fusion protein of prote 94.4 0.6 2E-05 49.8 15.2 187 224-435 30-239 (753)
46 2iwa_A Glutamine cyclotransfer 94.4 2.3 7.9E-05 39.0 17.1 160 253-439 24-186 (266)
47 3p5b_L Low density lipoprotein 94.4 4 0.00014 39.7 20.3 192 210-435 119-321 (400)
48 1npe_A Nidogen, entactin; glyc 94.4 2.8 9.4E-05 37.9 21.3 195 210-441 43-246 (267)
49 1l0q_A Surface layer protein; 94.4 1.4 4.8E-05 42.1 16.6 188 215-440 2-195 (391)
50 3no2_A Uncharacterized protein 94.3 1.2 4E-05 41.1 15.2 187 213-437 3-198 (276)
51 3nol_A Glutamine cyclotransfer 94.3 0.4 1.4E-05 43.9 11.4 108 311-438 50-159 (262)
52 3v65_B Low-density lipoprotein 94.1 4.5 0.00015 39.1 20.2 195 210-440 123-325 (386)
53 2qc5_A Streptogramin B lactona 94.0 3.3 0.00011 37.4 20.5 194 210-440 26-223 (300)
54 4ggc_A P55CDC, cell division c 93.9 1.1 3.8E-05 41.1 14.3 67 212-286 34-100 (318)
55 3q7m_A Lipoprotein YFGL, BAMB; 93.9 2.8 9.6E-05 39.9 17.7 108 213-338 52-169 (376)
56 3e5z_A Putative gluconolactona 93.7 4 0.00014 37.3 19.5 190 211-439 76-291 (296)
57 2z2n_A Virginiamycin B lyase; 93.7 3.8 0.00013 37.0 22.3 217 184-440 39-260 (299)
58 3m0c_C LDL receptor, low-densi 93.7 3.5 0.00012 44.2 19.2 190 210-435 431-633 (791)
59 3nok_A Glutaminyl cyclase; bet 93.6 0.33 1.1E-05 44.5 9.6 107 311-438 62-168 (268)
60 3jrp_A Fusion protein of prote 93.6 2.5 8.6E-05 39.6 16.5 205 215-443 69-297 (379)
61 3u4y_A Uncharacterized protein 93.4 4.2 0.00014 37.5 17.5 192 226-446 109-316 (331)
62 4aez_A CDC20, WD repeat-contai 93.4 1.9 6.3E-05 41.6 15.4 183 225-438 113-297 (401)
63 3q7m_A Lipoprotein YFGL, BAMB; 93.2 5.9 0.0002 37.6 21.1 186 210-439 99-301 (376)
64 3v64_C Agrin; beta propeller, 93.0 6.4 0.00022 37.4 18.9 189 210-435 80-276 (349)
65 1rwi_B Serine/threonine-protei 92.9 4.9 0.00017 35.8 18.6 185 213-436 76-266 (270)
66 2iwa_A Glutamine cyclotransfer 92.8 1.2 4.1E-05 40.9 12.1 105 314-437 32-138 (266)
67 2ovr_B FBW7, F-BOX/WD repeat p 92.6 8 0.00027 37.5 21.5 133 223-380 257-391 (445)
68 1k8k_C P40, ARP2/3 complex 41 92.1 4.4 0.00015 37.9 15.9 149 214-379 19-172 (372)
69 2ojh_A Uncharacterized protein 92.0 6.3 0.00021 35.1 17.2 187 224-442 21-214 (297)
70 2pm7_B Protein transport prote 91.9 7.3 0.00025 35.6 17.5 111 213-334 19-133 (297)
71 1erj_A Transcriptional repress 91.9 7.5 0.00026 37.2 17.5 147 212-380 132-287 (393)
72 3bws_A Protein LP49; two-domai 91.9 9.2 0.00032 36.7 21.9 196 214-439 133-339 (433)
73 3v9f_A Two-component system se 91.9 15 0.00051 39.0 22.2 197 213-440 416-617 (781)
74 3m0c_C LDL receptor, low-densi 91.8 3.7 0.00013 43.9 16.2 148 210-381 478-631 (791)
75 3g4e_A Regucalcin; six bladed 91.6 8 0.00028 35.4 21.5 193 213-438 23-233 (297)
76 3vgz_A Uncharacterized protein 91.1 9.5 0.00032 35.2 23.2 200 210-439 96-308 (353)
77 3p5b_L Low density lipoprotein 91.0 7 0.00024 38.0 16.2 148 210-381 166-319 (400)
78 3v65_B Low-density lipoprotein 91.0 10 0.00036 36.4 17.4 140 214-381 87-233 (386)
79 3dwl_C Actin-related protein 2 91.0 10 0.00035 35.5 17.6 207 212-444 64-291 (377)
80 3dwl_C Actin-related protein 2 91.0 1.4 4.7E-05 41.8 10.9 137 223-379 31-176 (377)
81 2pm7_B Protein transport prote 90.9 9.2 0.00032 34.8 18.3 211 215-442 67-294 (297)
82 1gxr_A ESG1, transducin-like e 90.9 9.3 0.00032 34.8 17.5 196 213-441 61-262 (337)
83 2vdu_B TRNA (guanine-N(7)-)-me 90.8 13 0.00043 36.3 21.6 204 214-440 160-399 (450)
84 3lrv_A PRE-mRNA-splicing facto 90.6 11 0.00037 35.1 18.7 155 214-387 138-299 (343)
85 3hfq_A Uncharacterized protein 90.6 11 0.00037 35.0 17.7 205 214-441 97-326 (347)
86 3sov_A LRP-6, low-density lipo 90.5 11 0.00038 35.2 19.2 188 212-436 44-240 (318)
87 1pjx_A Dfpase, DIISOPROPYLFLUO 90.4 4 0.00014 37.3 13.3 198 213-436 27-258 (314)
88 4g56_B MGC81050 protein; prote 90.3 7.4 0.00025 36.8 15.5 110 212-335 148-260 (357)
89 3u4y_A Uncharacterized protein 90.2 10 0.00035 34.8 16.1 191 213-437 8-210 (331)
90 4aow_A Guanine nucleotide-bind 90.2 8.8 0.0003 35.2 15.7 102 222-337 147-250 (340)
91 3hrp_A Uncharacterized protein 90.1 11 0.00036 36.7 16.6 205 212-442 139-362 (409)
92 3vl1_A 26S proteasome regulato 89.9 14 0.00047 35.2 17.8 110 212-338 106-217 (420)
93 3ei3_B DNA damage-binding prot 89.9 13 0.00045 34.9 19.5 186 224-436 95-284 (383)
94 3bws_A Protein LP49; two-domai 89.7 4.5 0.00015 39.0 13.6 192 212-440 178-396 (433)
95 1qks_A Cytochrome CD1 nitrite 89.5 20 0.00068 36.6 18.7 194 214-439 166-378 (567)
96 1ijq_A LDL receptor, low-densi 89.4 13 0.00046 34.4 17.1 149 210-382 84-238 (316)
97 1q7f_A NHL, brain tumor CG1071 89.4 11 0.00038 33.8 15.4 147 212-380 129-280 (286)
98 3scy_A Hypothetical bacterial 89.3 14 0.00048 34.5 21.0 118 313-441 221-346 (361)
99 1ri6_A Putative isomerase YBHE 89.0 6.7 0.00023 36.0 13.8 163 216-392 142-320 (343)
100 4gqb_B Methylosome protein 50; 89.0 15 0.00052 34.5 17.3 197 213-442 92-297 (344)
101 4ery_A WD repeat-containing pr 88.9 9.9 0.00034 34.7 14.8 141 215-379 35-179 (312)
102 4a2l_A BT_4663, two-component 88.8 27 0.00091 37.1 24.0 204 211-441 270-487 (795)
103 4ery_A WD repeat-containing pr 88.7 9.9 0.00034 34.7 14.7 192 214-438 76-272 (312)
104 3jro_A Fusion protein of prote 88.6 1.9 6.4E-05 45.9 10.6 205 215-442 67-294 (753)
105 1p22_A F-BOX/WD-repeat protein 88.6 9.3 0.00032 37.0 15.1 142 214-379 182-324 (435)
106 3fm0_A Protein CIAO1; WDR39,SG 88.5 11 0.00039 35.2 15.2 158 214-391 27-190 (345)
107 4aez_A CDC20, WD repeat-contai 88.3 18 0.00061 34.5 17.8 193 214-440 145-342 (401)
108 3fvz_A Peptidyl-glycine alpha- 88.3 13 0.00044 34.5 15.4 163 210-380 150-322 (329)
109 1k8k_C P40, ARP2/3 complex 41 88.0 17 0.00057 33.7 19.0 73 313-392 213-286 (372)
110 4g56_B MGC81050 protein; prote 87.9 14 0.00047 34.9 15.4 197 213-440 104-307 (357)
111 3v9f_A Two-component system se 87.8 30 0.001 36.5 23.8 200 213-441 322-531 (781)
112 2aq5_A Coronin-1A; WD40 repeat 87.7 19 0.00066 34.1 16.9 106 267-379 96-206 (402)
113 1nir_A Nitrite reductase; hemo 87.4 9.9 0.00034 38.6 14.7 203 215-437 238-461 (543)
114 4gqb_B Methylosome protein 50; 87.2 20 0.00067 33.7 17.5 110 212-335 136-248 (344)
115 2dg1_A DRP35, lactonase; beta 87.1 11 0.00037 34.8 14.0 148 267-434 57-213 (333)
116 4e54_B DNA damage-binding prot 86.9 5.9 0.0002 38.5 12.5 112 214-335 131-242 (435)
117 3vl1_A 26S proteasome regulato 86.9 21 0.00073 33.8 17.6 154 214-381 192-366 (420)
118 1gxr_A ESG1, transducin-like e 86.8 18 0.00062 32.8 16.9 192 213-439 107-301 (337)
119 3azo_A Aminopeptidase; POP fam 86.5 29 0.00099 35.6 18.1 210 214-442 90-333 (662)
120 3g4e_A Regucalcin; six bladed 86.4 10 0.00034 34.7 13.2 106 313-434 24-139 (297)
121 2hes_X YDR267CP; beta-propelle 86.3 19 0.00065 33.3 15.2 115 313-440 164-286 (330)
122 3vgz_A Uncharacterized protein 86.0 21 0.00071 32.8 23.4 204 214-440 52-268 (353)
123 3mkq_A Coatomer beta'-subunit; 86.0 12 0.0004 39.6 15.1 137 224-385 34-177 (814)
124 4a0p_A LRP6, LRP-6, low-densit 86.0 34 0.0012 35.3 21.9 186 210-435 44-238 (628)
125 1n7d_A LDL receptor, low-densi 86.0 1.8 6.1E-05 45.8 8.4 196 210-440 413-620 (699)
126 3zwl_B Eukaryotic translation 85.9 10 0.00035 35.0 13.2 65 214-287 43-108 (369)
127 1nir_A Nitrite reductase; hemo 85.9 27 0.00093 35.2 17.1 191 214-439 148-360 (543)
128 1yfq_A Cell cycle arrest prote 85.8 21 0.00071 32.6 17.7 146 214-381 67-226 (342)
129 2p4o_A Hypothetical protein; p 85.3 22 0.00076 32.5 18.6 104 213-335 41-149 (306)
130 3s94_A LRP-6, low-density lipo 85.3 37 0.0013 35.0 18.7 187 210-436 47-245 (619)
131 1n7d_A LDL receptor, low-densi 85.2 10 0.00036 39.8 13.9 148 210-381 460-613 (699)
132 2dg1_A DRP35, lactonase; beta 85.1 23 0.00078 32.5 17.3 200 212-441 53-270 (333)
133 1npe_A Nidogen, entactin; glyc 84.9 21 0.00071 31.8 20.2 155 210-392 86-246 (267)
134 3bg1_A Protein SEC13 homolog; 84.8 14 0.00049 33.9 13.4 115 213-338 23-142 (316)
135 2bkl_A Prolyl endopeptidase; m 84.5 41 0.0014 34.9 21.4 191 226-442 203-405 (695)
136 2hes_X YDR267CP; beta-propelle 84.3 5.4 0.00018 37.2 10.2 153 214-380 164-328 (330)
137 3fvz_A Peptidyl-glycine alpha- 84.1 26 0.0009 32.3 21.6 121 213-338 100-232 (329)
138 2hqs_A Protein TOLB; TOLB, PAL 84.1 31 0.0011 33.2 16.4 183 225-442 159-352 (415)
139 3azo_A Aminopeptidase; POP fam 83.6 15 0.00052 37.7 14.3 114 313-441 252-376 (662)
140 2ojh_A Uncharacterized protein 83.3 14 0.00048 32.6 12.4 184 225-441 62-265 (297)
141 2ynn_A Coatomer subunit beta'; 82.8 20 0.00067 32.7 13.4 142 214-380 24-172 (304)
142 2ghs_A AGR_C_1268P; regucalcin 82.7 28 0.00094 32.2 14.5 66 313-390 60-126 (326)
143 4a11_B DNA excision repair pro 82.2 14 0.00047 34.8 12.4 98 267-381 114-219 (408)
144 1got_B GT-beta; complex (GTP-b 82.0 32 0.0011 31.8 17.0 143 214-379 66-214 (340)
145 3ow8_A WD repeat-containing pr 81.6 32 0.0011 31.6 15.8 188 214-438 91-283 (321)
146 3ow8_A WD repeat-containing pr 81.3 33 0.0011 31.5 15.5 191 215-438 48-241 (321)
147 2ad6_A Methanol dehydrogenase 81.3 16 0.00053 37.4 13.0 119 307-439 56-190 (571)
148 3bg1_A Protein SEC13 homolog; 81.1 33 0.0011 31.4 14.7 70 215-288 71-141 (316)
149 1kb0_A Quinohemoprotein alcoho 80.9 57 0.0019 34.0 19.6 116 213-339 76-207 (677)
150 3mkq_A Coatomer beta'-subunit; 80.1 61 0.0021 33.9 18.7 192 212-439 64-264 (814)
151 2ghs_A AGR_C_1268P; regucalcin 80.0 37 0.0013 31.3 15.6 108 213-339 59-174 (326)
152 3scy_A Hypothetical bacterial 79.6 39 0.0013 31.3 17.2 119 313-442 165-301 (361)
153 3mmy_A MRNA export factor; mRN 79.4 37 0.0013 31.0 17.3 106 214-336 97-202 (368)
154 4a2l_A BT_4663, two-component 79.4 67 0.0023 33.9 25.2 199 212-440 414-620 (795)
155 2fp8_A Strictosidine synthase; 79.4 13 0.00044 34.4 10.9 117 313-440 29-180 (322)
156 2fp8_A Strictosidine synthase; 78.7 40 0.0014 30.9 19.1 196 214-436 91-315 (322)
157 3v64_C Agrin; beta propeller, 78.7 44 0.0015 31.4 21.2 147 210-381 123-274 (349)
158 1got_B GT-beta; complex (GTP-b 78.5 41 0.0014 31.0 17.0 145 267-437 156-304 (340)
159 2hqs_A Protein TOLB; TOLB, PAL 78.2 50 0.0017 31.7 20.7 183 225-442 203-395 (415)
160 3s94_A LRP-6, low-density lipo 77.8 67 0.0023 33.0 22.4 191 210-439 356-556 (619)
161 3k26_A Polycomb protein EED; W 77.4 43 0.0015 30.6 18.4 67 214-286 127-194 (366)
162 3mmy_A MRNA export factor; mRN 77.0 44 0.0015 30.5 14.1 146 215-387 54-206 (368)
163 4a0p_A LRP6, LRP-6, low-densit 75.6 64 0.0022 33.2 15.7 133 210-363 87-224 (628)
164 3iz6_a 40S ribosomal protein R 75.4 54 0.0019 30.8 18.8 107 318-439 174-285 (380)
165 3sfz_A APAF-1, apoptotic pepti 74.2 57 0.002 36.3 16.1 144 212-380 624-774 (1249)
166 2p4o_A Hypothetical protein; p 73.7 26 0.0009 32.0 11.2 106 313-435 42-148 (306)
167 1kb0_A Quinohemoprotein alcoho 73.6 27 0.00093 36.4 12.4 118 307-438 71-203 (677)
168 3o4h_A Acylamino-acid-releasin 73.4 48 0.0016 33.3 14.1 183 215-440 123-320 (582)
169 3sov_A LRP-6, low-density lipo 73.4 58 0.002 30.1 16.0 148 210-382 86-238 (318)
170 1r5m_A SIR4-interacting protei 73.4 60 0.002 30.3 15.4 197 213-439 118-324 (425)
171 1flg_A Protein (quinoprotein e 73.2 32 0.0011 35.1 12.6 120 307-439 62-198 (582)
172 3e5z_A Putative gluconolactona 72.1 54 0.0019 29.3 17.1 193 214-441 39-253 (296)
173 1yiq_A Quinohemoprotein alcoho 72.0 24 0.00082 36.9 11.5 117 307-437 64-195 (689)
174 3k26_A Polycomb protein EED; W 71.9 59 0.002 29.6 14.6 140 226-380 45-192 (366)
175 2pbi_B Guanine nucleotide-bind 71.8 64 0.0022 30.0 16.9 145 214-379 165-314 (354)
176 1kv9_A Type II quinohemoprotei 71.3 29 0.00099 36.1 11.9 117 307-438 60-191 (668)
177 2xyi_A Probable histone-bindin 70.3 24 0.00083 34.0 10.5 22 313-334 243-264 (430)
178 3i2n_A WD repeat-containing pr 70.1 64 0.0022 29.3 18.9 150 214-381 128-292 (357)
179 3no2_A Uncharacterized protein 68.7 50 0.0017 29.7 11.7 98 266-381 5-107 (276)
180 1pby_B Quinohemoprotein amine 68.3 67 0.0023 28.8 13.9 25 313-337 44-69 (337)
181 1jmx_B Amine dehydrogenase; ox 66.6 75 0.0026 28.7 19.6 27 212-238 51-78 (349)
182 3dm0_A Maltose-binding peripla 66.2 95 0.0032 31.9 14.7 191 212-439 439-637 (694)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 65.7 74 0.0025 28.4 17.1 107 313-435 186-300 (314)
184 3ei3_B DNA damage-binding prot 65.5 85 0.0029 29.1 13.2 144 214-381 130-283 (383)
185 1vyh_C Platelet-activating fac 65.5 94 0.0032 29.5 17.9 141 214-379 119-264 (410)
186 3sfz_A APAF-1, apoptotic pepti 65.1 25 0.00086 39.2 10.6 138 219-380 977-1116(1249)
187 3fm0_A Protein CIAO1; WDR39,SG 65.1 32 0.0011 31.9 9.9 149 213-379 71-224 (345)
188 3f3f_A Nucleoporin SEH1; struc 63.8 81 0.0028 28.1 18.7 68 215-286 71-145 (351)
189 3i2n_A WD repeat-containing pr 63.5 86 0.003 28.3 17.8 151 215-381 80-244 (357)
190 1yiq_A Quinohemoprotein alcoho 63.3 1.4E+02 0.005 30.9 19.2 116 213-339 69-200 (689)
191 3v7d_B Cell division control p 63.3 1.1E+02 0.0036 29.3 21.3 140 217-380 282-421 (464)
192 4e54_B DNA damage-binding prot 63.1 1.1E+02 0.0037 29.3 16.7 109 213-335 219-329 (435)
193 3pe7_A Oligogalacturonate lyas 63.0 83 0.0028 29.1 12.6 55 225-287 60-114 (388)
194 1sq9_A Antiviral protein SKI8; 62.8 97 0.0033 28.7 21.9 159 216-379 82-266 (397)
195 1w6s_A Methanol dehydrogenase 62.7 62 0.0021 33.2 12.1 118 307-438 56-195 (599)
196 2ad6_A Methanol dehydrogenase 62.4 1.4E+02 0.0046 30.3 19.0 116 213-339 61-193 (571)
197 3tc9_A Hypothetical hydrolase; 62.4 88 0.003 30.3 12.8 143 213-380 148-301 (430)
198 3hrp_A Uncharacterized protein 61.6 60 0.0021 31.2 11.4 111 313-440 141-255 (409)
199 2xdw_A Prolyl endopeptidase; a 61.4 1.5E+02 0.0052 30.5 19.8 114 313-441 297-423 (710)
200 3odt_A Protein DOA1; ubiquitin 60.9 88 0.003 27.6 15.2 108 312-441 194-303 (313)
201 3gre_A Serine/threonine-protei 60.8 1.1E+02 0.0039 28.8 13.9 65 267-338 184-250 (437)
202 3gre_A Serine/threonine-protei 60.2 1.2E+02 0.004 28.7 13.5 110 214-338 181-297 (437)
203 1jmx_B Amine dehydrogenase; ox 59.1 38 0.0013 30.8 9.1 27 312-338 9-35 (349)
204 1qks_A Cytochrome CD1 nitrite 58.4 1.6E+02 0.0055 29.8 16.1 31 410-440 512-544 (567)
205 1sq9_A Antiviral protein SKI8; 58.2 1.2E+02 0.004 28.1 16.3 64 267-333 83-157 (397)
206 1pgu_A Actin interacting prote 57.8 1.5E+02 0.0052 29.3 16.3 142 214-380 456-614 (615)
207 2ynn_A Coatomer subunit beta'; 57.7 1.1E+02 0.0036 27.5 17.5 194 212-440 64-265 (304)
208 4gga_A P55CDC, cell division c 57.3 1.3E+02 0.0045 28.4 14.4 96 268-377 118-215 (420)
209 2kwv_A RAD30 homolog B, DNA po 57.0 4.6 0.00016 25.6 1.4 25 112-136 14-38 (48)
210 2oit_A Nucleoporin 214KDA; NH2 56.7 1.4E+02 0.0049 28.7 14.4 161 267-437 164-338 (434)
211 2vdu_B TRNA (guanine-N(7)-)-me 55.3 1.5E+02 0.005 28.4 22.2 61 314-380 210-271 (450)
212 2pm9_A Protein WEB1, protein t 54.3 1.4E+02 0.0047 27.8 18.2 150 215-381 178-338 (416)
213 3hxj_A Pyrrolo-quinoline quino 53.5 1.1E+02 0.0036 27.6 11.2 82 267-363 109-194 (330)
214 3dm0_A Maltose-binding peripla 53.1 2E+02 0.0069 29.4 17.1 61 267-336 533-595 (694)
215 2z3z_A Dipeptidyl aminopeptida 53.0 2E+02 0.0069 29.3 19.4 112 324-442 235-352 (706)
216 3iz6_a 40S ribosomal protein R 53.0 1.5E+02 0.005 27.7 14.0 154 212-380 215-375 (380)
217 1pgu_A Actin interacting prote 52.9 1.8E+02 0.0061 28.7 17.1 93 274-380 466-572 (615)
218 3sjl_D Methylamine dehydrogena 52.2 1.5E+02 0.0052 28.3 12.2 114 313-439 237-368 (386)
219 3tc9_A Hypothetical hydrolase; 51.3 99 0.0034 29.9 11.0 110 313-439 149-262 (430)
220 3lrv_A PRE-mRNA-splicing facto 50.7 1.5E+02 0.005 27.0 18.9 113 212-338 179-299 (343)
221 1w6s_A Methanol dehydrogenase 50.0 2.2E+02 0.0076 28.9 21.1 120 213-339 61-199 (599)
222 3sre_A PON1, serum paraoxonase 49.8 1.7E+02 0.0059 27.6 15.7 69 358-433 128-211 (355)
223 3dr2_A Exported gluconolactona 49.8 59 0.002 29.4 8.7 113 314-441 57-185 (305)
224 2pbi_B Guanine nucleotide-bind 49.5 1.6E+02 0.0055 27.1 18.1 145 266-436 167-317 (354)
225 3dr2_A Exported gluconolactona 48.2 1.5E+02 0.0052 26.5 14.4 196 214-441 56-274 (305)
226 4hw6_A Hypothetical protein, I 47.4 86 0.0029 30.5 9.8 141 212-379 150-301 (433)
227 1pby_B Quinohemoprotein amine 47.0 1.6E+02 0.0053 26.2 21.8 27 212-238 42-69 (337)
228 2hz6_A Endoplasmic reticulum t 47.0 12 0.00039 35.8 3.3 29 309-338 5-35 (369)
229 2p9w_A MAL S 1 allergenic prot 46.2 1.9E+02 0.0065 27.0 17.3 158 211-381 21-214 (334)
230 2hz6_A Endoplasmic reticulum t 46.2 12 0.00041 35.7 3.3 61 266-337 10-74 (369)
231 1erj_A Transcriptional repress 44.4 2E+02 0.0069 26.8 16.1 156 214-380 218-389 (393)
232 1yr2_A Prolyl oligopeptidase; 44.1 2.9E+02 0.0099 28.6 19.7 142 276-442 295-449 (741)
233 3ott_A Two-component system se 42.8 3.1E+02 0.01 28.5 15.0 137 210-363 478-615 (758)
234 2l3i_A Aoxki4A, antimicrobial 42.5 6.7 0.00023 21.4 0.4 8 3-10 21-28 (30)
235 1vyh_C Platelet-activating fac 42.0 2.3E+02 0.0077 26.7 20.9 109 213-338 160-270 (410)
236 2pm9_A Protein WEB1, protein t 42.0 2.1E+02 0.0072 26.4 19.5 112 212-338 76-202 (416)
237 3ott_A Two-component system se 41.8 3.2E+02 0.011 28.3 24.8 191 210-440 69-266 (758)
238 2be1_A Serine/threonine-protei 41.1 93 0.0032 29.3 8.5 28 411-441 110-137 (339)
239 4aow_A Guanine nucleotide-bind 41.1 1.9E+02 0.0066 25.6 12.4 142 216-381 186-338 (340)
240 3frx_A Guanine nucleotide-bind 40.4 2.1E+02 0.007 25.8 17.1 146 213-380 117-267 (319)
241 3amr_A 3-phytase; beta-propell 39.5 2.5E+02 0.0085 26.5 18.7 135 275-433 99-262 (355)
242 3f3f_A Nucleoporin SEH1; struc 38.5 2.1E+02 0.007 25.2 18.3 22 314-335 124-145 (351)
243 2z3z_A Dipeptidyl aminopeptida 37.8 3.4E+02 0.012 27.5 17.1 188 225-437 235-438 (706)
244 3c75_H MADH, methylamine dehyd 37.4 2.9E+02 0.01 26.7 12.4 118 314-438 85-213 (426)
245 1kv9_A Type II quinohemoprotei 37.2 3.6E+02 0.012 27.7 16.8 119 267-388 68-195 (668)
246 4a11_B DNA excision repair pro 37.1 2.4E+02 0.0083 25.7 17.9 106 267-381 259-366 (408)
247 2xyi_A Probable histone-bindin 37.1 2.3E+02 0.008 26.7 11.2 104 214-333 243-353 (430)
248 3odt_A Protein DOA1; ubiquitin 37.0 2.1E+02 0.0072 24.9 19.8 97 219-330 33-130 (313)
249 1ddw_A GLGF-domain protein hom 36.5 85 0.0029 24.5 6.2 39 226-272 12-51 (120)
250 2ecf_A Dipeptidyl peptidase IV 36.4 3.6E+02 0.012 27.5 16.9 56 225-290 129-187 (741)
251 1yfq_A Cell cycle arrest prote 35.2 2.4E+02 0.0082 25.0 15.6 104 214-333 22-131 (342)
252 2xbg_A YCF48-like protein; pho 34.0 2.7E+02 0.0093 25.3 13.2 171 191-389 109-286 (327)
253 1r5m_A SIR4-interacting protei 33.4 2.8E+02 0.0097 25.4 16.4 26 313-338 160-185 (425)
254 3c5m_A Oligogalacturonate lyas 33.3 2.8E+02 0.0096 25.3 13.0 204 212-444 44-283 (396)
255 2qe8_A Uncharacterized protein 32.6 2.3E+02 0.008 25.8 10.0 55 309-363 71-138 (343)
256 3b7f_A Glycosyl hydrolase, BNR 32.5 2.3E+02 0.0078 26.6 10.1 155 268-440 24-214 (394)
257 4h5i_A Guanine nucleotide-exch 32.3 3E+02 0.01 25.3 15.0 73 313-391 280-358 (365)
258 1nr0_A Actin interacting prote 32.2 4E+02 0.014 26.6 14.3 147 212-377 199-352 (611)
259 2ecf_A Dipeptidyl peptidase IV 32.0 4.2E+02 0.015 26.9 20.0 31 410-440 295-327 (741)
260 4ggc_A P55CDC, cell division c 28.4 3E+02 0.01 24.0 15.5 64 268-338 38-103 (318)
261 3ju4_A Endo-N-acetylneuraminid 25.8 2.3E+02 0.0078 27.5 8.1 55 311-365 346-406 (670)
262 1i2h_A PSD-ZIP45(homer-1C/VESL 25.5 1.3E+02 0.0045 25.0 5.8 39 226-272 17-56 (168)
263 4h5i_A Guanine nucleotide-exch 25.1 4E+02 0.014 24.4 17.5 193 212-434 142-343 (365)
264 4dzn_A Coiled-coil peptide CC- 25.0 54 0.0018 18.2 2.2 15 2-16 2-16 (33)
265 2xe4_A Oligopeptidase B; hydro 24.3 4.7E+02 0.016 27.1 11.6 115 313-441 330-465 (751)
266 3hxj_A Pyrrolo-quinoline quino 23.9 3.3E+02 0.011 24.0 9.3 48 310-362 104-153 (330)
267 1flg_A Protein (quinoprotein e 23.9 2.9E+02 0.01 27.8 9.5 78 277-366 468-549 (582)
268 3amr_A 3-phytase; beta-propell 23.8 3.4E+02 0.012 25.5 9.1 107 217-332 89-209 (355)
269 3kya_A Putative phosphatase; s 23.4 5.1E+02 0.017 25.6 10.8 107 314-433 152-277 (496)
270 3frx_A Guanine nucleotide-bind 21.6 4.3E+02 0.015 23.5 19.8 150 212-380 74-227 (319)
271 1evh_A WH1 domain, protein (ME 21.2 2E+02 0.0067 22.1 5.8 41 226-272 12-52 (112)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.85 E-value=2e-19 Score=173.60 Aligned_cols=252 Identities=16% Similarity=0.181 Sum_probs=180.5
Q ss_pred CEEEEEeeCC-CCCcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC----CceEEEEcCCCCceEecCCCC
Q 012227 170 PWFYTITHEN-VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG----HRNFYVCNPLTQSFKELPARS 244 (468)
Q Consensus 170 p~l~~~~~~~-~~~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~----~~~~~V~NP~T~~~~~LP~~~ 244 (468)
..++++.... ......||+..++|..++ .+|..+....++..+|.|++.++. ...++++||.|++|..+++++
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIR--CPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECC--CCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCC--CCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 4566665432 344678999999998654 233222111244557777666542 257999999999999999877
Q ss_pred cCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEE
Q 012227 245 VKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILY 317 (468)
Q Consensus 245 ~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY 317 (468)
..+....++ ..+ .+|+++|+.. .+++||+.+++|+.++.+|.. +..+.++.++|++|
T Consensus 90 ~~r~~~~~~--~~~-------~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iy 153 (306)
T 3ii7_A 90 TPRDSLAAC--AAE-------GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-------RCSHGMVEANGLIY 153 (306)
T ss_dssp SCCBSCEEE--EET-------TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEE
T ss_pred ccccceeEE--EEC-------CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-------cceeEEEEECCEEE
Confidence 655443322 233 4788888742 399999999999999877654 23456778999999
Q ss_pred EEEcC---------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227 318 FMRSD---------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV 388 (468)
Q Consensus 318 ~~~~~---------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v 388 (468)
++++. ...+..||+.+++|+.+ .++|..+....++.++|+||++++.... ...-++|.+|..+++|+++
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEEC
T ss_pred EECCCCCCCCcccccceEEEeCCCCCeEEEC-CCccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEEC
Confidence 99861 35689999999999998 4677777778888999999999986542 2234688899999999999
Q ss_pred EeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCCCC
Q 012227 389 DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPRGR 449 (468)
Q Consensus 389 ~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~~~ 449 (468)
..+|..... ..++..++.||+..+.. ....+++||+++++|+.++.++.++..
T Consensus 232 ~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 287 (306)
T 3ii7_A 232 SPMPWKGVT--------VKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVT 287 (306)
T ss_dssp CCCSCCBSC--------CEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCT
T ss_pred CCCCCCccc--------eeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccce
Confidence 888754332 23344478888754322 346799999999999999988876643
No 2
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.84 E-value=7.6e-19 Score=170.52 Aligned_cols=254 Identities=16% Similarity=0.219 Sum_probs=176.4
Q ss_pred cceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC-----------CceEEEEcCCCCceEecCCCCcCCccee
Q 012227 183 GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG-----------HRNFYVCNPLTQSFKELPARSVKVWSRV 251 (468)
Q Consensus 183 ~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~ 251 (468)
...|||.+++|...+++......... ++..+|.|++.++. ...++++||.|++|..+++++..+....
T Consensus 26 ~~~yd~~~~~W~~~~~~~~~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQIPRNHSS-IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEETTTTEEEEEEECTTSCSSEEE-EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred eEEECCCCCceecccCCccCCccceE-EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 46899999999874444321222222 55667777666541 1138899999999999998776554333
Q ss_pred EEEEEEcCCCCCCCeEEEEEEecC--------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-
Q 012227 252 AVGMTLNGNSTSSGYKILWVGCDG--------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD- 322 (468)
Q Consensus 252 ~~~~~~d~~~~~~~ykVv~v~~~~--------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~- 322 (468)
+ + ..+ -+|+++|+.. .+++||+.+++|+.++.+|.. +..+.+++++|+||++++.
T Consensus 105 ~-~-~~~-------~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~ 168 (318)
T 2woz_A 105 L-G-EVD-------DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-------VYGHNVISHNGMIYCLGGKT 168 (318)
T ss_dssp E-E-EET-------TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-------EESCEEEEETTEEEEECCEE
T ss_pred e-E-EEC-------CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-------ccccEEEEECCEEEEEcCCC
Confidence 2 2 223 4788888742 389999999999998877654 2345677799999999862
Q ss_pred -----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhh
Q 012227 323 -----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL 397 (468)
Q Consensus 323 -----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~ 397 (468)
...+..||+.+++|+.+ .++|..+....++.++|+||++++... ....-.+|.+|..+++|+++..+|.....
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 246 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDL-APMKTPRSMFGVAIHKGKIVIAGGVTE-DGLSASVEAFDLKTNKWEVMTEFPQERSS 246 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEEEEEET-TEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred CCCCccceEEEEcCCCCEEEEC-CCCCCCcccceEEEECCEEEEEcCcCC-CCccceEEEEECCCCeEEECCCCCCcccc
Confidence 24699999999999998 466666677788889999999998764 22345789999999999999888765432
Q ss_pred cccCcceEEEEEecCCEEEEEeeeC------------CCCeEEEEECCCCcEEEccCCccCCCCccceeeeeeeeeeecC
Q 012227 398 DFYGKHVRMTCLGNKGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLM 465 (468)
Q Consensus 398 ~~~~~~~~~~~~~~~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~~~~~~~~~~~~~~~g~~f~P~~~ 465 (468)
..++..++.||+..+.. ....+++||+++++|+++ ++.++......+..+-.|.-+++
T Consensus 247 --------~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~~~ 316 (318)
T 2woz_A 247 --------ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLFKLS 316 (318)
T ss_dssp --------CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGGGCB
T ss_pred --------eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEEEEee
Confidence 22334467888743321 135799999999999999 34443332234444555544443
No 3
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.84 E-value=7.5e-19 Score=170.35 Aligned_cols=234 Identities=15% Similarity=0.186 Sum_probs=167.5
Q ss_pred CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC------C-----ceEEEEcCCCCceEecCCCCcCCcce
Q 012227 182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG------H-----RNFYVCNPLTQSFKELPARSVKVWSR 250 (468)
Q Consensus 182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~------~-----~~~~V~NP~T~~~~~LP~~~~~~~~~ 250 (468)
....|||.+++|...++|. |..+....++..+|.|++.++. . ..++++||.|++|..+++++..+...
T Consensus 14 ~~~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 14 GAVAYDPAANECYCASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp EEEEEETTTTEEEEEECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred ceEEECCCCCeEecCCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 3568999999998644443 2122222255567766655431 1 23899999999999999877554433
Q ss_pred eEEEEEEcCCCCCCCeEEEEEEec---------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEc
Q 012227 251 VAVGMTLNGNSTSSGYKILWVGCD---------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRS 321 (468)
Q Consensus 251 ~~~~~~~d~~~~~~~ykVv~v~~~---------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~ 321 (468)
.++ ..+ -+|+++|+. ..+++||+.+++|+.++.+|.. +..+.++.++|+||++++
T Consensus 93 ~~~--~~~-------~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 93 GLG--EAL-------NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-------VYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp EEE--EET-------TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECC
T ss_pred eEE--EEC-------CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-------ccceeEEEECCEEEEEeC
Confidence 222 223 488888872 1399999999999999887654 235667789999999986
Q ss_pred C------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhh
Q 012227 322 D------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIW 395 (468)
Q Consensus 322 ~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~ 395 (468)
. ...+..||+.+++|+.+ .++|..+....++.++|+||++++.... ...-.+|++|..+++|+++..+|..+
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEEEEECSS-SEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCcccceEEEEeCCCCeEEEC-CCCCCchhceEEEEECCEEEEEeccCCC-CccceEEEEECCCCeEEECCCCCCcc
Confidence 3 24699999999999997 4677777778888999999999987542 23458899999999999998887554
Q ss_pred hhcccCcceEEEEEecCCEEEEEeeeC------------CCCeEEEEECCCCcEEEccC
Q 012227 396 CLDFYGKHVRMTCLGNKGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~ 442 (468)
.. ..++..++.||+..+.. ....+++||+++++|+.+..
T Consensus 235 ~~--------~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 285 (315)
T 4asc_A 235 SS--------LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLR 285 (315)
T ss_dssp BS--------CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEES
T ss_pred cc--------eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhcc
Confidence 32 22334467887743321 12468999999999999943
No 4
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.82 E-value=1e-18 Score=168.84 Aligned_cols=250 Identities=16% Similarity=0.170 Sum_probs=176.5
Q ss_pred EEEEEeeC---CCCCcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC---------CceEEEEcCCCCceE
Q 012227 171 WFYTITHE---NVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG---------HRNFYVCNPLTQSFK 238 (468)
Q Consensus 171 ~l~~~~~~---~~~~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~---------~~~~~V~NP~T~~~~ 238 (468)
.++++... .......||+..++|..++ .+|..+....++..+|.|++.++. ...++++||.|++|.
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECC--CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 35555432 1233568999999998663 333222111144557766665432 136899999999999
Q ss_pred ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE
Q 012227 239 ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV 312 (468)
Q Consensus 239 ~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~ 312 (468)
.+++++..+....++ ..+ .+|+++|+. ..+++||+.+++|+.++.+|.. +....++.+
T Consensus 104 ~~~~~p~~r~~~~~~--~~~-------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~ 167 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVG--VID-------GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-------RIGVGVAVL 167 (308)
T ss_dssp ECCCCSSCCBTCEEE--EET-------TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEE
T ss_pred ECCCCCcCccccEEE--EEC-------CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-------ccceEEEEE
Confidence 999877655443322 233 378888763 3499999999999999877654 234567778
Q ss_pred CCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227 313 DGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 313 ~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~ 387 (468)
+++||++++. ...+..||+.+++|..+ .++|..+....++.++|+||++++.... ...-++|.+|..+++|++
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccceEEEECCEEEEEeCCCCC-CccceEEEEeCCCCcEEE
Confidence 9999999862 24699999999999987 4566666777888899999999976532 224478899999999999
Q ss_pred EEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCCC
Q 012227 388 VDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPRG 448 (468)
Q Consensus 388 v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~~ 448 (468)
+..||..... ..++..++.||+..+.. ....+++||+++++|++++.+|.++.
T Consensus 246 ~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 301 (308)
T 1zgk_A 246 VAPMKHRRSA--------LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRS 301 (308)
T ss_dssp CCCCSSCCBS--------CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB
T ss_pred CCCCCCCccc--------eEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcc
Confidence 9888754321 22333478888753321 24579999999999999998887764
No 5
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.82 E-value=1.7e-18 Score=166.70 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=169.8
Q ss_pred CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCCCcCCcceeEEEEE
Q 012227 182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMT 256 (468)
Q Consensus 182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~ 256 (468)
....||+..++|..++ .+|.......++..+|.|++.++. ...++++||.|++|..+++++..+....++ .
T Consensus 31 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~ 106 (302)
T 2xn4_A 31 SVECYDFKEERWHQVA--ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--V 106 (302)
T ss_dssp CEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--E
T ss_pred cEEEEcCcCCcEeEcc--cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--E
Confidence 3568999999998653 333222111134457766666432 246999999999999999877655443322 2
Q ss_pred EcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-------C
Q 012227 257 LNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-------P 323 (468)
Q Consensus 257 ~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-------~ 323 (468)
++ -+|+++|+.. .+++||+.+++|+.++.+|.. +....++.++|+||++++. .
T Consensus 107 ~~-------~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 107 LN-------GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-------RSSVGVGVVGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp ET-------TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred EC-------CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-------ccCceEEEECCEEEEEeCCCCCCCccc
Confidence 33 3788888743 389999999999999877654 2345677789999999852 2
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcc
Q 012227 324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKH 403 (468)
Q Consensus 324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~ 403 (468)
..+..||+.+++|+.+ .++|..+....++.++|+||++++.... ...-++|.+|..+++|+++..+|.....
T Consensus 173 ~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~r~~------ 244 (302)
T 2xn4_A 173 STVECYNATTNEWTYI-AEMSTRRSGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTTNAWRQVADMNMCRRN------ 244 (302)
T ss_dssp CCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBSSS-SBCCCEEEEETTTTEEEEECCCSSCCBS------
T ss_pred cEEEEEeCCCCcEEEC-CCCccccccccEEEECCEEEEECCCCCC-cccceEEEEeCCCCCEeeCCCCCCcccc------
Confidence 4689999999999998 4666667777888999999999986431 2234688899999999999888754321
Q ss_pred eEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEcc-CCccCC
Q 012227 404 VRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVP-GCVVPR 447 (468)
Q Consensus 404 ~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~-~~~~~~ 447 (468)
..++..++.||+..+.. ....+++||+++++|+.++ .++.++
T Consensus 245 --~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r 290 (302)
T 2xn4_A 245 --AGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGR 290 (302)
T ss_dssp --CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCC
T ss_pred --CeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCccc
Confidence 22334478888754322 2356999999999999997 667665
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.80 E-value=2.6e-18 Score=165.21 Aligned_cols=238 Identities=18% Similarity=0.230 Sum_probs=170.3
Q ss_pred CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC-----CceEEEEcCCCCc---eEecCCCCcCCcceeEE
Q 012227 182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQS---FKELPARSVKVWSRVAV 253 (468)
Q Consensus 182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~ 253 (468)
....||+.+++|..++ .+|........+..+|.|++.++. ...++++||.|++ |..+++++..+....++
T Consensus 32 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLP--SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred EEEEEcCCCCeEEeCC--CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3568999999998654 233222111144456766665432 2469999999999 99999877655443322
Q ss_pred EEEEcCCCCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-----
Q 012227 254 GMTLNGNSTSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD----- 322 (468)
Q Consensus 254 ~~~~d~~~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~----- 322 (468)
..+ .+|+++|+. ..+++||+.+++|+.++.+|.. +..+.++.++|+||++++.
T Consensus 110 --~~~-------~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~ 173 (301)
T 2vpj_A 110 --TLG-------DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-------REGAGLVVASGVIYCLGGYDGLNI 173 (301)
T ss_dssp --EET-------TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-------CBSCEEEEETTEEEEECCBCSSCB
T ss_pred --EEC-------CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-------cccceEEEECCEEEEECCCCCCcc
Confidence 223 478888873 2499999999999998776643 2345677789999999862
Q ss_pred CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCc
Q 012227 323 PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK 402 (468)
Q Consensus 323 ~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~ 402 (468)
...+..||+.+++|+.+ .++|..+....++..+|+||++++.... ...-++|.+|..+++|+++..+|.....
T Consensus 174 ~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~r~~----- 246 (301)
T 2vpj_A 174 LNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDSWTTVTSMTTPRCY----- 246 (301)
T ss_dssp CCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTEEEEECCCSSCCBS-----
T ss_pred cceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCcEEECCCCCCcccc-----
Confidence 24699999999999998 4666667777888999999999986432 1234788889989999999888755432
Q ss_pred ceEEEEEecCCEEEEEeeeCC---CCeEEEEECCCCcEEEccCCccCC
Q 012227 403 HVRMTCLGNKGLLMLSLRSRQ---MNRLVTYNVMSREWLKVPGCVVPR 447 (468)
Q Consensus 403 ~~~~~~~~~~~~I~~~~~~~~---~~~l~~YD~~t~~w~~v~~~~~~~ 447 (468)
..++..+|.||+..+... ...+++||+++++|+.++.+|.++
T Consensus 247 ---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r 291 (301)
T 2vpj_A 247 ---VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQR 291 (301)
T ss_dssp ---CEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred ---eeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCccc
Confidence 223344788887543221 257899999999999998877665
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.76 E-value=1e-16 Score=154.45 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=150.3
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----CcEEEEeCCCCCccCCCCCCCCcc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----GEYEIYDSLRNSWTRPGSMPSNIK 298 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~~v~vy~s~t~~W~~~~~~p~~~~ 298 (468)
...++++||.+++|..+++++..+....++ ..+ -+|+++|+. ..+++||+.+++|+.++.+|..
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-- 91 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWD-------NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP-- 91 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEE--EET-------TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEE--EEC-------CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--
Confidence 357999999999999999887665443322 233 378888874 3499999999999998877654
Q ss_pred cCcccccccceEEECCEEEEEEcCC------CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCc--
Q 012227 299 LPVSLNFRSQAVSVDGILYFMRSDP------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAA-- 370 (468)
Q Consensus 299 ~~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~-- 370 (468)
+..+.++.++|+||++++.. ..+..||+.+++|..+ .++|..+....++.++|+||++++......
T Consensus 92 -----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 92 -----RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp -----CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred -----ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEEECCEEEEECCCCCCCCcc
Confidence 23456778899999998632 4699999999999997 566666777788889999999998764321
Q ss_pred -cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccC
Q 012227 371 -TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVP 446 (468)
Q Consensus 371 -~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~ 446 (468)
..-.+|.+|..+++|+++..||..... ..++..++.||+..+.. ....+++||+++++|+.++.+|.+
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKN--------HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred cccceEEEeCCCCCeEEECCCccchhhc--------ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 144788889999999999888755432 22333478888753321 135799999999999999988877
Q ss_pred CC
Q 012227 447 RG 448 (468)
Q Consensus 447 ~~ 448 (468)
+.
T Consensus 238 r~ 239 (306)
T 3ii7_A 238 GV 239 (306)
T ss_dssp BS
T ss_pred cc
Confidence 64
No 8
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.74 E-value=1.5e-16 Score=156.65 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=147.2
Q ss_pred eeecCceEEEEEc-CCceEEEEcCC--CCceEecCCCC-cCCcceeEEEEEEcCCCCCCCeEEEEEEec-----------
Q 012227 210 VASAGGLVCFLDI-GHRNFYVCNPL--TQSFKELPARS-VKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------- 274 (468)
Q Consensus 210 ~~s~~GLl~~~~~-~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------- 274 (468)
.+..+|.|++.++ ....++++||. +++|..+++++ ..+....++ .++ -+|+++|+.
T Consensus 15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~ 85 (357)
T 2uvk_A 15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA--FID-------GNLYVFGGIGKNSEGLTQVF 85 (357)
T ss_dssp EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEE--EET-------TEEEEECCEEECTTSCEEEC
T ss_pred EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEE--EEC-------CEEEEEcCCCCCCCccceee
Confidence 3344777776654 33579999998 59999999876 454433322 233 378888875
Q ss_pred CcEEEEeCCCCCccCCCCCC-CCcccCcccccccceEEECCEEEEEEcCC------------------------------
Q 012227 275 GEYEIYDSLRNSWTRPGSMP-SNIKLPVSLNFRSQAVSVDGILYFMRSDP------------------------------ 323 (468)
Q Consensus 275 ~~v~vy~s~t~~W~~~~~~p-~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------------------------------ 323 (468)
..+++||+.+++|+.++.++ .. +..+.++.++|+||++++..
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMG-------MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSC-------CSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred ccEEEEeCCCCcEEECCCCCCcc-------cccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 23999999999999998776 22 23455677999999998632
Q ss_pred ---------CeEEEEECCCCeEEEeecCCCCCC-CCceEEEECCeEEEEEEEeeCCccEEEEEEEec--CCCCeEEEEee
Q 012227 324 ---------EGIVSYNMVTGVWKQFIIPTPLHL-NDHTLAECGGRIMLVGLLTKNAATCVCIWELQK--MTLLWKEVDRM 391 (468)
Q Consensus 324 ---------~~i~~fD~~~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~--~~~~W~~v~~m 391 (468)
..+..||+.+++|+.+ .++|... ....++..+|+||++++.........++|.++. .+++|+++..|
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~ 237 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYA-GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEE-EECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred ccccccCCcccEEEEeCCCCcEEEC-CCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence 5799999999999998 4555433 347788899999999987653333446777764 78999999888
Q ss_pred ChhhhhcccCcceEEEEEecCCEEEEEeeeCC--------------------CCeEEEEECCCCcEEEccCCccCCC
Q 012227 392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ--------------------MNRLVTYNVMSREWLKVPGCVVPRG 448 (468)
Q Consensus 392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~--------------------~~~l~~YD~~t~~w~~v~~~~~~~~ 448 (468)
+..... . ...++..++.||+..+... ...+.+||+++++|+.++.+|.++.
T Consensus 238 ~~~~~~--~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 308 (357)
T 2uvk_A 238 SSPDGV--A----GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA 308 (357)
T ss_dssp STTTCC--B----SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB
T ss_pred CCCccc--c----cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc
Confidence 643221 0 1223445788887543211 1357899999999999988887764
No 9
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.74 E-value=2.8e-16 Score=151.08 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=148.8
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIK 298 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~ 298 (468)
..++++||.+++|..+++++..+....++ ..+ .+|+++|+.. .+++||+.+++|+.++.+|..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-- 98 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMV--YMA-------GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR-- 98 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEE--EET-------TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEE--EEC-------CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--
Confidence 46899999999999998876655433322 223 4788888742 499999999999999877654
Q ss_pred cCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC-ccE
Q 012227 299 LPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA-ATC 372 (468)
Q Consensus 299 ~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~-~~~ 372 (468)
+..+.++.++|++|++++.. ..+..||+.+++|..+ .++|..+....++.++|+||++++..... ...
T Consensus 99 -----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 99 -----RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp -----CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred -----ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEECCEEEEEeCCCCCCCccc
Confidence 23466777899999998622 3588999999999998 56676677778888999999999875422 123
Q ss_pred EEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCCC
Q 012227 373 VCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPRG 448 (468)
Q Consensus 373 i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~~ 448 (468)
-++|.+|..+++|+++..||..... ..++..++.||+..+.. ....+++||+++++|+.++.++.++.
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 243 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSG--------AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred cEEEEEeCCCCcEEECCCCcccccc--------ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence 4688889999999999888755432 22334478888754322 13579999999999999998887654
No 10
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.74 E-value=2.5e-16 Score=152.08 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=148.2
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec----------CcEEEEeCCCCCccCCCCCC
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------GEYEIYDSLRNSWTRPGSMP 294 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------~~v~vy~s~t~~W~~~~~~p 294 (468)
..++++||.+++|..+++++..+....++ ..+ -+|+++|+. ..+++||+.+++|+.++.+|
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p 109 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGC--VVG-------GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE--EET-------TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEE--EEC-------CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC
Confidence 46999999999999998876655443222 223 478888775 24899999999999998776
Q ss_pred CCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC
Q 012227 295 SNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA 369 (468)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~ 369 (468)
.. +....++.++|+||++++. ...+..||+.+++|..+ .++|..+....++.++|+||++++.....
T Consensus 110 ~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 181 (308)
T 1zgk_A 110 VP-------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVLNRLLYAVGGFDGTN 181 (308)
T ss_dssp SC-------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred cC-------ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeEC-CCCCccccceEEEEECCEEEEEeCCCCCC
Confidence 54 2345677789999999862 24689999999999987 46666677778888999999999865322
Q ss_pred ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccC
Q 012227 370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVP 446 (468)
Q Consensus 370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~ 446 (468)
..-++|.+|..+++|+++..||..... ..++..++.||+..+.. ....+++||+++++|+.++.+|.+
T Consensus 182 -~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 182 -RLNSAECYYPERNEWRMITAMNTIRSG--------AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp -BCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred -cCceEEEEeCCCCeEeeCCCCCCcccc--------ceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 234688889999999999888754321 22333478888754321 235799999999999999988877
Q ss_pred CC
Q 012227 447 RG 448 (468)
Q Consensus 447 ~~ 448 (468)
+.
T Consensus 253 r~ 254 (308)
T 1zgk_A 253 RS 254 (308)
T ss_dssp CB
T ss_pred cc
Confidence 64
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.73 E-value=2.1e-16 Score=152.96 Aligned_cols=198 Identities=14% Similarity=0.217 Sum_probs=144.5
Q ss_pred ceEEEEcCCCCceEecCCCC--cCCcceeEEEEEEcCCCCCCCeEEEEEEec-----C-------cEEEEeCCCCCccCC
Q 012227 225 RNFYVCNPLTQSFKELPARS--VKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----G-------EYEIYDSLRNSWTRP 290 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~-------~v~vy~s~t~~W~~~ 290 (468)
..++++||.|++|.. ++++ ..+.. .++... +-+|+++|+. . .+++||+.+++|+.+
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~---~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNH---VSLVTK------ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSE---EEEECT------TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred CceEEECCCCCeEec-CCCCCCCCccc---eEEEEE------CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 479999999999986 3332 22222 222222 2478888873 1 288999999999999
Q ss_pred CCCCCCcccCcccccccceEEECCEEEEEEcC--------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD--------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLV 362 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~--------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv 362 (468)
+.+|.. +..+.++.++|++|++++. ...+..||+.+++|+.+ .++|..+..+.++.++|+||++
T Consensus 83 ~~~p~~-------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~ 154 (315)
T 4asc_A 83 PPLPSP-------RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYGHTVLSHMDLVYVI 154 (315)
T ss_dssp CCBSSC-------EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEE
T ss_pred CCCCcc-------hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCcccceeEEEECCEEEEE
Confidence 877654 2346677889999999862 14589999999999987 4667777778888999999999
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC---CCeEEEEECCCCcEEE
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ---MNRLVTYNVMSREWLK 439 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~---~~~l~~YD~~t~~w~~ 439 (468)
++........-++|.+|..+++|+++..||..+.. ..++..++.||+..+... ...+++||+++++|+.
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL--------FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc--------eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 98743333345789999999999999888765332 223344788887543321 2468999999999999
Q ss_pred ccCCccCCC
Q 012227 440 VPGCVVPRG 448 (468)
Q Consensus 440 v~~~~~~~~ 448 (468)
++.+|.++.
T Consensus 227 ~~~~p~~r~ 235 (315)
T 4asc_A 227 FEAFPQERS 235 (315)
T ss_dssp ECCCSSCCB
T ss_pred CCCCCCccc
Confidence 998887764
No 12
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.72 E-value=7.1e-16 Score=148.09 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=147.7
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCC---ccCCCCCCC
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNS---WTRPGSMPS 295 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~---W~~~~~~p~ 295 (468)
..++++||.|++|..+++++..+....+ ...+ -+|+++|+.. .+++||..+++ |+.++.+|.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~--~~~~-------~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~ 101 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVAS--VSLH-------DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV 101 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEE--EEET-------TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccE--EEEC-------CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC
Confidence 4699999999999999987655443322 2233 3788888742 49999999999 999987765
Q ss_pred CcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCc
Q 012227 296 NIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAA 370 (468)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~ 370 (468)
. +....++.++|++|++++. ...+..||+.+++|..+ .++|..+....++.++|+||++++.... .
T Consensus 102 ~-------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~ 172 (301)
T 2vpj_A 102 R-------RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML-GDMQTAREGAGLVVASGVIYCLGGYDGL-N 172 (301)
T ss_dssp C-------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE-EECSSCCBSCEEEEETTEEEEECCBCSS-C
T ss_pred C-------ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEEC-CCCCCCcccceEEEECCEEEEECCCCCC-c
Confidence 4 2345677789999999862 24699999999999998 4566666777888899999999886432 2
Q ss_pred cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCC
Q 012227 371 TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPR 447 (468)
Q Consensus 371 ~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~ 447 (468)
..-++|.+|..+++|+++..||..... ..++..++.||+..+.. ....++.||+++++|+.++.+|.++
T Consensus 173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 173 ILNSVEKYDPHTGHWTNVTPMATKRSG--------AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred ccceEEEEeCCCCcEEeCCCCCccccc--------ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 234688889999999999888755431 22334478888753322 1357999999999999999888776
Q ss_pred C
Q 012227 448 G 448 (468)
Q Consensus 448 ~ 448 (468)
.
T Consensus 245 ~ 245 (301)
T 2vpj_A 245 C 245 (301)
T ss_dssp B
T ss_pred c
Confidence 4
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.71 E-value=6.6e-16 Score=149.71 Aligned_cols=206 Identities=13% Similarity=0.233 Sum_probs=145.9
Q ss_pred eEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----C-------cEEEEeC
Q 012227 216 LVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----G-------EYEIYDS 282 (468)
Q Consensus 216 Ll~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~-------~v~vy~s 282 (468)
.|++.++. .+.++||.+++|...+.+ +.++.. .++... +-+|+++|+. . .+++||+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~---~~~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~ 85 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNH---SSIVTQ------QNQVYVVGGLYVDEENKDQPLQSYFFQLDN 85 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSE---EEEECS------SSCEEEEESSCC-------CCCBEEEEEET
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccc---eEEEEE------CCEEEEECCcccCccccCCCccccEEEEeC
Confidence 44444432 589999999999984432 122222 222221 2468888872 1 1789999
Q ss_pred CCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-------CeEEEEECCCCeEEEeecCCCCCCCCceEEEE
Q 012227 283 LRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC 355 (468)
Q Consensus 283 ~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~ 355 (468)
.+++|+.++.+|.. +..+.++.++|+||++++.. ..+..||+.+++|+.+ .++|..+....++..
T Consensus 86 ~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 86 VSSEWVGLPPLPSA-------RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVISH 157 (318)
T ss_dssp TTTEEEECSCBSSC-------BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEEE
T ss_pred CCCcEEECCCCCcc-------ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEEE
Confidence 99999999877654 23456777899999998631 3588999999999997 466666667778889
Q ss_pred CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEEC
Q 012227 356 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNV 432 (468)
Q Consensus 356 ~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~ 432 (468)
+|+||++++........-++|.+|..+++|+++..||..... ..++..++.||+..+.. ....+++||+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM--------FGVAIHKGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc--------ceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence 999999998754333344788999999999999888754321 22334478888754322 1246899999
Q ss_pred CCCcEEEccCCccCCC
Q 012227 433 MSREWLKVPGCVVPRG 448 (468)
Q Consensus 433 ~t~~w~~v~~~~~~~~ 448 (468)
++++|+.++.+|.++.
T Consensus 230 ~~~~W~~~~~~p~~r~ 245 (318)
T 2woz_A 230 KTNKWEVMTEFPQERS 245 (318)
T ss_dssp TTCCEEECCCCSSCCB
T ss_pred CCCeEEECCCCCCccc
Confidence 9999999998887764
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.69 E-value=3.6e-15 Score=146.81 Aligned_cols=249 Identities=12% Similarity=0.070 Sum_probs=159.0
Q ss_pred EEEEEeeCCCCCcceecCC--CCcccCCCCCCCC-CCcEEEEeeecCceEEEEEcC----------CceEEEEcCCCCce
Q 012227 171 WFYTITHENVNSGAMYDPS--LKKWHHPTISSLP-TKMIILPVASAGGLVCFLDIG----------HRNFYVCNPLTQSF 237 (468)
Q Consensus 171 ~l~~~~~~~~~~~~~~dp~--~~~w~~~~l~~~p-~~~~~~~~~s~~GLl~~~~~~----------~~~~~V~NP~T~~~ 237 (468)
.+|++..........||+. .++|..++ .+| ..+....++..+|.|++.++. ...++++||.|++|
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~--~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQAKDKKWTALA--AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp EEEEECGGGTTCEEEEETTSSSCCEEECC--CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred EEEEEeCcCCCeEEEEccccCCCCeeECC--CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 3555544333445688987 48898653 233 221111144557777665433 24699999999999
Q ss_pred EecCCCC-cCCcceeEEEEEEcCCCCCCCeEEEEEEec----------------------------------------Cc
Q 012227 238 KELPARS-VKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------------------------------------GE 276 (468)
Q Consensus 238 ~~LP~~~-~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------------------------------------~~ 276 (468)
..+++++ ..+....+ ...+ -+|+++|+. ..
T Consensus 99 ~~~~~~~p~~r~~~~~--~~~~-------~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVT--FVHN-------GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF 169 (357)
T ss_dssp EECSCCCSSCCSSEEE--EEET-------TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCE
T ss_pred EECCCCCCcccccceE--EEEC-------CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCccc
Confidence 9999875 44433322 2233 489999873 35
Q ss_pred EEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC------CCeEEEEEC--CCCeEEEeec-CCCCCC
Q 012227 277 YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSYNM--VTGVWKQFII-PTPLHL 347 (468)
Q Consensus 277 v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~fD~--~~~~w~~i~~-P~p~~~ 347 (468)
+++||+.+++|+.++.+|... +....++.++++||++++. ...+..||+ .+++|+.+.. |.+...
T Consensus 170 v~~yd~~~~~W~~~~~~p~~~------~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~ 243 (357)
T 2uvk_A 170 LLSFDPSTQQWSYAGESPWYG------TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243 (357)
T ss_dssp EEEEETTTTEEEEEEECSSCC------CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC
T ss_pred EEEEeCCCCcEEECCCCCCCC------cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc
Confidence 999999999999987766431 1235677789999999752 245788886 8999998732 223334
Q ss_pred CCceEEEECCeEEEEEEEeeCC----------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEec
Q 012227 348 NDHTLAECGGRIMLVGLLTKNA----------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGN 411 (468)
Q Consensus 348 ~~~~l~~~~G~L~lv~~~~~~~----------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~ 411 (468)
....++..+|+||++++..... .....+|.+|..+++|+++..||..+.. ..++..
T Consensus 244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~ 315 (357)
T 2uvk_A 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--------GVSLPW 315 (357)
T ss_dssp BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--------SEEEEE
T ss_pred ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--------ceeEEe
Confidence 4566888999999999875321 1234678889888999999998865432 223445
Q ss_pred CCEEEEEeeeCC----CCeEEEEECCCCcEEEccCCc
Q 012227 412 KGLLMLSLRSRQ----MNRLVTYNVMSREWLKVPGCV 444 (468)
Q Consensus 412 ~~~I~~~~~~~~----~~~l~~YD~~t~~w~~v~~~~ 444 (468)
++.||+..+... ...++.|++++++|.+....+
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 788887544321 246889999999999886544
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.53 E-value=1.3e-13 Score=147.12 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=156.5
Q ss_pred cceecCCCCcccCC-CCCCCCCCcEEEEeeecCceEEEEEcC-----------CceEEEEcCCCCceEecCCCCcCCcce
Q 012227 183 GAMYDPSLKKWHHP-TISSLPTKMIILPVASAGGLVCFLDIG-----------HRNFYVCNPLTQSFKELPARSVKVWSR 250 (468)
Q Consensus 183 ~~~~dp~~~~w~~~-~l~~~p~~~~~~~~~s~~GLl~~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~ 250 (468)
+..|||..++|..+ ++|..+. ...+...+|.|++.++. ...+.+|||.|++|..++.++..+...
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~~~---~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 244 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIVPA---AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 244 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSCCS---EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred cccCCCCCCeeeeeccCCCCce---eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence 56899999999843 3333221 22122227777666431 125899999999999998764443332
Q ss_pred e-EEEEEEcCCCCCCCeEEEEEEecC--cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-CCEEEEEEcC-C--
Q 012227 251 V-AVGMTLNGNSTSSGYKILWVGCDG--EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSD-P-- 323 (468)
Q Consensus 251 ~-~~~~~~d~~~~~~~ykVv~v~~~~--~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~-~-- 323 (468)
+ .+++..+ .+|+++|+.. .+++||+.+++|+.++.|+.. +..+.++.+ +|++|++++. .
T Consensus 245 ~~~~~~~~~-------g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-------R~~~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 245 CPGISMDGN-------GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-------RGYQSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp SCEEEECTT-------SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-------CSSCEEEECTTSCEEEECCCCCSS
T ss_pred cccccCCCC-------CCEEEeCCCCCCceEEecCcCCceeECCCCCcc-------ccccceEEecCCeEEEEeCcccCC
Confidence 2 1222223 5789888743 599999999999999877654 334556777 9999999872 1
Q ss_pred ---CeEEEEECCCCeEEEee----cCCCCCCC------------------------------------------------
Q 012227 324 ---EGIVSYNMVTGVWKQFI----IPTPLHLN------------------------------------------------ 348 (468)
Q Consensus 324 ---~~i~~fD~~~~~w~~i~----~P~p~~~~------------------------------------------------ 348 (468)
..+..||+.+++|..++ .|++....
T Consensus 311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~ 390 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390 (656)
T ss_dssp SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred cccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence 46899999999999862 23221100
Q ss_pred --------CceEEE----ECCeEEEEEEEeeC-----CccEEEEEEEecCCCCeEEEE--eeChhhhhcccCcceEEEEE
Q 012227 349 --------DHTLAE----CGGRIMLVGLLTKN-----AATCVCIWELQKMTLLWKEVD--RMPNIWCLDFYGKHVRMTCL 409 (468)
Q Consensus 349 --------~~~l~~----~~G~L~lv~~~~~~-----~~~~i~Vw~ld~~~~~W~~v~--~mp~~~~~~~~~~~~~~~~~ 409 (468)
....++ .+|+||++++.... ......|+.+|..++.|.++. .||..+.. .-.++
T Consensus 391 ~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-------~~~~~ 463 (656)
T 1k3i_A 391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-------HTSVV 463 (656)
T ss_dssp TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-------CEEEE
T ss_pred ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-------CCeEE
Confidence 011222 38999999875321 112235677788889999987 77754321 01223
Q ss_pred ecCCEEEEEeeeC---------CCCeEEEEECCCCcEEEccCCccCCC
Q 012227 410 GNKGLLMLSLRSR---------QMNRLVTYNVMSREWLKVPGCVVPRG 448 (468)
Q Consensus 410 ~~~~~I~~~~~~~---------~~~~l~~YD~~t~~w~~v~~~~~~~~ 448 (468)
..+|.||+..+.. ....+++||+++++|+.++.++.++.
T Consensus 464 l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~ 511 (656)
T 1k3i_A 464 LPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV 511 (656)
T ss_dssp CTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred CCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence 3367787754321 12568999999999999998887764
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.51 E-value=4.5e-13 Score=143.41 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=139.4
Q ss_pred cCceEEEEEcC----CceEEEEcCCCCceEecC-C-----CCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------
Q 012227 213 AGGLVCFLDIG----HRNFYVCNPLTQSFKELP-A-----RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------- 275 (468)
Q Consensus 213 ~~GLl~~~~~~----~~~~~V~NP~T~~~~~LP-~-----~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------- 275 (468)
.++.|++.++. ...++++||.+++|..++ + ++..+..+. ...+. .+.+|+++||..
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs--~~~~~-----~~~~lyv~GG~~~~~~~~~ 468 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT--FTTIS-----RNNQLLLIGGRKAPHQGLS 468 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE--EEEET-----TTTEEEEECCBSSTTCBCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE--EEEEc-----cCCEEEEEcCCCCCCCccc
Confidence 56666665542 246999999999999988 5 233333322 22231 014789898742
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-CCEEEEEEcCC--CeEEEEECCCCeEEEeec--CCCCCCCCc
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDP--EGIVSYNMVTGVWKQFII--PTPLHLNDH 350 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~--~~i~~fD~~~~~w~~i~~--P~p~~~~~~ 350 (468)
.+++||..+++|+.++.+|.. +..+.++.+ +|+||++++.. ..+..||+.+++|..+.. ++|..+...
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~-------R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHT-------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBC-------CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred cEEEEeCCCCcEEECCCCCCC-------cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce
Confidence 389999999999999887754 334556665 99999998632 269999999999998742 144445555
Q ss_pred eEEEEC---CeEEEEEEEeeCC-ccEEEEEEEecCCCC------eEEEEeeCh-hhhhcccCcceEEEEEecC-CEEEEE
Q 012227 351 TLAECG---GRIMLVGLLTKNA-ATCVCIWELQKMTLL------WKEVDRMPN-IWCLDFYGKHVRMTCLGNK-GLLMLS 418 (468)
Q Consensus 351 ~l~~~~---G~L~lv~~~~~~~-~~~i~Vw~ld~~~~~------W~~v~~mp~-~~~~~~~~~~~~~~~~~~~-~~I~~~ 418 (468)
..++++ |+||++++...+. ...-++|.++..++. |+++..+|. .... ..++..+ |.||+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~--------~~~~~~~~~~iyv~ 613 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG--------SQIKYITPRKLLIV 613 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS--------CEEEEEETTEEEEE
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc--------ceEEEeCCCEEEEE
Confidence 656656 8999999864322 233478888888787 899887642 1111 1223334 888875
Q ss_pred eeeC------CCCeEEEEECCCCcEEEcc
Q 012227 419 LRSR------QMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 419 ~~~~------~~~~l~~YD~~t~~w~~v~ 441 (468)
.+.. ....+++||+++++|+.++
T Consensus 614 GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 614 GGTSPSGLFDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp CCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred CCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence 4321 2457999999999999764
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.33 E-value=1.2e-11 Score=132.34 Aligned_cols=196 Identities=8% Similarity=0.091 Sum_probs=132.2
Q ss_pred cceecCCCCcccCCCCC----CCCCCcEEEEeeec--CceEEEEEcC------CceEEEEcCCCCceEecCCCCcCCcce
Q 012227 183 GAMYDPSLKKWHHPTIS----SLPTKMIILPVASA--GGLVCFLDIG------HRNFYVCNPLTQSFKELPARSVKVWSR 250 (468)
Q Consensus 183 ~~~~dp~~~~w~~~~l~----~~p~~~~~~~~~s~--~GLl~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~ 250 (468)
...||+.+++|..++++ .+|..+.....+.. +|-|++.++. ...++++||.|++|..+++++..+..+
T Consensus 414 v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h 493 (695)
T 2zwa_A 414 ILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH 493 (695)
T ss_dssp EEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC
T ss_pred EEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc
Confidence 56799999999876522 23332211114444 7777666532 246899999999999999887665544
Q ss_pred eEEEEEEcCCCCCCCeEEEEEEecC---cEEEEeCCCCCccCCCC---CCCCcccCcccccccceEEEC---CEEEEEEc
Q 012227 251 VAVGMTLNGNSTSSGYKILWVGCDG---EYEIYDSLRNSWTRPGS---MPSNIKLPVSLNFRSQAVSVD---GILYFMRS 321 (468)
Q Consensus 251 ~~~~~~~d~~~~~~~ykVv~v~~~~---~v~vy~s~t~~W~~~~~---~p~~~~~~~~~~~~~~~v~~~---G~lY~~~~ 321 (468)
.++.+ .+ .+|+++|+.. .+++||+.+++|+.+.. +|.. +..+.+++++ |+||++++
T Consensus 494 ~~~~~-~~-------~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-------r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 494 SACSL-PD-------GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-------SLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp EEEEC-TT-------SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-------CCBSCEEEEETTTTEEEEECC
T ss_pred eEEEE-cC-------CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-------ccceeEEEEeCCCCEEEEECC
Confidence 32221 12 4788888753 59999999999998875 3322 2344556667 89999986
Q ss_pred C-------CCeEEEEECCCCe------EEEeecCCCCCCCCceEEEEC-CeEEEEEEEeeCC--ccEEEEEEEecCCCCe
Q 012227 322 D-------PEGIVSYNMVTGV------WKQFIIPTPLHLNDHTLAECG-GRIMLVGLLTKNA--ATCVCIWELQKMTLLW 385 (468)
Q Consensus 322 ~-------~~~i~~fD~~~~~------w~~i~~P~p~~~~~~~l~~~~-G~L~lv~~~~~~~--~~~i~Vw~ld~~~~~W 385 (468)
. ...+..||+.+++ |..+...++..+....++..+ |+||++++..... ...-+||.+|..+++|
T Consensus 559 ~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 559 GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 3 2469999999999 888743123445567778888 9999999864321 1233688889999999
Q ss_pred EEEEeeChh
Q 012227 386 KEVDRMPNI 394 (468)
Q Consensus 386 ~~v~~mp~~ 394 (468)
+.+ .+|..
T Consensus 639 ~~~-~~p~~ 646 (695)
T 2zwa_A 639 TSI-PISRR 646 (695)
T ss_dssp EEC-CCCHH
T ss_pred EEe-ecccc
Confidence 943 45543
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.21 E-value=7e-11 Score=125.86 Aligned_cols=147 Identities=10% Similarity=0.049 Sum_probs=102.9
Q ss_pred EEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------------cEEEEeCCCCCccCCCCCC
Q 012227 227 FYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------------EYEIYDSLRNSWTRPGSMP 294 (468)
Q Consensus 227 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------------~v~vy~s~t~~W~~~~~~p 294 (468)
+..+||.+++|..+++++.. . ..+++.. .+.+|+++|+.. .+.+||+.+++|+.+..++
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~--~-~~~av~~------~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~ 238 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIV--P-AAAAIEP------TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 238 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSC--C-SEEEEET------TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE
T ss_pred cccCCCCCCeeeeeccCCCC--c-eeEEEEe------cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC
Confidence 55679999999988776441 1 2233332 125888887631 3899999999999887665
Q ss_pred CCcccCcccccccceE-EECCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCcc
Q 012227 295 SNIKLPVSLNFRSQAV-SVDGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAAT 371 (468)
Q Consensus 295 ~~~~~~~~~~~~~~~v-~~~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~ 371 (468)
.... .+....+ ..+|+||++++ ....+..||+.+++|..+ .+++..+..+.++.+ +|+||++++.......
T Consensus 239 ~~~~-----~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 239 TKHD-----MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVF 312 (656)
T ss_dssp CSCC-----CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSC
T ss_pred CCCC-----CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CCCCccccccceEEecCCeEEEEeCcccCCcc
Confidence 4321 1122223 35899999987 334799999999999987 467777777788888 9999999984322222
Q ss_pred EEEEEEEecCCCCeEEE
Q 012227 372 CVCIWELQKMTLLWKEV 388 (468)
Q Consensus 372 ~i~Vw~ld~~~~~W~~v 388 (468)
.-.++.+|..+++|+.+
T Consensus 313 ~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 313 EKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred cccceEeCCCCCcceeC
Confidence 23566778888999997
No 19
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.96 E-value=2.9e-10 Score=78.59 Aligned_cols=44 Identities=23% Similarity=0.613 Sum_probs=39.0
Q ss_pred hhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 117 EIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 117 ~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
..|..||+|++.+||.+||..++.++++|||+|+.++.++.|-+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 45889999999999999999999999999999999999887654
No 20
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.70 E-value=5.8e-06 Score=83.24 Aligned_cols=42 Identities=17% Similarity=0.414 Sum_probs=38.0
Q ss_pred hhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccC-cch
Q 012227 117 EIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKS-HSF 158 (468)
Q Consensus 117 ~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s-~~F 158 (468)
..+..||+||+..||+.|+.++|.+++.|||+|+.++.+ +.+
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~ 55 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 55 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 346889999999999999999999999999999999987 543
No 21
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.69 E-value=4.7e-09 Score=98.56 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=45.1
Q ss_pred hhchhhhccChHHHHHHHHhcCChhhHH-HHhhcccchhhhccCcchhhhhhc
Q 012227 113 AMEQEIWKEFPEDLYEAVIARLPIATFF-RFRSVCQKWNSLLKSHSFSQHCAQ 164 (468)
Q Consensus 113 ~~~~~~w~~LP~DLl~~IL~RLp~~~l~-r~r~VCK~Wr~li~s~~F~~~~~~ 164 (468)
.|+...+..||+|||.+||+|||..+|+ ||++|||+||++++++.|.+.+..
T Consensus 45 ~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~ 97 (297)
T 2e31_A 45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ 97 (297)
T ss_dssp --CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred cccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence 3444567899999999999999999999 999999999999999999886543
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.67 E-value=2.1e-06 Score=86.19 Aligned_cols=233 Identities=12% Similarity=0.161 Sum_probs=118.9
Q ss_pred hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhhh-hcCCCCCCEEEEEeeC-CCC----Cc-ceec---
Q 012227 118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHC-AQVPQGIPWFYTITHE-NVN----SG-AMYD--- 187 (468)
Q Consensus 118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~~-~~~~~~~p~l~~~~~~-~~~----~~-~~~d--- 187 (468)
.+..||+||+..||..|+..+|.+++.|||+|+.++.++.+-+.. .......|........ ... .+ ..|-
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 97 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH 97 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence 367899999999999999999999999999999999998777642 2221111100000000 000 00 0000
Q ss_pred CCCCcccCCCCC---CC---CCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCC
Q 012227 188 PSLKKWHHPTIS---SL---PTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGN 260 (468)
Q Consensus 188 p~~~~w~~~~l~---~~---p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~ 260 (468)
.....|...... .+ ....... +...+.+|+. ....+.+.+||..+++... +... .... ..+.+++
T Consensus 98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~-~~~~g~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h---~~~v--~~~~~~~- 169 (445)
T 2ovr_B 98 RIDTNWRRGELKSPKVLKGHDDHVITC-LQFCGNRIVS-GSDDNTLKVWSAVTGKCLRTLVGH---TGGV--WSSQMRD- 169 (445)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSCEEE-EEEETTEEEE-EETTSCEEEEETTTCCEEEECCCC---SSCE--EEEEEET-
T ss_pred hhhhcccCCCcceeEEecccCCCcEEE-EEEcCCEEEE-EECCCcEEEEECCCCcEEEEEcCC---CCCE--EEEEecC-
Confidence 000112211110 01 1111122 3344444444 4445689999999887553 3321 1111 2333331
Q ss_pred CCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEee
Q 012227 261 STSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFI 340 (468)
Q Consensus 261 ~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~ 340 (468)
-.++..+.++.+.+||..++.-... +... ...-..+..++...+.+.....|..+|+.+++....
T Consensus 170 -----~~l~s~~~dg~i~vwd~~~~~~~~~--~~~h-------~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~- 234 (445)
T 2ovr_B 170 -----NIIISGSTDRTLKVWNAETGECIHT--LYGH-------TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV- 234 (445)
T ss_dssp -----TEEEEEETTSCEEEEETTTTEEEEE--ECCC-------SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE-
T ss_pred -----CEEEEEeCCCeEEEEECCcCcEEEE--ECCC-------CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE-
Confidence 1444444566799999877642211 1100 001123334555555555667899999987754332
Q ss_pred cCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEe
Q 012227 341 IPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 341 ~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld 379 (468)
+.. +......+..+|++.+++.. ...+.+|.++
T Consensus 235 ~~~--~~~~v~~~~~~~~~l~~~~~----dg~i~iwd~~ 267 (445)
T 2ovr_B 235 LMG--HVAAVRCVQYDGRRVVSGAY----DFMVKVWDPE 267 (445)
T ss_dssp EEC--CSSCEEEEEECSSCEEEEET----TSCEEEEEGG
T ss_pred EcC--CcccEEEEEECCCEEEEEcC----CCEEEEEECC
Confidence 211 11222334457777665542 2467888544
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.61 E-value=5.8e-07 Score=90.17 Aligned_cols=43 Identities=14% Similarity=0.362 Sum_probs=39.2
Q ss_pred hhccChHH----HHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 118 IWKEFPED----LYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 118 ~w~~LP~D----Ll~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
.+..||+| |+..||+.|+..+|.++++|||+|+.++.++.+-+
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~ 56 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK 56 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 46789999 99999999999999999999999999998876655
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.70 E-value=1.3e-05 Score=74.38 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=42.9
Q ss_pred hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhhhhc
Q 012227 118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQ 164 (468)
Q Consensus 118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~~~~ 164 (468)
.+..||+||+..||+.|++++|.++.+|||+||.+..++..-+.+..
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 47889999999999999999999999999999999999988876544
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.42 E-value=4.3e-05 Score=73.62 Aligned_cols=45 Identities=22% Similarity=0.592 Sum_probs=39.4
Q ss_pred hhhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227 116 QEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ 160 (468)
Q Consensus 116 ~~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~ 160 (468)
+..|.+||+|++..||.+|+..++.+++.|||+|+.++.++.+..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~ 50 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSS
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhe
Confidence 345899999999999999999999999999999999987765433
No 26
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.30 E-value=0.038 Score=52.65 Aligned_cols=198 Identities=9% Similarity=-0.060 Sum_probs=108.8
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCce-EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSF-KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~ 289 (468)
..++.+++.......+.++|+.|++. ..++... ....+++..+ -++++.. .++.+.++|..+++-..
T Consensus 51 ~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~----~p~~i~~~~~-------g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 51 IRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT----SPRYIHFLSD-------EKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS----SEEEEEEEET-------TEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred EECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC----CCcEEEEeCC-------CeEEEEECCCCeEEEEECCCCeEEE
Confidence 35777777776667899999999887 4565321 1222333222 2777666 45679999998775321
Q ss_pred CCCCCCCcccCcccccccceEEECCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEee
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTK 367 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~ 367 (468)
.-....... ........+..+|.+|+... ....|.++|+.+.+.... ++..... ..+.. -+|+|+++.....
T Consensus 120 ~i~~g~~~~---~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~-i~~g~~p--~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 120 YIECPDMDM---ESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDE-LTIGIQP--TSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEECTTCCT---TTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEE-EECSSCB--CCCEECTTSEEEEEBCCBC
T ss_pred EEEcCCccc---cCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEE-EEcCCCc--cceEEcCCCCEEEEECCCc
Confidence 100111000 00011223336889999875 367899999999876543 3322111 22333 3689887763221
Q ss_pred CCc----cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 368 NAA----TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 368 ~~~----~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
... ..-.|+++|..+.+..+.-.++... ...-.++. +++.+|+... .+++||+++++..
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~-------~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD-------WPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVP 257 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTC-------CCEEEEECTTSCEEEEESS-----SEEEEETTCSSCC
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCC-------CceeEEEecCCCEEEEEcc-----EEEEEECCCCcee
Confidence 000 0125777787666544433333210 01122333 5678876421 7999999998764
No 27
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.15 E-value=0.00015 Score=75.46 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=29.3
Q ss_pred hchhhhccChHHHHHHHHhcCC-hhhHHHHhhcccchhhh
Q 012227 114 MEQEIWKEFPEDLYEAVIARLP-IATFFRFRSVCQKWNSL 152 (468)
Q Consensus 114 ~~~~~w~~LP~DLl~~IL~RLp-~~~l~r~r~VCK~Wr~l 152 (468)
|+...|+.||+|++..||.+|| .+++.+++.|||+|+.+
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 3456799999999999999999 89999999999999988
No 28
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.75 E-value=0.31 Score=46.16 Aligned_cols=186 Identities=11% Similarity=-0.086 Sum_probs=98.9
Q ss_pred CceEEEEcCCCCceEe-cCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCcc-CCCCCCCCccc
Q 012227 224 HRNFYVCNPLTQSFKE-LPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWT-RPGSMPSNIKL 299 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~-LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~-~~~~~p~~~~~ 299 (468)
...+.++||.|++... +... .........-++.+++ -+++++.. .+.+.++|..+++-. .++.. ..
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~------~~lyv~~~~~~~v~viD~~t~~~~~~i~~~----~~ 85 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD------GIGWIVVNNSHVIFAIDINTFKEVGRITGF----TS 85 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET------TEEEEEEGGGTEEEEEETTTCCEEEEEECC----SS
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC------CEEEEEEcCCCEEEEEECcccEEEEEcCCC----CC
Confidence 4579999999998764 2100 0000011112233342 35666554 356999999877642 12111 01
Q ss_pred CcccccccceEE-ECCEEEEEEcCCCeEEEEECCCCeEEE-eecCCCCC--CCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227 300 PVSLNFRSQAVS-VDGILYFMRSDPEGIVSYNMVTGVWKQ-FIIPTPLH--LNDHTLAECGGRIMLVGLLTKNAATCVCI 375 (468)
Q Consensus 300 ~~~~~~~~~~v~-~~G~lY~~~~~~~~i~~fD~~~~~w~~-i~~P~p~~--~~~~~l~~~~G~L~lv~~~~~~~~~~i~V 375 (468)
| ...++ -+|++|+.......|..+|+.+.+... ++.+.... ..-..++..+|+||+... .... .|
T Consensus 86 p------~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~---~~~~--~v 154 (328)
T 3dsm_A 86 P------RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW---SYQN--RI 154 (328)
T ss_dssp E------EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC---TTCC--EE
T ss_pred C------cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC---CCCC--EE
Confidence 1 11222 588999987555789999999987653 33322000 012345557889988742 0112 45
Q ss_pred EEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC--------CCeEEEEECCCCcEEE
Q 012227 376 WELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ--------MNRLVTYNVMSREWLK 439 (468)
Q Consensus 376 w~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~--------~~~l~~YD~~t~~w~~ 439 (468)
+++|..+.+....-.++... .-..+..+|.+|+...... ...+.++|+++++..+
T Consensus 155 ~viD~~t~~~~~~i~~g~~p---------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQP---------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp EEEETTTTEEEEEEECSSCB---------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred EEEECCCCeEEEEEEcCCCc---------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 56676555443322222110 0123344677776543210 2689999999988764
No 29
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.57 E-value=0.29 Score=44.34 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEE
Q 012227 253 VGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSY 329 (468)
Q Consensus 253 ~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~f 329 (468)
-|+.+++ -.++.-.+. ..+.++|..+++=...-.++.. .+.......++.+|.++...+.+.+|
T Consensus 24 qGL~~~~------~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 24 EGLFYLR------GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------YFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEET------TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred ccEEEEC------CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------cceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4666662 255554443 2599999998864322222211 11223345689999999877899999
Q ss_pred ECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227 330 NMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL 409 (468)
Q Consensus 330 D~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~ 409 (468)
|..+.+-..- +|.+. ....++.-+++|++..+ . . +|+.+|+.+.+ .+.++.......-......+.++
T Consensus 91 D~~tl~~~~t-i~~~~--~Gwglt~dg~~L~vSdg-s----~--~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 91 DLATLTPRAR-FRYPG--EGWALTSDDSHLYMSDG-T----A--VIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp ETTTTEEEEE-EECSS--CCCEEEECSSCEEEECS-S----S--EEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE
T ss_pred ECCcCcEEEE-EeCCC--CceEEeeCCCEEEEECC-C----C--eEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe
Confidence 9988664432 33332 33445544667776543 2 2 67888986543 33444322110000111123333
Q ss_pred ecCCEEEEEeeeCCCCeEEEEECCCCcEEEc---cCCccCCC---Cccceeeeeeeeeee
Q 012227 410 GNKGLLMLSLRSRQMNRLVTYNVMSREWLKV---PGCVVPRG---RKRQWIACGTAFHPC 463 (468)
Q Consensus 410 ~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v---~~~~~~~~---~~~~~~~~g~~f~P~ 463 (468)
+|.||... ...+.|.+-|+++++.... .++.-... .....+.-|.||.|.
T Consensus 159 --~G~lyanv--w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 159 --NGELLANV--WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp --TTEEEEEE--TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred --CCEEEEEE--CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 68888644 3457899999999976544 22211100 112346778888773
No 30
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.20 E-value=0.14 Score=48.49 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=101.1
Q ss_pred ecCceEEEEEc--CCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCC-CCCc
Q 012227 212 SAGGLVCFLDI--GHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSL-RNSW 287 (468)
Q Consensus 212 s~~GLl~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~-t~~W 287 (468)
+-+|-|++... ....+.+|+..+++.+.+............+++.-| .-.+++.. .++.+.+|+.. ++..
T Consensus 48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd------g~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA------RQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT------TTEEEEEETTTTEEEEEEECTTSCE
T ss_pred ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC------CCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 34564444433 245799999988776655431111111222333222 12344444 23458888874 3333
Q ss_pred cCCCCCCCCcccCc--ccccccceEEE--CCEEEEEEcCCCeEEEEECC-CCeEEEee-cCCCCCCCCceEEEE-CCe-E
Q 012227 288 TRPGSMPSNIKLPV--SLNFRSQAVSV--DGILYFMRSDPEGIVSYNMV-TGVWKQFI-IPTPLHLNDHTLAEC-GGR-I 359 (468)
Q Consensus 288 ~~~~~~p~~~~~~~--~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~-~~~w~~i~-~P~p~~~~~~~l~~~-~G~-L 359 (468)
+.+......-..+. ........+.+ +|.+|+.......|..||+. +++...+. ...+....-..++.. +|+ |
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 32211100000000 00000112333 67877776666789999988 55554431 111111111123322 677 5
Q ss_pred EEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcc-eEEEEEe-cCCEEEEEeeeCCCCeEEEEECC-CCc
Q 012227 360 MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKH-VRMTCLG-NKGLLMLSLRSRQMNRLVTYNVM-SRE 436 (468)
Q Consensus 360 ~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~-~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~-t~~ 436 (468)
+++. .....+.+|.++..+++++.+..+..... .+.+.. ..-.++. ++..||+... ..+.+.+||++ +++
T Consensus 202 ~v~~----~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 202 FLAG----ELSSQIASLKYDTQTGAFTQLGIVKTIPA-DYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGH 274 (347)
T ss_dssp EEEE----TTTTEEEEEEEETTTTEEEEEEEEESSCT-TCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGC
T ss_pred EEEe----CCCCEEEEEEecCCCCceEEeeeeeecCC-CCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCc
Confidence 5433 23467899999876667666544421110 000000 1122333 4456766432 24678899986 335
Q ss_pred EEEccC
Q 012227 437 WLKVPG 442 (468)
Q Consensus 437 w~~v~~ 442 (468)
++.+..
T Consensus 275 ~~~~~~ 280 (347)
T 3hfq_A 275 LTLIQQ 280 (347)
T ss_dssp EEEEEE
T ss_pred EEEeEE
Confidence 555443
No 31
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.09 E-value=0.32 Score=44.54 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=94.7
Q ss_pred EEEEEEec-C--cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeE-EEeecC
Q 012227 267 KILWVGCD-G--EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW-KQFIIP 342 (468)
Q Consensus 267 kVv~v~~~-~--~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w-~~i~~P 342 (468)
.++.-.+. + .+.++|..+++=...-.++.. .+.......++.+|.++...+.+.+||+++.+- ..++.+
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~ 126 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD 126 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC
Confidence 56654443 2 489999998763322112211 111223456889999998778999999988654 344332
Q ss_pred CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC
Q 012227 343 TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR 422 (468)
Q Consensus 343 ~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 422 (468)
. .+..++.-+++|++..+ . . .||.+|+.+.+ .+.+++...-.........+.++ +|.||+.. .
T Consensus 127 --~--eG~glt~dg~~L~~SdG-s----~--~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~--w 189 (262)
T 3nol_A 127 --G--EGWGLTHNDQYLIMSDG-T----P--VLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANV--W 189 (262)
T ss_dssp --S--CCCCEEECSSCEEECCS-S----S--EEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEE--T
T ss_pred --C--CceEEecCCCEEEEECC-C----C--eEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEE--c
Confidence 2 23344544566766542 1 2 68888986443 33444322110000100123443 67888643 3
Q ss_pred CCCeEEEEECCCCcEEEc---cCCccCC--CCccceeeeeeeeeee
Q 012227 423 QMNRLVTYNVMSREWLKV---PGCVVPR--GRKRQWIACGTAFHPC 463 (468)
Q Consensus 423 ~~~~l~~YD~~t~~w~~v---~~~~~~~--~~~~~~~~~g~~f~P~ 463 (468)
..+.|.+-|+++++.... +++.-.. ......+.-|.||.|.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 467899999999976544 2221110 0112346778888774
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.4 Score=45.37 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=90.8
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL 303 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~ 303 (468)
...+.|||..+++...+.....+.... ..+.+. +......++..+.++.+.+||..++.|..+........
T Consensus 32 dg~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----- 102 (379)
T 3jrp_A 32 DKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA--HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA----- 102 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----
T ss_pred CCcEEEEecCCCcceeeeEecCCCCcE--EEEEeC--CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc-----
Confidence 346777777644443332221111122 223332 11112345544556779999999887765433221100
Q ss_pred ccccceEEE--C--CEEEEEEcCCCeEEEEECCCCeE-EEeecCCCCCCCCc-eEEEE--------------CCeEEEEE
Q 012227 304 NFRSQAVSV--D--GILYFMRSDPEGIVSYNMVTGVW-KQFIIPTPLHLNDH-TLAEC--------------GGRIMLVG 363 (468)
Q Consensus 304 ~~~~~~v~~--~--G~lY~~~~~~~~i~~fD~~~~~w-~~i~~P~p~~~~~~-~l~~~--------------~G~L~lv~ 363 (468)
.-..+.+ + |.+.+.+.....|..||+.+..- ....... +.... .+... +|.+++++
T Consensus 103 --~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 103 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred --ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 1112222 2 55555555566888999877621 1111111 11111 11111 46666655
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecC---CEEEEEeeeCCCCeEEEEECCCC
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNK---GLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~---~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
.. ...+.+|.+......|..+..+.... + .+.-.++..+ +.+++... ..+.+.+||+.++
T Consensus 179 ~~----dg~i~i~d~~~~~~~~~~~~~~~~h~-----~-~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 179 GA----DNLVKIWKYNSDAQTYVLESTLEGHS-----D-WVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNE 241 (379)
T ss_dssp ET----TSCEEEEEEETTTTEEEEEEEECCCS-----S-CEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESST
T ss_pred eC----CCeEEEEEecCCCcceeeEEEEeccc-----C-cEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCC
Confidence 32 24789998887666777666553211 0 0111122223 44444332 3467889998876
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.74 E-value=0.26 Score=48.26 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=72.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~ 290 (468)
|.+++|.+.. .+.++|||..|++...+-....+......+. +.+ . .+.++.+ .++.+.+||..+++-..
T Consensus 114 S~~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~--fsp---d--g~~lasgs~Dg~v~iWd~~~~~~~~- 183 (420)
T 4gga_A 114 SSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIK---E--GNYLAVGTSSAEVQLWDVQQQKRLR- 183 (420)
T ss_dssp CTTSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECT---T--SSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred CCCCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEE--ECC---C--CCEEEEEECCCeEEEEEcCCCcEEE-
Confidence 3456665554 3489999999998775433222221222333 331 1 2333344 45679999988764211
Q ss_pred CCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE--ECCeEEEEEEEeeC
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE--CGGRIMLVGLLTKN 368 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~--~~G~L~lv~~~~~~ 368 (468)
.+... .....++..++.+...+.....+..+|..+.......+.. +........ -+|+..+.+..
T Consensus 184 -~~~~h-------~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~--h~~~~~~~~~~~~g~~l~s~~~--- 250 (420)
T 4gga_A 184 -NMTSH-------SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGN--- 250 (420)
T ss_dssp -EECCC-------SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEET---
T ss_pred -EEeCC-------CCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc--cccceeeeeecCCCCeeeeeec---
Confidence 11100 0112244456666666666667888887765433221211 111111122 15555544431
Q ss_pred CccEEEEEEEecC
Q 012227 369 AATCVCIWELQKM 381 (468)
Q Consensus 369 ~~~~i~Vw~ld~~ 381 (468)
...+.||.....
T Consensus 251 -D~~v~i~~~~~~ 262 (420)
T 4gga_A 251 -DNLVNVWPSAPG 262 (420)
T ss_dssp -TSCEEEEESSCC
T ss_pred -cccceEEeeccc
Confidence 246788866543
No 34
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.66 E-value=1.2 Score=40.41 Aligned_cols=187 Identities=12% Similarity=0.167 Sum_probs=97.0
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~ 290 (468)
..+|.+++.......++++|+ +++...+..... .....++..++ . .++++... ...+.+|+. ++.....
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~--~---g~l~v~~~~~~~i~~~~~-~g~~~~~ 176 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK---GSYPSFITLGS--D---NALWFTENQNNAIGRITE-SGDITEF 176 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---TCCEEEEEECT--T---SCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCC---CCCCceEEEcC--C---CCEEEEeCCCCEEEEEcC-CCcEEEe
Confidence 346777777665568999999 777665433211 11223455552 1 24554443 345888888 6665432
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEE-ECCeEEEEEEEe
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAE-CGGRIMLVGLLT 366 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~-~~G~L~lv~~~~ 366 (468)
. .+.... ...++.+ +|.+|+.......|..||+ ++++..+..+.. .... .++. -+|+|++....
T Consensus 177 ~-~~~~~~-------~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~- 244 (299)
T 2z2n_A 177 K-IPTPAS-------GPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP--NARPHAITAGAGIDLWFTEWG- 244 (299)
T ss_dssp E-CSSTTC-------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST--TCCEEEEEECSTTCEEEEETT-
T ss_pred e-CCCCCC-------cceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC--CCCceeEEECCCCCEEEeccC-
Confidence 1 111100 1123334 5788887765678999999 777766544421 1222 2333 26888875421
Q ss_pred eCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 367 KNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
.. .|++++. +.....+ .++... ....-.++ .++.||+... .+.+..||+++++.
T Consensus 245 ---~~--~i~~~d~-~g~~~~~-~~~~~~------~~~~~i~~-~~g~l~v~~~---~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 245 ---AN--KIGRLTS-NNIIEEY-PIQIKS------AEPHGICF-DGETIWFAME---CDKIGKLTLIKDNM 298 (299)
T ss_dssp ---TT--EEEEEET-TTEEEEE-ECSSSS------CCEEEEEE-CSSCEEEEET---TTEEEEEEEC----
T ss_pred ---Cc--eEEEECC-CCceEEE-eCCCCC------CccceEEe-cCCCEEEEec---CCcEEEEEcCcccC
Confidence 12 4555565 2332222 122110 01111223 6778877532 36899999988754
No 35
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.62 E-value=1 Score=40.98 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=100.0
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~ 290 (468)
..+|-+++.......++++|+. ++...+..+... ....++..+ + +.++++... ...+..|+.. +.....
T Consensus 70 ~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~--~---~g~l~v~~~~~~~i~~~~~~-g~~~~~ 139 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEG--L---NGDIWFTQLNGDRIGKLTAD-GTIYEY 139 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEEC--S---TTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC---CCCccceEC--C---CCCEEEEccCCCeEEEECCC-CCEEEc
Confidence 3567777777655689999998 776654332111 122344455 2 124554443 3458888876 544322
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEEEe
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGLLT 366 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~~~ 366 (468)
. .+.... ....+.+ +|.+|+.......|..||+ ++++..+..|.. .... .++.. +|.|++....
T Consensus 140 ~-~~~~~~-------~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~--~~~~~~i~~d~~g~l~v~~~~- 207 (300)
T 2qc5_A 140 D-LPNKGS-------YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN--AAAPVGITSGNDGALWFVEIM- 207 (300)
T ss_dssp E-CSSTTC-------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST--TCCEEEEEECTTSSEEEEETT-
T ss_pred c-CCCCCC-------CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC--CCCcceEEECCCCCEEEEccC-
Confidence 1 111100 1123333 5888887765678999999 666665544322 1222 23332 6888876421
Q ss_pred eCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 367 KNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
.. .|++++. ++.+.... ++... . ...-.++..+|.||+.. ...+.+..||+ +++...+
T Consensus 208 ---~~--~i~~~~~-~g~~~~~~-~~~~~----~--~~~~i~~d~~g~l~v~~--~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 208 ---GN--KIGRITT-TGEISEYD-IPTPN----A--RPHAITAGKNSEIWFTE--WGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp ---TT--EEEEECT-TCCEEEEE-CSSTT----C--CEEEEEECSTTCEEEEE--TTTTEEEEECT-TSCEEEE
T ss_pred ---CC--EEEEEcC-CCcEEEEE-CCCCC----C--CceEEEECCCCCEEEec--cCCCeEEEECC-CCcEEEE
Confidence 12 4556666 45554432 22111 0 01122334456787643 23468999998 5666544
No 36
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.54 E-value=0.22 Score=45.17 Aligned_cols=108 Identities=10% Similarity=0.009 Sum_probs=71.6
Q ss_pred EEECCEEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227 310 VSVDGILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 310 v~~~G~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~ 387 (468)
.+.+|.+|.-++. ...|..+|+++++-..- .+.+.......+...+++||++....+ .+|++|. ..-+.
T Consensus 27 ~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~fgeGi~~~~~~ly~ltw~~~------~v~v~D~--~tl~~ 97 (243)
T 3mbr_X 27 FYLRGHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYFGAGIVAWRDRLIQLTWRNH------EGFVYDL--ATLTP 97 (243)
T ss_dssp EEETTEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSS------EEEEEET--TTTEE
T ss_pred EEECCEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcceeEEEEeCCEEEEEEeeCC------EEEEEEC--CcCcE
Confidence 3457888887763 35799999999876542 444444444567778999999864332 6788887 44556
Q ss_pred EEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 388 VDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 388 v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
+.+++... . .+.+..+++.+|++.+ ...+..+|+++.+.
T Consensus 98 ~~ti~~~~----~----Gwglt~dg~~L~vSdg---s~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 98 RARFRYPG----E----GWALTSDDSHLYMSDG---TAVIRKLDPDTLQQ 136 (243)
T ss_dssp EEEEECSS----C----CCEEEECSSCEEEECS---SSEEEEECTTTCCE
T ss_pred EEEEeCCC----C----ceEEeeCCCEEEEECC---CCeEEEEeCCCCeE
Confidence 66665321 1 1344556778877532 56899999998654
No 37
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.46 E-value=0.85 Score=41.81 Aligned_cols=173 Identities=9% Similarity=0.005 Sum_probs=94.8
Q ss_pred EEEEEEec-CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC
Q 012227 267 KILWVGCD-GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL 345 (468)
Q Consensus 267 kVv~v~~~-~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~ 345 (468)
.++...+. +.+.++|..+++=...- ++.. .+.......++.+|.++...+.+.+||+++.+-..- +|.+.
T Consensus 66 ~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t-i~~~~ 136 (268)
T 3nok_A 66 HFFESTGHQGTLRQLSLESAQPVWME-RLGN-------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT-TRYSG 136 (268)
T ss_dssp EEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE-EECSS
T ss_pred EEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE-EeCCC
Confidence 55544443 35899999887632211 2211 111223345789999988778999999998665431 23322
Q ss_pred CCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCC
Q 012227 346 HLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMN 425 (468)
Q Consensus 346 ~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~ 425 (468)
....++.-+++||+..+ . . .|+.+|+.+. +.+.+++...-..-......+.++ +|.||+.. ...+
T Consensus 137 --eGwGLt~Dg~~L~vSdG-s----~--~l~~iDp~T~--~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanv--w~s~ 201 (268)
T 3nok_A 137 --EGWGLCYWNGKLVRSDG-G----T--MLTFHEPDGF--ALVGAVQVKLRGQPVELINELECA--NGVIYANI--WHSS 201 (268)
T ss_dssp --CCCCEEEETTEEEEECS-S----S--EEEEECTTTC--CEEEEEECEETTEECCCEEEEEEE--TTEEEEEE--TTCS
T ss_pred --ceeEEecCCCEEEEECC-C----C--EEEEEcCCCC--eEEEEEEeCCCCcccccccccEEe--CCEEEEEE--CCCC
Confidence 23456666777877543 2 2 6788898654 344444322111001011123444 67888643 3467
Q ss_pred eEEEEECCCCcEEEccCCc-c----C-CCCccceeeeeeeeeee
Q 012227 426 RLVTYNVMSREWLKVPGCV-V----P-RGRKRQWIACGTAFHPC 463 (468)
Q Consensus 426 ~l~~YD~~t~~w~~v~~~~-~----~-~~~~~~~~~~g~~f~P~ 463 (468)
.|.+-|+++++....=.+. + + .......+.-|.||.|.
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 8999999999765442221 1 0 00112236778888774
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.37 E-value=0.0047 Score=64.11 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=31.2
Q ss_pred ccChHHHHHHHHhcC-ChhhHHHHhhcccchhhh
Q 012227 120 KEFPEDLYEAVIARL-PIATFFRFRSVCQKWNSL 152 (468)
Q Consensus 120 ~~LP~DLl~~IL~RL-p~~~l~r~r~VCK~Wr~l 152 (468)
..||||++..||.+| +.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999987
No 39
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.21 E-value=0.82 Score=43.71 Aligned_cols=189 Identities=11% Similarity=0.103 Sum_probs=93.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~ 292 (468)
+..|++.......+.+||..+++....-.... .. .++.+.+ ..-.+++.+. ++.+.+||..++.-...-.
T Consensus 43 g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v--~~~~~sp----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 113 (391)
T 1l0q_A 43 GTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SP--QGVAVSP----DGKQVYVTNMASSTLSVIDTTSNTVAGTVK 113 (391)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SE--EEEEECT----TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEECCCCCeEEEEECCCCeEEEEEECCC---Cc--cceEECC----CCCEEEEEECCCCEEEEEECCCCeEEEEEe
Confidence 33565666555689999999887654322111 11 2333331 1124444443 3569999998765422111
Q ss_pred CCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKN 368 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~ 368 (468)
... ....+.+ +| .+|+.+.....|..+|+.+.+.... ++.... ...+... +|+..++.. .
T Consensus 114 ~~~----------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~--~~~~~~~~dg~~l~~~~---~ 177 (391)
T 1l0q_A 114 TGK----------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSVGRS--PKGIAVTPDGTKVYVAN---F 177 (391)
T ss_dssp CSS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EECCSS--EEEEEECTTSSEEEEEE---T
T ss_pred CCC----------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-EecCCC--cceEEECCCCCEEEEEe---C
Confidence 000 1112323 44 4667776667899999998876543 222211 1122222 454433332 1
Q ss_pred CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 369 AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 369 ~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
....+.+|.+. +. +.+..++... ...-.++. .+..|++.......+.+.+||+.+++..
T Consensus 178 ~~~~v~~~d~~--~~--~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 178 DSMSISVIDTV--TN--SVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp TTTEEEEEETT--TT--EEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CCCEEEEEECC--CC--eEEEEEecCC-------CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 23467777443 22 2222222110 01112233 4456655432113568899999877543
No 40
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.08 E-value=2.4 Score=40.78 Aligned_cols=208 Identities=10% Similarity=0.057 Sum_probs=98.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecC-CC--CcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELP-AR--SVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP-~~--~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
+|-+++.......+.|||..++....-. .. ...........+.+.+ .+...++..+.++.+.+||..++.....
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 169 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP---TAQNVLLSAGCDNVILVWDVGTGAAVLT 169 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS---SBTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc---CCCCEEEEEcCCCEEEEEECCCCCccEE
Confidence 5555555555568999998887432110 00 0000111122333331 1123444445566799999887654321
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~ 367 (468)
-..... . ..-..+.+ +|.+.+.+.....|..||+.+.+-...............+.-. +|++++++. ..
T Consensus 170 ~~~~~~-~------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~ 241 (402)
T 2aq5_A 170 LGPDVH-P------DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SR 241 (402)
T ss_dssp ECTTTC-C------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CT
T ss_pred EecCCC-C------CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cC
Confidence 000000 0 01112223 5665566656678999999987654431122111111223322 677666552 11
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCc--EEEccC
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSRE--WLKVPG 442 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~--w~~v~~ 442 (468)
.....+.||.+......-. ...+... .. ....++. ++..+++.. ...+.+.+||+.+++ ...+..
T Consensus 242 ~~d~~i~iwd~~~~~~~~~-~~~~~~~------~~-v~~~~~s~~~~~l~~~g--~~dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLS-LQELDTS------SG-VLLPFFDPDTNIVYLCG--KGDSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp TCCEEEEEEETTBCSSCSE-EEECCCC------SS-CEEEEEETTTTEEEEEE--TTCSCEEEEEECSSTTCEEEEEE
T ss_pred CCCceEEEEcCccccCCce-EEeccCC------Cc-eeEEEEcCCCCEEEEEE--cCCCeEEEEEecCCCcceEeecc
Confidence 2236788896654322111 1111110 00 1112233 455665432 235689999999887 555544
No 41
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.07 E-value=2.3 Score=39.89 Aligned_cols=192 Identities=11% Similarity=0.083 Sum_probs=95.8
Q ss_pred eeecCceEEEEEcCCceEEEEcCCC----CceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLT----QSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSL 283 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T----~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~ 283 (468)
....+|.|++.+....+++++++.+ .... .++. ... .. .++.+| .. .-+||+... ...+.+++..
T Consensus 37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~--~p--~glavd--~~--~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ--AP--DGLAVD--WI--HSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCS--CC--CEEEEE--TT--TTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCC--Cc--CEEEEe--ec--CCeEEEEECCCCEEEEEeCC
Confidence 4446788999888777899999876 2222 2321 111 11 234444 11 236666543 3458888876
Q ss_pred CCCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CC
Q 012227 284 RNSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GG 357 (468)
Q Consensus 284 t~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G 357 (468)
...=+.+.. .... ...++.+ +|.+||..... ..|..+|+....-..+ ..... ..-..++.. ++
T Consensus 108 g~~~~~~~~--~~~~-------~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~-~~~~~-~~P~gla~d~~~~ 176 (316)
T 1ijq_A 108 GVKRKTLFR--ENGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSG 176 (316)
T ss_dssp SSSEEEEEE--CTTC-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-ECSSC-SCEEEEEEETTTT
T ss_pred CCceEEEEE--CCCC-------CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-EECCC-CCceEEEEeccCC
Confidence 432111100 0001 1223333 68999988653 6899999976554433 11111 111234443 68
Q ss_pred eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
+||++... .. .|++++.....=..+...+... ..+......++.||+.. ...+.|..+|..+++
T Consensus 177 ~lY~~D~~----~~--~I~~~d~dg~~~~~~~~~~~~~-------~~P~giav~~~~ly~~d--~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 177 RLYWVDSK----LH--SISSIDVNGGNRKTILEDEKRL-------AHPFSLAVFEDKVFWTD--IINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETT----TT--EEEEEETTSCSCEEEEECTTTT-------SSEEEEEEETTEEEEEE--TTTTEEEEEETTTCC
T ss_pred EEEEEECC----CC--eEEEEecCCCceEEEeecCCcc-------CCcEEEEEECCEEEEEE--CCCCeEEEEeCCCCc
Confidence 89987532 23 4555565422222222211111 01222222468887743 345789999986554
No 42
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.88 E-value=2 Score=38.49 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=94.6
Q ss_pred ecCceEEE-EEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCF-LDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~-~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
..+|-+++ .+.....+.++|+-++....++..... .. .++.++ +. .++++....+.+.+|+..++.-...
T Consensus 32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p--~~i~~~--~~---g~l~v~~~~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 32 DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY--QP--QGLAVD--GA---GTVYVTDFNNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CTTCCEEEEECSSSCEEEEECC-----EECCCCSCC--SC--CCEEEC--TT---CCEEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC--Cc--ceeEEC--CC---CCEEEEcCCCEEEEEeCCCceEeee
Confidence 35666777 655556899999988776665432211 11 234444 21 2355554445688998876543322
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~ 367 (468)
... ... ...++.+ +|.+|+.......|..||..+...... .......-..++.. +|+||+....
T Consensus 103 ~~~--~~~-------~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l~v~~~~-- 169 (270)
T 1rwi_B 103 PFD--GLN-------YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNVYVTDTD-- 169 (270)
T ss_dssp CCC--SCS-------SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCEEEEEGG--
T ss_pred ecC--CcC-------CCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCCCCEEEEECC--
Confidence 110 000 1123333 688888776556899998776554332 11111111234443 6888876421
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
.. .|.+++.....-... ... . + ....-.++..+|.||+.. ...+.+..||++++....+
T Consensus 170 --~~--~i~~~~~~~~~~~~~-~~~-~----~--~~p~~i~~d~~g~l~v~~--~~~~~v~~~~~~~~~~~~~ 228 (270)
T 1rwi_B 170 --NN--RVVKLEAESNNQVVL-PFT-D----I--TAPWGIAVDEAGTVYVTE--HNTNQVVKLLAGSTTSTVL 228 (270)
T ss_dssp --GT--EEEEECTTTCCEEEC-CCS-S----C--CSEEEEEECTTCCEEEEE--TTTSCEEEECTTCSCCEEC
T ss_pred --CC--EEEEEecCCCceEee-ccc-C----C--CCceEEEECCCCCEEEEE--CCCCcEEEEcCCCCcceee
Confidence 12 344556543321111 000 0 0 001122344456787643 2346799999988765543
No 43
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.88 E-value=2.2 Score=38.75 Aligned_cols=200 Identities=10% Similarity=0.083 Sum_probs=99.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcC-CcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCcc
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK-VWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSWT 288 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W~ 288 (468)
..+|-+++.+.....+.++|+..+....++..... .......++.++ . .+.++++... ...+.+|+.....-.
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~--~--~~g~l~v~~~~~~~~i~~~d~~g~~~~ 113 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV--R--NSGDIIVTERSPTHQIQIYNQYGQFVR 113 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEE--T--TTTEEEEEECGGGCEEEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEE--c--CCCeEEEEcCCCCCEEEEECCCCcEEE
Confidence 34677777766566899999886555555432110 001122344442 1 1235665553 456888984432211
Q ss_pred CCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGL 364 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~ 364 (468)
.+.. . ... ...++.+ +|.+|+.......|..||...+....+..+ .....+ .++.. +|+||+...
T Consensus 114 ~~~~-~-~~~-------~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 114 KFGA-T-ILQ-------HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--KHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EECT-T-TCS-------CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--TTCSSEEEEEECSSSEEEEEEG
T ss_pred EecC-c-cCC-------CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--CccCCcEEEEECCCCCEEEEEC
Confidence 1111 0 000 1123333 688888776667899999877665554322 111222 23332 688887542
Q ss_pred EeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCC-eEEEEECCCCcEEEcc
Q 012227 365 LTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMN-RLVTYNVMSREWLKVP 441 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~-~l~~YD~~t~~w~~v~ 441 (468)
. ...+.+| +.. ... +..+...- .+. ...-.++..+|.||+... ..+ .|.+||.+.+....+.
T Consensus 183 ~----~~~i~~~--~~~-g~~--~~~~~~~g--~~~--~p~~i~~d~~G~l~v~~~--~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 183 R----AHCVKVF--NYE-GQY--LRQIGGEG--ITN--YPIGVGINSNGEILIADN--HNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp G----GTEEEEE--ETT-CCE--EEEESCTT--TSC--SEEEEEECTTCCEEEEEC--SSSCEEEEECTTSCEEEEEE
T ss_pred C----CCEEEEE--cCC-CCE--EEEEccCC--ccC--CCcEEEECCCCCEEEEeC--CCCEEEEEECCCCCEEEEEc
Confidence 1 2344554 543 222 22222110 000 011234444667776432 233 8999998877666553
No 44
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.67 E-value=1.9 Score=39.89 Aligned_cols=205 Identities=7% Similarity=0.029 Sum_probs=98.6
Q ss_pred cCceEEEEEcCCceEEEEcCC---CCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCC-CC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPL---TQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLR-NS 286 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~---T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t-~~ 286 (468)
.+..|++.......+.+||.. +.+... ++... ... ++.+++ .+ -.+++.. .++.+.+|+..+ ++
T Consensus 94 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----~~~--~~~~s~---dg-~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 94 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD----GCH--SANISP---DN-RTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT----TBC--CCEECT---TS-SEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCCEEEEEecCCCeEEEEECCCCccccccccccCCC----Cce--EEEECC---CC-CEEEEecCCCCEEEEEEecCCCc
Confidence 333565665555678888873 322221 22111 111 122331 11 2344444 456799999876 55
Q ss_pred ccCCC--CCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECC--CCeEEE---ee-cCCCCC-CCCc-eEE
Q 012227 287 WTRPG--SMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMV--TGVWKQ---FI-IPTPLH-LNDH-TLA 353 (468)
Q Consensus 287 W~~~~--~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~--~~~w~~---i~-~P~p~~-~~~~-~l~ 353 (468)
..... ..... . ......+.+ +|. +|+.......|..||+. ++++.. +. +|.... .... .+.
T Consensus 164 ~~~~~~~~~~~~----~--~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 164 LVAQDPAEVTTV----E--GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp EEEEEEEEEECS----T--TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred eeeecccccccC----C--CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 53221 00000 0 000112223 454 67766556789999984 344432 21 222111 1111 222
Q ss_pred EE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEE-
Q 012227 354 EC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTY- 430 (468)
Q Consensus 354 ~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~Y- 430 (468)
.. +|+..++.. .....+.+|.++..+..++.+..++.... ..-.++. ++..||+.. ...+.+.+|
T Consensus 238 ~s~dg~~l~v~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~--~~~~~v~v~~ 305 (343)
T 1ri6_A 238 ITPDGRHLYACD---RTASLITVFSVSEDGSVLSKEGFQPTETQ-------PRGFNVDHSGKYLIAAG--QKSHHISVYE 305 (343)
T ss_dssp ECTTSSEEEEEE---TTTTEEEEEEECTTSCCEEEEEEEECSSS-------CCCEEECTTSSEEEEEC--TTTCEEEEEE
T ss_pred ECCCCCEEEEEe---cCCCEEEEEEEcCCCCceEEeeeecCCCc-------cceEEECCCCCEEEEec--CCCCeEEEEE
Confidence 22 465444332 22367899988865667777766643211 0112333 455666543 223566666
Q ss_pred -ECCCCcEEEccCCcc
Q 012227 431 -NVMSREWLKVPGCVV 445 (468)
Q Consensus 431 -D~~t~~w~~v~~~~~ 445 (468)
|.++++++.+...+.
T Consensus 306 ~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 306 IVGEQGLLHEKGRYAV 321 (343)
T ss_dssp EETTTTEEEEEEEEEC
T ss_pred EcCCCceeeEcccccc
Confidence 777888888866554
No 45
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.6 Score=49.83 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL 303 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~ 303 (468)
.+.+.|||..++++..+.....+.... .++.+. +..+.-.++..+.++.+.+||..++.|..+........
T Consensus 30 dg~I~vwd~~~~~~~~~~~l~~h~~~V--~~l~~s--~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~----- 100 (753)
T 3jro_A 30 DKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA--HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA----- 100 (753)
T ss_dssp TTEEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----
T ss_pred CCcEEEEecCCCCCccceeccCCcCce--EEEEec--CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC-----
Confidence 346777777655544433222222222 233333 22223455555556779999998887754432221100
Q ss_pred ccccceEEE--C--CEEEEEEcCCCeEEEEECCCCeEE-EeecCCCCCCCCceEEEE---------------CCeEEEEE
Q 012227 304 NFRSQAVSV--D--GILYFMRSDPEGIVSYNMVTGVWK-QFIIPTPLHLNDHTLAEC---------------GGRIMLVG 363 (468)
Q Consensus 304 ~~~~~~v~~--~--G~lY~~~~~~~~i~~fD~~~~~w~-~i~~P~p~~~~~~~l~~~---------------~G~L~lv~ 363 (468)
.-..+.+ + |.+.+.+...+.|..||+.+..-. ..... .+......+.. +|.+.+++
T Consensus 101 --~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg 176 (753)
T 3jro_A 101 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176 (753)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE--CCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred --CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee--cCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence 1112223 2 556666666678889998765211 11010 01111111111 35555554
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecC---CEEEEEeeeCCCCeEEEEECCCC
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNK---GLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~---~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
.. ...+.+|.+......+..+..+.... + .+.-.++..+ +.+++... ..+.+.+||+.++
T Consensus 177 s~----dg~I~iwd~~~~~~~~~~~~~~~~h~-----~-~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 177 GA----DNLVKIWKYNSDAQTYVLESTLEGHS-----D-WVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNE 239 (753)
T ss_dssp ET----TSCEEEEEEETTTTEEEEEEEECCCS-----S-CEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSS
T ss_pred EC----CCeEEEEeccCCcccceeeeeecCCC-----C-cEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCC
Confidence 32 24689999887666676665553211 0 0111122223 45544332 3467888988875
No 46
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.44 E-value=2.3 Score=38.98 Aligned_cols=160 Identities=10% Similarity=-0.003 Sum_probs=86.4
Q ss_pred EEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEE
Q 012227 253 VGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSY 329 (468)
Q Consensus 253 ~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~f 329 (468)
-|+.+++ . .++++..+. ..+.++|..+++=...-.++.. .+.......++.+|+.....+.+.+|
T Consensus 24 ~Gl~~~~--d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-------~fgeGi~~~g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 24 QGLVYAE--N---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-------YFGEGLTLLNEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp EEEEECS--T---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEETTEEEEEETTCSEEEEE
T ss_pred ccEEEeC--C---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-------cceEEEEEeCCEEEEEEecCCEEEEE
Confidence 4566652 1 267765542 4599999998763221111111 11122334577999999877899999
Q ss_pred ECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227 330 NMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL 409 (468)
Q Consensus 330 D~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~ 409 (468)
|+.+.+-..- +|.+ ......+..-+++||+..+ .. .|+.+|..+. +.+..++.............+.+.
T Consensus 92 D~~t~~v~~~-i~~g-~~~g~glt~Dg~~l~vs~g-----s~--~l~viD~~t~--~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 92 DRRTLSNIKN-FTHQ-MKDGWGLATDGKILYGSDG-----TS--ILYEIDPHTF--KLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp ETTTTEEEEE-EECC-SSSCCEEEECSSSEEEECS-----SS--EEEEECTTTC--CEEEEEECEETTEECCCEEEEEEE
T ss_pred ECCCCcEEEE-EECC-CCCeEEEEECCCEEEEECC-----CC--eEEEEECCCC--cEEEEEEECCCCcccccceeEEEE
Confidence 9998654332 3333 1122334433556775431 12 6778887543 444444422111000001123333
Q ss_pred ecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 410 GNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 410 ~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
++.||+.. ...+.+.+-|+++++...
T Consensus 161 --dg~lyvn~--~~~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 161 --NGEVWANI--WQTDCIARISAKDGTLLG 186 (266)
T ss_dssp --TTEEEEEE--TTSSEEEEEETTTCCEEE
T ss_pred --CCEEEEec--CCCCeEEEEECCCCcEEE
Confidence 57888643 345789999999987543
No 47
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.42 E-value=4 Score=39.73 Aligned_cols=192 Identities=12% Similarity=0.106 Sum_probs=96.5
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCC----ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQ----SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLR 284 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t 284 (468)
+...+|.|++.+....+++.+++... ....+..... ....|+.+| .. .-+||+.... ..+++++...
T Consensus 119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~----~~p~glavD--~~--~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----QAPDGLAVD--WI--HSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC----SCEEEEEEE--TT--TTEEEEEETTTTEEEEECTTT
T ss_pred eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC----CCcccEEEE--ec--CCceEEEECCCCeEEEEeCCC
Confidence 44467888888877778888888652 1222221111 123455566 21 2467766543 3488888765
Q ss_pred CCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCe
Q 012227 285 NSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGR 358 (468)
Q Consensus 285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~ 358 (468)
..-+.+.. .... ...++.+ +|.|||.... ...|..+|+....-..+ ..... ..-..|+.- +++
T Consensus 191 ~~~~~l~~--~~~~-------~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-~~~~l-~~P~glavd~~~~~ 259 (400)
T 3p5b_L 191 VKRKTLFR--ENGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSGR 259 (400)
T ss_dssp CSEEEEEE--CSSC-------CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-ECSSC-SCEEEEEEETTTTE
T ss_pred CceEEEEe--CCCC-------CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-EECCC-CceEEEEEEeCCCE
Confidence 43322210 0100 1223444 6899998753 36799999976543333 11111 111234444 789
Q ss_pred EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 359 IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 359 L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
||++... .. .|++++.....-..+...+..+. .+......++.||+.. .....|..+|..++
T Consensus 260 lY~aD~~----~~--~I~~~d~dG~~~~~~~~~~~~l~-------~P~gl~v~~~~lywtd--~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 260 LYWVDSK----LH--SISSIDVNGGNRKTILEDEKRLA-------HPFSLAVFEDKVFWTD--IINEAIFSANRLTG 321 (400)
T ss_dssp EEEEETT----TT--EEEEEETTSCCCEEEEECSSTTS-------SEEEEEEETTEEEEEE--SSSCSEEEEESSSC
T ss_pred EEEEECC----CC--EEEEEeCCCCccEEEEeCCCCCC-------CCEEEEEeCCEEEEec--CCCCeEEEEEcCCC
Confidence 9987532 22 56666654322222222111111 1222223567887643 33567888996554
No 48
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.41 E-value=2.8 Score=37.85 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=100.6
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~ 288 (468)
+...+|.|++.+....++.++++.++....+-.... ....++.+|+ . ..++++.... ..+.+++.....-+
T Consensus 43 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~----~~p~~ia~d~--~--~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL----GSPEGIALDH--L--GRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC----CCEEEEEEET--T--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC----CCccEEEEEe--c--CCeEEEEECCCCEEEEEEcCCCCEE
Confidence 444578888888777789999998765443322111 1123455552 1 2356655433 35888887543211
Q ss_pred CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIML 361 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~l 361 (468)
.+. +.... ....+.+ +|.+||.... ...|..+++....-..+ ..... ..-..++.. ++.||+
T Consensus 115 ~~~--~~~~~-------~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-~~~~~-~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 115 VLF--DTGLV-------NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-AQDNL-GLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EEE--CSSCS-------SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-ECTTC-SCEEEEEEETTTTEEEE
T ss_pred EEE--ECCCC-------CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-EECCC-CCCcEEEEcCCCCEEEE
Confidence 111 00101 1223333 6899998754 45788999876544433 11111 111233433 568887
Q ss_pred EEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE-EEc
Q 012227 362 VGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW-LKV 440 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w-~~v 440 (468)
+... .. .|++++.....-..+ +. +...+......++.||+.. ...+.+.++|+++++. +.+
T Consensus 184 ~d~~----~~--~I~~~~~~g~~~~~~--~~--------~~~~P~gi~~d~~~lyva~--~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 184 VDAG----TH--RAECLNPAQPGRRKV--LE--------GLQYPFAVTSYGKNLYYTD--WKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EETT----TT--EEEEEETTEEEEEEE--EE--------CCCSEEEEEEETTEEEEEE--TTTTEEEEEETTTTEEEEEE
T ss_pred EECC----CC--EEEEEecCCCceEEE--ec--------CCCCceEEEEeCCEEEEEE--CCCCeEEEEeCCCCCceEEE
Confidence 6532 22 556666542211111 11 0011222223478888743 3356899999998764 444
Q ss_pred c
Q 012227 441 P 441 (468)
Q Consensus 441 ~ 441 (468)
+
T Consensus 246 ~ 246 (267)
T 1npe_A 246 H 246 (267)
T ss_dssp C
T ss_pred c
Confidence 3
No 49
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.41 E-value=1.4 Score=42.05 Aligned_cols=188 Identities=12% Similarity=0.108 Sum_probs=93.4
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCCCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRPGSM 293 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~~~~ 293 (468)
+.+++.......+.+||..+++....-.... .. .++.+.+ +.-.+++.+ .++.+.+||..+++-...-..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~--~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS---NP--MGAVISP----DGTKVYVANAHSNDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS---SE--EEEEECT----TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC---Cc--ceEEECC----CCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence 3455666656789999998887654322111 11 2333331 122444444 456799999887654321110
Q ss_pred CCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCC
Q 012227 294 PSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNA 369 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~ 369 (468)
+. ....+.+ +| .+|+.+.....|..||+.+++.... ++... ....++.. +|+..++.. ..
T Consensus 73 ~~----------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-~~~~~--~~~~~~~s~dg~~l~~~~---~~ 136 (391)
T 1l0q_A 73 GS----------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGK--SPLGLALSPDGKKLYVTN---NG 136 (391)
T ss_dssp SS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EECSS--SEEEEEECTTSSEEEEEE---TT
T ss_pred CC----------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-EeCCC--CcceEEECCCCCEEEEEe---CC
Confidence 00 1112223 34 4666665557899999998876543 22211 11222222 565443332 22
Q ss_pred ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
...+.+|.+. +.+.......... ....++. ++..|++.. ...+.+.+||+.+++....
T Consensus 137 ~~~v~~~d~~--~~~~~~~~~~~~~---------~~~~~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 137 DKTVSVINTV--TKAVINTVSVGRS---------PKGIAVTPDGTKVYVAN--FDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp TTEEEEEETT--TTEEEEEEECCSS---------EEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECC--CCcEEEEEecCCC---------cceEEECCCCCEEEEEe--CCCCEEEEEECCCCeEEEE
Confidence 3567777443 3333222221110 1122233 445665532 3356799999988865443
No 50
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.33 E-value=1.2 Score=41.08 Aligned_cols=187 Identities=14% Similarity=0.158 Sum_probs=87.9
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--CccC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SWTR 289 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W~~ 289 (468)
..|-+++.+.....++++|+.|++.. .++.... .....+.+ . + +.++++ .....+..||+ ++ .|+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~--~--p---dG~ilv-s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--WECNSVAA--T--K---AGEILF-SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--CCCCEEEE--C--T---TSCEEE-ECBSEEEEECT-TSCEEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEE--C--C---CCCEEE-eCCCCEEEECC-CCCEEEEE
Confidence 34444555555568999999888744 2332110 01111222 2 1 134554 45566888988 44 3754
Q ss_pred CCCCCCCcccCcccccccceEEECCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCC--CCCC-ceE-EEECCeEEEEEE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPL--HLND-HTL-AECGGRIMLVGL 364 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~--~~~~-~~l-~~~~G~L~lv~~ 364 (468)
-.. ... ........-+|.+++.... ...++.+|+..+....+.+.... .... ..+ ...+|.++++..
T Consensus 72 ~~~--~~~------~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 72 AAP--AGC------EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ECC--TTC------EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred cCC--CCc------cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 321 000 0112233347887776654 56788999866543333332211 1011 112 223677665432
Q ss_pred EeeCCccEEEEEEEecC-CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 365 LTKNAATCVCIWELQKM-TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
... .|..++.. +..|+.-. +.... .. ....+|.+++.. ....+++.+|+++++.
T Consensus 144 ----~~~--~v~~~d~~G~~~w~~~~--~~~~~--------~~-~~~~~g~~~v~~--~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 144 ----ATS--EVREIAPNGQLLNSVKL--SGTPF--------SS-AFLDNGDCLVAC--GDAHCFVQLNLESNRI 198 (276)
T ss_dssp ----TTT--EEEEECTTSCEEEEEEC--SSCCC--------EE-EECTTSCEEEEC--BTTSEEEEECTTTCCE
T ss_pred ----CCC--EEEEECCCCCEEEEEEC--CCCcc--------ce-eEcCCCCEEEEe--CCCCeEEEEeCcCCcE
Confidence 112 34444544 33555432 11100 11 222234443322 2245799999997754
No 51
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.26 E-value=0.4 Score=43.89 Aligned_cols=108 Identities=12% Similarity=-0.032 Sum_probs=67.9
Q ss_pred EECCEEEEEEcCC--CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227 311 SVDGILYFMRSDP--EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV 388 (468)
Q Consensus 311 ~~~G~lY~~~~~~--~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v 388 (468)
+.+|.+|.-++.. ..|..+|+++++-..- ++.+.......+...+++||++....+ .+|++|.. .-+.+
T Consensus 50 ~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~g~~ly~ltw~~~------~v~v~D~~--t~~~~ 120 (262)
T 3nol_A 50 YRNGYFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDWKDKIVGLTWKNG------LGFVWNIR--NLRQV 120 (262)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSS------EEEEEETT--TCCEE
T ss_pred EECCEEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEeCCEEEEEEeeCC------EEEEEECc--cCcEE
Confidence 3588888877532 3799999999876542 344444344556778999998864332 67788874 34455
Q ss_pred EeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 389 DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 389 ~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
.+++... . .+.+..+++.+|+.. ....+..+|+++.+..
T Consensus 121 ~ti~~~~----e----G~glt~dg~~L~~Sd---Gs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 121 RSFNYDG----E----GWGLTHNDQYLIMSD---GTPVLRFLDPESLTPV 159 (262)
T ss_dssp EEEECSS----C----CCCEEECSSCEEECC---SSSEEEEECTTTCSEE
T ss_pred EEEECCC----C----ceEEecCCCEEEEEC---CCCeEEEEcCCCCeEE
Confidence 5554321 1 123444567777643 2468999999986543
No 52
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.11 E-value=4.5 Score=39.11 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=100.5
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~ 288 (468)
....+|.|++.+....+++.+++.++....+...... . ..++.+| . ...+||+.... ..+++++.....-+
T Consensus 123 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~--~--p~glavd--~--~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 123 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE--S--PGGLAVD--W--VHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS--C--CCCEEEE--T--TTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC--C--ccEEEEE--e--CCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3446788998887778899999988765554322111 1 1234444 1 12356665432 34777776543211
Q ss_pred CCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLV 362 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv 362 (468)
.+. ..... ...++.+ +|.+||..... ..|..+|+....-..+ ...... .-..|+.. +|+||++
T Consensus 195 ~l~--~~~l~-------~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~~~~~-~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 195 VLL--WQSLE-------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-ADTHLF-WPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp EEE--CSSCS-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSCS-CEEEEEEEGGGTEEEEE
T ss_pred Eee--cCCCC-------CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-EECCCC-CeeeEEEeCCCCEEEEE
Confidence 111 00111 1223333 68999988665 7899999986544433 111111 11234443 7899987
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC-cEEEc
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR-EWLKV 440 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~-~w~~v 440 (468)
... .. .|++++.....=..+..-. ...+......++.||+.. .....|..+|..++ ..+.+
T Consensus 264 D~~----~~--~I~~~d~dG~~~~~~~~~~---------~~~P~giav~~~~ly~td--~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 264 DAK----HH--VIERANLDGSHRKAVISQG---------LPHPFAITVFEDSLYWTD--WHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp ETT----TT--EEEEECTTSCSCEEEECSS---------CSSEEEEEEETTEEEEEE--TTTTEEEEEETTTCCSCEEE
T ss_pred ECC----CC--EEEEEeCCCCeeEEEEECC---------CCCceEEEEECCEEEEee--CCCCeEEEEECCCCcceEEE
Confidence 532 22 5666665422111221111 001222222567887643 34578999995443 34444
No 53
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.04 E-value=3.3 Score=37.40 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=102.4
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCcc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~ 288 (468)
....+|-+++.......+.++|+. ++...++.... . ....++..++ +.++++... ...+.+||.. +.+.
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~-~--~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP-D--AKVMCLIVSS-----LGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-T--CCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEE
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC-C--CcceeEEECC-----CCCEEEEecCCCeEEEECCC-CCeE
Confidence 334567777777656689999998 77765543211 1 1223444442 124554443 3458888877 6654
Q ss_pred CCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLL 365 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~ 365 (468)
.... +.... ....+.+ +|.+|+.......|..||+. ++...+..+.... .-..++. -+|+|++....
T Consensus 96 ~~~~-~~~~~-------~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 96 EYPL-PQPDS-------GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS-YPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp EEEC-SSTTC-------CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC-CEEEEEECTTSSEEEEETT
T ss_pred EecC-CCCCC-------CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC-CceeEEECCCCCEEEEecC
Confidence 3311 11100 1123333 68888877656689999998 6666554432111 1122333 36888775421
Q ss_pred eeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 366 TKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 366 ~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
.. .|++++. +++...+ .++.... ...-.++..+|.||+... ..+.+..||+ ++++..+
T Consensus 166 ----~~--~i~~~~~-~g~~~~~-~~~~~~~------~~~~i~~d~~g~l~v~~~--~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 166 ----NN--SIGRITN-TGKLEEY-PLPTNAA------APVGITSGNDGALWFVEI--MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp ----TT--EEEEECT-TCCEEEE-ECSSTTC------CEEEEEECTTSSEEEEET--TTTEEEEECT-TCCEEEE
T ss_pred ----CC--eEEEECC-CCcEEEe-eCCCCCC------CcceEEECCCCCEEEEcc--CCCEEEEEcC-CCcEEEE
Confidence 12 4667776 4555543 2221110 011223344567776432 2457999998 5666554
No 54
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=93.93 E-value=1.1 Score=41.10 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=36.6
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
|.+++|.+.. .+.+.|||..|++...+-....+.... ..+.+.+ .+ -.++..+.++.+.+|+..+++
T Consensus 34 S~~~~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V--~~v~~~~---~~-~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 34 SSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYI--SSVAWIK---EG-NYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp CTTSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCE--EEEEECT---TS-SEEEEEETTSEEEEEETTTTE
T ss_pred CCCCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeE--EEEEECC---CC-CEEEEEECCCcEEEeecCCce
Confidence 4566665543 347999999999876543221111112 2333331 11 233333445669999988764
No 55
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.93 E-value=2.8 Score=39.92 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=60.2
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceE--e-cCCCCc---CCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFK--E-LPARSV---KVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~--~-LP~~~~---~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
.+|.|++.... ..++.+|+.|++.. . ++.... ............+ +-+|++...++.+..+|..+++
T Consensus 52 ~~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 52 ADNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS------GGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp ETTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE------TTEEEEEETTSEEEEEETTTCC
T ss_pred ECCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccCceEe------CCEEEEEcCCCEEEEEECCCCC
Confidence 46777666532 47888999888743 2 221100 0001111222222 2366665555679999987664
Q ss_pred --ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe--EEE
Q 012227 287 --WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV--WKQ 338 (468)
Q Consensus 287 --W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~--w~~ 338 (468)
|+.-.. .. ....++..+|.+|+... ...|.+||..+++ |..
T Consensus 125 ~~W~~~~~--~~--------~~~~p~~~~~~v~v~~~-~g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 125 VAWQTKVA--GE--------ALSRPVVSDGLVLIHTS-NGQLQALNEADGAVKWTV 169 (376)
T ss_dssp EEEEEECS--SC--------CCSCCEEETTEEEEECT-TSEEEEEETTTCCEEEEE
T ss_pred EEEEEeCC--Cc--------eEcCCEEECCEEEEEcC-CCeEEEEECCCCcEEEEE
Confidence 764211 11 12345667888887653 4589999997764 765
No 56
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.74 E-value=4 Score=37.25 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=93.8
Q ss_pred eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEE----Ee-------------
Q 012227 211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWV----GC------------- 273 (468)
Q Consensus 211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v----~~------------- 273 (468)
-+.+|.+++.......+.++|+.+++...+..............+.++ + +.++++. +.
T Consensus 76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~---~G~l~vtd~~~g~~~~~~~~~~~~~~ 150 (296)
T 3e5z_A 76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA--P---DGSLWFSDPTYGIDKPEEGYGGEMEL 150 (296)
T ss_dssp ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC--T---TSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC--C---CCCEEEECCccccccccccccccccC
Confidence 345777777766556899999999988766432110000001123334 1 1234443 11
Q ss_pred -cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECC-CCeE-EEee-cCCCCCC
Q 012227 274 -DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMV-TGVW-KQFI-IPTPLHL 347 (468)
Q Consensus 274 -~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~-~~~w-~~i~-~P~p~~~ 347 (468)
...+..|+.. ++-+.+.. ... ...++.+ +|.+++.......|..||+. +++. .... .... ..
T Consensus 151 ~~~~l~~~~~~-g~~~~~~~---~~~-------~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~ 218 (296)
T 3e5z_A 151 PGRWVFRLAPD-GTLSAPIR---DRV-------KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PG 218 (296)
T ss_dssp SSCEEEEECTT-SCEEEEEC---CCS-------SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SS
T ss_pred CCcEEEEECCC-CCEEEeec---CCC-------CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CC
Confidence 1235556554 33322111 100 1123444 57666655556789999986 5555 2111 1111 11
Q ss_pred CCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE-e-cCCEEEEEeeeCCC
Q 012227 348 NDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL-G-NKGLLMLSLRSRQM 424 (468)
Q Consensus 348 ~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~-~~~~I~~~~~~~~~ 424 (468)
.-..++. -+|+|++.. . . .|++++.. ++-.....++.. . .-.++ + +++.||+...
T Consensus 219 ~p~~i~~d~~G~l~v~~--~----~--~v~~~~~~-g~~~~~~~~~~~-~--------~~~~f~~~d~~~L~v~t~---- 276 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--G----D--GVHVLTPD-GDELGRVLTPQT-T--------SNLCFGGPEGRTLYMTVS---- 276 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--T----T--EEEEECTT-SCEEEEEECSSC-C--------CEEEEESTTSCEEEEEET----
T ss_pred CCCeEEECCCCCEEEEc--C----C--eEEEECCC-CCEEEEEECCCC-c--------eeEEEECCCCCEEEEEcC----
Confidence 1123443 378988765 2 2 34455664 333333233322 1 11233 2 3457877432
Q ss_pred CeEEEEECCCCcEEE
Q 012227 425 NRLVTYNVMSREWLK 439 (468)
Q Consensus 425 ~~l~~YD~~t~~w~~ 439 (468)
..++.||+++++.++
T Consensus 277 ~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 277 TEFWSIETNVRGLEH 291 (296)
T ss_dssp TEEEEEECSCCBCCC
T ss_pred CeEEEEEcccccccc
Confidence 479999999998764
No 57
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=93.74 E-value=3.8 Score=37.00 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=108.6
Q ss_pred ceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCC
Q 012227 184 AMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTS 263 (468)
Q Consensus 184 ~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ 263 (468)
..||+. +......++........+ ....+|.+++.......++++|+. ++...+..+.. .....++..++
T Consensus 39 ~~~d~~-~~~~~~~~~~~~~~~~~i-~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~~~~i~~~~---- 108 (299)
T 2z2n_A 39 SCINLD-GKITEYPLPTPDAKVMCL-TISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNP---DSAPYGITEGP---- 108 (299)
T ss_dssp EEECTT-CCEEEEECSSTTCCEEEE-EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECT----
T ss_pred EEEcCC-CCeEEecCCcccCceeeE-EECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCc---CCCceeeEECC----
Confidence 456666 444332222211222223 333577777776655679999986 55544432111 11224455552
Q ss_pred CCeEEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEee
Q 012227 264 SGYKILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFI 340 (468)
Q Consensus 264 ~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~ 340 (468)
+.++++... ...+.+|+. ++....... +... . ....+.+ +|.+|+.......|..||+ ++++..+.
T Consensus 109 -~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~~~~------~-~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~ 177 (299)
T 2z2n_A 109 -NGDIWFTEMNGNRIGRITD-DGKIREYEL-PNKG------S-YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFK 177 (299)
T ss_dssp -TSCEEEEETTTTEEEEECT-TCCEEEEEC-SSTT------C-CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred -CCCEEEEecCCceEEEECC-CCCEEEecC-CCCC------C-CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEee
Confidence 124554432 345888887 555432211 1000 0 1123333 5788887765568999999 77776654
Q ss_pred cCCCCCCCCc-eEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEE
Q 012227 341 IPTPLHLNDH-TLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLS 418 (468)
Q Consensus 341 ~P~p~~~~~~-~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~ 418 (468)
.+.. .... .++.. +|+|++.... .. .|++++. ++....+ .++... ....-.++..+|.||+.
T Consensus 178 ~~~~--~~~~~~i~~~~~g~l~v~~~~----~~--~i~~~~~-~g~~~~~-~~~~~~------~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 178 IPTP--ASGPVGITKGNDDALWFVEII----GN--KIGRITT-SGEITEF-KIPTPN------ARPHAITAGAGIDLWFT 241 (299)
T ss_dssp CSST--TCCEEEEEECTTSSEEEEETT----TT--EEEEECT-TCCEEEE-ECSSTT------CCEEEEEECSTTCEEEE
T ss_pred CCCC--CCcceeEEECCCCCEEEEccC----Cc--eEEEECC-CCcEEEE-ECCCCC------CCceeEEECCCCCEEEe
Confidence 4322 1222 23332 6888775421 12 4555676 5555443 222110 00111233345677764
Q ss_pred eeeCCCCeEEEEECCCCcEEEc
Q 012227 419 LRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 419 ~~~~~~~~l~~YD~~t~~w~~v 440 (468)
. ...+.+..||+ +++.+.+
T Consensus 242 ~--~~~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 242 E--WGANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp E--TTTTEEEEEET-TTEEEEE
T ss_pred c--cCCceEEEECC-CCceEEE
Confidence 3 23468999998 4565554
No 58
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.71 E-value=3.5 Score=44.16 Aligned_cols=190 Identities=11% Similarity=0.104 Sum_probs=95.9
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCC----ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQ----SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLR 284 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t 284 (468)
+...+|.|++.+....+++.+++-.. ....+-..... ...|+.+| .. .-+||+.... ..+++++...
T Consensus 431 ~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~----~P~GLAvD--~~--~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 431 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ----APDGLAVD--WI--HSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS----CCCEEEEE--TT--TTEEEEEETTTTEEEEEETTS
T ss_pred ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC----Ccceeeee--ec--CCcEEEEecCCCeEEEEeCCC
Confidence 34457788888776667877776542 12222111111 12345555 21 2367766543 3488888764
Q ss_pred CCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CC
Q 012227 285 NSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GG 357 (468)
Q Consensus 285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G 357 (468)
..-+.+.. .... ...++++ +|.|||..... ..|..+++....-..+ +.. .... ..|+.- +|
T Consensus 503 ~~~~~l~~--~~l~-------~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l-v~~--~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 503 VKRKTLFR--ENGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTE--NIQWPNGITLDLLSG 570 (791)
T ss_dssp SSEEEEEE--CTTC-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-ECS--SCSCEEEEEEETTTT
T ss_pred CeEEEEEe--CCCC-------CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE-EeC--CCCCceEEEEecCCC
Confidence 43322210 0000 1234555 58999988543 6899999987655444 221 1112 234443 78
Q ss_pred eEEEEEEEeeCCccEEEEEEEecCC-CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 358 RIMLVGLLTKNAATCVCIWELQKMT-LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 358 ~L~lv~~~~~~~~~~i~Vw~ld~~~-~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
+||++... .. .|++++... ...+.+.. ...+. .++.....++.||+.- .....|..+|..++
T Consensus 571 ~LYwaD~~----~~--~I~~~d~dG~~~~~v~~~-~~~l~-------~P~glav~~~~lYwtD--~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 571 RLYWVDSK----LH--SISSIDVNGGNRKTILED-EKRLA-------HPFSLAVFEDKVFWTD--IINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEETT----TT--EEEEEETTSCSCEEEEEC-TTTTS-------SEEEEEEETTEEEEEE--TTTTEEEEEETTTC
T ss_pred eEEEEeCC----CC--cEEEEecCCCceEEEecC-CCccC-------CCCEEEEeCCEEEEEE--CCCCEEEEEeCCCC
Confidence 99987532 22 566666542 23333221 11111 1222323467887642 34567888887655
No 59
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=93.62 E-value=0.33 Score=44.52 Aligned_cols=107 Identities=9% Similarity=-0.101 Sum_probs=68.1
Q ss_pred EECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227 311 SVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390 (468)
Q Consensus 311 ~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~ 390 (468)
+.++.||.-++....|..+|+++++-..-.+| .......+...+++||++....+ .+|++|.. .-+.+.+
T Consensus 62 ~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~--~~~FgeGit~~g~~Ly~ltw~~~------~v~V~D~~--Tl~~~~t 131 (268)
T 3nok_A 62 FHQGHFFESTGHQGTLRQLSLESAQPVWMERL--GNIFAEGLASDGERLYQLTWTEG------LLFTWSGM--PPQRERT 131 (268)
T ss_dssp EETTEEEEEETTTTEEEECCSSCSSCSEEEEC--TTCCEEEEEECSSCEEEEESSSC------EEEEEETT--TTEEEEE
T ss_pred EECCEEEEEcCCCCEEEEEECCCCcEEeEECC--CCcceeEEEEeCCEEEEEEccCC------EEEEEECC--cCcEEEE
Confidence 45788999887666799999998765432133 22233446667899998754322 67888874 4555555
Q ss_pred eChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 391 MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 391 mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
++..- . .+.+..+++.+|+.. ..+.+..+|+++.+..
T Consensus 132 i~~~~----e----GwGLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 132 TRYSG----E----GWGLCYWNGKLVRSD---GGTMLTFHEPDGFALV 168 (268)
T ss_dssp EECSS----C----CCCEEEETTEEEEEC---SSSEEEEECTTTCCEE
T ss_pred EeCCC----c----eeEEecCCCEEEEEC---CCCEEEEEcCCCCeEE
Confidence 54321 0 123444577887753 2578999999986544
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.55 E-value=2.5 Score=39.65 Aligned_cols=205 Identities=11% Similarity=0.073 Sum_probs=96.8
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP 294 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p 294 (468)
|-+++.......+.+||..++++..+-......... ..+.+. +......++..+.++.+.+||..++.-.....+.
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV--NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce--EEEEeC--CCCCCCEEEEecCCCcEEEEecCCCCceeeEEec
Confidence 444444444567999999988755443322222222 233333 2111234554555667999998866321110000
Q ss_pred CCcccCcccccccceEEE---------------CCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEE--
Q 012227 295 SNIKLPVSLNFRSQAVSV---------------DGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAEC-- 355 (468)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~---------------~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~-- 355 (468)
... ..-..+.+ +|.+.+.+.....|..||+.+. .+..+. ....+.....-+.+
T Consensus 145 ~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 145 AHA-------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLEGHSDWVRDVAWSP 216 (379)
T ss_dssp CCT-------TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-EECCCSSCEEEEEECC
T ss_pred CCC-------CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-EEecccCcEeEEEECC
Confidence 000 00011111 4666666666667888998654 343331 11112222222232
Q ss_pred C---CeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEE
Q 012227 356 G---GRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYN 431 (468)
Q Consensus 356 ~---G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD 431 (468)
+ |++++++.. ...+.||.++.....+......... ... ...-.++. ++..|+.. + ..+.+.+||
T Consensus 217 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~----~~~-~v~~~~~s~~g~~l~~~--~-~dg~i~iw~ 284 (379)
T 3jrp_A 217 TVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEK----FPD-VLWRASWSLSGNVLALS--G-GDNKVTLWK 284 (379)
T ss_dssp CCSSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSC----CSS-CEEEEEECSSSCCEEEE--E-SSSSEEEEE
T ss_pred CCCCCCeEEEEeC----CCEEEEEeCCCCCccceeeeecccc----CCC-cEEEEEEcCCCCEEEEe--c-CCCcEEEEe
Confidence 3 666665532 2478999887654444332111100 001 01112232 34444332 2 246788899
Q ss_pred CC-CCcEEEccCC
Q 012227 432 VM-SREWLKVPGC 443 (468)
Q Consensus 432 ~~-t~~w~~v~~~ 443 (468)
+. .++|+.+...
T Consensus 285 ~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 285 ENLEGKWEPAGEV 297 (379)
T ss_dssp EEETTEEEEEEEE
T ss_pred CCCCCccccccce
Confidence 87 5677776543
No 61
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.40 E-value=4.2 Score=37.49 Aligned_cols=192 Identities=10% Similarity=0.033 Sum_probs=94.1
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-Cc-EEEEeCCCCCc-cCC--CCCCCCcccC
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GE-YEIYDSLRNSW-TRP--GSMPSNIKLP 300 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~-v~vy~s~t~~W-~~~--~~~p~~~~~~ 300 (468)
.+.++|+.+++....-+... .. .++.+++ .+.+ +++.... .. +.+|+...+.- ... ..++..
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~---~~--~~~~~sp---dg~~-l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~---- 175 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPY---DA--VGIAISP---NGNG-LILIDRSSANTVRRFKIDADGVLFDTGQEFISGG---- 175 (331)
T ss_dssp EEEEEETTTTEEEEEEECCT---TE--EEEEECT---TSSC-EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----
T ss_pred cEEEEECCCCCeEEEEECCC---Cc--cceEECC---CCCE-EEEEecCCCceEEEEEECCCCcEeecCCccccCC----
Confidence 79999999887654322111 11 2344442 1223 5544443 56 88888654321 000 000000
Q ss_pred cccccccceEEE--CCE-EEEEEcCCCeEEEEECCCCeE----EEeecCCCCCCCCceEEEE-CCe-EEEEEEEeeCCcc
Q 012227 301 VSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVTGVW----KQFIIPTPLHLNDHTLAEC-GGR-IMLVGLLTKNAAT 371 (468)
Q Consensus 301 ~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~~~w----~~i~~P~p~~~~~~~l~~~-~G~-L~lv~~~~~~~~~ 371 (468)
.....+.+ +|. +|+.......|..||+.+.+. ..+ +... ....++.. +|+ |++... ...
T Consensus 176 ----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~--~~~~~~~spdg~~l~v~~~----~~~ 243 (331)
T 3u4y_A 176 ----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV--GTNN--LPGTIVVSRDGSTVYVLTE----STV 243 (331)
T ss_dssp ----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSS--CCCCEEECTTSSEEEEECS----SEE
T ss_pred ----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec--cCCC--CCceEEECCCCCEEEEEEc----CCC
Confidence 01112223 565 777776667899999987664 332 2221 11223332 677 444322 123
Q ss_pred EEEEEEEecCCCCeEEEEeeChhhh--hcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCCccC
Q 012227 372 CVCIWELQKMTLLWKEVDRMPNIWC--LDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVP 446 (468)
Q Consensus 372 ~i~Vw~ld~~~~~W~~v~~mp~~~~--~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~~~~ 446 (468)
.+.+ ++..+++.+.+..++.... .........+....++..+|+.. ...+.+.+||+.++....+......
T Consensus 244 ~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~ 316 (331)
T 3u4y_A 244 DVFN--FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA--NISRELKVFTISGKVVGYVAGIEAN 316 (331)
T ss_dssp EEEE--EETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE--TTTTEEEEEETTSCEEEECTTCCCB
T ss_pred EEEE--EECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec--CCCCcEEEEEecCCcccceeccccc
Confidence 3444 4655566655555443210 00000000122223455676543 3456899999999998888765543
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.38 E-value=1.9 Score=41.65 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=85.8
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLN 304 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~ 304 (468)
+.+.+||..+++...+-... .... ...+.+. + +.-.++..+.++.+.+||..++.-... +... .
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~-~~~~--v~~v~~s--~--~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~-------~ 176 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD-ESTY--VASVKWS--H--DGSFLSVGLGNGLVDIYDVESQTKLRT--MAGH-------Q 176 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC-TTCC--EEEEEEC--T--TSSEEEEEETTSCEEEEETTTCCEEEE--ECCC-------S
T ss_pred CeEEEeeCCCCcEeEeeecC-CCCC--EEEEEEC--C--CCCEEEEECCCCeEEEEECcCCeEEEE--ecCC-------C
Confidence 47999999998876544321 1111 2233343 1 112333334466799999877653211 1100 0
Q ss_pred cccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCC
Q 012227 305 FRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMT 382 (468)
Q Consensus 305 ~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~ 382 (468)
..-..+..++.+.+.+.....|..+|+.+..-....... +.....-+.+ +|++++++.. ...+.||.+....
T Consensus 177 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~~ 250 (401)
T 4aez_A 177 ARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRSDGLQLASGGN----DNVVQIWDARSSI 250 (401)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTCSS
T ss_pred CceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC--CCCCeeEEEEcCCCCEEEEEeC----CCeEEEccCCCCC
Confidence 012234446666666666678999999843221111111 1111222222 6666665542 2467888655321
Q ss_pred CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 383 LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 383 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
.+..+... ......+.....++.+++...+...+.+.+||+.+++..
T Consensus 251 ----~~~~~~~~-----~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 251 ----PKFTKTNH-----NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp ----EEEEECCC-----SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred ----ccEEecCC-----cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 11112100 000001212223444444332224567888888777543
No 63
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.21 E-value=5.9 Score=37.60 Aligned_cols=186 Identities=18% Similarity=0.221 Sum_probs=99.1
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceE--e-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFK--E-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~--~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
....+|.|++.... ..++.+|+.|++.. . ++.. . .... ...+ -+|++...++.+..||..+++
T Consensus 99 ~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~-~--~~~p---~~~~-------~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 99 VTVSGGHVYIGSEK-AQVYALNTSDGTVAWQTKVAGE-A--LSRP---VVSD-------GLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEETTEEEEEETT-SEEEEEETTTCCEEEEEECSSC-C--CSCC---EEET-------TEEEEECTTSEEEEEETTTCC
T ss_pred ceEeCCEEEEEcCC-CEEEEEECCCCCEEEEEeCCCc-e--EcCC---EEEC-------CEEEEEcCCCeEEEEECCCCc
Confidence 45567888776543 47999999998743 2 2211 1 0101 1112 255544445568899987665
Q ss_pred --ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCC--------CCceEEE
Q 012227 287 --WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHL--------NDHTLAE 354 (468)
Q Consensus 287 --W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~--------~~~~l~~ 354 (468)
|+.....+.. ........+..+|.+|+-. ....+.+||+.++ .|..- .+.+... .....+.
T Consensus 165 ~~W~~~~~~~~~-----~~~~~~~~~~~~~~v~~g~-~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 165 VKWTVNLDMPSL-----SLRGESAPTTAFGAAVVGG-DNGRVSAVLMEQGQMIWQQR-ISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp EEEEEECCC----------CCCCCCEEETTEEEECC-TTTEEEEEETTTCCEEEEEE-CCC-----------CCCCCCEE
T ss_pred EEEEEeCCCCce-----eecCCCCcEEECCEEEEEc-CCCEEEEEECCCCcEEEEEe-cccCCCCcccccccccCCCcEE
Confidence 8753221110 0011234556788887744 4468999999765 45542 3222111 1123345
Q ss_pred ECCeEEEEEEEeeCCccEEEEEEEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 355 CGGRIMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 355 ~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
.+|.||+... . . .++.++.. +..|..- .+. ....+..++.||+... .+.+++||+
T Consensus 238 ~~~~v~~~~~-~----g--~l~~~d~~tG~~~w~~~--~~~-----------~~~~~~~~~~l~~~~~---~g~l~~~d~ 294 (376)
T 3q7m_A 238 VNGVVFALAY-N----G--NLTALDLRSGQIMWKRE--LGS-----------VNDFIVDGNRIYLVDQ---NDRVMALTI 294 (376)
T ss_dssp ETTEEEEECT-T----S--CEEEEETTTCCEEEEEC--CCC-----------EEEEEEETTEEEEEET---TCCEEEEET
T ss_pred ECCEEEEEec-C----c--EEEEEECCCCcEEeecc--CCC-----------CCCceEECCEEEEEcC---CCeEEEEEC
Confidence 6888887541 1 1 35555654 3356542 110 0112234788887532 457999999
Q ss_pred CCCcEEE
Q 012227 433 MSREWLK 439 (468)
Q Consensus 433 ~t~~w~~ 439 (468)
++++..+
T Consensus 295 ~tG~~~w 301 (376)
T 3q7m_A 295 DGGVTLW 301 (376)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 9886443
No 64
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=92.98 E-value=6.4 Score=37.38 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=99.2
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~ 288 (468)
....+|.|++.+....+++.+++.++....+...... . ..++.+| . ...+||+.... ..+++++.....-+
T Consensus 80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~--~--p~glavd--~--~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE--S--PGGLAVD--W--VHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--C--CCEEEEE--T--TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC--C--ccEEEEe--c--CCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 3456888998887777899999988765544322111 1 1344455 1 12466665543 35888887643322
Q ss_pred CCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIML 361 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~l 361 (468)
.+. ..... ...++.+ +|.+||..... ..|..+|+....-..+ .. ..... ..++.. +|+||+
T Consensus 152 ~l~--~~~l~-------~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~--~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 152 VLL--WQSLE-------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-AD--THLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp EEE--CTTCS-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-CC--SSCSCEEEEEEETTTTEEEE
T ss_pred EEE--eCCCC-------CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-EE--CCCCCcceEEEeCCCCEEEE
Confidence 111 01111 1123333 68999998765 7899999986544433 11 11111 234443 788998
Q ss_pred EEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 362 VGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
+... .. .|++++.....=..+.... ...+......++.||+.. .....|..+|..++
T Consensus 220 aD~~----~~--~I~~~~~dG~~~~~~~~~~---------~~~P~giav~~~~ly~td--~~~~~V~~~~~~~G 276 (349)
T 3v64_C 220 VDAK----HH--VIERANLDGSHRKAVISQG---------LPHPFAITVFEDSLYWTD--WHTKSINSANKFTG 276 (349)
T ss_dssp EETT----TT--EEEEEETTSCSCEEEECSS---------CSSEEEEEEETTEEEEEE--TTTTEEEEEETTTC
T ss_pred EECC----CC--EEEEEeCCCCceEEEEeCC---------CCCceEEEEECCEEEEec--CCCCeEEEEEccCC
Confidence 7532 23 4555564322112221111 001222222467887743 34568889995444
No 65
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=92.88 E-value=4.9 Score=35.78 Aligned_cols=185 Identities=12% Similarity=0.152 Sum_probs=94.7
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~ 291 (468)
.+|-+++.+. ...++++|+.++....++..... ...++.++ +. .++++... .+.+.+|+.++.......
T Consensus 76 ~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~----~p~~i~~~--~~---g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 76 GAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLN----YPEGLAVD--TQ---GAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp TTCCEEEEET-TTEEEEECTTCSCCEECCCCSCS----SEEEEEEC--TT---CCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcC----CCcceEEC--CC---CCEEEEECCCCEEEEEECCCceeEeec
Confidence 3566777665 56899999988876666532211 12445555 21 24555443 345888876655433221
Q ss_pred CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEEEEEee
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv~~~~~ 367 (468)
. .... ...++.+ +|.+|+.......|..||+.+...... ... .... ..++.. +|.||+....
T Consensus 146 ~--~~~~-------~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~-~~~~p~~i~~d~~g~l~v~~~~-- 211 (270)
T 1rwi_B 146 F--TGLN-------DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFT-DITAPWGIAVDEAGTVYVTEHN-- 211 (270)
T ss_dssp C--CSCC-------SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CCS-SCCSEEEEEECTTCCEEEEETT--
T ss_pred c--ccCC-------CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--ccc-CCCCceEEEECCCCCEEEEECC--
Confidence 1 0100 1123333 588888876556899999988765432 111 1112 233332 5788876421
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceE-EEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVR-MTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~-~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
.. .|++++.....-.. .+.. +...+ -.++..+|.||+... ..+.|.+|++...+
T Consensus 212 --~~--~v~~~~~~~~~~~~---~~~~------~~~~p~~i~~~~~g~l~v~~~--~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 212 --TN--QVVKLLAGSTTSTV---LPFT------GLNTPLAVAVDSDRTVYVADR--GNDRVVKLTSLEHH 266 (270)
T ss_dssp --TS--CEEEECTTCSCCEE---CCCC------SCSCEEEEEECTTCCEEEEEG--GGTEEEEECCCGGG
T ss_pred --CC--cEEEEcCCCCccee---eccC------CCCCceeEEECCCCCEEEEEC--CCCEEEEEcCCCcc
Confidence 12 34445554322111 1100 00111 223344566776432 35688999887654
No 66
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=92.79 E-value=1.2 Score=40.89 Aligned_cols=105 Identities=9% Similarity=-0.017 Sum_probs=65.4
Q ss_pred CEEEEEEc--CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227 314 GILYFMRS--DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 314 G~lY~~~~--~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
|.+|.-.+ ....|..+|+.+++-..- ++.+.......++..+++||++....+ .|+++|.. ..+.+.++
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~l~~~~fgeGi~~~g~~lyv~t~~~~------~v~viD~~--t~~v~~~i 102 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENI-HKMDDSYFGEGLTLLNEKLYQVVWLKN------IGFIYDRR--TLSNIKNF 102 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEETTCS------EEEEEETT--TTEEEEEE
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEE-EecCCCcceEEEEEeCCEEEEEEecCC------EEEEEECC--CCcEEEEE
Confidence 78898764 246899999998875542 344333333456667889998764222 57777864 45666666
Q ss_pred ChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
+.. .. . .+....+++.+|++. ..+.+.+.|+++.+.
T Consensus 103 ~~g-~~--~----g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 103 THQ-MK--D----GWGLATDGKILYGSD---GTSILYEIDPHTFKL 138 (266)
T ss_dssp ECC-SS--S----CCEEEECSSSEEEEC---SSSEEEEECTTTCCE
T ss_pred ECC-CC--C----eEEEEECCCEEEEEC---CCCeEEEEECCCCcE
Confidence 533 11 1 122333567787653 257899999988653
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.59 E-value=8 Score=37.55 Aligned_cols=133 Identities=12% Similarity=0.188 Sum_probs=67.5
Q ss_pred CCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 223 GHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 223 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
....+.+||..+++... +.. .... ...+.++ ...++..+.++.+.+||..++.-.. .+...
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~---~~~~--v~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~----- 318 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQG---HTNR--VYSLQFD------GIHVVSGSLDTSIRVWDVETGNCIH--TLTGH----- 318 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECC---CSSC--EEEEEEC------SSEEEEEETTSCEEEEETTTCCEEE--EECCC-----
T ss_pred CCCEEEEEECCCCcEeEEecC---CCCc--eEEEEEC------CCEEEEEeCCCeEEEEECCCCCEEE--EEcCC-----
Confidence 34567888877765432 221 1111 1223333 1244444556679999987754211 11100
Q ss_pred ccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 302 SLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 302 ~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
......+..+|...+.+.....|..||+.+.+-... +..+. +.....-+..++++.+++.. ...+.||.+..
T Consensus 319 --~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~----dg~v~iwd~~~ 391 (445)
T 2ovr_B 319 --QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT-LQGPNKHQSAVTCLQFNKNFVITSSD----DGTVKLWDLKT 391 (445)
T ss_dssp --CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-ECSTTSCSSCEEEEEECSSEEEEEET----TSEEEEEETTT
T ss_pred --cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEE-EccCCCCCCCEEEEEECCCEEEEEeC----CCeEEEEECCC
Confidence 001123344565555565667899999987654332 22211 22223334557777665542 25789996543
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=92.10 E-value=4.4 Score=37.90 Aligned_cols=149 Identities=9% Similarity=0.053 Sum_probs=68.9
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM 293 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~ 293 (468)
+|-+++.......+.+||..++++..+-......... ..+.+. + +.-.++..+.++.+.+||..++.+......
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v--~~~~~~--~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 92 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV--TGVDWA--P--DSNRIVTCGTDRNAYVWTLKGRTWKPTLVI 92 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCE--EEEEEE--T--TTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcc--cEEEEe--C--CCCEEEEEcCCCeEEEEECCCCeeeeeEEe
Confidence 4433444434557889998888643332221111122 223333 1 112344444456799999988776433111
Q ss_pred CCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCe-EEEe-ecCCCCCCCCceEEEE-CCeEEEEEEEeeC
Q 012227 294 PSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGV-WKQF-IIPTPLHLNDHTLAEC-GGRIMLVGLLTKN 368 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~-w~~i-~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~ 368 (468)
.... ..-..+.+ +|...+.+.....|..||+.+.. +... ....+....-..+... +|++++++..
T Consensus 93 ~~~~-------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 162 (372)
T 1k8k_C 93 LRIN-------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--- 162 (372)
T ss_dssp CCCS-------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET---
T ss_pred ecCC-------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC---
Confidence 1110 01112222 45555555555678888877653 2221 1111111111122222 5666555432
Q ss_pred CccEEEEEEEe
Q 012227 369 AATCVCIWELQ 379 (468)
Q Consensus 369 ~~~~i~Vw~ld 379 (468)
...+.+|.+.
T Consensus 163 -dg~i~~~d~~ 172 (372)
T 1k8k_C 163 -DFKCRIFSAY 172 (372)
T ss_dssp -TSCEEEEECC
T ss_pred -CCCEEEEEcc
Confidence 2467888653
No 69
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.04 E-value=6.3 Score=35.06 Aligned_cols=187 Identities=10% Similarity=-0.004 Sum_probs=92.4
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCC-CCccCCCCCCCCcccCcc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLR-NSWTRPGSMPSNIKLPVS 302 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t-~~W~~~~~~p~~~~~~~~ 302 (468)
...+++||+.+++...+..... .. .++.+.+ . .+.++++.++.+.+||..+ +....+.......
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~---~v--~~~~~sp---d--g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----- 85 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE---LF--EAPNWSP---D--GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI----- 85 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS---CC--EEEEECT---T--SSEEEEEETTEEEEEESSSCCSCEECCCTTCCC-----
T ss_pred ceeEEEEeCCCCceeeeccCCc---ce--EeeEECC---C--CCEEEEEcCCeEEEEeCCCCCCceEeccccccc-----
Confidence 4579999999988776544211 11 2233331 1 2333445667799999988 7665443211100
Q ss_pred cccccceEEECCEEEEEEc----CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEE
Q 012227 303 LNFRSQAVSVDGILYFMRS----DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 303 ~~~~~~~v~~~G~lY~~~~----~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
........-+|...+... ....|..+|..+.....+... . ....+.-. +|+..++..... ..+.||.
T Consensus 86 -~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~~~~~~---~~~~l~~ 157 (297)
T 2ojh_A 86 -CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN--L--PSYWHGWSPDGKSFTYCGIRD---QVFDIYS 157 (297)
T ss_dssp -BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS--S--SEEEEEECTTSSEEEEEEEET---TEEEEEE
T ss_pred -cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC--C--CccceEECCCCCEEEEEECCC---CceEEEE
Confidence 000111112454333332 135688888877665443211 1 11112222 566544333222 4579999
Q ss_pred EecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 378 LQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 378 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
++..+.....+...+.. .....+. ++..|++.........++.+|+.++....+..
T Consensus 158 ~~~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 158 MDIDSGVETRLTHGEGR---------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EETTTCCEEECCCSSSC---------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred EECCCCcceEcccCCCc---------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 88765554433221110 1112233 44455543322334577888888888877754
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.93 E-value=7.3 Score=35.56 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=51.9
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-.++.......+.|||..++....+-....+.... ..+.+. +....-.++..+.++.+.+||..++.|..+..
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V--~~v~~s--~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA--HPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCe--EEEEec--CCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 34444444444456888887644322111111111122 223322 11111234444456679999999888765432
Q ss_pred CCCCcccCcccccccceEEEC----CEEEEEEcCCCeEEEEECCCC
Q 012227 293 MPSNIKLPVSLNFRSQAVSVD----GILYFMRSDPEGIVSYNMVTG 334 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~~----G~lY~~~~~~~~i~~fD~~~~ 334 (468)
..... ..-..+.+. |.+.+.+.....|..+|+.+.
T Consensus 95 ~~~h~-------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 95 HAVHS-------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp ECCCS-------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred eecCC-------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 11110 011122231 455555555567888888764
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=91.91 E-value=7.5 Score=37.23 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=73.3
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+.+|-.++.......+.+||..+++....-. .+.... ..+.+.+ ..-.++..+.++.+.+||..++.-...-
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v--~~~~~~p----~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDI--YSLDYFP----SGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCE--EEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCE--EEEEEcC----CCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 3455555555555689999998877543321 111112 2333331 1224555555677999998876532110
Q ss_pred CCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEe-ecCC---CCCCCCceEEEE--CCeEEEE
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQF-IIPT---PLHLNDHTLAEC--GGRIMLV 362 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i-~~P~---p~~~~~~~l~~~--~G~L~lv 362 (468)
.... ....+.+ +|.+.+.+.....|..||+.++..... ..+. ..+.....-+.+ +|++.+.
T Consensus 204 ~~~~----------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 204 SIED----------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp ECSS----------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred EcCC----------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 0000 0112222 566666666667899999988764332 1111 111111222222 5666554
Q ss_pred EEEeeCCccEEEEEEEec
Q 012227 363 GLLTKNAATCVCIWELQK 380 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~ 380 (468)
+.. ...+.+|.+..
T Consensus 274 ~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 274 GSL----DRSVKLWNLQN 287 (393)
T ss_dssp EET----TSEEEEEEC--
T ss_pred EeC----CCEEEEEECCC
Confidence 432 25789997764
No 72
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.90 E-value=9.2 Score=36.70 Aligned_cols=196 Identities=10% Similarity=0.046 Sum_probs=96.7
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~ 291 (468)
+|.+++.......+.+||+.+++.....+. ..........++.+.+ +.++++.+. ++.+.+||..+++-...
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~- 206 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKAT- 206 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEE-
Confidence 677777766666799999999887754332 1111111122233331 134554443 46699999876543211
Q ss_pred CCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~ 367 (468)
+..... ....+.+ +| .+|+.+.....|..||+.+.+.... ++... ....+... +|+..+++....
T Consensus 207 -~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 207 -VDLTGK-------WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIG--LPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp -EECSSS-------SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCS--EEEEEEECTTSSEEEEEEEES
T ss_pred -EcCCCC-------CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCC--CceEEEEcCCCCEEEEEECCC
Confidence 000000 1112222 33 5666665567899999998876443 32211 11122222 565555554432
Q ss_pred C----CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 368 N----AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 368 ~----~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
. ....+.+|.+.. .+- +..+.... ...-.++. .++.+|+.. ...+.+.+||+++++...
T Consensus 276 ~~~~~~dg~i~~~d~~~--~~~--~~~~~~~~-------~~~~~~~~~~g~~l~~~~--~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDK--EKL--IDTIGPPG-------NKRHIVSGNTENKIYVSD--MCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp CTTCSCCEEEEEEETTT--TEE--EEEEEEEE-------CEEEEEECSSTTEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CccccCCCeEEEEECCC--CcE--EeeccCCC-------CcceEEECCCCCEEEEEe--cCCCEEEEEECCCCcEEE
Confidence 1 123666774432 322 21221000 00112233 344676542 335789999999876543
No 73
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=91.86 E-value=15 Score=38.99 Aligned_cols=197 Identities=12% Similarity=0.116 Sum_probs=107.1
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-|.+... ...++++||.|+++..++...... ....++..|. +.+ ++++...++.+|+..++.|+....
T Consensus 416 ~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~--~~v~~i~~d~-----~g~-lwigt~~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 416 SEGNLWFGTY-LGNISYYNTRLKKFQIIELEKNEL--LDVRVFYEDK-----NKK-IWIGTHAGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp TTSCEEEEET-TEEEEEECSSSCEEEECCSTTTCC--CCEEEEEECT-----TSE-EEEEETTEEEEEESSSSSCCEEEC
T ss_pred CCCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCC--CeEEEEEECC-----CCC-EEEEECCceEEEeCCCCeEEeccc
Confidence 4666666543 236899999999998876431111 1223344441 234 445555779999999988865432
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEE-ECCeEEEEEEEeeC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAE-CGGRIMLVGLLTKN 368 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~-~~G~L~lv~~~~~~ 368 (468)
.... ..+ ......+.. +|.+++ +.....+..||+.++++..+..+....... ..+.+ .+|.|++... .
T Consensus 487 ~~~~-~~~---~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~- 558 (781)
T 3v9f_A 487 TSNS-QLL---ENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--E- 558 (781)
T ss_dssp TTTS-SCS---CSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--T-
T ss_pred Cccc-ccc---cceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--C-
Confidence 2110 000 001122333 566654 444357999999999998764322111111 22333 3678876542 1
Q ss_pred CccEEEE-EEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 369 AATCVCI-WELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 369 ~~~~i~V-w~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
.+ ++++..+++++.... ...+ ....+.-.+...+|.|++.. ...+..||+++++++..
T Consensus 559 -----Glv~~~d~~~~~~~~~~~-~~gl----~~~~i~~i~~d~~g~lW~~t----~~Gl~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 559 -----GLVCFPSARNFDYQVFQR-KEGL----PNTHIRAISEDKNGNIWAST----NTGISCYITSKKCFYTY 617 (781)
T ss_dssp -----EEEEESCTTTCCCEEECG-GGTC----SCCCCCEEEECSSSCEEEEC----SSCEEEEETTTTEEEEE
T ss_pred -----CceEEECCCCCcEEEccc-cCCC----CCceEEEEEECCCCCEEEEc----CCceEEEECCCCceEEe
Confidence 23 666776666655432 1111 11111122334567887753 24699999999988776
No 74
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.78 E-value=3.7 Score=43.93 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=82.1
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-c-CcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-D-GEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~-~~v~vy~s~t~~W 287 (468)
+...+|.|++.+....++.+.++-.+..+.|-..... ...++.+|+ . ...||+... . ..+++++.....=
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~----~P~gIaVDp--~--~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC----CEEEEEEET--T--TTEEEEEECSSSCEEEEEETTSCCE
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC----CcceEEEec--C--CCCEEEecCCCCCeEEEEecCCCce
Confidence 5556778888887777888888876665555321111 123455552 1 235666542 2 3477777643221
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCC-CCceEEEECCeEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL-NDHTLAECGGRIMLVG 363 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~ 363 (468)
+.+.. ..+. ...++.+ +|.|||.......|.++|+....-..+ +...... ....|+..+++||++.
T Consensus 550 ~~lv~--~~l~-------~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v-~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 550 YSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp EEEEC--SSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-EECTTTTSSEEEEEEETTEEEEEE
T ss_pred EEEEe--CCCC-------CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE-ecCCCccCCCCEEEEeCCEEEEEE
Confidence 11110 0111 1224444 589999988778999999976544443 2111111 1235667899999876
Q ss_pred EEeeCCccEEEEEEEecC
Q 012227 364 LLTKNAATCVCIWELQKM 381 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~ 381 (468)
... -.|++.+..
T Consensus 620 ~~~------~~I~~~dk~ 631 (791)
T 3m0c_C 620 IIN------EAIFSANRL 631 (791)
T ss_dssp TTT------TEEEEEETT
T ss_pred CCC------CEEEEEeCC
Confidence 322 266666643
No 75
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=91.58 E-value=8 Score=35.37 Aligned_cols=193 Identities=11% Similarity=0.102 Sum_probs=95.9
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-|++.+....+++++||.+++...+.... . ..++..+ +. .+++ ++....+.+||..+++++.+..
T Consensus 23 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~----~--~~~i~~~--~d---G~l~-v~~~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 23 VSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA----P--VSSVALR--QS---GGYV-ATIGTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEECSS----C--EEEEEEB--TT---SSEE-EEETTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEeCCC----c--eEEEEEC--CC---CCEE-EEECCeEEEEECCCCcEEEEEe
Confidence 35666777766678999999998776543321 1 2334444 21 2233 3445679999998888765433
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEc-----------CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRS-----------DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR 358 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~-----------~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~ 358 (468)
..... +. . ....+.+ +|.+|+-.. ....|..+|.... ...+..... ....++.. +|+
T Consensus 91 ~~~~~--~~--~-~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~---~pngi~~spdg~ 161 (297)
T 3g4e_A 91 VDNDK--KN--N-RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVD---ISNGLDWSLDHK 161 (297)
T ss_dssp CCTTC--SS--E-EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEES---BEEEEEECTTSC
T ss_pred cCCCC--CC--C-CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccc---cccceEEcCCCC
Confidence 22110 00 0 1122333 688777542 1235778887543 322211000 01123332 564
Q ss_pred -EEEEEEEeeCCccEEEEEEEecCCCCeEE---EEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227 359 -IMLVGLLTKNAATCVCIWELQKMTLLWKE---VDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS 434 (468)
Q Consensus 359 -L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~---v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t 434 (468)
||++... ...|.+|.++..++.... +..++... + ...-.++..+|.||+... ..+.|.+||+++
T Consensus 162 ~lyv~~~~----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-----~-~p~g~~~d~~G~lwva~~--~~~~v~~~d~~t 229 (297)
T 3g4e_A 162 IFYYIDSL----SYSVDAFDYDLQTGQISNRRSVYKLEKEE-----Q-IPDGMCIDAEGKLWVACY--NGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEEGG----GTEEEEEEECTTTCCEEEEEEEEECCGGG-----C-EEEEEEEBTTSCEEEEEE--TTTEEEEECTTT
T ss_pred EEEEecCC----CCcEEEEeccCCCCcccCcEEEEECCCCC-----C-CCCeeEECCCCCEEEEEc--CCCEEEEEcCCC
Confidence 5554421 234555555434444322 12222110 0 011123445677877543 246799999997
Q ss_pred CcEE
Q 012227 435 REWL 438 (468)
Q Consensus 435 ~~w~ 438 (468)
++..
T Consensus 230 G~~~ 233 (297)
T 3g4e_A 230 GKRL 233 (297)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 7654
No 76
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=91.06 E-value=9.5 Score=35.23 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=96.4
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCC----cceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKV----WSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDS 282 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~----~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s 282 (468)
+...+..+++.......+.++|+.|++.. .++...... ......++.+++ . + -++++... +..+.+||.
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d-g-~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--A-T-NTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--T-T-TEEEEEEESSSCEEEEEET
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--C-C-CEEEEEecCCCceEEEEcC
Confidence 44445567777766678999999998864 333311100 001123344442 1 1 23554442 345899998
Q ss_pred CCCCccCCCCCCCCcccCcccccccceEEECCE-EEEEEcCCCeEEEEECCCCeEEEeecCCCCC--CCC-ceEEEE-CC
Q 012227 283 LRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGI-LYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH--LND-HTLAEC-GG 357 (468)
Q Consensus 283 ~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~-lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~--~~~-~~l~~~-~G 357 (468)
.+++=.. .++..-..+ ..-.+.-+|. +|+.. ....|..+|+.+.+.... .+.+.. ... ..++.. +|
T Consensus 172 ~~~~~~~--~~~~~~~~~-----~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg 242 (353)
T 3vgz_A 172 GNIKLKT--AIQNTGKMS-----TGLALDSEGKRLYTTN-ADGELITIDTADNKILSR-KKLLDDGKEHFFINISLDTAR 242 (353)
T ss_dssp TTTEEEE--EECCCCTTC-----CCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEE-EECCCSSSCCCEEEEEEETTT
T ss_pred CCCceEE--EecCCCCcc-----ceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEE-EEcCCCCCCcccceEEECCCC
Confidence 7654221 111000000 1112222554 55544 456899999998865442 222111 111 123333 45
Q ss_pred e-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 358 R-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 358 ~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
+ ||+... ....+.+| |..+.+......++.. ..+....+++.+|+.. ...+.+.+||+.+++
T Consensus 243 ~~l~~~~~----~~~~v~~~--d~~~~~~~~~~~~~~~---------~~~~~s~dg~~l~v~~--~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 243 QRAFITDS----KAAEVLVV--DTRNGNILAKVAAPES---------LAVLFNPARNEAYVTH--RQAGKVSVIDAKSYK 305 (353)
T ss_dssp TEEEEEES----SSSEEEEE--ETTTCCEEEEEECSSC---------CCEEEETTTTEEEEEE--TTTTEEEEEETTTTE
T ss_pred CEEEEEeC----CCCEEEEE--ECCCCcEEEEEEcCCC---------ceEEECCCCCEEEEEE--CCCCeEEEEECCCCe
Confidence 5 554431 12444555 6544444333333221 0122233556676643 235789999999887
Q ss_pred EEE
Q 012227 437 WLK 439 (468)
Q Consensus 437 w~~ 439 (468)
...
T Consensus 306 ~~~ 308 (353)
T 3vgz_A 306 VVK 308 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 77
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.05 E-value=7 Score=37.96 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=81.0
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W 287 (468)
++..+|.|++.+....++.++++-.+....+-..... ...++.+|+ . ...+++... ...+++++.....=
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~----~P~~iavdp--~--~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC----CEEEEEEET--T--TTEEEEEECSSSCCEEEEETTSCSC
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC----CcceEEEec--c--cCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 5555788888887777888998877665544321111 123455562 1 235665542 23477777643211
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCC-CCceEEEECCeEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL-NDHTLAECGGRIMLVG 363 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~ 363 (468)
+.+. ..... ...++.+ ++.|||.......|.++|+....-..+.. .+... .-..++..++.||++.
T Consensus 238 ~~~~--~~~l~-------~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 238 YSLV--TENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp EEEE--CSSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-CSSTTSSEEEEEEETTEEEEEE
T ss_pred EEEE--ECCCC-------ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-CCCCCCCCEEEEEeCCEEEEec
Confidence 1110 00111 1224444 58999998877899999997654443311 11111 1235666889999876
Q ss_pred EEeeCCccEEEEEEEecC
Q 012227 364 LLTKNAATCVCIWELQKM 381 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~ 381 (468)
... -.|++.+..
T Consensus 308 ~~~------~~V~~~~~~ 319 (400)
T 3p5b_L 308 IIN------EAIFSANRL 319 (400)
T ss_dssp SSS------CSEEEEESS
T ss_pred CCC------CeEEEEEcC
Confidence 321 146666643
No 78
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.04 E-value=10 Score=36.44 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=74.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~~~~~ 292 (468)
.+.|++... ..+...++.+++...+-.. . ....++.+|+ ..-+|++.... ..+..++......+.+..
T Consensus 87 ~~~l~~~~~--~~I~~i~~~~~~~~~~~~~-~----~~~~gl~~d~----~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 87 EPVLLFANR--IDIRQVLPHRSEYTLLLNN-L----ENAIALDFHH----RRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CCEEEEECB--SCEEEECTTSCCCEEEECS-C----SCEEEEEEET----TTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred cceeEeecC--ccceeeccCCCcEEEEecC-C----CccEEEEEec----CCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 455555443 2577788877665544331 1 1235666662 22467766543 347778776654333211
Q ss_pred CCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEEEEEEe
Q 012227 293 MPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIMLVGLLT 366 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~lv~~~~ 366 (468)
.... ...++.+ +|.|||.......|..+|+....-..+ +.. .... ..++.- +|.||+....
T Consensus 156 --~~~~-------~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l-~~~--~l~~P~giavdp~~g~ly~td~~- 222 (386)
T 3v65_B 156 --TGLE-------SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQ--SLEKPRAIALHPMEGTIYWTDWG- 222 (386)
T ss_dssp --SSCS-------CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE-ECS--SCSCEEEEEEETTTTEEEEEECS-
T ss_pred --CCCC-------CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe-ecC--CCCCCcEEEEEcCCCeEEEeccC-
Confidence 0100 1123333 689999988777899999876543333 211 1111 234443 6888876421
Q ss_pred eCCccEEEEEEEecC
Q 012227 367 KNAATCVCIWELQKM 381 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~ 381 (468)
. .-.|++++..
T Consensus 223 --~--~~~I~r~~~d 233 (386)
T 3v65_B 223 --N--TPRIEASSMD 233 (386)
T ss_dssp --S--SCEEEEEETT
T ss_pred --C--CCEEEEEeCC
Confidence 1 1257777754
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.01 E-value=10 Score=35.54 Aligned_cols=207 Identities=7% Similarity=-0.084 Sum_probs=83.6
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCc-eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQS-FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTR 289 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~ 289 (468)
+.+|-+++.......+.+||..+++ +..+........ ....+.+.+ +.-.++..+.++.+.+||..++. |..
T Consensus 64 s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 64 APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR--AATFVRWSP----NEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp CTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS--CEEEEECCT----TSSCCEEEESSSCEEECCC-----CCC
T ss_pred eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC--ceEEEEECC----CCCEEEEEecCCeEEEEEECCccccee
Confidence 3345444444445679999998877 222111111111 122333331 12234444456679999987654 543
Q ss_pred CCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEE---------------EeecCCCCCCCCceE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWK---------------QFIIPTPLHLNDHTL 352 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~---------------~i~~P~p~~~~~~~l 352 (468)
...+..... ..-..+.+ +|.+.+.+.....|..||+.+.... ...... .+.....-
T Consensus 138 ~~~~~~~h~------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 210 (377)
T 3dwl_C 138 SKHLKRPLR------STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA 210 (377)
T ss_dssp CEEECSSCC------SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred eeEeecccC------CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence 322221000 01112222 4555555555567888998643211 111111 11111222
Q ss_pred EEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEE
Q 012227 353 AEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTY 430 (468)
Q Consensus 353 ~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~Y 430 (468)
+.+ +|++++.+. . ...+.||.+.........+..+... .. .+.-.++..++.+++.. + .+.++.|
T Consensus 211 ~~~sp~~~~l~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~-----~~-~v~~~~~s~~~~~l~~~-~--~~~~~~~ 277 (377)
T 3dwl_C 211 VGFSPSGNALAYAG-H---DSSVTIAYPSAPEQPPRALITVKLS-----QL-PLRSLLWANESAIVAAG-Y--NYSPILL 277 (377)
T ss_dssp EEECTTSSCEEEEE-T---TTEEC-CEECSTTSCEEECCCEECS-----SS-CEEEEEEEETTEEEEEE-S--SSSEEEE
T ss_pred EEECCCCCEEEEEe-C---CCcEEEEECCCCCCcceeeEeecCC-----CC-ceEEEEEcCCCCEEEEE-c--CCcEEEE
Confidence 222 566555443 1 2578999887654332222222110 00 01112233355554432 2 3456688
Q ss_pred ECCCCcEEEccCCc
Q 012227 431 NVMSREWLKVPGCV 444 (468)
Q Consensus 431 D~~t~~w~~v~~~~ 444 (468)
+.....|+.+..+.
T Consensus 278 ~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 278 QGNESGWAHTRDLD 291 (377)
T ss_dssp CCCC---CCSBCCC
T ss_pred EeCCCceEEEeeec
Confidence 88877776655443
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=90.96 E-value=1.4 Score=41.82 Aligned_cols=137 Identities=9% Similarity=0.021 Sum_probs=60.6
Q ss_pred CCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccCCCCCCCCcccCc
Q 012227 223 GHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTRPGSMPSNIKLPV 301 (468)
Q Consensus 223 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~~~~~p~~~~~~~ 301 (468)
....+.+||..++.+..+-....+.... ..+.+.+ . .-.++..+.++.+.+||..++. |.....+.....
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~s~--~--~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~--- 101 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIV--TCVDWAP--K--SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR--- 101 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCE--EEEEECT--T--TCCEEEEETTSSEEEC------CCCCEEECCCCSS---
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceE--EEEEEeC--C--CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC---
Confidence 3456888888888766555443222222 2333332 1 1234444446679999998876 544322111100
Q ss_pred ccccccceEEE--CCEEEEEEcCCCeEEEEECCCCe----EEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEE
Q 012227 302 SLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGV----WKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCV 373 (468)
Q Consensus 302 ~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~----w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i 373 (468)
.-..+.+ +|...+.+.....|..+|+.+++ ...+ ..+ +.....-+.+ +|++.+++.. ...+
T Consensus 102 ----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~~~~~----d~~i 170 (377)
T 3dwl_C 102 ----AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL--KRP-LRSTILSLDWHPNNVLLAAGCA----DRKA 170 (377)
T ss_dssp ----CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE--CSS-CCSCEEEEEECTTSSEEEEEES----SSCE
T ss_pred ----ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe--ecc-cCCCeEEEEEcCCCCEEEEEeC----CCEE
Confidence 0111222 45554555555678888888764 2222 111 1111222222 5666555432 2468
Q ss_pred EEEEEe
Q 012227 374 CIWELQ 379 (468)
Q Consensus 374 ~Vw~ld 379 (468)
.+|.++
T Consensus 171 ~iwd~~ 176 (377)
T 3dwl_C 171 YVLSAY 176 (377)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999875
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=90.90 E-value=9.2 Score=34.83 Aligned_cols=211 Identities=9% Similarity=0.041 Sum_probs=91.6
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccCCCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTRPGSM 293 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~~~~~ 293 (468)
|-+++.......+.+||..++++..+.....+.... ..+.+. +......++..+.++.+.+||..++. +... .+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v--~~v~~~--p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-~~ 141 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV--NSVQWA--PHEYGPMLLVASSDGKVSVVEFKENGTTSPI-II 141 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-EE
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCce--eEEEeC--cCCCCcEEEEEECCCcEEEEEecCCCceeee-ee
Confidence 655666555678999999888665433221111122 223333 11111234444456679999987652 3211 00
Q ss_pred CCCcccCcccccccceE--------EECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEE--C---Ce
Q 012227 294 PSNIKLPVSLNFRSQAV--------SVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAEC--G---GR 358 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v--------~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~--~---G~ 358 (468)
......-....+..... ..++.+.+.++....|..+|+.+. .+.... ....+.....-+.. + +.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~-~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-EECCCSSCEEEEEECCCCSSSE
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-EecCCCCceEEEEECCCCCCce
Confidence 00000000000000000 012345555555567888887654 343321 11122222222333 2 34
Q ss_pred EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECC-CCcE
Q 012227 359 IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVM-SREW 437 (468)
Q Consensus 359 L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~-t~~w 437 (468)
+++.+ .. ..++.||.++.....|....... ..+.+. +.-..+..++.+++.. + ..+.+..|+.. .++|
T Consensus 221 ~las~-s~---D~~v~iWd~~~~~~~~~~~~~~~----~~~~~~-v~~~~~s~~g~~las~-~-~D~~v~lw~~~~~g~w 289 (297)
T 2pm7_B 221 YMASV-SQ---DRTCIIWTQDNEQGPWKKTLLKE----EKFPDV-LWRASWSLSGNVLALS-G-GDNKVTLWKENLEGKW 289 (297)
T ss_dssp EEEEE-ET---TSCEEEEEESSTTSCCEEEESSS----SCCSSC-EEEEEECSSSCCEEEE-E-TTSCEEEEEECTTSCE
T ss_pred EEEEE-EC---CCcEEEEEeCCCCCccceeeeec----ccCCCc-EEEEEECCCCCEEEEE-c-CCCcEEEEEECCCCcE
Confidence 44433 22 25789998876555675431100 011111 1111222233333322 2 24567788865 5678
Q ss_pred EEccC
Q 012227 438 LKVPG 442 (468)
Q Consensus 438 ~~v~~ 442 (468)
+.+..
T Consensus 290 ~~~~~ 294 (297)
T 2pm7_B 290 EPAGE 294 (297)
T ss_dssp EEC--
T ss_pred Eeccc
Confidence 87653
No 82
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=90.88 E-value=9.3 Score=34.83 Aligned_cols=196 Identities=11% Similarity=0.092 Sum_probs=89.5
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
.+|-+++... ...+.+||..+++... +..............+.+.+ +.-.++..+.++.+.+|+..++......
T Consensus 61 ~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC----CCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 3444444444 5678899987765321 11100000111223333431 1223444444667999999887643221
Q ss_pred CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK 367 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~ 367 (468)
...... .....+.+ +|...+.+.....|..||+.+.+.... +.. +.....-+.. +|++++++..
T Consensus 136 ~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~-- 203 (337)
T 1gxr_A 136 ELTSSA-------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-FQG--HTDGASCIDISNDGTKLWTGGL-- 203 (337)
T ss_dssp EEECSS-------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECC--CSSCEEEEEECTTSSEEEEEET--
T ss_pred ecccCC-------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-eec--ccCceEEEEECCCCCEEEEEec--
Confidence 111100 00112222 565555555556799999988765443 221 1111222222 6666655432
Q ss_pred CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
...+.+|.+... +.+..+.. .+ ...-.++. .+..+++. ...+.+..||+.+++...+.
T Consensus 204 --dg~i~~~d~~~~----~~~~~~~~------~~-~v~~~~~s~~~~~l~~~---~~~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 204 --DNTVRSWDLREG----RQLQQHDF------TS-QIFSLGYCPTGEWLAVG---MESSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp --TSEEEEEETTTT----EEEEEEEC------SS-CEEEEEECTTSSEEEEE---ETTSCEEEEETTSSCEEEEC
T ss_pred --CCcEEEEECCCC----ceEeeecC------CC-ceEEEEECCCCCEEEEE---cCCCcEEEEECCCCCeEEEc
Confidence 246788855432 22222211 00 01112222 34444332 23467888998887765554
No 83
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=90.84 E-value=13 Score=36.27 Aligned_cols=204 Identities=10% Similarity=0.101 Sum_probs=96.5
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecC--CCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELP--ARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~ 290 (468)
+|-.++.......+++++..+++....+ ...........+.+..+ . ...+.++.+ .++.+.+||..++.-...
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD--S--DGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC--T--TSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCC--C--CCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 4543444334457888887766543201 11111112222333222 0 113344444 455799999876543211
Q ss_pred CCCCCCcccCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCeEEE-eecCC----------------------CCC
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGVWKQ-FIIPT----------------------PLH 346 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~w~~-i~~P~----------------------p~~ 346 (468)
- +... . ..-..+.+ +|.+.+.+.....|..+|+.+.+... +.... ...
T Consensus 236 ~-~~~h-~------~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 236 W-LFGH-K------HFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp E-CCCC-S------SCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred e-ecCC-C------CceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 0 0000 0 00112222 67666666666789999998876433 22110 000
Q ss_pred CCCceEEEE-CCeEEEEEEEeeCCccEEEEEEE-ecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCC
Q 012227 347 LNDHTLAEC-GGRIMLVGLLTKNAATCVCIWEL-QKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQM 424 (468)
Q Consensus 347 ~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~l-d~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 424 (468)
.....+... +|++.+++. .....+.||.+ +.....+..+..+... . . ...+....+.+++.......
T Consensus 308 ~~v~~i~~~~~~~~l~~~~---~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~----~--v~~~~~~~~~~~v~~~~~~~ 376 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFV---EATKCIIILEMSEKQKGDLALKQIITFP--Y----N--VISLSAHNDEFQVTLDNKES 376 (450)
T ss_dssp CCEEEEEECSSSSEEEEEE---TTCSEEEEEEECSSSTTCEEEEEEEECS--S----C--EEEEEEETTEEEEEECCTTC
T ss_pred EEEEEEEEeCCCCEEEEEE---CCCCeEEEEEeccCCCCceeeccEeccC--C----c--eEEEEecCCcEEEEEecccC
Confidence 000122222 466555543 12368999998 3344667776666422 1 0 11112223556555443221
Q ss_pred -------CeEEEEECCCCcEEEc
Q 012227 425 -------NRLVTYNVMSREWLKV 440 (468)
Q Consensus 425 -------~~l~~YD~~t~~w~~v 440 (468)
-.++.+|.++++|+..
T Consensus 377 ~~~~~~~i~v~~~~~~~~~~~~~ 399 (450)
T 2vdu_B 377 SGVQKNFAKFIEYNLNENSFVVN 399 (450)
T ss_dssp CSSCCCSEEEEEEETTTTEEEEC
T ss_pred CCCCCcceEEEEEEcCCCeEEEc
Confidence 1678888888888643
No 84
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.63 E-value=11 Score=35.14 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=75.4
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.....+.+.+||..+++...+-..... .....+. +.+ +.++++.++ ++.+.+||..++.-.. ..
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~--~~p-----dg~~lasg~~dg~i~iwd~~~~~~~~-~~ 208 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGV--LHK-----DSLLLALYSPDGILDVYNLSSPDQAS-SR 208 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEE--ECT-----TSCEEEEECTTSCEEEEESSCTTSCC-EE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEE--ECC-----CCCEEEEEcCCCEEEEEECCCCCCCc-cE
Confidence 344444444455788999888877543321111 1122233 331 134555544 5669999998765320 01
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC---CceEEEE-CCeEEEEEEEe
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN---DHTLAEC-GGRIMLVGLLT 366 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~---~~~l~~~-~G~L~lv~~~~ 366 (468)
+..... ..-..+.+ +|...+.+.+ +.|..+|+.+..-.....+...+.. ...+.-. +|++.+++..
T Consensus 209 ~~~~h~------~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~- 280 (343)
T 3lrv_A 209 FPVDEE------AKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN- 280 (343)
T ss_dssp CCCCTT------SCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-
T ss_pred EeccCC------CCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-
Confidence 111000 01112223 5555555544 4899999987542110001000000 0112222 5776665431
Q ss_pred eCCccEEEEEEEecCCCCeEE
Q 012227 367 KNAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~~~~W~~ 387 (468)
....+.||.++.....|+.
T Consensus 281 --~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 281 --ESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp --TTTEEEEEEECTTTCSEEE
T ss_pred --CCCcEEEEEEcccccceEe
Confidence 1357899999887888987
No 85
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=90.59 E-value=11 Score=35.05 Aligned_cols=205 Identities=11% Similarity=0.097 Sum_probs=95.4
Q ss_pred CceEEEEEcCCceEEEEcCC-CCceEecCCCCc---C----CcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCC-
Q 012227 214 GGLVCFLDIGHRNFYVCNPL-TQSFKELPARSV---K----VWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSL- 283 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~-T~~~~~LP~~~~---~----~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~- 283 (468)
+..|++.......+.+|+.. +++...+..... . ........+.++ +. .++++... .+.+.+|+..
T Consensus 97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s--pd---g~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT--PD---NRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC--TT---SCEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC--CC---CcEEEEeCCCCEEEEEEECC
Confidence 33566655455678888873 344332221100 0 000112234444 22 23554443 3458999987
Q ss_pred CCCccCCCCCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECC--CCeEEEeec-C-CCCCC---CCc-eE
Q 012227 284 RNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMV--TGVWKQFII-P-TPLHL---NDH-TL 352 (468)
Q Consensus 284 t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~--~~~w~~i~~-P-~p~~~---~~~-~l 352 (468)
++............. .....+.+ +|+ +|+.......+..||+. ++++..+.. . .+... ... .+
T Consensus 172 ~g~~~~~~~~~~~~g------~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAG------FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp TSCEEEEEEEECCTT------CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred CCcEEEeeeEEcCCC------CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 554432211000000 00112223 565 77766655677777765 466654321 1 11110 111 22
Q ss_pred EEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEE
Q 012227 353 AEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTY 430 (468)
Q Consensus 353 ~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~Y 430 (468)
+.. +|+..++.... ...+.||.++.. +.++.+..++..- ....-.++. ++..||+.. ...+.+.+|
T Consensus 246 ~~spdG~~l~v~~~~---~~~v~v~~~~~~-g~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~--~~~~~v~v~ 313 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRG---YNTLAVFAVTAD-GHLTLIQQISTEG------DFPRDFDLDPTEAFVVVVN--QNTDNATLY 313 (347)
T ss_dssp EECTTSCEEEEEEET---TTEEEEEEECGG-GCEEEEEEEECSS------SCCCEEEECTTSSEEEEEE--TTTTEEEEE
T ss_pred EECCCCCEEEEEeCC---CCEEEEEEECCC-CcEEEeEEEecCC------CCcCeEEECCCCCEEEEEE--cCCCcEEEE
Confidence 222 67643333322 357899988753 4666666554310 001122333 455676543 233567677
Q ss_pred --ECCCCcEEEcc
Q 012227 431 --NVMSREWLKVP 441 (468)
Q Consensus 431 --D~~t~~w~~v~ 441 (468)
|.++++.+.+.
T Consensus 314 ~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 314 ARDLTSGKLSLLQ 326 (347)
T ss_dssp EECTTTCCEEEEE
T ss_pred EEeCCCCeEEecc
Confidence 88888888764
No 86
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.51 E-value=11 Score=35.16 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=94.4
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCce--EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSF--KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT 288 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~ 288 (468)
..+|.|+..+....+++.+++.++.. ..+.. ... ...++.+| . ..-+||+.... ..+++++.....=+
T Consensus 44 ~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~----~p~glavd--~--~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 44 FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLL----SPDGLACD--W--LGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp GGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCS----CCCEEEEE--T--TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred eCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCC----CccEEEEE--c--CCCeEEEEECCCCEEEEEECCCCcEE
Confidence 34678888887777888888876531 11111 011 11234444 1 12456665432 35888887543211
Q ss_pred CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLV 362 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv 362 (468)
.+.. .... ...++.+ +|.+||.... ...|..+|+....-..+ ..... ..-..|+.. +|+||++
T Consensus 115 ~l~~--~~~~-------~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~~~l-~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 115 VLFW--QELD-------QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-INSEI-YWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp EEEC--SSCS-------SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSC-SCEEEEEEETTTTEEEEE
T ss_pred EEEe--CCCC-------CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE-EECCC-CCccEEEEeccCCEEEEE
Confidence 1110 1111 1224444 5899998743 46899999875433332 11111 111234444 7889987
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
... .. .|++++.....=..+.. .. ...+......++.+|+. ......|..+|+.+++
T Consensus 184 D~~----~~--~I~~~d~dG~~~~~~~~--~~-------~~~P~glav~~~~lywt--d~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 184 DAK----LN--FIHKSNLDGTNRQAVVK--GS-------LPHPFALTLFEDILYWT--DWSTHSILACNKYTGE 240 (318)
T ss_dssp ETT----TT--EEEEEETTSCSCEEEEC--SC-------CSCEEEEEEETTEEEEE--ETTTTEEEEEETTTCC
T ss_pred ECC----CC--EEEEEcCCCCceEEEec--CC-------CCCceEEEEeCCEEEEE--ecCCCeEEEEECCCCC
Confidence 532 23 56666654222222211 00 01123333346777764 2345789999996554
No 87
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=90.39 E-value=4 Score=37.33 Aligned_cols=198 Identities=7% Similarity=0.056 Sum_probs=93.6
Q ss_pred cCceEEEE-------EcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227 213 AGGLVCFL-------DIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN 285 (468)
Q Consensus 213 ~~GLl~~~-------~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~ 285 (468)
.+|-+++. +.....++++|+.++++..+..+..........++..+ +. ..++++......+.+|+.. +
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~--~~--~g~l~v~~~~~~l~~~d~~-g 101 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--RD--ANQLFVADMRLGLLVVQTD-G 101 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC--SS--SSEEEEEETTTEEEEEETT-S
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe--cC--CCcEEEEECCCCEEEEeCC-C
Confidence 45655555 33335799999999988765431000001123455555 11 1356655544568899987 6
Q ss_pred CccCC-CCCCCCcccCcccccccceEEE--CCEEEEEEcCC---------------CeEEEEECCCCeEEEeecCCCCCC
Q 012227 286 SWTRP-GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDP---------------EGIVSYNMVTGVWKQFIIPTPLHL 347 (468)
Q Consensus 286 ~W~~~-~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~---------------~~i~~fD~~~~~w~~i~~P~p~~~ 347 (468)
+...+ ....... +. . ....+.+ +|.+|+..... ..|..||+. ++...+.....
T Consensus 102 ~~~~~~~~~~~~~--~~--~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--- 172 (314)
T 1pjx_A 102 TFEEIAKKDSEGR--RM--Q-GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ--- 172 (314)
T ss_dssp CEEECCSBCTTSC--BC--B-CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES---
T ss_pred CEEEEEeccCCCc--cc--c-CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC---
Confidence 65443 2111110 00 0 1223334 68888766432 468889987 55544311110
Q ss_pred CCceEEEE-----CC-eEEEEEEEeeCCccEEEEEEEecCCCCeEEE---EeeChhhhhcccCcceEEEEEecCCEEEEE
Q 012227 348 NDHTLAEC-----GG-RIMLVGLLTKNAATCVCIWELQKMTLLWKEV---DRMPNIWCLDFYGKHVRMTCLGNKGLLMLS 418 (468)
Q Consensus 348 ~~~~l~~~-----~G-~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v---~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~ 418 (468)
....++.. +| .||+... ....+.+|.++. ++..... ..++.... + ...-.++..+|.||+.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~----~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~----~-~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAET----PTKKLWSYDIKG-PAKIENKKVWGHIPGTHE----G-GADGMDFDEDNNLLVA 242 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET----TTTEEEEEEEEE-TTEEEEEEEEEECCCCSS----C-EEEEEEEBTTCCEEEE
T ss_pred CcceEEEecccCCCCCEEEEEEC----CCCeEEEEECCC-CCccccceEEEECCCCCC----C-CCCceEECCCCCEEEE
Confidence 01123333 45 3554431 124455555442 2333221 12221100 0 0112234456777764
Q ss_pred eeeCCCCeEEEEECCCCc
Q 012227 419 LRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 419 ~~~~~~~~l~~YD~~t~~ 436 (468)
.. ..+.|..||+++++
T Consensus 243 ~~--~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 243 NW--GSSHIEVFGPDGGQ 258 (314)
T ss_dssp EE--TTTEEEEECTTCBS
T ss_pred Ec--CCCEEEEEcCCCCc
Confidence 32 24579999998554
No 88
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=90.27 E-value=7.4 Score=36.76 Aligned_cols=110 Identities=9% Similarity=-0.009 Sum_probs=57.5
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+.+|-.++.......+.+||..+++....-. ........+.+ . ..+...++..+.++.+.+||..++.-...-
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~--s---~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSEVNCVAA--C---PGKDTIFLSCGEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEE--C---TTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEE--c---cCCCceeeeeccCCceEEEECCCCceeeee
Confidence 4466555655555679999999887653222 11112222333 2 122334444555677999998876532211
Q ss_pred CCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCe
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
..... ......+.+ ++.+.+.+.....|..||+.+.+
T Consensus 221 ~~~~~-------~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 221 DFCAS-------DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp CCTTC-------CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred eeccc-------cccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 11100 001122333 35555555555678889988754
No 89
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=90.24 E-value=10 Score=34.79 Aligned_cols=191 Identities=9% Similarity=0.080 Sum_probs=94.0
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCc-cCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSW-TRP 290 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W-~~~ 290 (468)
..+.+++.......+.++|+.|++....-... ... . ++.+++ . + -.+++... +..+.+||..++.- ...
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~--~-~~~~s~--d-g-~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLG--YDF--V-DTAITS--D-C-SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--CCE--E-EEEECS--S-S-CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEcc--CCc--c-eEEEcC--C-C-CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 34556666665668999999999875432221 111 1 344442 1 1 23554444 45699999887753 111
Q ss_pred CCCCCCcccCcccccccceEEE--CCE-EEEEEcCC-C--eEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe-EEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDP-E--GIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR-IMLV 362 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~-~--~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~-L~lv 362 (468)
.... .....++.+ +|. +| ..... . .|..+|+.+.+.... ++.... ...++.. +|+ |++.
T Consensus 79 --~~~~-------~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~--~~~~~~spdg~~l~~~ 145 (331)
T 3u4y_A 79 --IQEG-------QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFIST-IPIPYD--AVGIAISPNGNGLILI 145 (331)
T ss_dssp --EEEC-------SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEE-EECCTT--EEEEEECTTSSCEEEE
T ss_pred --cccC-------CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEE-EECCCC--ccceEECCCCCEEEEE
Confidence 0000 001111222 444 55 43332 2 799999998876543 332211 1223332 665 5554
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEE-EEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKE-VDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~-v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
.. . ....+.+|.++........ ...++. +....-.++. ++..+|+.. ...+.+.+||+++++.
T Consensus 146 ~~-~--~~~~i~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~v~~--~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 146 DR-S--SANTVRRFKIDADGVLFDTGQEFISG-------GTRPFNITFTPDGNFAFVAN--LIGNSIGILETQNPEN 210 (331)
T ss_dssp EE-T--TTTEEEEEEECTTCCEEEEEEEEECS-------SSSEEEEEECTTSSEEEEEE--TTTTEEEEEECSSTTS
T ss_pred ec-C--CCceEEEEEECCCCcEeecCCccccC-------CCCccceEECCCCCEEEEEe--CCCCeEEEEECCCCcc
Confidence 32 1 1233889988854221111 111111 1111122333 344576643 2356899999988764
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.17 E-value=8.8 Score=35.17 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=48.6
Q ss_pred cCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 222 IGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 222 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
.....+.+||............. .......+.+..+ .....++..+.+..+.+||..++.-... +... .
T Consensus 147 s~d~~~~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~----~~~~~~~s~~~d~~i~i~d~~~~~~~~~--~~~h-~--- 215 (340)
T 4aow_A 147 SRDKTIKLWNTLGVCKYTVQDES-HSEWVSCVRFSPN----SSNPIIVSCGWDKLVKVWNLANCKLKTN--HIGH-T--- 215 (340)
T ss_dssp ETTSCEEEECTTSCEEEEECSSS-CSSCEEEEEECSC----SSSCEEEEEETTSCEEEEETTTTEEEEE--ECCC-S---
T ss_pred cCCCeEEEEEeCCCceEEEEecc-ccCcccceEEccC----CCCcEEEEEcCCCEEEEEECCCCceeeE--ecCC-C---
Confidence 33456778887655443332211 1111222233211 2222333334456699999887653211 0000 0
Q ss_pred ccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEE
Q 012227 302 SLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWK 337 (468)
Q Consensus 302 ~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~ 337 (468)
..-.++.+ +|.+.+.+.....|..||+.+..-.
T Consensus 216 ---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 216 ---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp ---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred ---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence 00112222 5666666656678889999887543
No 91
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.08 E-value=11 Score=36.71 Aligned_cols=205 Identities=10% Similarity=0.004 Sum_probs=103.2
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC--cEEEEeCCCCC-cc
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG--EYEIYDSLRNS-WT 288 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~--~v~vy~s~t~~-W~ 288 (468)
..+|-|++.+....++.++|+.+++...+..... ... + .++ +. .-.+++..... .+.+++..++. ..
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~---~~~-i--a~~--~~--g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK---GGK-P--AVT--KD--KQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC---BCB-C--EEC--TT--SSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC---CCc-e--eEe--cC--CCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3677788888777789999999988776544211 111 2 233 11 12455444333 57777765432 11
Q ss_pred CCCCCCC-CcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeec--CCCCCCCC-c-eEEEE--CCe
Q 012227 289 RPGSMPS-NIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFII--PTPLHLND-H-TLAEC--GGR 358 (468)
Q Consensus 289 ~~~~~p~-~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~--P~p~~~~~-~-~l~~~--~G~ 358 (468)
.+..... ... ...++.+ +|.||+ ......|..||+.+.....+.. ........ . .++.. +|.
T Consensus 209 ~~g~~~~~~~~-------~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 209 RIGQLGSTFSG-------KIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp EEEECCTTSCS-------CCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred EeeeccchhcC-------CcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 2211000 000 1112223 689999 4445679999998876554411 11111122 1 55555 588
Q ss_pred EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC-h-hhhhcc---cCcceE-EEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 359 IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP-N-IWCLDF---YGKHVR-MTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 359 L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp-~-~~~~~~---~~~~~~-~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
||+.... .. .|++++.... ...+..-+ . ...... .....+ -.++..+|.||+... ....+|..+|+
T Consensus 281 lyv~d~~----~~--~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-~~~~~I~~~~~ 352 (409)
T 3hrp_A 281 FYMSDQN----LS--SVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-FKGYCLRKLDI 352 (409)
T ss_dssp EEEEETT----TT--EEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-TTTCEEEEEET
T ss_pred EEEEeCC----CC--EEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-CCCCEEEEEEC
Confidence 9876531 12 5666665432 22221111 0 000000 000112 234444566877532 03578999998
Q ss_pred CCCcEEEccC
Q 012227 433 MSREWLKVPG 442 (468)
Q Consensus 433 ~t~~w~~v~~ 442 (468)
.+++...+.+
T Consensus 353 ~~G~v~~~~g 362 (409)
T 3hrp_A 353 LDGYVSTVAG 362 (409)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEeC
Confidence 8888877754
No 92
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=89.88 E-value=14 Score=35.20 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=57.1
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+.+|-.++.......+.+||..+++....-.. .... ...+.+.+ . .-.++..+.++.+.+||..++.= +.
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~--v~~~~~~~--~--~~~l~s~s~d~~i~iwd~~~~~~--~~ 175 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSNFNLQREIDQA--HVSE--ITKLKFFP--S--GEALISSSQDMQLKIWSVKDGSN--PR 175 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTTSCEEEEETTS--SSSC--EEEEEECT--T--SSEEEEEETTSEEEEEETTTCCC--CE
T ss_pred ecCCCEEEEEECCCCEEEEeCCCcceeeeccc--ccCc--cEEEEECC--C--CCEEEEEeCCCeEEEEeCCCCcC--ce
Confidence 44565555555556899999988877654321 1111 23334442 1 12444444456799999876531 11
Q ss_pred CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
.+... ...-..+.+ +|...+.+.....|..+|+.+.+-..
T Consensus 176 ~~~~h-------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 176 TLIGH-------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp EEECC-------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCC-------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 11000 000112222 55555555555679999998876443
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=89.85 E-value=13 Score=34.94 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=85.3
Q ss_pred CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL 303 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~ 303 (468)
...+.|||..+++....-......... ..+.+.+ . +...++..+.++.+.+||..++........... ..
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~~~--~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~---- 164 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAI--TGMKFNQ--F-NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW-DY---- 164 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBE--EEEEEET--T-EEEEEEEEETTTEEEEEETTSCEEEEEECCCCS-SC----
T ss_pred CCeEEEEeCCCcccceeeecCCcCCce--eEEEeCC--C-CCCEEEEEeCCCEEEEEECCCCceEEEeccCCC-CC----
Confidence 346888888877765443321111222 2333331 0 123344444456799999886554433211100 00
Q ss_pred ccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCe-EEEEEEEeeCCccEEEEEEEec
Q 012227 304 NFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGR-IMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 304 ~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~-L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
....-...-+|.+.+.+.....|..+|+..+....+.. +.....-+.+ +|+ +++.+.. ...+.||.+..
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~ 236 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL----HKAKVTHAEFNPRCDWLMATSSV----DATVKLWDLRN 236 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC----SSSCEEEEEECSSCTTEEEEEET----TSEEEEEEGGG
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc----CCCcEEEEEECCCCCCEEEEEeC----CCEEEEEeCCC
Confidence 00011111256655566666789999996665544421 1111222222 455 5554432 25789997765
Q ss_pred CCCCeEEEEeeChhhhhcccCcceEEEEEec-CCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 381 MTLLWKEVDRMPNIWCLDFYGKHVRMTCLGN-KGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 381 ~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~-~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
....-..+..++.. + .+.-.++.. ++..++... ..+.+.+||+.+.+
T Consensus 237 ~~~~~~~~~~~~~~------~-~v~~~~~s~~~~~~l~~~~--~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 237 IKDKNSYIAEMPHE------K-PVNAAYFNPTDSTKLLTTD--QRNEIRVYSSYDWS 284 (383)
T ss_dssp CCSTTCEEEEEECS------S-CEEEEEECTTTSCEEEEEE--SSSEEEEEETTBTT
T ss_pred CCcccceEEEecCC------C-ceEEEEEcCCCCCEEEEEc--CCCcEEEEECCCCc
Confidence 32222222222110 0 011112222 343333222 34688999987653
No 94
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=89.69 E-value=4.5 Score=38.98 Aligned_cols=192 Identities=11% Similarity=0.102 Sum_probs=93.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~ 289 (468)
+.+|-+++.......+.+||+.+++... ++... ... .++.+++ ..-.+++.+ .++.+.+||..+++...
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~---~~~--~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG---KWS--KILLYDP----IRDLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS---SSE--EEEEEET----TTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC---CCe--eEEEEcC----CCCEEEEEecCCCcEEEEECCCCcEEE
Confidence 4577777777666789999998876543 33211 112 2333331 112454444 35669999988765432
Q ss_pred CCCCCCCcccCcccccccceEEE--CC-EEEEEEc-------CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CC-
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRS-------DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GG- 357 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~-------~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G- 357 (468)
.- +... ....+.+ +| .++.... ....|..||+.+++.... ...+. ....++.. +|
T Consensus 249 ~~--~~~~--------~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~g~ 315 (433)
T 3bws_A 249 KT--DKIG--------LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPPG--NKRHIVSGNTEN 315 (433)
T ss_dssp EC--CCCS--------EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEEE--CEEEEEECSSTT
T ss_pred Ee--cCCC--------CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCCC--CcceEEECCCCC
Confidence 11 1110 0112223 45 4444432 234788999988765443 11111 11122222 45
Q ss_pred eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCC------------C
Q 012227 358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQ------------M 424 (468)
Q Consensus 358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~------------~ 424 (468)
.|++.+. ....+.+|.++. .+.+..++... ...-.++. ++..+++...... .
T Consensus 316 ~l~~~~~----~~~~v~v~d~~~----~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 316 KIYVSDM----CCSKIEVYDLKE----KKVQKSIPVFD-------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp EEEEEET----TTTEEEEEETTT----TEEEEEEECSS-------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred EEEEEec----CCCEEEEEECCC----CcEEEEecCCC-------CCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 4555432 235677785442 23333332110 01122333 3445665432211 2
Q ss_pred CeEEEEECCCCcEEEc
Q 012227 425 NRLVTYNVMSREWLKV 440 (468)
Q Consensus 425 ~~l~~YD~~t~~w~~v 440 (468)
+.+.+||+++++....
T Consensus 381 g~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred eEEEEEECCCCcEEEE
Confidence 4899999998875543
No 95
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.48 E-value=20 Score=36.61 Aligned_cols=194 Identities=12% Similarity=0.032 Sum_probs=97.8
Q ss_pred CceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
++++++.......+.|+|+.|++.. .++... .. .++.+++ +.-.+++.+.++.+.+||..+.+-+.+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~----~p--~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY----AV--HISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS----CE--EEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC----Cc--cceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 4566677666778999999998765 354321 11 1333331 12245555555679999985222222222
Q ss_pred CCCCcccCcccccccceEEE------CC-EEEEEEcCCCeEEEEECCCCeEEE-eecCC-CCCC----CC---ceEEEE-
Q 012227 293 MPSNIKLPVSLNFRSQAVSV------DG-ILYFMRSDPEGIVSYNMVTGVWKQ-FIIPT-PLHL----ND---HTLAEC- 355 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~------~G-~lY~~~~~~~~i~~fD~~~~~w~~-i~~P~-p~~~----~~---~~l~~~- 355 (468)
++... ....+.+ +| .+|+.......+.++|..+.+-.. ++... +... .. ..++..
T Consensus 236 i~~G~--------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~ 307 (567)
T 1qks_A 236 IKIGS--------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 307 (567)
T ss_dssp EECCS--------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred EecCC--------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence 22110 1112222 45 567766666789999988765443 22211 1110 01 112222
Q ss_pred CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCC
Q 012227 356 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMS 434 (468)
Q Consensus 356 ~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t 434 (468)
++..+++... ... +||..+.......++..++...+. .-..+. .+..+|+.. ...+.+.++|.++
T Consensus 308 ~~~~~vv~~~---~~g--~v~~vd~~~~~~~~v~~i~~~~~~-------~d~~~~pdgr~~~va~--~~sn~V~ViD~~t 373 (567)
T 1qks_A 308 YRPEFIVNVK---ETG--KILLVDYTDLNNLKTTEISAERFL-------HDGGLDGSHRYFITAA--NARNKLVVIDTKE 373 (567)
T ss_dssp SSSEEEEEET---TTT--EEEEEETTCSSEEEEEEEECCSSE-------EEEEECTTSCEEEEEE--GGGTEEEEEETTT
T ss_pred CCCEEEEEec---CCC--eEEEEecCCCccceeeeeeccccc-------cCceECCCCCEEEEEe--CCCCeEEEEECCC
Confidence 3444554431 112 566667655555555555432211 112233 334454432 3357899999999
Q ss_pred CcEEE
Q 012227 435 REWLK 439 (468)
Q Consensus 435 ~~w~~ 439 (468)
++...
T Consensus 374 ~kl~~ 378 (567)
T 1qks_A 374 GKLVA 378 (567)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 87653
No 96
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=89.39 E-value=13 Score=34.41 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=80.5
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~W 287 (468)
++..+|.|++.+....++.++|+-.+..+.+-..... ..-++.+|+ . ..++++.... ..+++++.....=
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~----~P~~iavdp--~--~g~ly~~d~~~~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI 155 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC----CEEEEEEET--T--TTEEEEEECSSSCEEEEEETTSCCE
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC----CcceEEeCC--C--CCEEEEEccCCCCeEEEEcCCCCCe
Confidence 5556788888887777899999876554443221111 123445552 1 2356655432 3477777643211
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC-CceEEEECCeEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN-DHTLAECGGRIMLVG 363 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~-~~~l~~~~G~L~lv~ 363 (468)
+.+.. .... ...++.+ ++.|||.....+.|.+||+....-..+ ........ -..++..+|.||++.
T Consensus 156 ~~~~~--~~~~-------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~-~~~~~~~~~P~giav~~~~ly~~d 225 (316)
T 1ijq_A 156 YSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTD 225 (316)
T ss_dssp EEEEC--SSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-EECTTTTSSEEEEEEETTEEEEEE
T ss_pred EEEEE--CCCC-------CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE-eecCCccCCcEEEEEECCEEEEEE
Confidence 11100 0111 1234444 589999998778999999976443333 11111111 134566789999875
Q ss_pred EEeeCCccEEEEEEEecCC
Q 012227 364 LLTKNAATCVCIWELQKMT 382 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~ 382 (468)
... . .|++++..+
T Consensus 226 ~~~----~--~V~~~~~~~ 238 (316)
T 1ijq_A 226 IIN----E--AIFSANRLT 238 (316)
T ss_dssp TTT----T--EEEEEETTT
T ss_pred CCC----C--eEEEEeCCC
Confidence 321 2 566667543
No 97
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=89.37 E-value=11 Score=33.80 Aligned_cols=147 Identities=7% Similarity=0.121 Sum_probs=80.4
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~ 290 (468)
..+|-+++.+.....+.++|+..+....+.... .. ....++.+++ +.++++... ...+.+|+.....-..+
T Consensus 129 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~--~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 129 DNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK-HL--EFPNGVVVND-----KQEIFISDNRAHCVKVFNYEGQYLRQI 200 (286)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEEECTT-TC--SSEEEEEECS-----SSEEEEEEGGGTEEEEEETTCCEEEEE
T ss_pred eCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCC-cc--CCcEEEEECC-----CCCEEEEECCCCEEEEEcCCCCEEEEE
Confidence 346777777766678999998655555443211 11 1124455552 235665543 45699999754432222
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCC-eEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEe
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPE-GIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLT 366 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~-~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~ 366 (468)
.. ..... ...++.+ +|.+|+...... .|..||...+....+....... ....++.. +|+|++.. .
T Consensus 201 ~~-~g~~~-------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~~i~~~~~g~l~vs~--~ 269 (286)
T 1q7f_A 201 GG-EGITN-------YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA-QCFDVALMDDGSVVLAS--K 269 (286)
T ss_dssp SC-TTTSC-------SEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS-CEEEEEEETTTEEEEEE--T
T ss_pred cc-CCccC-------CCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCC-cceeEEECCCCcEEEEC--C
Confidence 11 00000 1223444 688888876554 8999998776665553322111 11133333 78988763 1
Q ss_pred eCCccEEEEEEEec
Q 012227 367 KNAATCVCIWELQK 380 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~ 380 (468)
...+.||.+..
T Consensus 270 ---~~~v~v~~~~~ 280 (286)
T 1q7f_A 270 ---DYRLYIYRYVQ 280 (286)
T ss_dssp ---TTEEEEEECSC
T ss_pred ---CCeEEEEEccc
Confidence 25788997654
No 98
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=89.25 E-value=14 Score=34.46 Aligned_cols=118 Identities=12% Similarity=0.179 Sum_probs=66.0
Q ss_pred CCE-EEEEEcCCCeEEEEECCCCeEEEee-cC-CCCCCCCc-eEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227 313 DGI-LYFMRSDPEGIVSYNMVTGVWKQFI-IP-TPLHLNDH-TLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 313 ~G~-lY~~~~~~~~i~~fD~~~~~w~~i~-~P-~p~~~~~~-~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~ 387 (468)
+|+ +|+.......|..||+.++++..+. .+ .+...... .++.. +|+..++.... ....+.||.++..+++++.
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~--~~~~i~v~~~~~~~g~~~~ 298 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL--KADGVAIFKVDETNGTLTK 298 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS--SSCEEEEEEECTTTCCEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC--CCCEEEEEEEcCCCCcEEE
Confidence 564 6777655678999999888775542 11 11111222 23322 67754443321 1357899999876678877
Q ss_pred EEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEE--EECCCCcEEEcc
Q 012227 388 VDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVT--YNVMSREWLKVP 441 (468)
Q Consensus 388 v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~--YD~~t~~w~~v~ 441 (468)
+..++... . ..-.++. ++..||+... ..+.+.+ +|+++++.+.+.
T Consensus 299 ~~~~~~g~---~----~~~~~~spdg~~l~~~~~--~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 299 VGYQLTGI---H----PRNFIITPNGKYLLVACR--DTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EEEEECSS---C----CCEEEECTTSCEEEEEET--TTTEEEEEEECTTTCCEEECS
T ss_pred eeEecCCC---C----CceEEECCCCCEEEEEEC--CCCCEEEEEEECCCCcEeecc
Confidence 76665310 0 1122333 4555665432 2345555 688899988875
No 99
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=89.04 E-value=6.7 Score=36.01 Aligned_cols=163 Identities=11% Similarity=0.120 Sum_probs=80.9
Q ss_pred eEEEEEcCCceEEEEcCCC-CceEecC--CCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCC--CCCccC
Q 012227 216 LVCFLDIGHRNFYVCNPLT-QSFKELP--ARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSL--RNSWTR 289 (468)
Q Consensus 216 Ll~~~~~~~~~~~V~NP~T-~~~~~LP--~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~--t~~W~~ 289 (468)
.+++.......+.+||..+ ++...+. ...... .....++.+++ .+ -.+++.+ .++.+.+|+.. ++.+..
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p---dg-~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHP---NE-QYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECT---TS-SEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECC---CC-CEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 5555553445788998877 6554322 110100 01112344442 12 2344444 34569999984 444432
Q ss_pred C---CCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECC--CCeEEEee-cCCCCCCCCceEEEE-CCeE
Q 012227 290 P---GSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMV--TGVWKQFI-IPTPLHLNDHTLAEC-GGRI 359 (468)
Q Consensus 290 ~---~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~--~~~w~~i~-~P~p~~~~~~~l~~~-~G~L 359 (468)
. ...+..... ......+.+ +| .+|+.......|..||+. ++++..+. ++... .-..++.. +|+.
T Consensus 217 ~~~~~~~~~~~~~----~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~ 290 (343)
T 1ri6_A 217 VQTLDMMPENFSD----TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKY 290 (343)
T ss_dssp EEEEECSCTTCCS----CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSE
T ss_pred EeeccccCccccc----cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--ccceEEECCCCCE
Confidence 2 111111000 001112333 35 566666556789999987 45555442 22211 11223332 5664
Q ss_pred EEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 360 MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 360 ~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
.++.. .....+.||.++..+++++.+..++
T Consensus 291 l~~~~---~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 291 LIAAG---QKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp EEEEC---TTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEec---CCCCeEEEEEEcCCCceeeEccccc
Confidence 44432 2236889999998778888887665
No 100
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=89.03 E-value=15 Score=34.50 Aligned_cols=197 Identities=9% Similarity=-0.037 Sum_probs=87.3
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCC--cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARS--VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
.++.++... ..+.+.|||..+++........ .+.... ..+.+.+ +.-.++..+.++.+.+||..++.=..
T Consensus 92 ~d~~l~~~s-~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V--~~v~~sp----dg~~l~sgs~d~~i~iwd~~~~~~~~- 163 (344)
T 4gqb_B 92 GERGILVAS-DSGAVELWELDENETLIVSKFCKYEHDDIV--STVSVLS----SGTQAVSGSKDICIKVWDLAQQVVLS- 163 (344)
T ss_dssp TTTEEEEEE-TTSEEEEEEECTTSSCEEEEEEEECCSSCE--EEEEECT----TSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred CCCeEEEEE-CCCEEEEEeccCCCceeEeeccccCCCCCE--EEEEECC----CCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 345544333 3457999999887654322211 111112 2333331 11234444445679999987754211
Q ss_pred CCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE---CCeEEEEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC---GGRIMLVGL 364 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~~ 364 (468)
.+..+. ..-..+.+ +| .+.+.+.....|..+|+.+.+-... +...........+.. ++++++.+.
T Consensus 164 -~~~~h~-------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 164 -SYRAHA-------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp -EECCCS-------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC----CCCEEEEEECSSCTTEEEEEE
T ss_pred -EEcCcC-------CceEEEEecCCCCCceeeeccccccccccccccceeee-eecceeeccceeeeecCCCCcceEEec
Confidence 111000 00112222 33 3444455556788999987654332 111111111112222 455655443
Q ss_pred EeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 365 LTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
. ...+.||.+...+ .+..+.. ... .+.-.++. ++..+++. .+ ..+.+.+||..+++...+.+
T Consensus 235 -~---dg~v~~wd~~~~~----~~~~~~~-----h~~-~v~~v~fsp~g~~~las-gs-~D~~i~vwd~~~~~~~~~~~ 297 (344)
T 4gqb_B 235 -E---NGTVSLVDTKSTS----CVLSSAV-----HSQ-CVTGLVFSPHSVPFLAS-LS-EDCSLAVLDSSLSELFRSQA 297 (344)
T ss_dssp -T---TSEEEEEESCC------CCEEEEC-----CSS-CEEEEEECSSSSCCEEE-EE-TTSCEEEECTTCCEEEEECC
T ss_pred -c---CCcEEEEECCCCc----EEEEEcC-----CCC-CEEEEEEccCCCeEEEE-Ee-CCCeEEEEECCCCcEEEEcC
Confidence 2 2578899554321 1111110 000 01111222 33333332 22 35678899999988766543
No 101
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=88.86 E-value=9.9 Score=34.66 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=66.1
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP 294 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p 294 (468)
|-+++.....+.+.+||..+++....-.. ..... ..+.+.+ ..-.++..+.++.+.+||..++.-.. .+.
T Consensus 35 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--h~~~v--~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~ 104 (312)
T 4ery_A 35 GEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGI--SDVAWSS----DSNLLVSASDDKTLKIWDVSSGKCLK--TLK 104 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCE--EEEEECT----TSSEEEEEETTSEEEEEETTTCCEEE--EEE
T ss_pred CCEEEEeeCCCeEEEEeCCCcccchhhcc--CCCce--EEEEEcC----CCCEEEEECCCCEEEEEECCCCcEEE--EEc
Confidence 33333333345688888887776543221 11112 2333331 12234444445679999987654211 000
Q ss_pred CCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCc
Q 012227 295 SNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAA 370 (468)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~ 370 (468)
... ..-..+.+ +|.+.+.+.....|..+|+.+.+.... ++. +......+.. +|++++++.. .
T Consensus 105 ~~~-------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~----d 170 (312)
T 4ery_A 105 GHS-------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPA--HSDPVSAVHFNRDGSLIVSSSY----D 170 (312)
T ss_dssp CCS-------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE-ECC--CSSCEEEEEECTTSSEEEEEET----T
T ss_pred CCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE-ecC--CCCcEEEEEEcCCCCEEEEEeC----C
Confidence 000 00011112 455445555556799999988764332 221 1111222222 5666655532 2
Q ss_pred cEEEEEEEe
Q 012227 371 TCVCIWELQ 379 (468)
Q Consensus 371 ~~i~Vw~ld 379 (468)
..+.+|.+.
T Consensus 171 ~~i~~wd~~ 179 (312)
T 4ery_A 171 GLCRIWDTA 179 (312)
T ss_dssp SCEEEEETT
T ss_pred CcEEEEECC
Confidence 467888554
No 102
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=88.85 E-value=27 Score=37.08 Aligned_cols=204 Identities=15% Similarity=0.246 Sum_probs=107.9
Q ss_pred eecCceEEEEEcCCceEEEEcCCCCceEecCCCCc---CCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCC
Q 012227 211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSV---KVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNS 286 (468)
Q Consensus 211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~---~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~ 286 (468)
.-.+|-|.+.... -+.++|+.++++..+...+. .........+..|. +.. ++++.. +++..|+..++.
T Consensus 270 ~d~~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-----~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 270 MDSQNRLWIGTFN--DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-----QGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp ECTTSCEEEEESS--CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-----TSC-EEEEESSSCEEEECGGGGS
T ss_pred EcCCCCEEEEeCC--hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-----CcC-EEEEECCCCeEEeCCCccc
Confidence 3346766666543 58999999999887654211 11112233444552 122 455654 568999888777
Q ss_pred ccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCC-----CCCCCC-ceEEEE-CC
Q 012227 287 WTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPT-----PLHLND-HTLAEC-GG 357 (468)
Q Consensus 287 W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~-----p~~~~~-~~l~~~-~G 357 (468)
++.....+....++. . .-.+++. +|.++ ++....+|..||..++.+..+..+. ...... ..+.+- +|
T Consensus 342 ~~~~~~~~~~~~l~~--~-~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 342 FKNIRNIPYKNSLSD--N-VVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp SEEECCCTTSSSCSC--S-SEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred ceEEcCCCCCCCCCC--C-eeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 654432211111100 0 1123333 45654 5555568999999999998763321 011111 233332 67
Q ss_pred e-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 358 R-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 358 ~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
+ |++ +.... .++.++..++.+......... .....+...+...+|.|++... ..++.||+++++
T Consensus 418 ~~lWi-gt~~~------Gl~~~d~~~~~~~~~~~~~~~----l~~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 418 SLVYI-GTHAG------GLSILHRNSGQVENFNQRNSQ----LVNENVYAILPDGEGNLWLGTL----SALVRFNPEQRS 482 (795)
T ss_dssp TEEEE-EETTT------EEEEEETTTCCEEEECTTTSC----CSCSCEEEEEECSSSCEEEEES----SCEEEEETTTTE
T ss_pred CEEEE-EeCcC------ceeEEeCCCCcEEEeecCCCC----cCCCeeEEEEECCCCCEEEEec----CceeEEeCCCCe
Confidence 7 665 32211 466777766666654321110 1111111222334677877432 469999999999
Q ss_pred EEEcc
Q 012227 437 WLKVP 441 (468)
Q Consensus 437 w~~v~ 441 (468)
++.+.
T Consensus 483 ~~~~~ 487 (795)
T 4a2l_A 483 FTTIE 487 (795)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 98875
No 103
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=88.72 E-value=9.9 Score=34.66 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=88.1
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.......+.+||..+++... +.. ... ....+.+.+ ..-.++..+.++.+.+||..++.-.. .
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~--~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~--~ 144 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSN--YVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLK--T 144 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSS--CEEEEEECS----SSSEEEEEETTSCEEEEETTTCCEEE--E
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcC---CCC--CEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCEEEE--E
Confidence 44444444445678899988776442 221 111 122333331 12234444446679999987654211 1
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKN 368 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~ 368 (468)
+.... . .-..+.+ +|.+.+.+.....|..||+.+.+.... +... .......+.+ +|+.++++..
T Consensus 145 ~~~~~-~------~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~--- 212 (312)
T 4ery_A 145 LPAHS-D------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-LIDD-DNPPVSFVKFSPNGKYILAATL--- 212 (312)
T ss_dssp ECCCS-S------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCS-SCCCEEEEEECTTSSEEEEEET---
T ss_pred ecCCC-C------cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-Eecc-CCCceEEEEECCCCCEEEEEcC---
Confidence 11100 0 0112222 566556665666899999988764332 1111 1111122222 5665554432
Q ss_pred CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 369 AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 369 ~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
...+.+|.+... +.+..+...... .. .........++..++. +...+.+.+||+++++..
T Consensus 213 -d~~i~iwd~~~~----~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~s--g~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 213 -DNTLKLWDYSKG----KCLKTYTGHKNE-KY--CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp -TTEEEEEETTTT----EEEEEECSSCCS-SS--CCCEEEECSSSCEEEE--CCTTSCEEEEETTTCCEE
T ss_pred -CCeEEEEECCCC----cEEEEEEecCCc-eE--EEEEEEEeCCCcEEEE--ECCCCEEEEEECCCchhh
Confidence 257888865432 222222110000 00 0011112223443332 234568999999888654
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=88.64 E-value=1.9 Score=45.91 Aligned_cols=205 Identities=10% Similarity=0.052 Sum_probs=93.4
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP 294 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p 294 (468)
|-+++.....+.+.+||..++++..+-......... ..+.+. +....-.++..+.++.+.+||..++.-.......
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V--~~v~~s--p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~ 142 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV--NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID 142 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe--EEEEEC--CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee
Confidence 544555545568999999988754443322222222 233333 2111234444455667999998766321111000
Q ss_pred CCcccCcccccccceEEE---------------CCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEE--
Q 012227 295 SNIKLPVSLNFRSQAVSV---------------DGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAEC-- 355 (468)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~---------------~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~-- 355 (468)
.. +. ....+.+ +|.+.+.+...+.|..||+.+. .+..+. ....+.....-+.+
T Consensus 143 ~~---~~----~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 143 AH---AI----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLEGHSDWVRDVAWSP 214 (753)
T ss_dssp CC---SS----CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE-EECCCSSCEEEEEECC
T ss_pred cC---CC----ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee-eecCCCCcEEEEEecc
Confidence 00 00 0111111 3455555555567888888654 333321 11112222222333
Q ss_pred C---CeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227 356 G---GRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV 432 (468)
Q Consensus 356 ~---G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~ 432 (468)
+ |++.+.+.. ...+.||.+......+....... ....+. +.-.++..++..++.. ...+.+.+||+
T Consensus 215 ~~~~~~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~----~~~~~~-v~~l~~spdg~~l~s~--s~Dg~I~vwd~ 283 (753)
T 3jro_A 215 TVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKE----EKFPDV-LWRASWSLSGNVLALS--GGDNKVTLWKE 283 (753)
T ss_dssp CCSSSEEEEEEES----SSCEEEEEESSSSSCCBCCBSSS----SCCSSC-CCCEEECTTTCCEEEE--CSSSCEECCBC
T ss_pred CCCCCCEEEEEec----CCEEEEecCCCCCCcceeEEecc----CCCCCc-eEEEEEcCCCCEEEEE--cCCCEEEEEec
Confidence 3 666665542 24789998876543332211000 000000 1112233233333322 23567899998
Q ss_pred CC-CcEEEccC
Q 012227 433 MS-REWLKVPG 442 (468)
Q Consensus 433 ~t-~~w~~v~~ 442 (468)
.+ ++|..+..
T Consensus 284 ~~~~~~~~~~~ 294 (753)
T 3jro_A 284 NLEGKWEPAGE 294 (753)
T ss_dssp CSSSCCBCCCC
T ss_pred CCCCCcccccc
Confidence 84 45655543
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=88.61 E-value=9.3 Score=37.00 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=73.9
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC-CC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP-GS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~-~~ 292 (468)
+|-+++.+...+.+.+||..+++....-.. .. .....+.+++ -.++..+.++.+.+||..++.-... ..
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~--~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 251 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIH--HC--EAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTDITLRRV 251 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECC--CC--SCEEEEECCT------TEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcC--CC--CcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCCceeeeE
Confidence 454445555556899999998875432211 11 1123333331 2455445566799999876542110 00
Q ss_pred CCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccE
Q 012227 293 MPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATC 372 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~ 372 (468)
.... ......+..+|...+.+.....|..+|+.+.+.... +.. +......+..+|.+++++.. ...
T Consensus 252 ~~~~-------~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~--~~~~v~~~~~~~~~l~~g~~----dg~ 317 (435)
T 1p22_A 252 LVGH-------RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT-LNG--HKRGIACLQYRDRLVVSGSS----DNT 317 (435)
T ss_dssp ECCC-------SSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE-EEC--CSSCEEEEEEETTEEEEEET----TSC
T ss_pred ecCC-------CCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEE-EcC--CCCcEEEEEeCCCEEEEEeC----CCe
Confidence 0000 001223444666666666667899999988765432 211 11222334456776665542 247
Q ss_pred EEEEEEe
Q 012227 373 VCIWELQ 379 (468)
Q Consensus 373 i~Vw~ld 379 (468)
+.+|.+.
T Consensus 318 i~iwd~~ 324 (435)
T 1p22_A 318 IRLWDIE 324 (435)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8889554
No 106
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=88.53 E-value=11 Score=35.16 Aligned_cols=158 Identities=9% Similarity=0.072 Sum_probs=74.6
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.......+.|||..++++...... ..+.... ..+.+.+ ..-.++..+.++.+.+|+..++.+..+..
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v--~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV--RKVAWSP----CGNYLASASFDATTCIWKKNQDDFECVTT 100 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCE--EEEEECT----TSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcE--EEEEECC----CCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence 444444444455788888887765422111 1111122 2333331 12234444446679999987766543322
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK 367 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~ 367 (468)
+..... .-..+.+ +|.+.+.++....|..+|+.++ ....+.. ...+.....-+.. +|++++.+..
T Consensus 101 ~~~h~~-------~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~-- 170 (345)
T 3fm0_A 101 LEGHEN-------EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHPSQELLASASY-- 170 (345)
T ss_dssp ECCCSS-------CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-ECCCCSCEEEEEECSSSSCEEEEET--
T ss_pred ccCCCC-------CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-ecCcCCCeEEEEECCCCCEEEEEeC--
Confidence 111100 0112222 4665555655667888998764 2332211 1111111222222 5665554432
Q ss_pred CCccEEEEEEEecCCCCeEEEEee
Q 012227 368 NAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
...+.+|.++. ..|..+..+
T Consensus 171 --d~~i~~w~~~~--~~~~~~~~~ 190 (345)
T 3fm0_A 171 --DDTVKLYREEE--DDWVCCATL 190 (345)
T ss_dssp --TSCEEEEEEET--TEEEEEEEE
T ss_pred --CCcEEEEEecC--CCEEEEEEe
Confidence 24688997664 566655444
No 107
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.34 E-value=18 Score=34.47 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=89.4
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM 293 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~ 293 (468)
+|-+++.......+.+||..+++....-.. ..... ..+.+++ ..++..+.++.+.+||..+..-... .+
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v--~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~-~~ 213 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAG--HQARV--GCLSWNR------HVLSSGSRSGAIHHHDVRIANHQIG-TL 213 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCE--EEEEEET------TEEEEEETTSEEEEEETTSSSCEEE-EE
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecC--CCCce--EEEEECC------CEEEEEcCCCCEEEEecccCcceee-EE
Confidence 554444444456799999988765432211 11111 2233342 2444444566799999874321100 00
Q ss_pred CCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCC
Q 012227 294 PSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNA 369 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~ 369 (468)
... ...-.++.+ +|.+.+.+.....|..||+.+..-... +... ...-..+... ++.|++.+. ...
T Consensus 214 ~~~-------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~-~~~v~~~~~~p~~~~ll~~~~--gs~ 282 (401)
T 4aez_A 214 QGH-------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNH-NAAVKAVAWCPWQSNLLATGG--GTM 282 (401)
T ss_dssp ECC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCC-SSCCCEEEECTTSTTEEEEEC--CTT
T ss_pred cCC-------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCC-cceEEEEEECCCCCCEEEEec--CCC
Confidence 000 001112222 566666666667899999988654432 2111 1111223332 334544432 012
Q ss_pred ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
...+.+|.+.. .+ .+..+... ....-.++. .+..++. ..+...+.+.+||+.+++...+
T Consensus 283 d~~i~i~d~~~--~~--~~~~~~~~-------~~v~~~~~s~~~~~l~~-~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 283 DKQIHFWNAAT--GA--RVNTVDAG-------SQVTSLIWSPHSKEIMS-THGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp TCEEEEEETTT--CC--EEEEEECS-------SCEEEEEECSSSSEEEE-EECTTTCEEEEEEEETTEEEEE
T ss_pred CCEEEEEECCC--CC--EEEEEeCC-------CcEEEEEECCCCCeEEE-EeecCCCcEEEEecCCccceeE
Confidence 35788885543 22 22222110 001112222 3444433 2233457888999888766654
No 108
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=88.31 E-value=13 Score=34.51 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=77.6
Q ss_pred eeecCceEEEEEc-CCceEEEEcCCCCceEecCCCCc-----CCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeC
Q 012227 210 VASAGGLVCFLDI-GHRNFYVCNPLTQSFKELPARSV-----KVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDS 282 (468)
Q Consensus 210 ~~s~~GLl~~~~~-~~~~~~V~NP~T~~~~~LP~~~~-----~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s 282 (468)
+...+|.+++.+. ...++.++|+.......+..... ........++.+++ ....+++... ...+.+|+.
T Consensus 150 ~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~----~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 150 VEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP----HLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp ECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEET----TTTEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC----CCCEEEEEECCCCEEEEEEC
Confidence 3334788888885 56789999965443333432110 00111234555552 1135665553 345999998
Q ss_pred CCCCccCCCCCCCCcccCcccccc-cceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEE-ECCeE
Q 012227 283 LRNSWTRPGSMPSNIKLPVSLNFR-SQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAE-CGGRI 359 (468)
Q Consensus 283 ~t~~W~~~~~~p~~~~~~~~~~~~-~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~-~~G~L 359 (468)
.+++....-..+.....+....+. ...+..+|.+|+.......|..+|..+++....--+.......+ .++. -+|.|
T Consensus 226 ~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l 305 (329)
T 3fvz_A 226 DTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV 305 (329)
T ss_dssp TTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred CCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence 866653221111000001100000 11111233333332334578999988887665422222222222 2333 27788
Q ss_pred EEEEEEeeCCccEEEEEEEec
Q 012227 360 MLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 360 ~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
|+.... ...|.+|.++.
T Consensus 306 yvad~~----~~~I~~~~~~~ 322 (329)
T 3fvz_A 306 YIGDAH----TNTVWKFTLTE 322 (329)
T ss_dssp EEEESS----SCCEEEEEEEE
T ss_pred EEEECC----CCEEEEEeCCc
Confidence 876532 24666676654
No 109
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=87.96 E-value=17 Score=33.72 Aligned_cols=73 Identities=7% Similarity=-0.026 Sum_probs=41.2
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
+|...+.+.....|..||+.+.+.... +.... ..-..+.- -+|++++++ . ...+.+|.++...+.|..+..+
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~--~---d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADADKKMAVAT-LASET-LPLLAVTFITESSLVAAG--H---DCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGGGTTEEEE-EECSS-CCEEEEEEEETTEEEEEE--T---TSSCEEEEEETTTTEEEECCCC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceeEE-EccCC-CCeEEEEEecCCCEEEEE--e---CCeEEEEEccCcCceEEEeecc
Confidence 555555555556899999977654332 21111 01112222 377766544 2 2467899888755778776555
Q ss_pred C
Q 012227 392 P 392 (468)
Q Consensus 392 p 392 (468)
.
T Consensus 286 ~ 286 (372)
T 1k8k_C 286 D 286 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.89 E-value=14 Score=34.87 Aligned_cols=197 Identities=7% Similarity=-0.025 Sum_probs=81.1
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|.++.... ...+.|||..+++..................+.+.+ +.-.++..+.++.+.+||..++.-...
T Consensus 104 ~d~~~l~~s~-dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp----dg~~l~sgs~dg~v~iwd~~~~~~~~~-- 176 (357)
T 4g56_B 104 SEKGILVASD-SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS----DGTQAVSGGKDFSVKVWDLSQKAVLKS-- 176 (357)
T ss_dssp TTTEEEEEET-TSCEEEC--------CCCCEEECCCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred CCCCEEEEEC-CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC----CCCEEEEEeCCCeEEEEECCCCcEEEE--
Confidence 3454444433 457999999887755433321111111122333331 112344444456799999887643211
Q ss_pred CCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE---CCeEEEEEEEe
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC---GGRIMLVGLLT 366 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~~~~ 366 (468)
+.... ..-..+.+ ++ .+++.+.....|..+|+.+.+.... ...........-+.. ++.+++++..
T Consensus 177 ~~~h~-------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~~la~g~~- 247 (357)
T 4g56_B 177 YNAHS-------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-IDFCASDTIPTSVTWHPEKDDTFACGDE- 247 (357)
T ss_dssp ECCCS-------SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CCCTTCCSCEEEEEECTTSTTEEEEEES-
T ss_pred EcCCC-------CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-eeeccccccccchhhhhcccceEEEeec-
Confidence 10000 01112222 23 2344444456788899887653221 111111111222232 3556554432
Q ss_pred eCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 367 KNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
...+.+|.+...+.. ..+.. ... .+.-.++. .++.+++. .+ ..+.+.+||+++++....
T Consensus 248 ---d~~i~~wd~~~~~~~----~~~~~-----~~~-~v~~l~~sp~~~~~las-gs-~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 248 ---TGNVSLVNIKNPDSA----QTSAV-----HSQ-NITGLAYSYHSSPFLAS-IS-EDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp ---SSCEEEEESSCGGGC----EEECC-----CSS-CEEEEEECSSSSCCEEE-EE-TTSCEEEECTTSCEEEEE
T ss_pred ---ccceeEEECCCCcEe----EEEec-----cce-eEEEEEEcCCCCCEEEE-Ee-CCCEEEEEECCCCcEeEE
Confidence 246788855432111 11110 000 01111222 33344332 22 346789999998876654
No 111
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=87.83 E-value=30 Score=36.53 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=106.6
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCC-----cCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARS-----VKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNS 286 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~-----~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~ 286 (468)
.+|-|.+.... .-+..+|+.++.+..+...+ .........++..|. +..+ +++. .+++..|+..++.
T Consensus 322 ~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-----~g~l-Wigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 322 SFNNIWIGTWG-GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-----QGKL-WIGTDGGGINVFENGKRV 394 (781)
T ss_dssp SSCCEEEEEBS-SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-----TSCE-EEEEBSSCEEEEETTEEE
T ss_pred CCCCEEEEecC-CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-----CCCE-EEEeCCCcEEEEECCCCe
Confidence 45655555422 25888899888877654211 111111233444441 1233 4555 4569999998877
Q ss_pred ccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEE
Q 012227 287 WTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLV 362 (468)
Q Consensus 287 W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv 362 (468)
++.... +.. ++. ..-.+++. +|.+++ +.....+..||..++++..+..+ ...... ..+.+- +|.|++.
T Consensus 395 ~~~~~~-~~~--~~~---~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~g~lwig 466 (781)
T 3v9f_A 395 AIYNKE-NRE--LLS---NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELE-KNELLDVRVFYEDKNKKIWIG 466 (781)
T ss_dssp EECC--------CCC---SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCST-TTCCCCEEEEEECTTSEEEEE
T ss_pred EEEccC-CCC--CCC---cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccC-CCCCCeEEEEEECCCCCEEEE
Confidence 765421 110 100 01123333 566655 54445899999999999876432 111111 233333 6787764
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
.. . .++.++..+++|+.....+.. ......+.-.+...+|.|++... ...++.||+++++++.+.
T Consensus 467 t~--~------Gl~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~~~ 531 (781)
T 3v9f_A 467 TH--A------GVFVIDLASKKVIHHYDTSNS---QLLENFVRSIAQDSEGRFWIGTF---GGGVGIYTPDMQLVRKFN 531 (781)
T ss_dssp ET--T------EEEEEESSSSSCCEEECTTTS---SCSCSCEEEEEECTTCCEEEEES---SSCEEEECTTCCEEEEEC
T ss_pred EC--C------ceEEEeCCCCeEEecccCccc---ccccceeEEEEEcCCCCEEEEEc---CCCEEEEeCCCCeEEEcc
Confidence 32 1 467778777788776543211 01111122233446778877542 246999999999988764
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=87.66 E-value=19 Score=34.13 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=50.6
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCC
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPT 343 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~ 343 (468)
.++..+.++.+.+|+..++.......-+.. .+.. ....-..+.+ +| .+.+.+.....|..+|+.+++.... +..
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~-~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~ 172 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVI-TLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT-LGP 172 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSE-EEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE-ECT
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceE-EecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE-Eec
Confidence 444444466799999987754321100000 0000 0001112222 33 3555555556799999998876543 311
Q ss_pred CCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEe
Q 012227 344 PLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 344 p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld 379 (468)
..+.....-+.+ +|++++++.. ...+.||.+.
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 206 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPR 206 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEET----TSEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEec----CCcEEEEeCC
Confidence 111222222333 6666655532 2578888544
No 113
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=87.36 E-value=9.9 Score=38.57 Aligned_cols=203 Identities=8% Similarity=0.019 Sum_probs=97.7
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEe-cCCCCc--CC----cceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKE-LPARSV--KV----WSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW 287 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~--~~----~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W 287 (468)
.+|++.......+.|+|..|.+... ++.... .. ......++.+. ..+.+.++....++.+.++|..+..-
T Consensus 238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s---~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS---HEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC---SSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC---CCCCEEEEEECCCCeEEEEEecCCCc
Confidence 3555555445578888888876543 332110 00 00011223332 12234444444455688888776431
Q ss_pred cCCCCCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECCCCeEEEeecCC---CCCCCCceEEEEC-CeEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVTGVWKQFIIPT---PLHLNDHTLAECG-GRIM 360 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~~~w~~i~~P~---p~~~~~~~l~~~~-G~L~ 360 (468)
..+..++.. .+.. .+.+ +|. +|+.....+.|.++|+.+++.... ++. |.......+..-+ |.++
T Consensus 315 l~~~~i~~~-------~~~~-~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~-i~~g~~ph~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 315 LTVTSIGAA-------PFLH-DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL-VDVGKTPHPGRGANFVHPKYGPVW 385 (543)
T ss_dssp CEEEEEECC-------SSCC-CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSBCCTTCEEEEETTTEEEE
T ss_pred ceeEEeccC-------cCcc-CceECCCCCEEEEEecCCCeEEEEECCCCeEEEe-eccCCCCCCCCCcccCCCCCccEE
Confidence 110011100 0011 1222 565 455554456899999999876543 222 1111122222223 6666
Q ss_pred EEEEEeeCCccEEEEEEEecCC---CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEee-eC---CCCeEEEEECC
Q 012227 361 LVGLLTKNAATCVCIWELQKMT---LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR-SR---QMNRLVTYNVM 433 (468)
Q Consensus 361 lv~~~~~~~~~~i~Vw~ld~~~---~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~-~~---~~~~l~~YD~~ 433 (468)
+.+.. ...++.||..+..+ ..|+.+..++..--.-+ .+..--++..||+... .. ....|.+||.+
T Consensus 386 ~s~~~---~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~-----~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 386 STSHL---GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL-----FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEBS---SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-----CEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred EeccC---CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce-----EEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 54321 23578999777632 34988887753210000 0111125567765321 11 13589999999
Q ss_pred CCcE
Q 012227 434 SREW 437 (468)
Q Consensus 434 t~~w 437 (468)
+.+.
T Consensus 458 ~~~~ 461 (543)
T 1nir_A 458 NLDA 461 (543)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8863
No 114
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=87.21 E-value=20 Score=33.68 Aligned_cols=110 Identities=6% Similarity=-0.013 Sum_probs=54.9
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+.+|-.++.......+.+||..+++....-. .+......+. +. ..+...++..+.++.+.+||..+++-...-
T Consensus 136 spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~V~~~~--~~---~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 208 (344)
T 4gqb_B 136 LSSGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVA--AS---PHKDSVFLSCSEDNRILLWDTRCPKPASQI 208 (344)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEE--EC---SSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--CcCCceEEEE--ec---CCCCCceeeeccccccccccccccceeeee
Confidence 3456555555555679999998887653222 1111222233 32 112234444445677999998876532110
Q ss_pred CCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCe
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
..... .....++.+ ++.+.+.+.....|..+|+.+.+
T Consensus 209 ~~~~~-------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 209 GCSAP-------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp C-----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred eccee-------eccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 00000 001112222 45555666566678889998764
No 115
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=87.08 E-value=11 Score=34.75 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=74.5
Q ss_pred EEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCC----CeEEEEECCCCeEEEe
Q 012227 267 KILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDP----EGIVSYNMVTGVWKQF 339 (468)
Q Consensus 267 kVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~----~~i~~fD~~~~~w~~i 339 (468)
++++++. .+.+.+||..++..+........ ...++.. +|.+|+..... ..|..||+.++....+
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKA---------NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSS---------SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCC---------CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence 4665544 34589999888776543210000 1123333 68888776543 4799999998876643
Q ss_pred ecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEE
Q 012227 340 IIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLML 417 (468)
Q Consensus 340 ~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~ 417 (468)
.........-..++. -+|+|++.............||+++..+.+...+..- ... ..-.++. +++.||+
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~i~~~~dg~~l~v 198 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------ISV--ANGIALSTDEKVLWV 198 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------ESS--EEEEEECTTSSEEEE
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-------CCc--ccceEECCCCCEEEE
Confidence 111111111112233 2788887543211111235789988765555443210 000 0112233 3345666
Q ss_pred EeeeCCCCeEEEEECCC
Q 012227 418 SLRSRQMNRLVTYNVMS 434 (468)
Q Consensus 418 ~~~~~~~~~l~~YD~~t 434 (468)
... ....+..||+++
T Consensus 199 ~~~--~~~~i~~~d~~~ 213 (333)
T 2dg1_A 199 TET--TANRLHRIALED 213 (333)
T ss_dssp EEG--GGTEEEEEEECT
T ss_pred EeC--CCCeEEEEEecC
Confidence 432 235788888853
No 116
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=86.94 E-value=5.9 Score=38.54 Aligned_cols=112 Identities=12% Similarity=-0.026 Sum_probs=55.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM 293 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~ 293 (468)
++-+++.+...+.+.|||..+++...+-....+......+. +. +. +.-.++..+.++.+.+||..++.-......
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~--f~--p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLK--FN--PL-NTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEE--EC--SS-CTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEE--Ee--CC-CCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 33333333344578899988776543222111122222233 33 11 223455555567799999876654322111
Q ss_pred CCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe
Q 012227 294 PSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
... .. ....-...-+|.+.+.+.....|..+|+.+..
T Consensus 206 ~~~-~~----~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 206 DTI-NI----WFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp SSC-SC----CCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred CCC-Cc----cEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 000 00 00111112256666666666788899987654
No 117
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=86.93 E-value=21 Score=33.82 Aligned_cols=154 Identities=9% Similarity=0.053 Sum_probs=73.1
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCC--------------CCCCCeEEEEEEe-cCcE
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGN--------------STSSGYKILWVGC-DGEY 277 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~--------------~~~~~ykVv~v~~-~~~v 277 (468)
+|-.++.......+.+||..+++....-.. .........+.+..+.. ..+.+.+.++.+. ++.+
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI 271 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE
Confidence 454444444456799999988775533221 11111222222221100 0112334444444 5569
Q ss_pred EEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCCCceE
Q 012227 278 EIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 278 ~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~~~~l 352 (468)
.+||..++.-... ...... .....+.+ +|. +.+.+.....|..||+.+.. ...+.... ...-..+
T Consensus 272 ~i~d~~~~~~~~~--~~~~~~------~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~ 341 (420)
T 3vl1_A 272 TVHNVFSKEQTIQ--LPSKFT------CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNV 341 (420)
T ss_dssp EEEETTTCCEEEE--ECCTTS------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEE
T ss_pred EEEECCCCceeEE--cccccC------CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEE
Confidence 9999876542111 000000 01112223 344 45555555789999998753 22222111 1111233
Q ss_pred EEECCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 353 AECGGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 353 ~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
...+|++++.+. ....+.+|.+...
T Consensus 342 ~~~~~~~l~s~~----~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 342 YFAAGALFVSSG----FDTSIKLDIISDP 366 (420)
T ss_dssp EEETTEEEEEET----TTEEEEEEEECCT
T ss_pred EeCCCCEEEEec----CCccEEEEeccCC
Confidence 445787665542 2368999988763
No 118
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.77 E-value=18 Score=32.81 Aligned_cols=192 Identities=11% Similarity=0.102 Sum_probs=88.1
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-.++.......+.+||..+++............. ...+.+.+ +.-.++..+.++.+.+||..++.-...
T Consensus 107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--i~~~~~~~----~~~~l~~~~~dg~v~~~d~~~~~~~~~-- 178 (337)
T 1gxr_A 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--CYALAISP----DSKVCFSCCSDGNIAVWDLHNQTLVRQ-- 178 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC--EEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc--eEEEEECC----CCCEEEEEeCCCcEEEEeCCCCceeee--
Confidence 3454444444446799999988774332221111111 22333331 122344444456799999887643211
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNA 369 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~ 369 (468)
+.... ..-..+.+ +|...+.+.....|..||+.+.+-... ..... ....+... +|++++++..
T Consensus 179 ~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~--~v~~~~~s~~~~~l~~~~~---- 244 (337)
T 1gxr_A 179 FQGHT-------DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTS--QIFSLGYCPTGEWLAVGME---- 244 (337)
T ss_dssp ECCCS-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSS--CEEEEEECTTSSEEEEEET----
T ss_pred eeccc-------CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ecCCC--ceEEEEECCCCCEEEEEcC----
Confidence 11000 01112223 565555665667899999988765432 22111 11122221 5666655532
Q ss_pred ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
...+.+|.++.. + .. .+.. ..+ ...-..+..++..++.. ...+.+.+||+++++...
T Consensus 245 ~~~i~~~~~~~~--~--~~-~~~~-----~~~-~v~~~~~~~~~~~l~~~--~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 245 SSNVEVLHVNKP--D--KY-QLHL-----HES-CVLSLKFAYCGKWFVST--GKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp TSCEEEEETTSS--C--EE-EECC-----CSS-CEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEE
T ss_pred CCcEEEEECCCC--C--eE-EEcC-----Ccc-ceeEEEECCCCCEEEEe--cCCCcEEEEECCCCeEEE
Confidence 245778865432 1 11 1110 000 01112223233333322 235689999998886553
No 119
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=86.52 E-value=29 Score=35.57 Aligned_cols=210 Identities=11% Similarity=0.048 Sum_probs=99.3
Q ss_pred Cce-EEEEEcCCceEEEEcCC--C-CceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec----------CcEEE
Q 012227 214 GGL-VCFLDIGHRNFYVCNPL--T-QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------GEYEI 279 (468)
Q Consensus 214 ~GL-l~~~~~~~~~~~V~NP~--T-~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------~~v~v 279 (468)
+.. |.+......+++++|.- + ++.+.|...+..........+.+.++ + -+|+....+ ..+.+
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD---g-~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE---R-GEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT---T-TEEEEEEEEECSSSTTCEEEEEEE
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC---C-CEEEEEEecccCCCCCCceeEEEE
Confidence 445 56655445679999987 4 77676665321000111122333311 1 234444333 24777
Q ss_pred EeCCC------CCccCCC-CCCCCcccCcccccccceEEECC-EEEEEEcCC-------CeEEEEECC-CC---eEEEee
Q 012227 280 YDSLR------NSWTRPG-SMPSNIKLPVSLNFRSQAVSVDG-ILYFMRSDP-------EGIVSYNMV-TG---VWKQFI 340 (468)
Q Consensus 280 y~s~t------~~W~~~~-~~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~~~-------~~i~~fD~~-~~---~w~~i~ 340 (468)
++..+ +.-+.+. .-.. ........-+| .|++..... ..|..+|+. ++ ....+.
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHR--------FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSS--------EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EECCCCccccCCceeEEEecCCC--------cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 88776 5544332 1100 00111222355 455554322 368889998 56 444431
Q ss_pred cCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEe
Q 012227 341 IPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL 419 (468)
Q Consensus 341 ~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~ 419 (468)
. . .......+.-. +|+|+++.. . .....||.++..+++++.+....................+..++.+++..
T Consensus 238 ~-~-~~~~~~~~~~spdg~l~~~~~--~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 238 G-G-PEEAIAQAEWAPDGSLIVATD--R--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp E-E-TTBCEEEEEECTTSCEEEEEC--T--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred C-C-CCceEcceEECCCCeEEEEEC--C--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence 1 1 01111122222 788765542 1 12457888887667777654322111000000000112233345555544
Q ss_pred eeCCCCeEEEEECCCCcEEEccC
Q 012227 420 RSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 420 ~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
.. ....|+.+|+++++.+.+..
T Consensus 312 ~~-~~~~l~~~d~~~~~~~~l~~ 333 (662)
T 3azo_A 312 GK-GAAVLGILDPESGELVDAAG 333 (662)
T ss_dssp BS-SSCEEEEEETTTTEEEECCS
T ss_pred Ec-CccEEEEEECCCCcEEEecC
Confidence 33 45678888999888887753
No 120
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=86.44 E-value=10 Score=34.68 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=59.9
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
+|.+||.......|..||+.++....+..+.. -..++.. +|+|++.. . . .|+.++..+++++.+...
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~----~~~i~~~~dG~l~v~~--~----~--~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAP----VSSVALRQSGGYVATI--G----T--KFCALNWKEQSAVVLATV 91 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSSC----EEEEEEBTTSSEEEEE--T----T--EEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCCc----eEEEEECCCCCEEEEE--C----C--eEEEEECCCCcEEEEEec
Confidence 58999998877889999999887765543321 1223332 77865542 1 2 466667766777766554
Q ss_pred ChhhhhcccCcceEEEEEecCCEEEEEeeeC---------CCCeEEEEECCC
Q 012227 392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---------QMNRLVTYNVMS 434 (468)
Q Consensus 392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---------~~~~l~~YD~~t 434 (468)
+..... ....-..+..+|.+|+..... ....++.||.+.
T Consensus 92 ~~~~~~----~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 92 DNDKKN----NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp CTTCSS----EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred CCCCCC----CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 321100 001112334456677743221 234688888764
No 121
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=86.26 E-value=19 Score=33.28 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--C--CeEEEEEEEeeCCccEEEEEEEecC----CCC
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--G--GRIMLVGLLTKNAATCVCIWELQKM----TLL 384 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~--G~L~lv~~~~~~~~~~i~Vw~ld~~----~~~ 384 (468)
+|.+.+.++....|..+|..++.+..+.. ...+.....-+.. + +.+ ++.+.. ..++.||.+... ...
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~-l~s~s~---D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAV-LNGHEGTVWSSDFDKTEGVFR-LCSGSD---DSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCSSSSCE-EEEEET---TSCEEEEEEEEECTTSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEE-ccCCCCcEEEEEecCCCCeeE-EEEEeC---CCeEEEEEecCCCccccce
Confidence 45555555555678888888776654421 1111111222222 2 333 333322 257899988643 235
Q ss_pred eEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 385 WKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 385 W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
|..+..++.... ..+.-.++..++.|+ .. + ..+.+.+||..+++|+.+
T Consensus 239 ~~~~~~~~~~h~-----~~v~~v~~s~~~~l~-s~-~-~dg~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 239 WVCEAILPDVHK-----RQVYNVAWGFNGLIA-SV-G-ADGVLAVYEEVDGEWKVF 286 (330)
T ss_dssp EEEEEECCSCCS-----SCEEEEEECTTSCEE-EE-E-TTSCEEEEEEETTEEEEE
T ss_pred eEEeeecccccc-----cceEEEEEcCCCEEE-EE-e-CCCEEEEEEcCCCceEEE
Confidence 665555432110 011111223445443 22 2 356788999988887654
No 122
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=86.03 E-value=21 Score=32.81 Aligned_cols=204 Identities=6% Similarity=-0.024 Sum_probs=90.2
Q ss_pred CceEEEEEcC------CceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCC
Q 012227 214 GGLVCFLDIG------HRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRN 285 (468)
Q Consensus 214 ~GLl~~~~~~------~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~ 285 (468)
++.+++.... ...++++|+.|++... ++.. .. ...+.+..| + -++++... ++.+.+||..++
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~---~~~~~~s~d-----g-~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LK---PFGATINNT-----T-QTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SC---CCSEEEETT-----T-TEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CC---cceEEECCC-----C-CEEEEEecCCCEEEEEeCCCC
Confidence 3455555432 4579999999887543 2221 11 112333222 1 23444443 356899998876
Q ss_pred CccCCCCCCCCcccCcccccccceEEE--CC-EEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEE
Q 012227 286 SWTRPGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIM 360 (468)
Q Consensus 286 ~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~ 360 (468)
+-...-..+...............+.+ +| .+|+... ....|..+|+.+.+.... ++.... ....+... +|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~-~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA-IQNTGK-MSTGLALDSEGKRL 199 (353)
T ss_dssp CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE-ECCCCT-TCCCCEEETTTTEE
T ss_pred eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE-ecCCCC-ccceEEECCCCCEE
Confidence 532110111000000000000112333 44 5676663 346799999998876543 331111 11223332 55543
Q ss_pred EEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 361 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 361 lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
++... ...+.+| |..+.+-......+..... .....+....+++.+|+.. ...+.+.+||+++++....
T Consensus 200 ~~~~~----~~~i~~~--d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 200 YTTNA----DGELITI--DTADNKILSRKKLLDDGKE---HFFINISLDTARQRAFITD--SKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp EEECT----TSEEEEE--ETTTTEEEEEEECCCSSSC---CCEEEEEEETTTTEEEEEE--SSSSEEEEEETTTCCEEEE
T ss_pred EEEcC----CCeEEEE--ECCCCeEEEEEEcCCCCCC---cccceEEECCCCCEEEEEe--CCCCEEEEEECCCCcEEEE
Confidence 33321 2344444 5433322111122110000 0000122222566776643 3357899999988876543
No 123
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.02 E-value=12 Score=39.55 Aligned_cols=137 Identities=14% Similarity=0.034 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcc
Q 012227 224 HRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVS 302 (468)
Q Consensus 224 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~ 302 (468)
.+.+.|||..+++... +... ......+.+..+ .-.++..+.++.+.+|+..++..... +.....
T Consensus 34 ~g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~------~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~---- 98 (814)
T 3mkq_A 34 SGRVEIWNYETQVEVRSIQVT---ETPVRAGKFIAR------KNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPD---- 98 (814)
T ss_dssp TSEEEEEETTTTEEEEEEECC---SSCEEEEEEEGG------GTEEEEEETTSEEEEEETTTCCEEEE--EECCSS----
T ss_pred CCEEEEEECCCCceEEEEecC---CCcEEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEE--EecCCC----
Confidence 4568888887776543 2221 112223333322 12344444456799999887764321 000000
Q ss_pred cccccceEEE--CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCC-ceEEEE--CCeEEEEEEEeeCCccEEEEE
Q 012227 303 LNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLND-HTLAEC--GGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 303 ~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~-~~l~~~--~G~L~lv~~~~~~~~~~i~Vw 376 (468)
.-..+.+ +|...+.+.....|..+|+.++ ..... ... +... ..+.-. +|.+++++.. ...+.+|
T Consensus 99 ---~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~--~~~~v~~~~~~p~~~~~l~~~~~----dg~v~vw 168 (814)
T 3mkq_A 99 ---YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEG--HEHFVMCVAFNPKDPSTFASGCL----DRTVKVW 168 (814)
T ss_dssp ---CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-EEC--CSSCEEEEEEETTEEEEEEEEET----TSEEEEE
T ss_pred ---CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-EcC--CCCcEEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 0111222 4544445555568999999876 33332 111 1111 122222 4555554432 2578888
Q ss_pred EEecCCCCe
Q 012227 377 ELQKMTLLW 385 (468)
Q Consensus 377 ~ld~~~~~W 385 (468)
.+......+
T Consensus 169 d~~~~~~~~ 177 (814)
T 3mkq_A 169 SLGQSTPNF 177 (814)
T ss_dssp ETTCSSCSE
T ss_pred ECCCCccee
Confidence 665433333
No 124
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=85.98 E-value=34 Score=35.31 Aligned_cols=186 Identities=10% Similarity=0.100 Sum_probs=98.7
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~ 288 (468)
+...+|.|+..+....+++.+++-......+-..... ...|+.+| .. .-+||+.... ..+++++.....=+
T Consensus 44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~----~P~GlAvD--~~--~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD----YPEGMAVD--WL--GKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----CCCEEEEE--TT--TTEEEEEETTTTEEEEEETTSTTCE
T ss_pred EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC----CcceEEEE--eC--CCEEEEEECCCCEEEEEecCCCcEE
Confidence 5556889999888777899998876554443332211 12345555 21 2467766543 34888887543211
Q ss_pred CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIML 361 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~l 361 (468)
.+.. .... ...++++ +|.|||.... ...|..++++...-..+ .. .... ..|+.- +++||+
T Consensus 116 ~l~~--~~l~-------~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~~---~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 116 VLVW--KDLD-------SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-VP---NVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EEEC--SSCC-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-EC---SCSSEEEEEEETTTTEEEE
T ss_pred EEEe--CCCC-------CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE-EC---CCCCcceEEEccccCEEEE
Confidence 1110 1111 1223444 6999998743 56899999987655444 21 1111 233333 689998
Q ss_pred EEEEeeCCccEEEEEEEecCC-CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 362 VGLLTKNAATCVCIWELQKMT-LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~~~-~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
+... .. .|++++... .. +.+... + ..+......++.||+.. ...+.|..+|..++
T Consensus 183 aD~~----~~--~I~~~d~dG~~~-~v~~~~-------l---~~P~glav~~~~ly~tD--~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 183 TDLD----TN--LIESSNMLGLNR-EVIADD-------L---PHPFGLTQYQDYIYWTD--WSRRSIERANKTSG 238 (628)
T ss_dssp EETT----TT--EEEEEETTSCSC-EEEEEC-------C---SCEEEEEEETTEEEEEE--TTTTEEEEEETTTC
T ss_pred EECC----CC--EEEEEcCCCCce-EEeecc-------C---CCceEEEEECCEEEEec--CCCCEEEEEECCCC
Confidence 7632 22 456666432 22 222110 0 01222222457787642 23567888887555
No 125
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=85.97 E-value=1.8 Score=45.76 Aligned_cols=196 Identities=10% Similarity=0.076 Sum_probs=92.1
Q ss_pred eeecCceEEEEEcCCceEEEEcCCC----Cce-EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLT----QSF-KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSL 283 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T----~~~-~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~ 283 (468)
+...+|.|++.+....+++++++.+ ... ..+.. ... ...++.+| .. ..+||+... ...+.+++..
T Consensus 413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~----~P~glavD--~~--~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 413 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ----APDGLAVD--WI--HSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC------CCCEECC--CS--SSBCEECCTTTSCEEEEBSS
T ss_pred cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCC----CcceEEEE--ee--CCcEEEEeccCCeEEEEecC
Confidence 4445778888776666788888765 111 11111 010 11233333 11 134554432 2347788766
Q ss_pred CCCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CC
Q 012227 284 RNSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GG 357 (468)
Q Consensus 284 t~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G 357 (468)
...-+.+.. .... ...++.+ +|.|||..... ..|..+++....-..+ +.... ..-..|+.. ++
T Consensus 484 g~~~~~l~~--~~~~-------~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l-~~~~l-~~PnGlavd~~~~ 552 (699)
T 1n7d_A 484 GVKRKTLFR--EQGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSG 552 (699)
T ss_dssp SCCEEEECC--CSSC-------CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE-SCSSC-SSCCCEEECTTTC
T ss_pred CCceEEEEe--CCCC-------CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE-EeCCC-CCccEEEEeccCC
Confidence 443222111 0111 1123334 68899976533 5788888865433332 11111 111234443 68
Q ss_pred eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
+||++... .. .|++++.....-..+...+..+. .+......++.||+.. ...+.|.++|..+++.
T Consensus 553 ~LY~aD~~----~~--~I~~~d~dG~~~~~~~~~~~~~~-------~P~glavd~~~lywtd--~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 553 RLYWVDSK----LH--SISSIDVNGGNRKTILEDEKRLA-------HPFSLAVFEDKVFWTD--IINEAIFSANRLTGSD 617 (699)
T ss_dssp CEEEEETT----TT--EEEEECSSSSCCEEECCCSSSCS-------SCCCCEEETTEEEEEC--STTTCEEEEETTTEEE
T ss_pred EEEEEecC----CC--eEEEEccCCCceEEEEecCCcCC-------CceEeEEECCEEEEEe--CCCCeEEEEEccCCCc
Confidence 89887632 23 45555653322222221111100 0111122356777643 3457899999887765
Q ss_pred EEc
Q 012227 438 LKV 440 (468)
Q Consensus 438 ~~v 440 (468)
..+
T Consensus 618 ~~~ 620 (699)
T 1n7d_A 618 VNL 620 (699)
T ss_dssp EEC
T ss_pred eEE
Confidence 443
No 126
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=85.92 E-value=10 Score=35.00 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=34.3
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW 287 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W 287 (468)
+|-+++.......+.|||..+++... +.. .... ...+.+.+ +.-.++..+.++.+.+||..++.-
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~--v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDG---HTGT--IWSIDVDC----FTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTCCEEEEECC---CSSC--EEEEEECT----TSSEEEEEETTTEEEEEETTTCCE
T ss_pred CCCEEEEEeCCCEEEEEeCCCchhhhhhhh---cCCc--EEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcE
Confidence 44334444344578899988776543 222 1111 22333331 122444445566799999877653
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=85.90 E-value=27 Score=35.23 Aligned_cols=191 Identities=11% Similarity=0.047 Sum_probs=92.6
Q ss_pred CceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeC--CCCCccCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDS--LRNSWTRP 290 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s--~t~~W~~~ 290 (468)
+|.+++.......+.|+|+.|++.. .++.. . . ..++.+++ +.-.+++.+.++.+.+||. .+++- +
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-~---~--~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~--~ 215 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-Y---A--VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTK--V 215 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECS-T---T--EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEE--E
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecC-c---c--cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcE--E
Confidence 5666666666668999999998764 33321 1 1 12333332 2235565666667999998 54331 1
Q ss_pred CCCCCCcccCcccccccceEEE------CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCC---C-----CC-C-ceEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV------DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL---H-----LN-D-HTLA 353 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~------~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~---~-----~~-~-~~l~ 353 (468)
..++... ....+.+ +| .+|+.......|..+|..+.+-... ++... . .. . ..++
T Consensus 216 ~~i~~g~--------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~-i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 216 AEIKIGI--------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-VSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp EEEECCS--------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-EECCEECSSSCCEESCCCEEEEE
T ss_pred EEEecCC--------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee-ecccCcccCccccccCCceEEEE
Confidence 1111110 1112222 45 4566554456899999988765433 22210 0 00 1 1222
Q ss_pred EE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEE
Q 012227 354 EC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYN 431 (468)
Q Consensus 354 ~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD 431 (468)
.. +|..+++... ....+.+|.++..+.. .+..++...+ . .-..+. .+..+|+.. ...+.+.++|
T Consensus 287 ~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l--~~~~i~~~~~---~----~~~~~spdg~~l~va~--~~~~~v~v~D 352 (543)
T 1nir_A 287 ASHEHPEFIVNVK---ETGKVLLVNYKDIDNL--TVTSIGAAPF---L----HDGGWDSSHRYFMTAA--NNSNKVAVID 352 (543)
T ss_dssp ECSSSSEEEEEET---TTTEEEEEECTTSSSC--EEEEEECCSS---C----CCEEECTTSCEEEEEE--GGGTEEEEEE
T ss_pred ECCCCCEEEEEEC---CCCeEEEEEecCCCcc--eeEEeccCcC---c----cCceECCCCCEEEEEe--cCCCeEEEEE
Confidence 22 3555454432 2345555544432221 2223322111 0 112233 344455432 2346788899
Q ss_pred CCCCcEEE
Q 012227 432 VMSREWLK 439 (468)
Q Consensus 432 ~~t~~w~~ 439 (468)
.++++...
T Consensus 353 ~~tg~l~~ 360 (543)
T 1nir_A 353 SKDRRLSA 360 (543)
T ss_dssp TTTTEEEE
T ss_pred CCCCeEEE
Confidence 99987654
No 128
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=85.82 E-value=21 Score=32.62 Aligned_cols=146 Identities=7% Similarity=-0.034 Sum_probs=72.4
Q ss_pred Cce-EEEEEcCCceEEEEcC-CCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-----
Q 012227 214 GGL-VCFLDIGHRNFYVCNP-LTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS----- 286 (468)
Q Consensus 214 ~GL-l~~~~~~~~~~~V~NP-~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~----- 286 (468)
+|- .++.......+.+||. .+++...+.... .... ...+.+. + .-.++..+.++.+.+||..+..
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~--v~~l~~~--~---~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE-ANLG--ICRICKY--G---DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSEEECBSCC-CCSC--EEEEEEE--T---TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred CCCcEEEEEcCCCeEEEEEeccCCceEeccccC-CCCc--eEEEEeC--C---CCEEEEEcCCCeEEEEccccccccccc
Confidence 444 4444444568999999 888877665410 1111 2233333 2 2345555556679999876400
Q ss_pred --ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCC-Ce--EEEeecCCCCCCCCceEEEE--CCeE
Q 012227 287 --WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVT-GV--WKQFIIPTPLHLNDHTLAEC--GGRI 359 (468)
Q Consensus 287 --W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~-~~--w~~i~~P~p~~~~~~~l~~~--~G~L 359 (468)
.+.+..+... ..-..+.+.+.-.+.+.....|..||+.+ .. ......+... .-..+... +|++
T Consensus 139 ~~~~~~~~~~~~--------~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 139 VKNLNSNNTKVK--------NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY--QIRDVALLPKEQEG 208 (342)
T ss_dssp EEESCSSSSSSC--------CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS--CEEEEEECSGGGCE
T ss_pred ccCCeeeEEeeC--------CceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC--ceeEEEECCCCCCE
Confidence 1112111100 01112333222234444556899999987 32 3332222211 11223333 4676
Q ss_pred EEEEEEeeCCccEEEEEEEecC
Q 012227 360 MLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 360 ~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
++++.. ...+.||.++..
T Consensus 209 l~~~~~----dg~i~i~~~~~~ 226 (342)
T 1yfq_A 209 YACSSI----DGRVAVEFFDDQ 226 (342)
T ss_dssp EEEEET----TSEEEEEECCTT
T ss_pred EEEEec----CCcEEEEEEcCC
Confidence 665542 357899988765
No 129
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.32 E-value=22 Score=32.51 Aligned_cols=104 Identities=10% Similarity=0.044 Sum_probs=58.3
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-C--cEEEEeCCCCCccC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-G--EYEIYDSLRNSWTR 289 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~--~v~vy~s~t~~W~~ 289 (468)
.+|-|++.+....+++++||.++....+... ....++.+++ . .++++.... . .+..|+..+++.+.
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~------~~p~gia~~~--d---G~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVE------GKVSGLAFTS--N---GDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEEECS------SEEEEEEECT--T---SCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCeEEEECCCCceEEEEeCC------CCceeEEEcC--C---CcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 3677888876667899999987644333321 1234555552 1 235554432 2 26777877777654
Q ss_pred CCCCCCCcccCcccccccceE--EECCEEEEEEcCCCeEEEEECCCCe
Q 012227 290 PGSMPSNIKLPVSLNFRSQAV--SVDGILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v--~~~G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
+...+.. .+ ..++ ..++.+|+.......|..+|+.+..
T Consensus 110 ~~~~~~~-------~~-~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 110 LLTLPDA-------IF-LNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp EEECTTC-------SC-EEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEeCCCc-------cc-cCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 4322211 11 1122 2356778776555689999988653
No 130
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=85.28 E-value=37 Score=35.01 Aligned_cols=187 Identities=11% Similarity=0.105 Sum_probs=94.1
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCc-eE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQS-FK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNS 286 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~-~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~ 286 (468)
+...+|.|++.+....++..+++-... .. .+.. .. ....|+.+| .. .-++|+.... +.+++++.....
T Consensus 47 ~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~----~~P~GlAvD--~~--~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 47 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GL----LSPDGLACD--WL--GEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SC----SCEEEEEEE--TT--TTEEEEEETTTTEEEEEETTSCS
T ss_pred EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CC----CCcCeEEEE--ec--CCEEEEEeCCCCEEEEEECCCCC
Confidence 455689999998877789998887653 12 2222 11 123456666 21 2467766543 348888876432
Q ss_pred ccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeE
Q 012227 287 WTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRI 359 (468)
Q Consensus 287 W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L 359 (468)
=+.+.. .... ...++++ +|.+||-... ...|..++++...-..+ ... .... ..|+.- +++|
T Consensus 118 ~~~l~~--~~l~-------~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~~~--~~~~P~Glald~~~~~L 185 (619)
T 3s94_A 118 RKVLFW--QELD-------QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-INS--EIYWPNGLTLDYEEQKL 185 (619)
T ss_dssp CEEEEC--SSCS-------CCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECS--SCSSEEEEEEETTTTEE
T ss_pred EEEEEe--CCCC-------CCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-EeC--CCCCCcEEEEEccCCEE
Confidence 111110 1111 1224444 6899998753 45788999876544443 111 1111 234443 6899
Q ss_pred EEEEEEeeCCccEEEEEEEecCC-CCeEEEE-eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227 360 MLVGLLTKNAATCVCIWELQKMT-LLWKEVD-RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 360 ~lv~~~~~~~~~~i~Vw~ld~~~-~~W~~v~-~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~ 436 (468)
|++.... . .||+++... .....+. .++ .+......++.||+. ......|.+.|..+++
T Consensus 186 Y~aD~~~----~--~I~~~~~dG~~~~~~~~~~~~-----------~P~gi~~~~~~ly~t--d~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 186 YWADAKL----N--FIHKSNLDGTNRQAVVKGSLP-----------HPFALTLFEDILYWT--DWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEETTT----C--CEEEESSSCCEEC--------------------CCCEEESSSEEEEE--CTTTCSEEEEESSSCC
T ss_pred EEEeCCC----C--eEEEecCCCCccEEEEeCCCC-----------CceEEEEeCCEEEEe--cCCCCEEEEEECCCCc
Confidence 9875321 2 566666542 1121111 110 011112235577663 2234678888887664
No 131
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=85.17 E-value=10 Score=39.82 Aligned_cols=148 Identities=13% Similarity=0.144 Sum_probs=76.8
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~W 287 (468)
+...+|.|++.+....++.++++-.+..+.+-...... . .++.+|+ . ...||+.... ..+++++.....-
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~--P--~giavDp--~--~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK--P--RAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC--C--CCEECCS--S--SSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC--c--ceEEEcc--C--CCcEEEcccCCCCeEEEEeCCCCCe
Confidence 44467778887766678999998877655543321111 1 2233441 1 1234433211 3456655432211
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCC-CCCceEEEECCeEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH-LNDHTLAECGGRIMLVG 363 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~-~~~~~l~~~~G~L~lv~ 363 (468)
+.+.. ..+. ...++.+ ++.|||.......|.+||+....-..+ +..... ..-..|+..++.||++.
T Consensus 532 ~~l~~--~~l~-------~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~-~~~~~~~~~P~glavd~~~lywtd 601 (699)
T 1n7d_A 532 YSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTD 601 (699)
T ss_dssp CEESC--SSCS-------SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE-CCCSSSCSSCCCCEEETTEEEEEC
T ss_pred eEEEe--CCCC-------CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE-EecCCcCCCceEeEEECCEEEEEe
Confidence 11100 0111 1234555 489999998778899999976544443 221111 12234566788888876
Q ss_pred EEeeCCccEEEEEEEecC
Q 012227 364 LLTKNAATCVCIWELQKM 381 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~ 381 (468)
... . .|++++..
T Consensus 602 ~~~----~--~V~~~d~~ 613 (699)
T 1n7d_A 602 IIN----E--AIFSANRL 613 (699)
T ss_dssp STT----T--CEEEEETT
T ss_pred CCC----C--eEEEEEcc
Confidence 211 2 56666653
No 132
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=85.12 E-value=23 Score=32.47 Aligned_cols=200 Identities=12% Similarity=0.122 Sum_probs=97.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----CcEEEEeCCCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----GEYEIYDSLRNS 286 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~~v~vy~s~t~~ 286 (468)
+.+|-|++.+.....++++|+.+++...+..... ....++..++ . .++++.... ..+.+||..++.
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~--d---g~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHK--D---GRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECT--T---SCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC----CCcceEEECC--C---CcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 3567677666555689999999998776532111 1123444442 1 245544433 358889887765
Q ss_pred ccCC-CCCCCCcccCcccccccceEEE--CCEEEEEEcC------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-C
Q 012227 287 WTRP-GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSD------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-G 356 (468)
Q Consensus 287 W~~~-~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~ 356 (468)
-+.. ...... . ....+.+ +|.+|+.... ...|..+|+.+++...+.... .....++.. +
T Consensus 124 ~~~~~~~~~~~-------~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~i~~~~d 192 (333)
T 2dg1_A 124 LQDIIEDLSTA-------Y-CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI---SVANGIALSTD 192 (333)
T ss_dssp CEEEECSSSSC-------C-CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE---SSEEEEEECTT
T ss_pred EEEEEccCccC-------C-cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC---CcccceEECCC
Confidence 4311 110000 0 1112333 6888776542 246888998877665542110 011123222 5
Q ss_pred Ce-EEEEEEEeeCCccEEEEEEEecCCCCeEEEE-eeChhhhhcccCc-ceEEEEEecCCEEEEEeeeCCCCeEEEEECC
Q 012227 357 GR-IMLVGLLTKNAATCVCIWELQKMTLLWKEVD-RMPNIWCLDFYGK-HVRMTCLGNKGLLMLSLRSRQMNRLVTYNVM 433 (468)
Q Consensus 357 G~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~-~mp~~~~~~~~~~-~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~ 433 (468)
|+ ||+... ....+.+|.++.......... .... .+.+. ...-.++..+|.||+... ..+.|.+||++
T Consensus 193 g~~l~v~~~----~~~~i~~~d~~~~g~~~~~~~~~~~~----~~~~~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~~ 262 (333)
T 2dg1_A 193 EKVLWVTET----TANRLHRIALEDDGVTIQPFGATIPY----YFTGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKR 262 (333)
T ss_dssp SSEEEEEEG----GGTEEEEEEECTTSSSEEEEEEEEEE----ECCSSSEEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred CCEEEEEeC----CCCeEEEEEecCCCcCcccccceEEE----ecCCCCCCCceEECCCCCEEEEEc--CCCEEEEECCC
Confidence 65 665431 123455555543223333221 1100 00010 011234445667776432 23579999997
Q ss_pred CCcEEEcc
Q 012227 434 SREWLKVP 441 (468)
Q Consensus 434 t~~w~~v~ 441 (468)
.+....+.
T Consensus 263 g~~~~~~~ 270 (333)
T 2dg1_A 263 GYPIGQIL 270 (333)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 66665553
No 133
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=84.85 E-value=21 Score=31.79 Aligned_cols=155 Identities=10% Similarity=0.092 Sum_probs=82.7
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCCCC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLRNS 286 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t~~ 286 (468)
+...+|.|++.+....++.++|+-......+-..... ...++.+|+ ..-++++.... ..+.+++.....
T Consensus 86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~----~P~~i~vd~----~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV----NPRGIVTDP----VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----SEEEEEEET----TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred EEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCC----CccEEEEee----CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 5556788998887777899999875543333221111 123455552 12456655432 347777764322
Q ss_pred ccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEE
Q 012227 287 WTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVG 363 (468)
Q Consensus 287 W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~ 363 (468)
-+.+.. .... ...++.+ ++.+||.....+.|.+||+.+..-..+ .+.. ..-..++.-+|.||++.
T Consensus 158 ~~~~~~--~~~~-------~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-~~~~--~~P~gi~~d~~~lyva~ 225 (267)
T 1npe_A 158 RRILAQ--DNLG-------LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV-LEGL--QYPFAVTSYGKNLYYTD 225 (267)
T ss_dssp CEEEEC--TTCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE-EECC--CSEEEEEEETTEEEEEE
T ss_pred cEEEEE--CCCC-------CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE-ecCC--CCceEEEEeCCEEEEEE
Confidence 111110 0101 1224444 579999988778999999986543333 2211 11124455688888865
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
... . .|++++..+ .+.+..++
T Consensus 226 ~~~----~--~v~~~d~~~--g~~~~~i~ 246 (267)
T 1npe_A 226 WKT----N--SVIAMDLAI--SKEMDTFH 246 (267)
T ss_dssp TTT----T--EEEEEETTT--TEEEEEEC
T ss_pred CCC----C--eEEEEeCCC--CCceEEEc
Confidence 321 2 567777643 34444443
No 134
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=84.83 E-value=14 Score=33.91 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=56.3
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-.++.......+.|||..+++...+.....+......+. +. +....-.++..+.++.+.+||..++.|.....
T Consensus 23 ~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~--~~--~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 23 YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA--WA--HPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEE--EC--CGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEE--eC--CCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 345444444445678888887765432221111111222222 22 11111234444556779999998877754321
Q ss_pred CCCCcccCcccccccceEEE--C--CEEEEEEcCCCeEEEEECCCC-eEEE
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--D--GILYFMRSDPEGIVSYNMVTG-VWKQ 338 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~--G~lY~~~~~~~~i~~fD~~~~-~w~~ 338 (468)
+.... ..-..+.+ + |.+.+.+.....|..+|+.++ .|..
T Consensus 99 ~~~h~-------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 99 HAGHD-------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp ECCCS-------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred ccCCC-------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 11110 01112323 2 555555555567888888765 4643
No 135
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=84.50 E-value=41 Score=34.91 Aligned_cols=191 Identities=8% Similarity=-0.002 Sum_probs=91.5
Q ss_pred eEEEEcCCCCce--EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-C--cEEEEeCCCCCccCCCCCCCCcccC
Q 012227 226 NFYVCNPLTQSF--KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-G--EYEIYDSLRNSWTRPGSMPSNIKLP 300 (468)
Q Consensus 226 ~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~--~v~vy~s~t~~W~~~~~~p~~~~~~ 300 (468)
.+++++.-|++- +.+-..+... ....+.... ..+.+.++..... . .+.+++..++.|+.+..-..
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~--~~~~~~~~S---pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~----- 272 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDP--TTFLQSDLS---RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG----- 272 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCT--TCEEEEEEC---TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-----
T ss_pred EEEEEECCCCchhceEEEecCCCC--EEEEEEEEC---CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-----
Confidence 488998887762 2222111111 111233332 2234444433332 2 35555665666765532110
Q ss_pred cccccccceEEECCEEEEEEc---CCCeEEEEECCCCe---EEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEE
Q 012227 301 VSLNFRSQAVSVDGILYFMRS---DPEGIVSYNMVTGV---WKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVC 374 (468)
Q Consensus 301 ~~~~~~~~~v~~~G~lY~~~~---~~~~i~~fD~~~~~---w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~ 374 (468)
.....+..+|.+|+.+. ....|..+|+.+.. |..+ ++......-..+...+|.|++..... ...+
T Consensus 273 ----~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~~~~lv~~~~~d----g~~~ 343 (695)
T 2bkl_A 273 ----AKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIVGGHLSLEYLKD----ATSE 343 (695)
T ss_dssp ----CCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEETTEEEEEEEET----TEEE
T ss_pred ----ceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEECCEEEEEEEEC----CEEE
Confidence 01223335677766654 23579999997754 7776 33221111122334588887665432 3567
Q ss_pred EEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-CCCeEEEEECCCCcEEEccC
Q 012227 375 IWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-QMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 375 Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-~~~~l~~YD~~t~~w~~v~~ 442 (468)
||.++.... .+..+...-..... .+..-.+++.+++...+. ....++.||+.+++.+.+..
T Consensus 344 l~~~~~~g~---~~~~l~~~~~~~v~----~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 344 VRVATLKGK---PVRTVQLPGVGAAS----NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEETTCC---EEEECCCSSSSEEC----CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCC---eeEEecCCCCeEEE----EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence 888875322 22223210000000 000111345666544332 34579999999988776643
No 136
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=84.27 E-value=5.4 Score=37.18 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=69.6
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC------Cc
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN------SW 287 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~------~W 287 (468)
+|-+++.......+.+||..++.+..+.....+.... ..+.+. +......++..+.++.+.+|+..++ .|
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v--~~~~~~--~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV--WSSDFD--KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE--EEEEec--CCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 4555555555567899998877654433221111122 233343 2222345555455667899886533 23
Q ss_pred cCCCCCCCCcccCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC-CceEEEE----CCeEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN-DHTLAEC----GGRIML 361 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~-~~~l~~~----~G~L~l 361 (468)
.....++..... .-..+.+ .+.+.+.++....|..||..++.|..+......+.. ....+.. +|++.+
T Consensus 240 ~~~~~~~~~h~~------~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 240 VCEAILPDVHKR------QVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEECCSCCSS------CEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred EEeeeccccccc------ceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 322211110000 0111111 222333344556788899988887654221111111 1222222 455554
Q ss_pred EEEEeeCCccEEEEEEEec
Q 012227 362 VGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~ 380 (468)
.+. . ...+.||.++.
T Consensus 314 s~s-~---Dg~v~~W~~~~ 328 (330)
T 2hes_X 314 TGG-D---DGIVNFWSLEK 328 (330)
T ss_dssp EEE-T---TSEEEEEEC--
T ss_pred Eec-C---CCcEEEEEecc
Confidence 443 2 25789997653
No 137
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=84.10 E-value=26 Score=32.34 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=63.1
Q ss_pred cCceEEEEEcCCceEEEEcCCCC--ceEecCCCCc----CCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQ--SFKELPARSV----KVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLR 284 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~--~~~~LP~~~~----~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t 284 (468)
.+|-+++.+....++.++|+-.+ ....+..... ........++.+++ .+..+++... ...+.+|+...
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~----~~g~lyv~d~~~~~~I~~~~~~g 175 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP----STGAVFVSDGYCNSRIVQFSPSG 175 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT----TTCCEEEEECSSCCEEEEECTTS
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC----CCCeEEEEeCCCCCeEEEEcCCC
Confidence 46777887777778999998765 3333422100 00111234555552 1235666653 44588888543
Q ss_pred CCccCCCCCCCC-cccCcccccccceEEE--C-CEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 285 NSWTRPGSMPSN-IKLPVSLNFRSQAVSV--D-GILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 285 ~~W~~~~~~p~~-~~~~~~~~~~~~~v~~--~-G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
..-..+...... ...+.... ...++.+ + |.+|+.......|..||+.++++..
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~-~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFS-VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR 232 (329)
T ss_dssp CEEEEECEECCSSSCCTTEES-CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEeccCCCCCCCCCcccC-CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 221111100000 00000011 1234445 4 8999998877899999999666544
No 138
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=84.06 E-value=31 Score=33.19 Aligned_cols=183 Identities=10% Similarity=0.076 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC---cEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG---EYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~---~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
..+++||..++..+.+.... .. ...+.+.+ +.-+|+....+. .+.++|..+++...+...+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~---~~--v~~~~~Sp----dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~------ 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP---QP--LMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------ 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES---SC--EEEEEECT----TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS------
T ss_pred ceEEEEcCCCCCCEEEeCCC---Cc--ceeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC------
Confidence 57999998776655543311 11 12233331 112444444443 58999998876654322111
Q ss_pred ccccccceEEE--CCE-EEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEE
Q 012227 302 SLNFRSQAVSV--DGI-LYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVC 374 (468)
Q Consensus 302 ~~~~~~~~v~~--~G~-lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~ 374 (468)
....+.+ +|. |++.... ...|..+|+.+++...+. ... ....-..+ +|+..++... . .....
T Consensus 224 ----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~-~~~---~~~~~~~~spdg~~l~~~s~-~--~g~~~ 292 (415)
T 2hqs_A 224 ----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGR---SNNTEPTWFPDSQNLAFTSD-Q--AGRPQ 292 (415)
T ss_dssp ----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCS---SCEEEEEECTTSSEEEEEEC-T--TSSCE
T ss_pred ----cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc-CCC---CcccceEECCCCCEEEEEEC-C--CCCcE
Confidence 0112222 554 5545432 245889999988765441 111 11112222 6764444331 1 12346
Q ss_pred EEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 375 IWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 375 Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
||.++..+++-..+..- +....-..+. ++..|++.........+..+|+++++.+.+..
T Consensus 293 i~~~d~~~~~~~~l~~~---------~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~ 352 (415)
T 2hqs_A 293 VYKVNINGGAPQRITWE---------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 352 (415)
T ss_dssp EEEEETTSSCCEECCCS---------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC
T ss_pred EEEEECCCCCEEEEecC---------CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC
Confidence 77777654442221110 0011112233 45556553322223579999999999887754
No 139
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=83.56 E-value=15 Score=37.72 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=63.7
Q ss_pred CCEEEEEEcCCC--eEEEEECCCCeEEEeecCCCCCCC-------CceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCC
Q 012227 313 DGILYFMRSDPE--GIVSYNMVTGVWKQFIIPTPLHLN-------DHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMT 382 (468)
Q Consensus 313 ~G~lY~~~~~~~--~i~~fD~~~~~w~~i~~P~p~~~~-------~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~ 382 (468)
+|++|+...... .|..+|+.++++..+ .+...... ...++.. +|++++... . ....||.++..+
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~----~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATGAATQL-CRREEEFAGPLWTPGMRWFAPLANGLIAVVHG----K-GAAVLGILDPES 325 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB----S-SSCEEEEEETTT
T ss_pred CCeEEEEECCCCCeEEEEEECCCCceeec-ccccccccCccccccCceEeEeCCCEEEEEEE----c-CccEEEEEECCC
Confidence 788888775433 688899988888765 33221110 1233433 678776543 1 456899988765
Q ss_pred CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-CCCCeEEEEECCCCcEEEcc
Q 012227 383 LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS-RQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 383 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~-~~~~~l~~YD~~t~~w~~v~ 441 (468)
+.... +... .+....+. ...++.+++...+ .....++.+|+++++.+.+.
T Consensus 326 ~~~~~---l~~~-----~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 326 GELVD---AAGP-----WTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp TEEEE---CCSS-----CCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CcEEE---ecCC-----CCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 54433 2211 00001111 2245655553333 23347889999999888774
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=83.33 E-value=14 Score=32.63 Aligned_cols=184 Identities=9% Similarity=-0.015 Sum_probs=82.4
Q ss_pred ceEEEEcCCC-CceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe----cCcEEEEeCCCCCccCCCCCCCCccc
Q 012227 225 RNFYVCNPLT-QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC----DGEYEIYDSLRNSWTRPGSMPSNIKL 299 (468)
Q Consensus 225 ~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~----~~~v~vy~s~t~~W~~~~~~p~~~~~ 299 (468)
..+++||..+ ++...+...... .....+.+ . + . .-.++.... ...+..++..++.-+.+.....
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~--s--p-d-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 130 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDTGFAT-ICNNDHGI--S--P-D-GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP---- 130 (297)
T ss_dssp TEEEEEESSSCCSCEECCCTTCC-CBCSCCEE--C--T-T-SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS----
T ss_pred CeEEEEeCCCCCCceEecccccc-ccccceEE--C--C-C-CCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC----
Confidence 4799999999 877766543211 11111222 2 1 1 123333331 1236666666655433321110
Q ss_pred CcccccccceEEE--CCE-EEEEEcCCC--eEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEE
Q 012227 300 PVSLNFRSQAVSV--DGI-LYFMRSDPE--GIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCV 373 (468)
Q Consensus 300 ~~~~~~~~~~v~~--~G~-lY~~~~~~~--~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i 373 (468)
...+.+ +|. +++...... .|..+|..+.....+.. .. .....+.-. +|+..++.... ...+
T Consensus 131 -------~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~s~dg~~l~~~~~~---~~~~ 197 (297)
T 2ojh_A 131 -------SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-GE--GRNDGPDYSPDGRWIYFNSSR---TGQM 197 (297)
T ss_dssp -------EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-SS--SCEEEEEECTTSSEEEEEECT---TSSC
T ss_pred -------ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-CC--CccccceECCCCCEEEEEecC---CCCc
Confidence 011112 443 444443323 35555676666554311 11 111122222 66654444321 2356
Q ss_pred EEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeC--------CCCeEEEEECCCCcEEEcc
Q 012227 374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSR--------QMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 374 ~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~--------~~~~l~~YD~~t~~w~~v~ 441 (468)
.||.++........+..-.. ......+. ++..|++..... ....++.||+++++...+.
T Consensus 198 ~i~~~~~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 198 QIWRVRVDGSSVERITDSAY---------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEETTSSCEEECCCCSE---------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred cEEEECCCCCCcEEEecCCc---------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 89998855444433221110 01112233 445555433221 1256999999998766553
No 141
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=82.81 E-value=20 Score=32.66 Aligned_cols=142 Identities=12% Similarity=-0.005 Sum_probs=65.3
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.......+.+||..+++... +.. .......+.+..+ .-.++..+.++.+.+||..++.-.. .
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~---~~~~v~~~~~~~~------~~~l~s~s~d~~i~vwd~~~~~~~~--~ 92 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIAR------KNWIIVGSDDFRIRVFNYNTGEKVV--D 92 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEEEGG------GTEEEEEETTSEEEEEETTTCCEEE--E
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeec---cCCcEEEEEEeCC------CCEEEEECCCCEEEEEECCCCcEEE--E
Confidence 33333333344578888888776432 221 1111223333323 1133333445669999987764211 0
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCCceEEEE---CCeEEEEEEEe
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLNDHTLAEC---GGRIMLVGLLT 366 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~~~~ 366 (468)
+..+. ..-..+.+ +|.+.+.+.....|..+|+.++ ..... +. .+......+.. ++.+++.+..
T Consensus 93 ~~~h~-------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~~--~h~~~v~~v~~~p~~~~~l~sgs~- 161 (304)
T 2ynn_A 93 FEAHP-------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FE--GHEHFVMCVAFNPKDPSTFASGCL- 161 (304)
T ss_dssp EECCS-------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-EC--CCCSCEEEEEECTTCTTEEEEEET-
T ss_pred EeCCC-------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-hc--ccCCcEEEEEECCCCCCEEEEEeC-
Confidence 00000 00112222 4555455555567888998765 32221 11 11111222232 3455554432
Q ss_pred eCCccEEEEEEEec
Q 012227 367 KNAATCVCIWELQK 380 (468)
Q Consensus 367 ~~~~~~i~Vw~ld~ 380 (468)
...+.||.+..
T Consensus 162 ---D~~v~iwd~~~ 172 (304)
T 2ynn_A 162 ---DRTVKVWSLGQ 172 (304)
T ss_dssp ---TSEEEEEETTC
T ss_pred ---CCeEEEEECCC
Confidence 25789997654
No 142
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=82.67 E-value=28 Score=32.24 Aligned_cols=66 Identities=9% Similarity=0.131 Sum_probs=42.8
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEE-EECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLA-ECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~-~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~ 390 (468)
++.+||+......|..||+.+++...+..+. .-..++ .-+|++++.. . . .|+.++..+++.+.+..
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~----~v~~i~~~~dg~l~v~~--~----~--gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKTVHALPF----MGSALAKISDSKQLIAS--D----D--GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEEEEECSS----CEEEEEEEETTEEEEEE--T----T--EEEEEETTTCCEEEEEC
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEECCC----cceEEEEeCCCeEEEEE--C----C--CEEEEECCCCcEEEEee
Confidence 3789999876678999999998877654331 112233 3478887653 1 1 36777776677666543
No 143
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=82.21 E-value=14 Score=34.77 Aligned_cols=98 Identities=8% Similarity=0.110 Sum_probs=46.4
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-----CCEEEEEEcCCCeEEEEECCCCeEEEeec
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-----DGILYFMRSDPEGIVSYNMVTGVWKQFII 341 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-----~G~lY~~~~~~~~i~~fD~~~~~w~~i~~ 341 (468)
.++..+.++.+.+||..++.-...-..+.. ...+.+ ++.+.+.+.....|..||+.+...... +
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~ 182 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEET----------VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-L 182 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSC----------EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-E
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCc----------eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-e
Confidence 344444466799999887653221111100 011111 344555555556789999987653322 1
Q ss_pred CCCCCCCCc-eEEEE-CCe-EEEEEEEeeCCccEEEEEEEecC
Q 012227 342 PTPLHLNDH-TLAEC-GGR-IMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 342 P~p~~~~~~-~l~~~-~G~-L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
.. +.... .+... +|. +++++.. ...+.+|.+...
T Consensus 183 ~~--~~~~v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~ 219 (408)
T 4a11_B 183 QG--HRQEILAVSWSPRYDYILATASA----DSRVKLWDVRRA 219 (408)
T ss_dssp CC--CCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTCS
T ss_pred cC--CCCcEEEEEECCCCCcEEEEEcC----CCcEEEEECCCC
Confidence 11 11111 22222 344 4544432 246788876543
No 144
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=82.00 E-value=32 Score=31.80 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=66.3
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc--cCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW--TRP 290 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W--~~~ 290 (468)
+|-+++.......+.+||..+++... ++.. ... ...+.+.+ ..-.++..+.++.+.+|+..++.- +..
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~---~~~--v~~~~~s~----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLR---SSW--VMTCAYAP----SGNYVACGGLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECS---SSC--EEEEEECT----TSSEEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEeecC---Ccc--EEEEEECC----CCCEEEEEeCCCeEEEEECccCCCcceeE
Confidence 44444444445678889888776542 3321 111 22333331 122344444456799999875431 110
Q ss_pred CCCCCCcccCcccccccceE-EECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227 291 GSMPSNIKLPVSLNFRSQAV-SVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK 367 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v-~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~ 367 (468)
..+.... ....... .-++.+. .+.....|..+|+.+++.... +.. +.....-+.. +|++++.+..
T Consensus 137 ~~~~~h~------~~v~~~~~~~~~~l~-s~s~d~~i~~wd~~~~~~~~~-~~~--h~~~v~~~~~~~~~~~l~sg~~-- 204 (340)
T 1got_B 137 RELAGHT------GYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTT-FTG--HTGDVMSLSLAPDTRLFVSGAC-- 204 (340)
T ss_dssp EEEECCS------SCEEEEEEEETTEEE-EEETTSCEEEEETTTTEEEEE-ECC--CSSCEEEEEECTTSSEEEEEET--
T ss_pred EEecCCC------ccEEEEEECCCCcEE-EEECCCcEEEEECCCCcEEEE-EcC--CCCceEEEEECCCCCEEEEEeC--
Confidence 0000000 0001111 1245543 344456789999998865432 211 1111122222 5666655432
Q ss_pred CCccEEEEEEEe
Q 012227 368 NAATCVCIWELQ 379 (468)
Q Consensus 368 ~~~~~i~Vw~ld 379 (468)
...+.+|.+.
T Consensus 205 --d~~v~~wd~~ 214 (340)
T 1got_B 205 --DASAKLWDVR 214 (340)
T ss_dssp --TSCEEEEETT
T ss_pred --CCcEEEEECC
Confidence 2578899554
No 145
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=81.58 E-value=32 Score=31.59 Aligned_cols=188 Identities=9% Similarity=0.038 Sum_probs=86.7
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.......+.+||..+++... +..... ....+. +.+ +.-.++..+.++.+.+|+..++.=...
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~---~~~~~~--~sp----dg~~l~~g~~dg~v~i~~~~~~~~~~~-- 159 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV---DAWTLA--FSP----DSQYLATGTHVGKVNIFGVESGKKEYS-- 159 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT---CCCCEE--ECT----TSSEEEEECTTSEEEEEETTTCSEEEE--
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc---cEEEEE--ECC----CCCEEEEEcCCCcEEEEEcCCCceeEE--
Confidence 44444444455678899988876543 222111 111222 221 112333333355689998876542110
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEEEeeC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGLLTKN 368 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~~~~~ 368 (468)
+.... . ....+.+ +|.+.+.+.....|..||+.+.+.... +.. +.... .+.-. +|++++.+.
T Consensus 160 ~~~~~------~-~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~~--h~~~v~~l~~spd~~~l~s~s---- 225 (321)
T 3ow8_A 160 LDTRG------K-FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEG--HAMPIRSLTFSPDSQLLVTAS---- 225 (321)
T ss_dssp EECSS------S-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECC--CSSCCCEEEECTTSCEEEEEC----
T ss_pred ecCCC------c-eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-Ecc--cCCceeEEEEcCCCCEEEEEc----
Confidence 00000 0 0112222 566666666667899999998865432 221 11112 22222 666655442
Q ss_pred CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 369 AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 369 ~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
....+.||.+.. .. .+..+.. ..+ .+.-.++.-++..++.. ...+.+.+||+.+++..
T Consensus 226 ~dg~i~iwd~~~--~~--~~~~~~~-----h~~-~v~~~~~sp~~~~l~s~--s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 226 DDGYIKIYDVQH--AN--LAGTLSG-----HAS-WVLNVAFCPDDTHFVSS--SSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp TTSCEEEEETTT--CC--EEEEECC-----CSS-CEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEE
T ss_pred CCCeEEEEECCC--cc--eeEEEcC-----CCC-ceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCEEE
Confidence 235689996543 22 2222211 000 01111222233333322 23567899999887643
No 146
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=81.33 E-value=33 Score=31.52 Aligned_cols=191 Identities=9% Similarity=0.023 Sum_probs=82.8
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC-CCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP-GSM 293 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~-~~~ 293 (468)
|-+++.......+.|||..+++....-.+..+.... ..+.+.+ ..-.++..+.++.+.+||..++.-... ..-
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v--~~~~~~~----~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~ 121 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGV--VSVDISH----TLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCE--EEEEECC----CCCEEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence 434444444556778877665443221111111112 2222221 112333333456799999877642211 000
Q ss_pred CCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCcc
Q 012227 294 PSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAAT 371 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~ 371 (468)
+.. ...-...-+|...+.+.....+..||+.++.-... +... .....-+.. +|++.+++.. ..
T Consensus 122 ~~~--------~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~--~~~v~~~~~spdg~~lasg~~----dg 186 (321)
T 3ow8_A 122 PVD--------AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTR--GKFILSIAYSPDGKYLASGAI----DG 186 (321)
T ss_dssp TTC--------CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE-EECS--SSCEEEEEECTTSSEEEEEET----TS
T ss_pred Ccc--------EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCC--CceEEEEEECCCCCEEEEEcC----CC
Confidence 000 00111112556555565566788899887654332 2111 111111222 6676655432 24
Q ss_pred EEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 372 CVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 372 ~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
.+.||.+.. + +.+..+... .. .+.-.++..++.+++.. ...+.+.+||+++.+..
T Consensus 187 ~i~iwd~~~--~--~~~~~~~~h-----~~-~v~~l~~spd~~~l~s~--s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 187 IINIFDIAT--G--KLLHTLEGH-----AM-PIRSLTFSPDSQLLVTA--SDDGYIKIYDVQHANLA 241 (321)
T ss_dssp CEEEEETTT--T--EEEEEECCC-----SS-CCCEEEECTTSCEEEEE--CTTSCEEEEETTTCCEE
T ss_pred eEEEEECCC--C--cEEEEEccc-----CC-ceeEEEEcCCCCEEEEE--cCCCeEEEEECCCccee
Confidence 678885443 2 233333211 00 01112233333333322 23467888888776543
No 147
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=81.31 E-value=16 Score=37.40 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=66.3
Q ss_pred cceEEECCEEEEEEcCCCeEEEEEC-CCC--eEEEeecCCCCC--------CCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNM-VTG--VWKQFIIPTPLH--------LNDHTLAECGGRIMLVGLLTKNAATCVCI 375 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~-~~~--~w~~i~~P~p~~--------~~~~~l~~~~G~L~lv~~~~~~~~~~i~V 375 (468)
..+++.+|.+|+.......+.++|. .++ .|+.- .+.... .....++..+|+||+... . . .+
T Consensus 56 ~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d----g--~l 127 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-N----G--HL 127 (571)
T ss_dssp SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T----S--EE
T ss_pred cccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEEECCEEEEEeC-C----C--EE
Confidence 4467789999998752457999999 664 67752 322110 112345667888887532 1 1 57
Q ss_pred EEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEE
Q 012227 376 WELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLK 439 (468)
Q Consensus 376 w~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~ 439 (468)
+.+|..+ ..|+.- ++..... ....... .+ .++.||+..... ..+.++.||.++++..+
T Consensus 128 ~alD~~tG~~~W~~~--~~~~~~~--~~~~~~P-~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 128 LALDAKTGKINWEVE--VCDPKVG--STLTQAP-FV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EEEETTTCCEEEEEE--CCCGGGT--CBCCSCC-EE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEec--CCCCCcc--ceeccCC-EE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 7777643 468653 2211000 0000111 12 267887743321 14689999999886443
No 148
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=81.13 E-value=33 Score=31.36 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=35.6
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC-Ccc
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN-SWT 288 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~-~W~ 288 (468)
|-+++.......+.+||..++++..+-....+......+. +. +......++..+.++.+.+|+..++ .|.
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~--~~--p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVC--WA--PHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEE--EC--CTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEE--EC--CCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 5555555555689999998876543221111111122233 33 2111223333344567999998765 464
No 149
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=80.90 E-value=57 Score=33.95 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=63.3
Q ss_pred cCceEEEEEcCCceEEEEcCCCCc--eEecCCCCcCCc-----ceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQS--FKELPARSVKVW-----SRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN 285 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~-----~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~ 285 (468)
.+|.|++... ...++.+|+.|++ |+.-+....... .....+..++ +-+|++...++.+..+|..++
T Consensus 76 ~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~v~v~~~dg~l~alD~~tG 148 (677)
T 1kb0_A 76 VDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW------KGKVYVGAWDGRLIALDAATG 148 (677)
T ss_dssp ETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE------TTEEEEECTTSEEEEEETTTC
T ss_pred ECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE------CCEEEEEcCCCEEEEEECCCC
Confidence 4777777654 3468889999887 443222111000 0000111222 136666555666888888765
Q ss_pred C--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCC--eEEEe
Q 012227 286 S--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTG--VWKQF 339 (468)
Q Consensus 286 ~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~--~w~~i 339 (468)
+ |+.-...... ........++..+|.+|+.... ...|.+||..++ .|+.-
T Consensus 149 ~~~W~~~~~~~~~----~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 149 KEVWHQNTFEGQK----GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp CEEEEEETTTTCC----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEeeecCCcCcC----cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 4 8653210000 0011234566789999986542 367999999876 47654
No 150
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.13 E-value=61 Score=33.87 Aligned_cols=192 Identities=11% Similarity=0.048 Sum_probs=88.4
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
+.+|-.++.......+.|||..+++... +... .... ..+.+.+ . .-.++..+.++.+.+|+..++ |...
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~v--~~~~~s~---~-~~~l~~~~~dg~i~vw~~~~~-~~~~ 133 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH---PDYI--RSIAVHP---T-KPYVLSGSDDLTVKLWNWENN-WALE 133 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC---SSCE--EEEEECS---S-SSEEEEEETTSEEEEEEGGGT-SEEE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC---CCCE--EEEEEeC---C-CCEEEEEcCCCEEEEEECCCC-ceEE
Confidence 3345444444445689999998887653 3221 1112 2233331 1 123444444567999998765 2211
Q ss_pred CCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE----CCeEEEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC----GGRIMLVG 363 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~----~G~L~lv~ 363 (468)
..+... ...-..+.+ +|...+.+.....|..||+.+..-... ...... .....+.+ +|.+.+++
T Consensus 134 ~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 134 QTFEGH-------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LTTGQE-RGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EEEECC-------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE-EECCCT-TCCCEEEECCSTTCCEEEEE
T ss_pred EEEcCC-------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE-EecCCC-CCEEEEEEEECCCCCEEEEE
Confidence 111000 001112222 455666666667899999876543221 111111 11222333 66666554
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
. ....+.+|.+... ..+..+... .+ .+...++. .+..|+. . ...+.+.+||+.+++...
T Consensus 205 ~----~dg~i~~~d~~~~----~~~~~~~~~-----~~-~v~~~~~~~~~~~l~~-~--~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 205 S----DDLTIKIWDYQTK----SCVATLEGH-----MS-NVSFAVFHPTLPIIIS-G--SEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp C----TTSEEEEEETTTT----EEEEEEECC-----SS-CEEEEEECSSSSEEEE-E--ETTSCEEEEETTTCSEEE
T ss_pred e----CCCEEEEEECCCC----cEEEEEcCC-----CC-CEEEEEEcCCCCEEEE-E--eCCCeEEEEECCCCcEEE
Confidence 3 2357888855432 222222110 00 11122233 3334432 2 234678899998865443
No 151
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=80.03 E-value=37 Score=31.31 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=57.3
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|.+++.+.....++++|+.+++...+.... ....+++.-+ .++++. ....+.+||..+++.+.+..
T Consensus 59 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~----~v~~i~~~~d-------g~l~v~-~~~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 59 ASGTAWWFNILERELHELHLASGRKTVHALPF----MGSALAKISD-------SKQLIA-SDDGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp TTTEEEEEEGGGTEEEEEETTTTEEEEEECSS----CEEEEEEEET-------TEEEEE-ETTEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEECCC----cceEEEEeCC-------CeEEEE-ECCCEEEEECCCCcEEEEee
Confidence 34666666655568999999988776553311 1222332222 244433 34568899988887764432
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcC------CCeEEEEECCCCeEEEe
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSD------PEGIVSYNMVTGVWKQF 339 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~------~~~i~~fD~~~~~w~~i 339 (468)
.+... +. . ....+.+ +|.+|+-... ...|..|| +++...+
T Consensus 127 ~~~~~--~~--~-~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 127 LESDL--PG--N-RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp SSTTC--TT--E-EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred CCCCC--CC--C-CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 21110 00 0 1112223 6787765431 24688888 5666544
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=79.56 E-value=39 Score=31.29 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=57.3
Q ss_pred CCE-EEEEEcCCCeEEEEECCCCe-------EE------EeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEE
Q 012227 313 DGI-LYFMRSDPEGIVSYNMVTGV-------WK------QFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 313 ~G~-lY~~~~~~~~i~~fD~~~~~-------w~------~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
+|+ +|+.....+.|..||+.... +. .+..+.. .....++.. +|+..++.. .....+.+|.
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~---~~~~~v~v~~ 239 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG--SGPRHLIFNSDGKFAYLIN---EIGGTVIAFR 239 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT--CCEEEEEECTTSSEEEEEE---TTTCEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC--CCCeEEEEcCCCCEEEEEc---CCCCeEEEEE
Confidence 565 77766556678888776443 21 2222221 111223332 676433332 2235788888
Q ss_pred EecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECC--CCcEEEccC
Q 012227 378 LQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVM--SREWLKVPG 442 (468)
Q Consensus 378 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~--t~~w~~v~~ 442 (468)
++. +.++.+..++.... ...+ ..-.++. ++..||+.... ..+.+.+||++ +++++.+..
T Consensus 240 ~~~--g~~~~~~~~~~~~~-~~~~--~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 240 YAD--GMLDEIQTVAADTV-NAQG--SGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EET--TEEEEEEEEESCSS-CCCC--EEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEE
T ss_pred ecC--CceEEeEEEecCCC-CCCC--cccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeE
Confidence 873 55555544421110 0000 1112333 45566654322 14567888774 667666543
No 153
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=79.45 E-value=37 Score=31.00 Aligned_cols=106 Identities=7% Similarity=-0.013 Sum_probs=51.7
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM 293 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~ 293 (468)
+|-.++.......+.+||..+++...+.... .....+.+... .+.-.++..+.++.+.+||..++.-.. .+
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~ 167 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHD---APVKTIHWIKA----PNYSCVMTGSWDKTLKFWDTRSSNPMM--VL 167 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEEEEC----SSCEEEEEEETTSEEEEECSSCSSCSE--EE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeecccc---CceEEEEEEeC----CCCCEEEEccCCCcEEEEECCCCcEEE--EE
Confidence 4544444444567999999888876643311 11222333112 122234444446679999987654211 11
Q ss_pred CCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeE
Q 012227 294 PSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW 336 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w 336 (468)
... . ...........++... ....+..||..+..-
T Consensus 168 ~~~----~---~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 168 QLP----E---RCYCADVIYPMAVVAT-AERGLIVYQLENQPS 202 (368)
T ss_dssp ECS----S---CEEEEEEETTEEEEEE-GGGCEEEEECSSSCE
T ss_pred ecC----C---CceEEEecCCeeEEEe-CCCcEEEEEeccccc
Confidence 000 0 0011122344444433 445788899877643
No 154
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=79.42 E-value=67 Score=33.90 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=105.4
Q ss_pred ecCce-EEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGL-VCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GL-l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
..+|- |.+.... ..++++|+.++++..+.............++..| . +.. ++++...++.+|+..++.|+..
T Consensus 414 d~~g~~lWigt~~-~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d--~---~g~-lwigt~~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 414 DEKKSLVYIGTHA-GGLSILHRNSGQVENFNQRNSQLVNENVYAILPD--G---EGN-LWLGTLSALVRFNPEQRSFTTI 486 (795)
T ss_dssp ETTTTEEEEEETT-TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC--S---SSC-EEEEESSCEEEEETTTTEEEEC
T ss_pred cCCCCEEEEEeCc-CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC--C---CCC-EEEEecCceeEEeCCCCeEEEc
Confidence 34665 6665432 3599999999998877542110111122334444 1 123 3455556799999999988765
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeec-CCCCCC--C-CceEEE-ECCeEEEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFII-PTPLHL--N-DHTLAE-CGGRIMLVG 363 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~-P~p~~~--~-~~~l~~-~~G~L~lv~ 363 (468)
........++. . ....++. +|.+++-+ . .++..||+.++++ .+.. +..... . ...+.+ .+|.|.+..
T Consensus 487 ~~~~~~~~~~~--~-~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 487 EKEKDGTPVVS--K-QITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp CBCTTCCBCCC--C-CEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred cccccccccCC--c-eEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 42200000000 0 1112333 56766655 3 5799999999888 4321 011111 1 123333 368887643
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
. . .+++++..+++++....- .. +....+.-.+...+|.|++.. ...+..||+++++++..
T Consensus 561 ~------~--Gl~~~d~~~~~~~~~~~~-~g----l~~~~i~~i~~d~~g~lWi~t----~~Gl~~~~~~~~~~~~~ 620 (795)
T 4a2l_A 561 R------E--GFYCFNEKDKQIKRYNTT-NG----LPNNVVYGILEDSFGRLWLST----NRGISCFNPETEKFRNF 620 (795)
T ss_dssp S------S--CEEEEETTTTEEEEECGG-GT----CSCSCEEEEEECTTSCEEEEE----TTEEEEEETTTTEEEEE
T ss_pred C------C--CceeECCCCCcEEEeCCC-CC----CchhheEEEEECCCCCEEEEc----CCceEEEcCCCCcEEEc
Confidence 1 1 466777766666554211 11 111111112233567887753 25799999999998865
No 155
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=79.38 E-value=13 Score=34.38 Aligned_cols=117 Identities=9% Similarity=0.125 Sum_probs=63.7
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCC-----------------CCCceEEEE--CCeEEEEEEEeeCCccEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH-----------------LNDHTLAEC--GGRIMLVGLLTKNAATCV 373 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~-----------------~~~~~l~~~--~G~L~lv~~~~~~~~~~i 373 (468)
+|.++|++.....|..||+.+..+..+..+.... ..-..++.. +|+||+.... .
T Consensus 29 ~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~-----~-- 101 (322)
T 2fp8_A 29 TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY-----Y-- 101 (322)
T ss_dssp TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-----T--
T ss_pred CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-----C--
Confidence 5776777766678999999988777654332110 011234444 6888876421 1
Q ss_pred EEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEec-CCEEEEEeeeC---------------CCCeEEEEECCCCcE
Q 012227 374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGN-KGLLMLSLRSR---------------QMNRLVTYNVMSREW 437 (468)
Q Consensus 374 ~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~-~~~I~~~~~~~---------------~~~~l~~YD~~t~~w 437 (468)
.|++++..++..+.+....... .+. ...-.++.. +|.||+..... ..+.++.||+++++.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~--~~~--~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGV--PFK--WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp EEEEECTTCEECEEEESEETTE--ECS--CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CEEEEeCCCCEEEEecccCCCC--ccc--ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 3566676544444432221110 000 011223445 67888754221 125799999998877
Q ss_pred EEc
Q 012227 438 LKV 440 (468)
Q Consensus 438 ~~v 440 (468)
+.+
T Consensus 178 ~~~ 180 (322)
T 2fp8_A 178 TLL 180 (322)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 156
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=78.71 E-value=40 Score=30.89 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=94.6
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec------------------C
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD------------------G 275 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~------------------~ 275 (468)
+|-|++.+.. ..++++|+.+++...+............-++..| +. +..|++.... +
T Consensus 91 ~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d--~~--~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 91 NNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD--QR--TGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEEC--TT--TCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEe--cC--CCEEEEECCcccccccccceehcccCCCc
Confidence 6777777654 3588899988766555321100000112334444 20 1244443211 2
Q ss_pred cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCC---CeEEEeecCCCCCCCC
Q 012227 276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVT---GVWKQFIIPTPLHLND 349 (468)
Q Consensus 276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~---~~w~~i~~P~p~~~~~ 349 (468)
.+.+|+..++..+.... .. ....++.+ +| .+|+.......|..||+.+ .....+.- .+. -
T Consensus 166 ~v~~~d~~~~~~~~~~~---~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g---P 231 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLK---EL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN---P 231 (322)
T ss_dssp EEEEEETTTTEEEEEEE---EE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS---E
T ss_pred eEEEEeCCCCEEEEecc---CC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC---C
Confidence 37777876665432210 00 01234444 35 4788766567899999875 23433311 111 1
Q ss_pred ceEEE-ECCeEEEEEEEeeCC----ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCC
Q 012227 350 HTLAE-CGGRIMLVGLLTKNA----ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQM 424 (468)
Q Consensus 350 ~~l~~-~~G~L~lv~~~~~~~----~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 424 (468)
..++. -+|+|++........ ...-.|+++++. ++-......+.... +. ....+...++.||+.. ...
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~--~~---~~~~~~~~~g~L~v~~--~~~ 303 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA--GE---HFEQIQEHDGLLYIGT--LFH 303 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT--TS---CCCEEEEETTEEEEEC--SSC
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc--cc---cceEEEEeCCEEEEee--cCC
Confidence 12332 368888876431000 013468888874 44443334443221 11 0112223478888743 235
Q ss_pred CeEEEEECCCCc
Q 012227 425 NRLVTYNVMSRE 436 (468)
Q Consensus 425 ~~l~~YD~~t~~ 436 (468)
..|.+|+++.+.
T Consensus 304 ~~i~~~~~~~~~ 315 (322)
T 2fp8_A 304 GSVGILVYDKKG 315 (322)
T ss_dssp SEEEEEEC----
T ss_pred CceEEEeccccc
Confidence 689999987553
No 157
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=78.67 E-value=44 Score=31.37 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=82.0
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~W 287 (468)
++..+|.|++.+.....+.++++-.+....+...... ..-++.+|+ . ...+++.... ..+++++.....=
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~----~P~~iavdp--~--~g~ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE----KPRAIALHP--M--EGTIYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS----CEEEEEEET--T--TTEEEEEECSSSCEEEEEETTSCSC
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC----CcceEEEec--C--cCeEEEeccCCCCEEEEEeCCCCCc
Confidence 5667889998888777899999876654444321111 123455552 1 2356655432 3477777653322
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGL 364 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~ 364 (468)
+.+.. .... ...++.+ +|.|||.......|.++|+....-..+ +.... ..-..++..+|.||+...
T Consensus 195 ~~~~~--~~~~-------~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~-~~~~~-~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 195 RIIAD--THLF-------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV-ISQGL-PHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp EESCC--SSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECSSC-SSEEEEEEETTEEEEEET
T ss_pred EEEEE--CCCC-------CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE-EeCCC-CCceEEEEECCEEEEecC
Confidence 21111 1111 1234444 689999988778999999876433332 21111 111345567899998753
Q ss_pred EeeCCccEEEEEEEecC
Q 012227 365 LTKNAATCVCIWELQKM 381 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~ 381 (468)
.. . .|++++..
T Consensus 264 ~~----~--~V~~~~~~ 274 (349)
T 3v64_C 264 HT----K--SINSANKF 274 (349)
T ss_dssp TT----T--EEEEEETT
T ss_pred CC----C--eEEEEEcc
Confidence 21 1 56666643
No 158
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=78.50 E-value=41 Score=30.98 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=69.2
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCC
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTP 344 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p 344 (468)
+++..+.++.+.+||..++.-... +..... .-..+.+ +|.+.+.+.....|..+|+.+..-... +..
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~~~~--~~~h~~-------~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-~~~- 224 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQTTT--FTGHTG-------DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTG- 224 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE--ECCCSS-------CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-ECC-
T ss_pred cEEEEECCCcEEEEECCCCcEEEE--EcCCCC-------ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-EcC-
Confidence 466556677799999887653211 100000 0112222 566666666667899999987754332 211
Q ss_pred CCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC
Q 012227 345 LHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR 422 (468)
Q Consensus 345 ~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 422 (468)
+.....-+.+ +|++++.+.. ...+.||.+... ..+..+.... ... .+.-.++..++.+++.. .
T Consensus 225 -h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~----~~~~~~~~~~---~~~-~v~~~~~s~~g~~l~~g--~ 289 (340)
T 1got_B 225 -HESDINAICFFPNGNAFATGSD----DATCRLFDLRAD----QELMTYSHDN---IIC-GITSVSFSKSGRLLLAG--Y 289 (340)
T ss_dssp -CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTT----EEEEEECCTT---CCS-CEEEEEECTTSSEEEEE--E
T ss_pred -CcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCC----cEEEEEccCC---ccc-ceEEEEECCCCCEEEEE--C
Confidence 1111222222 5666655532 257899965432 1222221110 000 01112233344443332 2
Q ss_pred CCCeEEEEECCCCcE
Q 012227 423 QMNRLVTYNVMSREW 437 (468)
Q Consensus 423 ~~~~l~~YD~~t~~w 437 (468)
..+.+.+||..+.+-
T Consensus 290 ~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 290 DDFNCNVWDALKADR 304 (340)
T ss_dssp TTSEEEEEETTTCCE
T ss_pred CCCeEEEEEcccCcE
Confidence 356889999877643
No 159
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=78.18 E-value=50 Score=31.71 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=89.7
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cC--cEEEEeCCCCCccCCCCCCCCcccCc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DG--EYEIYDSLRNSWTRPGSMPSNIKLPV 301 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~--~v~vy~s~t~~W~~~~~~p~~~~~~~ 301 (468)
..+++||..|++...+..... .. ..+.+.+ . .-+|+..+. ++ .+.+||..++....+..-...
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~---~~--~~~~~sp---d-g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~----- 268 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR---HN--GAPAFSP---D-GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN----- 268 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS---CE--EEEEECT---T-SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC-----
T ss_pred cEEEEEECCCCcEEEeecCCC---cc--cCEEEcC---C-CCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc-----
Confidence 479999999998877654321 11 2233331 1 123443332 22 388889888766544321110
Q ss_pred ccccccceEEE--CCE-EEEEEcCC--CeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEE
Q 012227 302 SLNFRSQAVSV--DGI-LYFMRSDP--EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCI 375 (468)
Q Consensus 302 ~~~~~~~~v~~--~G~-lY~~~~~~--~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~V 375 (468)
...+.+ +|. |++..... ..|..+|+.+++...+. ... .....+.- -+|+..++.... +... .|
T Consensus 269 -----~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~--~~~-~~~~~~~~spdG~~l~~~~~~-~g~~--~i 337 (415)
T 2hqs_A 269 -----NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT--WEG-SQNQDADVSSDGKFMVMVSSN-GGQQ--HI 337 (415)
T ss_dssp -----EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC--CSS-SEEEEEEECTTSSEEEEEEEC-SSCE--EE
T ss_pred -----ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe--cCC-CcccCeEECCCCCEEEEEECc-CCce--EE
Confidence 112222 554 45444322 26888899887654431 111 11111222 267655544332 1123 44
Q ss_pred EEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 376 WELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 376 w~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
+.++..+++...+..-. ......+. ++..|++.........++.+|++++..+.++.
T Consensus 338 ~~~d~~~~~~~~l~~~~----------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 338 AKQDLATGGVQVLSSTF----------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEETTTCCEEECCCSS----------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred EEEECCCCCEEEecCCC----------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 44465445543321110 01122333 45556554332223379999999999888865
No 160
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=77.77 E-value=67 Score=33.01 Aligned_cols=191 Identities=12% Similarity=0.032 Sum_probs=97.0
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCcc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWT 288 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~ 288 (468)
....+|.|++.+.....++.+++-......+-..... . ..|+.+| .. .-.||+... ...+++.+.....-+
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~--~--p~GlAvD--~~--~~~lY~tD~~~~~I~v~~~~G~~~~ 427 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA--H--PDGIAVD--WV--ARNLYWTDTGTDRIEVTRLNGTMRK 427 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--C--CCEEEEE--TT--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC--C--cCceEEe--cc--cCcEEEEeCCCCcEEEEeCCCCeEE
Confidence 4556899999987777899999876554443321111 1 1345555 21 236776643 235888887644222
Q ss_pred CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIML 361 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~l 361 (468)
.+.. .... ...++++ +|.+||.... ...|..++++...-..+ ... .... ..|+.- +++||+
T Consensus 428 ~l~~--~~l~-------~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l-~~~--~l~~P~GlalD~~~~~LY~ 495 (619)
T 3s94_A 428 ILIS--EDLE-------EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL-VNT--SLGWPNGLALDYDEGKIYW 495 (619)
T ss_dssp EEEC--TTCC-------SEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECS--SCSCEEEEEEETTTTEEEE
T ss_pred EEEE--CCCC-------CeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE-EeC--CCCCCeeeEEcccCCEEEE
Confidence 2110 0111 1224444 5999998753 35798898875433332 111 1111 234443 689998
Q ss_pred EEEEeeCCccEEEEEEEecCCCCeEEEEe--eChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 362 VGLLTKNAATCVCIWELQKMTLLWKEVDR--MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~--mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
+... .. .|+.++.....=+.+.. ++. +......++.||+.- .....|...|..++.-+.
T Consensus 496 aD~~----~~--~I~~~~~dG~~~~~~~~~~l~~-----------P~glav~~~~ly~tD--~~~~~I~~~~k~~g~~~~ 556 (619)
T 3s94_A 496 GDAK----TD--KIEVMNTDGTGRRVLVEDKIPH-----------IFGFTLLGDYVYWTD--WQRRSIERVHKRSAEREV 556 (619)
T ss_dssp EETT----TT--EEEEEESSSCCCEEEEECCCCS-----------SCCEEEETTEEEEEC--TTSSCEEEEESSSCCEEE
T ss_pred EECC----CC--EEEEEecCCCceEEEeccCCCC-----------cEEEEEECCEEEEee--cCCCeEEEEEcCCCceEE
Confidence 7532 22 45555543221111111 110 111122356776632 234567777777764433
No 161
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=77.43 E-value=43 Score=30.59 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=36.6
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCC-CCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPA-RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~-~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
+|-+++.......+.+||..+++....-. ...... ....+.+.+ ..-.++..+.++.+.+||..++.
T Consensus 127 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD--EVLSADYDL----LGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS--CEEEEEECT----TSSEEEEEETTSCEEEEESCSHH
T ss_pred CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC--ceeEEEECC----CCCEEEEecCCCCEEEEECCCCc
Confidence 55555555555679999998877654321 111111 223344442 12244444556679999987653
No 162
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=77.02 E-value=44 Score=30.49 Aligned_cols=146 Identities=8% Similarity=0.010 Sum_probs=69.6
Q ss_pred ceEEEEEcCCceEEEEcCCC-CceE--ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLT-QSFK--ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T-~~~~--~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
|-+++.......+.+||..+ +... .+.. .... ...+.+.+ +.-.++..+.++.+.+||..++.-....
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---h~~~--v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM---HTGP--VLDVCWSD----DGSKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEE---CSSC--EEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEecc---ccCC--EEEEEECc----CCCEEEEEcCCCcEEEEEcCCCCceeec
Confidence 45555555556788998877 3322 1211 1111 22333331 1223444444667999998877643221
Q ss_pred CCCCCcccCcccccccceEEE----CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEee
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV----DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTK 367 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~----~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~ 367 (468)
.-. ..-..+.+ +|.+.+.+.....|..||+.+.+.... +..+. ....+......+ +++..
T Consensus 125 ~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~-- 188 (368)
T 3mmy_A 125 QHD----------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLPE--RCYCADVIYPMA-VVATA-- 188 (368)
T ss_dssp ECS----------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-EECSS--CEEEEEEETTEE-EEEEG--
T ss_pred ccc----------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-EecCC--CceEEEecCCee-EEEeC--
Confidence 100 01112222 566556665667899999877643221 11111 112222334433 33321
Q ss_pred CCccEEEEEEEecCCCCeEE
Q 012227 368 NAATCVCIWELQKMTLLWKE 387 (468)
Q Consensus 368 ~~~~~i~Vw~ld~~~~~W~~ 387 (468)
...+.+|.++.....+..
T Consensus 189 --~~~i~~~~~~~~~~~~~~ 206 (368)
T 3mmy_A 189 --ERGLIVYQLENQPSEFRR 206 (368)
T ss_dssp --GGCEEEEECSSSCEEEEE
T ss_pred --CCcEEEEEeccccchhhh
Confidence 246788877654444433
No 163
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=75.57 E-value=64 Score=33.23 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=75.2
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W 287 (468)
++..+|.|++.+....++.++++-.+..+.|...... ...++.+|+ . ...+|+... ...++.++.....-
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~----~P~~iavdp--~--~G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD----SPRALALDP--A--EGFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCC----CEEEEEEET--T--TTEEEEEECSSSCEEEEEETTSCSC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCC----CcccEEEcc--C--CCeEEEeCCCCCCEEEEEeCCCCce
Confidence 5556788888887777899999876655444321111 124555562 2 235665542 23466666543332
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVG 363 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~ 363 (468)
+.+.. ... ...++.+ ++.|||.......|.++|+....-..+.-..+ .-..++..+|.||+..
T Consensus 159 ~~l~~---~~~-------~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~---~P~glav~~~~ly~tD 224 (628)
T 4a0p_A 159 TTLVP---NVG-------RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP---HPFGLTQYQDYIYWTD 224 (628)
T ss_dssp EEEEC---SCS-------SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCS---CEEEEEEETTEEEEEE
T ss_pred EEEEC---CCC-------CcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCC---CceEEEEECCEEEEec
Confidence 22111 111 1234544 58999999877899999997643333211111 1135666788998865
No 164
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=75.43 E-value=54 Score=30.76 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=49.3
Q ss_pred EEEcCCCeEEEEECCCCeEEEee-cCCCCCC-CCceEEEE---CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 318 FMRSDPEGIVSYNMVTGVWKQFI-IPTPLHL-NDHTLAEC---GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 318 ~~~~~~~~i~~fD~~~~~w~~i~-~P~p~~~-~~~~l~~~---~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
+.+.....|..+|+.++.-.... ...+... ....-+.. ++.+++.+.. ...+.+|.+......-.. +.
T Consensus 174 ~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~---~~ 246 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC----DTTVRLWDLRITSRAVRT---YH 246 (380)
T ss_dssp EEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET----TSCEEEEETTTTCCCCEE---EC
T ss_pred EEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC----CCeEEEEECCCCCcceEE---EC
Confidence 33445567889999887654331 1111111 11122222 5666665532 257899965432111111 10
Q ss_pred hhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 393 NIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
...+. +.-.++.-++..++.. ...+.+..||+.+++-..
T Consensus 247 -----~h~~~-v~~v~~~p~~~~l~s~--s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 247 -----GHEGD-INSVKFFPDGQRFGTG--SDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp -----CCSSC-CCEEEECTTSSEEEEE--CSSSCEEEEETTTTEEEE
T ss_pred -----CcCCC-eEEEEEecCCCeEEEE--cCCCeEEEEECCCCcEEE
Confidence 00110 1111222233333322 245678899998876443
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=74.21 E-value=57 Score=36.31 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=72.2
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
+.+|-+++.....+.+.|||..|++... +.. +.... .++.+.+ +.-.++..+.++.+.+||..+++-...
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~---h~~~v--~~~~~s~----~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKA---HEDEV--LCCAFSS----DDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCE--EEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEecc---CCCCE--EEEEEec----CCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 4455555555555689999999987543 332 11122 2333331 112344444456799999887653211
Q ss_pred CCCCCCcccCcccccccceEEE----CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV----DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGL 364 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~----~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~ 364 (468)
.... ...-..+.+ ++.+.+.++....|..+|+.+...... +.. +......+.. +|++.+++.
T Consensus 695 --~~~~-------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-~~~--h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 695 --YDEH-------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT-MFG--HTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp --EECC-------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE-ECC--CSSCEEEEEECSSTTEEEEEE
T ss_pred --EcCC-------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe-ecC--CCCCEEEEEEecCCCEEEEEE
Confidence 0000 001112222 334444455556799999988765433 211 1111222222 566655543
Q ss_pred EeeCCccEEEEEEEec
Q 012227 365 LTKNAATCVCIWELQK 380 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~ 380 (468)
. ...+.+|.+..
T Consensus 763 ~----dg~v~vwd~~~ 774 (1249)
T 3sfz_A 763 A----DGTLRLWDVRS 774 (1249)
T ss_dssp S----SSEEEEEEGGG
T ss_pred C----CCeEEEEeCCC
Confidence 2 25789996654
No 166
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=73.74 E-value=26 Score=32.00 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM 391 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m 391 (468)
+|.+||.......|..||+.++.-..+..+ . .-..++.. +|+||+..... ....|++++..+++.+.+..+
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~--~--~p~gia~~~dG~l~vad~~~----~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGNQQIHATVE--G--KVSGLAFTSNGDLVATGWNA----DSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCCEEEEEECS--S--EEEEEEECTTSCEEEEEECT----TSCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEeCCCCeEEEECCCCceEEEEeCC--C--CceeEEEcCCCcEEEEeccC----CcceEEEEcCCCCeEEEEEeC
Confidence 688999987667899999987643333222 1 11223332 78887765321 123577777666777766655
Q ss_pred ChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
+...+. .-.+...++.+|+.. ...+.++.+|+.++
T Consensus 114 ~~~~~~-------~g~~~~~~~~~~v~d--~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 114 PDAIFL-------NGITPLSDTQYLTAD--SYRGAIWLIDVVQP 148 (306)
T ss_dssp TTCSCE-------EEEEESSSSEEEEEE--TTTTEEEEEETTTT
T ss_pred CCcccc-------CcccccCCCcEEEEE--CCCCeEEEEeCCCC
Confidence 431110 112234566676642 23468999998865
No 167
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=73.62 E-value=27 Score=36.43 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=65.0
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCC--------CCCCceEEEECCeEEEEEEEeeCCccEEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPL--------HLNDHTLAECGGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~--------~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw 376 (468)
..+++.+|.+|+.+.. ..|.++|..++ .|+.- ...+. ......++..+|+||+... + . .++
T Consensus 71 ~~P~v~~g~vyv~~~~-~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~----d-g--~l~ 141 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW-SVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW----D-G--RLI 141 (677)
T ss_dssp CCCEEETTEEEEECGG-GCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----T-S--EEE
T ss_pred eCCEEECCEEEEECCC-CeEEEEECCCCcEEEEEc-CCCCccccccccccCCCCCceEECCEEEEEcC----C-C--EEE
Confidence 3467789999998753 57999999876 57653 22211 0122345667888887531 1 1 466
Q ss_pred EEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEE
Q 012227 377 ELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWL 438 (468)
Q Consensus 377 ~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~ 438 (468)
.||.. +..|+.- ++... .......... .+ .++.||+..... ..+.++.||.++++..
T Consensus 142 alD~~tG~~~W~~~--~~~~~-~~~~~~~~~p-~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 142 ALDAATGKEVWHQN--TFEGQ-KGSLTITGAP-RV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp EEETTTCCEEEEEE--TTTTC-CSSCBCCSCC-EE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEECCCCCEEeeec--CCcCc-CcCcccccCc-EE-ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 67764 3467653 22000 0000000011 12 368887743221 1468999999988643
No 168
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=73.44 E-value=48 Score=33.33 Aligned_cols=183 Identities=15% Similarity=0.015 Sum_probs=89.1
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec----CcEEEEeCCCCCccCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD----GEYEIYDSLRNSWTRP 290 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----~~v~vy~s~t~~W~~~ 290 (468)
++++..... ....+||..|++.+.+...+. ..+.+.-|+ . .|+....+ ..+.++|..++.++.+
T Consensus 123 ~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG-----~-~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 123 AVVFTGATE-DRVALYALDGGGLRELARLPG-----FGFVSDIRG-----D-LIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp CEEEEEECS-SCEEEEEEETTEEEEEEEESS-----CEEEEEEET-----T-EEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred eEEEEecCC-CCceEEEccCCcEEEeecCCC-----ceEEECCCC-----C-EEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 355554433 356699999998777654221 223333341 1 33323333 2478889888887755
Q ss_pred CCCCCCcccCcccccccceEEECCEEEEEEcCCC--eEEEEECCCCeEEEeecCCCCCCCCceE--------EEECCeEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPE--GIVSYNMVTGVWKQFIIPTPLHLNDHTL--------AECGGRIM 360 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~--~i~~fD~~~~~w~~i~~P~p~~~~~~~l--------~~~~G~L~ 360 (468)
..-... .......-+|+..+...... .|..+|+.+++.. + +........... ..-+|+++
T Consensus 191 ~~~~~~--------~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 191 DSGEGS--------FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D-LELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp CCSSCE--------EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E-CCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred ecCCCc--------cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E-ccCCCcChhhhhhccccceeEcCCCcEE
Confidence 321110 01111112666544443333 6889999988876 3 222111000001 12367766
Q ss_pred EEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-CCCCeEEEEECCCCcEEE
Q 012227 361 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS-RQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 361 lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~-~~~~~l~~YD~~t~~w~~ 439 (468)
+..... ..+.+|.+ ++... .+. + ...-..+. ++.+++.... .....++.+|.++ +.+.
T Consensus 261 ~~~~~~----g~~~l~~~----g~~~~---~~~-------~-~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~~~~ 319 (582)
T 3o4h_A 261 VVARRE----GRSAVFID----GERVE---APQ-------G-NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-PLLE 319 (582)
T ss_dssp EEEEET----TEEEEEET----TEEEC---CCS-------S-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-EEEC
T ss_pred EEEEcC----CcEEEEEE----CCeec---cCC-------C-ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-ceEE
Confidence 655322 46788876 22111 111 1 01112233 5555543332 2345688888876 6655
Q ss_pred c
Q 012227 440 V 440 (468)
Q Consensus 440 v 440 (468)
+
T Consensus 320 l 320 (582)
T 3o4h_A 320 G 320 (582)
T ss_dssp C
T ss_pred E
Confidence 5
No 169
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=73.44 E-value=58 Score=30.15 Aligned_cols=148 Identities=14% Similarity=0.041 Sum_probs=79.7
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCc
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSW 287 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W 287 (468)
++..+|.|++.+....++.++++-......+...... . ..++.+|+ . ...+++... ...+++++.....=
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~--~--P~giavdp--~--~g~ly~td~~~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD--Q--PRAIALDP--S--SGFMYWTDWGEVPKIERAGMDGSSR 157 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--S--EEEEEEEG--G--GTEEEEEECSSSCEEEEEETTSCSC
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCC--C--ccEEEEeC--C--CCEEEEEecCCCCEEEEEEcCCCCe
Confidence 5556888888887777899999876554444321111 1 23444552 1 235665542 23477776643211
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGL 364 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~ 364 (468)
+.+. ..... ...++.+ +|.|||.......|.++|+....-..+ .... ...-..++..++.||+...
T Consensus 158 ~~~~--~~~l~-------~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~-~~~~-~~~P~glav~~~~lywtd~ 226 (318)
T 3sov_A 158 FIII--NSEIY-------WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV-VKGS-LPHPFALTLFEDILYWTDW 226 (318)
T ss_dssp EEEE--CSSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECSC-CSCEEEEEEETTEEEEEET
T ss_pred EEEE--ECCCC-------CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE-ecCC-CCCceEEEEeCCEEEEEec
Confidence 1110 00111 1224444 689999998778999999975443333 2111 0111345667888888642
Q ss_pred EeeCCccEEEEEEEecCC
Q 012227 365 LTKNAATCVCIWELQKMT 382 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~~ 382 (468)
. .. .|++++..+
T Consensus 227 ~----~~--~V~~~~~~~ 238 (318)
T 3sov_A 227 S----TH--SILACNKYT 238 (318)
T ss_dssp T----TT--EEEEEETTT
T ss_pred C----CC--eEEEEECCC
Confidence 1 12 566667643
No 170
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=73.39 E-value=60 Score=30.30 Aligned_cols=197 Identities=9% Similarity=0.013 Sum_probs=84.9
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-+++.......+.+||...+....+... ... ...+.+.+ ..-.++..+.++.+.+||..++.-...-.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~--v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKTGALLNVLNFH---RAP--IVSVKWNK----DGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCC---CSC--EEEEEECT----TSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeeccCC---Ccc--EEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 3554444444456799999333333344321 111 22333331 12244545556679999987665322111
Q ss_pred CCCCccc--------CcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEE
Q 012227 293 MPSNIKL--------PVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLV 362 (468)
Q Consensus 293 ~p~~~~~--------~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv 362 (468)
....... +.......-...-++. ++.+.....|..||+.+.+.... +.. +... ..+... +|+++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGK-LIG--HHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEE-ECC--CSSCEEEEEEETTTTEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeee-ecc--CCCceEEEEECCCCCEEEE
Confidence 1100000 0000011112223555 44444456799999987643222 111 1111 223323 5665554
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
+.. ...+.+|.+........ +.. ... ...-.++..++.+ +.. ...+.+.+||+.+++...
T Consensus 265 ~~~----d~~i~i~d~~~~~~~~~----~~~-----~~~-~i~~~~~~~~~~l-~~~--~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 265 ASD----DGTLRIWHGGNGNSQNC----FYG-----HSQ-SIVSASWVGDDKV-ISC--SMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp EET----TSCEEEECSSSBSCSEE----ECC-----CSS-CEEEEEEETTTEE-EEE--ETTSEEEEEETTTTEEEE
T ss_pred EcC----CCEEEEEECCCCccceE----ecC-----CCc-cEEEEEECCCCEE-EEE--eCCCcEEEEECCCCcEeE
Confidence 431 24678886554221111 110 000 1111223334433 222 235688899988776443
No 171
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=73.22 E-value=32 Score=35.12 Aligned_cols=120 Identities=22% Similarity=0.324 Sum_probs=64.9
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCC------CCCceEEEECCeEEEEEEEeeCCccEEEEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLH------LNDHTLAECGGRIMLVGLLTKNAATCVCIWEL 378 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~------~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~l 378 (468)
..+++.+|++|+.+... .+.++|.+++ .|+.- .+.+.. .....++..+|+||+... . . .|+.|
T Consensus 62 ~~P~v~~g~vyv~~~~~-~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-d----g--~l~Al 132 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-RLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-D----A--SVVAL 132 (582)
T ss_dssp CCCEEETTEEEEEETTT-EEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEEETTEEEEEET-T----T--EEEEE
T ss_pred eccEEECCEEEEEcCCC-CEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEEECCEEEEEeC-C----C--EEEEE
Confidence 34677999999987633 4999999765 58763 332211 112345667888887531 1 1 57777
Q ss_pred ecCC--CCeEEEEeeChhhhhcccCcceEEEEEec--CC--EEEEEeee---CCCCeEEEEECCCCcEEE
Q 012227 379 QKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGN--KG--LLMLSLRS---RQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 379 d~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~--~~--~I~~~~~~---~~~~~l~~YD~~t~~w~~ 439 (468)
|..+ ..|+.- +..... .+ ........... ++ .||+.... ...+.++.||+++++..+
T Consensus 133 D~~TG~~~W~~~--~~~~~~-~~-~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 133 NKNTGKVVWKKK--FADHGA-GY-TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp ESSSCCEEEEEE--CSCGGG-TC-BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred ECCCCCEEeeec--CCCCCc-Cc-ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 7653 468753 221110 00 00011122221 12 66553211 124689999999887444
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=72.15 E-value=54 Score=29.29 Aligned_cols=193 Identities=16% Similarity=0.072 Sum_probs=95.8
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~ 292 (468)
+..|++.+.....++++||.++ ...+.... ....++.+++ +.++++... ...+.+|+..+++.+.+..
T Consensus 39 g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~-----~~~~~l~~~~-----dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 39 RSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPS-----HHQNGHCLNK-----QGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp GTEEEEEEGGGTEEEEEETTSC-EEEEESSC-----SSEEEEEECT-----TCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEECCCC-eEEEECCC-----CCcceeeECC-----CCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 3335555555568999999988 55554321 1124455552 134554433 3469999988877654321
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEc-----------------CCCeEEEEECCCCeEEEeecCCCCCCCCceEE
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRS-----------------DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLA 353 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~-----------------~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~ 353 (468)
...... .. ....+.+ +|.+|+... ....|..||+. ++...+.-.. . ....++
T Consensus 108 ~~~~~~----~~-~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~-~~~gi~ 178 (296)
T 3e5z_A 108 SFEGKK----LN-SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR--V-KPNGLA 178 (296)
T ss_dssp EETTEE----CC-CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC--S-SEEEEE
T ss_pred ccCCCC----CC-CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC--C-CCccEE
Confidence 100000 00 1112333 688887521 12478889887 5555442111 0 111233
Q ss_pred EE-CCeEEEEEEEeeCCccEEEEEEEecCCCCe-EEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEE
Q 012227 354 EC-GGRIMLVGLLTKNAATCVCIWELQKMTLLW-KEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYN 431 (468)
Q Consensus 354 ~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W-~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD 431 (468)
.. +|+++ +... ....+.+|.++. ++.. .....+ .. .... ..-.++..+|.||+.. .+.|.+||
T Consensus 179 ~s~dg~~l-v~~~---~~~~i~~~~~~~-~g~~~~~~~~~-~~-~~~~----p~~i~~d~~G~l~v~~----~~~v~~~~ 243 (296)
T 3e5z_A 179 FLPSGNLL-VSDT---GDNATHRYCLNA-RGETEYQGVHF-TV-EPGK----TDGLRVDAGGLIWASA----GDGVHVLT 243 (296)
T ss_dssp ECTTSCEE-EEET---TTTEEEEEEECS-SSCEEEEEEEE-CC-SSSC----CCSEEEBTTSCEEEEE----TTEEEEEC
T ss_pred ECCCCCEE-EEeC---CCCeEEEEEECC-CCcCcCCCeEe-eC-CCCC----CCeEEECCCCCEEEEc----CCeEEEEC
Confidence 22 67776 4432 224566665552 3444 222222 10 0000 0112445566787754 36799999
Q ss_pred CCCCcEEEcc
Q 012227 432 VMSREWLKVP 441 (468)
Q Consensus 432 ~~t~~w~~v~ 441 (468)
++.+....+.
T Consensus 244 ~~g~~~~~~~ 253 (296)
T 3e5z_A 244 PDGDELGRVL 253 (296)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9877666653
No 173
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=71.99 E-value=24 Score=36.93 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=64.2
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCC--------CCCCceEEEECCeEEEEEEEeeCCccEEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPL--------HLNDHTLAECGGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~--------~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw 376 (468)
..+++.+|++|+.+.. ..|.++|..++ .|+.- .+.+. ......++..+|+||+... . . .|+
T Consensus 64 ~~P~v~~g~vyv~~~~-~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-d----g--~l~ 134 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPF-SVVYALDARDGRLIWKYD-PQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-D----G--RLE 134 (689)
T ss_dssp CCCEEETTEEEEECGG-GCEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T----S--EEE
T ss_pred ecCEEECCEEEEEcCC-CeEEEEECCCCceeEEEc-CCCCccccccccccCCCCccEEECCEEEEEcc-C----C--EEE
Confidence 3466789999997643 46999998765 67752 22221 0112345667888877531 1 1 466
Q ss_pred EEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcE
Q 012227 377 ELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREW 437 (468)
Q Consensus 377 ~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w 437 (468)
.+|.. +..|+.-............ ..+ .+ .++.||+..... ..+.++.||.++++.
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~--~sP--~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTIT--GAP--RV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCC--SCC--EE-ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred EEECCCCCEeeeecCcCCCCCCcccc--CCc--EE-ECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 66754 3467764321111100000 011 12 367887743221 246899999999873
No 174
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=71.87 E-value=59 Score=29.59 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=65.5
Q ss_pred eEEEEcCCCCceE-ecCCCC--cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcc
Q 012227 226 NFYVCNPLTQSFK-ELPARS--VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVS 302 (468)
Q Consensus 226 ~~~V~NP~T~~~~-~LP~~~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~ 302 (468)
.+.+||..+++.. .+.... ........+.+..+ .....-.++..+.++.+.+||..++.=.. .+...
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~------ 114 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD--SNTSHPLLAVAGSRGIIRIINPITMQCIK--HYVGH------ 114 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEEC--TTTCCEEEEEEETTCEEEEECTTTCCEEE--EEESC------
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccC--CCCCCCEEEEecCCCEEEEEEchhceEee--eecCC------
Confidence 6778887766543 222111 11112333444433 22212333333445669999987653211 11000
Q ss_pred cccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEE
Q 012227 303 LNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 303 ~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
...-..+.+ ++.+.+.+.....|..+|+.+++..........+.....-+.+ +|++.+++.. ...+.+|.
T Consensus 115 -~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d 189 (366)
T 3k26_A 115 -GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM----DHSLKLWR 189 (366)
T ss_dssp -CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred -CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC----CCCEEEEE
Confidence 001112223 5566666655668999999987655432111112222222222 4665554432 24678886
Q ss_pred Eec
Q 012227 378 LQK 380 (468)
Q Consensus 378 ld~ 380 (468)
+..
T Consensus 190 ~~~ 192 (366)
T 3k26_A 190 INS 192 (366)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 175
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=71.82 E-value=64 Score=29.96 Aligned_cols=145 Identities=11% Similarity=0.198 Sum_probs=71.2
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-.++.......+.+||..+++... +.. +.... ..+.+. +......++..+.++.+.+||..++.....
T Consensus 165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h~~~v--~~~~~~--~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-- 235 (354)
T 2pbi_B 165 SDMQILTASGDGTCALWDVESGQLLQSFHG---HGADV--LCLDLA--PSETGNTFVSGGCDKKAMVWDMRSGQCVQA-- 235 (354)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCE--EEEEEC--CCSSCCEEEEEETTSCEEEEETTTCCEEEE--
T ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCe--EEEEEE--eCCCCCEEEEEeCCCeEEEEECCCCcEEEE--
Confidence 34333344445678999998877543 221 11111 222232 222223444445567799999887653211
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKN 368 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~ 368 (468)
+... ...-.++.+ +|...+.++....|..||+.+..-..+ ............+.. +|++.+++..
T Consensus 236 ~~~h-------~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~~g~~--- 304 (354)
T 2pbi_B 236 FETH-------ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI-YSKESIIFGASSVDFSLSGRLLFAGYN--- 304 (354)
T ss_dssp ECCC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECTTSSEEEEEET---
T ss_pred ecCC-------CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCcccceeEEEEeCCCCEEEEEEC---
Confidence 0000 001112333 466556666667899999988754332 111111111122222 6777665542
Q ss_pred CccEEEEEEEe
Q 012227 369 AATCVCIWELQ 379 (468)
Q Consensus 369 ~~~~i~Vw~ld 379 (468)
...+.||.+.
T Consensus 305 -d~~i~vwd~~ 314 (354)
T 2pbi_B 305 -DYTINVWDVL 314 (354)
T ss_dssp -TSCEEEEETT
T ss_pred -CCcEEEEECC
Confidence 2478899553
No 176
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=71.32 E-value=29 Score=36.13 Aligned_cols=117 Identities=13% Similarity=0.201 Sum_probs=64.5
Q ss_pred cceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCC--------CCCceEEEECCeEEEEEEEeeCCccEEEEE
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLH--------LNDHTLAECGGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~--------~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw 376 (468)
..+++.+|++|+.+.. ..+.++|..++ .|+.- ...+.. .....++..+|+||+... . . .|+
T Consensus 60 ~~P~v~~g~vyv~~~~-~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d----g--~l~ 130 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW-SRVIAVDAASGKELWRYD-PEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-D----G--RLI 130 (668)
T ss_dssp CCCEEETTEEEEEEGG-GEEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-T----S--EEE
T ss_pred cCCEEECCEEEEECCC-CeEEEEECCCChhceEEC-CCCCccccccccccCCccceEEECCEEEEEcC-C----C--EEE
Confidence 3466789999998753 57999998765 57752 222111 112335667888876431 1 1 566
Q ss_pred EEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEE
Q 012227 377 ELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWL 438 (468)
Q Consensus 377 ~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~ 438 (468)
.||.. +..|+.-..-+.... ... ..+ .+ .++.||+..... ..+.++.||.++++..
T Consensus 131 alD~~tG~~~W~~~~~~~~~~~-~~~--~~P--~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAKPY-SIT--GAP--RV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp EEETTTCCEEEEEECSCTTSSC-BCC--SCC--EE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEECCCCCEeeeeccCCCCCcc-eec--CCC--EE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 77754 346776421110000 000 011 12 367887643221 1468999999988643
No 177
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=70.28 E-value=24 Score=34.01 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=15.9
Q ss_pred CCEEEEEEcCCCeEEEEECCCC
Q 012227 313 DGILYFMRSDPEGIVSYNMVTG 334 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~ 334 (468)
++.+++.+...+.|..||+.+.
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCS
T ss_pred CCCEEEEEeCCCeEEEEECCCC
Confidence 4556666666678999999865
No 178
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=70.15 E-value=64 Score=29.27 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=67.8
Q ss_pred CceEEEEEcCCceEEEEcCCCCc--eEecCCCCcC-CcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQS--FKELPARSVK-VWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTR 289 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~--~~~LP~~~~~-~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~ 289 (468)
+|-.++.......+.+||..+++ ...+...... ......+.+... ...+.+.++.+. ++.+.+||..++.=..
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA---YNQEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC---CC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec---cCCCCCEEEEEccCCeEEEEECccCceee
Confidence 44344444445679999998865 3333332111 111222222111 111223444444 4679999988754211
Q ss_pred CCCCCCCcccCcccccccceEEE-----CCEEEEEEcCCCeEEEEECCCCe----EEEeecCCCCCCCC-ceEEEE-CCe
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSV-----DGILYFMRSDPEGIVSYNMVTGV----WKQFIIPTPLHLND-HTLAEC-GGR 358 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~-----~G~lY~~~~~~~~i~~fD~~~~~----w~~i~~P~p~~~~~-~~l~~~-~G~ 358 (468)
...... .-..+.+ +|...+.+.....|..||+.+.. +...... .+... ..+... +|+
T Consensus 205 ~~~~~~----------~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 205 ETNIKN----------GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK--AHKSTVWQVRHLPQNR 272 (357)
T ss_dssp EEECSS----------CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE--CCSSCEEEEEEETTEE
T ss_pred ecCCCC----------ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC--CCcCCEEEEEECCCCC
Confidence 110000 1112222 45555556556678888876532 1111010 11111 223333 455
Q ss_pred EEEEEEEeeCCccEEEEEEEecC
Q 012227 359 IMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 359 L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
-+++.+.. ...+.||.++..
T Consensus 273 ~~l~~~~~---dg~i~iwd~~~~ 292 (357)
T 3i2n_A 273 ELFLTAGG---AGGLHLWKYEYP 292 (357)
T ss_dssp EEEEEEET---TSEEEEEEEECC
T ss_pred cEEEEEeC---CCcEEEeecCCC
Confidence 23333322 257899988753
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=68.70 E-value=50 Score=29.72 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=48.2
Q ss_pred eEEEEEEe-cCcEEEEeCCCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC-eEEEeec
Q 012227 266 YKILWVGC-DGEYEIYDSLRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG-VWKQFII 341 (468)
Q Consensus 266 ykVv~v~~-~~~v~vy~s~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~ 341 (468)
.++++.+. +..+.++|.++++ |+.-..-... .....+.-+|.+++ . ....+..||+..+ .|+. ..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--------~~~~~~~pdG~ilv-s-~~~~V~~~d~~G~~~W~~-~~ 73 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWE--------CNSVAATKAGEILF-S-YSKGAKMITRDGRELWNI-AA 73 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCC--------CCEEEECTTSCEEE-E-CBSEEEEECTTSCEEEEE-EC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCC--------CcCeEECCCCCEEE-e-CCCCEEEECCCCCEEEEE-cC
Confidence 35555544 3457888876654 7643210000 01112223788877 3 3457999999433 4543 33
Q ss_pred CCCCCCCCceEE-EECCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 342 PTPLHLNDHTLA-ECGGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 342 P~p~~~~~~~l~-~~~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
+.... ...+. ..+|+++++... ..-.|+.++..
T Consensus 74 ~~~~~--~~~~~~~~dG~~lv~~~~-----~~~~v~~vd~~ 107 (276)
T 3no2_A 74 PAGCE--MQTARILPDGNALVAWCG-----HPSTILEVNMK 107 (276)
T ss_dssp CTTCE--EEEEEECTTSCEEEEEES-----TTEEEEEECTT
T ss_pred CCCcc--ccccEECCCCCEEEEecC-----CCCEEEEEeCC
Confidence 31111 11112 237777765431 02367777764
No 180
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=68.25 E-value=67 Score=28.80 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=18.4
Q ss_pred CC-EEEEEEcCCCeEEEEECCCCeEE
Q 012227 313 DG-ILYFMRSDPEGIVSYNMVTGVWK 337 (468)
Q Consensus 313 ~G-~lY~~~~~~~~i~~fD~~~~~w~ 337 (468)
+| .+|+.......|..+|+.+.+..
T Consensus 44 dg~~l~v~~~~~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 44 GGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp TSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCCeE
Confidence 55 56777665678999999887654
No 181
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=66.58 E-value=75 Score=28.71 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=19.3
Q ss_pred ecCc-eEEEEEcCCceEEEEcCCCCceE
Q 012227 212 SAGG-LVCFLDIGHRNFYVCNPLTQSFK 238 (468)
Q Consensus 212 s~~G-Ll~~~~~~~~~~~V~NP~T~~~~ 238 (468)
+.+| .+++.......++++|+.|++..
T Consensus 51 s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 51 APDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 3444 56666665678999999988765
No 182
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=66.22 E-value=95 Score=31.94 Aligned_cols=191 Identities=9% Similarity=0.127 Sum_probs=90.2
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTR 289 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~ 289 (468)
+.+|-+++.......+.|||..+++... +.. +.... ..+.+.+ ..-.++..+.++.+.+||..... ...
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~---h~~~v--~~~~~s~----~~~~l~s~s~D~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVG---HTKDV--LSVAFSL----DNRQIVSASRDRTIKLWNTLGECKYTI 509 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCE--EEEEECT----TSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcceeEEeC---CCCCE--EEEEEeC----CCCEEEEEeCCCEEEEEECCCCcceee
Confidence 4466656666556789999998876542 221 11112 2333331 12234444556679999865332 211
Q ss_pred CCCCCCCcccCcccccccceEEE--CC--EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSV--DG--ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVG 363 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~--~G--~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~ 363 (468)
......+ ...-.++.+ ++ .+.+.++....|..+|+.+...... +. .+......+.+ +|++++.+
T Consensus 510 ~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-~~--~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 510 SEGGEGH-------RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-LA--GHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp CSSTTSC-------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCCC-------CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-Ec--CCCCCEEEEEEeCCCCEEEEE
Confidence 1100000 000112222 22 2333444556789999988765443 21 11111222222 67766655
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
.. ...+.||.+... +.+..+... ......++..++.++.. .. ...+.+||+++++...
T Consensus 580 ~~----Dg~i~iwd~~~~----~~~~~~~~~-------~~v~~~~~sp~~~~l~~-~~--~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 580 GK----DGVVLLWDLAEG----KKLYSLEAN-------SVIHALCFSPNRYWLCA-AT--EHGIKIWDLESKSIVE 637 (694)
T ss_dssp ET----TSBCEEEETTTT----EEEECCBCS-------SCEEEEEECSSSSEEEE-EE--TTEEEEEETTTTEEEE
T ss_pred eC----CCeEEEEECCCC----ceEEEecCC-------CcEEEEEEcCCCcEEEE-Ec--CCCEEEEECCCCCChh
Confidence 32 247889965432 233333211 01122233334444332 22 3468899998886543
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=65.71 E-value=74 Score=28.37 Aligned_cols=107 Identities=8% Similarity=-0.043 Sum_probs=50.5
Q ss_pred CC-EEEEEEcCCCeEEEEECC-CCeEEEee--cCCCCCC-C-CceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCe
Q 012227 313 DG-ILYFMRSDPEGIVSYNMV-TGVWKQFI--IPTPLHL-N-DHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLW 385 (468)
Q Consensus 313 ~G-~lY~~~~~~~~i~~fD~~-~~~w~~i~--~P~p~~~-~-~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W 385 (468)
+| .+|+.......|..||+. ++++.... ...+... . -..++. -+|+|++..... . .|.+++..+++-
T Consensus 186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~----~--~i~~~d~~~g~~ 259 (314)
T 1pjx_A 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS----S--HIEVFGPDGGQP 259 (314)
T ss_dssp CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT----T--EEEEECTTCBSC
T ss_pred CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC----C--EEEEEcCCCCcE
Confidence 35 577776556789999976 45432210 1111111 1 112333 268888765321 2 344556543332
Q ss_pred EEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCC
Q 012227 386 KEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSR 435 (468)
Q Consensus 386 ~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~ 435 (468)
.....++... ..-.++. +++.||+.. ...+.+..||++..
T Consensus 260 ~~~~~~~~~~--------~~~i~~~~dg~~l~v~~--~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 260 KMRIRCPFEK--------PSNLHFKPQTKTIFVTE--HENNAVWKFEWQRN 300 (314)
T ss_dssp SEEEECSSSC--------EEEEEECTTSSEEEEEE--TTTTEEEEEECSSC
T ss_pred eEEEeCCCCC--------ceeEEECCCCCEEEEEe--CCCCeEEEEeCCCC
Confidence 2222222110 1112233 344577643 23468999998764
No 184
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=65.54 E-value=85 Score=29.09 Aligned_cols=144 Identities=6% Similarity=-0.048 Sum_probs=70.3
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM 293 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~ 293 (468)
+|-+++.......+.+||..++....+............+. +.+ . .-.++..+.++.+.+||.....-..+..
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--~~~--~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 202 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVD--VSV--S--RQMLATGDSTGRLLLLGLDGHEIFKEKL- 202 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEE--EET--T--TTEEEEEETTSEEEEEETTSCEEEEEEC-
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEE--ECC--C--CCEEEEECCCCCEEEEECCCCEEEEecc-
Confidence 45555555555689999998776666554321111222233 331 1 1234444445679999974322111110
Q ss_pred CCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECCC----CeEEEeecCCCCCCCCceEEEE---CCeEEEEE
Q 012227 294 PSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVT----GVWKQFIIPTPLHLNDHTLAEC---GGRIMLVG 363 (468)
Q Consensus 294 p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~----~~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~ 363 (468)
. ...-..+.+ +|. +.+.+.....|..||+.+ ...... .. +.....-+.+ +|++++++
T Consensus 203 --h-------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 203 --H-------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-MP---HEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp --S-------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-EE---CSSCEEEEEECTTTSCEEEEE
T ss_pred --C-------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-ec---CCCceEEEEEcCCCCCEEEEE
Confidence 0 001112222 344 555555556889999986 443332 11 1111222222 56666655
Q ss_pred EEeeCCccEEEEEEEecC
Q 012227 364 LLTKNAATCVCIWELQKM 381 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~ 381 (468)
.. ...+.||.+...
T Consensus 270 ~~----d~~i~iwd~~~~ 283 (383)
T 3ei3_B 270 DQ----RNEIRVYSSYDW 283 (383)
T ss_dssp ES----SSEEEEEETTBT
T ss_pred cC----CCcEEEEECCCC
Confidence 32 257899976643
No 185
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=65.50 E-value=94 Score=29.48 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.......+.|||..+++... +.. +.... ..+.+.+ . .-.++..+.++.+.+||..+..- +..
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~---h~~~V--~~v~~~~--~--~~~l~sgs~D~~i~iwd~~~~~~--~~~ 187 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKG---HTDSV--QDISFDH--S--GKLLASCSADMTIKLWDFQGFEC--IRT 187 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECC---CSSCE--EEEEECT--T--SSEEEEEETTSCCCEEETTSSCE--EEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEec---cCCcE--EEEEEcC--C--CCEEEEEeCCCeEEEEeCCCCce--eEE
Confidence 34444444445679999998876542 222 11112 2333331 1 12344444466799999865432 111
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeC
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKN 368 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~ 368 (468)
+.... ..-.++.+ +|...+.++....|..+|+.++..... +.. +......+.. +|.+++.+..
T Consensus 188 ~~~h~-------~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-~~~--h~~~v~~~~~~~~g~~l~s~s~--- 254 (410)
T 1vyh_C 188 MHGHD-------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTG--HREWVRMVRPNQDGTLIASCSN--- 254 (410)
T ss_dssp CCCCS-------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-EEC--CSSCEEEEEECTTSSEEEEEET---
T ss_pred EcCCC-------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EeC--CCccEEEEEECCCCCEEEEEcC---
Confidence 11110 01112222 455555555667899999988754332 111 1111222222 5666555432
Q ss_pred CccEEEEEEEe
Q 012227 369 AATCVCIWELQ 379 (468)
Q Consensus 369 ~~~~i~Vw~ld 379 (468)
...+.||.+.
T Consensus 255 -D~~v~vwd~~ 264 (410)
T 1vyh_C 255 -DQTVRVWVVA 264 (410)
T ss_dssp -TSCEEEEETT
T ss_pred -CCeEEEEECC
Confidence 2468888554
No 186
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=65.13 E-value=25 Score=39.24 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=64.7
Q ss_pred EEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcc
Q 012227 219 FLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIK 298 (468)
Q Consensus 219 ~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~ 298 (468)
+.+...+.+.+||..+++....... +......+.+..+ .-.++..+.++.+.+|+..++...........
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~--h~~~v~~l~~s~d------g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-- 1046 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVG--HKKAVRHIQFTAD------GKTLISSSEDSVIQVWNWQTGDYVFLQAHQET-- 1046 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCC--CSSCCCCEEECSS------SSCEEEECSSSBEEEEETTTTEEECCBCCSSC--
T ss_pred EEEcCCCCEEEEEcCCCceeeeccc--CCCceEEEEECCC------CCEEEEEcCCCEEEEEECCCCceEEEecCCCc--
Confidence 3333445788888877765432221 1111122333211 12344444566799999988776543211110
Q ss_pred cCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEE
Q 012227 299 LPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 299 ~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw 376 (468)
.....+. ++.+.. +.....|..+|+.+++.... +..... .-..++. -+|++++++.. ...+.||
T Consensus 1047 -------v~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~~~~-~~~~~~-~v~~~~~s~d~~~l~s~s~----d~~v~iw 1112 (1249)
T 3sfz_A 1047 -------VKDFRLLQDSRLLS-WSFDGTVKVWNVITGRIERD-FTCHQG-TVLSCAISSDATKFSSTSA----DKTAKIW 1112 (1249)
T ss_dssp -------EEEEEECSSSEEEE-EESSSEEEEEETTTTCCCEE-EECCSS-CCCCEEECSSSSSCEEECC----SSCCCEE
T ss_pred -------EEEEEEcCCCcEEE-EECCCcEEEEECCCCceeEE-EcccCC-cEEEEEECCCCCEEEEEcC----CCcEEEE
Confidence 0111111 455443 33456888999987654322 111111 1112222 25665554432 2467888
Q ss_pred EEec
Q 012227 377 ELQK 380 (468)
Q Consensus 377 ~ld~ 380 (468)
.++.
T Consensus 1113 d~~~ 1116 (1249)
T 3sfz_A 1113 SFDL 1116 (1249)
T ss_dssp CSSS
T ss_pred ECCC
Confidence 6553
No 187
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=65.06 E-value=32 Score=31.94 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=69.7
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTRPG 291 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~~~ 291 (468)
-+|-.++.......+.+||..+++...+.....+.... ..+.+.+ +.-.++..+.++.+.+||..++. +..+.
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v--~~v~~sp----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV--KSVAWAP----SGNLLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE--EEEEECT----TSSEEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc--eEEEEeC----CCCEEEEEECCCeEEEEECCCCCCeEEEE
Confidence 34544444444557888887776544322211111122 2333332 12234444456679999986542 22111
Q ss_pred CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK 367 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~ 367 (468)
.+.... ..-..+.. +|.+.+.+.....|..||..++.|..+.. ...+.....-+.. +|++++.+..
T Consensus 145 ~~~~h~-------~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~-~~~h~~~v~~l~~sp~g~~l~s~s~-- 214 (345)
T 3fm0_A 145 VLNSHT-------QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT-LEGHESTVWSLAFDPSGQRLASCSD-- 214 (345)
T ss_dssp EECCCC-------SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred EecCcC-------CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE-ecCCCCceEEEEECCCCCEEEEEeC--
Confidence 111000 00111222 45555555555678889998887764311 1112122222222 5666554432
Q ss_pred CCccEEEEEEEe
Q 012227 368 NAATCVCIWELQ 379 (468)
Q Consensus 368 ~~~~~i~Vw~ld 379 (468)
..++.||...
T Consensus 215 --D~~v~iW~~~ 224 (345)
T 3fm0_A 215 --DRTVRIWRQY 224 (345)
T ss_dssp --TSCEEEEEEE
T ss_pred --CCeEEEeccc
Confidence 2578999764
No 188
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=63.75 E-value=81 Score=28.12 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=33.5
Q ss_pred ceEEEEEcCCceEEEEcCCCCce-------EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSF-------KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~-------~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
|-+++.....+.+.+||..+++- ..+-....... ....+.+. +......++..+.++.+.+||..++.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG--SLYSVKFA--PAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS--CEEEEEEC--CGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC--ceeEEEEc--CCCCCcEEEEecCCCcEEEecCCChH
Confidence 55555544456789999877531 11111111111 12233333 21112344444556679999987654
No 189
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=63.46 E-value=86 Score=28.34 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=69.9
Q ss_pred ceEEEEEcCCceEEEEcCCCCc--eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC--ccCC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQS--FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS--WTRP 290 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~--W~~~ 290 (468)
|-+++.......+.+||..+++ ...+... ......+.+...-.-..+.-.++..+.++.+.+||..++. ...+
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGH---KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCC---SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEec---ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 3444444444578999988775 2223221 1111122211000001122234444445679999988764 1111
Q ss_pred CCCCCCcccCcccccccceEE------ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE----CCeEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVS------VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC----GGRIM 360 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~------~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~----~G~L~ 360 (468)
........ .....+. -+|.+.+.+.....|..||+.+.+-... ..... .-..+... +|.++
T Consensus 157 ~~~~~~~~------~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~--~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 157 EPVQGENK------RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKN--GVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CCCTTSCC------CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSS--CEEEEEESCSSSSCCEE
T ss_pred cccCCCCC------CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCC--ceEEEEcCCCCCCCCEE
Confidence 11010000 0011121 3666666666667899999998875432 11111 11122222 46666
Q ss_pred EEEEEeeCCccEEEEEEEecC
Q 012227 361 LVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 361 lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
+++.. ...+.+|.+...
T Consensus 228 ~~~~~----dg~i~i~d~~~~ 244 (357)
T 3i2n_A 228 VATSL----EGKFHVFDMRTQ 244 (357)
T ss_dssp EEEES----TTEEEEEEEEEE
T ss_pred EEECC----CCeEEEEeCcCC
Confidence 55532 257888877653
No 190
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=63.27 E-value=1.4e+02 Score=30.86 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=62.4
Q ss_pred cCceEEEEEcCCceEEEEcCCCCc--eEecCCCCcCCc-----ceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQS--FKELPARSVKVW-----SRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN 285 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~-----~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~ 285 (468)
.+|.|++... ...++.+|+.|++ |+.-+....... .....+..++ +-+|++...++.+..+|..++
T Consensus 69 ~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~v~v~~~dg~l~AlDa~TG 141 (689)
T 1yiq_A 69 VDGVMYTTGP-FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW------KGKVYVGVLDGRLEAIDAKTG 141 (689)
T ss_dssp ETTEEEEECG-GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE------TTEEEEECTTSEEEEEETTTC
T ss_pred ECCEEEEEcC-CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE------CCEEEEEccCCEEEEEECCCC
Confidence 4677776654 2468888988887 443222111000 0000111122 136665555667888888766
Q ss_pred C--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCe--EEEe
Q 012227 286 S--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGV--WKQF 339 (468)
Q Consensus 286 ~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~--w~~i 339 (468)
+ |+.-...... ........+++.+|.+|+-... ...|.+||..|++ |+.-
T Consensus 142 ~~~W~~~~~~~~~----~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 142 QRAWSVDTRADHK----RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp CEEEEEECCSCTT----SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEeeeecCcCCCC----CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 4 8753210100 0011234566789999885432 3579999998764 7754
No 191
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=63.27 E-value=1.1e+02 Score=29.32 Aligned_cols=140 Identities=9% Similarity=0.031 Sum_probs=71.5
Q ss_pred EEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCC
Q 012227 217 VCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSN 296 (468)
Q Consensus 217 l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~ 296 (468)
.++.....+.+.+||..+++....-.. ..... ..+.+++ ..-.++..+.++.+.+||..++.-.. .+...
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v--~~~~~~~----~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h 351 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRI--YSTIYDH----ERKRCISASMDTTIRIWDLENGELMY--TLQGH 351 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC--CSSCE--EEEEEET----TTTEEEEEETTSCEEEEETTTTEEEE--EECCC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecC--CCCCE--EEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEE--EEeCC
Confidence 333334446799999988775432221 11122 2333331 11234444445679999987654211 11100
Q ss_pred cccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEE
Q 012227 297 IKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIW 376 (468)
Q Consensus 297 ~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw 376 (468)
...-..+..++...+.+.....|..+|+.+..-... .... ..........+|++.+++. + ..+.||
T Consensus 352 -------~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~--d---g~i~iw 417 (464)
T 3v7d_B 352 -------TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS-YHHT-NLSAITTFYVSDNILVSGS--E---NQFNIY 417 (464)
T ss_dssp -------SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE-EECT-TCCCEEEEEECSSEEEEEE--T---TEEEEE
T ss_pred -------CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeee-ecCC-CCccEEEEEeCCCEEEEec--C---CeEEEE
Confidence 001224455666656665667899999987653322 2111 1111222345777766553 2 478999
Q ss_pred EEec
Q 012227 377 ELQK 380 (468)
Q Consensus 377 ~ld~ 380 (468)
.++.
T Consensus 418 d~~~ 421 (464)
T 3v7d_B 418 NLRS 421 (464)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 6554
No 192
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=63.07 E-value=1.1e+02 Score=29.26 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=52.4
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-+++.+.....+.+||.-++....+.. +... ..++.+.+ .+.+.++..+.++.+.+||..+..-...-.
T Consensus 219 ~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~---h~~~--v~~v~~~p---~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 219 ASSRMVVTGDNVGNVILLNMDGKELWNLRM---HKKK--VTHVALNP---CCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp TTTTEEEEECSSSBEEEEESSSCBCCCSBC---CSSC--EEEEEECT---TCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred CCCCEEEEEeCCCcEeeeccCcceeEEEec---ccce--EEeeeecC---CCceEEEEecCcceeeEEecccccccceEE
Confidence 355555555555678999976544333222 1112 23334431 223344444446679999987654321100
Q ss_pred CCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCe
Q 012227 293 MPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
....... .-.++. -+|...+.+.....|..||+.+..
T Consensus 291 ~~~~h~~------~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 291 YSLPHRH------PVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp BCCBCSS------CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred Eeeeccc------cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 0000000 001111 156555555555678899988754
No 193
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=62.98 E-value=83 Score=29.12 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW 287 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W 287 (468)
.+++++|+.+++.+.+........ ....+..| .-+|+....+..+.++|..++.=
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~~~~~--~~~~~spd------g~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGRGDNT--FGGFLSPD------DDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CEEEEEETTTCEEEECCCSSCBCS--SSCEECTT------SSEEEEEETTTEEEEEETTTCCE
T ss_pred ceEEEEeCCCCceEEeeeCCCCCc--cceEEcCC------CCEEEEEeCCCeEEEEECCCCcc
Confidence 369999999999888765322111 01122111 12344444344577778776653
No 194
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=62.83 E-value=97 Score=28.68 Aligned_cols=159 Identities=10% Similarity=0.059 Sum_probs=71.7
Q ss_pred eEEEEEcCCceEEEEcCCCCc------eEecCCCCcC--CcceeEEEEEEcCCC-CCCCeEEEEEEecCcEEEEeCCC--
Q 012227 216 LVCFLDIGHRNFYVCNPLTQS------FKELPARSVK--VWSRVAVGMTLNGNS-TSSGYKILWVGCDGEYEIYDSLR-- 284 (468)
Q Consensus 216 Ll~~~~~~~~~~~V~NP~T~~------~~~LP~~~~~--~~~~~~~~~~~d~~~-~~~~ykVv~v~~~~~v~vy~s~t-- 284 (468)
-+++.......+.+||..+++ +..+...... ......+.+. +.. ..+.+.++..+.++.+.+||..+
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG--ASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE--CCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEe--eccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 444444445679999988877 5555543211 1222233332 000 11223255445566799998876
Q ss_pred ----CCccCCC---CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCC-CCC---CCCce
Q 012227 285 ----NSWTRPG---SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPT-PLH---LNDHT 351 (468)
Q Consensus 285 ----~~W~~~~---~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~-p~~---~~~~~ 351 (468)
+.-.... .+.............-..+.+ +| +.+.+.....|..||+.+.+.... +.. ..+ .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN-FESQHSMINNSNSIR 237 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE-EECCC---CCCCCEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE-EeccccccccCCccc
Confidence 3211100 100000000000001122223 46 555565667899999988765432 221 001 11122
Q ss_pred EEEE--CCeEEEEEEEeeCCccEEEEEEEe
Q 012227 352 LAEC--GGRIMLVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 352 l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld 379 (468)
-+.+ +|++++++... .....+.+|.+.
T Consensus 238 ~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~ 266 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDS-NSFGCITLYETE 266 (397)
T ss_dssp EEEECSSTTEEEEEEEE-TTEEEEEEEETT
T ss_pred eEEECCCCCEEEEEecC-CCCceEEEEECC
Confidence 2222 67776666533 111467888554
No 195
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=62.67 E-value=62 Score=33.17 Aligned_cols=118 Identities=20% Similarity=0.284 Sum_probs=63.5
Q ss_pred cceEEECCEEEEEEcCCCeEEEEEC-CCC--eEEEeecCCCCC--------CCCceEEE--ECCe----EEEEEEEeeCC
Q 012227 307 SQAVSVDGILYFMRSDPEGIVSYNM-VTG--VWKQFIIPTPLH--------LNDHTLAE--CGGR----IMLVGLLTKNA 369 (468)
Q Consensus 307 ~~~v~~~G~lY~~~~~~~~i~~fD~-~~~--~w~~i~~P~p~~--------~~~~~l~~--~~G~----L~lv~~~~~~~ 369 (468)
..+++.+|.+|+.......+.++|. .++ .|+.- ...+.. .....++. .+|+ ||+... +
T Consensus 56 ~tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~-~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----d 130 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDK-PKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----D 130 (599)
T ss_dssp SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----T
T ss_pred eccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEEC-CCCCccccccccccccccceEEEecCCcceeEEEEEcC----C
Confidence 4467789999998752357999999 665 67753 222110 11223455 5676 776431 1
Q ss_pred ccEEEEEEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEE
Q 012227 370 ATCVCIWELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWL 438 (468)
Q Consensus 370 ~~~i~Vw~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~ 438 (468)
. .++.||..+ ..|+.- ++.... . ....... .+ .+|.||+..... ..+.++.||.++++..
T Consensus 131 -g--~l~AlDa~TG~~~W~~~--~~~~~~-~-~~~~ssP-~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 131 -G--NVAALNAETGETVWKVE--NSDIKV-G-STLTIAP-YV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp -S--EEEEEETTTCCEEEEEE--CCCGGG-T-CBCCSCC-EE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred -C--EEEEEECCCCCEEEeec--CCCCCc-c-ceeecCC-EE-ECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 1 567777643 467753 221100 0 0000111 12 267887633211 2468999999988643
No 196
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=62.44 E-value=1.4e+02 Score=30.26 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=63.3
Q ss_pred cCceEEEEEcCCceEEEEcC-CCCc--eEecCCCCcCCcc-----eeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNP-LTQS--FKELPARSVKVWS-----RVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLR 284 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP-~T~~--~~~LP~~~~~~~~-----~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t 284 (468)
.+|.|++.......++.+|+ .|++ |+.-+........ ....+..++ +-+|++...++.+..+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~dg~l~alD~~t 134 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG------AGQIVKKQANGHLLALDAKT 134 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE------TTEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE------CCEEEEEeCCCEEEEEECCC
Confidence 47777776552346888999 8887 4432221110000 000011122 13666655566788889876
Q ss_pred C--CccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCC--eEEEe
Q 012227 285 N--SWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTG--VWKQF 339 (468)
Q Consensus 285 ~--~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~--~w~~i 339 (468)
+ .|+.-..-.. ........++..+|.+|+-... ...|.+||..++ .|+.-
T Consensus 135 G~~~W~~~~~~~~-----~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 135 GKINWEVEVCDPK-----VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp CCEEEEEECCCGG-----GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEecCCCCC-----ccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 6 4864211000 0001234566689999986642 468999999865 57653
No 197
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=62.42 E-value=88 Score=30.32 Aligned_cols=143 Identities=7% Similarity=0.052 Sum_probs=75.3
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-----cEEEEeCCCCCc
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-----EYEIYDSLRNSW 287 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-----~v~vy~s~t~~W 287 (468)
.+|.|++.+.. .++.++|+.+++...+... . ....++.+++ . .-.|++..... .+.+++. .+.|
T Consensus 148 ~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~-~----~~P~~ia~d~--~--G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 148 NHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSG-L----SKVRTICWTH--E--ADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp EEEEEEEEEBT-EEEEEEETTTTEEEEEECC-C----SCEEEEEECT--T--SSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CCCeEEEEeCC-CcEEEEECCCCEEEEEecC-C----CCcceEEEeC--C--CCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 46888888765 6899999998887765441 1 1123444442 1 12455554321 1344443 3444
Q ss_pred cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEe-ecCCCCCCCCceEEEE-CCe-EEE
Q 012227 288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQF-IIPTPLHLNDHTLAEC-GGR-IML 361 (468)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i-~~P~p~~~~~~~l~~~-~G~-L~l 361 (468)
.....+. . .. ...++.+ +|.||+.....+.|..||+.+.....+ ..+. ...-..++.. +|+ ||+
T Consensus 217 ~~~~~l~-~------~~-~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~--~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 217 KVITELT-K------GQ-NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD--SGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp CSEEEEE-E------CS-SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS--SSCCEEEEECTTSSEEEE
T ss_pred eeeeeec-c------CC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC--CCcceeEEEcCCCCEEEE
Confidence 3211110 0 01 1223444 689999887777899999998776333 2221 1112234433 666 777
Q ss_pred EEEEeeCCccEEEEEEEec
Q 012227 362 VGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 362 v~~~~~~~~~~i~Vw~ld~ 380 (468)
+.. ....|.++.++.
T Consensus 287 ~d~----~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVV----NQHYILRSDYDW 301 (430)
T ss_dssp EET----TTTEEEEEEEET
T ss_pred EEC----CCCEEEEEeCCc
Confidence 642 224445554553
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.57 E-value=60 Score=31.21 Aligned_cols=111 Identities=8% Similarity=0.063 Sum_probs=60.7
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe-EEEEEEEeeCCccEEEEEEEecCCC-CeEEEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR-IMLVGLLTKNAATCVCIWELQKMTL-LWKEVD 389 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~-L~lv~~~~~~~~~~i~Vw~ld~~~~-~W~~v~ 389 (468)
+|.||+.......|..+|+.++....+.... ....++.. +|+ ||++.. . ... .||.++.... ....+.
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~----~~~~ia~~~~g~~l~~~d~-~--~~~--~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGF----KGGKPAVTKDKQRVYSIGW-E--GTH--TVYVYMKASGWAPTRIG 211 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETC----CBCBCEECTTSSEEEEEBS-S--TTC--EEEEEEGGGTTCEEEEE
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccC----CCCceeEecCCCcEEEEec-C--CCc--eEEEEEcCCCceeEEee
Confidence 6899999877678999999988877653221 11123322 444 444321 1 111 6777776532 222332
Q ss_pred eeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 390 RMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
.+...... . ..-.++. .++.||+.. ..+.++.||++++....+
T Consensus 212 ~~~~~~~~---~--p~~iav~p~~g~lyv~d---~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 212 QLGSTFSG---K--IGAVALDETEEWLYFVD---SNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp ECCTTSCS---C--CCBCEECTTSSEEEEEC---TTCEEEEEETTTCCEEEE
T ss_pred eccchhcC---C--cEEEEEeCCCCeEEEEE---CCCcEEEEECCCCCEEEE
Confidence 22211000 0 0012233 368888732 246899999998876665
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=61.42 E-value=1.5e+02 Score=30.51 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=60.0
Q ss_pred CCEEEEEEcC---CCeEEEEECCCC---eEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCe
Q 012227 313 DGILYFMRSD---PEGIVSYNMVTG---VWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLW 385 (468)
Q Consensus 313 ~G~lY~~~~~---~~~i~~fD~~~~---~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W 385 (468)
++.+|+.+.. ...|..+|+.+. .|..+ .+......-..+... ++.|++..... ....||.++..+++
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~lv~~~~~~----g~~~l~~~~~~~g~- 370 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVRSNFLVLCYLHD----VKNTLQLHDLATGA- 370 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCEEEEEEEETTTEEEEEEEET----TEEEEEEEETTTCC-
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceec-cCCCCCCeEEEEEEEcCCEEEEEEEEC----CEEEEEEEECCCCC-
Confidence 5678887753 246999999875 47776 333211111123445 67776654321 24467776753333
Q ss_pred EEEEeeChhhhhcccCcceEEEEE--e-cCCEEEEEeeeC-CCCeEEEEECCCCc--EEEcc
Q 012227 386 KEVDRMPNIWCLDFYGKHVRMTCL--G-NKGLLMLSLRSR-QMNRLVTYNVMSRE--WLKVP 441 (468)
Q Consensus 386 ~~v~~mp~~~~~~~~~~~~~~~~~--~-~~~~I~~~~~~~-~~~~l~~YD~~t~~--w~~v~ 441 (468)
.+..+... . + .+..+ . .++.+++...+. ....++.||+.+++ .+.+.
T Consensus 371 -~~~~l~~~-~----~---~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 371 -LLKIFPLE-V----G---SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp -EEEEECCC-S----S---EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred -EEEecCCC-C----c---eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEee
Confidence 12223211 0 0 11122 2 345676644332 45689999999877 65543
No 200
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=60.88 E-value=88 Score=27.59 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=51.7
Q ss_pred ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEE
Q 012227 312 VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVD 389 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~ 389 (468)
-+|. ++.+.....|..||+.+.+-... +.. +... ..+... +|+|. .+.. ...+.+|.+.. .+-....
T Consensus 194 ~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~~~--~~~~i~~~~~~~~~~l~--~~~~---dg~v~iwd~~~--~~~~~~~ 262 (313)
T 3odt_A 194 DDGH-FISCSNDGLIKLVDMHTGDVLRT-YEG--HESFVYCIKLLPNGDIV--SCGE---DRTVRIWSKEN--GSLKQVI 262 (313)
T ss_dssp ETTE-EEEEETTSEEEEEETTTCCEEEE-EEC--CSSCEEEEEECTTSCEE--EEET---TSEEEEECTTT--CCEEEEE
T ss_pred CCCe-EEEccCCCeEEEEECCchhhhhh-hhc--CCceEEEEEEecCCCEE--EEec---CCEEEEEECCC--CceeEEE
Confidence 4677 44455566899999987654332 211 1111 122222 45432 2222 25788885443 3322222
Q ss_pred eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
..+.. ...-.++..++.++. . ...+.+..||++++++....
T Consensus 263 ~~~~~--------~i~~~~~~~~~~~~~-~--~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 263 TLPAI--------SIWSVDCMSNGDIIV-G--SSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp ECSSS--------CEEEEEECTTSCEEE-E--ETTSCEEEEESCGGGCCC--
T ss_pred eccCc--------eEEEEEEccCCCEEE-E--eCCCcEEEEeCCCCceeehh
Confidence 22111 111222333444432 2 23578999999998776543
No 201
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=60.85 E-value=1.1e+02 Score=28.82 Aligned_cols=65 Identities=6% Similarity=-0.017 Sum_probs=34.4
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
.++..+.++.+.+||..++.-...-..+.. ...-.++.+ +|.+.+.+.....|..||+.+.+...
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPR-------HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGG-------GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCC-------CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 344344456799999877542111000000 001122333 56666666666679999998876543
No 202
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=60.19 E-value=1.2e+02 Score=28.74 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=54.8
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
+|-+++.......+.+||..+++... +.... ... ....+.+++ ....++..+.++.+.+||..++.-...-.
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~--~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSP-RHG--AVSSICIDE----ECCVLILGTTRGIIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCG-GGC--CEEEEEECT----TSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC-CCC--ceEEEEECC----CCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence 45555555555689999998877543 22210 111 223334442 12344444445669999998754321100
Q ss_pred CCCCcccCcccccccceEE------ECCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 293 MPSNIKLPVSLNFRSQAVS------VDGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~------~~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
.+... .-..+. -+|.+.+.+.....|..+|+.+.+...
T Consensus 254 ~~~~~--------~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 254 FGDHA--------PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp CTTCE--------EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred cCCCC--------ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence 00000 001111 134445555555678899998776433
No 203
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=59.07 E-value=38 Score=30.83 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=21.0
Q ss_pred ECCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 312 VDGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 312 ~~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
.++.+|+.+.....|..+|+.+++...
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~ 35 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYK 35 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 467788877777789999999887643
No 204
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=58.40 E-value=1.6e+02 Score=29.76 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=22.9
Q ss_pred ecCCEEEEEeee--CCCCeEEEEECCCCcEEEc
Q 012227 410 GNKGLLMLSLRS--RQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 410 ~~~~~I~~~~~~--~~~~~l~~YD~~t~~w~~v 440 (468)
..|..+|+...+ ...+.|++||.+|.+..+.
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 367789886533 2467899999999987654
No 205
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=58.16 E-value=1.2e+02 Score=28.09 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=30.2
Q ss_pred EEEEEEecCcEEEEeCCCCC------ccCCCCCCCCcccCcccccccceEE----ECCEE-EEEEcCCCeEEEEECCC
Q 012227 267 KILWVGCDGEYEIYDSLRNS------WTRPGSMPSNIKLPVSLNFRSQAVS----VDGIL-YFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~------W~~~~~~p~~~~~~~~~~~~~~~v~----~~G~l-Y~~~~~~~~i~~fD~~~ 333 (468)
.++..+.++.+.+|+..++. +......+.... ......-... -+|.. .+.+.....|..||+.+
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK---KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGG---GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccC---CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 34444446679999987665 444332110000 0000111122 24555 55555556788888876
No 206
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=57.80 E-value=1.5e+02 Score=29.29 Aligned_cols=142 Identities=13% Similarity=0.017 Sum_probs=69.4
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe--cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE--LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~--LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~ 291 (468)
+.+|+........+.+||..+++... +.. ..... ..+.+.+ +.-.++..+.++.+.+|+..++.-...
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~v--~~~~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~- 525 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP---LRAKP--SYISISP----SETYIAAGDVMGKILLYDLQSREVKTS- 525 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSC---CSSCE--EEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEC-
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCC---ccCce--EEEEECC----CCCEEEEcCCCCeEEEeeCCCCcceeE-
Confidence 33444333315679999998877642 222 11122 2333331 112333334456799999876543211
Q ss_pred CCCCCcccCcccccccceEEE------------CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCC-ceEE-EEC
Q 012227 292 SMPSNIKLPVSLNFRSQAVSV------------DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLND-HTLA-ECG 356 (468)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~v~~------------~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~-~~l~-~~~ 356 (468)
+..... ..-..+.+ +|.+.+.+.....|..||+.+. ..... +. .+... ..+. .-+
T Consensus 526 -~~~~h~------~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~--~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 526 -RWAFRT------SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LN--AHKDGVNNLLWETP 595 (615)
T ss_dssp -CSCCCS------SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TT--SSTTCEEEEEEEET
T ss_pred -eecCCC------CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hh--cCccceEEEEEcCC
Confidence 111000 01112223 6777776766678999999885 22221 21 11111 2222 247
Q ss_pred CeEEEEEEEeeCCccEEEEEEEec
Q 012227 357 GRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 357 G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
|+ .+.+ .. ...+.||.++.
T Consensus 596 ~~-l~s~-~~---d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSS-GA---DACIKRWNVVL 614 (615)
T ss_dssp TE-EEEE-ET---TSCEEEEEEC-
T ss_pred CC-eEEe-cC---CceEEEEeeec
Confidence 78 3333 22 25789998764
No 207
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=57.69 E-value=1.1e+02 Score=27.50 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=87.6
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
+.+|-+++.......+.+||..+++... +.. +.... ..+.+.+ . .-.++..+.++.+.+||..++ +...
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~---h~~~v--~~~~~~~--~--~~~l~sgs~D~~v~lWd~~~~-~~~~ 133 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---HPDYI--RSIAVHP--T--KPYVLSGSDDLTVKLWNWENN-WALE 133 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCE--EEEEECS--S--SSEEEEEETTSCEEEEEGGGT-TEEE
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEEEEeC---CCCcE--EEEEEcC--C--CCEEEEECCCCeEEEEECCCC-cchh
Confidence 3445445555555689999998887542 222 11112 2333332 1 123444444667999997654 1111
Q ss_pred CCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE----CCeEEEEE
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC----GGRIMLVG 363 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~----~G~L~lv~ 363 (468)
..+... ...-.++.+ ++.+.+.+.....|..+|+.+..-... +... .......+.+ ++.+.+.+
T Consensus 134 ~~~~~h-------~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 134 QTFEGH-------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LTTG-QERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp EEECCC-------CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE-EECC-CTTCEEEEEECCSTTCCEEEEE
T ss_pred hhhccc-------CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce-eccC-CcCcEEEEEEEEcCCCCEEEEE
Confidence 100000 001112333 345555555566888899865432111 1111 1111122222 44554443
Q ss_pred EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
. . ...+.||.+... +.+..+... .. .+...++..++.+++.. ...+.+..||+.+.+....
T Consensus 205 s-~---D~~i~iWd~~~~----~~~~~~~~h-----~~-~v~~~~~~p~~~~l~s~--s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 205 S-D---DLTIKIWDYQTK----SCVATLEGH-----MS-NVSFAVFHPTLPIIISG--SEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp E-T---TSEEEEEETTTT----EEEEEEECC-----SS-CEEEEEECSSSSEEEEE--ETTSCEEEEETTTCCEEEE
T ss_pred c-C---CCeEEEEeCCCC----ccceeeCCC-----CC-CEEEEEECCCCCEEEEE--cCCCeEEEEECCCCceeee
Confidence 2 2 257899965432 233333110 00 01112233233333332 2356788999988765543
No 208
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=57.34 E-value=1.3e+02 Score=28.42 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=53.0
Q ss_pred EEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC
Q 012227 268 ILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL 345 (468)
Q Consensus 268 Vv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~ 345 (468)
+++++.++.+.+||..++.-...-...... ..-.++.+ +|.+.+.+.....|..+|+.+++.... .. .
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~-------~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-~~--~ 187 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPG-------EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-MT--S 187 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTT-------CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC--C
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCC-------CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-Ee--C
Confidence 566777778999999887654321111110 00112222 577767776667899999998865432 21 1
Q ss_pred CCCCceEEEECCeEEEEEEEeeCCccEEEEEE
Q 012227 346 HLNDHTLAECGGRIMLVGLLTKNAATCVCIWE 377 (468)
Q Consensus 346 ~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ 377 (468)
+......+..++.+.+.+.. ...+.+|.
T Consensus 188 h~~~v~~~s~~~~~l~sgs~----d~~i~~~d 215 (420)
T 4gga_A 188 HSARVGSLSWNSYILSSGSR----SGHIHHHD 215 (420)
T ss_dssp CSSCEEEEEEETTEEEEEET----TSEEEEEE
T ss_pred CCCceEEEeeCCCEEEEEeC----CCceeEee
Confidence 22222334456776655432 24556663
No 209
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=56.98 E-value=4.6 Score=25.56 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=19.7
Q ss_pred hhhchhhhccChHHHHHHHHhcCCh
Q 012227 112 EAMEQEIWKEFPEDLYEAVIARLPI 136 (468)
Q Consensus 112 ~~~~~~~w~~LP~DLl~~IL~RLp~ 136 (468)
+..++..++.||.||..+||+--..
T Consensus 14 ~~VD~eVF~~LP~dIQ~Ells~~~~ 38 (48)
T 2kwv_A 14 EGVDQEVFKQLPADIQEEILSGKSR 38 (48)
T ss_dssp TTCCGGGTTTSCHHHHHHHTTCCCS
T ss_pred CCCCHHHHHHCcHHHHHHHHhcchH
Confidence 3456778899999999999985443
No 210
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=56.70 E-value=1.4e+02 Score=28.68 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=71.5
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCC
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTP 344 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p 344 (468)
.++..+.++.+.+||.+++.-.. .... . ...-.++.. +|...+.+...+.|..||+..+.-..+..+..
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~~~-~~~~-~-------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~ 234 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVKVC-ATLP-S-------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPF 234 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEEEE-EEEC-G-------GGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTT
T ss_pred EEEEEECCCeEEEEEcCCCccee-eccC-C-------CCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcc
Confidence 44445556779999988762110 0000 0 001112222 56665666666689999998444444433322
Q ss_pred CCC----CCceEEEECCeEEEEEEEeeC----CccEEEEEEEecCC----CCeEEEEeeChhhhhcccCcceEEEEEecC
Q 012227 345 LHL----NDHTLAECGGRIMLVGLLTKN----AATCVCIWELQKMT----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNK 412 (468)
Q Consensus 345 ~~~----~~~~l~~~~G~L~lv~~~~~~----~~~~i~Vw~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~ 412 (468)
... ....+.-..+..+++.....+ ....+.+|.+.... ..|.....+...... -......+..+.+.
T Consensus 235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~l~dw 313 (434)
T 2oit_A 235 YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT-ERQHHYYLSYIEEW 313 (434)
T ss_dssp CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS-SSCCCEEEEEEGGG
T ss_pred cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCC-CcCcceeeehhccC
Confidence 111 111222234445554443332 12457888876532 344443222100000 00011112223455
Q ss_pred CEEEEEeeeCCCCeEEEEECCCCcE
Q 012227 413 GLLMLSLRSRQMNRLVTYNVMSREW 437 (468)
Q Consensus 413 ~~I~~~~~~~~~~~l~~YD~~t~~w 437 (468)
+++++.......-.++..+-+...|
T Consensus 314 ~l~~v~s~~s~dv~vl~~~~~~~~~ 338 (434)
T 2oit_A 314 DLVLAASAASTEVSILARQSDQINW 338 (434)
T ss_dssp TEEEEEETTCSBCEEEEECTTSSCE
T ss_pred CEEEEecCCCCceeEEEecCCCCcc
Confidence 6666643333333555555444456
No 211
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=55.32 E-value=1.5e+02 Score=28.38 Aligned_cols=61 Identities=8% Similarity=-0.016 Sum_probs=33.3
Q ss_pred CEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227 314 GILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAECGGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
|.+.+.+.....|..||+.+......... .+... ..+...+|++++.+.. ...+.||.+..
T Consensus 210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~sd~~~l~s~~~----d~~v~vwd~~~ 271 (450)
T 2vdu_B 210 HQFIITSDRDEHIKISHYPQCFIVDKWLF--GHKHFVSSICCGKDYLLLSAGG----DDKIFAWDWKT 271 (450)
T ss_dssp CEEEEEEETTSCEEEEEESCTTCEEEECC--CCSSCEEEEEECSTTEEEEEES----SSEEEEEETTT
T ss_pred CcEEEEEcCCCcEEEEECCCCceeeeeec--CCCCceEEEEECCCCEEEEEeC----CCeEEEEECCC
Confidence 66666666666899999887653322111 11111 1222127777765542 25789996543
No 212
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=54.28 E-value=1.4e+02 Score=27.75 Aligned_cols=150 Identities=6% Similarity=-0.075 Sum_probs=73.3
Q ss_pred ceEEEEEcCCceEEEEcCCCCceEecCCCCcC--CcceeEEEEEEcCCCCCCCeEEEEEEecC---cEEEEeCCCCCccC
Q 012227 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVK--VWSRVAVGMTLNGNSTSSGYKILWVGCDG---EYEIYDSLRNSWTR 289 (468)
Q Consensus 215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~d~~~~~~~ykVv~v~~~~---~v~vy~s~t~~W~~ 289 (468)
+-+++.......+.+||..+++....-..... ........+.+.+ .+...++..+.++ .+.+||..++.-.
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~~~~i~~~d~~~~~~~- 253 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP---KNSTRVATATGSDNDPSILIWDLRNANTP- 253 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS---SCTTEEEEEECCSSSCCCCEEETTSTTSC-
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC---CCCCEEEEEECCCCCceEEEEeCCCCCCC-
Confidence 55555555566899999988765432221110 0011123333431 1223444444455 7999998875311
Q ss_pred CCCCC-CCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CC-eEEEEE
Q 012227 290 PGSMP-SNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GG-RIMLVG 363 (468)
Q Consensus 290 ~~~~p-~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G-~L~lv~ 363 (468)
+..+. .. ...-..+.+ +|.+.+.+.....|..||+.+.+-... ++... ..-..+.-. +| ++++.+
T Consensus 254 ~~~~~~~~-------~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~-~~~~~-~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 254 LQTLNQGH-------QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ-FPARG-NWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp SBCCCSCC-------SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE-EECSS-SCCCCEEECTTCTTEEEEC
T ss_pred cEEeecCc-------cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee-ecCCC-CceEEEEECCCCCCEEEEE
Confidence 11111 00 001112333 566666666667899999987654332 21111 111122222 44 555544
Q ss_pred EEeeCCccEEEEEEEecC
Q 012227 364 LLTKNAATCVCIWELQKM 381 (468)
Q Consensus 364 ~~~~~~~~~i~Vw~ld~~ 381 (468)
.. ...+.||.++..
T Consensus 325 ~~----d~~i~iw~~~~~ 338 (416)
T 2pm9_A 325 SF----DNKIEVQTLQNL 338 (416)
T ss_dssp CS----SSEEEEEESCCC
T ss_pred ec----CCcEEEEEccCC
Confidence 21 357899987654
No 213
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=53.46 E-value=1.1e+02 Score=27.57 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=40.5
Q ss_pred EEEEEEecCcEEEEeCC-CCCccCCCCCCCCcccCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCe-EEEeecCC
Q 012227 267 KILWVGCDGEYEIYDSL-RNSWTRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGV-WKQFIIPT 343 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~-t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~-w~~i~~P~ 343 (468)
.|++....+.+..||.. ...|+.....+ .....+.. +|.+|+ +.....|..||..... |.. ..+.
T Consensus 109 ~l~v~t~~~~l~~~d~~g~~~~~~~~~~~----------~~~~~~~~~~g~l~v-gt~~~~l~~~d~~g~~~~~~-~~~~ 176 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTDGTEKWRFKTKKA----------IYATPIVSEDGTIYV-GSNDNYLYAINPDGTEKWRF-KTND 176 (330)
T ss_dssp EEEEECTTSEEEEECTTSCEEEEEECSSC----------CCSCCEECTTSCEEE-ECTTSEEEEECTTSCEEEEE-ECSS
T ss_pred EEEEEecCCEEEEEcCCCCEEEEEcCCCc----------eeeeeEEcCCCEEEE-EcCCCEEEEECCCCCEeEEE-ecCC
Confidence 44433334568888876 34465432110 01122323 677665 4444689999998333 443 2322
Q ss_pred CCCCCCceEEE-ECCeEEEEE
Q 012227 344 PLHLNDHTLAE-CGGRIMLVG 363 (468)
Q Consensus 344 p~~~~~~~l~~-~~G~L~lv~ 363 (468)
. . ...++. .+|.|++..
T Consensus 177 ~--~-~~~~~~d~~g~l~v~t 194 (330)
T 3hxj_A 177 A--I-TSAASIGKDGTIYFGS 194 (330)
T ss_dssp C--C-CSCCEECTTCCEEEES
T ss_pred C--c-eeeeEEcCCCEEEEEe
Confidence 1 1 122333 367776643
No 214
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=53.09 E-value=2e+02 Score=29.36 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=34.2
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeE
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVW 336 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w 336 (468)
.++..+.++.+.+||..++.-... +..+. ..-..+.+ +|.+.+.++....|..+|+.+.+-
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~--~~~h~-------~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRST--LAGHT-------GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEE--ECCCS-------SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEE--EcCCC-------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 455445566799999876542211 10000 01112222 566666666667899999988764
No 215
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=53.04 E-value=2e+02 Score=29.31 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=51.0
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCC-CeEEEEeeChh-hhhcc
Q 012227 324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTL-LWKEVDRMPNI-WCLDF 399 (468)
Q Consensus 324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~-~W~~v~~mp~~-~~~~~ 399 (468)
..|..+|+.+++...+..... ......-+.. +|+..++.... .......|+.++..++ ....+..-... +.. .
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~-~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~-~ 311 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEP-KEKFLTNLSWSPDENILYVAEVN-RAQNECKVNAYDAETGRFVRTLFVETDKHYVE-P 311 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSC-TTCEEEEEEECTTSSEEEEEEEC-TTSCEEEEEEEETTTCCEEEEEEEEECSSCCC-C
T ss_pred eEEEEEECCCCceEeeccCCC-CceeEeeEEEECCCCEEEEEEeC-CCCCeeEEEEEECCCCceeeEEEEccCCCeEC-c
Confidence 358889999887665422111 1111112222 67644444322 2223446666676555 55544321111 100 0
Q ss_pred cCcceEEEEEec--CCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227 400 YGKHVRMTCLGN--KGLLMLSLRSRQMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 400 ~~~~~~~~~~~~--~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~ 442 (468)
. ..+ .+.- +|.+++.........++.+|...+..+.+..
T Consensus 312 ~---~~~-~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 312 L---HPL-TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp C---SCC-EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred c---CCc-eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 0 001 2222 4443332222223567788877777777643
No 216
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=52.99 E-value=1.5e+02 Score=27.66 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=72.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCC-c-eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQ-S-FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~-~-~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~ 289 (468)
+.+|-+++.......+.+||..+. + ...+... ......+. +.+ +...++..+.++.+.+||..++.-..
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h---~~~v~~v~--~~p----~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH---EGDINSVK--FFP----DGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC---SSCCCEEE--ECT----TSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCc---CCCeEEEE--Eec----CCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 335656666655668999997532 2 2222221 11122233 331 12344444456679999988764211
Q ss_pred CCCCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCeEEEeecCC-CCCCCC-ceEEEE-CCeEEEEEE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPT-PLHLND-HTLAEC-GGRIMLVGL 364 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~-p~~~~~-~~l~~~-~G~L~lv~~ 364 (468)
.-........ .. ......+. -+|.+.+.+.....|..+|..+.+........ ..+... ..+... +|++++.+.
T Consensus 286 ~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 286 VYNREPDRND-NE-LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp EECCCCSSSC-CS-SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred Eecccccccc-cc-cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 1000000000 00 00011222 26776666766678999999876543321111 111122 223332 677655442
Q ss_pred EeeCCccEEEEEEEec
Q 012227 365 LTKNAATCVCIWELQK 380 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~ 380 (468)
....+.||.+..
T Consensus 364 ----~D~~i~iW~~~~ 375 (380)
T 3iz6_a 364 ----WDKNLKIWAFSG 375 (380)
T ss_dssp ----TTSCEEEEECCS
T ss_pred ----CCCCEEEEecCC
Confidence 235789997764
No 217
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=52.92 E-value=1.8e+02 Score=28.70 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=50.3
Q ss_pred cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCce
Q 012227 274 DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHT 351 (468)
Q Consensus 274 ~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~ 351 (468)
++.+.+|+..++.... ....... ..-..+.+ +|.+.+.+.....|..||+.+.+-... +... +.....
T Consensus 466 d~~i~~~~~~~~~~~~-~~~~~~~-------~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~-h~~~v~ 535 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF-DLKTPLR-------AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS-RWAF-RTSKIN 535 (615)
T ss_dssp TSCEEEEETTEEEEEE-ECSSCCS-------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC-CSCC-CSSCEE
T ss_pred CCeEEEEECCCccccc-cccCCcc-------CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE-eecC-CCCcee
Confidence 5679999988765421 1111110 01112333 677666666667899999988765432 2110 222222
Q ss_pred EEEE------------CCeEEEEEEEeeCCccEEEEEEEec
Q 012227 352 LAEC------------GGRIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 352 l~~~------------~G~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
-+.+ +|++.+++.. ...+.||.++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~ 572 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSL----DTNIFIYSVKR 572 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEET----TSCEEEEESSC
T ss_pred EEEEcCccccccccccCCCEEEEEcC----CCcEEEEECCC
Confidence 2333 5777665532 24789997764
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=52.17 E-value=1.5e+02 Score=28.30 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=60.1
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCC----------CCCCCC-ceEEEE--CCeEEEEEEEeeC---CccEEEEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPT----------PLHLND-HTLAEC--GGRIMLVGLLTKN---AATCVCIW 376 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~----------p~~~~~-~~l~~~--~G~L~lv~~~~~~---~~~~i~Vw 376 (468)
+|+++|+..+ ..+.++|+.++.-..+ -+. ...... ..++.. +++||+....... ....-+||
T Consensus 237 dG~~~~vs~~-g~V~v~d~~~~~~~v~-~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 237 AGRLVWPTYT-GKIHQIDLSSGDAKFL-PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTEEEEEBTT-SEEEEEECTTSSCEEC-CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCcEEEEeCC-CEEEEEECCCCcceee-cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 7888887754 5799999977643221 010 000011 123333 5788876542211 11235899
Q ss_pred EEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCC--EEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 377 ELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKG--LLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 377 ~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~--~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
++|.. +++.+.+++...- . ..+ .+..++ .+|... ...+.+.+||..+++..+
T Consensus 315 viD~~--t~kv~~~i~vg~~--~----~~l-avs~D~~~~ly~tn--~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 315 VLDAK--TGERLAKFEMGHE--I----DSI-NVSQDEKPLLYALS--TGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEETT--TCCEEEEEEEEEE--E----CEE-EECSSSSCEEEEEE--TTTTEEEEEETTTCCEEE
T ss_pred EEECC--CCeEEEEEECCCC--c----ceE-EECCCCCeEEEEEc--CCCCeEEEEECCCCcEEE
Confidence 99984 4555555542210 0 012 233333 455532 335789999999887543
No 219
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=51.32 E-value=99 Score=29.92 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=58.4
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEE-ECCe-EEEEEEEeeCCccEEEEEEEecCCCCeEEEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAE-CGGR-IMLVGLLTKNAATCVCIWELQKMTLLWKEVD 389 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~-~~G~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~ 389 (468)
+|.||+.... ..|..||+.++....+ .+ ....+ .++. -+|+ ||+..... . .....+..++.. ..|....
T Consensus 149 ~g~Lyv~d~~-~~I~~id~~~~~v~~~-~~---~~~~P~~ia~d~~G~~lyvad~~~-~-~~~~~v~~~~~~-g~~~~~~ 220 (430)
T 3tc9_A 149 HNHLYLVGEQ-HPTRLIDFEKEYVSTV-YS---GLSKVRTICWTHEADSMIITNDQN-N-NDRPNNYILTRE-SGFKVIT 220 (430)
T ss_dssp EEEEEEEEBT-EEEEEEETTTTEEEEE-EC---CCSCEEEEEECTTSSEEEEEECCS-C-TTSEEEEEEEGG-GTSCSEE
T ss_pred CCeEEEEeCC-CcEEEEECCCCEEEEE-ec---CCCCcceEEEeCCCCEEEEEeCCC-C-cccceEEEEeCC-Cceeeee
Confidence 4899998865 6899999999888776 33 11222 2332 2566 77665321 1 112234444432 3343111
Q ss_pred eeChhhhhcccCcceEEEEEec-CCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227 390 RMPNIWCLDFYGKHVRMTCLGN-KGLLMLSLRSRQMNRLVTYNVMSREWLK 439 (468)
Q Consensus 390 ~mp~~~~~~~~~~~~~~~~~~~-~~~I~~~~~~~~~~~l~~YD~~t~~w~~ 439 (468)
.++. +.. ..-.++.. ++.||+... ..++++.||+++++...
T Consensus 221 ~l~~-----~~~--p~giavdp~~g~lyv~d~--~~~~V~~~~~~~~~~~~ 262 (430)
T 3tc9_A 221 ELTK-----GQN--CNGAETHPINGELYFNSW--NAGQVFRYDFTTQETTP 262 (430)
T ss_dssp EEEE-----CSS--CCCEEECTTTCCEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eecc-----CCC--ceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCcEEE
Confidence 1211 000 00123333 678877532 34689999999887633
No 220
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=50.68 E-value=1.5e+02 Score=27.03 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=57.7
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceE--ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCcc-
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFK--ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWT- 288 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~--~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~- 288 (468)
+-+|.+++.+...+.+.+||..+++.. .+... +.... ..+.+.+ +... ++.++++.+.+||.++..=.
T Consensus 179 ~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v--~~l~fs~----~g~~-l~s~~~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 179 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVD--EEAKI--KEVKFAD----NGYW-MVVECDQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCC--TTSCE--EEEEECT----TSSE-EEEEESSBEEEEETTSSTTCB
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCCCCccEEecc--CCCCE--EEEEEeC----CCCE-EEEEeCCeEEEEEcCCCCcce
Confidence 446766666666678999999988754 34330 11122 2333432 1233 33444668999998765321
Q ss_pred CCCCCCCCcccCcccccccceEEE--CCEEEEEEcC-CCeEEEEEC--CCCeEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSD-PEGIVSYNM--VTGVWKQ 338 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~-~~~i~~fD~--~~~~w~~ 338 (468)
.+...... ..+ .....+.+ +|.+.+.+.. ...+..||. ....|..
T Consensus 250 ~~~~~~~~-~~~----~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 250 AYPTYTIP-EFK----TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp SSCCCBC----------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred eecccccc-ccc----ccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 11110000 000 01112333 4665555443 567888877 4567876
No 221
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=49.97 E-value=2.2e+02 Score=28.93 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=62.6
Q ss_pred cCceEEEEEcCCceEEEEcC-CCCc--eEecCCCCcCCc-----ceeEEEEEE--cCCCCCCCeEEEEEEecCcEEEEeC
Q 012227 213 AGGLVCFLDIGHRNFYVCNP-LTQS--FKELPARSVKVW-----SRVAVGMTL--NGNSTSSGYKILWVGCDGEYEIYDS 282 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP-~T~~--~~~LP~~~~~~~-----~~~~~~~~~--d~~~~~~~ykVv~v~~~~~v~vy~s 282 (468)
.+|.|++.......++.+|+ .|++ |+.-+....... ....-+..+ + .....-+|++...+..+..+|.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~--~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPG--DGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECC--CSSSCCEEEEECTTSEEEEEET
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEec--CCcceeEEEEEcCCCEEEEEEC
Confidence 36777776542346888888 7876 443332211000 000111222 2 1111123665555566888887
Q ss_pred CCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEc-----CCCeEEEEECCCC--eEEEe
Q 012227 283 LRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRS-----DPEGIVSYNMVTG--VWKQF 339 (468)
Q Consensus 283 ~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~-----~~~~i~~fD~~~~--~w~~i 339 (468)
.+++ |+.-.. .. . ........+++.+|++|+-.. ....|.+||..++ .|+.-
T Consensus 139 ~TG~~~W~~~~~--~~-~--~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 139 ETGETVWKVENS--DI-K--VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TTCCEEEEEECC--CG-G--GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEeecCC--CC-C--ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 7664 874211 10 0 000123456678999987543 2468999999875 57654
No 222
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=49.84 E-value=1.7e+02 Score=27.56 Aligned_cols=69 Identities=6% Similarity=0.027 Sum_probs=39.4
Q ss_pred eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee---------------C
Q 012227 358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS---------------R 422 (468)
Q Consensus 358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~---------------~ 422 (468)
+|+++.. .....+++||.++......+.+..+....+... ..+ .+..+|.+|+.... .
T Consensus 128 ~L~Vvnh--~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~p----ND~-~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 128 YLLVVNH--PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSV----NDI-VAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEEEC--STTCCEEEEEEEETTTTEEEEEEEECCTTCSSE----EEE-EEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEEEC--CCCCCeEEEEEEECCCCEEEEEeccccCCCCCC----ceE-EEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 4666543 223578999999987777777766654322111 122 23346676664221 0
Q ss_pred CCCeEEEEECC
Q 012227 423 QMNRLVTYNVM 433 (468)
Q Consensus 423 ~~~~l~~YD~~ 433 (468)
..+.++.||+.
T Consensus 201 ~~g~vyr~d~~ 211 (355)
T 3sre_A 201 AWSFVTYYSPN 211 (355)
T ss_dssp CCEEEEEECTT
T ss_pred CccEEEEEECC
Confidence 23578899884
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=49.80 E-value=59 Score=29.42 Aligned_cols=113 Identities=6% Similarity=-0.087 Sum_probs=57.4
Q ss_pred CEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227 314 GILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP 392 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp 392 (468)
+.+||.+.....|..||.. +....+..+.. ....++. -+|+|++... ... .|+.++.. ++.+.+....
T Consensus 57 ~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~---~~~gl~~d~dG~l~v~~~----~~~--~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 57 RTLVWSDLVGRRVLGWRED-GTVDVLLDATA---FTNGNAVDAQQRLVHCEH----GRR--AITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp TEEEEEETTTTEEEEEETT-SCEEEEEESCS---CEEEEEECTTSCEEEEET----TTT--EEEEECTT-SCEEEEECEE
T ss_pred CEEEEEECCCCEEEEEeCC-CCEEEEeCCCC---ccceeeECCCCCEEEEEC----CCC--EEEEECCC-CCEEEEEecc
Confidence 3589998777789999984 44554433221 1112222 2788776431 112 35555654 5554442211
Q ss_pred hhhhhcccCcceEEEEEecCCEEEEEee---e------------CCCCeEEEEECCCCcEEEcc
Q 012227 393 NIWCLDFYGKHVRMTCLGNKGLLMLSLR---S------------RQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~---~------------~~~~~l~~YD~~t~~w~~v~ 441 (468)
... .+.. ..-.++..+|.||+... . .....|+.||+++++++.+.
T Consensus 126 ~~~--~~~~--~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 126 AGK--RLNS--PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TTE--ECSC--CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CCC--ccCC--CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 110 0000 01123445677776311 0 01257999999888877653
No 224
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=49.47 E-value=1.6e+02 Score=27.10 Aligned_cols=145 Identities=13% Similarity=0.177 Sum_probs=68.6
Q ss_pred eEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE----CCEEEEEEcCCCeEEEEECCCCeEEEeec
Q 012227 266 YKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV----DGILYFMRSDPEGIVSYNMVTGVWKQFII 341 (468)
Q Consensus 266 ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~----~G~lY~~~~~~~~i~~fD~~~~~w~~i~~ 341 (468)
..++..+.++.+.+||..++.-... +... ...-..+.+ +|.+.+.+.....|..+|+.+.+.... +
T Consensus 167 ~~l~t~s~D~~v~lwd~~~~~~~~~--~~~h-------~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~ 236 (354)
T 2pbi_B 167 MQILTASGDGTCALWDVESGQLLQS--FHGH-------GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-F 236 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEE--EECC-------SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-E
T ss_pred CEEEEEeCCCcEEEEeCCCCeEEEE--EcCC-------CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-e
Confidence 3566556677799999887653211 0000 000011212 345555555566899999988765432 2
Q ss_pred CCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEe
Q 012227 342 PTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL 419 (468)
Q Consensus 342 P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~ 419 (468)
. .+.....-+.+ +|.+++.+.. ...+.+|.+... ..+..+..... .. ......+..++.+++..
T Consensus 237 ~--~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~----~~~~~~~~~~~--~~--~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 237 E--THESDVNSVRYYPSGDAFASGSD----DATCRLYDLRAD----REVAIYSKESI--IF--GASSVDFSLSGRLLFAG 302 (354)
T ss_dssp C--CCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTT----EEEEEECCTTC--CS--CEEEEEECTTSSEEEEE
T ss_pred c--CCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCC----cEEEEEcCCCc--cc--ceeEEEEeCCCCEEEEE
Confidence 1 11122222333 5666555432 257889965432 12222211100 00 01112233334443322
Q ss_pred eeCCCCeEEEEECCCCc
Q 012227 420 RSRQMNRLVTYNVMSRE 436 (468)
Q Consensus 420 ~~~~~~~l~~YD~~t~~ 436 (468)
...+.+.+||+.+++
T Consensus 303 --~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 303 --YNDYTINVWDVLKGS 317 (354)
T ss_dssp --ETTSCEEEEETTTCS
T ss_pred --ECCCcEEEEECCCCc
Confidence 235679999987765
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=48.16 E-value=1.5e+02 Score=26.49 Aligned_cols=196 Identities=10% Similarity=0.087 Sum_probs=89.6
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~ 292 (468)
+..|++.+.....++.+++ +++...+.... ....++..++ +.++++... ...+.+|+.. ++.+.+..
T Consensus 56 g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~-----~~~~gl~~d~-----dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 56 QRTLVWSDLVGRRVLGWRE-DGTVDVLLDAT-----AFTNGNAVDA-----QQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp GTEEEEEETTTTEEEEEET-TSCEEEEEESC-----SCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CCEEEEEECCCCEEEEEeC-CCCEEEEeCCC-----CccceeeECC-----CCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 3345556655567888998 66654433211 1224455552 234554332 2458888875 55443321
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEE----c-------------CCCeEEEEECCCCeEEEeecCCCCCCCCceEE
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMR----S-------------DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLA 353 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~----~-------------~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~ 353 (468)
..... ..+ ....+.+ +|.+|+.. . ....|..||+.++++..+. .. . ....++
T Consensus 124 ~~~~~----~~~-~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~--~-~p~gl~ 194 (305)
T 3dr2_A 124 RYAGK----RLN-SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL--D-HPNGLA 194 (305)
T ss_dssp EETTE----ECS-CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE--S-SEEEEE
T ss_pred ccCCC----ccC-CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC--C-CCcceE
Confidence 10000 000 0112223 68888742 1 1246899999888777652 11 1 111233
Q ss_pred EE-CCe-EEEEEEEee-CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEE
Q 012227 354 EC-GGR-IMLVGLLTK-NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTY 430 (468)
Q Consensus 354 ~~-~G~-L~lv~~~~~-~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~Y 430 (468)
.. +|+ ||++..... .....+.+|.++. +........... . .+. ..-.++..+|.||+.. ...|.+|
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~--~~l~~~~~~~~~--~--~~~-pdgi~~d~~G~lwv~~----~~gv~~~ 263 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRD--GALHDRRHFASV--P--DGL-PDGFCVDRGGWLWSSS----GTGVCVF 263 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEET--TEEEEEEEEECC--S--SSC-CCSEEECTTSCEEECC----SSEEEEE
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecC--CCccCCeEEEEC--C--CCC-CCeEEECCCCCEEEec----CCcEEEE
Confidence 32 565 665542110 0013444444443 222111111000 0 000 0012344456676642 2469999
Q ss_pred ECCCCcEEEcc
Q 012227 431 NVMSREWLKVP 441 (468)
Q Consensus 431 D~~t~~w~~v~ 441 (468)
|++.+....+.
T Consensus 264 ~~~g~~~~~~~ 274 (305)
T 3dr2_A 264 DSDGQLLGHIP 274 (305)
T ss_dssp CTTSCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99877776664
No 226
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=47.45 E-value=86 Score=30.46 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-----cCcEEEEeCCCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-----DGEYEIYDSLRNS 286 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-----~~~v~vy~s~t~~ 286 (468)
+.+|.|++.+.. .++.++||.+++...+.. ......++.++ +..+ +++... ...+..++. .+.
T Consensus 150 s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-----~~~~P~giavd--~dG~---lyVad~~~~~~~~gv~~~~~-~~~ 217 (433)
T 4hw6_A 150 SNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-----NIGQCADVNFT--LNGD---MVVVDDQSSDTNTGIYLFTR-ASG 217 (433)
T ss_dssp TTTCEEEEECBT-SCEEEEETTTTEEEEECC-----CCSCEEEEEEC--TTCC---EEEEECCSCTTSEEEEEECG-GGT
T ss_pred cCCCEEEEEeCC-CCEEEEECCCCEEEEeec-----CCCCccEEEEC--CCCC---EEEEcCCCCcccceEEEEEC-CCC
Q ss_pred cc---CCCCCCCCcccCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCeE-EEeecCCCCCCCCceEEEECCe-EE
Q 012227 287 WT---RPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGVW-KQFIIPTPLHLNDHTLAECGGR-IM 360 (468)
Q Consensus 287 W~---~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~w-~~i~~P~p~~~~~~~l~~~~G~-L~ 360 (468)
|. .++..... ..-++.- +|.||+.......|..||+.+.+. ..+.............+.-+|+ ||
T Consensus 218 ~~~~~~~~~~~~P---------~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 218 FTERLSLCNARGA---------KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp TCCEEEEEECSSB---------CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred eeccccccccCCC---------CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Q ss_pred EEEEEeeCCccEEEEEEEe
Q 012227 361 LVGLLTKNAATCVCIWELQ 379 (468)
Q Consensus 361 lv~~~~~~~~~~i~Vw~ld 379 (468)
++..... .|++++
T Consensus 289 vad~~~~------~I~~~~ 301 (433)
T 4hw6_A 289 IIYNGKH------CIYRVD 301 (433)
T ss_dssp EEETTTT------EEEEEE
T ss_pred EEeCCCC------EEEEEe
No 227
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=46.97 E-value=1.6e+02 Score=26.24 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=19.7
Q ss_pred ecCc-eEEEEEcCCceEEEEcCCCCceE
Q 012227 212 SAGG-LVCFLDIGHRNFYVCNPLTQSFK 238 (468)
Q Consensus 212 s~~G-Ll~~~~~~~~~~~V~NP~T~~~~ 238 (468)
+.+| .+++.......+.++|+.+++..
T Consensus 42 s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 42 APGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred cCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence 3344 67676666678999999998765
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=46.96 E-value=12 Score=35.79 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=19.1
Q ss_pred eEEECCEEEEEEcCCCeEEEEECCCC--eEEE
Q 012227 309 AVSVDGILYFMRSDPEGIVSYNMVTG--VWKQ 338 (468)
Q Consensus 309 ~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~ 338 (468)
+++.+|.+|+-+. ...|.++|..++ .|+.
T Consensus 5 P~v~~~~v~~gs~-dg~v~a~d~~tG~~~W~~ 35 (369)
T 2hz6_A 5 VTLPETLLFVSTL-DGSLHAVSKRTGSIKWTL 35 (369)
T ss_dssp ---CTTEEEEEET-TSEEEEEETTTCCEEEEE
T ss_pred CeeeCCEEEEEcC-CCEEEEEECCCCCEEEEe
Confidence 4556788887664 358999998765 5654
No 229
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=46.18 E-value=1.9e+02 Score=27.04 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=81.9
Q ss_pred eecCceEEEEEcCCceEEEEcCCCCceEec--CCCCc-CCcceeEEEEEE---cCCCCCCCeEEEEEEe-----------
Q 012227 211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKEL--PARSV-KVWSRVAVGMTL---NGNSTSSGYKILWVGC----------- 273 (468)
Q Consensus 211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~L--P~~~~-~~~~~~~~~~~~---d~~~~~~~ykVv~v~~----------- 273 (468)
...+|.+++.+-....+.++||.++....+ |.... ........|+.. |+ . .+++++..
T Consensus 21 d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~---grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 21 DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--S---KRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--C---CEEEEEEEETTTTCTTSCC
T ss_pred cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--C---CcEEEEEcccccccccccc
Confidence 345788888887777899999987655444 22110 112234467777 52 1 45554322
Q ss_pred ---cCcEEEEeCC---CC--CccCCCCCCCCccc--C-cc-cccccceEEE--CCEEEEEEcCC-CeEEEEECCCCeEEE
Q 012227 274 ---DGEYEIYDSL---RN--SWTRPGSMPSNIKL--P-VS-LNFRSQAVSV--DGILYFMRSDP-EGIVSYNMVTGVWKQ 338 (468)
Q Consensus 274 ---~~~v~vy~s~---t~--~W~~~~~~p~~~~~--~-~~-~~~~~~~v~~--~G~lY~~~~~~-~~i~~fD~~~~~w~~ 338 (468)
...+..||.. ++ .|.. .++....- + .. ......-+.+ +|.+|+.+... ..|+.+|+....-..
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~--dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSV--NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEE--ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEe--cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 2348899976 33 2321 11100000 0 00 0001222333 69999987766 789999998664332
Q ss_pred e--ecCCCCCC-CCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 339 F--IIPTPLHL-NDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 339 i--~~P~p~~~-~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
. ..|..... ....++.. +|+++++.... . +++++|..
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~----g--~L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGP----R--ALTAFDVS 214 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSS----S--SEEEEECS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCC----C--eEEEEcCC
Confidence 2 12222222 12355655 68777765321 2 46666654
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=46.17 E-value=12 Score=35.67 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=30.8
Q ss_pred eEEEEEEecCcEEEEeCCCC--CccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEE
Q 012227 266 YKILWVGCDGEYEIYDSLRN--SWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWK 337 (468)
Q Consensus 266 ykVv~v~~~~~v~vy~s~t~--~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~ 337 (468)
-+|++...++.+..+|..++ .|+.-. . . ....++..+|.+|+.+.....|.++|..++ .|.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~-~--------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--D-P--------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--C-C--------SCCCC-----CCEEECTTTCCEEEC-----CCSEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--C-C--------ceecceEcCCCEEEEeCCCCEEEEEECCCCceeee
Confidence 45555555566888887655 476432 1 1 123345567878877655567999998654 454
No 231
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=44.36 E-value=2e+02 Score=26.79 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=66.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCceEe-cCCCCc--CCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSV--KVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~--~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
+|-+++.......+.+||..+++... +..... .........+.+.+ +...++..+.++.+.+||..+..-...
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~----~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR----DGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT----TSSEEEEEETTSEEEEEEC--------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC----CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 56555555555679999998876543 221100 00111123333431 122344444466799999765432111
Q ss_pred CCCCCCcccCcccccc---cceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-------CC
Q 012227 291 GSMPSNIKLPVSLNFR---SQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-------GG 357 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~---~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-------~G 357 (468)
...+............ -..+.+ +|...+.++....|..+|..+.+-... +.. +.... .++.. +|
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~-l~~--h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-LQG--HRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE-EEC--CSSCEEEEEECSSCTTCTTC
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-ECC--CCCCEEEEEecCCcCcCCCC
Confidence 0000000000000000 011222 344444444556788999988764332 211 11111 12222 35
Q ss_pred eEEEEEEEeeCCccEEEEEEEec
Q 012227 358 RIMLVGLLTKNAATCVCIWELQK 380 (468)
Q Consensus 358 ~L~lv~~~~~~~~~~i~Vw~ld~ 380 (468)
.+++.+. . ...+.||.++.
T Consensus 371 ~~l~sgs-~---Dg~i~iW~~~~ 389 (393)
T 1erj_A 371 NVFATGS-G---DCKARIWKYKK 389 (393)
T ss_dssp EEEEEEE-T---TSEEEEEEEEE
T ss_pred CEEEEEC-C---CCcEEECcccc
Confidence 6555443 2 25889998764
No 232
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=44.08 E-value=2.9e+02 Score=28.56 Aligned_cols=142 Identities=12% Similarity=0.053 Sum_probs=76.3
Q ss_pred cEEEEeCCCC--C-ccCCCCCCCCcccCcccccccceE-EECCEEEEEEcC---CCeEEEEECCC--CeEEEeecCCCCC
Q 012227 276 EYEIYDSLRN--S-WTRPGSMPSNIKLPVSLNFRSQAV-SVDGILYFMRSD---PEGIVSYNMVT--GVWKQFIIPTPLH 346 (468)
Q Consensus 276 ~v~vy~s~t~--~-W~~~~~~p~~~~~~~~~~~~~~~v-~~~G~lY~~~~~---~~~i~~fD~~~--~~w~~i~~P~p~~ 346 (468)
.+.++|..++ . |+.+..-... ....+ .-++.||+.... ...|..+|+.+ ..|..+ +|....
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~---------~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~ 364 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKA---------QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-VPESKD 364 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSS---------CEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-ECCCSS
T ss_pred eEEEEECCCCCCcccEEecCCCCc---------eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE-ecCCCC
Confidence 4777787766 5 7665321111 01112 246778887642 34699999988 578877 443321
Q ss_pred CCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE---ecCCEEEEEeeeC-
Q 012227 347 LNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL---GNKGLLMLSLRSR- 422 (468)
Q Consensus 347 ~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~---~~~~~I~~~~~~~- 422 (468)
. -..+...++.|++..... ...+||.++.... .+..+...- .+ .+..+ .+++.|++...+.
T Consensus 365 ~-l~~~~~~~~~lv~~~~~d----g~~~l~~~~~~g~---~~~~l~~~~----~~---~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 365 N-LESVGIAGNRLFASYIHD----AKSQVLAFDLDGK---PAGAVSLPG----IG---SASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp E-EEEEEEEBTEEEEEEEET----TEEEEEEEETTSC---EEEECBCSS----SC---EEEEEECCBTCSCEEEEEEETT
T ss_pred e-EEEEEEECCEEEEEEEEC----CEEEEEEEeCCCC---ceeeccCCC----Ce---EEEEeecCCCCCEEEEEEcCCC
Confidence 1 112334478877655432 3557888775322 222222100 00 11122 1455566544332
Q ss_pred CCCeEEEEECCCCcEEEccC
Q 012227 423 QMNRLVTYNVMSREWLKVPG 442 (468)
Q Consensus 423 ~~~~l~~YD~~t~~w~~v~~ 442 (468)
....++.||+.+++.+.+..
T Consensus 430 ~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 430 QPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp EEEEEEEEETTTTEEEECSC
T ss_pred CCCEEEEEECCCCcEEEEec
Confidence 35679999999999887754
No 233
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=42.81 E-value=3.1e+02 Score=28.46 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=71.0
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~ 289 (468)
....+|-|.+......-++.+||.++++..+....... .....++..|. +..| +++...++..|++.++.++.
T Consensus 478 ~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~d~-----~g~l-Wigt~~Gl~~~~~~~~~~~~ 550 (758)
T 3ott_A 478 IPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTG-EKSPNYLLCDE-----DGLL-WVGFHGGVMRINPKDESQQS 550 (758)
T ss_dssp EECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCG-GGCEEEEEECT-----TSCE-EEEETTEEEEECC--CCCCB
T ss_pred EEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCC-CcccceEEECC-----CCCE-EEEecCceEEEecCCCceEE
Confidence 33446666652222345889999999988764321111 11122344441 2233 45666679999999888765
Q ss_pred CCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVG 363 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~ 363 (468)
... . .++. ......+.-+|.|++-+ . .+|..||+.+.++....+|.. .....+.. .+|.|++-+
T Consensus 551 ~~~--~--gl~~--~~i~~i~~~~g~lWi~t-~-~Gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~l~fG~ 615 (758)
T 3ott_A 551 ISF--G--SFSN--NEILSMTCVKNSIWVST-T-NGLWIIDRKTMDARQQNMTNK--RFTSLLFDPKEDCVYLGG 615 (758)
T ss_dssp CCC--C--C-----CCEEEEEEETTEEEEEE-S-SCEEEEETTTCCEEEC--CCC--CCSEEEEETTTTEEEEEC
T ss_pred ecc--c--CCCc--cceEEEEECCCCEEEEC-C-CCeEEEcCCCceeEEecCCCC--ceeeeEEECCCCcEEEec
Confidence 521 0 1111 11112223478776554 3 479999999999876544322 11111222 278888743
No 234
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=42.46 E-value=6.7 Score=21.36 Aligned_cols=8 Identities=75% Similarity=0.725 Sum_probs=6.2
Q ss_pred hhHHHHHH
Q 012227 3 ELAMLRQL 10 (468)
Q Consensus 3 ~~~~~~~~ 10 (468)
-||||||.
T Consensus 21 llamlrqh 28 (30)
T 2l3i_A 21 LLAMLRQH 28 (30)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 37999984
No 235
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=41.97 E-value=2.3e+02 Score=26.69 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=56.7
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS 292 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~ 292 (468)
.+|-+++.......+.+||..+++....-. .+... ...+.+.+ +.-.++..+.++.+.+||..++.-...
T Consensus 160 ~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--~h~~~--V~~v~~~p----~~~~l~s~s~D~~i~~wd~~~~~~~~~-- 229 (410)
T 1vyh_C 160 HSGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHN--VSSVSIMP----NGDHIVSASRDKTIKMWEVQTGYCVKT-- 229 (410)
T ss_dssp TTSSEEEEEETTSCCCEEETTSSCEEECCC--CCSSC--EEEEEECS----SSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEEc--CCCCC--EEEEEEeC----CCCEEEEEeCCCeEEEEECCCCcEEEE--
Confidence 455555555555678999998776543221 11111 22333331 122445445566799999877642110
Q ss_pred CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
+.... .....+.. +|.+.+.++....|..+|+.+.....
T Consensus 230 ~~~h~-------~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 230 FTGHR-------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270 (410)
T ss_dssp EECCS-------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EeCCC-------ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 00000 00111222 56666666666678889988776543
No 236
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=41.97 E-value=2.1e+02 Score=26.37 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=55.5
Q ss_pred ecCceEEEEEcCCceEEEEcCCC----C-ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLT----Q-SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T----~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
+.+|-+++.......+.+||..+ . ....+.... .....+. +. +. +...++..+.++.+.+||..++.
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~---~~v~~~~--~~--~~-~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS---SSVKTVK--FN--AK-QDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS---SCCCEEE--EC--SS-STTBEEEECSSSCEEBCBTTTTS
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCc---cceEEEE--Ec--CC-CCCEEEEEcCCCeEEEEECCCCc
Confidence 34554444444456799999987 2 333333211 1122233 33 11 12334444446679999987664
Q ss_pred ------cc-CCCCCCCCcccCcccccccceEEE--C-CEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 287 ------WT-RPGSMPSNIKLPVSLNFRSQAVSV--D-GILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 287 ------W~-~~~~~p~~~~~~~~~~~~~~~v~~--~-G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
-. ........ ...-..+.+ + +.+.+.+.....|..+|+.+.+...
T Consensus 148 ~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSS-------VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp SCTTTCCCBCCCCSCCS-------SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred cccccccccccccccCC-------CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence 11 11100000 001122333 2 4566666666679999999876544
No 237
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=41.80 E-value=3.2e+02 Score=28.34 Aligned_cols=191 Identities=17% Similarity=0.200 Sum_probs=101.9
Q ss_pred eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC
Q 012227 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~ 289 (468)
+.-.+|.|.+.... .++++|+.|.++.. +..... ... ..+..+ +.. ++++...++..|+..+++...
T Consensus 69 ~~d~~g~lWigT~~--Gl~~yd~~~~~f~~-~~~~~~-~~i--~~i~~~------~g~-lWigt~~Gl~~~~~~~~~~~~ 135 (758)
T 3ott_A 69 VIIDNTYLYMGTDN--GILVYNYRADRYEQ-PETDFP-TDV--RTMALQ------GDT-LWLGALNGLYTYQLQSRKLTS 135 (758)
T ss_dssp EEETTTEEEEEETT--EEEEEETTTTEECC-CSCCCC-SCE--EEEEEE------TTE-EEEEETTEEEEEETTTCCEEE
T ss_pred EEcCCCcEEEEeCC--CeEEEeCCCCEEEC-cccCCC-ceE--EEEEec------CCc-EEEEcCCcceeEeCCCCeEEE
Confidence 44567877776643 58999999987765 211111 111 112111 123 445555578899988877654
Q ss_pred CCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC---ceEEEE-CC-eEEEE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND---HTLAEC-GG-RIMLV 362 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~---~~l~~~-~G-~L~lv 362 (468)
....... ++. . .-..++. +|.+++-+ . .++..||..++++..+..|....... ..+.+- +| .|++.
T Consensus 136 ~~~~~~~--l~~--~-~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig 208 (758)
T 3ott_A 136 FDTRRNG--LPN--N-TIYSIIRTKDNQIYVGT-Y-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG 208 (758)
T ss_dssp ECHHHHC--CSC--S-CEEEEEECTTCCEEEEE-T-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred eccCCCC--cCC--C-eEEEEEEcCCCCEEEEe-C-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE
Confidence 3110000 000 0 1112333 56766544 3 47999999999988764443211111 233443 34 46653
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
. . . .++.++..+.++.....++... +.-.+...+|.|++.. ...+..||.++++++.+
T Consensus 209 t-~-~------Gl~~~~~~~~~~~~~~~l~~~~--------i~~i~~d~~g~lWigT----~~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 209 T-E-G------YLFQYFPSTGQIKQTEAFHNNS--------IKSLALDGNGDLLAGT----DNGLYVYHNDTTPLQHI 266 (758)
T ss_dssp E-E-E------EEEEEETTTTEEEEEEEEEEEE--------EEEEEECTTCCEEEEE----TTEEEEECCTTSCCEEE
T ss_pred E-C-C------CCeEEcCCCCeEEeccCCCCCe--------EEEEEEcCCCCEEEEe----CCceeEEecCCCcEEEE
Confidence 3 2 1 4777887767776554332110 1122334567787643 14688999988877665
No 238
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=41.10 E-value=93 Score=29.26 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=20.1
Q ss_pred cCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227 411 NKGLLMLSLRSRQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 411 ~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~ 441 (468)
.+|.||+.. ..++++..|+.+++..+..
T Consensus 110 ~~g~Vy~Gs---~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 110 EDEKVYTGS---MRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp CCEEEEECE---EEEEEEEEETTTCCEEEEE
T ss_pred cCCEEEEEe---cCCEEEEEECCCCcEEEEE
Confidence 467887632 2468999999999766653
No 239
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=41.06 E-value=1.9e+02 Score=25.65 Aligned_cols=142 Identities=12% Similarity=0.048 Sum_probs=65.0
Q ss_pred eEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCC
Q 012227 216 LVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPS 295 (468)
Q Consensus 216 Ll~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~ 295 (468)
.+++.......+.+||..+++....-.. ..... ..+.+.+ +.-.++..+.++.+.+||..+..-. ..+..
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~--h~~~v--~~~~~s~----~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~ 255 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIG--HTGYL--NTVTVSP----DGSLCASGGKDGQAMLWDLNEGKHL--YTLDG 255 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECC--CSSCE--EEEEECT----TSSEEEEEETTCEEEEEETTTTEEE--EEEEC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecC--CCCcE--EEEEECC----CCCEEEEEeCCCeEEEEEeccCcee--eeecC
Confidence 3444444445788999988776533221 11112 2233332 1123333344567999998764321 11100
Q ss_pred CcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCC-------CCCCCceEEEE--CCeEEEEEE
Q 012227 296 NIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTP-------LHLNDHTLAEC--GGRIMLVGL 364 (468)
Q Consensus 296 ~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p-------~~~~~~~l~~~--~G~L~lv~~ 364 (468)
. .....+.. ++.+.. +.....|..||+.+...... +... .+.....-+.. +|++++.+.
T Consensus 256 ~--------~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 256 G--------DIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDE-LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp S--------SCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEE-ECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred C--------ceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEe-ccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 0 00111111 333332 33345788899887754332 1111 01111111222 677655543
Q ss_pred EeeCCccEEEEEEEecC
Q 012227 365 LTKNAATCVCIWELQKM 381 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ld~~ 381 (468)
. ...+.||.+...
T Consensus 326 -~---Dg~v~iW~~~tG 338 (340)
T 4aow_A 326 -T---DNLVRVWQVTIG 338 (340)
T ss_dssp -T---TSCEEEEEEEC-
T ss_pred -C---CCEEEEEeCCCc
Confidence 2 247899988753
No 240
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=40.37 E-value=2.1e+02 Score=25.75 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=68.1
Q ss_pred cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCC--CCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNS--TSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~--~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
.+|-+++.......+.+||...+....+.... ... ..+.+.+.. ..+...++..+.++.+.+||..+..-..
T Consensus 117 ~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~---~~v--~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~- 190 (319)
T 3frx_A 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHN---DWV--SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA- 190 (319)
T ss_dssp TTSCEEEEEETTSCEEEEETTSCEEEEECCCS---SCE--EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeccC---CcE--EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-
Confidence 34544555545567888887654444433211 111 122222111 1123345555556679999987643211
Q ss_pred CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227 291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~ 367 (468)
.+... ...-..+.+ +|.+.+.++....|..+|+.+.+-... +.... .-..++-. +|.+.+++.
T Consensus 191 -~~~~h-------~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~--~v~~~~~sp~~~~la~~~--- 256 (319)
T 3frx_A 191 -DFIGH-------NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-LSAQD--EVFSLAFSPNRYWLAAAT--- 256 (319)
T ss_dssp -EECCC-------CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EECCS--CEEEEEECSSSSEEEEEE---
T ss_pred -eecCC-------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCC--cEEEEEEcCCCCEEEEEc---
Confidence 00000 000112222 566666666667899999988764332 22111 11122222 555544332
Q ss_pred CCccEEEEEEEec
Q 012227 368 NAATCVCIWELQK 380 (468)
Q Consensus 368 ~~~~~i~Vw~ld~ 380 (468)
...+.||.++.
T Consensus 257 --~~~i~v~~~~~ 267 (319)
T 3frx_A 257 --ATGIKVFSLDP 267 (319)
T ss_dssp --TTEEEEEEETT
T ss_pred --CCCcEEEEeCc
Confidence 24578887764
No 241
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=39.51 E-value=2.5e+02 Score=26.49 Aligned_cols=135 Identities=20% Similarity=0.282 Sum_probs=67.1
Q ss_pred CcEEEE--eCCCCCccCCCCC--C--CCcccCcccccccceEEE-----CCEEEEEEc-CCCeEEEEECC---CCeE---
Q 012227 275 GEYEIY--DSLRNSWTRPGSM--P--SNIKLPVSLNFRSQAVSV-----DGILYFMRS-DPEGIVSYNMV---TGVW--- 336 (468)
Q Consensus 275 ~~v~vy--~s~t~~W~~~~~~--p--~~~~~~~~~~~~~~~v~~-----~G~lY~~~~-~~~~i~~fD~~---~~~w--- 336 (468)
+.+.+| |+.++.++.+... | ..... ..++++ .|++|++.. ....+..|++. +.+.
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~-------pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINE-------VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSS-------CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCC-------eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 348999 6678888887543 3 22111 123323 466666543 33567777762 2222
Q ss_pred --EEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecC--C-CCeEEEEeeChhhhh-cccCcceEEEE
Q 012227 337 --KQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKM--T-LLWKEVDRMPNIWCL-DFYGKHVRMTC 408 (468)
Q Consensus 337 --~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~--~-~~W~~v~~mp~~~~~-~~~~~~~~~~~ 408 (468)
+.+.++ .. --.+++- .|.||+-. ++ ..||+++.. . .+-+.+..++...+. +.. .+..
T Consensus 172 lVR~f~lg--sq--~EgcvvDd~~g~Lyv~e----Ed---~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvE----GLai 236 (355)
T 3amr_A 172 KVRAFKMN--SQ--TEGMAADDEYGRLYIAE----ED---EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIE----GLTI 236 (355)
T ss_dssp EEEEEECS--SC--EEEEEEETTTTEEEEEE----TT---TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEE----EEEE
T ss_pred EEEEecCC--CC--cceEEEcCCCCeEEEec----cc---ceEEEEeCCcCCCCCceEEEEecCCccccCcc----eEEE
Confidence 222232 11 1122332 47888643 11 369999943 2 245667666433222 111 1222
Q ss_pred E-ec--CCEEEEEeeeCCCCeEEEEECC
Q 012227 409 L-GN--KGLLMLSLRSRQMNRLVTYNVM 433 (468)
Q Consensus 409 ~-~~--~~~I~~~~~~~~~~~l~~YD~~ 433 (468)
. .. .+.|+++.. ..+.+.+||.+
T Consensus 237 ~~~~~g~gyLivSsQ--G~~s~~Vydr~ 262 (355)
T 3amr_A 237 YYAADGKGYLMASSQ--GNSSYAIYDRQ 262 (355)
T ss_dssp EECGGGCEEEEEEEG--GGTEEEEEESS
T ss_pred EecCCCCEEEEEEcC--CCCEEEEEECC
Confidence 2 21 235655432 24678899986
No 242
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=38.53 E-value=2.1e+02 Score=25.25 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=14.6
Q ss_pred CEEEEEEcCCCeEEEEECCCCe
Q 012227 314 GILYFMRSDPEGIVSYNMVTGV 335 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~~~~ 335 (468)
|.+.+.+.....|..||+.+.+
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTT
T ss_pred CcEEEEecCCCcEEEecCCChH
Confidence 5555555555688899987643
No 243
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=37.77 E-value=3.4e+02 Score=27.53 Aligned_cols=188 Identities=8% Similarity=0.009 Sum_probs=84.8
Q ss_pred ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-----cEEEEeCCCC-CccCCCCCCCCcc
Q 012227 225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-----EYEIYDSLRN-SWTRPGSMPSNIK 298 (468)
Q Consensus 225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-----~v~vy~s~t~-~W~~~~~~p~~~~ 298 (468)
..++++|..+++...+....... .....+...+ +.-.|+....+. .+.++|..++ ..+.+..-....
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~--~~~~~~~~sp----dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~- 307 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKE--KFLTNLSWSP----DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH- 307 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTT--CEEEEEEECT----TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS-
T ss_pred eEEEEEECCCCceEeeccCCCCc--eeEeeEEEEC----CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC-
Confidence 46999999999877665321111 1112223321 112344333332 4778888776 554331100000
Q ss_pred cCcccccccceEE-E--CCEEEEEEcCC--CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCe-EEEEEEEeeCCc
Q 012227 299 LPVSLNFRSQAVS-V--DGILYFMRSDP--EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGR-IMLVGLLTKNAA 370 (468)
Q Consensus 299 ~~~~~~~~~~~v~-~--~G~lY~~~~~~--~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~-L~lv~~~~~~~~ 370 (468)
. ........+ - +|.+.+.+... ..|..+|...+....+. .. ......+... +|+ |++.+. .+..
T Consensus 308 --~-~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~-~~~v~~~~~~spdg~~l~~~~~--~~~~ 379 (706)
T 2z3z_A 308 --Y-VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KG-EWEVTNFAGFDPKGTRLYFEST--EASP 379 (706)
T ss_dssp --C-CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CS-SSCEEEEEEECTTSSEEEEEES--SSCT
T ss_pred --e-ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CC-CeEEEeeeEEcCCCCEEEEEec--CCCC
Confidence 0 000011121 2 77766665432 35777777666666541 11 1111111222 454 444332 1222
Q ss_pred cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeee-CCCCeEEEEECCCCcE
Q 012227 371 TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRS-RQMNRLVTYNVMSREW 437 (468)
Q Consensus 371 ~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~-~~~~~l~~YD~~t~~w 437 (468)
....||.++..+...+.+. ... + ..-..+. ++..|++.... .....++.+|+++++.
T Consensus 380 ~~~~l~~~d~~~~~~~~l~---~~~-----~--~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~ 438 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLT---PES-----G--MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH 438 (706)
T ss_dssp TCBEEEEEETTCCCCEESC---CSS-----S--EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEE
T ss_pred ceEEEEEEEcCCCCceecc---CCC-----c--eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeE
Confidence 2467888886555543332 100 0 1112233 34445443222 2335689999988873
No 244
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=37.39 E-value=2.9e+02 Score=26.67 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=57.3
Q ss_pred CEEEEEEcCC----CeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CC-eEEEEEEEeeC---CccEEEEEEEecCCCC
Q 012227 314 GILYFMRSDP----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GG-RIMLVGLLTKN---AATCVCIWELQKMTLL 384 (468)
Q Consensus 314 G~lY~~~~~~----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G-~L~lv~~~~~~---~~~~i~Vw~ld~~~~~ 384 (468)
..+|+..... +.|.++|+.+.+-... +|.... +.++.. +| .||+....... ....-.|..+|..+.+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-I~vG~~---Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGM-TDGGFL---PHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEECSS---CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEE-EECCCC---CceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 4677776533 5899999999876542 443322 244443 45 46655432110 0011256666775543
Q ss_pred eEEEEeeC-hhhhhcccCcc-eEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227 385 WKEVDRMP-NIWCLDFYGKH-VRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL 438 (468)
Q Consensus 385 W~~v~~mp-~~~~~~~~~~~-~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~ 438 (468)
=...-.++ ...+. .+.. ..+....++..+|+.... ..+.+.++|+.+++..
T Consensus 161 vv~~I~v~g~~r~~--~g~~P~~~~~spDGk~lyV~n~~-~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 161 PIADIELPDAPRFL--VGTYQWMNALTPDNKNLLFYQFS-PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEEEETTCCCCC--BSCCGGGSEECTTSSEEEEEECS-SSCEEEEEETTTTEEE
T ss_pred EEEEEECCCccccc--cCCCcceEEEcCCCCEEEEEecC-CCCeEEEEECCCCeEE
Confidence 32222232 11100 0000 012222356677775321 2467889999888654
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=37.21 E-value=3.6e+02 Score=27.65 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=57.5
Q ss_pred EEEEEEecCcEEEEeCCCC--CccCCCCCCCCcccCc-ccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeec
Q 012227 267 KILWVGCDGEYEIYDSLRN--SWTRPGSMPSNIKLPV-SLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFII 341 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~--~W~~~~~~p~~~~~~~-~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~ 341 (468)
+||+...++.+..+|..++ .|+.-...+....... ........++.+|++|+.+. ...|.++|..|+ .|+.- .
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~l~alD~~tG~~~W~~~-~ 145 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-DGRLIALDAKTGKAIWSQQ-T 145 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-TSEEEEEETTTCCEEEEEE-C
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-CCEEEEEECCCCCEeeeec-c
Confidence 5555544555777776554 3775332211100000 00001234557899988653 468999998775 57753 3
Q ss_pred CCCC--CCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecC--CCCeEEE
Q 012227 342 PTPL--HLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM--TLLWKEV 388 (468)
Q Consensus 342 P~p~--~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v 388 (468)
..+. .......+..+|.+++..... +....-.|+.+|.. +..|+.-
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEec
Confidence 2111 111122345688876532110 00011146666654 3457653
No 246
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=37.14 E-value=2.4e+02 Score=25.69 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=47.5
Q ss_pred EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCC
Q 012227 267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH 346 (468)
Q Consensus 267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~ 346 (468)
.++..+.++.+.+||..++.-.................+ ......++.+.+.+ ....|..||+.+.+.... +.. +
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~-~~~--~ 333 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVP-YGSTIAVYTVYSGEQITM-LKG--H 333 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEE-ETTEEEEEETTTCCEEEE-ECC--C
T ss_pred EEEEecCCCeEEEEECCCCccceecccccccccccccee-EEecCCCceEEEEe-cCCEEEEEECcCCcceee-ecc--C
Confidence 344444566799999887653221110000000000000 00000123333333 345788899887664432 221 1
Q ss_pred CCC-ceEEEE-CCeEEEEEEEeeCCccEEEEEEEecC
Q 012227 347 LND-HTLAEC-GGRIMLVGLLTKNAATCVCIWELQKM 381 (468)
Q Consensus 347 ~~~-~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~ 381 (468)
... ..+... +|++++.+.. ...+.||.++..
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~----dg~i~iw~~~~~ 366 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSR----DCNILAWVPSLY 366 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEET----TSCEEEEEECC-
T ss_pred CCeEEEEEEcCCCCEEEEECC----CCeEEEEeCCCC
Confidence 111 223333 5666555432 247899988754
No 247
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=37.10 E-value=2.3e+02 Score=26.74 Aligned_cols=104 Identities=8% Similarity=0.018 Sum_probs=50.0
Q ss_pred CceEEEEEcCCceEEEEcCCCCc----eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQS----FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~----~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~ 289 (468)
++.+++.....+.+.+||..++. ...+.. ..... ..+.+.+ .+.+.++..+.++.+.+||..+..= .
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v--~~i~~~p---~~~~~l~tg~~dg~v~vwd~~~~~~-~ 313 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA---HTAEV--NCLSFNP---YSEFILATGSADKTVALWDLRNLKL-K 313 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC---CSSCE--EEEEECS---SCTTEEEEEETTSEEEEEETTCTTS-C
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEeec---CCCCe--EEEEeCC---CCCCEEEEEeCCCeEEEEeCCCCCC-C
Confidence 45555555555688999988753 111111 11111 2333331 2334444444456799999876320 1
Q ss_pred CCCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCC
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~ 333 (468)
+..+... ...-..+.+ +| .+++.++..+.|..||+.+
T Consensus 314 ~~~~~~h-------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 314 LHSFESH-------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SEEEECC-------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred eEEeecC-------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 1110000 001112222 34 4566665556788899876
No 248
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=37.03 E-value=2.1e+02 Score=24.93 Aligned_cols=97 Identities=7% Similarity=-0.138 Sum_probs=45.6
Q ss_pred EEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccCCCCCCCCc
Q 012227 219 FLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTRPGSMPSNI 297 (468)
Q Consensus 219 ~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~~~~~p~~~ 297 (468)
+.....+.+.+||..+++....-.. ..... ..+.+.+ +.-.++..+.++.+.+|+..+.. ...+..+...
T Consensus 33 ~s~~~dg~v~vw~~~~~~~~~~~~~--~~~~v--~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~- 103 (313)
T 3odt_A 33 ASVSRDGTVRLWSKDDQWLGTVVYT--GQGFL--NSVCYDS----EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH- 103 (313)
T ss_dssp EEEETTSEEEEEEESSSEEEEEEEE--CSSCE--EEEEEET----TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC-
T ss_pred EEEEcCCcEEEEECCCCEEEEEeec--CCccE--EEEEECC----CCCEEEEecCCCeEEEEEeeecCCCCcccchhhc-
Confidence 3333445788999877664433221 11122 2233331 12244444445668888875432 2212111111
Q ss_pred ccCcccccccceEEECCEEEEEEcCCCeEEEEE
Q 012227 298 KLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYN 330 (468)
Q Consensus 298 ~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD 330 (468)
...-..+..++...+.+.....|..+|
T Consensus 104 ------~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 104 ------QGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp ------SSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ------ccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 001123334565555565667888899
No 249
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=36.55 E-value=85 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=27.4
Q ss_pred eEEEEcCCCC-ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE
Q 012227 226 NFYVCNPLTQ-SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG 272 (468)
Q Consensus 226 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~ 272 (468)
.++++||.|+ .|...... ...+.+..| ...+.|+|+.+.
T Consensus 12 ~V~~~D~~tk~~W~p~g~~------~~~V~~~~d--~~~~~yRIv~~~ 51 (120)
T 1ddw_A 12 HVFQIDPNTKKNWVPTSKH------AVTVSYFYD--STRNVYRIISLD 51 (120)
T ss_dssp EEEEECTTTSCSEEESCSS------CEEEEEEEE--TTTTEEEEEEEE
T ss_pred EEEEEcCCCCCceEeCCCC------ceEEEEEEc--CCCCEEEEEEcc
Confidence 5889999996 99765442 134556677 666779998754
No 250
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=36.36 E-value=3.6e+02 Score=27.47 Aligned_cols=56 Identities=7% Similarity=-0.016 Sum_probs=31.6
Q ss_pred ceEEEEcCCCC---ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 225 RNFYVCNPLTQ---SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 225 ~~~~V~NP~T~---~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
..+++||..++ +.+.+..... .. ..+.+.+ +.+.++...+..+.++|..++....+
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~---~~--~~~~~SP-----DG~~la~~~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEG---FA--TDAKLSP-----KGGFVSFIRGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSS---CE--EEEEECT-----TSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred CcEEEEECCCCCcceEEEcccCCc---cc--ccccCCC-----CCCEEEEEeCCcEEEEecCCCCEEEe
Confidence 57999999888 6655544211 11 2222321 12333334456789999887766544
No 251
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=35.23 E-value=2.4e+02 Score=25.05 Aligned_cols=104 Identities=12% Similarity=-0.060 Sum_probs=49.4
Q ss_pred CceEEEEEcCCceEEEEcCCCCc----eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeC-CCCCcc
Q 012227 214 GGLVCFLDIGHRNFYVCNPLTQS----FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDS-LRNSWT 288 (468)
Q Consensus 214 ~GLl~~~~~~~~~~~V~NP~T~~----~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s-~t~~W~ 288 (468)
+|-+++.......+.+||..+++ ...+.. .......+.+..+ +.+.++..+.++.+.+|+. .++.-.
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~~~ 93 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR---YKHPLLCCNFIDN-----TDLQIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE---CSSCEEEEEEEES-----SSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeeee---cCCceEEEEECCC-----CCcEEEEEcCCCeEEEEEeccCCceE
Confidence 44333444444578888887766 332221 1112222333222 2224555455667999998 776543
Q ss_pred CCCCCCCCcccCcccccccceEE-ECCEEEEEEcCCCeEEEEECCC
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVS-VDGILYFMRSDPEGIVSYNMVT 333 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~-~~G~lY~~~~~~~~i~~fD~~~ 333 (468)
.+...... . .-..+. ..+.+.+.+.....|..+|+.+
T Consensus 94 ~~~~~~~~--~------~v~~l~~~~~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 94 ALTNNEAN--L------GICRICKYGDDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp ECBSCCCC--S------CEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred eccccCCC--C------ceEEEEeCCCCEEEEEcCCCeEEEEcccc
Confidence 33210000 0 011122 2134444444556788888764
No 252
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=34.01 E-value=2.7e+02 Score=25.32 Aligned_cols=171 Identities=14% Similarity=0.213 Sum_probs=78.6
Q ss_pred CcccCCCCC-CCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEE
Q 012227 191 KKWHHPTIS-SLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKIL 269 (468)
Q Consensus 191 ~~w~~~~l~-~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv 269 (468)
+.|.....+ .+|.....+ ....+|.+++.... ..++.-.=--+.|..+...... ...++.++ + +.+++
T Consensus 109 ~tW~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~-g~v~~S~DgG~tW~~~~~~~~~----~~~~~~~~--~---~~~~~ 177 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLI-KALGNGSAEMITNV-GAIYRTKDSGKNWQALVQEAIG----VMRNLNRS--P---SGEYV 177 (327)
T ss_dssp SSCEECCCCTTCSSCEEEE-EEEETTEEEEEETT-CCEEEESSTTSSEEEEECSCCC----CEEEEEEC--T---TSCEE
T ss_pred CCceECccccCCCCCeEEE-EEECCCCEEEEeCC-ccEEEEcCCCCCCEEeecCCCc----ceEEEEEc--C---CCcEE
Confidence 467655433 233332233 33344554444432 2354443334568777543211 12333333 2 12455
Q ss_pred EEEecCcEEEE-eCCCCCccCCCCCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECC-CCeEEEeecC-CC
Q 012227 270 WVGCDGEYEIY-DSLRNSWTRPGSMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMV-TGVWKQFIIP-TP 344 (468)
Q Consensus 270 ~v~~~~~v~vy-~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~-~~~w~~i~~P-~p 344 (468)
+++..+.+..- |.+..+|+.+.... .. ....+. -+|.+|..+.. ..+...+.. ..+|..+..| .+
T Consensus 178 ~~g~~G~~~~S~d~gG~tW~~~~~~~-~~--------~~~~~~~~~~g~~~~~~~~-G~~~~s~~D~G~tW~~~~~~~~~ 247 (327)
T 2xbg_A 178 AVSSRGSFYSTWEPGQTAWEPHNRTT-SR--------RLHNMGFTPDGRLWMIVNG-GKIAFSDPDNSENWGELLSPLRR 247 (327)
T ss_dssp EEETTSSEEEEECTTCSSCEEEECCS-SS--------CEEEEEECTTSCEEEEETT-TEEEEEETTEEEEECCCBCTTSS
T ss_pred EEECCCcEEEEeCCCCCceeECCCCC-CC--------ccceeEECCCCCEEEEeCC-ceEEEecCCCCCeeEeccCCccc
Confidence 55544433332 22357898764211 10 111222 25777766643 344444333 5689876555 22
Q ss_pred CCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEE
Q 012227 345 LHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVD 389 (468)
Q Consensus 345 ~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~ 389 (468)
.......++.. ++.+++++.. . .|++-.+....|+.+.
T Consensus 248 ~~~~~~~v~~~~~~~~~~~g~~-----g--~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 248 NSVGFLDLAYRTPNEVWLAGGA-----G--ALLCSQDGGQTWQQDV 286 (327)
T ss_dssp CCSCEEEEEESSSSCEEEEEST-----T--CEEEESSTTSSCEECG
T ss_pred CCcceEEEEecCCCEEEEEeCC-----C--eEEEeCCCCcccEEcC
Confidence 22111222222 6788877531 1 3455555568998864
No 253
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=33.45 E-value=2.8e+02 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=17.1
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
+|...+.+.....|..+|+.+.....
T Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 160 DGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp TSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCeEEEEECCCCcEEE
Confidence 45544445455678899998876544
No 254
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.32 E-value=2.8e+02 Score=25.25 Aligned_cols=204 Identities=9% Similarity=-0.040 Sum_probs=0.0
Q ss_pred ecCceEEEEE---cCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCcc
Q 012227 212 SAGGLVCFLD---IGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWT 288 (468)
Q Consensus 212 s~~GLl~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~ 288 (468)
|-+|-.++.. .....++++|..+++.+.+.............. .+.-+|+.+..+..+.+++..++.-+
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s--------pdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS--------TDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC--------TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC--------CCCCEEEEEEcCCcEEEEECCCCCcE
Q ss_pred CCCCCCCCcccCcccccccceEEECCEEEEEE------------------------------cCCCeEEEEECCCCeEEE
Q 012227 289 RPGSMPSNIKLPVSLNFRSQAVSVDGILYFMR------------------------------SDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~------------------------------~~~~~i~~fD~~~~~w~~ 338 (468)
.+...+. ...-+|...+.. .....|..+|+.+++...
T Consensus 116 ~~~~~~~-------------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 116 VIYTVDE-------------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp EEEECCT-------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred EEEeccc-------------ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Q ss_pred eecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEE
Q 012227 339 FIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLML 417 (468)
Q Consensus 339 i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~ 417 (468)
+ .............. -+++|+++.. .........||.++.....+..+.. ......... +....++..|++
T Consensus 183 ~-~~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~-----~~~spdg~~l~~ 254 (396)
T 3c5m_A 183 I-HQDTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH-----EFWIPDGSAMAY 254 (396)
T ss_dssp E-EEESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE-----EEECTTSSCEEE
T ss_pred e-ccCCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccc-----eEECCCCCEEEE
Q ss_pred EeeeCCCCe--EEEEECCCCcEEEccCCc
Q 012227 418 SLRSRQMNR--LVTYNVMSREWLKVPGCV 444 (468)
Q Consensus 418 ~~~~~~~~~--l~~YD~~t~~w~~v~~~~ 444 (468)
......... ++.||+.+++.+.+...+
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 283 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLENEEVMVMP 283 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCEEEEEECC
T ss_pred EecCCCCccceEEEEECCCCCeEEeeeCC
No 255
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=32.63 E-value=2.3e+02 Score=25.83 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=33.5
Q ss_pred eEEE--CCEEEEEEcC-----CCeEEEEECCCCe-EEEeecCCCCC---CCCceEEEE--CCeEEEEE
Q 012227 309 AVSV--DGILYFMRSD-----PEGIVSYNMVTGV-WKQFIIPTPLH---LNDHTLAEC--GGRIMLVG 363 (468)
Q Consensus 309 ~v~~--~G~lY~~~~~-----~~~i~~fD~~~~~-w~~i~~P~p~~---~~~~~l~~~--~G~L~lv~ 363 (468)
++.+ +|.||++... ...|+.||+.+++ ...+.+|.... .....++.. +|.+|+..
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEc
Confidence 4445 4899998753 4689999999887 44454442211 111345554 47777754
No 256
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=32.46 E-value=2.3e+02 Score=26.58 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEEEecCcEEEEeCCC--CCccCCCCCCCCcccCcccccccceEEEC---CEEEEEEcCCC----eEEEEECCCCeEEE
Q 012227 268 ILWVGCDGEYEIYDSLR--NSWTRPGSMPSNIKLPVSLNFRSQAVSVD---GILYFMRSDPE----GIVSYNMVTGVWKQ 338 (468)
Q Consensus 268 Vv~v~~~~~v~vy~s~t--~~W~~~~~~p~~~~~~~~~~~~~~~v~~~---G~lY~~~~~~~----~i~~fD~~~~~w~~ 338 (468)
.+.++....+.+|+... .+|+......... .-..++++ ....|++.... .|...+-...+|..
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~--------~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGH--------TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTE 95 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTS--------EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEE
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCC--------ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceE
Q ss_pred eecC--CCCCC---------CCceEEEE----CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhh------
Q 012227 339 FIIP--TPLHL---------NDHTLAEC----GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL------ 397 (468)
Q Consensus 339 i~~P--~p~~~---------~~~~l~~~----~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~------ 397 (468)
+..+ .+... ....++.. .+.||+..... .||+.++....|+.+..+...-..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~g-------gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQ-------GLFRSTDHGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETT-------EEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCC-------cEEEEcCCCCCeEECcCccCCccccccccc
Q ss_pred ----cccCcceEEEEEe--cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227 398 ----DFYGKHVRMTCLG--NKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 398 ----~~~~~~~~~~~~~--~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v 440 (468)
...........+. ..+.||+..... .++..+-..++|+.+
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~g---gl~~s~DgG~tW~~~ 214 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSSG---GVFESTDAGTDWKPL 214 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEETB---EEEEESSTTSSCEEC
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECCC---CEEEECCCCCCceEC
No 257
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=32.33 E-value=3e+02 Score=25.31 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=37.6
Q ss_pred CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecC----CCCeE
Q 012227 313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKM----TLLWK 386 (468)
Q Consensus 313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~----~~~W~ 386 (468)
+|.+.+.+.....|..+|+.+.+.... . ...+.....-+.. +|++.+.+. . ..+++||.+... +..|+
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~~-~-~~gH~~~V~~v~fSpdg~~laS~S-~---D~tvrvw~ip~~~~~~~s~~~ 353 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSKI-F-KQAHSFAITEVTISPDSTYVASVS-A---ANTIHIIKLPLNYANYTSMKQ 353 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEE-E-TTSSSSCEEEEEECTTSCEEEEEE-T---TSEEEEEECCTTTTC------
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEEE-e-cCcccCCEEEEEECCCCCEEEEEe-C---CCeEEEEEcCCCCcCccCccc
Confidence 677777777667899999998764332 1 1122222222333 677655443 2 268999987542 23455
Q ss_pred EEEee
Q 012227 387 EVDRM 391 (468)
Q Consensus 387 ~v~~m 391 (468)
++..+
T Consensus 354 ~l~kl 358 (365)
T 4h5i_A 354 KISKL 358 (365)
T ss_dssp -----
T ss_pred cceee
Confidence 54443
No 258
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=32.20 E-value=4e+02 Score=26.64 Aligned_cols=147 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEecCCCC-----cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARS-----VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS 286 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~-----~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~ 286 (468)
+.+|-+++.......+.+||..+++....-... .+......+.+..| .-.++..+.++.+.+||..++.
T Consensus 199 spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd------g~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC------CCEEEEEeCCCeEEEEeCCCCc
Q ss_pred ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEE
Q 012227 287 WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGL 364 (468)
Q Consensus 287 W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~ 364 (468)
....-........ ....+..++...+.+.....+..+|+.+...... ...+.....-+.. +|+..+.+.
T Consensus 273 ~~~~~~~~~~~~~------~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~---~~gh~~~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 273 VEKTIPVGTRIED------QQLGIIWTKQALVSISANGFINFVNPELGSIDQV---RYGHNKAITALSSSADGKTLFSAD 343 (611)
T ss_dssp EEEEEECCSSGGG------CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eeeeecCCCCccc------eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE---EcCCCCCEEEEEEeCCCCEEEEEe
Q ss_pred EeeCCccEEEEEE
Q 012227 365 LTKNAATCVCIWE 377 (468)
Q Consensus 365 ~~~~~~~~i~Vw~ 377 (468)
... .+.+|.
T Consensus 344 ~D~----~v~~Wd 352 (611)
T 1nr0_A 344 AEG----HINSWD 352 (611)
T ss_dssp TTS----CEEEEE
T ss_pred CCC----cEEEEE
No 259
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=31.96 E-value=4.2e+02 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=19.9
Q ss_pred ecCCEEEEEeee--CCCCeEEEEECCCCcEEEc
Q 012227 410 GNKGLLMLSLRS--RQMNRLVTYNVMSREWLKV 440 (468)
Q Consensus 410 ~~~~~I~~~~~~--~~~~~l~~YD~~t~~w~~v 440 (468)
.++..|++.... .....++.+|+++++.+.+
T Consensus 295 pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~ 327 (741)
T 2ecf_A 295 RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL 327 (741)
T ss_dssp EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEEecccCCeEEEEEEECCCCceEEE
Confidence 556666653321 1345789999999887665
No 260
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=28.42 E-value=3e+02 Score=24.01 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=38.3
Q ss_pred EEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227 268 ILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQ 338 (468)
Q Consensus 268 Vv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~ 338 (468)
+++++.++.+.+||..+++-...-...... ..-.++.+ +|...+.++....|..+|+.+++...
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~-------~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPG-------EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTT-------CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCC-------CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 566777888999999887643321111100 00112222 56666666666789999999887543
No 261
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=25.79 E-value=2.3e+02 Score=27.46 Aligned_cols=55 Identities=18% Similarity=0.440 Sum_probs=44.2
Q ss_pred EECCEEEEEEcC------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEE
Q 012227 311 SVDGILYFMRSD------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLL 365 (468)
Q Consensus 311 ~~~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~ 365 (468)
+.+|+||..+.. ...+..-+...+.|+.+..|...+......+..++.|++.+..
T Consensus 346 yYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 346 YYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp EETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred hhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence 579999999752 1346666777889999999977777778889999999998864
No 262
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=25.54 E-value=1.3e+02 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=27.3
Q ss_pred eEEEEcCCCC-ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE
Q 012227 226 NFYVCNPLTQ-SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG 272 (468)
Q Consensus 226 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~ 272 (468)
.++++||.|+ .|...-... ..+.+..| ...+.|+|+.+.
T Consensus 17 ~Vm~~D~~tk~~WvP~g~~~------~~V~i~~d--~~rnsyRIvg~~ 56 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSKHA------VTVSYFYD--STRNVYRIISLD 56 (168)
T ss_dssp EEEEECTTSSCCSEESCSSC------EEEEEEEE--TTTTEEEEEEEE
T ss_pred EEEEECCCCCCceeecCCCC------eEEEEEEc--CCCCEEEEEEcc
Confidence 5899999997 897654421 23556677 666779998754
No 263
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=25.13 E-value=4e+02 Score=24.42 Aligned_cols=193 Identities=8% Similarity=0.020 Sum_probs=87.7
Q ss_pred ecCc-eEEEEEc-CCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC
Q 012227 212 SAGG-LVCFLDI-GHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR 289 (468)
Q Consensus 212 s~~G-Ll~~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~ 289 (468)
|-+| ++++... ....+.|||+.+++......... ....+.+ .+ +.+.++.+.++.+.+++..++.-..
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~---~V~~v~f--sp-----dg~~l~s~s~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG---EVKDLHF--ST-----DGKVVAYITGSSLEVISTVTGSCIA 211 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS---CCCEEEE--CT-----TSSEEEEECSSCEEEEETTTCCEEE
T ss_pred cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC---ceEEEEE--cc-----CCceEEeccceeEEEEEeccCccee
Confidence 4455 3333332 34579999999988765433211 1223333 31 2345555666678888776655321
Q ss_pred CCCCCCCcccCcccccccceEEECCEEEEEEcCCC----eEEEEECCCCeEEEeec-CCCCCCCCceEEEE--CCeEEEE
Q 012227 290 PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPE----GIVSYNMVTGVWKQFII-PTPLHLNDHTLAEC--GGRIMLV 362 (468)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~----~i~~fD~~~~~w~~i~~-P~p~~~~~~~l~~~--~G~L~lv 362 (468)
....... . . ....-...-+|...+.+.... .+..+|........... ....+......+.. +|++.++
T Consensus 212 ~~~~~~~-~--~--~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 212 RKTDFDK-N--W--SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp EECCCCT-T--E--EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred eeecCCC-C--C--CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 1110000 0 0 001112223676666553211 45567766665543211 11111111222222 7887666
Q ss_pred EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227 363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS 434 (468)
Q Consensus 363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t 434 (468)
+.. ..++.||.++. .+.+..+... ..+ .+.-.++.-++..++.. + ..+.|-++|+..
T Consensus 287 gs~----D~~V~iwd~~~----~~~~~~~~~g----H~~-~V~~v~fSpdg~~laS~-S-~D~tvrvw~ip~ 343 (365)
T 4h5i_A 287 ASN----DNSIALVKLKD----LSMSKIFKQA----HSF-AITEVTISPDSTYVASV-S-AANTIHIIKLPL 343 (365)
T ss_dssp EET----TSCEEEEETTT----TEEEEEETTS----SSS-CEEEEEECTTSCEEEEE-E-TTSEEEEEECCT
T ss_pred EcC----CCEEEEEECCC----CcEEEEecCc----ccC-CEEEEEECCCCCEEEEE-e-CCCeEEEEEcCC
Confidence 542 25789995432 2334333211 111 11112233345554432 2 357888999753
No 264
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.99 E-value=54 Score=18.22 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHH
Q 012227 2 GELAMLRQLIGQLQQ 16 (468)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (468)
+|+|+|+|-|..|..
T Consensus 2 geiaalkqeiaalkk 16 (33)
T 4dzn_A 2 GEIAALKQEIAALKK 16 (33)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 578888888876653
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=24.34 E-value=4.7e+02 Score=27.12 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=57.9
Q ss_pred CCEEEEEEcC----CCeEEEEECCC-CeEEE-eecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEec------
Q 012227 313 DGILYFMRSD----PEGIVSYNMVT-GVWKQ-FIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQK------ 380 (468)
Q Consensus 313 ~G~lY~~~~~----~~~i~~fD~~~-~~w~~-i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~------ 380 (468)
++.||+++.. ...|..+|+.+ +.|.. + ++.........+...++.|++.... + ....||.++.
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l-i~~~~~~~l~~~~~~~~~lv~~~~~--~--g~~~l~~~dl~~~~~~ 404 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL-VDHSEDVFMESIAVRSNYLVVAGRR--A--GLTRIWTMMADSQDGV 404 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE-ECCCSSEEEEEEEECSSEEEEEEEE--T--TEEEEEEEECCTTTSC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE-ECCCCCcEEEEEEEECCEEEEEEEe--C--CEEEEEEEeccccccc
Confidence 6788888753 24788999886 67765 4 3332211112233346666655432 2 2446666663
Q ss_pred -CCCC-eEEEEeeChhhhhcccCcceEEEEE------ecCCEEEEEeee-CCCCeEEEEECCCCcEEEcc
Q 012227 381 -MTLL-WKEVDRMPNIWCLDFYGKHVRMTCL------GNKGLLMLSLRS-RQMNRLVTYNVMSREWLKVP 441 (468)
Q Consensus 381 -~~~~-W~~v~~mp~~~~~~~~~~~~~~~~~------~~~~~I~~~~~~-~~~~~l~~YD~~t~~w~~v~ 441 (468)
.++. -..+ .++.... ..... ..++.+++...+ .....++.||+.+++.+.+.
T Consensus 405 ~~~g~~~~~l-~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 405 FKAGTGLREV-VMEEPIF--------TVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp CCTTTCCEEC-CCCCSSC--------EEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEE
T ss_pred ccCCccceEE-CCCCcee--------EEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 1222 2222 1221110 01110 134455443333 23457899999988877664
No 266
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=23.91 E-value=3.3e+02 Score=24.03 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=26.6
Q ss_pred EEECCEEEEEEcCCCeEEEEECC-CCeEEEeecCCCCCCCCceEEEE-CCeEEEE
Q 012227 310 VSVDGILYFMRSDPEGIVSYNMV-TGVWKQFIIPTPLHLNDHTLAEC-GGRIMLV 362 (468)
Q Consensus 310 v~~~G~lY~~~~~~~~i~~fD~~-~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv 362 (468)
+..+|.+|+-+ ....+..||.. +..|..- .+.+ . ...++.. +|.|++.
T Consensus 104 ~~~~~~l~v~t-~~~~l~~~d~~g~~~~~~~-~~~~--~-~~~~~~~~~g~l~vg 153 (330)
T 3hxj_A 104 TIFEDILYVTS-MDGHLYAINTDGTEKWRFK-TKKA--I-YATPIVSEDGTIYVG 153 (330)
T ss_dssp EEETTEEEEEC-TTSEEEEECTTSCEEEEEE-CSSC--C-CSCCEECTTSCEEEE
T ss_pred eEECCEEEEEe-cCCEEEEEcCCCCEEEEEc-CCCc--e-eeeeEEcCCCEEEEE
Confidence 34588887654 44689999998 3345432 2221 1 1223333 6777653
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=23.85 E-value=2.9e+02 Score=27.84 Aligned_cols=78 Identities=12% Similarity=0.229 Sum_probs=44.5
Q ss_pred EEEEeCCCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCCCceE
Q 012227 277 YEIYDSLRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLNDHTL 352 (468)
Q Consensus 277 v~vy~s~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~~~~l 352 (468)
+..+|..+++ |+.-...+. .....+..+|.+|+ +.....+.+||.++++ |+. .+|.... ..+..
T Consensus 468 l~A~D~~tG~~~W~~~~~~~~---------~~g~~~tagglvf~-g~~dg~l~A~D~~tG~~lW~~-~~~~g~~-a~P~~ 535 (582)
T 1flg_A 468 LRAMDPVSGKVVWEHKEHLPL---------WAGVLATAGNLVFT-GTGDGYFKAFDAKSGKELWKF-QTGSGIV-SPPIT 535 (582)
T ss_dssp EEEECTTTCCEEEEEEESSCC---------CSCCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEE-ECSSCCC-SCCEE
T ss_pred EEEEECCCCCEEEEecCCCCC---------cccceEeCCCEEEE-ECCCCcEEEEECCCCCEEEEe-cCCCCcc-cCceE
Confidence 6677776654 764322111 11223445788887 4455689999998764 654 3443221 11222
Q ss_pred EEECCeEEEEEEEe
Q 012227 353 AECGGRIMLVGLLT 366 (468)
Q Consensus 353 ~~~~G~L~lv~~~~ 366 (468)
.+.+|++|++....
T Consensus 536 y~~~G~qYv~~~~G 549 (582)
T 1flg_A 536 WEQDGEQYLGVTVG 549 (582)
T ss_dssp EEETTEEEEEEEEC
T ss_pred EEECCEEEEEEEcc
Confidence 34799999987543
No 268
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=23.77 E-value=3.4e+02 Score=25.52 Aligned_cols=107 Identities=12% Similarity=0.213 Sum_probs=58.1
Q ss_pred EEEEEcC--CceEEEE--cCCCCceEecCCC--C--cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeC---CCC
Q 012227 217 VCFLDIG--HRNFYVC--NPLTQSFKELPAR--S--VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDS---LRN 285 (468)
Q Consensus 217 l~~~~~~--~~~~~V~--NP~T~~~~~LP~~--~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s---~t~ 285 (468)
++..... ..++.++ ||.++++..+... + ......+.+++.-+ +.++.+.+++...++.++.|.. +.+
T Consensus 89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~--~~~g~~yafV~~k~G~~~q~~l~~~~~g 166 (355)
T 3amr_A 89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHS--QKTGKYYAMVTGKEGEFEQYELKADKNG 166 (355)
T ss_dssp EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEEC--TTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEec--CCCCcEEEEEECCCCeEEEEEEEeCCCC
Confidence 3444444 5677777 9999999988542 2 11122333444335 4455566776666666666655 444
Q ss_pred CccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECC
Q 012227 286 SWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMV 332 (468)
Q Consensus 286 ~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~ 332 (468)
....- +-+.+.++ ....++++ .|.||+-... ..|..||.+
T Consensus 167 ~~~~~--lVR~f~lg----sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~ 209 (355)
T 3amr_A 167 YISGK--KVRAFKMN----SQTEGMAADDEYGRLYIAEED-EAIWKFSAE 209 (355)
T ss_dssp CEEEE--EEEEEECS----SCEEEEEEETTTTEEEEEETT-TEEEEEECS
T ss_pred cccce--EEEEecCC----CCcceEEEcCCCCeEEEeccc-ceEEEEeCC
Confidence 33210 00011111 12335555 4899986644 679999955
No 269
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=23.44 E-value=5.1e+02 Score=25.61 Aligned_cols=107 Identities=6% Similarity=0.059 Sum_probs=58.7
Q ss_pred CEEEEEEcCCCeEEEEECCCCeEEEeecCCCC-CCCCceEEEE---------CCe-EEEEEEEeeCCccEEEEEEEecCC
Q 012227 314 GILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAEC---------GGR-IMLVGLLTKNAATCVCIWELQKMT 382 (468)
Q Consensus 314 G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~---------~G~-L~lv~~~~~~~~~~i~Vw~ld~~~ 382 (468)
+.||+.......|..+|++++....+ ++... ....+.-..+ +|+ ||+.............|+.++...
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~ 230 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC
Confidence 78998876556799999999988876 44322 1222332333 565 776553221001344677775432
Q ss_pred -CCeE------EEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECC
Q 012227 383 -LLWK------EVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVM 433 (468)
Q Consensus 383 -~~W~------~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~ 433 (468)
+.|. .+...... . .+ ++. .++.||++.. ..+.++.||++
T Consensus 231 ~G~~~~~~~~~~v~~~~~p-----~----gi-avdp~~g~LYvtd~--~~g~V~r~d~~ 277 (496)
T 3kya_A 231 DGTFDDRSDIQLIAAYKQC-----N----GA-TIHPINGELYFNSY--EKGQVFRLDLV 277 (496)
T ss_dssp TSCCSTTSCEEEEEEESCC-----C----CE-EECTTTCCEEEEET--TTTEEEEECHH
T ss_pred CCceeecccceeeccCCCc-----e----EE-EEcCCCCeEEEEEC--CCCEEEEEecc
Confidence 3553 33322100 0 12 222 3678887543 35679999998
No 270
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=21.57 E-value=4.3e+02 Score=23.47 Aligned_cols=150 Identities=9% Similarity=0.071 Sum_probs=69.0
Q ss_pred ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227 212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290 (468)
Q Consensus 212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~ 290 (468)
+.+|-.++.......+.+||..+++... +.. +.... ..+.+++ ..-.++..+.++.+.+||.....-..+
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~---h~~~v--~~~~~~~----~~~~l~s~s~D~~i~vwd~~~~~~~~~ 144 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDV--MSVDIDK----KASMIISGSRDKTIKVWTIKGQCLATL 144 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCE--EEEEECT----TSCEEEEEETTSCEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc---CCCcE--EEEEEcC----CCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3455555555555689999998887542 222 11112 2333331 122344444566799999764322111
Q ss_pred CCCCCCcccCccccccc-ceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEEEee
Q 012227 291 GSMPSNIKLPVSLNFRS-QAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGLLTK 367 (468)
Q Consensus 291 ~~~p~~~~~~~~~~~~~-~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~~~~ 367 (468)
.. ....-....+.. ....-++...+.+.....|..+|+.+.+.... .. .+.... .+... +|++.+.+..
T Consensus 145 ~~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~--~h~~~v~~~~~sp~g~~l~s~~~-- 216 (319)
T 3frx_A 145 LG---HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FI--GHNSNINTLTASPDGTLIASAGK-- 216 (319)
T ss_dssp CC---CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-EC--CCCSCEEEEEECTTSSEEEEEET--
T ss_pred ec---cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-ec--CCCCcEEEEEEcCCCCEEEEEeC--
Confidence 10 000000000000 00001233444455556788999988765432 11 111122 22222 5776655432
Q ss_pred CCccEEEEEEEec
Q 012227 368 NAATCVCIWELQK 380 (468)
Q Consensus 368 ~~~~~i~Vw~ld~ 380 (468)
...+.||.+..
T Consensus 217 --dg~i~iwd~~~ 227 (319)
T 3frx_A 217 --DGEIMLWNLAA 227 (319)
T ss_dssp --TCEEEEEETTT
T ss_pred --CCeEEEEECCC
Confidence 25789996543
No 271
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=21.22 E-value=2e+02 Score=22.06 Aligned_cols=41 Identities=5% Similarity=0.039 Sum_probs=27.9
Q ss_pred eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE
Q 012227 226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG 272 (468)
Q Consensus 226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~ 272 (468)
.++++||.|+.|...... .....+.+..| ...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~~----~g~s~V~~~~d--~~~~~yrIv~~~ 52 (112)
T 1evh_A 12 AVMVYDDANKKWVPAGGS----TGFSRVHIYHH--TGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEETTTTEEEEGGGC----CSCEEEEEEEE--TTTTEEEEEEEE
T ss_pred EEEEEcCCCCceEECCCC----CCceEEEEEEE--CCCCEEEEEEEE
Confidence 588899999988754421 11233667777 667789998665
Done!