Query 012230
Match_columns 468
No_of_seqs 190 out of 747
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 00:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 3E-103 6E-108 845.3 39.9 448 14-461 2-449 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 1.1E-91 2.5E-96 737.0 33.3 398 38-466 21-431 (493)
3 cd06424 UGGPase UGGPase cataly 100.0 6.7E-90 1.5E-94 690.3 28.0 315 141-458 1-315 (315)
4 PTZ00339 UDP-N-acetylglucosami 100.0 3.3E-86 7.2E-91 697.3 31.4 401 43-466 2-422 (482)
5 KOG2388 UDP-N-acetylglucosamin 100.0 1.1E-78 2.5E-83 623.6 20.7 397 39-466 3-413 (477)
6 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 6.1E-77 1.3E-81 603.3 27.3 313 128-458 1-323 (323)
7 cd00897 UGPase_euk Eukaryotic 100.0 6E-74 1.3E-78 573.3 25.5 287 138-459 1-289 (300)
8 PF01704 UDPGP: UTP--glucose-1 100.0 1.6E-72 3.5E-77 586.9 21.4 339 86-459 2-347 (420)
9 PLN02474 UTP--glucose-1-phosph 100.0 4.3E-71 9.3E-76 578.3 28.8 334 86-459 26-364 (469)
10 COG4284 UDP-glucose pyrophosph 100.0 4.9E-65 1.1E-69 524.3 25.5 384 37-461 13-410 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 2.6E-63 5.7E-68 491.9 27.2 265 141-456 1-266 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 6.3E-59 1.4E-63 466.8 22.3 338 84-459 52-390 (498)
13 PRK05293 glgC glucose-1-phosph 98.8 1.5E-07 3.3E-12 97.7 17.2 194 140-395 3-205 (380)
14 PRK00844 glgC glucose-1-phosph 98.8 3E-07 6.6E-12 96.7 17.5 203 138-395 3-212 (407)
15 PRK15480 glucose-1-phosphate t 98.7 3.3E-07 7.1E-12 92.6 16.2 175 140-388 3-182 (292)
16 TIGR02092 glgD glucose-1-phosp 98.7 3.7E-07 8E-12 94.6 15.5 156 140-336 2-165 (369)
17 TIGR01207 rmlA glucose-1-phosp 98.7 4.5E-07 9.8E-12 91.3 15.3 141 143-335 2-147 (286)
18 cd06425 M1P_guanylylT_B_like_N 98.7 8.1E-07 1.8E-11 85.9 16.1 177 142-390 2-183 (233)
19 COG1208 GCD1 Nucleoside-diphos 98.6 4.4E-07 9.5E-12 94.2 14.4 141 141-335 2-147 (358)
20 PF00483 NTP_transferase: Nucl 98.6 2.6E-07 5.6E-12 89.6 11.9 182 143-395 2-192 (248)
21 TIGR01105 galF UTP-glucose-1-p 98.6 9E-07 2E-11 89.6 15.9 64 140-219 3-69 (297)
22 PRK00725 glgC glucose-1-phosph 98.6 1E-06 2.3E-11 93.3 16.9 204 139-395 14-224 (425)
23 cd02538 G1P_TT_short G1P_TT_sh 98.6 1E-06 2.2E-11 85.6 14.7 179 142-395 2-185 (240)
24 PRK14356 glmU bifunctional N-a 98.6 9.9E-07 2.1E-11 93.8 15.4 145 140-342 5-150 (456)
25 cd04197 eIF-2B_epsilon_N The N 98.6 1.2E-06 2.6E-11 84.1 14.5 135 142-324 2-146 (217)
26 PRK02862 glgC glucose-1-phosph 98.6 2E-06 4.4E-11 91.3 16.8 156 140-334 3-165 (429)
27 cd02509 GDP-M1P_Guanylyltransf 98.5 1.6E-06 3.6E-11 86.6 14.5 196 142-396 2-208 (274)
28 cd06915 NTP_transferase_WcbM_l 98.5 4E-06 8.7E-11 79.5 16.1 174 143-391 1-178 (223)
29 cd06422 NTP_transferase_like_1 98.5 2.7E-06 5.9E-11 81.4 14.8 139 143-334 2-146 (221)
30 cd06428 M1P_guanylylT_A_like_N 98.5 3.9E-06 8.5E-11 82.5 15.6 178 143-390 1-187 (257)
31 PRK14352 glmU bifunctional N-a 98.5 5.8E-06 1.3E-10 88.9 18.1 187 140-395 4-191 (482)
32 PLN02241 glucose-1-phosphate a 98.4 3E-06 6.6E-11 90.1 14.8 176 140-354 3-185 (436)
33 cd02540 GT2_GlmU_N_bac N-termi 98.4 1.6E-05 3.5E-10 76.1 18.4 180 143-395 1-182 (229)
34 TIGR02623 G1P_cyt_trans glucos 98.4 6.7E-06 1.4E-10 81.1 16.1 159 143-335 2-164 (254)
35 cd04181 NTP_transferase NTP_tr 98.4 2.8E-06 6E-11 80.4 12.8 139 143-334 1-143 (217)
36 PRK10122 GalU regulator GalF; 98.4 7.3E-06 1.6E-10 83.0 16.1 64 140-219 3-69 (297)
37 cd02508 ADP_Glucose_PP ADP-glu 98.4 3.5E-06 7.5E-11 79.8 12.7 138 143-321 1-145 (200)
38 cd02524 G1P_cytidylyltransfera 98.4 5.1E-06 1.1E-10 81.6 14.3 154 143-334 1-163 (253)
39 COG1207 GlmU N-acetylglucosami 98.4 9.5E-06 2.1E-10 84.3 16.5 186 140-396 2-189 (460)
40 cd04189 G1P_TT_long G1P_TT_lon 98.4 6.4E-06 1.4E-10 79.5 14.6 141 141-334 1-145 (236)
41 cd06426 NTP_transferase_like_2 98.4 4.9E-06 1.1E-10 79.3 12.3 138 143-333 1-141 (220)
42 PRK14360 glmU bifunctional N-a 98.3 1.7E-05 3.8E-10 84.1 17.1 184 141-395 2-186 (450)
43 PRK14357 glmU bifunctional N-a 98.3 1.5E-05 3.3E-10 84.6 16.5 177 142-395 2-179 (448)
44 PRK14358 glmU bifunctional N-a 98.3 7E-06 1.5E-10 88.4 14.0 142 140-335 7-149 (481)
45 PRK14359 glmU bifunctional N-a 98.3 2E-05 4.4E-10 83.0 17.2 179 140-395 2-180 (430)
46 KOG1322 GDP-mannose pyrophosph 98.3 1.6E-05 3.5E-10 80.1 15.2 186 139-394 8-198 (371)
47 PRK14355 glmU bifunctional N-a 98.3 1.7E-05 3.6E-10 84.7 16.5 185 140-395 3-188 (459)
48 PRK14353 glmU bifunctional N-a 98.3 4E-05 8.8E-10 81.3 18.3 142 140-334 5-147 (446)
49 cd02517 CMP-KDO-Synthetase CMP 98.3 4.8E-05 1E-09 73.7 17.2 128 140-324 1-130 (239)
50 TIGR02091 glgC glucose-1-phosp 98.2 2.6E-05 5.6E-10 80.5 15.3 196 143-395 1-206 (361)
51 PRK05450 3-deoxy-manno-octulos 98.2 6E-05 1.3E-09 73.3 16.2 185 140-394 2-193 (245)
52 TIGR01208 rmlA_long glucose-1- 98.1 5.3E-05 1.2E-09 78.0 15.2 139 143-334 2-145 (353)
53 PRK14354 glmU bifunctional N-a 98.1 0.00011 2.4E-09 78.2 17.6 182 141-395 3-185 (458)
54 TIGR01173 glmU UDP-N-acetylglu 98.1 8.1E-05 1.8E-09 78.8 16.3 61 142-219 2-63 (451)
55 COG1209 RfbA dTDP-glucose pyro 98.1 6.1E-05 1.3E-09 74.5 14.1 146 143-342 3-152 (286)
56 cd02523 PC_cytidylyltransferas 98.1 8.8E-05 1.9E-09 71.4 14.9 123 143-323 1-126 (229)
57 TIGR01479 GMP_PMI mannose-1-ph 98.1 5.6E-05 1.2E-09 81.3 14.9 196 142-396 2-210 (468)
58 TIGR01099 galU UTP-glucose-1-p 98.0 3.8E-05 8.2E-10 75.5 11.5 160 142-334 2-170 (260)
59 cd02541 UGPase_prokaryotic Pro 98.0 3.4E-05 7.4E-10 76.2 10.6 62 142-219 2-66 (267)
60 PRK09451 glmU bifunctional N-a 98.0 0.00028 6.1E-09 75.3 17.8 136 140-333 5-142 (456)
61 PRK13368 3-deoxy-manno-octulos 97.9 0.00047 1E-08 66.7 17.0 125 140-323 2-128 (238)
62 cd04198 eIF-2B_gamma_N The N-t 97.9 0.00012 2.6E-09 70.2 12.6 132 142-324 2-138 (214)
63 PF12804 NTP_transf_3: MobA-li 97.9 8.8E-05 1.9E-09 67.2 10.7 56 143-218 1-56 (160)
64 PRK13389 UTP--glucose-1-phosph 97.9 7.9E-05 1.7E-09 75.7 11.3 162 141-335 9-183 (302)
65 cd02513 CMP-NeuAc_Synthase CMP 97.9 0.00043 9.4E-09 65.9 15.6 135 140-325 1-138 (223)
66 COG0448 GlgC ADP-glucose pyrop 97.8 0.00027 5.8E-09 73.4 13.9 196 139-396 4-210 (393)
67 COG1213 Predicted sugar nucleo 97.8 3.2E-05 7E-10 75.0 6.3 67 141-222 4-70 (239)
68 cd04182 GT_2_like_f GT_2_like_ 97.8 0.00019 4.1E-09 66.0 10.6 38 141-183 1-38 (186)
69 cd02507 eIF-2B_gamma_N_like Th 97.7 0.00049 1.1E-08 66.1 13.0 62 142-220 2-67 (216)
70 TIGR00454 conserved hypothetic 97.7 6.4E-05 1.4E-09 70.9 6.3 61 141-219 1-62 (183)
71 PLN02917 CMP-KDO synthetase 97.7 0.0011 2.5E-08 67.0 15.7 182 140-395 47-237 (293)
72 PF01128 IspD: 2-C-methyl-D-er 97.6 7.3E-05 1.6E-09 72.7 5.8 64 141-219 1-65 (221)
73 KOG1460 GDP-mannose pyrophosph 97.6 0.00098 2.1E-08 66.7 12.7 180 141-391 3-192 (407)
74 PRK13385 2-C-methyl-D-erythrit 97.6 9.6E-05 2.1E-09 71.6 5.2 64 141-219 3-67 (230)
75 cd02516 CDP-ME_synthetase CDP- 97.5 0.0008 1.7E-08 64.0 10.7 40 141-183 1-40 (218)
76 PLN02728 2-C-methyl-D-erythrit 97.5 0.00016 3.5E-09 71.6 5.5 42 140-184 24-65 (252)
77 cd04183 GT2_BcE_like GT2_BcbE_ 97.4 0.00092 2E-08 64.3 10.5 38 143-183 1-41 (231)
78 COG0746 MobA Molybdopterin-gua 97.4 0.0014 3E-08 62.5 10.3 38 140-183 4-41 (192)
79 TIGR03310 matur_ygfJ molybdenu 97.3 0.00054 1.2E-08 63.5 6.1 36 143-183 2-37 (188)
80 TIGR03202 pucB xanthine dehydr 97.2 0.0018 4E-08 60.6 9.4 37 142-183 2-38 (190)
81 PRK15460 cpsB mannose-1-phosph 97.2 0.011 2.4E-07 63.8 15.8 194 141-396 6-219 (478)
82 COG0836 {ManC} Mannose-1-phosp 97.2 0.013 2.9E-07 59.5 15.2 197 141-396 2-212 (333)
83 TIGR00453 ispD 2-C-methyl-D-er 97.2 0.00041 8.8E-09 66.3 4.3 39 142-183 1-39 (217)
84 PRK14489 putative bifunctional 97.1 0.0037 7.9E-08 65.3 10.8 41 139-183 4-44 (366)
85 PRK00155 ispD 2-C-methyl-D-ery 97.1 0.00078 1.7E-08 64.9 5.3 41 140-183 3-43 (227)
86 PRK00560 molybdopterin-guanine 97.0 0.00055 1.2E-08 65.0 3.7 39 140-183 8-47 (196)
87 COG2266 GTP:adenosylcobinamide 97.0 0.0013 2.7E-08 61.3 5.9 61 141-219 1-61 (177)
88 cd02503 MobA MobA catalyzes th 97.0 0.00059 1.3E-08 63.1 3.3 38 141-183 1-38 (181)
89 PRK09382 ispDF bifunctional 2- 96.9 0.0013 2.8E-08 69.0 5.1 41 140-183 5-45 (378)
90 TIGR02665 molyb_mobA molybdopt 96.8 0.00095 2E-08 62.0 3.6 38 141-182 1-38 (186)
91 PRK00317 mobA molybdopterin-gu 96.8 0.0011 2.3E-08 62.4 3.6 39 140-182 3-41 (193)
92 COG1211 IspD 4-diphosphocytidy 96.8 0.0017 3.6E-08 63.5 4.8 64 140-218 4-68 (230)
93 PRK02726 molybdopterin-guanine 96.7 0.0011 2.5E-08 63.0 3.4 39 140-183 7-45 (200)
94 TIGR00466 kdsB 3-deoxy-D-manno 96.7 0.025 5.3E-07 55.4 12.2 125 143-325 2-128 (238)
95 PRK14490 putative bifunctional 96.4 0.0022 4.8E-08 66.9 3.5 39 140-183 174-212 (369)
96 PRK14500 putative bifunctional 96.3 0.0033 7.1E-08 65.2 4.0 39 140-183 160-198 (346)
97 cd02518 GT2_SpsF SpsF is a gly 96.3 0.061 1.3E-06 51.9 12.3 59 143-219 2-62 (233)
98 PF14134 DUF4301: Domain of un 96.2 0.021 4.5E-07 61.0 9.3 263 157-459 165-506 (513)
99 COG4750 LicC CTP:phosphocholin 95.5 0.024 5.3E-07 53.7 5.4 61 142-219 2-65 (231)
100 TIGR03584 PseF pseudaminic aci 94.8 0.53 1.2E-05 45.6 12.8 131 143-324 2-134 (222)
101 COG1210 GalU UDP-glucose pyrop 92.8 0.18 4E-06 50.4 5.3 157 143-334 7-174 (291)
102 COG2068 Uncharacterized MobA-r 92.6 0.14 3E-06 49.0 4.1 39 140-183 5-43 (199)
103 KOG1462 Translation initiation 82.9 1.1 2.3E-05 46.9 3.2 66 140-220 9-77 (433)
104 COG1861 SpsF Spore coat polysa 78.7 4 8.6E-05 39.9 5.3 64 140-222 3-69 (241)
105 PF02348 CTP_transf_3: Cytidyl 42.8 78 0.0017 29.6 6.8 37 142-184 1-37 (217)
106 COG1212 KdsB CMP-2-keto-3-deox 41.5 91 0.002 30.8 6.9 91 140-241 3-105 (247)
107 PF04405 ScdA_N: Domain of Unk 40.6 41 0.00089 25.6 3.5 42 6-48 13-54 (56)
108 COG1535 EntB Isochorismate hyd 35.8 2.6E+02 0.0057 26.8 8.7 101 170-293 49-150 (218)
109 PF14969 DUF4508: Domain of un 31.0 1.1E+02 0.0024 26.2 4.9 29 51-80 59-87 (98)
110 TIGR03092 SASP_sspI small, aci 26.5 1.5E+02 0.0032 23.5 4.5 48 28-77 6-62 (65)
111 PF13106 DUF3961: Domain of un 22.8 48 0.001 23.6 1.1 14 220-233 4-20 (40)
112 PF06258 Mito_fiss_Elm1: Mitoc 21.4 3.4E+02 0.0074 27.7 7.6 24 198-221 182-205 (311)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=2.6e-103 Score=845.29 Aligned_cols=448 Identities=72% Similarity=1.178 Sum_probs=416.5
Q ss_pred hhccccccccCCchhhhhccCCChhHHHHHHHHHHCCCccccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 012230 14 KLGIDGAFADSAPNLKKNLHLLSSEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTA 93 (468)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~ 93 (468)
++-++....-+.+.+..++..+|++.++++++|.++||+|||+||++++.+++||++|++||..+|..|++++..|+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~ 81 (615)
T PLN02830 2 ALSVASKSDSSVPSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNA 81 (615)
T ss_pred CCcccccccccccccccccccCChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 44556666666788999999999999999999999999999999999655899999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhhceEEEEecCCCCCcCCcCCCcccCCccCCCCcch
Q 012230 94 RELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCF 173 (468)
Q Consensus 94 ~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~ 173 (468)
.+++..+..+.++|+.+.|.+|.+..+++++....+|++.|+++|+|||||+||||||||||+++||+++|+++.+++||
T Consensus 82 ~~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~ 161 (615)
T PLN02830 82 KELLADSKEGVNPFEGWTPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCY 161 (615)
T ss_pred HHHHhhcccCCCchhhcccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcH
Confidence 99987665567789999876788877788777778899999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCC
Q 012230 174 LQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK 253 (468)
Q Consensus 174 l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~ 253 (468)
||++++||+++|+++.+...+..+.||||||||+.||++|++||++|+|||+++++|+||+|+++||++.++|++++++.
T Consensus 162 lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~ 241 (615)
T PLN02830 162 LQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPN 241 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCC
Confidence 99999999999999876534445789999999999999999999999999999999999999999999888899999444
Q ss_pred CCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCCCCcccccE
Q 012230 254 NKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (468)
Q Consensus 254 ~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i 333 (468)
++++++|+|+||||+|.+|++||+|++|.++|++|+||+||||+|++++||.|||||+.++++|++|||+|+|.|++|++
T Consensus 242 d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi 321 (615)
T PLN02830 242 DPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAI 321 (615)
T ss_pred CCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCCCcccceE
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCC
Q 012230 334 TRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDAS 413 (468)
Q Consensus 334 ~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~ 413 (468)
|++++.||+..++||||+|++++++.+++|+|++.++++|++|||||||+|++|++|++.|+++.+.||+||||||.|.+
T Consensus 322 ~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~ 401 (615)
T PLN02830 322 AKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDAT 401 (615)
T ss_pred EEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCC
Confidence 99888899977678999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCCcc
Q 012230 414 KTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA 461 (468)
Q Consensus 414 ~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~ 461 (468)
++.++.++++||+|||+++.+..+.++||+.++||.+|+||||+..+|
T Consensus 402 ~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a 449 (615)
T PLN02830 402 KTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADG 449 (615)
T ss_pred CceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHh
Confidence 999999999999999999999888899999889999999999994433
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=1.1e-91 Score=736.95 Aligned_cols=398 Identities=24% Similarity=0.350 Sum_probs=343.1
Q ss_pred hHHHHHHHHHHCCCccccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 012230 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTG 117 (468)
Q Consensus 38 ~~~~l~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~ 117 (468)
+.++++++|.++||+|||+||++ ++++||++|++||.++|+.+ +. +.+++++. +. ..+++.+.| +|.+
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~--ls~~e~~~L~~qL~~iD~~~---l~---~~~~~~~~-~~--~~~~~~i~P-~p~~ 88 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDE--LSPEERDLLVRDIESLDLPR---ID---RIIRCSLR-SQ--GLPVPAIEP-VPEN 88 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhh--CCHHHHHHHHHHHHhcCHHH---HH---HHHHHHhh-cc--CCchhccCC-CChh
Confidence 45679999999999999999999 99999999999999999753 22 23333332 11 235666775 5655
Q ss_pred ccccCC---ChhhhHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhc
Q 012230 118 EVLKFG---DDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLA 192 (468)
Q Consensus 118 ~~~~~~---~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~ 192 (468)
...+.. .....+|+++|+++|+ |||||+||||||||||+++||+++|+++.+++||||++++||+++|+++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~ 168 (493)
T PLN02435 89 SVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQAS 168 (493)
T ss_pred hccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhc
Confidence 433332 2456789999999995 99999999999999999999999999999999999999999999999997542
Q ss_pred c---CCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHh
Q 012230 193 E---GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVH 269 (468)
Q Consensus 193 ~---g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~ 269 (468)
. +..+.||||||||+.||++|++||++|+|||+++++|+||+|+++||++ .+|++++ +++++++|+|+||||+|
T Consensus 169 ~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l--~~~~~i~~~P~GnGgiy 245 (493)
T PLN02435 169 SEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIM--ETPFKVAKAPDGNGGVY 245 (493)
T ss_pred ccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCccc--CCCcccccCCCCCcHHH
Confidence 1 2356899999999999999999999999999999999999999999995 7999999 88999999999999999
Q ss_pred HHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCC-CCcccccEEEEecCCCceeEEEE
Q 012230 270 ALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINV 348 (468)
Q Consensus 270 ~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~~G~i~~~~~~~g~~~v~~V 348 (468)
.+|.+||+|++|.++|++||||+||||+|++++||.|||||+.++++|++|||+|+ |.|++|++|+. .++|++.| |
T Consensus 246 ~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~-~~~g~~~v--v 322 (493)
T PLN02435 246 AALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRR-GKGGPLTV--V 322 (493)
T ss_pred HHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEe-cCCCCEEE--E
Confidence 99999999999999999999999999999999999999999999999999999875 89999999975 35888865 9
Q ss_pred ecCCcchhHhhcCCCC-CCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCCCCcccCchhHh
Q 012230 349 EYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTSFKSSTRLE 424 (468)
Q Consensus 349 EYsel~~~l~~~~~~~-g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk---~~d~~~~~~~~~~klE 424 (468)
|||||+++++++++++ |+|. +.+||||||||++++++++.+.....+|.++..| |.|. ..+.+|||
T Consensus 323 EYsEl~~~~~~~~~~~~g~L~------~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~----~~ngiK~E 392 (493)
T PLN02435 323 EYSELDQAMASAINQQTGRLR------YCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHG----YTMGLKLE 392 (493)
T ss_pred EeccCCHHHHhccCccccccc------cchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCC----CcceEEee
Confidence 9999999999988775 7664 4489999999999999887654334588887665 4443 24788999
Q ss_pred hhhccccccCCCCCceeEEEecCCcceecccCCCCcccccCC
Q 012230 425 CMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVNS 466 (468)
Q Consensus 425 ~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~~~~~~ 466 (468)
+||||+ ||.++++++++|+|++|||||||++|+++|+|+
T Consensus 393 ~FiFDv---f~~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~ 431 (493)
T PLN02435 393 QFIFDA---FPYAPSTALFEVLREEEFAPVKNANGSNFDTPE 431 (493)
T ss_pred eeeecc---hhhcCceEEEEEchhhccCcccCCCCCCCCCHH
Confidence 999995 556789999999999999999999999999985
No 3
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=6.7e-90 Score=690.34 Aligned_cols=315 Identities=68% Similarity=1.107 Sum_probs=298.5
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhC
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~ 220 (468)
+|+|+||||||||||+++||+++|+++.+++||||++++||+++|+++.+ +.++.||||||||+.||++|++||++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~---~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK---GEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc---cCCCceeEEEECCCchhHHHHHHHHHC
Confidence 58999999999999999999999999899999999999999999998863 335689999999999999999999999
Q ss_pred CCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccc
Q 012230 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (468)
Q Consensus 221 ~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~ 300 (468)
+|||+++++|+||+|+++||+++.+|++....+++++++|+|+||||+|.+|.++|+||+|.++|++|++|+||||+|++
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 99999999999999999999977899983222788999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccce
Q 012230 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (468)
Q Consensus 301 ~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNi 380 (468)
++||.|+|+++.+++||++|||+|.|.|++|++|++++.||+++|+|||||||++++++++.++|+..+.+||++|||||
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 99999999999999999999999999999999999877899999999999999999999998888877778899999999
Q ss_pred eeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCC
Q 012230 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 458 (468)
Q Consensus 381 nn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~ 458 (468)
|+|+|++++|.+.++++.+.+|+++||||.|.+++.+++|+||||||||++++|+.+.++++++|+||.|||||||+.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCCC
Confidence 999999999999999888899999999999999999999999999999999999999999999999999999999974
No 4
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=3.3e-86 Score=697.29 Aligned_cols=401 Identities=23% Similarity=0.274 Sum_probs=335.6
Q ss_pred HHHHHHCCCccccccccCCCCCHHHHHHHHHHH-H---hcCCCCCCchHHHHHHHHHHHhhccCC-----CCCCCCCCCC
Q 012230 43 AKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQV-A---KLNSSYPGGLKSYIKTARELLADSKAG-----KNPFDGFTPS 113 (468)
Q Consensus 43 ~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL-~---~id~~~~~~l~~~~~~~~~~l~~s~~~-----~~~~~~~~~~ 113 (468)
+++|.++||+|||+||++ ++++||++|..|| + .+|+ ..+...++.+......+... ...-+.+.|
T Consensus 2 ~~~l~~~gQ~hl~~~~~~--l~~~e~~~l~~ql~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 75 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKR--RSEGEFTPLATQILSSLTNVDF---KHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEP- 75 (482)
T ss_pred hhhhhhcCHHHHHHHHHh--CCHHHHHHHHHHHHHHhhccCH---HHHHHHHHHHhhhhhcccccccccccccccccCC-
Confidence 578999999999999999 9999999999999 6 5664 34555666554332221110 001123443
Q ss_pred CCCCcc--ccCCChhhhHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhh
Q 012230 114 VPTGEV--LKFGDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 189 (468)
Q Consensus 114 vp~~~~--~~~~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~ 189 (468)
+|.... +...++++.+|+++|+++|+ |||||+||||+|||||++.||+++|+.+.+++||||++++||++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~ 155 (482)
T PTZ00339 76 PNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAV 155 (482)
T ss_pred CCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhh
Confidence 344322 22234667899999999999 79999999999999999999999999877899999999999999999986
Q ss_pred hhcc-CCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhH
Q 012230 190 RLAE-GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV 268 (468)
Q Consensus 190 ~~~~-g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i 268 (468)
+++. +....||||||||++||+.|.+||++|+|||+++++|+||.|+++||++.++|++++ +++++++|+|+||||+
T Consensus 156 ~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill--~~~~~i~~~P~GnGgi 233 (482)
T PTZ00339 156 AVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIM--SSQGSLCTAPGGNGDV 233 (482)
T ss_pred cccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCccc--CCCCceeeCCCCCcHH
Confidence 5421 124589999999999999999999999999999999999999999999877899999 8888999999999999
Q ss_pred hHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCC-cceEeeeeCCCCcccccEEEEecCCCceeEEE
Q 012230 269 HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQY-HVNSLAVPRKAKEAIGGITRLTHADGRSMVIN 347 (468)
Q Consensus 269 ~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~-~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~ 347 (468)
|.+|.++|+|++|.++|++||||+||||+|++++||.|||||+.+++ +|+.+||+|.|.|++|++|++ +|++.|
T Consensus 234 y~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~---~g~~~v-- 308 (482)
T PTZ00339 234 FKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLK---DYEWQV-- 308 (482)
T ss_pred HHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEe---CCcccE--
Confidence 99999999999999999999999999999999999999999999999 999999988899999999986 888866
Q ss_pred EecCCcchhHhhcCCCC-CCCCCCCCCCCCccceeeEEEehhhhHHHHhh-cCCccccccCCc---ccCCCCCcccCchh
Q 012230 348 VEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKK-TGGAIKEFVNPK---YKDASKTSFKSSTR 422 (468)
Q Consensus 348 VEYsel~~~l~~~~~~~-g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~-~~~~lp~~vnpk---~~d~~~~~~~~~~k 422 (468)
|||+||++++++.++++ |.+ .|++||||||||+++++.++++. ....+|.++..| |.|... +.++.+|
T Consensus 309 vEYsEi~~~~~~~~~~~~g~l------~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-~~png~K 381 (482)
T PTZ00339 309 VEYTEINERILNNDELLTGEL------AFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-DKTMGIK 381 (482)
T ss_pred EEEeccChhhhhcccccCCee------cccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-CCcceee
Confidence 99999999998876542 443 34589999999999999887652 233588887655 445322 4568899
Q ss_pred HhhhhccccccCCCCCceeEEEecCCcceecccCCCCcccccCC
Q 012230 423 LECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVNS 466 (468)
Q Consensus 423 lE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~~~~~~ 466 (468)
||+||||+ ||.++++++++|+|++|||||||++|+++|+|.
T Consensus 382 ~E~FiFDv---f~~~~~~~~~ev~R~~eFsPlKNa~g~~~d~p~ 422 (482)
T PTZ00339 382 LEAFIFDI---FRYAKNVLILEVDREDEFAPIKNADGAAADTIL 422 (482)
T ss_pred ehhhhhhH---HHhccccceeeechhhccccccCCCCCCCCCHH
Confidence 99999996 455679999999999999999999999999884
No 5
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.1e-78 Score=623.64 Aligned_cols=397 Identities=30% Similarity=0.453 Sum_probs=334.3
Q ss_pred HHHHHHHHHHCCCccccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc
Q 012230 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (468)
Q Consensus 39 ~~~l~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~ 118 (468)
..++..+|.++||+|||++|++ ++++++.+|++||+.++..++.++.. ..+.+.. .+-...+ |+|...
T Consensus 3 ~~~~~~~l~~~Gq~~l~~~w~e--L~~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~~~-------~~~~~~~-p~p~~~ 70 (477)
T KOG2388|consen 3 RTKLHLILLEAGQSHLFTQWPE--LSEADKESLLDQIEVLNLSRIHGLQR--ISANEDS-------KPVGEIR-PVPESK 70 (477)
T ss_pred hhHHHHHHHHcChHhHhhhchh--cCHHHHHHHHHHHHhhcccccchhhh--cChhhcc-------CcccccC-CCCccc
Confidence 4568889999999999999999 88999999999999999988765433 2222211 1112222 344432
Q ss_pred ccc---CCChhhhHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhcc
Q 012230 119 VLK---FGDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (468)
Q Consensus 119 ~~~---~~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~ 193 (468)
... ...++..+|+..|+.+|+ ++|+++||||||||||++.||+++|+++.+++||||+++++|++++.++... .
T Consensus 71 ~~~~~~~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~-~ 149 (477)
T KOG2388|consen 71 SWPLKERGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMA-V 149 (477)
T ss_pred cceecccCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhh-h
Confidence 221 223444569999999998 9999999999999999999999999999999999999999999999988766 3
Q ss_pred CCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHh
Q 012230 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (468)
Q Consensus 194 g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~ 273 (468)
+++..||||||||..|++.|.+||+.|+|||+.++||+||+|+++||++ .+|++++ +.+.+++++|+||||+|+++.
T Consensus 150 ~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~l--e~k~~~a~ap~gngg~y~ai~ 226 (477)
T KOG2388|consen 150 SDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFIL--EQKNSLAAAPDGNGGLYRAIK 226 (477)
T ss_pred ccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceec--cCccchhcCCCCCcHHHHHHH
Confidence 4457999999999999999999999999999999999999999999995 6888999 889999999999999999999
Q ss_pred hcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeC-CCCcccccEEEEecCCCceeEEEEecCC
Q 012230 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQ 352 (468)
Q Consensus 274 ~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~~G~i~~~~~~~g~~~v~~VEYse 352 (468)
++ |++|.++|++|+|||||||+|++++||.|+||++.++++++.|+|+| .|.|.+|.+|...+ |.+. ||||||
T Consensus 227 ~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~--G~~~--vvEYsE 300 (477)
T KOG2388|consen 227 DQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQ--GTPL--VVEYSE 300 (477)
T ss_pred hh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCC--Ccee--EEEecc
Confidence 98 99999999999999999999999999999999999999999999996 68999999998621 8665 499999
Q ss_pred cchhHhhcCCCC-CCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCC----CCcccCchhHh
Q 012230 353 LDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDAS----KTSFKSSTRLE 424 (468)
Q Consensus 353 l~~~l~~~~~~~-g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk---~~d~~----~~~~~~~~klE 424 (468)
++.+++.++.++ |+ +.+++||||||+|+++++++........+|+++.-| |.|.+ ++..++.+|+|
T Consensus 301 i~~~~a~~~~~d~g~------l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E 374 (477)
T KOG2388|consen 301 LDAELAKAKAPDGGR------LLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLE 374 (477)
T ss_pred cCHHHHhhcccccCc------cccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEE
Confidence 999999999888 44 457799999999999999887654434455554322 33321 23345668999
Q ss_pred hhhccccccCCCCCceeEEEecCCcceecccCCCCcccccCC
Q 012230 425 CMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVNS 466 (468)
Q Consensus 425 ~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~~~~~~ 466 (468)
.|||| +||.++++++++|+|++||||+||+..+..|+|+
T Consensus 375 ~fifd---vf~~~k~f~~meV~Re~efSPlKng~~~~~D~p~ 413 (477)
T KOG2388|consen 375 QFIFD---VFPSAKKFGLMEVPREEEFSPLKNGGKSSTDNPS 413 (477)
T ss_pred eeeee---ecccccceeEEecchhhhcCccccCCCCCCCChh
Confidence 99999 4666899999999999999999999999999986
No 6
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=6.1e-77 Score=603.26 Aligned_cols=313 Identities=28% Similarity=0.446 Sum_probs=285.5
Q ss_pred hHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEc
Q 012230 128 INYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMT 205 (468)
Q Consensus 128 ~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMt 205 (468)
++|+++|+++|+ ++|+|+||||+|||||++.||+++|+...+++||||+++++|++++.++++. +++...|||+|||
T Consensus 1 ~~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~-~~~~~~ip~~imt 79 (323)
T cd04193 1 KEWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEA-SGKKVPIPWYIMT 79 (323)
T ss_pred ChHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEEc
Confidence 368999999999 9999999999999999999999999987789999999999999999999755 4566799999999
Q ss_pred CccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCC
Q 012230 206 SDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG 285 (468)
Q Consensus 206 S~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G 285 (468)
|++||+.|.+||++++|||+++++|+||.|+++||++ .+|++++ +++++++|+|+||||+|.+|.+||+|++|.++|
T Consensus 80 S~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l--~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G 156 (323)
T cd04193 80 SEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILL--EEKGKIAMAPNGNGGLYKALQTAGILEDMKKRG 156 (323)
T ss_pred ChhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCcccc--CCCCccccCCCCchHHHHHHHHCChHHHHHhCC
Confidence 9999999999999999999999999999999999994 7899999 778899999999999999999999999999999
Q ss_pred ceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCC
Q 012230 286 LKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPD 364 (468)
Q Consensus 286 ~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~ 364 (468)
++|++|+||||+|++++||.||||++.+++|+++|||+|+ |.|++|++|++ ||++.+ |||+|++++++.+++++
T Consensus 157 ~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~---~g~~~v--vEysel~~~~~~~~~~~ 231 (323)
T cd04193 157 IKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV--VEYSEISDELAEKRDAD 231 (323)
T ss_pred CEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE---CCeEEE--EEeecCCHHHHhccCcC
Confidence 9999999999999999999999999999999999999987 99999999987 999887 99999999999988777
Q ss_pred CCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCccc---CCCCC----cccCchhHhhhhccccccCCCC
Q 012230 365 GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK---DASKT----SFKSSTRLECMMQDYPKTLPPS 437 (468)
Q Consensus 365 g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~---d~~~~----~~~~~~klE~~i~D~~~~f~~~ 437 (468)
|++. +++||||+|||+++++++.++.....+|.|+++|.. |.++. ...+++|||+||||++++|
T Consensus 232 g~l~------f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~--- 302 (323)
T cd04193 232 GELQ------YNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFA--- 302 (323)
T ss_pred CcEe------cccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhC---
Confidence 7763 558999999999999999887655579999998843 43222 3456789999999976654
Q ss_pred CceeEEEecCCcceecccCCC
Q 012230 438 AKVGFTVMDTWLAYAPVKNNP 458 (468)
Q Consensus 438 ~~~~~~~v~R~~eFsPvKN~~ 458 (468)
+++.+++|+|++||+||||++
T Consensus 303 ~~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 303 KNFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred CceEEEEEChhhccccCcCCC
Confidence 689999999999999999985
No 7
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=6e-74 Score=573.26 Aligned_cols=287 Identities=19% Similarity=0.234 Sum_probs=256.3
Q ss_pred hhceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 138 l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
|+|||||+||||||||||+++||+++|+ .+++||||++++||+++++.++ +.||||||||+.||++|.+||
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l 71 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKTYG-------VDVPLVLMNSFNTDEDTKKIL 71 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCcchHHHHHHH
Confidence 4689999999999999999999999998 4899999999999999999875 689999999999999999999
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceecc-CCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~-~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
++|++ ++++|++|+|+++||++ .+|++.+. ..++++++|+|+||||+|.+|.+||+|++|+++|+||++|+||||
T Consensus 72 ~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN 147 (300)
T cd00897 72 KKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN 147 (300)
T ss_pred HHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc
Confidence 99875 78899999999999996 57887772 236789999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHhcCCcceEeeeeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCC
Q 012230 297 GLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (468)
Q Consensus 297 ~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~ 375 (468)
|++++||.|+|||+.+++++++|||+|+ +.|++|++|++ +|++++ |||+|+|++.+.... |. ..|.+
T Consensus 148 -L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~---~g~~~v--vEyse~p~e~~~~~~--~~----~~~~~ 215 (300)
T cd00897 148 -LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHVDEFK--SI----KKFKI 215 (300)
T ss_pred -ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE---CCEEEE--EEeccCCHHHHHhhc--Cc----ccceE
Confidence 8999999999999999999999999975 77899999987 999987 999999999876543 22 23554
Q ss_pred CccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceeccc
Q 012230 376 FPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVK 455 (468)
Q Consensus 376 f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvK 455 (468)
+|||||||+++++++.++.....+|.+++.|.++++ .+++|||+||||++.+| +++.+++|+|+ ||+|||
T Consensus 216 --~nt~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~----~~~~qlE~~i~da~~~~---~~~~~~eV~R~-rF~PvK 285 (300)
T cd00897 216 --FNTNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGG----LNVIQLETAVGAAIKNF---DNALGVNVPRS-RFLPVK 285 (300)
T ss_pred --EEEeEEEEEHHHHHHHHHhccCCCCeeecccccCCC----CCEEEeHhHhhhHHHhC---CCcEEEEEChh-hcCCCC
Confidence 599999999999999887655679999999977543 68899999999987775 57888999996 799999
Q ss_pred CCCC
Q 012230 456 NNPE 459 (468)
Q Consensus 456 N~~~ 459 (468)
|+++
T Consensus 286 n~~d 289 (300)
T cd00897 286 TTSD 289 (300)
T ss_pred ChHH
Confidence 9975
No 8
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.6e-72 Score=586.95 Aligned_cols=339 Identities=29% Similarity=0.398 Sum_probs=266.9
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccC
Q 012230 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVAL 163 (468)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~l 163 (468)
+..|+..+.++++++......|+.+.++.|. ..+++++.....| +.|..+++ |+|||+||||||||||+++||+++
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~ 79 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPE-EVVDYESLKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLI 79 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTG-CEEEHHHHHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGS
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChh-hcCChhHhccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCCCcce
Confidence 5678899999998755566788888865443 3444433222224 45666554 999999999999999999999999
Q ss_pred CccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeec
Q 012230 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (468)
Q Consensus 164 P~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~ 243 (468)
|+ .+++||||++++|+++++..|+ +.|||+||||+.||++|++||++ |||++.+ |++|+|+++||++
T Consensus 80 ~v--~~~~t~ldl~~~qi~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~- 146 (420)
T PF01704_consen 80 PV--REGKTFLDLIVEQIEALNKKYG-------VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAID- 146 (420)
T ss_dssp EE--ETTEEHHHHHHHHHHHHHHHHT-------TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEE-
T ss_pred ec--CCcccHHHHHHHHHHHHhcccc-------ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEe-
Confidence 98 5799999999999999998885 68999999999999999999999 9999877 9999999999996
Q ss_pred CCCceeccCCC--C-CccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEe
Q 012230 244 NDARLAMDPKN--K-YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSL 320 (468)
Q Consensus 244 ~~gki~l~~~~--~-~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~k 320 (468)
.+|++.+..+. + ...+|+|+||||+|.+|..||+|++|+++|++|+||+|||| |++++||.|+||++++++++++|
T Consensus 147 ~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~e 225 (420)
T PF01704_consen 147 ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGME 225 (420)
T ss_dssp TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEE
T ss_pred CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhhee
Confidence 57776662211 1 12468999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHhhc-CCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcC
Q 012230 321 AVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRAT-GFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTG 398 (468)
Q Consensus 321 vv~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~-~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~ 398 (468)
||+|+ |.|++|++|+. +|++++ |||+|++++.... ++. .++.+| ||||+||++++++++++...
T Consensus 226 vv~Kt~~dek~Gvl~~~---~G~~~v--vEysqip~~~~~~~~~~-------~~~~~F--ntnNi~~~l~~l~~~~~~~~ 291 (420)
T PF01704_consen 226 VVPKTSPDEKGGVLCRY---DGKLQV--VEYSQIPKEHMAEFKDI-------KGFLLF--NTNNIWFSLDFLKRLLERDE 291 (420)
T ss_dssp EEE-CSTTTSSEEEEEE---TTEEEE--EEGGGS-HHGHHHHTST-------TTSBEE--EEEEEEEEHHHHHHHHHTTT
T ss_pred eeecCCCCCceeEEEEe---CCccEE--EEeccCCHHHHHhhhcc-------ccceEE--EeceeeEEHHHHHHHHHhcc
Confidence 99985 78999999986 999987 9999999995433 332 345555 99999999999999998877
Q ss_pred CccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCC
Q 012230 399 GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 399 ~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
..||+|+|+|.++... ...+.+|||++|++++..| ++ ..+++|+| +||+||||+++
T Consensus 292 ~~Lp~h~a~Kki~~~d-~~~~~~q~Et~i~~~i~~f--~~-~~~v~V~R-~rF~PvKn~~d 347 (420)
T PF01704_consen 292 LQLPIHVAKKKIPYVD-NGIKVIQFETAIGFAIFQF--DN-SFAVEVPR-DRFAPVKNTSD 347 (420)
T ss_dssp CCS-EEEEEEESSEEC-TEEEEEEEECGGGGGGGGC--TS-EEEEEE-G-GG--B-SSHHH
T ss_pred ccCccEEcchhccccc-CCccEEeehhhhhchHhhc--cC-cEEEEEcH-HHcCCccccCc
Confidence 8999999999763222 2357889999999988887 34 45569999 99999999987
No 9
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=4.3e-71 Score=578.29 Aligned_cols=334 Identities=19% Similarity=0.196 Sum_probs=275.1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChh-hhHHHHHhHHhhhceEEEEecCCCCCcCCcCCCcccCC
Q 012230 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDT-FINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALP 164 (468)
Q Consensus 86 l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~-~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP 164 (468)
+..|.....++++.. .+..+|+.+.|+ +.+...+|++-. ...-.....++|+|+|||+||||||||||+++||+++|
T Consensus 26 ~~~f~~~~~~~~~~~-~~~i~~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLnGGlGTrmG~~~PKs~i~ 103 (469)
T PLN02474 26 KSGFISLVSRYLSGE-AQHIEWSKIQTP-TDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIE 103 (469)
T ss_pred HHHHHHHHHHHHhCC-CCeecHHHccCC-chhhCcChhhccccccchhHHHHHHhcEEEEEecCCcccccCCCCCceeEE
Confidence 445566666666543 335678888753 444444443211 11112235668899999999999999999999999998
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecC
Q 012230 165 AETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDN 244 (468)
Q Consensus 165 ~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~ 244 (468)
+ .+++||||++++||+++++.|+ +.||||||||+.||++|++||++|++| +.+|++|+|+++||++ .
T Consensus 104 v--~~~~sfldl~~~qi~~l~~~~g-------~~vPl~iMtS~~T~~~T~~~l~k~~~~---~~~i~~F~Q~~~P~l~-~ 170 (469)
T PLN02474 104 V--RNGLTFLDLIVIQIENLNKKYG-------CNVPLLLMNSFNTHDDTQKIVEKYTNS---NIEIHTFNQSQYPRVV-A 170 (469)
T ss_pred c--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCchhHHHHHHHHHcCCC---ccceEEEecCceeeEe-c
Confidence 7 5899999999999999999885 689999999999999999999999987 4589999999999996 5
Q ss_pred CCceeccCCCC---CccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEee
Q 012230 245 DARLAMDPKNK---YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLA 321 (468)
Q Consensus 245 ~gki~l~~~~~---~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kv 321 (468)
+|++.+ +.+ ...+|+|+||||+|.+|+.||+|++|+++|+||+||+|||| |++++||.|+|||+.+++++++||
T Consensus 171 ~~~~p~--~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ev 247 (469)
T PLN02474 171 DDFVPW--PSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEV 247 (469)
T ss_pred CCCCcc--cccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEEEE
Confidence 677766 333 35669999999999999999999999999999999999999 899999999999999999999999
Q ss_pred eeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCc
Q 012230 322 VPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA 400 (468)
Q Consensus 322 v~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~ 400 (468)
++|+ +.+++|++|.. +|++++ +||+|+|++.+.... |. ..|.+ +|||||||+|+++++.++.....
T Consensus 248 ~~Kt~~d~kgG~l~~~---dgk~~l--vEysqvp~e~~~~f~--~~----~kf~~--fNtnn~w~~L~~l~~~~~~~~l~ 314 (469)
T PLN02474 248 TPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFK--SI----EKFKI--FNTNNLWVNLKAIKRLVEADALK 314 (469)
T ss_pred eecCCCCCCccEEEEE---CCEEEE--EEEecCCHHHHHhhc--cc----cccee--eeeeeEEEEHHHHHHHhhcCCCC
Confidence 9976 67778888876 999987 999999999876543 22 23654 59999999999999988764455
Q ss_pred cccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCC
Q 012230 401 IKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 401 lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
++.++|||..|+ .+.+|||+||||++++| +++.+++|+|+ ||+||||+++
T Consensus 315 ~~~I~n~k~~~g-----~kv~q~Et~ig~ai~~f---~~~~~v~VpR~-rF~PVK~~~d 364 (469)
T PLN02474 315 MEIIPNPKEVDG-----VKVLQLETAAGAAIRFF---DNAIGINVPRS-RFLPVKATSD 364 (469)
T ss_pred ceeecCCCCCCC-----eeEEEeHHHHHHHHHhC---CCceEEEEchh-hccCCCCCCC
Confidence 566889998864 47789999999998887 46788999995 6999999985
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-65 Score=524.31 Aligned_cols=384 Identities=22% Similarity=0.268 Sum_probs=303.0
Q ss_pred hhHHHHHHHHHHCCCccccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhh-ccCCCCCCCCCCCCCC
Q 012230 37 SEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVP 115 (468)
Q Consensus 37 ~~~~~l~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~-s~~~~~~~~~~~~~vp 115 (468)
..+......+.+..|.|+|..|.. +++.+..+.-+++..+|. ++...++++.+ +......|+.++|+.|
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~--~s~~~~~~~~~~~~~~d~--------~f~l~~~~ll~~s~~s~~~~~ki~~~~~ 82 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQ--SSEKQALKSFEKLLLLDI--------FFFLFSRYLLNTSKASTQEWDKIRPPNP 82 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhh--hchHHHHhhhhhhhhhHH--------HHHHHHHHHhhcCcccceeecccCCCCh
Confidence 456677889999999999999998 777555666677666663 34444455543 3334557788876433
Q ss_pred CCccccCCChhhhHHHHHhHHh--hhceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhcc
Q 012230 116 TGEVLKFGDDTFINYEQAGVKE--AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (468)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~G~~~--l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~ 193 (468)
. ..+.+++...+ ++ |+.. ++|+|||+||||||||||+++||++++++ +|+||||+++|+|+.++.+|+
T Consensus 83 d-~~~~~~~~~~~-~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~~~---- 152 (472)
T COG4284 83 D-DVVDYEKKILE-GW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQYN---- 152 (472)
T ss_pred h-hhccchhhccc-hh--hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHHhC----
Confidence 3 33444333322 22 5555 56999999999999999999999999996 899999999999999999996
Q ss_pred CCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCc-cccccCCChhHhHHH
Q 012230 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYR-IQTKPHGHGDVHALL 272 (468)
Q Consensus 194 g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~-i~~~P~G~G~i~~aL 272 (468)
++|||||||| .|+++|..||+.++|||+++.+|.||+|+.+||+.+.+|++++ ...++ ++|+|+||||+|.+|
T Consensus 153 ---~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~--~~~~~~~~~~P~GnG~lf~aL 226 (472)
T COG4284 153 ---VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFL--ESDDSNLAWYPPGNGDLFKAL 226 (472)
T ss_pred ---CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCcccc--ccCCcccccCCCCCccHHHHH
Confidence 7899999999 9999999999999999999999999999999976678999998 44444 999999999999999
Q ss_pred hhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeC-CCCcccccEEEEecCCCceeEEEEecC
Q 012230 273 YSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYN 351 (468)
Q Consensus 273 ~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~~G~i~~~~~~~g~~~v~~VEYs 351 (468)
..||++++|.++|+||++|+|||| |++++||.|+|+++.+++++++|++.| ++.+++|.++.. +|+.++ +||+
T Consensus 227 ~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~---~g~~rl--lEys 300 (472)
T COG4284 227 KSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY---DGKLRL--LEYS 300 (472)
T ss_pred HhcchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe---CCceEE--EEEe
Confidence 999999999999999999999999 999999999999999999999999996 588999988866 898765 9999
Q ss_pred CcchhHhhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCC-------CCcccCchhHh
Q 012230 352 QLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDAS-------KTSFKSSTRLE 424 (468)
Q Consensus 352 el~~~l~~~~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~-------~~~~~~~~klE 424 (468)
|++...+.+...+|. +.+| |+||+|+.+..+..+.+.....+|++.+-|..... +...++..|||
T Consensus 301 ev~~~~~~~~~s~~~------~~~~--n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe 372 (472)
T COG4284 301 EVPNEHREEFTSDGK------LKYF--NTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFE 372 (472)
T ss_pred cCChhHhhhhccccc------eeee--ccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccccccchhhcc
Confidence 999988776655554 4566 55555554444443444444567776654432211 11223455899
Q ss_pred h-hh-ccccccCCCCCceeEEEecCCcceecccCCCCcc
Q 012230 425 C-MM-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA 461 (468)
Q Consensus 425 ~-~i-~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~ 461 (468)
. || ||.+.+= ..++.+++.|||..||+|+||-.++.
T Consensus 373 ~~FI~fDlF~~~-s~~~~~~~~vpR~~~f~Plkn~~~~~ 410 (472)
T COG4284 373 NEFIPFDLFLYK-SDENGGLLLVPRFGEFSPLKNLEGSH 410 (472)
T ss_pred ccccceeeeEEE-ecCCCceEeccccCCCCchhhccCCC
Confidence 6 99 9964442 22889999999999999999999883
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=2.6e-63 Score=491.95 Aligned_cols=265 Identities=31% Similarity=0.370 Sum_probs=235.1
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhC
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~ 220 (468)
+|+|+||||+|||||++.||+++|+.+.+|+||||+++++|++++.++.+ +..|||+||||++||+.|.+||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~-----~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLY-----SCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhc-----CCCCCEEEEcCchhHHHHHHHHHHc
Confidence 68999999999999999999999998889999999999999999988841 2579999999999999999999998
Q ss_pred CCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccc
Q 012230 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (468)
Q Consensus 221 ~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~ 300 (468)
+ ++.++|++|+|+++||++ .+|...+ +++++++|+|+||||+|.+|..+|+|++|+++|++|++|+||||+++.
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~-~~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKN-DDDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred C---CCCCceEEEEeCCceEEe-CCCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 8 567899999999999996 5676777 778889999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcCCcceEeeeeCCCC-cccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccc
Q 012230 301 KAIPASLGVSATKQYHVNSLAVPRKAK-EAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (468)
Q Consensus 301 ~~Dp~~lG~~~~~~~~~~~kvv~r~~~-e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gN 379 (468)
++||.++||++.+++++++++|+|+.. +++|++|.. .+|++.+ |||+|++++++++++++++..+..++++++||
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~--~~g~~~~--vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n 225 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIAN--INGRVQL--LEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFN 225 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEe--cCCCEEE--EEeccCCHHHHhccccccCcCCCCceeeccce
Confidence 999999999999999999999998755 566666654 1388765 99999999999888776665544558888999
Q ss_pred eeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccC
Q 012230 380 INQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKN 456 (468)
Q Consensus 380 inn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN 456 (468)
||||||+|++|+++++ |++++| +++.+++|+|++||+||||
T Consensus 226 ~~~~~~~l~~l~~~~~---------------------------------d~~~~~---~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 226 TNNLINFLVEFKDRVD---------------------------------DIIEFT---DDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEEEHHHHHHHHH---------------------------------HHHhcc---CceEEEEeCchhccccCCC
Confidence 9999999999887764 765554 5788899999999999998
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-59 Score=466.80 Aligned_cols=338 Identities=20% Similarity=0.249 Sum_probs=288.9
Q ss_pred CchHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhhceEEEEecCCCCCcCCcCCCcccC
Q 012230 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (468)
Q Consensus 84 ~~l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~l 163 (468)
..+..|...+.+++.+.. ....|+.+.+| |.+..++|++- ... +.+.++|.|+||++|+||+||.|||.+||+.+
T Consensus 52 ~e~~~F~~Lf~RyL~~~~-~~~~wdkI~~p-~~d~vv~y~~i--~~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS~i 126 (498)
T KOG2638|consen 52 TELSGFFNLFSRYLREKA-PTIDWDKIRPP-PEDAVVPYDDI--KNV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVI 126 (498)
T ss_pred hhHHHHHHHHHHHHhccC-CccchhhccCC-Chhhccccccc--cch-hhHHHhhhheEEEEecCCcCCccccCCCceeE
Confidence 345678888888887643 56789999864 55667777543 233 67888999999999999999999999999999
Q ss_pred CccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeec
Q 012230 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (468)
Q Consensus 164 P~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~ 243 (468)
++ .+|.|||++.++||..|++.|. +++|+++|+|++|+++|.+++++|.. .+.+|++|.|+.+|+++.
T Consensus 127 eV--R~g~tFLDL~V~QIe~LN~~Y~-------~dVPlvLMNSfnTdedT~kil~ky~~---~kv~i~TF~QS~~PRi~~ 194 (498)
T KOG2638|consen 127 EV--RDGLTFLDLTVRQIENLNKTYN-------VDVPLVLMNSFNTDEDTQKILKKYAG---SKVDIKTFNQSKYPRIDK 194 (498)
T ss_pred EE--cCCCchhHHHHHHHHHHHhhcC-------CCCCEEEecccccchHHHHHHHHhcC---CceeEEEeccccCCcccc
Confidence 87 4899999999999999999986 78999999999999999999999876 467899999999999987
Q ss_pred CCCceecc-CCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeee
Q 012230 244 NDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAV 322 (468)
Q Consensus 244 ~~gki~l~-~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv 322 (468)
++.-++.. ..+...-+|+|+|||++|.+|+.||+||+|+++|+||+||.++|| |++++|..++.+++.+++++.|+|+
T Consensus 195 etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDN-LGAtvDL~ILn~~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 195 ETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDN-LGATVDLNILNHVINNNIEYLMEVT 273 (498)
T ss_pred ccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEecccc-ccceeeHHHHHHHhcCCCceEEEec
Confidence 77777764 344457899999999999999999999999999999999999999 7889999999999999999999999
Q ss_pred eCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccc
Q 012230 323 PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIK 402 (468)
Q Consensus 323 ~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp 402 (468)
+|+.++.+|++.. +-+|+.+. +||.+.|++-.. ++.....|++| ||||+|++|++++++++.....|+
T Consensus 274 dKT~aDvKgGtLi--~y~G~lrl--LEiaQVP~ehv~------eFkS~kkFkif--NTNNlWinLkavKrlve~~~l~me 341 (498)
T KOG2638|consen 274 DKTRADVKGGTLI--QYEGKLRL--LEIAQVPKEHVD------EFKSIKKFKIF--NTNNLWINLKAVKKLVEENALNME 341 (498)
T ss_pred ccchhhcccceEE--eecCEEEE--EEeccCChhHhh------hhccceeEEEe--ccCCeEEehHHHHHHhhcCcccce
Confidence 9999888888653 23899888 898777665321 22223457776 999999999999999999889999
Q ss_pred cccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCC
Q 012230 403 EFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 403 ~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
.|+|||..+.. .+++|||+.++++++.|+ +...+.||| .||.|||++.+
T Consensus 342 Ii~N~kti~~~----~~viQleTa~GaaIk~F~---na~gv~VpR-sRFlPVKt~sD 390 (498)
T KOG2638|consen 342 IIVNPKTIDRG----IEVIQLETAAGAAIKFFD---NAIGVNVPR-SRFLPVKTCSD 390 (498)
T ss_pred eecChhhccCC----ceEEEEhhhhhHHHHhCC---Cceeeeccc-ccccccccccc
Confidence 99999988742 478999999999999995 344577999 99999999976
No 13
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.81 E-value=1.5e-07 Score=97.71 Aligned_cols=194 Identities=16% Similarity=0.134 Sum_probs=117.9
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
++-+|+||||.||||+. +.||.++|+. |+ +++++.++.+.+. .+--+++..++..+.+.+
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv~---gk~pli~~~l~~l~~~-------------Gi~~i~iv~~~~~~~i~~ 66 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFG---GKYRIIDFTLSNCANS-------------GIDTVGVLTQYQPLELNN 66 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeeeC---CceeehhHHHHHHHhC-------------CCCEEEEEecCCHHHHHH
Confidence 57899999999999986 8999999996 89 8999999999762 344445555778999999
Q ss_pred HHHhCCCCCCCCCc--EEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEe
Q 012230 216 LLESNSYFGMKPTQ--VKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (468)
Q Consensus 216 ~~~~~~~FGl~~~~--v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~ 293 (468)
+|++...||+...+ +.+ .| |.. .. .-...|.|+|+.+..... .+....-+++.|.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~i-~~---~~~-----------~~--~~~~~~~Gta~al~~a~~-----~l~~~~~~~~lV~~ 124 (380)
T PRK05293 67 HIGIGSPWDLDRINGGVTI-LP---PYS-----------ES--EGGKWYKGTAHAIYQNID-----YIDQYDPEYVLILS 124 (380)
T ss_pred HHhCCCcccccCCCCCEEE-eC---Ccc-----------cC--CCCcccCCcHHHHHHHHH-----HHHhCCCCEEEEec
Confidence 99877667765321 111 00 000 00 001135788876655432 33322236788887
Q ss_pred cCCCccccccH-HHHHHHHhcCCcceEeeeeC--CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCC
Q 012230 294 DTNGLLFKAIP-ASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (468)
Q Consensus 294 vDN~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r--~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (468)
-|++. ..|. .++-+|...++++++-+... ....++|.+.. ..+|+ | .++.|.|.. +.
T Consensus 125 gD~l~--~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~g~--V--~~~~eKp~~------~~------ 184 (380)
T PRK05293 125 GDHIY--KMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNT--DENMR--I--VEFEEKPKN------PK------ 184 (380)
T ss_pred CCEEE--cCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEE--CCCCc--E--EEEEeCCCC------CC------
Confidence 77732 2342 56677777788865544332 23456776643 22443 2 444443211 10
Q ss_pred CCCCCCccceeeEEEehhhhHHHHh
Q 012230 371 TGYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 371 ~g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
+. ..|+..+.|+-+.+.+.++
T Consensus 185 ---~~-~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 185 ---SN-LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ---cc-eeeeEEEEEcHHHHHHHHH
Confidence 11 2488888898776655543
No 14
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.75 E-value=3e-07 Score=96.75 Aligned_cols=203 Identities=13% Similarity=0.155 Sum_probs=122.4
Q ss_pred hhceEEEEecCCCCCcCC---cCCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHH
Q 012230 138 AKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 213 (468)
Q Consensus 138 l~kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t 213 (468)
..++.+|+||||.||||+ .+.||.++|+. |+ +++++.++.+... .|--+++...+..+.+
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~---gk~plI~~~L~~l~~~-------------Gi~~i~iv~~~~~~~i 66 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFG---GSYRLIDFVLSNLVNS-------------GYLRIYVLTQYKSHSL 66 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeC---CcceEhHHHHHHHHHC-------------CCCEEEEEeccCHHHH
Confidence 457899999999999998 68999999996 88 9999999998762 4666677778899999
Q ss_pred HHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEe
Q 012230 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (468)
Q Consensus 214 ~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~ 293 (468)
.++|.+. +++....+.++.. .|. ... .-...|.|+||.+..... .+....-+++.|.+
T Consensus 67 ~~~~~~~--~~~~~~~~~~~~~--~~~------------~~~-~~~~~~lGta~al~~a~~-----~i~~~~~~~~lv~~ 124 (407)
T PRK00844 67 DRHISQT--WRLSGLLGNYITP--VPA------------QQR-LGKRWYLGSADAIYQSLN-----LIEDEDPDYVVVFG 124 (407)
T ss_pred HHHHHhC--cCccccCCCeEEE--CCc------------ccC-CCCCcccCCHHHHHHHHH-----HHHhcCCCEEEEec
Confidence 9999742 3332111111100 000 000 012246899887765432 34333346778887
Q ss_pred cCCCccccccH-HHHHHHHhcCCcceEeeee--CCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCC
Q 012230 294 DTNGLLFKAIP-ASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (468)
Q Consensus 294 vDN~l~~~~Dp-~~lG~~~~~~~~~~~kvv~--r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (468)
-|++. ..|. .++-+|..+++++++-+.. .......|++.. ..+|+. .++.|-|...... ...
T Consensus 125 gD~v~--~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~--d~~g~v----~~~~eKp~~~~~~------~~~- 189 (407)
T PRK00844 125 ADHVY--RMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEV--DPDGRI----RGFLEKPADPPGL------PDD- 189 (407)
T ss_pred CCEEE--cCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEE--CCCCCE----EEEEECCCCcccc------cCC-
Confidence 77632 2343 5677888888887665543 234456777643 234542 3444433211100 000
Q ss_pred CCCCCCccceeeEEEehhhhHHHHh
Q 012230 371 TGYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 371 ~g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
.+.. ..|+..+.|+-+.+.+.++
T Consensus 190 ~~~~--~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 190 PDEA--LASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCCc--EEEeEEEEEeHHHHHHHHH
Confidence 0011 2488889999877655554
No 15
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=98.73 E-value=3.3e-07 Score=92.59 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=114.7
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~ 215 (468)
.+-+|+||||.||||.. ..||.++|+. +|+++++.++.+... .|. ++|++..+..+.+.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~---gkPmI~~~l~~l~~a-------------Gi~~I~ii~~~~~~~~~~~ 66 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIY---DKPMIYYPLSTLMLA-------------GIRDILIISTPQDTPRFQQ 66 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEecCCchHHHHH
Confidence 46789999999999985 8899999996 999999999998762 344 444666666778899
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
+|.+...||++ +.+ + ....|.|.|+.+..... +.. +-+++. ..-|
T Consensus 67 ~l~~g~~~g~~---i~y----------------~--------~q~~~~Gta~Al~~a~~------~i~-~~~~~l-v~gD 111 (292)
T PRK15480 67 LLGDGSQWGLN---LQY----------------K--------VQPSPDGLAQAFIIGEE------FIG-GDDCAL-VLGD 111 (292)
T ss_pred HHcCccccCce---eEE----------------E--------ECCCCCCHHHHHHHHHH------HhC-CCCEEE-EECC
Confidence 99876667764 111 1 12247899998876533 332 224444 4577
Q ss_pred CCcccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCC
Q 012230 296 NGLLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (468)
Q Consensus 296 N~l~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~ 374 (468)
|++. ..| ..++-.|..++.++++-+++....++.|++.. ..+|+. ++..|-|. .|. +
T Consensus 112 ~i~~-~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~--d~~g~v----~~i~EKP~------~p~---------s 169 (292)
T PRK15480 112 NIFY-GHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF--DQNGTA----ISLEEKPL------QPK---------S 169 (292)
T ss_pred eeee-ccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEE--CCCCcE----EEEEECCC------CCC---------C
Confidence 7653 334 36777777777777766666555578898654 234543 33333321 110 1
Q ss_pred CCccceeeEEEehh
Q 012230 375 PFPGNINQLILELG 388 (468)
Q Consensus 375 ~f~gNinn~~~~l~ 388 (468)
. ..|+..++|+-+
T Consensus 170 ~-~a~~GiY~~~~~ 182 (292)
T PRK15480 170 N-YAVTGLYFYDND 182 (292)
T ss_pred C-EEEEEEEEEChH
Confidence 1 248889999865
No 16
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.69 E-value=3.7e-07 Score=94.58 Aligned_cols=156 Identities=10% Similarity=0.058 Sum_probs=99.6
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchH-HHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS-RTQ 214 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~-~t~ 214 (468)
++.+|+||||.||||+. +.||.++|+. |+ ++++++++.+.+. .+--+++...+.++ .+.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~---gk~PlIe~~l~~L~~~-------------Gi~~I~iv~~~~~~~~I~ 65 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG---GRYRLIDFPLSNMVNA-------------GIRNVFIFFKNKERQSLF 65 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC---CeeeEEEEEhhhhhcc-------------CCCEEEEEeCCCcHHHHH
Confidence 57789999999999974 8999999996 99 8999999999863 46666666667665 999
Q ss_pred HHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEec
Q 012230 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (468)
Q Consensus 215 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~v 294 (468)
+||.+...||++..+ .+.+... .....|.|.|+.+..... .+.+...+-+++.|.+-
T Consensus 66 ~~l~~~~~~~~~~~~---------------~~~~~~~-----~~e~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnG 122 (369)
T TIGR02092 66 DHLGSGREWDLHRKR---------------DGLFVFP-----YNDRDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNS 122 (369)
T ss_pred HHHhCCCCCCccccc---------------CcEEEEe-----ccCCCCcccChHHHHHHH---HHHHHhCCCCEEEEECC
Confidence 999876677765311 1111110 001234566665422211 22232222367888877
Q ss_pred CCCccccccH-HHHHHHHhcCCcceEeeeeCC--CCcccccEEEE
Q 012230 295 TNGLLFKAIP-ASLGVSATKQYHVNSLAVPRK--AKEAIGGITRL 336 (468)
Q Consensus 295 DN~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r~--~~e~~G~i~~~ 336 (468)
|++ . ..|. .++-+|.++++++++-+.+.. .....|+++..
T Consensus 123 D~l-~-~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~ 165 (369)
T TIGR02092 123 HMV-C-NIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165 (369)
T ss_pred CEE-E-ecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEE
Confidence 762 2 2453 567788888888766655432 23456666544
No 17
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=98.68 E-value=4.5e-07 Score=91.30 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=97.3
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHH
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~ 218 (468)
+|+||||.||||.. ..||.++|+. +|+++++.++.+... .|. ++|.+..+..+.+.++|.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~---gkPmI~~~L~~l~~a-------------Gi~~I~iv~~~~~~~~~~~~lg 65 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSTLMLA-------------GIRDILIISTPQDTPRFQQLLG 65 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC---CEEhHHHHHHHHHHC-------------CCCEEEEEecCCcHHHHHHHhc
Confidence 58999999999975 7999999996 999999999998752 354 445676777788899998
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
....||++ +.+. ....|.|.|+.+..... +... =.++ +..-||++
T Consensus 66 ~g~~~g~~---i~~~------------------------~q~~~~Gta~al~~a~~------~l~~-~~~~-li~gD~i~ 110 (286)
T TIGR01207 66 DGSQWGVN---LSYA------------------------VQPSPDGLAQAFIIGED------FIGG-DPSA-LVLGDNIF 110 (286)
T ss_pred cccccCce---EEEE------------------------EccCCCCHHHHHHHHHH------HhCC-CCEE-EEECCEec
Confidence 76667764 2111 11257899888776533 2222 1344 45678865
Q ss_pred ccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEE
Q 012230 299 LFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITR 335 (468)
Q Consensus 299 ~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~ 335 (468)
. ..| ..++-.+...+.++++-+.+....+++|++..
T Consensus 111 ~-~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~ 147 (286)
T TIGR01207 111 Y-GHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEF 147 (286)
T ss_pred c-ccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEE
Confidence 3 334 35666777777787766666555578887753
No 18
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.66 E-value=8.1e-07 Score=85.94 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=109.6
Q ss_pred EEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
-+|+||||.||||+. +.||.++|+. |++++++.++.+... .+.-++....+.++.+.+++.
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~~-------------g~~~v~iv~~~~~~~~~~~l~ 65 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEFC---NKPMIEHQIEALAKA-------------GVKEIILAVNYRPEDMVPFLK 65 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEEeeeCHHHHHHHHh
Confidence 368999999999974 7899999996 999999999998763 344445555567788999987
Q ss_pred hCC-CCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCC
Q 012230 219 SNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (468)
Q Consensus 219 ~~~-~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 297 (468)
+.. .+|+. ++. .....|.|.|+.+..... .+....-. +.|..-|++
T Consensus 66 ~~~~~~~~~---------------------i~~------~~~~~~~G~~~al~~a~~-----~~~~~~~~-~lv~~~D~~ 112 (233)
T cd06425 66 EYEKKLGIK---------------------ITF------SIETEPLGTAGPLALARD-----LLGDDDEP-FFVLNSDVI 112 (233)
T ss_pred cccccCCeE---------------------EEe------ccCCCCCccHHHHHHHHH-----HhccCCCC-EEEEeCCEe
Confidence 531 12221 111 012246788776655432 23221113 455555653
Q ss_pred cccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCC
Q 012230 298 LLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (468)
Q Consensus 298 l~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f 376 (468)
.. .| ..++-++..+++++++.+.+..+..+.|.+..- ..+|+ | +++.|-|.. + . +.
T Consensus 113 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d-~~~~~--v--~~~~ekp~~------~---~------~~- 169 (233)
T cd06425 113 CD--FPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHD-ENTGR--I--ERFVEKPKV------F---V------GN- 169 (233)
T ss_pred eC--CCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEc-CCCCE--E--EEEEECCCC------C---C------CC-
Confidence 21 23 467888888999988888776555677876431 11343 3 566443221 1 0 11
Q ss_pred ccceeeEEEehhhh
Q 012230 377 PGNINQLILELGPY 390 (468)
Q Consensus 377 ~gNinn~~~~l~~l 390 (468)
..|+..++|+-+.+
T Consensus 170 ~~~~Giyi~~~~~l 183 (233)
T cd06425 170 KINAGIYILNPSVL 183 (233)
T ss_pred EEEEEEEEECHHHH
Confidence 24899999997754
No 19
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.4e-07 Score=94.20 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=99.8
Q ss_pred eEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
+-+|+||||.||||.. +.||.++|+. ++++++++++.+.+ ..+--++++..+..+.+.++|
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~---gkPii~~~l~~L~~-------------~Gv~eivi~~~y~~~~i~~~~ 65 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIA---GKPLIEYVLEALAA-------------AGVEEIVLVVGYLGEQIEEYF 65 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeC---CccHHHHHHHHHHH-------------CCCcEEEEEeccchHHHHHHH
Confidence 4579999999999974 8999999997 99999999999976 258888999999999999999
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 297 (468)
.+...+|++ +.. ..+..|.|+||.++.... .+. + +-+++. |.
T Consensus 66 ~d~~~~~~~---------------------I~y------~~e~~~lGTag~l~~a~~-----~l~--~-~~f~v~---~G 107 (358)
T COG1208 66 GDGEGLGVR---------------------ITY------VVEKEPLGTAGALKNALD-----LLG--G-DDFLVL---NG 107 (358)
T ss_pred hcccccCCc---------------------eEE------EecCCcCccHHHHHHHHH-----hcC--C-CcEEEE---EC
Confidence 986555543 111 223348999999887643 222 1 456666 44
Q ss_pred cccc-ccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEE
Q 012230 298 LLFK-AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITR 335 (468)
Q Consensus 298 l~~~-~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~ 335 (468)
++.. .|. .++.++..+++..++..+........|++..
T Consensus 108 Dv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~ 147 (358)
T COG1208 108 DVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVET 147 (358)
T ss_pred CeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEe
Confidence 4433 443 5778888775555554444322256786553
No 20
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.64 E-value=2.6e-07 Score=89.65 Aligned_cols=182 Identities=20% Similarity=0.168 Sum_probs=116.6
Q ss_pred EEEecCCCCCcCC---cCCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCE-EEEcCccchHHHHHHH
Q 012230 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPF-AIMTSDDTHSRTQELL 217 (468)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~-~IMtS~~t~~~t~~~~ 217 (468)
.|+||||.||||+ .+.||.++|+. |+ +++++.++++... .+-- ++.+..+..+.+.+++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i~---g~~pli~~~l~~l~~~-------------g~~~ii~V~~~~~~~~i~~~~ 65 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPIG---GKYPLIDYVLENLANA-------------GIKEIIVVVNGYKEEQIEEHL 65 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEET---TEEEHHHHHHHHHHHT-------------TCSEEEEEEETTTHHHHHHHH
T ss_pred EEEECCCCCccCchhhhccccccceec---CCCcchhhhhhhhccc-------------CCceEEEEEeecccccccccc
Confidence 4788999999997 47899999996 88 9999999999873 2443 6777778888999999
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCC-ceEEEEEecCC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG-LKWVLFFQDTN 296 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G-~~yi~v~~vDN 296 (468)
++...++++ |. ++. ...|.|+|+....+.. .+.... -+++.|.+.|+
T Consensus 66 ~~~~~~~~~---i~----------------~i~--------~~~~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~ 113 (248)
T PF00483_consen 66 GSGYKFGVK---IE----------------YIV--------QPEPLGTAGALLQALD-----FIEEEDDDEDFLVLNGDI 113 (248)
T ss_dssp TTSGGGTEE---EE----------------EEE--------ESSSSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEE
T ss_pred ccccccccc---ce----------------eee--------cccccchhHHHHHHHH-----HhhhccccceEEEEeccc
Confidence 986545521 11 111 2234488888877643 333222 24688887777
Q ss_pred Ccccccc-HHHHHHHHhcCCcc--eEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCC
Q 012230 297 GLLFKAI-PASLGVSATKQYHV--NSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (468)
Q Consensus 297 ~l~~~~D-p~~lG~~~~~~~~~--~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~ 373 (468)
+.. . | ..++-.|..++.++ .+..++.....+.|.+..- .+|+ | ++.-|-|..-.. .
T Consensus 114 i~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d--~~~~--V--~~~~EKP~~~~~-------------~ 172 (248)
T PF00483_consen 114 IFD-D-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVD--EDGR--V--IRIVEKPDNPNA-------------S 172 (248)
T ss_dssp EES-T-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEE--TTSE--E--EEEEESCSSHSH-------------S
T ss_pred ccc-c-hhhhHHHhhhccccccccccccccccccccceeeeec--ccee--E--EEEeccCccccc-------------c
Confidence 432 2 5 37888888888844 4455555566777876542 3453 2 343333221000 1
Q ss_pred CCCccceeeEEEehhhhHHHHh
Q 012230 374 SPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 374 ~~f~gNinn~~~~l~~l~~~l~ 395 (468)
. ..|+...+|+-+.+...++
T Consensus 173 ~--~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 173 N--LINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp S--EEEEEEEEEETHHHHHHHH
T ss_pred e--eccCceEEEcchHHHHHhh
Confidence 1 2488899999876665543
No 21
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=98.63 E-value=9e-07 Score=89.62 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=54.3
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
.+-+|+||||.||||. ...||.++|+. |++++++.++.+... .|.-++....+..+.+.+|
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~---gkPiI~~vl~~l~~~-------------Gi~~ivivv~~~~~~i~~~ 66 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA-------------GIKEIVLVTHASKNAVENH 66 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEecCChHHHHHH
Confidence 4678999999999998 37899999997 999999999999862 3666677777899999999
Q ss_pred HHh
Q 012230 217 LES 219 (468)
Q Consensus 217 ~~~ 219 (468)
|..
T Consensus 67 ~~~ 69 (297)
T TIGR01105 67 FDT 69 (297)
T ss_pred Hhc
Confidence 964
No 22
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.62 E-value=1e-06 Score=93.34 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=121.8
Q ss_pred hceEEEEecCCCCCcCCc---CCCcccCCccCCCCcc-hHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHH
Q 012230 139 KNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTC-FLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (468)
Q Consensus 139 ~kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks-~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~ 214 (468)
.++.+|+||||.||||.. +.||.++|+. |++ ++++.++.+.+. .+.-+++...+..+.+.
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~---gkp~lI~~~l~~l~~~-------------Gi~~i~vv~~~~~~~i~ 77 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFG---GKFRIIDFALSNCINS-------------GIRRIGVLTQYKAHSLI 77 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEEC---CEEEEhHHHHHHHHHC-------------CCCeEEEEecCCHHHHH
Confidence 479999999999999986 7999999996 896 999999998762 35545555567899999
Q ss_pred HHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEec
Q 012230 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (468)
Q Consensus 215 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~v 294 (468)
++|.+. +++.+.++. ..+ .++.+.........|.|+|+.+..... .+....-+++.|.+-
T Consensus 78 ~~~~~~--~~~~~~~~~----~~i---------~i~~~~~~~~~e~~~lGTa~al~~a~~-----~l~~~~~d~~lVl~g 137 (425)
T PRK00725 78 RHIQRG--WSFFREELG----EFV---------DLLPAQQRVDEENWYRGTADAVYQNLD-----IIRRYDPKYVVILAG 137 (425)
T ss_pred HHHHhh--hcccccCCC----CeE---------EEeCCcccCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecC
Confidence 999753 332211100 000 001001111123457899887766532 343332367888877
Q ss_pred CCCccccccH-HHHHHHHhcCCcceEeeeeC--CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCC
Q 012230 295 TNGLLFKAIP-ASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (468)
Q Consensus 295 DN~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r--~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~ 371 (468)
|++. ..|. .++-+|..+++++++.+... .....+|.+.. ..+|+. .++.|-|..... +....
T Consensus 138 D~l~--~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~~~V----~~~~EKp~~~~~-------~~~~~ 202 (425)
T PRK00725 138 DHIY--KMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAV--DENDRI----TAFVEKPANPPA-------MPGDP 202 (425)
T ss_pred CeEe--ccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEE--CCCCCE----EEEEECCCCccc-------cccCc
Confidence 7732 2343 56778888888887766442 34456777653 223442 444443321100 00000
Q ss_pred CCCCCccceeeEEEehhhhHHHHh
Q 012230 372 GYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 372 g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
.. +..|+..+.|+-+.+.+.|.
T Consensus 203 ~~--~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 203 DK--SLASMGIYVFNADYLYELLE 224 (425)
T ss_pred cc--eEEEeeEEEEeHHHHHHHHH
Confidence 01 13588899999887665554
No 23
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=98.60 E-value=1e-06 Score=85.64 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=108.3
Q ss_pred EEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHH
Q 012230 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~ 217 (468)
-+|+||||.||||+. ..||.++|+. +++++++.++.+... .+ .++|.++....+.+.+++
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~~-------------gi~~i~vv~~~~~~~~~~~~l 65 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLMLA-------------GIREILIISTPEDLPLFKELL 65 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHHHHHHHC-------------CCCEEEEEeCcchHHHHHHHH
Confidence 479999999999975 7899999996 999999999988752 34 345556666668889999
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 297 (468)
.....+|+. |.+ . ....|.|.|+.+..... .+ . + +.++|.+-|++
T Consensus 66 ~~~~~~~~~---i~~----------------~--------~~~~~~G~~~al~~a~~-----~~-~-~-~~~lv~~gD~~ 110 (240)
T cd02538 66 GDGSDLGIR---ITY----------------A--------VQPKPGGLAQAFIIGEE-----FI-G-D-DPVCLILGDNI 110 (240)
T ss_pred hcccccCce---EEE----------------e--------eCCCCCCHHHHHHHHHH-----hc-C-C-CCEEEEECCEE
Confidence 865555532 110 0 01245788776654322 22 1 1 33455566765
Q ss_pred ccccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCC
Q 012230 298 LLFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (468)
Q Consensus 298 l~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f 376 (468)
... .|. .++-++..++.++++-+.+....+..|.+.. ..+|+. +++.|-|.. + .+.
T Consensus 111 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~g~v----~~~~ekp~~------~---------~~~- 167 (240)
T cd02538 111 FYG-QGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEF--DENGRV----LSIEEKPKK------P---------KSN- 167 (240)
T ss_pred Ecc-HHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEe--cCCCcE----EEEEECCCC------C---------CCC-
Confidence 432 232 4566666777887776665444456786543 235542 343332110 1 011
Q ss_pred ccceeeEEEehhhhHHHHh
Q 012230 377 PGNINQLILELGPYMEELK 395 (468)
Q Consensus 377 ~gNinn~~~~l~~l~~~l~ 395 (468)
..|+..++|+-+.+ +.++
T Consensus 168 ~~~~Giyi~~~~~l-~~l~ 185 (240)
T cd02538 168 YAVTGLYFYDNDVF-EIAK 185 (240)
T ss_pred eEEEEEEEECHHHH-HHHH
Confidence 24888899997643 4453
No 24
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.58 E-value=9.9e-07 Score=93.82 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=88.2
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
.+.+|+||||.||||+.+.||.++|+. |+|++++.++.+.+. .+.-+++...+..+.+.+++..
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------~~~~iivv~~~~~~~i~~~~~~ 68 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLL---GEPMLRFVYRALRPL-------------FGDNVWTVVGHRADMVRAAFPD 68 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccC---CCcHHHHHHHHHHhc-------------CCCcEEEEECCCHHHHHHhccc
Confidence 578999999999999988999999996 999999999988642 2333433444556666666542
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
. ++. ++. . ..|.|.|+..... ++.|.+.+.+++.+...|.++.
T Consensus 69 ~--------~~~----------------~v~--~------~~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~i 111 (456)
T PRK14356 69 E--------DAR----------------FVL--Q------EQQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPLV 111 (456)
T ss_pred c--------Cce----------------EEE--c------CCCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCcccC
Confidence 1 111 222 1 1256666544332 2345444567889998888654
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCc
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~ 342 (468)
..-+. .++..+. +.++++.+.+......+|.+.. .+|+
T Consensus 112 ~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~---~~g~ 150 (456)
T PRK14356 112 TTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR---RNGH 150 (456)
T ss_pred CHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE---cCCe
Confidence 33222 3333332 5566555555434456786643 3564
No 25
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.58 E-value=1.2e-06 Score=84.09 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=87.6
Q ss_pred EEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHH
Q 012230 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELL 217 (468)
Q Consensus 142 avv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~ 217 (468)
-+|+||||.||||+ ...||.++|+. |++++++.++.+.+. .|. ++|.|. +..+.+.++|
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi~---g~piI~~~l~~l~~~-------------Gi~~I~iv~~-~~~~~i~~~l 64 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPLA---NVPLIDYTLEFLALN-------------GVEEVFVFCC-SHSDQIKEYI 64 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEEC---CEehHHHHHHHHHHC-------------CCCeEEEEeC-CCHHHHHHHH
Confidence 36999999999998 38999999997 999999999998762 344 345554 6789999999
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 297 (468)
++..++++... ...+. ++. ...+.|.|+.+..+...+.+ .+.+.+.+-|++
T Consensus 65 ~~~~~~~~~~~------~~~i~--------~~~--------~~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i 115 (217)
T cd04197 65 EKSKWSKPKSS------LMIVI--------IIM--------SEDCRSLGDALRDLDAKGLI-------RGDFILVSGDVV 115 (217)
T ss_pred hhccccccccC------cceEE--------EEe--------CCCcCccchHHHHHhhcccc-------CCCEEEEeCCee
Confidence 98665554310 00011 111 11356778877765443322 134556777764
Q ss_pred ccccccH-HHHHHHHh-----cCCcceEeeeeC
Q 012230 298 LLFKAIP-ASLGVSAT-----KQYHVNSLAVPR 324 (468)
Q Consensus 298 l~~~~Dp-~~lG~~~~-----~~~~~~~kvv~r 324 (468)
. ..|. .++-+|.+ .++++++-+.+.
T Consensus 116 ~--~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~ 146 (217)
T cd04197 116 S--NIDLKEILEEHKERRKKDKNAIMTMVLKEA 146 (217)
T ss_pred e--ccCHHHHHHHHHHhhccccCceEEEEEEeC
Confidence 3 3454 56778876 377776654443
No 26
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.55 E-value=2e-06 Score=91.25 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=97.4
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
++.+|+||||.||||.. +.||.++|+. |+ +++++.++++... .+.-+++...+..+.+.+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~---gk~plI~~~L~~l~~~-------------Gi~~vivv~~~~~~~i~~ 66 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLA---GKYRLIDIPISNCINS-------------GINKIYVLTQFNSASLNR 66 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEEC---CeeEEeHHHHHHHHHC-------------CCCEEEEEecCCHHHHHH
Confidence 67899999999999974 8999999996 88 9999999988762 355556666678899999
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
+|.+...++...... + .+........-...+.|+||.+..... .+....-+++.|.+-|
T Consensus 67 ~l~~~~~~~~~~~g~-------~---------~i~~~~~~~~~~~~~lGTa~al~~a~~-----~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 67 HISQTYNFDGFSGGF-------V---------EVLAAQQTPENPSWFQGTADAVRKYLW-----HFQEWDVDEYLILSGD 125 (429)
T ss_pred HHhcCcCccccCCCE-------E---------EEeCCcccCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecCC
Confidence 998643222100000 0 011000000001123799887766532 3333323577888777
Q ss_pred CCccccccH-HHHHHHHhcCCcceEeeeeCC--CCcccccEE
Q 012230 296 NGLLFKAIP-ASLGVSATKQYHVNSLAVPRK--AKEAIGGIT 334 (468)
Q Consensus 296 N~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r~--~~e~~G~i~ 334 (468)
++ . ..|. .++-+|.+.++++++-+.+.. .....|.+.
T Consensus 126 ~l-~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~ 165 (429)
T PRK02862 126 QL-Y-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMK 165 (429)
T ss_pred EE-E-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEE
Confidence 63 2 2453 667788888888776654432 234567664
No 27
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.53 E-value=1.6e-06 Score=86.58 Aligned_cols=196 Identities=18% Similarity=0.147 Sum_probs=116.6
Q ss_pred EEEEecCCCCCcCC----cCCCcccCCccCCCC-cchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 142 AFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 142 avv~LaGG~GTRLG----~~~pK~~lP~~~~~g-ks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
-+|+||||.||||. ...||.++|+. | +|++|+.++++..+. ..-.++|.|+...++.+.++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~---g~~~li~~~l~~l~~~~-----------~~~~i~vvt~~~~~~~v~~~ 67 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLF---GDKSLLQQTLDRLKGLV-----------PPDRILVVTNEEYRFLVREQ 67 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcC---CCCcHHHHHHHHHhcCC-----------CCCcEEEEechHHHHHHHHH
Confidence 47999999999995 46899999985 6 999999999987531 01267888887666778888
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHH-CCceEEEEEecC
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDT 295 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~-~G~~yi~v~~vD 295 (468)
+++ .+ . ...++. +..+.|+|+....... .+.+ .+-+++.|...|
T Consensus 68 l~~---~~-~------------------~~~ii~--------ep~~~gTa~ai~~a~~-----~~~~~~~~~~vlVl~~D 112 (274)
T cd02509 68 LPE---GL-P------------------EENIIL--------EPEGRNTAPAIALAAL-----YLAKRDPDAVLLVLPSD 112 (274)
T ss_pred Hhh---cC-C------------------CceEEE--------CCCCCCcHHHHHHHHH-----HHHhcCCCCeEEEecch
Confidence 865 11 1 112333 1235677776654422 2222 234688888777
Q ss_pred CCccccccH-HHHHHH---HhcCCcceEeeeeCCCCcccccEEEEecCCC-ceeEEEEecCCcchhHhhcCCCCCCCCCC
Q 012230 296 NGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADG-RSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (468)
Q Consensus 296 N~l~~~~Dp-~~lG~~---~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g-~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (468)
.+.....|- ..+-.+ .+.+..+++-+.+..|...+|.+..-...+| -..| ..+.|-|..-..+. .+.
T Consensus 113 ~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~~~-- 184 (274)
T cd02509 113 HLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRV--KRFVEKPDLETAKE----YLE-- 184 (274)
T ss_pred hcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEE--eEEEECcChHHHHH----Hhh--
Confidence 754311111 122212 2356777777777778788888764211112 1133 45555544322111 010
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhh
Q 012230 371 TGYSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 371 ~g~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
.|-.++ |+..+.|+.+.+.+.+++
T Consensus 185 ~g~~~w--NsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 185 SGNYLW--NSGIFLFRAKTFLEELKK 208 (274)
T ss_pred cCCeEE--ECceeeeeHHHHHHHHHH
Confidence 111133 999999999888877765
No 28
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=98.52 E-value=4e-06 Score=79.51 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=105.0
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. ..||.++|+. |+|++++.++.+.+. .+.-++++.++..+.+.+++..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~v~vv~~~~~~~i~~~~~~ 64 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVA---GRPFLEYLLEYLARQ-------------GISRIVLSVGYLAEQIEEYFGD 64 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEEC---CcchHHHHHHHHHHC-------------CCCEEEEEcccCHHHHHHHHcC
Confidence 58999999999974 5899999996 999999999998752 3555566666778888888875
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
...+|.. +.+ . . ...+.|+++.+..... .+ +-+++.+.+.|++..
T Consensus 65 ~~~~~~~---~~~--------~-----------~-----~~~~~G~~~~l~~a~~-----~~---~~~~~lv~~~D~~~~ 109 (223)
T cd06915 65 GYRGGIR---IYY--------V-----------I-----EPEPLGTGGAIKNALP-----KL---PEDQFLVLNGDTYFD 109 (223)
T ss_pred ccccCce---EEE--------E-----------E-----CCCCCcchHHHHHHHh-----hc---CCCCEEEEECCcccC
Confidence 3322321 111 0 0 1235677654433221 22 125678888887542
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCcc
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~g 378 (468)
.|. .++-.+.+.+.++++.+.+.......|.+. + ..+|+. +++.+-+.. . -+. ..
T Consensus 110 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~-~-d~~~~v----~~~~ek~~~---------~------~~~-~~ 165 (223)
T cd06915 110 --VDLLALLAALRASGADATMALRRVPDASRYGNVT-V-DGDGRV----IAFVEKGPG---------A------APG-LI 165 (223)
T ss_pred --CCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEE-E-CCCCeE----EEEEeCCCC---------C------CCC-cE
Confidence 232 445556667788877776644445666543 3 234442 344332110 0 011 23
Q ss_pred ceeeEEEehhhhH
Q 012230 379 NINQLILELGPYM 391 (468)
Q Consensus 379 Ninn~~~~l~~l~ 391 (468)
|+...+|+-+.+.
T Consensus 166 ~~Giy~~~~~~l~ 178 (223)
T cd06915 166 NGGVYLLRKEILA 178 (223)
T ss_pred EEEEEEECHHHHh
Confidence 8889999987554
No 29
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.51 E-value=2.7e-06 Score=81.43 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=90.3
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. +.||.++|+. |++++++.++.+.+. .+.-+++..++..+.+.+++..
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~---g~~li~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVA---GKPLIDHALDRLAAA-------------GIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeEC---CEEHHHHHHHHHHHC-------------CCCEEEEEccCCHHHHHHHHhc
Confidence 58999999999975 7899999996 999999999999862 4666677778899999999986
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
.++|+. |.+. ..+ ..+.|.|+.+..... .+ .. ++++|.+-|++..
T Consensus 66 -~~~~~~---i~~~-------------------~~~----~~~~g~~~~l~~~~~-----~~-~~--~~~lv~~~D~i~~ 110 (221)
T cd06422 66 -SRFGLR---ITIS-------------------DEP----DELLETGGGIKKALP-----LL-GD--EPFLVVNGDILWD 110 (221)
T ss_pred -ccCCce---EEEe-------------------cCC----CcccccHHHHHHHHH-----hc-CC--CCEEEEeCCeeeC
Confidence 445542 1110 111 135577665443322 22 12 6788888887532
Q ss_pred cccc-HHHHHHHH--hcCCcceEeeeeCCCCcccccEE
Q 012230 300 FKAI-PASLGVSA--TKQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 300 ~~~D-p~~lG~~~--~~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
.| -.++-.|. ..++.+++.+++.......|.+.
T Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 146 (221)
T cd06422 111 --GDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFS 146 (221)
T ss_pred --CCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEE
Confidence 23 23454555 45666666555543445667654
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.48 E-value=3.9e-06 Score=82.53 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=111.3
Q ss_pred EEEecCC--CCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 143 FVLVAGG--LGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 143 vv~LaGG--~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
+|+|||| .||||+. ..||.++|+. |++++++.++.+..+ ..+.-+++...+..+.+.+++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~---g~plI~~~l~~l~~~------------~gi~~i~iv~~~~~~~i~~~l 65 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVA---GKPMIHHHIEACAKV------------PDLKEVLLIGFYPESVFSDFI 65 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeEC---CeeHHHHHHHHHHhc------------CCCcEEEEEecCCHHHHHHHH
Confidence 4788999 8999986 7899999996 999999999988753 135555666667889999999
Q ss_pred HhCC-CCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 218 ESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 218 ~~~~-~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
.+.. .+|+. |.+ + ....|.|+|+....... .+....-++++|.+-|+
T Consensus 66 ~~~~~~~~~~---i~~----------------~--------~~~~~~Gt~~al~~a~~-----~l~~~~~~~~lv~~gD~ 113 (257)
T cd06428 66 SDAQQEFNVP---IRY----------------L--------QEYKPLGTAGGLYHFRD-----QILAGNPSAFFVLNADV 113 (257)
T ss_pred HhcccccCce---EEE----------------e--------cCCccCCcHHHHHHHHH-----HhhccCCCCEEEEcCCe
Confidence 7642 22321 111 0 01246788887655432 23222236788887777
Q ss_pred CccccccH-HHHHHHHhcCCcceEeeeeC--CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCC
Q 012230 297 GLLFKAIP-ASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (468)
Q Consensus 297 ~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r--~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~ 373 (468)
+. ..|. .++-+|.++++++++-+.+. ......|++. +...+|+. .++.|-|.. + .
T Consensus 114 ~~--~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~-~d~~~g~v----~~~~Ekp~~------~---------~ 171 (257)
T cd06428 114 CC--DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIV-EDPSTGEV----LHYVEKPET------F---------V 171 (257)
T ss_pred ec--CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEE-EeCCCCeE----EEEEeCCCC------c---------c
Confidence 52 2353 66788888888887665543 2345677654 32134543 343332210 1 1
Q ss_pred CCCccceeeEEEehhhh
Q 012230 374 SPFPGNINQLILELGPY 390 (468)
Q Consensus 374 ~~f~gNinn~~~~l~~l 390 (468)
+. ..|+..++|+-+.+
T Consensus 172 ~~-~~~~Giyi~~~~~~ 187 (257)
T cd06428 172 SD-LINCGVYLFSPEIF 187 (257)
T ss_pred cc-eEEEEEEEECHHHH
Confidence 11 24999999998754
No 31
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.48 E-value=5.8e-06 Score=88.88 Aligned_cols=187 Identities=17% Similarity=0.166 Sum_probs=109.4
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
.+++|+||||.||||+.+.||.++|+. |+|++++.++++.+.. .-.++|.++ +..+.+.++++.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi~---gkpli~~~l~~l~~~g------------~~~iivvv~-~~~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTLA---GRSMLGHVLHAAAGLA------------PQHLVVVVG-HDRERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceeceeC---CccHHHHHHHHHHhcC------------CCcEEEEEC-CCHHHHHHHhhc
Confidence 578899999999999988999999996 9999999999997631 124555555 456678777764
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
.. . .+.+ +. ...|.|.|+...+.. +.+....-++++|...|+++.
T Consensus 68 ~~---~---~~~~----------------~~--------~~~~~Gt~~si~~al-----~~l~~~~~~~vlV~~gD~P~~ 112 (482)
T PRK14352 68 LA---P---EVDI----------------AV--------QDEQPGTGHAVQCAL-----EALPADFDGTVVVTAGDVPLL 112 (482)
T ss_pred cC---C---ccEE----------------Ee--------CCCCCCcHHHHHHHH-----HHhccCCCCeEEEEeCCeecc
Confidence 21 0 1111 11 123566666443322 223222346788888888754
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCcc
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~g 378 (468)
...|. .++-.+...+.++.+.+.+..+...+|.+.. ..+|+.. ..+|..+.+.. ++. .. ..
T Consensus 113 ~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~--~~~g~V~-~~~EKp~~~~~---------~~~----~~--~~ 174 (482)
T PRK14352 113 DGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR--DQDGEVT-AIVEQKDATPS---------QRA----IR--EV 174 (482)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE--CCCCCEE-EEEECCCCCHH---------Hhh----cc--eE
Confidence 33332 4455555666666554444445556786543 3456531 12454332111 000 11 23
Q ss_pred ceeeEEEehhhhHHHHh
Q 012230 379 NINQLILELGPYMEELK 395 (468)
Q Consensus 379 Ninn~~~~l~~l~~~l~ 395 (468)
|+..++|+-+.|.+.++
T Consensus 175 ~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 175 NSGVYAFDAAVLRSALA 191 (482)
T ss_pred EEEEEEEEHHHHHHHHH
Confidence 78888888776655543
No 32
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.45 E-value=3e-06 Score=90.07 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=109.0
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
++.+|+||||.||||. .+.||.++|+. |+ +++++.++.+.+ ..|.-+++...+..+.+.+
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~llpv~---g~~plId~~L~~l~~-------------~Gi~~i~iv~~~~~~~i~~ 66 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPAVPIG---GNYRLIDIPMSNCIN-------------SGINKIYVLTQFNSASLNR 66 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccceEeC---CcceEehHHHHHHHh-------------CCCCEEEEEeccCHHHHHH
Confidence 6889999999999998 48999999996 76 999999999875 2466667777789999999
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
+|++...|+.... +.++.+. +.. +.....-...|.|+||.+..... .+++...++-+++.+.+-|
T Consensus 67 ~l~~~~~~~~~~~----~~~~~~~--------i~~-~~q~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD 131 (436)
T PLN02241 67 HLSRAYNFGNGGN----FGDGFVE--------VLA-ATQTPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGD 131 (436)
T ss_pred HHhccCCCCCCcc----cCCCCEE--------EcC-CcccCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCC
Confidence 9985433443210 0111111 111 00000011258999988765432 1222111124788888777
Q ss_pred CCccccccH-HHHHHHHhcCCcceEeeeeC--CCCcccccEEEEecCCCceeEEEEecCCcc
Q 012230 296 NGLLFKAIP-ASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLD 354 (468)
Q Consensus 296 N~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r--~~~e~~G~i~~~~~~~g~~~v~~VEYsel~ 354 (468)
++ . ..|. .++-+|.++++++++-+.+. ......|++.. ..+|+ + +++.|.|
T Consensus 132 ~v-~-~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~--d~~~~--v--~~~~Ekp 185 (436)
T PLN02241 132 HL-Y-RMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI--DDTGR--I--IEFSEKP 185 (436)
T ss_pred eE-E-ccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE--CCCCC--E--EEEEECC
Confidence 74 2 3453 66778888888876655442 23467787654 23444 2 6776654
No 33
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.45 E-value=1.6e-05 Score=76.13 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=104.1
Q ss_pred EEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHHhCC
Q 012230 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLESNS 221 (468)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~~~~ 221 (468)
+|+||||.||||+...||.++|+. |+|++++.++.+... .+ .++|.++. .++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~---gkpli~~~i~~l~~~-------------~i~~i~iv~~~-~~~~i~~~~~~-- 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVLDAARAL-------------GPDRIVVVVGH-GAEQVKKALAN-- 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeC---CccHHHHHHHHHHhC-------------CCCeEEEEECC-CHHHHHHHhCC--
Confidence 589999999999977899999996 999999999998752 23 34555554 47788887764
Q ss_pred CCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcccc
Q 012230 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (468)
Q Consensus 222 ~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~ 301 (468)
+| +.++ . . ..+.|.++....... .+ ..+.+++.+..-|+++...
T Consensus 62 -~~-----~~~~----------------~--~------~~~~g~~~ai~~a~~-----~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 62 -PN-----VEFV----------------L--Q------EEQLGTGHAVKQALP-----AL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred -CC-----cEEE----------------E--C------CCCCCCHHHHHHHHH-----hh-ccCCCeEEEEeCCccccCH
Confidence 12 1121 1 1 013566665544322 23 2235788999888865432
Q ss_pred ccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccce
Q 012230 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (468)
Q Consensus 302 ~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNi 380 (468)
.|- .++-.+.+.++++++-+++.......|.+.. ..+|+. +++.|-+..-..+ + ... ..|+
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~v----~~~~ek~~~~~~~--~---------~~~-~~~~ 167 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR--DGNGKV----LRIVEEKDATEEE--K---------AIR-EVNA 167 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE--cCCCCE----EEEEECCCCChHH--H---------hhc-eEEe
Confidence 221 3344455556777666555432245665432 234653 3332221100000 0 111 3488
Q ss_pred eeEEEehhhhHHHHh
Q 012230 381 NQLILELGPYMEELK 395 (468)
Q Consensus 381 nn~~~~l~~l~~~l~ 395 (468)
+.++|+-+.+.+.++
T Consensus 168 giy~~~~~~~~~~l~ 182 (229)
T cd02540 168 GIYAFDAEFLFEALP 182 (229)
T ss_pred EEEEEEHHHHHHHHH
Confidence 889999876666664
No 34
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=98.45 E-value=6.7e-06 Score=81.12 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=97.9
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. +.||.++|+. |++++++.++.+.+ ..|.-+++...+..+.+.++|.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~---g~pii~~~l~~l~~-------------~gi~~i~iv~~~~~~~i~~~~~~ 65 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIG---GKPILWHIMKIYSH-------------HGINDFIICCGYKGYVIKEYFAN 65 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEEC---CEEHHHHHHHHHHH-------------CCCCEEEEEcCCCHHHHHHHHHh
Confidence 58899999999975 4899999996 99999998888865 24777777888889999999986
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
...+|. ..++.+ +++.+.... ...++.. -.......|.|+||.+..... .+ . -+++.|.+-|++ .
T Consensus 66 ~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~gt~~al~~~~~-----~i-~--~e~flv~~gD~i-~ 130 (254)
T TIGR02623 66 YFLHMS-DVTFHM-ADNTMEVHH-KRVEPWR---VTLVDTGESTQTGGRLKRVRE-----YL-D--DEAFCFTYGDGV-A 130 (254)
T ss_pred hhhccc-CeeEEe-ccccccccc-ccCCccc---eeeeecCCcCCcHHHHHHHHH-----hc-C--CCeEEEEeCCeE-e
Confidence 433221 112222 222222211 1111100 000112357899987765533 12 1 245667766663 2
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEE
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITR 335 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~ 335 (468)
..|. .++-+|...++++++.++ .+.+..|++..
T Consensus 131 -~~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG~v~~ 164 (254)
T TIGR02623 131 -DIDIKALIAFHRKHGKKATVTAV--QPPGRFGALDL 164 (254)
T ss_pred -cCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEE
Confidence 2454 667778888888876544 24466787653
No 35
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=98.44 E-value=2.8e-06 Score=80.39 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=90.9
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. ..||.++|+. |++++++.++.+... .+.-++....+..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~---g~pli~~~l~~l~~~-------------g~~~i~vv~~~~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIA---GKPILEYIIERLARA-------------GIDEIILVVGYLGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEEC---CeeHHHHHHHHHHHC-------------CCCEEEEEeccCHHHHHHHHcC
Confidence 48999999999973 6899999996 999999999998763 2333344444467788888876
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
...+|+. |.+ +. ...|.|.|+.+..... .+ .-+++.|..-|++..
T Consensus 65 ~~~~~~~---i~~----------------~~--------~~~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~~ 109 (217)
T cd04181 65 GSKFGVN---IEY----------------VV--------QEEPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLTD 109 (217)
T ss_pred hhhcCce---EEE----------------Ee--------CCCCCccHHHHHHhhh-----hc---CCCCEEEEECCeecC
Confidence 5433421 111 11 1135787776655432 22 346788888887432
Q ss_pred cccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEE
Q 012230 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 300 ~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
.| -.++-++..+++++++-+.+.......|.+.
T Consensus 110 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (217)
T cd04181 110 --LDLSELLRFHREKGADATIAVKEVEDPSRYGVVE 143 (217)
T ss_pred --cCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEE
Confidence 23 2456677788888887776655555667654
No 36
>PRK10122 GalU regulator GalF; Provisional
Probab=98.42 E-value=7.3e-06 Score=82.96 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
++.+|+||||.||||+ ...||.++|+. ||+++++.++.+... .|--+++...+..+.+.+|
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~---gkpiI~~~l~~l~~~-------------Gi~~i~iv~~~~~~~i~~~ 66 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA-------------GIKEIVLVTHASKNAVENH 66 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcCCChHHHHHH
Confidence 5788999999999998 47899999997 999999999999863 3555555567799999999
Q ss_pred HHh
Q 012230 217 LES 219 (468)
Q Consensus 217 ~~~ 219 (468)
|..
T Consensus 67 ~~~ 69 (297)
T PRK10122 67 FDT 69 (297)
T ss_pred Hhc
Confidence 963
No 37
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.41 E-value=3.5e-06 Score=79.77 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=89.1
Q ss_pred EEEecCCCCCcCC---cCCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
+|+||||.||||. .+.||.++|+. |+ +++++.++.+... .+--++....+..+.+.++|.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~-------------gi~~iivv~~~~~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFG---GRYRLIDFPLSNMVNS-------------GIRNVGVLTQYKSRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEEC---CeeeeHHHHHHHHHHC-------------CCCEEEEEeCCChHHHHHHHh
Confidence 4899999999996 37899999996 88 9999999998762 244444444466889999998
Q ss_pred hCCCCCCCCC--cEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 219 SNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 219 ~~~~FGl~~~--~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
+...||++.. .+. ++. .........|.|+|+....... .+....-+++.|..-|+
T Consensus 65 ~~~~~~~~~~~~~~~----------------~~~--~~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD~ 121 (200)
T cd02508 65 SGKEWDLDRKNGGLF----------------ILP--PQQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGDH 121 (200)
T ss_pred CCCcccCCCCCCCEE----------------EeC--cccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCCE
Confidence 7666666421 111 111 0000123467899997776543 33333336778887777
Q ss_pred CccccccH-HHHHHHHhcCCcceEee
Q 012230 297 GLLFKAIP-ASLGVSATKQYHVNSLA 321 (468)
Q Consensus 297 ~l~~~~Dp-~~lG~~~~~~~~~~~kv 321 (468)
+ . ..|. .++-++..++.+++.-+
T Consensus 122 v-~-~~~~~~~l~~~~~~~~~~t~~~ 145 (200)
T cd02508 122 I-Y-NMDYREMLDFHIESGADITVVY 145 (200)
T ss_pred E-E-ecCHHHHHHHHHHcCCCEEEEE
Confidence 3 2 2343 56667777777765443
No 38
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.41 E-value=5.1e-06 Score=81.62 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=95.0
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. +.||.++|+. |++++++.++.+.. ..+.-++....+..+.+.+|+++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~---~~p~i~~~~~~~~~-------------~gi~~i~iv~~~~~~~i~~~~~~ 64 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIG---GRPILWHIMKIYSH-------------YGHNDFILCLGYKGHVIKEYFLN 64 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEEC---CEEHHHHHHHHHHh-------------CCCceEEEECCCCHHHHHHHHHh
Confidence 48999999999974 7899999996 99999988887765 24666777777889999999987
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCC--CCCcc----ccccCCChhHhHHHhhcChhHHHHHCCceEEEEEe
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK--NKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~--~~~~i----~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~ 293 (468)
...+|.+ +.+-. .++++...+. .++.+ ...|.|+|+.+..... .+ ..+ +++.+.+
T Consensus 65 ~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~-~~~-~~~lv~~ 125 (253)
T cd02524 65 YFLHNSD---VTIDL---------GTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL-GDD-ETFMLTY 125 (253)
T ss_pred hhhhcCc---eeEee---------cccceeeecccccccceeecccCcccccHHHHHHHHH-----hc-CCC-CeEEEEc
Confidence 5444421 22211 1111111000 01111 1246778776554322 22 111 6888887
Q ss_pred cCCCccccccHHHHHHHHhcCCcceEeeeeCCCCcccccEE
Q 012230 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 294 vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
-|++....+ -.++-+|...++++.+.++. +....|++.
T Consensus 126 gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~--~~~~~g~v~ 163 (253)
T cd02524 126 GDGVSDVNI-NALIEFHRSHGKLATVTAVH--PPGRFGELD 163 (253)
T ss_pred CCEEECCCH-HHHHHHHHHcCCCEEEEEec--CCCcccEEE
Confidence 777543223 35566777788888765543 445667643
No 39
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=9.5e-06 Score=84.35 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=130.5
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
.+.+|+||-|+||||.++.||.+-|+. |||.+++.++....+. .--++..-++-.+.+++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~va---GkpMl~hVi~~a~~l~-------------~~~i~vVvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPVA---GKPMLEHVIDAARALG-------------PDDIVVVVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhcc---CccHHHHHHHHHhhcC-------------cceEEEEEcCCHHHHHHHhcc
Confidence 467999999999999999999999997 9999999999887753 334455567888888888875
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCce-EEEEEecCCCc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQDTNGL 298 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~-yi~v~~vDN~l 298 (468)
.. ++.|+.| ..|.|+|....+... .+ ..+.+ .+.|.+=|=+|
T Consensus 66 ~~-------~v~~v~Q------------------------~eqlGTgHAV~~a~~-----~l-~~~~~g~vLVl~GD~PL 108 (460)
T COG1207 66 RD-------DVEFVLQ------------------------EEQLGTGHAVLQALP-----AL-ADDYDGDVLVLYGDVPL 108 (460)
T ss_pred cc-------CceEEEe------------------------cccCChHHHHHhhhh-----hh-hcCCCCcEEEEeCCccc
Confidence 32 3334333 136888888877643 33 34444 67777666666
Q ss_pred cccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCc
Q 012230 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (468)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~ 377 (468)
...--. .++.++...+..++..+.......-+|.|++- .+|+.. ..||..+-+++-+. -+-+
T Consensus 109 it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~--~~g~V~-~IVE~KDA~~eek~-------------I~ei- 171 (460)
T COG1207 109 ITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRD--GNGEVT-AIVEEKDASEEEKQ-------------IKEI- 171 (460)
T ss_pred CCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEc--CCCcEE-EEEEcCCCCHHHhc-------------CcEE-
Confidence 533112 57888888888988887776555568988863 455533 33998776665321 1222
Q ss_pred cceeeEEEehhhhHHHHhh
Q 012230 378 GNINQLILELGPYMEELKK 396 (468)
Q Consensus 378 gNinn~~~~l~~l~~~l~~ 396 (468)
|+..+.|+-+.|.+.|.+
T Consensus 172 -NtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 172 -NTGIYAFDGAALLRALPK 189 (460)
T ss_pred -eeeEEEEcHHHHHHHHHH
Confidence 999999998888887764
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=98.40 E-value=6.4e-06 Score=79.47 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=88.2
Q ss_pred eEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHH
Q 012230 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~ 216 (468)
+.+|+||||.||||+ .+.||.++|+. |++++++.++.+.+. .+ .++|.|+. ..+.+.++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~---g~~li~~~l~~l~~~-------------~~~~i~vv~~~-~~~~~~~~ 63 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVA---GKPIIQYAIEDLREA-------------GIEDIGIVVGP-TGEEIKEA 63 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEEC---CcchHHHHHHHHHHC-------------CCCEEEEEcCC-CHHHHHHH
Confidence 468999999999997 47899999996 999999999998752 23 34556655 78889999
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
+++...+|++ +.+ +. . ..|.|.|+.+..... .+. +-.++. .+-|.
T Consensus 64 ~~~~~~~~~~---i~~----------------~~--~------~~~~g~~~sl~~a~~-----~i~--~~~~li-~~~D~ 108 (236)
T cd04189 64 LGDGSRFGVR---ITY----------------IL--Q------EEPLGLAHAVLAARD-----FLG--DEPFVV-YLGDN 108 (236)
T ss_pred hcchhhcCCe---EEE----------------EE--C------CCCCChHHHHHHHHH-----hcC--CCCEEE-EECCe
Confidence 9875445432 111 11 1 135677765554322 221 224555 44566
Q ss_pred CccccccHHHHHHHHhcCCcceEeeeeCCCCcccccEE
Q 012230 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 297 ~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
+....+. .++-.+...++++++-+.+.....+.|.+.
T Consensus 109 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (236)
T cd04189 109 LIQEGIS-PLVRDFLEEDADASILLAEVEDPRRFGVAV 145 (236)
T ss_pred ecCcCHH-HHHHHHHhcCCceEEEEEECCCcccceEEE
Confidence 4321122 345566777888877766643345567544
No 41
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.35 E-value=4.9e-06 Score=79.29 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=88.0
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. ..||.++|+. |++++++.++++... .+.-+++...+..+.+.+++.+
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~---g~pli~~~l~~l~~~-------------~~~~iivv~~~~~~~i~~~~~~ 64 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVG---GKPILETIIDRFIAQ-------------GFRNFYISVNYLAEMIEDYFGD 64 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEECccCHHHHHHHHCC
Confidence 58999999999973 7899999996 999999999999863 3555555666677888888876
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
...+|+. +.+ +. + ..|.|.|+.+..+.. ..-+.+.|...|++..
T Consensus 65 ~~~~~~~---i~~----------------~~--~------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~~ 108 (220)
T cd06426 65 GSKFGVN---ISY----------------VR--E------DKPLGTAGALSLLPE---------KPTDPFLVMNGDILTN 108 (220)
T ss_pred ccccCcc---EEE----------------EE--C------CCCCcchHHHHHHHh---------hCCCCEEEEcCCEeec
Confidence 4333321 111 01 1 135577877655432 1135677777775321
Q ss_pred ccccHHHHHHHHhcCCcceEeeeeCCCCcccccE
Q 012230 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (468)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i 333 (468)
... -.++-.+...+.++++-+....+....|.+
T Consensus 109 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 141 (220)
T cd06426 109 LNY-EHLLDFHKENNADATVCVREYEVQVPYGVV 141 (220)
T ss_pred cCH-HHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence 112 245666667778877766554444455543
No 42
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.33 E-value=1.7e-05 Score=84.09 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=104.8
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhC
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~ 220 (468)
+++|+||||.||||+.+.||.++|+. |++++++.++.+.+.. ....+|.+. +..+.+.++++++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~g------------~~~iivvv~-~~~~~i~~~~~~~ 65 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLG---GKSLVERVLDSCEELK------------PDRRLVIVG-HQAEEVEQSLAHL 65 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEEC---ChhHHHHHHHHHHhCC------------CCeEEEEEC-CCHHHHHHHhccc
Confidence 67899999999999988999999996 9999999999987631 123445554 4556677776532
Q ss_pred CCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccc
Q 012230 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (468)
Q Consensus 221 ~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~ 300 (468)
. .+.+ +. . ..+.|.++.+.... +.+.. .-++++|...|.++..
T Consensus 66 ~-------~i~~----------------v~--~------~~~~G~~~sv~~~~-----~~l~~-~~~~vlV~~~D~P~i~ 108 (450)
T PRK14360 66 P-------GLEF----------------VE--Q------QPQLGTGHAVQQLL-----PVLKG-FEGDLLVLNGDVPLLR 108 (450)
T ss_pred C-------CeEE----------------EE--e------CCcCCcHHHHHHHH-----HHhhc-cCCcEEEEeCCccccC
Confidence 1 1211 11 1 12466666554432 22322 1245777877876543
Q ss_pred cccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccc
Q 012230 301 KAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (468)
Q Consensus 301 ~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gN 379 (468)
..+. .++-.+.+.+++++.-+.++.+....|.+. + .++|+.. ..+|...+.+. +. -+. ..|
T Consensus 109 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-d~~g~v~-~~~ek~~~~~~---~~-----------~~~-~~~ 170 (450)
T PRK14360 109 PETLEALLNTHRSSNADVTLLTARLPNPKGYGRVF-C-DGNNLVE-QIVEDRDCTPA---QR-----------QNN-RIN 170 (450)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEE-E-CCCCCEE-EEEECCCCChh---Hh-----------cCc-EEE
Confidence 3232 445556666777665444444334467643 2 3455431 11343221110 10 011 247
Q ss_pred eeeEEEehhhhHHHHh
Q 012230 380 INQLILELGPYMEELK 395 (468)
Q Consensus 380 inn~~~~l~~l~~~l~ 395 (468)
+..++|+-+.+.+.++
T Consensus 171 ~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 171 AGIYCFNWPALAEVLP 186 (450)
T ss_pred EEEEEEEHHHHHHHHh
Confidence 8888899776666654
No 43
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.33 E-value=1.5e-05 Score=84.60 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=108.1
Q ss_pred EEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCC
Q 012230 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (468)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~ 221 (468)
.+|+||||.||||+.+.||.++|+. |++++++.++.+... . -.++|.++ +..+.+.+++.+
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~---gkpli~~~l~~l~~~----~---------~~i~vv~~-~~~~~i~~~~~~-- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKIS---GKPMINWVIDTAKKV----A---------QKVGVVLG-HEAELVKKLLPE-- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEEC---CeeHHHHHHHHHHhc----C---------CcEEEEeC-CCHHHHHHhccc--
Confidence 5799999999999988999999996 999999999988762 1 12445444 445666666542
Q ss_pred CCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcccc
Q 012230 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (468)
Q Consensus 222 ~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~ 301 (468)
+ +.++ . + ..|.|.++.+..... .+. . -+++++.+-|+++...
T Consensus 63 --~-----~~~~----------------~--~------~~~~g~~~ai~~a~~-----~l~-~-~~~vlv~~gD~p~i~~ 104 (448)
T PRK14357 63 --W-----VKIF----------------L--Q------EEQLGTAHAVMCARD-----FIE-P-GDDLLILYGDVPLISE 104 (448)
T ss_pred --c-----cEEE----------------e--c------CCCCChHHHHHHHHH-----hcC-c-CCeEEEEeCCcccCCH
Confidence 1 1111 1 1 134576665554422 222 1 3688999888865433
Q ss_pred ccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccce
Q 012230 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (468)
Q Consensus 302 ~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNi 380 (468)
.|. .++-++.+.++++++.+++..+....|.+.. .+|+... +|....+.... . .+..|+
T Consensus 105 ~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~---d~g~v~~--~e~~~~~~~~~--------------~-~~~~~~ 164 (448)
T PRK14357 105 NTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIR---DGGKYRI--VEDKDAPEEEK--------------K-IKEINT 164 (448)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEE---cCCeEEE--EECCCCChHHh--------------c-CcEEEe
Confidence 342 4566777778888777666544456777543 2565433 66432211100 0 113488
Q ss_pred eeEEEehhhhHHHHh
Q 012230 381 NQLILELGPYMEELK 395 (468)
Q Consensus 381 nn~~~~l~~l~~~l~ 395 (468)
...+|+-+.+.+.++
T Consensus 165 GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 165 GIYVFSGDFLLEVLP 179 (448)
T ss_pred EEEEEEHHHHHHHHH
Confidence 899999776666554
No 44
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.32 E-value=7e-06 Score=88.42 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=91.4
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+...||.++|+. |++++++.++++.+. .+.-+++...+..+.+.++|+.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~ivvv~~~~~~~i~~~~~~ 70 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPVA---GRPMVAWAVKAARDL-------------GARKIVVVTGHGAEQVEAALQG 70 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEEC---CeeHHHHHHHHHHhC-------------CCCeEEEEeCCCHHHHHHHhcc
Confidence 688999999999999988899999996 999999999988752 2444445555667778887752
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
.+ +.+ +. + ..|.|.|+.+..... .+. ..-+.++|.+.|+++.
T Consensus 71 ---~~-----i~~----------------v~--~------~~~~Gt~~al~~~~~-----~l~-~~~~~~lV~~gD~P~i 112 (481)
T PRK14358 71 ---SG-----VAF----------------AR--Q------EQQLGTGDAFLSGAS-----ALT-EGDADILVLYGDTPLL 112 (481)
T ss_pred ---CC-----cEE----------------ec--C------CCcCCcHHHHHHHHH-----Hhh-CCCCcEEEEeCCeecc
Confidence 11 111 11 1 135677776554322 232 2112366777788654
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEE
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITR 335 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~ 335 (468)
...+. .++-++...++++++.+.+..+..++|.+..
T Consensus 113 ~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~ 149 (481)
T PRK14358 113 RPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVR 149 (481)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEE
Confidence 33333 5566677777777665555444556887653
No 45
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.32 E-value=2e-05 Score=83.03 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=109.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+...||.++|+. |+|++++.+++++.. .-..+|++ .+..+.+.+++.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi~---gkPli~~~i~~l~~~-------------~~~i~Ivv-~~~~~~i~~~~~~ 64 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTIC---GKPMLFYILKEAFAI-------------SDDVHVVL-HHQKERIKEAVLE 64 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEEC---CccHHHHHHHHHHHc-------------CCcEEEEE-CCCHHHHHHHHHh
Confidence 356899999999999988999999996 999999999999763 11345555 4567888888875
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
. ++ .+.+..| + ...+.|+|+.+..+. ..-+++.+.+-|+++
T Consensus 65 ~--~~----~v~~~~~-----------------~-----~~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~- 105 (430)
T PRK14359 65 Y--FP----GVIFHTQ-----------------D-----LENYPGTGGALMGIE----------PKHERVLILNGDMPL- 105 (430)
T ss_pred c--CC----ceEEEEe-----------------c-----CccCCCcHHHHhhcc----------cCCCeEEEEECCccC-
Confidence 2 11 2222211 0 123567877665421 123688888778754
Q ss_pred ccccHHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccc
Q 012230 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (468)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gN 379 (468)
.++..+-.+.+.++++++-+++.......|.+.. .+|+.. ..+|...... .+.. .+..|
T Consensus 106 --~~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~---d~g~v~-~i~e~~~~~~---------~~~~------~~~~~ 164 (430)
T PRK14359 106 --VEKDELEKLLENDADIVMSVFHLADPKGYGRVVI---ENGQVK-KIVEQKDANE---------EELK------IKSVN 164 (430)
T ss_pred --CCHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEE---cCCeEE-EEEECCCCCc---------cccc------ceEEE
Confidence 2566666666777777666655433344676432 356431 1134322110 0110 11247
Q ss_pred eeeEEEehhhhHHHHh
Q 012230 380 INQLILELGPYMEELK 395 (468)
Q Consensus 380 inn~~~~l~~l~~~l~ 395 (468)
+..++|+-+.+.+.+.
T Consensus 165 ~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 165 AGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEEEEHHHHHHHHH
Confidence 8888898877665543
No 46
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.32 E-value=1.6e-05 Score=80.13 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=123.6
Q ss_pred hceEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHH
Q 012230 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQ 214 (468)
Q Consensus 139 ~kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~ 214 (468)
..|+.++|.||.||||. ...||...|++ .+++++++++.+.. ..|. +|+.|+..-.+..+
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~n-------------sGi~~I~la~~y~s~sl~~ 71 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALIN-------------SGITKIVLATQYNSESLNR 71 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHh-------------CCCcEEEEEEecCcHHHHH
Confidence 36899999999999996 48999999997 99999999998875 2354 55555555544666
Q ss_pred HHHHhC-CCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEe
Q 012230 215 ELLESN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (468)
Q Consensus 215 ~~~~~~-~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~ 293 (468)
.+.+.+ ..||. +++. ..+..|.|.-|-..+.++ .|... .+- -++|.+
T Consensus 72 ~~~k~y~~~lgV---------------------ei~~------s~eteplgtaGpl~laR~--~L~~~--~~~-~ffVLn 119 (371)
T KOG1322|consen 72 HLSKAYGKELGV---------------------EILA------STETEPLGTAGPLALARD--FLWVF--EDA-PFFVLN 119 (371)
T ss_pred HHHHHhhhccce---------------------EEEE------EeccCCCcccchHHHHHH--Hhhhc--CCC-cEEEec
Confidence 666665 23442 1333 122338898888887765 22222 222 355553
Q ss_pred cCCCccccccHHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCC
Q 012230 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (468)
Q Consensus 294 vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~ 373 (468)
.|= +++.-=-.|+-+|..+++|.+..|++-....++|++..- ...|+ | ..++|-|+++...+
T Consensus 120 sDv-i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d-~~~gr--V--~~F~EKPkd~vsnk------------ 181 (371)
T KOG1322|consen 120 SDV-ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVID-EDTGR--V--IRFVEKPKDLVSNK------------ 181 (371)
T ss_pred CCe-eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEe-cCCCc--e--eEehhCchhhhhcc------------
Confidence 333 233322488999999999999999998778889988643 22443 3 88999888664332
Q ss_pred CCCccceeeEEEehhhhHHHH
Q 012230 374 SPFPGNINQLILELGPYMEEL 394 (468)
Q Consensus 374 ~~f~gNinn~~~~l~~l~~~l 394 (468)
-|.....|+-+.+.+++
T Consensus 182 ----inaGiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 182 ----INAGIYILNPEVLDRIL 198 (371)
T ss_pred ----ccceEEEECHHHHhHhh
Confidence 25556667777666555
No 47
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.31 E-value=1.7e-05 Score=84.73 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=109.7
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+...||.++|+. |++++++.++.+.+. .+.-+++...+..+.+.++|.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~---g~pli~~~l~~l~~~-------------gi~~iiiv~~~~~~~i~~~~~~ 66 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLA---GRPMVSWPVAAAREA-------------GAGRIVLVVGHQAEKVREHFAG 66 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeC---CccHHHHHHHHHHhc-------------CCCeEEEEECCCHHHHHHHhcc
Confidence 567899999999999988999999996 999999999988752 2433344444557778888754
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
.. .+.+. . ...|.|+|+.+.... +.+. ..-+++.+.+-|+++.
T Consensus 67 ~~-------~i~~~----------------~--------~~~~~Gt~~al~~a~-----~~l~-~~~~~vlv~~gD~p~~ 109 (459)
T PRK14355 67 DG-------DVSFA----------------L--------QEEQLGTGHAVACAA-----PALD-GFSGTVLILCGDVPLL 109 (459)
T ss_pred CC-------ceEEE----------------e--------cCCCCCHHHHHHHHH-----HHhh-ccCCcEEEEECCccCc
Confidence 21 11111 1 113457777555432 2332 2236889998888654
Q ss_pred cccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCcc
Q 012230 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (468)
Q Consensus 300 ~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~g 378 (468)
...| -.++-++...++++++...+.......|.+.. ..+|+. ++..|-++.. +.+. .+. ..
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~~-----~~~~------~~~-~~ 171 (459)
T PRK14355 110 RAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVR--DADGRV----LRIVEEKDAT-----PEER------SIR-EV 171 (459)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEE--cCCCCE----EEEEEcCCCC-----hhHh------hcc-EE
Confidence 3344 25566666667777665555433345677542 234543 3333221110 0000 011 24
Q ss_pred ceeeEEEehhhhHHHHh
Q 012230 379 NINQLILELGPYMEELK 395 (468)
Q Consensus 379 Ninn~~~~l~~l~~~l~ 395 (468)
|+..++|+-+.+.+.++
T Consensus 172 ~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 172 NSGIYCVEAAFLFDAIG 188 (459)
T ss_pred EEEEEEEeHHHHHHHHH
Confidence 88888898776555553
No 48
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.27 E-value=4e-05 Score=81.28 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=85.4
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+.+.||.++|+. |+|++++.++.+.+. .+.-++....+.++.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~-------------gi~~ivvv~~~~~~~i~~~~~~ 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPVA---GRPMLAHVLAAAASL-------------GPSRVAVVVGPGAEAVAAAAAK 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEEC---CchHHHHHHHHHHhC-------------CCCcEEEEECCCHHHHHHHhhc
Confidence 578999999999999988899999996 999999999999763 2333333444567778887753
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
. +. .+.++ . . ..|.|.++...+.. +.+. .+-+++++.+.|.++.
T Consensus 69 ~---~~---~~~~~----------------~--~------~~~~G~~~sl~~a~-----~~l~-~~~~~~lv~~~D~P~i 112 (446)
T PRK14353 69 I---AP---DAEIF----------------V--Q------KERLGTAHAVLAAR-----EALA-GGYGDVLVLYGDTPLI 112 (446)
T ss_pred c---CC---CceEE----------------E--c------CCCCCcHHHHHHHH-----HHHh-ccCCCEEEEeCCcccC
Confidence 1 11 11111 1 1 12456665544332 2232 2346777887777543
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEE
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
...+. .++- +.+.+.++.+.+.+.....++|.+.
T Consensus 113 ~~~~l~~l~~-~~~~~~~~~i~~~~~~~~~~~g~~~ 147 (446)
T PRK14353 113 TAETLARLRE-RLADGADVVVLGFRAADPTGYGRLI 147 (446)
T ss_pred CHHHHHHHHH-hHhcCCcEEEEEEEeCCCCcceEEE
Confidence 22222 2233 2345667666655543445677654
No 49
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.27 E-value=4.8e-05 Score=73.70 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=80.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.++||+ ||.++|+. |+|++++.++++... ..+.-++..+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i~---gkpll~~~l~~l~~~------------~~i~~ivvv~~--~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADIA---GKPMIQHVYERAKKA------------KGLDEVVVATD--DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCcccC---CcCHHHHHHHHHHhC------------CCCCEEEEECC--cHHHHHHHHH
Confidence 4678999999999996 79999996 999999999999762 13454555543 4778888864
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+|+. ++. .. ...+.|.|++..++.. + ....+++.+.+.|+++.
T Consensus 61 ---~~~~---------------------~~~--~~----~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli 103 (239)
T cd02517 61 ---FGGK---------------------VVM--TS----PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLI 103 (239)
T ss_pred ---cCCE---------------------EEE--cC----cccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCC
Confidence 2221 111 00 1225678877666532 2 11236788888888765
Q ss_pred ccccH-HHHHHHHhc-CCcceEeeeeC
Q 012230 300 FKAIP-ASLGVSATK-QYHVNSLAVPR 324 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~-~~~~~~kvv~r 324 (468)
...+. .++-.+... +++++.-+++.
T Consensus 104 ~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (239)
T cd02517 104 PPEMIDQVVAALKDDPGVDMATLATPI 130 (239)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEEc
Confidence 43332 344444344 56666555553
No 50
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.23 E-value=2.6e-05 Score=80.47 Aligned_cols=196 Identities=16% Similarity=0.168 Sum_probs=110.0
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
+|+||||.||||+. +.||.++|+. |+ +++++.++.+... .+.-++....+..+.+.++|.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFG---GKYRIIDFPLSNCINS-------------GIRRIGVLTQYKSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceec---ceeeEeeehhhhhhhc-------------CCceEEEEeccChHHHHHHHH
Confidence 48999999999984 6899999996 89 7999999988763 355556666677788999998
Q ss_pred hCCCCCCCC---CcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 219 SNSYFGMKP---TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 219 ~~~~FGl~~---~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
+. +++.. ..+.+ +. ......-...|.|+|+....... .+....-+++.|.+-|
T Consensus 65 ~~--~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~Gt~~al~~a~~-----~~~~~~~~~~lv~~gD 120 (361)
T TIGR02091 65 RG--WDFDGFIDGFVTL----------------LP-AQQRESGTDWYQGTADAVYQNLD-----LIEDYDPEYVLILSGD 120 (361)
T ss_pred hc--cCccCccCCCEEE----------------eC-CcccCCCCccccCcHHHHHHHHH-----HHHhcCCCEEEEecCC
Confidence 52 33321 01111 10 00000112346898876654322 2322223577788777
Q ss_pred CCccccccH-HHHHHHHhcCCcceEeeeeC--CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCC
Q 012230 296 NGLLFKAIP-ASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (468)
Q Consensus 296 N~l~~~~Dp-~~lG~~~~~~~~~~~kvv~r--~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g 372 (468)
++ . ..|. .++-.+..++.++.+-+.+. .....+|.+.. ..+|+ + .++.|-+.. ++....+ .+
T Consensus 121 ~l-~-~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ekp~~------~~~~~~~-~~ 185 (361)
T TIGR02091 121 HI-Y-KMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQV--DEDGR--I--VDFEEKPAN------PPSIPGM-PD 185 (361)
T ss_pred EE-E-cCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEE--CCCCC--E--EEEEECCCC------ccccccc-cc
Confidence 63 2 2232 45556666676665544432 24456776653 12343 2 455443211 1111000 01
Q ss_pred CCCCccceeeEEEehhhhHHHHh
Q 012230 373 YSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 373 ~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
. +..|+..+.|+-+.+.+.+.
T Consensus 186 ~--~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 186 F--ALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred c--cEEeeeEEEEcHHHHHHHHH
Confidence 1 12489999999776555444
No 51
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.20 E-value=6e-05 Score=73.28 Aligned_cols=185 Identities=17% Similarity=0.127 Sum_probs=103.9
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++++|+||||.++||+ +|.++|+. |+|++++.++.+... .+..+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i~---Gkpll~~~l~~l~~~-------------~i~~ivvv~~--~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADIG---GKPMIVRVYERASKA-------------GADRVVVATD--DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCcccccC---CcCHHHHHHHHHHhc-------------CCCeEEEECC--cHHHHHHHHH
Confidence 5788999999999995 79999996 999999999998763 2444444443 4778887764
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+|.. ++. .. ...+.|.+++..++.. +...+-+++.+...|+++.
T Consensus 61 ---~~~~---------------------v~~--~~----~~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pli 104 (245)
T PRK05450 61 ---FGGE---------------------VVM--TS----PDHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPLI 104 (245)
T ss_pred ---cCCE---------------------EEE--CC----CcCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCCC
Confidence 2321 111 00 1235567766655432 2111336788888888765
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeC------CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCC
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPR------KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r------~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g 372 (468)
...+. .++-.+..++.++..-++++ ...+.+| ++ + ..+|+. ++..+.+..- ..++ ..+...
T Consensus 105 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~-~-d~~g~v----~~~~e~~~~~--~~~~---~~~~~~ 172 (245)
T PRK05450 105 PPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVK-VV-L-DADGRA----LYFSRAPIPY--GRDA---FADSAP 172 (245)
T ss_pred CHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCE-EE-e-CCCCcE----EEecCCCCCC--CCCc---cccccC
Confidence 33332 34555545566776666555 1223344 43 2 234553 4555543110 0000 000000
Q ss_pred CCCCccceeeEEEehhhhHHHH
Q 012230 373 YSPFPGNINQLILELGPYMEEL 394 (468)
Q Consensus 373 ~~~f~gNinn~~~~l~~l~~~l 394 (468)
.+. ..|+....|+-+.+....
T Consensus 173 ~~~-~~~~Giy~~~~~~l~~~~ 193 (245)
T PRK05450 173 TPV-YRHIGIYAYRRGFLRRFV 193 (245)
T ss_pred ccc-cEEEEEEecCHHHHHHHH
Confidence 011 359999999977655443
No 52
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.13 E-value=5.3e-05 Score=78.03 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=91.8
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
+|+||||.||||+. +.||.++|+. |++++++.++.+.+. .+ .++|+|+....+.+.+++.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~---g~pli~~~l~~l~~~-------------gi~~i~vv~~~~~~~~i~~~~~ 65 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVA---NKPILQYAIEDLAEA-------------GITDIGIVVGPVTGEEIKEIVG 65 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEEC---CEeHHHHHHHHHHHC-------------CCCEEEEEeCCCCHHHHHHHHh
Confidence 68999999999974 7899999996 999999999988752 34 3566666658899999998
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
+...||++ +.+. . . ..|.|.++.+.+... .+. . -.++ +..-|++.
T Consensus 66 ~~~~~~~~---~~~~----------------~--~------~~~~G~~~al~~a~~-----~l~-~-~~~l-i~~gD~~~ 110 (353)
T TIGR01208 66 EGERFGAK---ITYI----------------V--Q------GEPLGLAHAVYTARD-----FLG-D-DDFV-VYLGDNLI 110 (353)
T ss_pred cccccCce---EEEE----------------E--C------CCCCCHHHHHHHHHH-----hcC-C-CCEE-EEECCeec
Confidence 75555542 1111 1 0 136788776665432 221 1 1344 55567754
Q ss_pred ccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEE
Q 012230 299 LFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 299 ~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
. .| -.++-.|.++++++++-+.+.......|.+.
T Consensus 111 ~--~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~ 145 (353)
T TIGR01208 111 Q--DGISRFVKSFEEKDYDALILLTKVRDPTAFGVAV 145 (353)
T ss_pred C--ccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEE
Confidence 2 23 2566777788888877766543335567544
No 53
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.12 E-value=0.00011 Score=78.19 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=102.9
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhC
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~ 220 (468)
+.+|+||||.||||+...||.++|+. |++++++.++++... .+.-++....+..+.+.+++.+.
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~ll~i~---Gkpli~~~l~~l~~~-------------gi~~iivvv~~~~~~i~~~~~~~ 66 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVLHKVC---GKPMVEHVVDSVKKA-------------GIDKIVTVVGHGAEEVKEVLGDR 66 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhhCEeC---CccHHHHHHHHHHhC-------------CCCeEEEEeCCCHHHHHHHhcCC
Confidence 56899999999999988999999996 999999999998652 23333444445566677665431
Q ss_pred CCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccc
Q 012230 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (468)
Q Consensus 221 ~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~ 300 (468)
+. ++. + ..+.|+++.+..... .+. ..-+++++.+.|+++..
T Consensus 67 ---------~~----------------~~~--~------~~~~g~~~al~~a~~-----~l~-~~~d~vlv~~~D~p~i~ 107 (458)
T PRK14354 67 ---------SE----------------FAL--Q------EEQLGTGHAVMQAEE-----FLA-DKEGTTLVICGDTPLIT 107 (458)
T ss_pred ---------cE----------------EEE--c------CCCCCHHHHHHHHHH-----Hhc-ccCCeEEEEECCccccC
Confidence 11 111 1 124566665444322 232 21267888888886544
Q ss_pred cccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccc
Q 012230 301 KAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (468)
Q Consensus 301 ~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gN 379 (468)
..|. .++-++...+++.++.+........+|.+.. ..+|+. +..+|.....+. .. . .+..|
T Consensus 108 ~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~--d~~~~V-~~~~ek~~~~~~--------~~------~-~~~~~ 169 (458)
T PRK14354 108 AETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIR--NENGEV-EKIVEQKDATEE--------EK------Q-IKEIN 169 (458)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEE--cCCCCE-EEEEECCCCChH--------Hh------c-CcEEE
Confidence 4332 4555555566666554444333344665432 234542 112343221100 00 0 11358
Q ss_pred eeeEEEehhhhHHHHh
Q 012230 380 INQLILELGPYMEELK 395 (468)
Q Consensus 380 inn~~~~l~~l~~~l~ 395 (468)
+...+|+-+.+.+.++
T Consensus 170 ~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 170 TGTYCFDNKALFEALK 185 (458)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 8888898776655543
No 54
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.11 E-value=8.1e-05 Score=78.83 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=48.5
Q ss_pred EEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHHh
Q 012230 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~~ 219 (468)
-+|+||||.||||+.+.||.++|+. |+|++++.++.+.+. .+ .++|.++. ..+.+.+++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------g~~~iiiv~~~-~~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVIDAARAL-------------GPQKIHVVYGH-GAEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeC---CccHHHHHHHHHHhC-------------CCCeEEEEECC-CHHHHHHHhcC
Confidence 4799999999999988899999996 999999999988752 23 34555554 46778887764
No 55
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=6.1e-05 Score=74.50 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=104.3
Q ss_pred EEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHH
Q 012230 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~ 218 (468)
.|+||||.||||. ...||.++|+. +|+.+++-++++... .|. +.|.++..+....++++.
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~---~KPmi~y~l~~L~~a-------------GI~dI~II~~~~~~~~~~~llG 66 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVY---DKPMIYYPLETLMLA-------------GIRDILIVVGPEDKPTFKELLG 66 (286)
T ss_pred cEEecCcCccccccccccCCcccceec---CcchhHhHHHHHHHc-------------CCceEEEEecCCchhhhhhhhc
Confidence 4899999999997 48999999997 999999999999763 354 566677778888888888
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
+-..||++ +.+ .....|.|=+..+..- +++. |-+-+.++--||++
T Consensus 67 dgs~~gv~---itY------------------------~~Q~~p~GlA~Av~~a------~~fv--~~~~f~l~LGDNi~ 111 (286)
T COG1209 67 DGSDFGVD---ITY------------------------AVQPEPDGLAHAVLIA------EDFV--GDDDFVLYLGDNIF 111 (286)
T ss_pred CccccCcc---eEE------------------------EecCCCCcHHHHHHHH------Hhhc--CCCceEEEecCcee
Confidence 88889975 111 3345788988888743 3454 33446667789987
Q ss_pred cccccHHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCc
Q 012230 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (468)
Q Consensus 299 ~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~ 342 (468)
.... ..++-.+.+.+.+...-+.+-...++.|++.. ..+|+
T Consensus 112 ~~~l-~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~--d~~~~ 152 (286)
T COG1209 112 QDGL-SELLEHFAEEGSGATILLYEVDDPSRYGVVEF--DEDGK 152 (286)
T ss_pred ccCh-HHHHHHHhccCCCcEEEEEEcCCcccceEEEE--cCCCc
Confidence 6522 45666666656666666666567789987654 23464
No 56
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.09 E-value=8.8e-05 Score=71.37 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=81.7
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+||||.||||+. ..||.++|+. |++++++.++.+... .+.-+++..++..+.+.+++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~---g~~li~~~l~~l~~~-------------gi~~i~vv~~~~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEIN---GKPLLERQIETLKEA-------------GIDDIVIVTGYKKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeEC---CEEHHHHHHHHHHHC-------------CCceEEEEeccCHHHHHHHHhc
Confidence 48999999999975 5799999996 899999999988752 3544455555678888888864
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
. +| +. ++. .. .+.+.|.++.+.+... .+ + ++++|...|++
T Consensus 65 ~--~~-----~~----------------~~~--~~----~~~~~g~~~s~~~~~~-----~~---~-~~~lv~~~D~~-- 104 (229)
T cd02523 65 Y--PN-----IK----------------FVY--NP----DYAETNNIYSLYLARD-----FL---D-EDFLLLEGDVV-- 104 (229)
T ss_pred c--CC-----eE----------------EEe--Cc----chhhhCcHHHHHHHHH-----Hc---C-CCEEEEeCCEe--
Confidence 3 12 11 121 11 1235777665544322 22 2 57888877773
Q ss_pred ccccHHHHHHHHhcCCcceEeeee
Q 012230 300 FKAIPASLGVSATKQYHVNSLAVP 323 (468)
Q Consensus 300 ~~~Dp~~lG~~~~~~~~~~~kvv~ 323 (468)
.++.++-.+.+.+.++++-+.+
T Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 105 --FDPSILERLLSSPADNAILVDK 126 (229)
T ss_pred --cCHHHHHHHHcCCCCCeEEEcc
Confidence 3566777777888887766555
No 57
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.09 E-value=5.6e-05 Score=81.30 Aligned_cols=196 Identities=19% Similarity=0.160 Sum_probs=107.7
Q ss_pred EEEEecCCCCCcCC----cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 142 AFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 142 avv~LaGG~GTRLG----~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
-+|+||||.||||+ .+.||.++|+. .++|++++.++++..+. .-..+|.|+..-...+.+.+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l~--g~~~ll~~tl~~l~~~~------------~~~iviv~~~~~~~~~~~~l 67 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLALV--GDLTMLQQTLKRLAGLP------------CSSPLVICNEEHRFIVAEQL 67 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEcC--CCCcHHHHHHHHHhcCC------------CcCcEEecCHHHHHHHHHHH
Confidence 36899999999997 35799999984 24999999999887531 11344666554444556666
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHH--CCceEEEEEecC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD--AGLKWVLFFQDT 295 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~--~G~~yi~v~~vD 295 (468)
++. |++. -+++. +..|.|+|+...... ..+.+ .+-.++.|.+.|
T Consensus 68 ~~~---~~~~------------------~~~i~--------Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D 113 (468)
T TIGR01479 68 REI---GKLA------------------SNIIL--------EPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAAD 113 (468)
T ss_pred HHc---CCCc------------------ceEEe--------cccccCchHHHHHHH-----HHHHHHHCCCcEEEEecCc
Confidence 542 2221 01222 235667776654321 11222 233578888878
Q ss_pred CCccccccH-HHHHHH---HhcCCcceEeeeeCCCCcccccEEEEecCC--CceeEEEEecCCcchhHhhcCCCCCCCCC
Q 012230 296 NGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMVINVEYNQLDPLLRATGFPDGDVNC 369 (468)
Q Consensus 296 N~l~~~~Dp-~~lG~~---~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~--g~~~v~~VEYsel~~~l~~~~~~~g~l~~ 369 (468)
+.+....+. .++-.+ .+++..+++-+.+..|...+|.+..-...+ +...| ...-|-|+.-.++. .+.
T Consensus 114 ~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~l~- 186 (468)
T TIGR01479 114 HVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQV--QRFVEKPDLATAQA----YLE- 186 (468)
T ss_pred eeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEE--eEEEECCChHHHHH----HHh-
Confidence 754321111 122222 334555666665666878899886421101 21222 33334433211110 010
Q ss_pred CCC-CCCCccceeeEEEehhhhHHHHhh
Q 012230 370 ETG-YSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 370 ~~g-~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
.| | +| |+.++.|+.+.+.+.+.+
T Consensus 187 -~g~~-~w--NsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 187 -SGDY-YW--NSGMFLFRASRYLAELKK 210 (468)
T ss_pred -cCCe-EE--EeeEEEEEHHHHHHHHHH
Confidence 12 2 34 999999998888777765
No 58
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.05 E-value=3.8e-05 Score=75.45 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=88.2
Q ss_pred EEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
-+|+||||.||||+. ..||.++|+. |++++++.++.+... .+.-+++...+..+.+.++|.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-------------gi~~v~iv~~~~~~~i~~~~~ 65 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYVVEEAVEA-------------GIEDILIVTGRGKRAIEDHFD 65 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEEC---CEEHHHHHHHHHHhC-------------CCCEEEEEeCCcHHHHHHHhc
Confidence 479999999999975 7899999996 999999999988752 354444555566888999997
Q ss_pred hCCCCCCC---CCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 219 SNSYFGMK---PTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 219 ~~~~FGl~---~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
+...++.. ...+..+.+-.. + .....+.. .....|.|.|+.+..... .+ +-+.+.|..-|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~i~~------~~~~~~~G~~~al~~~~~-----~~---~~~~~lv~~gD 128 (260)
T TIGR01099 66 TSYELEHQLEKRGKEELLKEVRS--I-SPLATIFY------VRQKEQKGLGHAVLCAEP-----FV---GDEPFAVILGD 128 (260)
T ss_pred ccHHHHHHHHhhhhHHHHHHhhh--c-cccceEEE------EecCCCCCHHHHHHHHHH-----hh---CCCCEEEEecc
Confidence 42111000 000000000000 0 00000111 112357888887665432 22 22446667777
Q ss_pred CCcccc-cc-HHHHHHHHhcCCcc-eEeeeeCCCCcccccEE
Q 012230 296 NGLLFK-AI-PASLGVSATKQYHV-NSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 296 N~l~~~-~D-p~~lG~~~~~~~~~-~~kvv~r~~~e~~G~i~ 334 (468)
++.... .| -.++-+|.++++++ +...++.....+.|.+.
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~g~v~ 170 (260)
T TIGR01099 129 DIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVID 170 (260)
T ss_pred ceecCCcHHHHHHHHHHHHhCCCEEEEEECChhhcccCceEE
Confidence 865432 13 25666777777775 22222222335567654
No 59
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.02 E-value=3.4e-05 Score=76.15 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=50.6
Q ss_pred EEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
-+|+||||.||||+. ..||.++|+. |++++++.++.+.+. .+.-+++...+..+.+.++|.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~---gkpli~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~ 65 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPVIQYIVEEAVAA-------------GIEDIIIVTGRGKRAIEDHFD 65 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEeCCchHHHHHHhC
Confidence 479999999999974 7899999996 999999999998752 354455666677888999986
Q ss_pred h
Q 012230 219 S 219 (468)
Q Consensus 219 ~ 219 (468)
.
T Consensus 66 ~ 66 (267)
T cd02541 66 R 66 (267)
T ss_pred C
Confidence 4
No 60
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.99 E-value=0.00028 Score=75.26 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=83.0
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||+...||.++|+. |+|++++.++.+... .+ ..++.++ +..+.+.+++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~---gkpli~~~i~~l~~~-------------gi~~i~vv~~-~~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLA---GKPMVQHVIDAANEL-------------GAQHVHLVYG-HGGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeC---ChhHHHHHHHHHHhc-------------CCCcEEEEEC-CCHHHHHHhhc
Confidence 578999999999999988899999996 999999999988542 23 3455554 45666777664
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
.. ++. ++. + ..+.|.|+....... .+. .-++++|...|.++
T Consensus 68 ~~--------~~~----------------~i~--~------~~~~Gt~~al~~a~~-----~l~--~~~~vlV~~gD~P~ 108 (456)
T PRK09451 68 DE--------PLN----------------WVL--Q------AEQLGTGHAMQQAAP-----FFA--DDEDILMLYGDVPL 108 (456)
T ss_pred cC--------CcE----------------EEE--C------CCCCCcHHHHHHHHH-----hhc--cCCcEEEEeCCccc
Confidence 21 111 122 1 136687775554322 221 23678888888865
Q ss_pred cccccH-HHHHHHHhcCCcceEeeeeCCCCcccccE
Q 012230 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (468)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i 333 (468)
....|. .++-++.+.+ ..+.+++......+|.+
T Consensus 109 i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v 142 (456)
T PRK09451 109 ISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRI 142 (456)
T ss_pred CCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEE
Confidence 433332 3334443333 33344443333557875
No 61
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.95 E-value=0.00047 Score=66.68 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=77.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++++|+||+|.++||+ +|.++|+. |++++++.++++.+.. .+.-+++++. ++.+.+++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~---GkPli~~~i~~l~~~~------------~~~~ivv~t~--~~~i~~~~~~ 61 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDIL---GKPMIQHVYERAAQAA------------GVEEVYVATD--DQRIEDAVEA 61 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccC---CcCHHHHHHHHHHhcC------------CCCeEEEECC--hHHHHHHHHH
Confidence 4788999999999995 59999996 9999999999987631 2444444443 4778888875
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+|.. ++.. . ...+.|.+++..++.. + +.+++.+.+.|+++.
T Consensus 62 ---~~~~---------------------v~~~-~-----~~~~~g~~~~~~a~~~------~---~~d~~lv~~~D~P~i 102 (238)
T PRK13368 62 ---FGGK---------------------VVMT-S-----DDHLSGTDRLAEVMLK------I---EADIYINVQGDEPMI 102 (238)
T ss_pred ---cCCe---------------------EEec-C-----ccCCCccHHHHHHHHh------C---CCCEEEEEcCCcCcC
Confidence 2321 1110 0 1224667765554422 2 457889999999866
Q ss_pred ccccH-HHHHHHHhcCC-cceEeeee
Q 012230 300 FKAIP-ASLGVSATKQY-HVNSLAVP 323 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~-~~~~kvv~ 323 (468)
...+- .++-.+...+. ++..-+++
T Consensus 103 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 128 (238)
T PRK13368 103 RPRDIDTLIQPMLDDPSINVATLCAP 128 (238)
T ss_pred CHHHHHHHHHHHHHCCCccceeEEEE
Confidence 44332 34444444443 44333433
No 62
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.94 E-value=0.00012 Score=70.17 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=84.1
Q ss_pred EEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHH
Q 012230 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 142 avv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~ 217 (468)
-+|+||||.||||+ .+.||.++|+. |++++++.++.+.+. .+ .++|.+.....+.+.+++
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv~---g~pli~~~l~~l~~~-------------g~~~iivv~~~~~~~~i~~~l 65 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPVA---NKPMIWYPLDWLEKA-------------GFEDVIVVVPEEEQAEISTYL 65 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEEC---CeeHHHHHHHHHHHC-------------CCCeEEEEECHHHHHHHHHHH
Confidence 36889999999997 37899999997 999999999998862 23 345555544456788888
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCC
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 297 (468)
++..+ .... ...... .....+.|.|+........ + .+.+.|.+-|.+
T Consensus 66 ~~~~~-~~~~-----------------~~~~~~------~~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i 112 (214)
T cd04198 66 RSFPL-NLKQ-----------------KLDEVT------IVLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLI 112 (214)
T ss_pred Hhccc-ccCc-----------------ceeEEE------ecCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccc
Confidence 75321 1000 001111 1123578999998877542 1 234666666643
Q ss_pred ccccccH-HHHHHHHhcCCcceEeeeeC
Q 012230 298 LLFKAIP-ASLGVSATKQYHVNSLAVPR 324 (468)
Q Consensus 298 l~~~~Dp-~~lG~~~~~~~~~~~kvv~r 324 (468)
. ..|. .++-.+...++.+++-+.+.
T Consensus 113 ~--~~~l~~~l~~h~~~~~~~t~~~~~~ 138 (214)
T cd04198 113 T--DLPLIELVDLHRSHDASLTVLLYPP 138 (214)
T ss_pred c--ccCHHHHHHHHhccCCcEEEEEecc
Confidence 2 2333 55667777788877755553
No 63
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=97.93 E-value=8.8e-05 Score=67.16 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=43.4
Q ss_pred EEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
+||||||.|+|||. ||.++|++ |+|++++.++.+.... .=+++|.+.. +++.+++.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i~---g~~li~~~l~~l~~~~------------~~~Ivvv~~~---~~~~~~~~ 56 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPIG---GKPLIERVLEALREAG------------VDDIVVVTGE---EEIYEYLE 56 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEET---TEEHHHHHHHHHHHHT------------ESEEEEEEST---HHHHHHHT
T ss_pred CEEECCcCcccCCC--CccceeEC---CccHHHHHHHHhhccC------------CceEEEecCh---HHHHHHHh
Confidence 58999999999984 99999996 9999999999998752 1245566655 45555553
No 64
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=97.92 E-value=7.9e-05 Score=75.67 Aligned_cols=162 Identities=14% Similarity=0.047 Sum_probs=94.1
Q ss_pred eEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
+-+|+||||.||||+. ..||.++|+. |++++++.++.+... .|--++....+..+.+.++|
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~---g~pii~~~l~~l~~~-------------gi~~i~vv~~~~~~~i~~~~ 72 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA-------------GITEIVLVTHSSKNSIENHF 72 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEeCCCHHHHHHHH
Confidence 4479999999999975 7999999996 999999999998762 35556667777889999999
Q ss_pred HhCCCCC--CCCC-cEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEec
Q 012230 218 ESNSYFG--MKPT-QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (468)
Q Consensus 218 ~~~~~FG--l~~~-~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~v 294 (468)
.....++ +++. +..+ .++--... ..|..+. ......|.|+|+.+..... +.. . +-++|.+-
T Consensus 73 ~~~~~~~~~l~~~~~~~~-~~e~~~i~--~~~~~i~-----~~~q~~~~Gtg~Av~~a~~------~~~-~-~~~lVl~g 136 (302)
T PRK13389 73 DTSFELEAMLEKRVKRQL-LDEVQSIC--PPHVTIM-----QVRQGLAKGLGHAVLCAHP------VVG-D-EPVAVILP 136 (302)
T ss_pred ccchhhhhhhhhhhhhHH-HHhhhhcc--ccCceEE-----EeecCCCCChHHHHHHHHH------HcC-C-CCEEEEeC
Confidence 7432222 1100 0000 00000000 0010000 0112467899887765432 221 2 33555667
Q ss_pred CCCcc------ccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEE
Q 012230 295 TNGLL------FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITR 335 (468)
Q Consensus 295 DN~l~------~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~ 335 (468)
||++. ...|. .++-+|.+.+++ ++-+.+.....++|++..
T Consensus 137 D~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~~~yGvv~~ 183 (302)
T PRK13389 137 DVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADVTAYGVVDC 183 (302)
T ss_pred cceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccCCcceEEEe
Confidence 77542 12342 567777777766 344444434456787754
No 65
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.90 E-value=0.00043 Score=65.93 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=80.5
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++++|+||||.|+||+ .|.++|+. |+|++++.++.+.... .+..++.++ .++.+.+++.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l~---Gkpll~~~l~~l~~~~------------~~~~IvV~~--~~~~i~~~~~~ 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPLG---GKPLIAWTIEAALESK------------LFDRVVVST--DDEEIAEVARK 60 (223)
T ss_pred CeEEEEecCCCCCCCC---CcccchhC---CccHHHHHHHHHHhCC------------CCCEEEEEC--CcHHHHHHHHH
Confidence 5789999999999996 59999986 9999999999998631 233344443 35667776654
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHC--CceEEEEEecCCC
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--GLKWVLFFQDTNG 297 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~--G~~yi~v~~vDN~ 297 (468)
+ |.. ..+ + ..+ ....-..|.++..... ++.+... +.+++.+...|.+
T Consensus 61 ~---~~~----~~~-------~-----------~~~-~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~P 109 (223)
T cd02513 61 Y---GAE----VPF-------L-----------RPA-ELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTSP 109 (223)
T ss_pred h---CCC----cee-------e-----------CCh-HHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCCC
Confidence 2 221 000 0 000 1111122334433332 2233332 3578999999998
Q ss_pred ccccccH-HHHHHHHhcCCcceEeeeeCC
Q 012230 298 LLFKAIP-ASLGVSATKQYHVNSLAVPRK 325 (468)
Q Consensus 298 l~~~~Dp-~~lG~~~~~~~~~~~kvv~r~ 325 (468)
+....+- .++-.+..++.++.+-+++.+
T Consensus 110 ~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 110 LRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 7754332 445555556778777766643
No 66
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00027 Score=73.39 Aligned_cols=196 Identities=18% Similarity=0.232 Sum_probs=125.5
Q ss_pred hceEEEEecCCCCCcCCc---CCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHH
Q 012230 139 KNAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRT 213 (468)
Q Consensus 139 ~kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t 213 (468)
+++-+++||||+|+||+- ..+|..+|.+ || -+.+..+-.+.. ..| .+++.|-...| ..
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFg---GkYRiIDF~LSN~vN-------------SGi~~I~VltQy~~~-SL 66 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFG---GKYRIIDFALSNCVN-------------SGIRRIGVLTQYKSH-SL 66 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccC---ceeEEEeEEcccccc-------------cCCCeEEEEeccchh-HH
Confidence 367889999999999974 7889999985 43 233333332221 233 46777777777 78
Q ss_pred HHHHHhCCCCCCCCCc--EEEEecCceeeeecCCCceeccCCCCCccccccCCChh-HhHHHhhcChhHHHHHCCceEEE
Q 012230 214 QELLESNSYFGMKPTQ--VKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVL 290 (468)
Q Consensus 214 ~~~~~~~~~FGl~~~~--v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~-i~~aL~~sG~l~~l~~~G~~yi~ 290 (468)
..++.....|++++.+ |+++ |.- .....--|+ -|+.+ +|..| ..+.+-+.+|+.
T Consensus 67 ~~Hi~~G~~w~l~~~~~~v~il-----p~~-----------~~~~~~~wy-~Gtadai~Qnl------~~i~~~~~eyvl 123 (393)
T COG0448 67 NDHIGRGWPWDLDRKNGGVFIL-----PAQ-----------QREGGERWY-EGTADAIYQNL------LIIRRSDPEYVL 123 (393)
T ss_pred HHHhhCCCccccccccCcEEEe-----Cch-----------hccCCCcce-eccHHHHHHhH------HHHHhcCCCEEE
Confidence 8888888888776422 2222 111 001112244 34443 44434 235567899999
Q ss_pred EEecCCCccccccH-HHHHHHHhcCCcceEeeee--CCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCC
Q 012230 291 FFQDTNGLLFKAIP-ASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDV 367 (468)
Q Consensus 291 v~~vDN~l~~~~Dp-~~lG~~~~~~~~~~~kvv~--r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l 367 (468)
|.+-|=+ -..|. .++-+|++.++|+++-|.+ +....+.|++ .+ .++|+. +|+.|-|.. +..
T Consensus 124 IlsgDhI--YkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim-~~-D~~~~i----~~F~eKp~~--------~~~ 187 (393)
T COG0448 124 ILSGDHI--YKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVM-NV-DENGRI----IEFVEKPAD--------GPP 187 (393)
T ss_pred EecCCEE--EecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCce-EE-CCCCCE----EeeeeccCc--------CCc
Confidence 9866653 23575 7899999999999998877 4566678844 33 456653 788776554 111
Q ss_pred CCCCCCCCCccceeeEEEehhhhHHHHhh
Q 012230 368 NCETGYSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 368 ~~~~g~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
. .+ .+...+..|+-+.|.+.|++
T Consensus 188 ~----~~--laSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 188 S----NS--LASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred c----cc--eeeeeeEEEcHHHHHHHHHH
Confidence 0 11 35788899999999998875
No 67
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=3.2e-05 Score=75.02 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=58.1
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhC
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~ 220 (468)
+.+|+||.|.|||||.+.||+++.++ |++++.+++++|.... .--.+|.|+++..+.+.+|+.++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev~---gr~ii~~~i~~L~~~g------------i~e~vvV~~g~~~~lve~~l~~~ 68 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEVG---GREIIYRTIENLAKAG------------ITEFVVVTNGYRADLVEEFLKKY 68 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhcC---CeEeHHHHHHHHHHcC------------CceEEEEeccchHHHHHHHHhcC
Confidence 46899999999999999999999987 9999999999987631 23468999999999999999987
Q ss_pred CC
Q 012230 221 SY 222 (468)
Q Consensus 221 ~~ 222 (468)
++
T Consensus 69 ~~ 70 (239)
T COG1213 69 PF 70 (239)
T ss_pred Cc
Confidence 64
No 68
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.78 E-value=0.00019 Score=66.04 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=34.4
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+++|+||||.|+|||. ||.++|+. |+|++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~---g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLD---GKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeC---CeeHHHHHHHHHHh
Confidence 4689999999999985 99999996 99999999999875
No 69
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.73 E-value=0.00049 Score=66.11 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=47.4
Q ss_pred EEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHH
Q 012230 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELL 217 (468)
Q Consensus 142 avv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~ 217 (468)
-+|+||||.|+||+. +.||.++|++ |++++++.++.+... .+. .+|++. ...+.+.+++
T Consensus 2 ~avIlagg~g~rl~plt~~~pK~llpv~---g~pli~~~l~~l~~~-------------gi~~i~vv~~-~~~~~~~~~~ 64 (216)
T cd02507 2 QAVVLADGFGSRFLPLTSDIPKALLPVA---NVPLIDYTLEWLEKA-------------GVEEVFVVCC-EHSQAIIEHL 64 (216)
T ss_pred eEEEEeCCCccccCccccCCCcccceEC---CEEHHHHHHHHHHHC-------------CCCeEEEEeC-CcHHHHHHHH
Confidence 367899999999974 7899999997 999999999988752 354 455555 5556677777
Q ss_pred HhC
Q 012230 218 ESN 220 (468)
Q Consensus 218 ~~~ 220 (468)
.+.
T Consensus 65 ~~~ 67 (216)
T cd02507 65 LKS 67 (216)
T ss_pred Hhc
Confidence 654
No 70
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.71 E-value=6.4e-05 Score=70.86 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=47.8
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHHh
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~~ 219 (468)
+.+|+||||.|||||. .||.++|+. |++++++.++.+... .+. +++.++ ..++.++.++++
T Consensus 1 m~aIILAgG~gsRmg~-~~K~Ll~i~---GkplI~~vi~~l~~~-------------~i~~I~Vv~~-~~~~~~~~~l~~ 62 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG-VEKPLIEVC---GRCLIDHVLSPLLKS-------------KVNNIIIATS-PHTPKTEEYINS 62 (183)
T ss_pred CeEEEECCccCccCCC-CCceEeEEC---CEEHHHHHHHHHHhC-------------CCCEEEEEeC-CCHHHHHHHHhh
Confidence 3578999999999975 799999996 999999999999752 233 455555 456778888864
No 71
>PLN02917 CMP-KDO synthetase
Probab=97.70 E-value=0.0011 Score=66.98 Aligned_cols=182 Identities=10% Similarity=0.034 Sum_probs=105.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|++|+|.++||+ +|.++|+. |+|++++.++++.... .+..++.. ..++++.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i~---GkPLL~~vi~~a~~~~------------~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHIL---GKPMIQRTWERAKLAT------------TLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeEC---CEEHHHHHHHHHHcCC------------CCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999996 69999996 9999999999987531 23444444 346778887764
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+ |.. +++ . ....+.|.|.+..++. .+. ...+++.+.+-|.++.
T Consensus 107 ~---~v~---------------------vi~--~----~~~~~~GT~~~~~a~~------~l~-~~~d~Vlil~gD~PlI 149 (293)
T PLN02917 107 F---GAD---------------------VIM--T----SESCRNGTERCNEALK------KLE-KKYDIVVNIQGDEPLI 149 (293)
T ss_pred c---CCE---------------------EEe--C----CcccCCchHHHHHHHH------hcc-CCCCEEEEecCCcCCC
Confidence 2 211 222 0 0123568888865542 232 2357899998888876
Q ss_pred ccccH-HHHHHHHhcCCcc--eEeeeeCCC--CcccccEEEEecCCCcee--E-E-EEecCCcchhHhhcCCCCCCCCCC
Q 012230 300 FKAIP-ASLGVSATKQYHV--NSLAVPRKA--KEAIGGITRLTHADGRSM--V-I-NVEYNQLDPLLRATGFPDGDVNCE 370 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~--~~kvv~r~~--~e~~G~i~~~~~~~g~~~--v-~-~VEYsel~~~l~~~~~~~g~l~~~ 370 (468)
..-+- .++-.+. .+.++ +..+..-.+ ....|.+.++..++|+.. . . ++|+.+-. ++...
T Consensus 150 ~~~tI~~li~~~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~--------~~~~~--- 217 (293)
T PLN02917 150 EPEIIDGVVKALQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK--------VNPQF--- 217 (293)
T ss_pred CHHHHHHHHHHHH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc--------ccccc---
Confidence 44322 2333332 33333 223232222 255677765545567521 0 0 12332210 10111
Q ss_pred CCCCCCccceeeEEEehhhhHHHHh
Q 012230 371 TGYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 371 ~g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
.+--|+.+..|+.++|. .+.
T Consensus 218 ----i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 218 ----PYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred ----ceEEEEEEEEeCHHHHH-HHH
Confidence 11249999999999887 553
No 72
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.65 E-value=7.3e-05 Score=72.69 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=50.0
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHHh
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~~ 219 (468)
|++|+||||.|+|||.+.||..+++. |++++++.++.+.+. ..+- ++|.++....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~---Gkpvl~~tl~~f~~~------------~~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELG---GKPVLEYTLEAFLAS------------PEIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEET---TEEHHHHHHHHHHTT------------TTESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEEC---CeEeHHHHHHHHhcC------------CCCCeEEEEecchhHHHHHHhhcC
Confidence 68999999999999999999999996 999999999998753 1333 5555666666777777776
No 73
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00098 Score=66.69 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=121.0
Q ss_pred eEEEEecCC--CCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 141 AAFVLVAGG--LGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 141 vavv~LaGG--~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
+.+|+|.|| -|||.+ ++.||.++|++ |.+..++++..+.++.. +--+++..++..+....
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpia---G~pmI~Hhi~ac~qi~~------------l~eI~LvGFy~e~~f~~ 67 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIA---GVPMIHHHISACKQISG------------LAEILLVGFYEERVFTD 67 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCccccC---CcchhhhhHHHHhcccc------------hhheeEEecccchHHHH
Confidence 455666677 499975 69999999997 99999999998887643 44567778888888888
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
|+.+-. ..++.- . ++--+.+|.|+||-...+++ +..+..-..+|+.
T Consensus 68 fis~~~--------------~e~~~p--------v----rYL~E~~plGtaGgLyhFrd-----qIl~g~ps~vFvl--- 113 (407)
T KOG1460|consen 68 FISAIQ--------------QEFKVP--------V----RYLREDNPLGTAGGLYHFRD-----QILAGSPSAVFVL--- 113 (407)
T ss_pred HHHHHH--------------hhcccc--------h----hhhccCCCCCcccceeehhh-----HHhcCCCceEEEE---
Confidence 887631 111110 0 23445689999998877765 4555566788988
Q ss_pred CCccc--cccHHHHHHHHhcCCcceEeeee--CCCCcccccEEEEec-CCCceeEEEEecCCcchhHhhcCCCCCCCCCC
Q 012230 296 NGLLF--KAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (468)
Q Consensus 296 N~l~~--~~Dp~~lG~~~~~~~~~~~kvv~--r~~~e~~G~i~~~~~-~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (468)
|+++= .--+.++..|...+..+.+.++. |......|.++. . ..|+ | +-|.|.|.-.-
T Consensus 114 naDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~--dP~t~e--v--lHYveKPsTfv------------ 175 (407)
T KOG1460|consen 114 NADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVE--DPSTGE--V--LHYVEKPSTFV------------ 175 (407)
T ss_pred ecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeee--cCCcCc--e--EEeecCcchhh------------
Confidence 54431 12257888899999999888887 456667786653 2 2233 2 67877644311
Q ss_pred CCCCCCccceeeEEEehhhhH
Q 012230 371 TGYSPFPGNINQLILELGPYM 391 (468)
Q Consensus 371 ~g~~~f~gNinn~~~~l~~l~ 391 (468)
|. .-|+....|+-+.+.
T Consensus 176 ---Sd-~InCGvYlF~~eif~ 192 (407)
T KOG1460|consen 176 ---SD-IINCGVYLFTPEIFN 192 (407)
T ss_pred ---hc-ccceeEEEecHHHHH
Confidence 11 126677778766543
No 74
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.55 E-value=9.6e-05 Score=71.59 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=49.6
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHHh
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~~ 219 (468)
+++|+||||.|+|||.+.||.++|+. |+|++++.++++... ..+ .++|.|+......+.+++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l~---gkpll~~~i~~~~~~------------~~~~~ivVv~~~~~~~~~~~~~~~ 67 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDLV---GEPIFIHALRPFLAD------------NRCSKIIIVTQAQERKHVQDLMKQ 67 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEEC---CeEHHHHHHHHHHcC------------CCCCEEEEEeChhhHHHHHHHHHh
Confidence 68899999999999988899999996 999999999988653 123 45566665555556666654
No 75
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=97.50 E-value=0.0008 Score=64.01 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=36.2
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+++|+||||.|+|||...||.++|+. |+|++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i~---Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELG---GKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEEC---CeEHHHHHHHHHhc
Confidence 46899999999999876899999996 99999999999875
No 76
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.46 E-value=0.00016 Score=71.62 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=38.2
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l 184 (468)
++++|+||||.|||||.+.||..+++. |++++++.++.+...
T Consensus 24 ~i~aIILAAG~gsRmg~~~pKqll~l~---Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 24 SVSVILLAGGVGKRMGANMPKQYLPLL---GQPIALYSLYTFARM 65 (252)
T ss_pred ceEEEEEcccccccCCCCCCcceeEEC---CeEHHHHHHHHHHhC
Confidence 688999999999999988999999996 999999999888753
No 77
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.45 E-value=0.00092 Score=64.28 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.0
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+|+||||.||||+. +.||.++|+. |++++++.++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~---g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVD---GKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEEC---CEEHHHHHHHhhhc
Confidence 58999999999964 7899999996 99999999998875
No 78
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.37 E-value=0.0014 Score=62.46 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
.+..|+||||+++|| .+|.+++++ |++++++.++++..
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~~---g~~lie~v~~~L~~ 41 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPLN---GRPLIEHVIDRLRP 41 (192)
T ss_pred CceEEEecCCccccc---cccccceeC---CeEHHHHHHHHhcc
Confidence 578899999999999 799999996 99999999999975
No 79
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.26 E-value=0.00054 Score=63.49 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=33.0
Q ss_pred EEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+|+||||.|+||| .||.++|+. |+|++++.++++.+
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~~---g~pll~~~i~~l~~ 37 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPYK---GKTILEHVVDNALR 37 (188)
T ss_pred eEEECCCCcccCC--CCceecccC---CeeHHHHHHHHHHH
Confidence 6899999999998 599999996 99999999998875
No 80
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.22 E-value=0.0018 Score=60.56 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.7
Q ss_pred EEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++|+||||.|+|||. +|.++++. |+|++++.++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPLG---ETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--CceeceeC---CccHHHHHHHHHHh
Confidence 579999999999985 79999986 99999999987754
No 81
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.16 E-value=0.011 Score=63.76 Aligned_cols=194 Identities=23% Similarity=0.186 Sum_probs=112.5
Q ss_pred eEEEEecCCCCCcCCc----CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY----NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 141 vavv~LaGG~GTRLG~----~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
+-+|+||||.||||-. ..||.++|+. .++|+||..++++..+. ..-++ |.|+..-.+.+++.
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~--~~~sllq~t~~r~~~~~-----------~~~~i-ivt~~~~~~~v~~q 71 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLK--GDLTMLQTTICRLNGVE-----------CESPV-VICNEQHRFIVAEQ 71 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECC--CCCCHHHHHHHHHHhCC-----------CCCcE-EEeCHHHHHHHHHH
Confidence 5789999999999962 4699999984 35899999999987641 22244 56887777777777
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHC--C-ceEEEEEe
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--G-LKWVLFFQ 293 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~--G-~~yi~v~~ 293 (468)
+.+... ...+++++|. .--++|.. .+.++ .+.++ + -.-+.|..
T Consensus 72 l~~~~~---------------------~~~~ii~EP~---~rnTApai---alaa~-------~~~~~~~~~~~~v~vlP 117 (478)
T PRK15460 72 LRQLNK---------------------LTENIILEPA---GRNTAPAI---ALAAL-------AAKRHSPESDPLMLVLA 117 (478)
T ss_pred HHhcCC---------------------ccccEEecCC---CCChHHHH---HHHHH-------HHHHhcCCCCCeEEEec
Confidence 765221 1224555221 12233321 22222 12222 2 24667777
Q ss_pred cCCCccccccH-HHHHHH------HhcCCcceEeeeeCCCCcccccEEEEecCC-----CceeEEEEecCCcchhHhhcC
Q 012230 294 DTNGLLFKAIP-ASLGVS------ATKQYHVNSLAVPRKAKEAIGGITRLTHAD-----GRSMVINVEYNQLDPLLRATG 361 (468)
Q Consensus 294 vDN~l~~~~Dp-~~lG~~------~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~-----g~~~v~~VEYsel~~~l~~~~ 361 (468)
.|.. +.|. .|.... ++.+.-+++-+.+..|..-+|=|-.-...+ +-..| ..+.|-|+.-.++.
T Consensus 118 aDH~---I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V--~~F~EKPd~~tA~~ 192 (478)
T PRK15460 118 ADHV---IADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEV--AQFVEKPNLETAQA 192 (478)
T ss_pred cccc---cCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEe--eEEEeCCCHHHHHH
Confidence 7763 2232 232221 234666666677778998898776421111 21223 56666666543221
Q ss_pred -CCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhh
Q 012230 362 -FPDGDVNCETGYSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 362 -~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
..+|+ | +| |..++.|+.+.+.+.+++
T Consensus 193 yl~~G~------y-~W--NsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 193 YVASGE------Y-YW--NSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHcCC------E-EE--ecceeheeHHHHHHHHHH
Confidence 22222 3 56 999999999988777765
No 82
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.013 Score=59.49 Aligned_cols=197 Identities=22% Similarity=0.234 Sum_probs=117.0
Q ss_pred eEEEEecCCCCCcC----CcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 141 AAFVLVAGGLGERL----GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 141 vavv~LaGG~GTRL----G~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
+.-|+||||.|||| +...||..+.. ..++|+||..++|+..+.. .-.+++.|+..-...+++-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L--~~~~Sllq~T~~R~~~l~~-----------~~~~~vVtne~~~f~v~eq 68 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL--FGDLSLLQQTVKRLAFLGD-----------IEEPLVVTNEKYRFIVKEQ 68 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceee--CCCCcHHHHHHHHHhhcCC-----------ccCeEEEeCHHHHHHHHHH
Confidence 45689999999999 45899988865 3589999999999987632 2356777877777777776
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
|.+-+. + ...+ ++++|..+ -++|- |..+. +.-....|=.-+.|...|-
T Consensus 69 l~e~~~---~----------------~~~~-illEP~gR---nTApA----IA~aa-----~~~~~~~~d~~~lVlpsDH 116 (333)
T COG0836 69 LPEIDI---E----------------NAAG-IILEPEGR---NTAPA----IALAA-----LSATAEGGDALVLVLPSDH 116 (333)
T ss_pred Hhhhhh---c----------------cccc-eEeccCCC---CcHHH----HHHHH-----HHHHHhCCCcEEEEecCcc
Confidence 665211 0 1123 55533322 23332 22221 1122233423456665555
Q ss_pred CccccccH-HHHHHH------HhcCCcceEeeeeCCCCcccccEEEEec-CC-CceeEEEEecCCcchhHhhcC-CCCCC
Q 012230 297 GLLFKAIP-ASLGVS------ATKQYHVNSLAVPRKAKEAIGGITRLTH-AD-GRSMVINVEYNQLDPLLRATG-FPDGD 366 (468)
Q Consensus 297 ~l~~~~Dp-~~lG~~------~~~~~~~~~kvv~r~~~e~~G~i~~~~~-~~-g~~~v~~VEYsel~~~l~~~~-~~~g~ 366 (468)
. +.|. .|.-.. ++++.-+++-.++..|..-+|=|-.-.. .+ |-+.| -++-|-|++..++. ...|
T Consensus 117 ~---I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V--~~FvEKPd~etA~~yv~sG- 190 (333)
T COG0836 117 V---IADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKV--DRFVEKPDLETAKKYVESG- 190 (333)
T ss_pred e---eccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEe--eeeeeCCCHHHHHHHHHcC-
Confidence 3 3343 443221 2456777777788788888887754211 11 33344 66777776654332 2222
Q ss_pred CCCCCCCCCCccceeeEEEehhhhHHHHhh
Q 012230 367 VNCETGYSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 367 l~~~~g~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
+| +| |...+.|+.+.+.+.+++
T Consensus 191 -----~y-~W--NSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 191 -----EY-LW--NSGMFLFRASVFLEELKK 212 (333)
T ss_pred -----ce-Ee--eccceEEEHHHHHHHHHh
Confidence 24 56 999999999987777764
No 83
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.15 E-value=0.00041 Score=66.26 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=35.5
Q ss_pred EEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++|+||||.|||||.+.||.++|+. |+|++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l~---gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLELG---GRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEEC---CeEHHHHHHHHHhc
Confidence 4689999999999988899999986 99999999999875
No 84
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.07 E-value=0.0037 Score=65.26 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=36.3
Q ss_pred hceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 139 ~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
.++++|+||||+||||| ..||.++|+. |+|++++.++.+..
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i~---Gkpll~~~i~~l~~ 44 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILLG---GKPLIERVVDRLRP 44 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEEC---CeeHHHHHHHHHHh
Confidence 36889999999999996 3799999986 99999999998863
No 85
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=97.07 E-value=0.00078 Score=64.92 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=37.6
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|||||...||.++|+. |+|++++.++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~~---g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPLG---GKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEEC---CEEHHHHHHHHHHc
Confidence 578899999999999988899999996 99999999999875
No 86
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.02 E-value=0.00055 Score=64.97 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=35.4
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCC-cchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTG-TCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~g-ks~l~l~~~~i~~ 183 (468)
++++|+||||+++||| .+|.++|+. | +|++++.++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~ll~~~---g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKALLPFG---SYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCceEEEeC---CCCcHHHHHHHHHHH
Confidence 7899999999999998 589999985 8 9999999999864
No 87
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.01 E-value=0.0013 Score=61.34 Aligned_cols=61 Identities=28% Similarity=0.397 Sum_probs=48.6
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+.+|++|||+|||||. .-|.++++. ||+++.+.++.++.. . =-+++-+|.+| ..|++|+++
T Consensus 1 m~~iiMAGGrGtRmg~-~EKPlleV~---GkpLI~~v~~al~~~---~----------d~i~v~isp~t-p~t~~~~~~ 61 (177)
T COG2266 1 MMAIIMAGGRGTRMGR-PEKPLLEVC---GKPLIDRVLEALRKI---V----------DEIIVAISPHT-PKTKEYLES 61 (177)
T ss_pred CceEEecCCcccccCC-CcCcchhhC---CccHHHHHHHHHHhh---c----------CcEEEEeCCCC-HhHHHHHHh
Confidence 3579999999999995 668899885 999999999988762 1 13567777766 568899886
No 88
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=96.96 E-value=0.00059 Score=63.09 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=34.0
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+++|+||||.|+|||. ||.++|+. |+|++++.++++..
T Consensus 1 ~~~iILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~ 38 (181)
T cd02503 1 ITGVILAGGKSRRMGG--DKALLELG---GKPLLEHVLERLKP 38 (181)
T ss_pred CcEEEECCCccccCCC--CceeeEEC---CEEHHHHHHHHHHh
Confidence 3679999999999985 99999996 99999999998875
No 89
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=96.86 E-value=0.0013 Score=69.00 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=37.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++++|+||||.|||||...||..+|+. |+|++++.++.+..
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l~---GkPll~~tl~~l~~ 45 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRIG---GKPLWLHVLENLSS 45 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEEC---CeeHHHHHHHHHhc
Confidence 678999999999999988899999996 99999999999875
No 90
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.83 E-value=0.00095 Score=61.99 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=33.9
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~ 182 (468)
+++|+||||.|||||- .||.++|+. |+|++++.++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i~---g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVELG---GKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEEC---CEEHHHHHHHHHH
Confidence 4689999999999983 499999996 9999999999985
No 91
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.79 E-value=0.0011 Score=62.36 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~ 182 (468)
++.+|+||||.|+||| ..||.++|+. |+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~~---g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQELN---GKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEEC---CEEHHHHHHHHHh
Confidence 5789999999999996 3699999986 9999999999886
No 92
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.77 E-value=0.0017 Score=63.47 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=52.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||+|.|||||.+.||..+++. |+++|++.++.++... .+ .++|.++..-++...++..
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq~l~l~---g~pll~~tl~~f~~~~------------~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQYLELG---GRPLLEHTLEAFLESP------------AIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred eEEEEEEcCccccccCCCCCceEEEEC---CEEehHHHHHHHHhCc------------CCCeEEEEEChhhhHHHHHhhh
Confidence 578999999999999999999999986 9999999999998742 23 4566666667777777665
No 93
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.74 E-value=0.0011 Score=62.98 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=35.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|+|||. +|.++|+. |+|++++.++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPWQ---GVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEEC---CEeHHHHHHHHHHh
Confidence 67899999999999984 79999996 99999999999864
No 94
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=96.65 E-value=0.025 Score=55.41 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=75.0
Q ss_pred EEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHHhCC
Q 012230 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLESNS 221 (468)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~~~~ 221 (468)
+|++|+|.||||+ +|.++|+. |+|++++.++++... .+- ++|-|. ++.+.+.+++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l~---GkPli~~~le~~~~~-------------~~d~VvVvt~---~~~i~~~~~~-- 57 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDIF---GKPMIVHVAENANES-------------GADRCIVATD---DESVAQTCQK-- 57 (238)
T ss_pred EEEecCCCCCCCC---CCeecccC---CcCHHHHHHHHHHhC-------------CCCeEEEEeC---HHHHHHHHHH--
Confidence 6899999999994 89999996 999999999997642 122 344443 3556666654
Q ss_pred CCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcccc
Q 012230 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (468)
Q Consensus 222 ~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~ 301 (468)
||.. .++ .. ...+.|...+..++.. +....-+++.+.+-|.++...
T Consensus 58 -~g~~---------------------~v~--~~----~~~~~Gt~r~~~~~~~------l~~~~~d~Vli~~gD~Pli~~ 103 (238)
T TIGR00466 58 -FGIE---------------------VCM--TS----KHHNSGTERLAEVVEK------LALKDDERIVNLQGDEPFIPK 103 (238)
T ss_pred -cCCE---------------------EEE--eC----CCCCChhHHHHHHHHH------hCCCCCCEEEEEcCCcCcCCH
Confidence 2321 122 00 1135566656655432 110134678888888887643
Q ss_pred ccH-HHHHHHHhcCCcceEeeeeCC
Q 012230 302 AIP-ASLGVSATKQYHVNSLAVPRK 325 (468)
Q Consensus 302 ~Dp-~~lG~~~~~~~~~~~kvv~r~ 325 (468)
-+- .++-.+...+++++.-+++..
T Consensus 104 ~~I~~li~~~~~~~~~~a~~~~~~~ 128 (238)
T TIGR00466 104 EIIRQVADNLATKNVPMAALAVKIH 128 (238)
T ss_pred HHHHHHHHHHhcCCCCEEEEeeecC
Confidence 221 233333334577777777743
No 95
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.44 E-value=0.0022 Score=66.89 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++..|+||||+|+||| .+|.++|+. |+|++++.++.+..
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~~---Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSYH---ESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEEC---CccHHHHHHHHHHh
Confidence 5689999999999998 499999986 99999999988864
No 96
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.34 E-value=0.0033 Score=65.20 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=34.9
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
.+..|+||||+|+||| .+|.++|.. |+|++++.++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~~---GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNYQ---GQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcccceeC---CccHHHHHHHHHHh
Confidence 5788999999999998 699999986 99999999988764
No 97
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=96.29 E-value=0.061 Score=51.94 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=42.6
Q ss_pred EEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccc-hHHHHHHHHh
Q 012230 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDT-HSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t-~~~t~~~~~~ 219 (468)
+|+||||.++||| +|.++|+. |+|++++.++.+.... .+. ++|-|+..- ++.+.+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l~---Gkpli~~~i~~l~~~~------------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPLG---GKPLLEHLLDRLKRSK------------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCcccccC---CccHHHHHHHHHHhCC------------CCCeEEEECCCCcccHHHHHHHHH
Confidence 5899999999995 59999986 9999999999887521 133 455554433 2667776653
No 98
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=96.23 E-value=0.021 Score=61.02 Aligned_cols=263 Identities=17% Similarity=0.174 Sum_probs=141.9
Q ss_pred CCCcccCCccC---CCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh----C-CCCCCCCC
Q 012230 157 NGIKVALPAET---TTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES----N-SYFGMKPT 228 (468)
Q Consensus 157 ~~pK~~lP~~~---~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~----~-~~FGl~~~ 228 (468)
..||+++|... ..-.+|-++++|-.+... .+ ..+.+=+-.|..-.+...+.+++ + ..||.. =
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~-------~~--g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~-f 234 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAK-------SN--GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVK-F 234 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHh-------cC--CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCce-E
Confidence 68999999742 234556666666554322 11 12333334444433333333332 1 224442 3
Q ss_pred cEEEEecCc---eeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccc--c
Q 012230 229 QVKLLKQEK---VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKA--I 303 (468)
Q Consensus 229 ~v~~f~Q~~---~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~--D 303 (468)
+|.|=.|.. -.++ +.++.+.- .+.+++..-|.|||.+...|.+ ..-..|||=+|||+..... +
T Consensus 235 ~IsfS~Qk~sTDTIAv-~~dN~pFR--~~dG~LlFRPgGHGALieNLN~---------ldaDiIFIKNIDNVvpd~~k~~ 302 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAV-DPDNTPFR--NEDGSLLFRPGGHGALIENLND---------LDADIIFIKNIDNVVPDRLKEE 302 (513)
T ss_pred EEEecccCCCCCeeEE-CCCCCccC--CCCCCEEeCCCcchHHHhhhcc---------ccCCEEEEeCccccCCcccchh
Confidence 566666632 2334 46788887 6677899999999998887743 3346889999999864211 1
Q ss_pred -----HHHHHHHHh-------------c-----------------CCcc------------------------eEeeee-
Q 012230 304 -----PASLGVSAT-------------K-----------------QYHV------------------------NSLAVP- 323 (468)
Q Consensus 304 -----p~~lG~~~~-------------~-----------------~~~~------------------------~~kvv~- 323 (468)
-++-|..++ . ..-+ =+-||-
T Consensus 303 t~~yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGM 382 (513)
T PF14134_consen 303 TVKYKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGM 382 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeec
Confidence 011222210 0 0000 013443
Q ss_pred -CCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccc
Q 012230 324 -RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIK 402 (468)
Q Consensus 324 -r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp 402 (468)
|+.+|+-||--.+.+.||...+-.||=++|...-..+.. -+.+.|.| |---+.+.++-|+ ...-.|+
T Consensus 383 VkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~~---if~~~THF-----NPVDLVCgvkdyk----G~kFdL~ 450 (513)
T PF14134_consen 383 VKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQKE---IFKNSTHF-----NPVDLVCGVKDYK----GEKFDLP 450 (513)
T ss_pred cccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHHH---HHHcCCCC-----CccceEeeccCCC----CCcCCch
Confidence 678899999777878899865555999988554433321 12222323 5555666665432 1122456
Q ss_pred cccCCcccC-CCCCcccCchh-Hhh--hh-ccccccCCCCCceeEEEecCCcceecccCCCC
Q 012230 403 EFVNPKYKD-ASKTSFKSSTR-LEC--MM-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 403 ~~vnpk~~d-~~~~~~~~~~k-lE~--~i-~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
.+|+|+.-= ..++.--+++| ||. .+ +.|... +..|+|||= ..|.|||.-.+
T Consensus 451 ~fvD~~tgFIs~KSk~Gk~LKAlELPGLWNGaMa~W-----nTvFVEVPl-~TFNPVKTVnD 506 (513)
T PF14134_consen 451 DFVDPNTGFISEKSKNGKELKALELPGLWNGAMADW-----NTVFVEVPL-ITFNPVKTVND 506 (513)
T ss_pred hccCCCCceeeecCCCCccchhhccCCcccchhcCC-----ceEEEEecc-ccCCCccchhh
Confidence 666664110 00110112222 443 22 223222 789999999 99999998654
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.024 Score=53.71 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=49.7
Q ss_pred EEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH
Q 012230 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 142 avv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~ 218 (468)
-+|+||.|+|||+. .+.||+++-+. |+++++.++++|+. ..|--++...++.+|+. +||+
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV~---g~plIErqI~~L~e-------------~gI~dI~IVvGYlkE~F-eYLk 64 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKVN---GEPLIERQIEQLRE-------------AGIDDITIVVGYLKEQF-EYLK 64 (231)
T ss_pred ceEEEecccccccccccccCChHHHHhc---CcccHHHHHHHHHH-------------CCCceEEEEeeehHHHH-HHHH
Confidence 36899999999986 58999999985 99999999999975 35776777778888865 4665
Q ss_pred h
Q 012230 219 S 219 (468)
Q Consensus 219 ~ 219 (468)
+
T Consensus 65 d 65 (231)
T COG4750 65 D 65 (231)
T ss_pred H
Confidence 4
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=94.81 E-value=0.53 Score=45.59 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=80.2
Q ss_pred EEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCC
Q 012230 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (468)
Q Consensus 143 vv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~ 222 (468)
+|++|.|.++|++ .|...|++ |++++++.++.+.... .+-.++.+++ ++++.++.+++
T Consensus 2 aiIpArG~Skr~~---~Knl~~l~---GkpLi~~ti~~a~~s~------------~~d~IvVstd--~~~i~~~a~~~-- 59 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPFC---GKPMIAYSIEAALNSG------------LFDKVVVSTD--DEEIAEVAKSY-- 59 (222)
T ss_pred EEEccCCCCCCCC---CccchhcC---CcCHHHHHHHHHHhCC------------CCCEEEEeCC--CHHHHHHHHHc--
Confidence 5888999999995 58888886 9999999999987631 2344444444 35677777642
Q ss_pred CCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHH-CCceEEEEEecCCCcccc
Q 012230 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTNGLLFK 301 (468)
Q Consensus 223 FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~-~G~~yi~v~~vDN~l~~~ 301 (468)
|.. +|.. . +..+...-.|.+++.... ++.+.. ...+++.+.+.|.++...
T Consensus 60 -g~~-----------v~~~-----------r-~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~~ 110 (222)
T TIGR03584 60 -GAS-----------VPFL-----------R-PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQA 110 (222)
T ss_pred -CCE-----------eEEe-----------C-hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCCH
Confidence 321 1110 0 111212223344444433 233432 336889999999998866
Q ss_pred ccH-HHHHHHHhcCCcceEeeeeC
Q 012230 302 AIP-ASLGVSATKQYHVNSLAVPR 324 (468)
Q Consensus 302 ~Dp-~~lG~~~~~~~~~~~kvv~r 324 (468)
.|- ..+....+.++|..+-|++.
T Consensus 111 ~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 111 KILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecc
Confidence 543 34444555679998888884
No 101
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=92.76 E-value=0.18 Score=50.41 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=85.7
Q ss_pred EEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 143 vv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
+|+.|.|+|||+= -..||-|||+- +|+..|+.++-... ..|--+++.++.+...+..||..
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIv---dKP~IqYiVeEa~~-------------aGIe~i~iVTgr~K~~IeDhFD~ 70 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVA-------------AGIEEILIVTGRGKRAIEDHFDT 70 (291)
T ss_pred EEEEccCcccccccccccCchhhcccc---CchhHHHHHHHHHH-------------cCCCEEEEEecCCcchHHHhCcC
Confidence 5789999999983 26889999995 89999999998765 24665555555555577777743
Q ss_pred CCCCCCCC-----CcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCce-EEEEEe
Q 012230 220 NSYFGMKP-----TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQ 293 (468)
Q Consensus 220 ~~~FGl~~-----~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~-yi~v~~ 293 (468)
. |-|.. .+... =..+..+ ...+.+.+ --...|.|-|....... .|. |-+ ++.+..
T Consensus 71 s--~ELE~~L~~~~K~~~--L~~v~~i-~~~~~i~~------vRQ~e~~GLGhAVl~A~------~~v--g~EpFaVlL~ 131 (291)
T COG1210 71 S--YELENTLEKRGKREL--LEEVRSI-PPLVTISF------VRQKEPLGLGHAVLCAK------PFV--GDEPFAVLLP 131 (291)
T ss_pred c--HHHHHHHHHhCHHHH--HHHHHhc-ccCceEEE------EecCCCCcchhHHHhhh------hhc--CCCceEEEeC
Confidence 1 11100 00000 0001111 11222322 22357888888776654 354 435 555544
Q ss_pred cCCCcccc-ccHHHHHHHHh-cCCcceEeeeeCCCCcccccEE
Q 012230 294 DTNGLLFK-AIPASLGVSAT-KQYHVNSLAVPRKAKEAIGGIT 334 (468)
Q Consensus 294 vDN~l~~~-~Dp~~lG~~~~-~~~~~~~kvv~r~~~e~~G~i~ 334 (468)
+|=+.... +--.++-...+ .+.-++.+-|+.....++|++.
T Consensus 132 Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~ 174 (291)
T COG1210 132 DDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVID 174 (291)
T ss_pred CeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEe
Confidence 44322211 11122222223 3345566666666778899886
No 102
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=92.61 E-value=0.14 Score=48.96 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=36.0
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+++.|+||-|.||||| .+|.++|.. |++++.+.+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~KlLap~~---g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKLLAPLD---GKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--CcceecccC---CCcHHHHHHHHHHh
Confidence 6899999999999999 799999996 99999999998875
No 103
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=82.88 E-value=1.1 Score=46.94 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
+...|++|||-||||- ...||.+||++ +++.+.+-+..+.+.. ---+++.+-..-.+.+.+.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPIg---n~PMi~YpL~~L~~~g------------fteiiVv~~e~e~~~i~~a 73 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPIG---NKPMILYPLNSLEQAG------------FTEIIVVVNEDEKLDIESA 73 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhcccC---CcceeeeehhHHHhcC------------CeEEEEEecHHHHHHHHHH
Confidence 5667899999999984 48999999997 9999999998887632 1224455555677788888
Q ss_pred HHhC
Q 012230 217 LESN 220 (468)
Q Consensus 217 ~~~~ 220 (468)
+.++
T Consensus 74 l~~~ 77 (433)
T KOG1462|consen 74 LGSN 77 (433)
T ss_pred HhcC
Confidence 8763
No 104
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=78.68 E-value=4 Score=39.87 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=47.2
Q ss_pred ceEEEEecCCCCCcCCcCCC--cccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCc-cchHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD-DTHSRTQEL 216 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~p--K~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~-~t~~~t~~~ 216 (468)
++++|+=| |||++.- |.++|+. +.++++++++++++-..+ =-++|-||. .+++.+.++
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL~---~~pmI~~~lervrks~~~-----------d~ivvATS~~~~d~~l~~~ 63 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPLG---GEPMIEYQLERVRKSKDL-----------DKIVVATSDKEEDDALEEV 63 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhcC---CCchHHHHHHHHhccccc-----------cceEEEecCCcchhHHHHH
Confidence 45666666 7776543 6799996 999999999999875432 347888988 566677788
Q ss_pred HHhCCC
Q 012230 217 LESNSY 222 (468)
Q Consensus 217 ~~~~~~ 222 (468)
..++.+
T Consensus 64 ~~~~G~ 69 (241)
T COG1861 64 CRSHGF 69 (241)
T ss_pred HHHcCe
Confidence 877653
No 105
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=42.84 E-value=78 Score=29.62 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=25.6
Q ss_pred EEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHH
Q 012230 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (468)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l 184 (468)
++|+.|-|-.+|| .-|.+.|+. |+|++++.++++++.
T Consensus 1 iaiIpAR~gS~rl---p~Knl~~l~---gkpLi~~~i~~a~~s 37 (217)
T PF02348_consen 1 IAIIPARGGSKRL---PGKNLKPLG---GKPLIEYVIERAKQS 37 (217)
T ss_dssp EEEEEE-SSSSSS---TTGGGSEET---TEEHHHHHHHHHHHT
T ss_pred CEEEecCCCCCCC---CcchhhHhC---CccHHHHHHHHHHhC
Confidence 3567774444444 126678875 999999999999864
No 106
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=41.54 E-value=91 Score=30.80 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=57.7
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhh--ccCC------cccc-CEEEEcCccch
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRL--AEGK------CQEI-PFAIMTSDDTH 210 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~--~~g~------~~~i-p~~IMtS~~t~ 210 (468)
+..+||-|=-..|||- -|.+--+. |+|+.++.++|...- .+..- .+.+ .... -.++|||..-.
T Consensus 3 ~~~viIPAR~~STRLp---gKPLadI~---GkpmI~rV~e~a~~s--~~~rvvVATDde~I~~av~~~G~~avmT~~~h~ 74 (247)
T COG1212 3 KFVVIIPARLASTRLP---GKPLADIG---GKPMIVRVAERALKS--GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQ 74 (247)
T ss_pred ceEEEEecchhcccCC---CCchhhhC---CchHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCC
Confidence 4678888877777772 24444454 999999999988743 11000 0000 0011 46899998644
Q ss_pred ---HHHHHHHHhCCCCCCCCCcEEEEecCceeee
Q 012230 211 ---SRTQELLESNSYFGMKPTQVKLLKQEKVACL 241 (468)
Q Consensus 211 ---~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~ 241 (468)
+.+.+.+++. |++.+.+.+=.|+-.|++
T Consensus 75 SGTdR~~Ev~~~l---~~~~~~iIVNvQGDeP~i 105 (247)
T COG1212 75 SGTDRLAEVVEKL---GLPDDEIIVNVQGDEPFI 105 (247)
T ss_pred CccHHHHHHHHhc---CCCcceEEEEccCCCCCC
Confidence 4555556554 456788899899999987
No 107
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=40.62 E-value=41 Score=25.60 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=33.3
Q ss_pred hhHHHHHHhhccccccccCCchhhhhccCCChhHHHHHHHHHH
Q 012230 6 DSAAEQLSKLGIDGAFADSAPNLKKNLHLLSSEQVELAKMLME 48 (468)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 48 (468)
-.+++-|.+.|||=-|.|+ ++|.++.....-+.+.+++.|.+
T Consensus 13 p~~a~vf~~~gIDfCCgG~-~~L~eA~~~~~ld~~~vl~~L~~ 54 (56)
T PF04405_consen 13 PRAARVFRKYGIDFCCGGN-RSLEEACEEKGLDPEEVLEELNA 54 (56)
T ss_pred hHHHHHHHHcCCcccCCCC-chHHHHHHHcCCCHHHHHHHHHH
Confidence 3578999999999999988 67777777776777777777765
No 108
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.78 E-value=2.6e+02 Score=26.75 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=60.0
Q ss_pred CcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCcc-chHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCce
Q 012230 170 GTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD-THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARL 248 (468)
Q Consensus 170 gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~-t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki 248 (468)
+-+..+-.++.|.+|..-+.+ .+||++--.-.. -.++-+..|++----|++.. -.+|..+-.+
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~------~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~---p~~~~vv~~l------- 112 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQ------AGIPVVYTAQPGEQSPEDRALLKDFWGPGLTAS---PEQQKVVDEL------- 112 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHH------cCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCC---hhhhhhHHhc-------
Confidence 445678889999999887764 479988776665 45556666654322344321 0111111111
Q ss_pred eccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEe
Q 012230 249 AMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (468)
Q Consensus 249 ~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~ 293 (468)
-|+....+..+= -|.|+++|.+++.|++.|+..+.|..
T Consensus 113 --~P~~~D~vL~kw-----rYsAF~~s~Llq~lr~~grdQLIItG 150 (218)
T COG1535 113 --APGADDTVLTKW-----RYSAFHRSPLLQMLREKGRDQLIITG 150 (218)
T ss_pred --CCCCCceEEeee-----ehhhhhcChHHHHHHHcCCCcEEEee
Confidence 111111111111 28999999999999999999887753
No 109
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=31.01 E-value=1.1e+02 Score=26.17 Aligned_cols=29 Identities=24% Similarity=0.641 Sum_probs=21.6
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHhcCC
Q 012230 51 QSHLFEKWAAPGVDDNEKRAFFDQVAKLNS 80 (468)
Q Consensus 51 Q~Hll~~~~~~~l~~~e~~~L~~qL~~id~ 80 (468)
|-.||+-|-. +=++++|+.|+++|+.+|.
T Consensus 59 qlkLf~qWf~-~W~~~ern~fl~~Lee~D~ 87 (98)
T PF14969_consen 59 QLKLFRQWFP-KWSEEERNKFLEQLEEIDP 87 (98)
T ss_pred hHHHHHHHHh-hccHHHHHHHHHHHHHhCh
Confidence 4455665543 2468999999999999995
No 110
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=26.47 E-value=1.5e+02 Score=23.47 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=32.5
Q ss_pred hhhhccCCChhH-HHHHHHHHHCCCccccc--------cccCCCCCHHHHHHHHHHHHh
Q 012230 28 LKKNLHLLSSEQ-VELAKMLMEMGQSHLFE--------KWAAPGVDDNEKRAFFDQVAK 77 (468)
Q Consensus 28 ~~~~~~~l~~~~-~~l~~~L~~~gQ~Hll~--------~~~~~~l~~~e~~~L~~qL~~ 77 (468)
|..+++.-|.++ .+.+.--...|+++.|- +|.. .+++||.++++.|.+
T Consensus 6 i~~nv~~~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~--~~~~ek~~m~~~l~~ 62 (65)
T TIGR03092 6 ILANISNNTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKH--ANEQEKDEMLETLEQ 62 (65)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhccchhcCCccHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 445555555544 33444445667777653 7888 889999999999864
No 111
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=22.77 E-value=48 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.0
Q ss_pred CCCCCCC---CCcEEEE
Q 012230 220 NSYFGMK---PTQVKLL 233 (468)
Q Consensus 220 ~~~FGl~---~~~v~~f 233 (468)
|+|||++ .+||+||
T Consensus 4 n~~FGie~~~sdqIWFY 20 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFY 20 (40)
T ss_pred hhhcCccccccccEEEe
Confidence 6789997 5688887
No 112
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=21.40 E-value=3.4e+02 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.5
Q ss_pred ccCEEEEcCccchHHHHHHHHhCC
Q 012230 198 EIPFAIMTSDDTHSRTQELLESNS 221 (468)
Q Consensus 198 ~ip~~IMtS~~t~~~t~~~~~~~~ 221 (468)
...|+|-||..|-+++.+.|++.-
T Consensus 182 ~~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 182 GGSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 478999999999999999999853
Done!