Query 012230
Match_columns 468
No_of_seqs 190 out of 747
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 1.8E-97 6E-102 795.9 32.9 407 36-460 6-439 (630)
2 2yqc_A UDP-N-acetylglucosamine 100.0 1.2E-84 4.1E-89 690.9 30.2 405 37-466 4-432 (486)
3 1jv1_A Glcnac1P uridyltransfer 100.0 6.5E-81 2.2E-85 664.7 33.3 405 38-466 2-419 (505)
4 3oc9_A UDP-N-acetylglucosamine 100.0 1.4E-77 4.8E-82 619.7 25.9 318 128-466 21-348 (405)
5 3r3i_A UTP--glucose-1-phosphat 100.0 6.3E-78 2.2E-82 635.9 18.7 357 50-459 52-420 (528)
6 3gue_A UTP-glucose-1-phosphate 100.0 2.8E-77 9.5E-82 627.0 22.6 339 88-459 31-380 (484)
7 2oeg_A UTP-glucose-1-phosphate 100.0 2.5E-67 8.5E-72 558.1 24.5 338 87-459 30-384 (505)
8 2icy_A Probable UTP-glucose-1- 100.0 1.9E-62 6.6E-67 518.0 26.7 353 67-458 7-363 (469)
9 2i5k_A UTP--glucose-1-phosphat 100.0 1.3E-61 4.4E-66 514.3 23.6 358 54-458 20-380 (488)
10 3st8_A Bifunctional protein GL 99.1 3.5E-10 1.2E-14 120.0 15.4 191 140-396 12-204 (501)
11 3oam_A 3-deoxy-manno-octuloson 98.7 1.1E-07 3.9E-12 91.8 14.2 185 140-395 2-197 (252)
12 4ecm_A Glucose-1-phosphate thy 98.7 3E-07 1E-11 89.5 15.0 179 140-395 24-207 (269)
13 3k8d_A 3-deoxy-manno-octuloson 98.5 1E-06 3.5E-11 86.2 13.5 190 140-395 18-213 (264)
14 3brk_X Glucose-1-phosphate ade 98.5 1.5E-06 5.2E-11 89.8 14.9 202 138-395 10-221 (420)
15 1yp2_A Glucose-1-phosphate ade 98.5 1.9E-06 6.6E-11 89.6 15.4 214 140-396 20-246 (451)
16 3tqd_A 3-deoxy-manno-octuloson 98.4 1.4E-06 4.7E-11 84.9 12.4 185 140-394 9-205 (256)
17 1fxo_A Glucose-1-phosphate thy 98.4 1.8E-06 6.3E-11 85.4 12.8 149 140-342 2-155 (293)
18 2qh5_A PMI, ALGA, mannose-6-ph 98.4 1.2E-06 4.3E-11 87.0 11.1 192 140-395 4-203 (308)
19 1lvw_A Glucose-1-phosphate thy 98.3 5.9E-06 2E-10 81.9 14.7 148 141-342 4-156 (295)
20 3juk_A UDP-glucose pyrophospho 98.3 3.3E-06 1.1E-10 82.3 12.3 64 141-220 3-69 (281)
21 1mc3_A Glucose-1-phosphate thy 98.3 3.8E-06 1.3E-10 83.3 12.7 177 141-390 4-184 (296)
22 1h7e_A 3-deoxy-manno-octuloson 98.3 6.4E-06 2.2E-10 78.2 12.7 126 140-324 2-129 (245)
23 2y6p_A 3-deoxy-manno-octuloson 98.3 6.9E-06 2.4E-10 77.3 12.3 113 140-314 2-115 (234)
24 3pnn_A Conserved domain protei 98.2 8.6E-06 2.9E-10 80.8 12.8 164 140-343 5-179 (303)
25 1hm9_A GLMU, UDP-N-acetylgluco 98.2 1.2E-05 4E-10 83.8 14.1 181 142-395 13-194 (468)
26 2v0h_A Bifunctional protein GL 98.2 2.2E-05 7.4E-10 81.4 14.9 179 140-395 5-185 (456)
27 2x65_A Mannose-1-phosphate gua 98.2 7.2E-06 2.5E-10 82.8 10.6 192 141-396 2-206 (336)
28 1ezi_A CMP-N-acetylneuraminic 98.1 1.4E-05 4.9E-10 75.1 11.6 59 140-219 4-63 (228)
29 4fce_A Bifunctional protein GL 98.1 2.8E-05 9.6E-10 80.6 14.2 180 140-396 8-189 (459)
30 3f1c_A Putative 2-C-methyl-D-e 98.0 2.8E-05 9.7E-10 74.5 11.3 127 140-316 3-136 (246)
31 1qwj_A Cytidine monophospho-N- 98.0 6.3E-05 2.2E-09 71.1 12.7 129 140-322 3-132 (229)
32 2e3d_A UTP--glucose-1-phosphat 98.0 3E-05 1E-09 76.3 10.6 63 140-219 8-74 (302)
33 1vic_A 3-deoxy-manno-octuloson 97.9 4.2E-05 1.4E-09 73.7 10.9 128 140-324 2-130 (262)
34 2vsh_A TARI, 2-C-methyl-D-eryt 97.9 5.5E-05 1.9E-09 71.0 10.8 64 141-219 3-68 (236)
35 2pa4_A UTP-glucose-1-phosphate 97.9 1E-05 3.5E-10 80.9 5.9 62 141-218 13-77 (323)
36 4fcu_A 3-deoxy-manno-octuloson 97.8 7.2E-05 2.5E-09 72.5 10.7 183 141-394 2-197 (253)
37 2ux8_A Glucose-1-phosphate uri 97.8 4.8E-05 1.6E-09 74.8 9.2 64 140-219 14-80 (297)
38 1tzf_A Glucose-1-phosphate cyt 97.8 2.3E-05 7.9E-10 74.9 6.4 157 141-335 3-168 (259)
39 2wee_A MOBA-related protein; u 97.7 3.2E-05 1.1E-09 70.5 5.7 60 140-218 5-65 (197)
40 2cu2_A Putative mannose-1-phos 97.7 0.0001 3.5E-09 74.3 9.7 191 141-395 3-202 (337)
41 2yc3_A 2-C-methyl-D-erythritol 97.7 2.8E-05 9.6E-10 72.9 5.1 41 140-183 4-44 (228)
42 2waw_A MOBA relate protein; un 97.7 3.2E-05 1.1E-09 70.5 5.3 60 140-218 5-65 (199)
43 2xwl_A 2-C-methyl-D-erythritol 97.7 5.3E-05 1.8E-09 70.6 6.5 42 140-184 2-43 (223)
44 1vgw_A 4-diphosphocytidyl-2C-m 97.7 2.8E-05 9.7E-10 72.9 4.6 41 140-183 6-46 (231)
45 3q80_A 2-C-methyl-D-erythritol 97.6 7.3E-05 2.5E-09 71.5 7.0 64 140-218 7-71 (231)
46 3rsb_A Adenosylcobinamide-phos 97.6 4.6E-05 1.6E-09 69.8 5.1 61 141-219 1-62 (196)
47 1vpa_A 2-C-methyl-D-erythritol 97.5 9.9E-05 3.4E-09 69.4 6.0 41 140-183 13-53 (234)
48 1jyk_A LICC protein, CTP:phosp 97.5 8.6E-05 2.9E-09 71.5 4.9 41 140-183 25-68 (254)
49 4evw_A Nucleoside-diphosphate- 97.4 2.4E-05 8.2E-10 75.7 0.7 38 143-183 2-42 (255)
50 1i52_A 4-diphosphocytidyl-2-C- 97.4 8.3E-05 2.8E-09 70.2 3.9 41 140-183 7-47 (236)
51 3d5n_A Q97W15_sulso; NESG, SSR 97.3 0.00016 5.4E-09 66.9 4.3 39 140-183 2-40 (197)
52 1e5k_A Molybdopterin-guanine d 97.2 0.00018 6.3E-09 66.7 4.3 40 140-183 6-45 (201)
53 2px7_A 2-C-methyl-D-erythritol 97.2 0.00017 5.8E-09 68.5 3.8 37 140-180 25-61 (236)
54 2xme_A CTP-inositol-1-phosphat 97.2 0.00022 7.4E-09 67.2 4.4 62 138-218 16-77 (232)
55 3ngw_A Molybdopterin-guanine d 97.1 0.00031 1.1E-08 65.9 3.7 37 141-182 1-37 (208)
56 1w55_A ISPD/ISPF bifunctional 96.9 0.00046 1.6E-08 70.6 3.6 41 140-183 3-43 (371)
57 2e8b_A Probable molybdopterin- 96.9 0.00019 6.3E-09 66.6 0.5 39 140-183 14-52 (201)
58 2ggo_A 401AA long hypothetical 96.7 0.0017 5.7E-08 66.0 5.8 58 142-219 2-63 (401)
59 2dpw_A Hypothetical protein TT 96.1 0.0036 1.2E-07 59.0 4.0 40 140-183 2-44 (232)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=1.8e-97 Score=795.93 Aligned_cols=407 Identities=39% Similarity=0.675 Sum_probs=366.1
Q ss_pred ChhHHHHHHHHHH--CCCccccccccCCCCC--HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhhccCCCCCCCCCC
Q 012230 36 SSEQVELAKMLME--MGQSHLFEKWAAPGVD--DNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFT 111 (468)
Q Consensus 36 ~~~~~~l~~~L~~--~gQ~Hll~~~~~~~l~--~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~ 111 (468)
.++.++|+++|.+ +||+|||+||++. ++ ++||++|++||..||..|+++|..|++++++++ .+..+.++.+.++
T Consensus 6 ~~~~~~L~~~l~~~~~gQ~HLf~~w~~~-l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l-~~~~~~~~~~~~~ 83 (630)
T 3ogz_A 6 NSNLQALREELCTPGLDQGHLFEGWPET-VDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELL-ARESEEVDFAALE 83 (630)
T ss_dssp HHHHHHHHHHHTSTTTCCGGGGTTCCSS-GGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHH-HHHTSCCCCSEEE
T ss_pred hhhHHHHHHHhhhccCCchhhhhhcccc-cCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHh-hccccCCcccccc
Confidence 4567889999997 9999999999874 56 899999999999999999999999999999998 4445566677776
Q ss_pred C--CCCCCccccCCChhhhHHHHHhHHhhhceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhh
Q 012230 112 P--SVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 189 (468)
Q Consensus 112 ~--~vp~~~~~~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~ 189 (468)
| .+|.+..++.+++++.+|+++|+++|+|+|||+||||||||||+++||+++|+++.+++||||++++||+ ++++
T Consensus 84 p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g 160 (630)
T 3ogz_A 84 MPPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGG 160 (630)
T ss_dssp CCSCEEECCCTTCCCHHHHHHHHHHHHHGGGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHC
T ss_pred cCCCCCccccccCCHHHHHHHHHHhHHHHhhceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HHhC
Confidence 3 2345566666778889999999999999999999999999999999999999988899999999999999 3443
Q ss_pred hhccCCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHh
Q 012230 190 RLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVH 269 (468)
Q Consensus 190 ~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~ 269 (468)
+.||||||||+.||+.|++||++ ||+++++|+||+|+++||+++++|++++ +++++++|+|+||||+|
T Consensus 161 -------~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l--~~~~~i~~~P~GhGdv~ 228 (630)
T 3ogz_A 161 -------KEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLAL--DETGKLLRKPHGHGDVH 228 (630)
T ss_dssp -------TTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCB--CTTSSBCEECCCTTHHH
T ss_pred -------CCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecCCCceee--cCCCcccCCCCCCHHHH
Confidence 68999999999999999999998 9999999999999999999878899999 77889999999999999
Q ss_pred HHHhhcC------------------hhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCCCCcccc
Q 012230 270 ALLYSSG------------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIG 331 (468)
Q Consensus 270 ~aL~~sG------------------~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G 331 (468)
.+|+++| +|++|.++|++|+||+||||+|++++||.||||++.++++|++|||+|+|.|++|
T Consensus 229 ~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG 308 (630)
T 3ogz_A 229 SLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIG 308 (630)
T ss_dssp HHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSC
T ss_pred HHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCCCccee
Confidence 9999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCce-eEEEEecCCcchhHhhcCCCCCC-CCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcc
Q 012230 332 GITRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKY 409 (468)
Q Consensus 332 ~i~~~~~~~g~~-~v~~VEYsel~~~l~~~~~~~g~-l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~ 409 (468)
++|++++.||++ +|+||||+||+++++..++++|+ +.+.++|++||||||||||+|++|.+.+.++.++||+||||||
T Consensus 309 ~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~ 388 (630)
T 3ogz_A 309 LLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKY 388 (630)
T ss_dssp EEEEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCB
T ss_pred eEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHhccCccceecCCcc
Confidence 999988889999 88889999999999999999998 7777789999999999999999999999988999999999999
Q ss_pred cCCCCCcccCchhHhhhhccccccCCCCC-ceeEEEecCCcceecccCCCCc
Q 012230 410 KDASKTSFKSSTRLECMMQDYPKTLPPSA-KVGFTVMDTWLAYAPVKNNPED 460 (468)
Q Consensus 410 ~d~~~~~~~~~~klE~~i~D~~~~f~~~~-~~~~~~v~R~~eFsPvKN~~~~ 460 (468)
.|+++..+++++||||||||++++|+... ++++++|+| .||+||||+..+
T Consensus 389 ~d~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R-~~F~PVKn~~~~ 439 (630)
T 3ogz_A 389 SDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFER-FSYQPVKNSLEE 439 (630)
T ss_dssp SSSSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCG-GGCCBCCBCHHH
T ss_pred cCCcccccCcchhhhhHHHHHHHhccccCcceeEEEECC-CeeecccCChhH
Confidence 99988888899999999999999997555 899999999 999999999943
No 2
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=1.2e-84 Score=690.95 Aligned_cols=405 Identities=22% Similarity=0.336 Sum_probs=347.1
Q ss_pred hhHHHHHHHHHHCCCccccccccCCCCCHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHHHhhccCCCCCCCC-CCCCC
Q 012230 37 SEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKL-NSSYPGGLKSYIKTARELLADSKAGKNPFDG-FTPSV 114 (468)
Q Consensus 37 ~~~~~l~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL~~i-d~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~-~~~~v 114 (468)
++.++++++|+++||+|||+||++ ++++||++|++||.++ |+. .+..|++++.. .+. ...+++ +. |+
T Consensus 4 ~~~~~l~~~l~~~gQ~hl~~~~~~--l~~~ek~~l~~ql~~~~d~~---~l~~~~~~~~~---~~~--~~~~~~~i~-p~ 72 (486)
T 2yqc_A 4 KSQQQIIDSFKQANQDQLFQYYDS--LTIDQQQEFIDQLSTIEEPA---KLISTVEQAIQ---FSQ--TNSTSRNFT-QL 72 (486)
T ss_dssp CCHHHHHHHHHHTTCGGGGTTGGG--SCHHHHHHHHHHHHTSSSHH---HHHHHHHHHHH---HTC------CCCEE-CC
T ss_pred hhHHHHHHHHHHcCcHHHhhhhcc--CCHHHHHHHHHHHHhCcCHH---HHHHHHHHHHh---ccc--ccccccccc-CC
Confidence 346889999999999999999999 8999999999999999 963 56788887763 222 122333 44 46
Q ss_pred CCCccccC---CChhhhHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhh
Q 012230 115 PTGEVLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 189 (468)
Q Consensus 115 p~~~~~~~---~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~ 189 (468)
|.+...++ +++.+.+|++.|+++|+ |++||+||||+|||||++.||+++|+++.+++||||+++++|++++++|.
T Consensus 73 p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~ 152 (486)
T 2yqc_A 73 PNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQ 152 (486)
T ss_dssp CGGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHH
T ss_pred ChhhccccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhh
Confidence 76654433 44677899999999997 89999999999999999999999999888999999999999999999985
Q ss_pred hhccC--CccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCC-ceeccCCCCCccccccCCCh
Q 012230 190 RLAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDA-RLAMDPKNKYRIQTKPHGHG 266 (468)
Q Consensus 190 ~~~~g--~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~g-ki~l~~~~~~~i~~~P~G~G 266 (468)
++ +| +.+.||||||||++||+.|++||++|+|||++.++|+||+|+++||++. +| ++++ ++++.++|+|+|||
T Consensus 153 ~~-~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l--~~~~~i~~~P~G~G 228 (486)
T 2yqc_A 153 QY-LKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILL--ELKNSICQSPDGNG 228 (486)
T ss_dssp HH-HTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCE--EETTEECEEECCGG
T ss_pred hh-cCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcC-CCCcccc--CCCCccccCcCCch
Confidence 43 23 4568999999999999999999999999999999999999999999964 89 9999 77899999999999
Q ss_pred hHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeC-CCCcccccEEEEecCCCceeE
Q 012230 267 DVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMV 345 (468)
Q Consensus 267 ~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~~G~i~~~~~~~g~~~v 345 (468)
|+|.+|.++|+|++|.++|++|++|+|+||++++.+||.|+|||+.++++++++||+| .|.|++|++|+. ..||+++|
T Consensus 229 gi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~-~~dg~~~v 307 (486)
T 2yqc_A 229 GLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD-QDNQKPCV 307 (486)
T ss_dssp GHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE-TTTTEEEE
T ss_pred HHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE-ecCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999998 588999999965 23788766
Q ss_pred EEEecCCcchhHhhcCCCC--CCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCc---cccccCCc---ccCCCCC--
Q 012230 346 INVEYNQLDPLLRATGFPD--GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA---IKEFVNPK---YKDASKT-- 415 (468)
Q Consensus 346 ~~VEYsel~~~l~~~~~~~--g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~---lp~~vnpk---~~d~~~~-- 415 (468)
|||+|++++++..++++ |.+ .+.++|||||||++++|.+.+.+..+. ||.++|+| |.|.+++
T Consensus 308 --vEy~E~~~~~~~~~~~~~~~~~------~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~ 379 (486)
T 2yqc_A 308 --IEYSEISQELANKKDPQDSSKL------FLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEF 379 (486)
T ss_dssp --ECGGGSCHHHHHCEETTEEEEE------SSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCE
T ss_pred --EEEecCCHHHhhcccccccccc------cccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCccccccCee
Confidence 99999999998776554 433 344789999999999999877766567 99999998 6675432
Q ss_pred ---cccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCCcccccCC
Q 012230 416 ---SFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVNS 466 (468)
Q Consensus 416 ---~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~~~~~~ 466 (468)
+.++++|||+||||++.+|+ ..++++++|+|++|||||||+++++.|+|+
T Consensus 380 ~~p~~pn~~klE~~~~d~~~~~~-l~~~~~~~V~R~~~FsPvKn~~~~~~dsp~ 432 (486)
T 2yqc_A 380 YKPTEPNGIKLEQFIFDVFPSVE-LNKFGCLEVDRLDEFSPLKNADGAKNDTPT 432 (486)
T ss_dssp ECCSSCCEEEEECCGGGGGGGSC-GGGEEEEEECHHHHCCBCCSCTTSSSSSHH
T ss_pred ccCCCCCeeeeeehHhhHHhhcc-cCceEEEEECcccceeeecCCCCCCCCCHH
Confidence 33456899999999877652 128999999999999999999999999884
No 3
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=6.5e-81 Score=664.66 Aligned_cols=405 Identities=22% Similarity=0.320 Sum_probs=345.9
Q ss_pred hHHHHHHHHHHCCCccccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 012230 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTG 117 (468)
Q Consensus 38 ~~~~l~~~L~~~gQ~Hll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~ 117 (468)
+.++++++|+++||+|||+||++ ++++||++|++||.++|+. ++..+++++.+.+..|.......+.+. |+|.+
T Consensus 2 ~~~~l~~~l~~~gQ~hl~~~~~~--l~~~ek~~l~~ql~~~d~~---~~~~~~~~~~~~~~~s~~~~~~~~~i~-p~p~~ 75 (505)
T 1jv1_A 2 NINDLKLTLSKAGQEHLLRFWNE--LEEAQQVELYAELQAMNFE---ELNFFFQKAIEGFNQSSHQKNVDARME-PVPRE 75 (505)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGG--SCHHHHHHHHHHHHTCCHH---HHHHHHHHHHHCC-----------CCB-CCCGG
T ss_pred CHHHHHHHHHHcCcHHHHhhhhc--CCHHHHHHHHHHHHHhCHH---HHHHHHHHHHHhhhhccccCccccccc-CCChH
Confidence 35679999999999999999999 8999999999999999974 567788877654433332222234455 46766
Q ss_pred ccccC--CChhhhHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhcc
Q 012230 118 EVLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (468)
Q Consensus 118 ~~~~~--~~~~~~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~ 193 (468)
...++ ..+++.+|++.|+++|+ |+++|+||||+|||||++.||+++|+++.+|+||||+++++|+++|.++.+. +
T Consensus 76 ~~~~~~~~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~-~ 154 (505)
T 1jv1_A 76 VLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKY-Y 154 (505)
T ss_dssp GEEETTTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred hcccccCChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHh-c
Confidence 55444 44667899999999996 9999999999999999999999999987889999999999999999987543 4
Q ss_pred CCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHh
Q 012230 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (468)
Q Consensus 194 g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~ 273 (468)
|..+.|||+||||++||+.|.+||++|+|||+++++|++|.|+++||++. +|++++ ++++.++|+|+||||+|.+|.
T Consensus 155 G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~-~g~~~l--~~~~~~e~~P~GtGG~~~~L~ 231 (505)
T 1jv1_A 155 GNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSF-DGKIIL--EEKNKVSMAPDGNGGLYRALA 231 (505)
T ss_dssp SSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEET-TSCBCE--EETTEECEEECCGGGHHHHHH
T ss_pred CCCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcC-CCcccc--cCCcccccCCCCchHHHHHHH
Confidence 54568999999999999999999999999999999999999999999974 899999 788999999999999999999
Q ss_pred hcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeee-CCCCcccccEEEEecCCCceeEEEEecCC
Q 012230 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVP-RKAKEAIGGITRLTHADGRSMVINVEYNQ 352 (468)
Q Consensus 274 ~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~-r~~~e~~G~i~~~~~~~g~~~v~~VEYse 352 (468)
.+|++++|.++|++|++|+|+||+|++++||.|+|||+.++++++++|++ +.+.+++|++|+. +|+.++ |||+|
T Consensus 232 ~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~---dg~~~v--vEy~E 306 (505)
T 1jv1_A 232 AQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSE 306 (505)
T ss_dssp HTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGG
T ss_pred HcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE---CCeEEE--EEEee
Confidence 99999999999999999999999999999999999999999999999998 5689999999976 898865 99999
Q ss_pred cchhHhhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCc---ccCCCCC----cccCchhHhh
Q 012230 353 LDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKT----SFKSSTRLEC 425 (468)
Q Consensus 353 l~~~l~~~~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk---~~d~~~~----~~~~~~klE~ 425 (468)
++++.+..++++|.+. |+ ++|||||||++++|+++.....+.||.|||+| |.|.++. +.++.+|||+
T Consensus 307 ~p~~~~~~~~~~g~~~----~~--~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~ 380 (505)
T 1jv1_A 307 ISLATAQKRSSDGRLL----FN--AGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEK 380 (505)
T ss_dssp SCHHHHHCBCTTSSBS----SC--EEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEEC
T ss_pred CCHHHhhhcccccccc----cc--eeeEEEEEecHHHHHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHH
Confidence 9999988887766543 33 67999999999999988876667899999998 5554322 2334579999
Q ss_pred hhccccccCCCCCceeEEEecCCcceecccCCCCcc-cccCC
Q 012230 426 MMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA-AKVNS 466 (468)
Q Consensus 426 ~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~~~-~~~~~ 466 (468)
||||++.+| +++++++|+|++||+||||+.+++ .|+|.
T Consensus 381 ~i~d~~~~~---~~~~~~~V~R~~~FsPvKn~~~~~~~dsp~ 419 (505)
T 1jv1_A 381 FVFDIFQFA---KKFVVYEVLREDEFSPLKNADSQNGKDNPT 419 (505)
T ss_dssp CGGGGGGGC---SSEEEEEECHHHHCCBCCSCTTSSSSSSHH
T ss_pred HHHHHHhhc---CceEEEEECcccceeeccCCCCCCCCCCHH
Confidence 999987775 589999999999999999999988 88874
No 4
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=1.4e-77 Score=619.71 Aligned_cols=318 Identities=20% Similarity=0.266 Sum_probs=287.4
Q ss_pred hHHHHHhHHhhh--ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEc
Q 012230 128 INYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMT 205 (468)
Q Consensus 128 ~~~~~~G~~~l~--kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMt 205 (468)
++|++.|+++|+ |+|||+||||+|||||++.||+++|+++.+++||||+++++|+++|+++.++.+|.++.|||||||
T Consensus 21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMt 100 (405)
T 3oc9_A 21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMT 100 (405)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEe
Confidence 589999999997 999999999999999999999999998888999999999999999999865445556799999999
Q ss_pred CccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCC
Q 012230 206 SDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG 285 (468)
Q Consensus 206 S~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G 285 (468)
|++||+.|++||++|+|||+++++|++|.|+++||+ +.+|++++ ++++.++|+|+||||+|.+|..+|+|++|.++|
T Consensus 101 S~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i-~~dg~i~l--~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~G 177 (405)
T 3oc9_A 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV-DFNGKILY--EKKDKPYMAPNGHGGLFKALKDNGILEFMNEKG 177 (405)
T ss_dssp CTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECB-CTTSCBCE--EETTEECEEECCGGGHHHHHHHTTHHHHHHHHT
T ss_pred CCccHHHHHHHHHhCcccCCCccceEEEeeCceeEE-ecCCCeec--CCCCccccccCCChHHHHHHHHCCcHHHHHhcC
Confidence 999999999999999999999999999999999999 57999999 778999999999999999999999999999999
Q ss_pred ceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCC
Q 012230 286 LKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPD 364 (468)
Q Consensus 286 ~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~ 364 (468)
++|++|+||||+|++++||.|+|||++++++++++||+|+ |.|++|++|++ ||+++| |||+|++++ ++.++++
T Consensus 178 ieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~---dg~~~v--vEysei~~e-~e~~~~~ 251 (405)
T 3oc9_A 178 IKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKE---QERIKV--VEYTELTDE-LNKQLSN 251 (405)
T ss_dssp CCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGCCTT-TTCBCTT
T ss_pred CEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEE---CCeeEE--EEEeeCCHH-HhhcCCC
Confidence 9999999999999999999999999999999999999986 67999999987 999876 999999999 8788777
Q ss_pred CCCCCCCCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCccc---CCCC----CcccCchhHhhhhccccccCCCC
Q 012230 365 GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK---DASK----TSFKSSTRLECMMQDYPKTLPPS 437 (468)
Q Consensus 365 g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~---d~~~----~~~~~~~klE~~i~D~~~~f~~~ 437 (468)
|++. | .++||+||+|++++|++++ ...||.+++.|.. |.++ .+..+++|||+||||+++++
T Consensus 252 g~l~----f--n~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~--- 319 (405)
T 3oc9_A 252 GEFI----Y--NCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLA--- 319 (405)
T ss_dssp SCBS----S--CEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGC---
T ss_pred Ccee----e--ccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhc---
Confidence 6653 2 2789999999999999887 3468988876643 4333 23456789999999987664
Q ss_pred CceeEEEecCCcceecccCCCCcccccCC
Q 012230 438 AKVGFTVMDTWLAYAPVKNNPEDAAKVNS 466 (468)
Q Consensus 438 ~~~~~~~v~R~~eFsPvKN~~~~~~~~~~ 466 (468)
+++++++|+|++|||||||+++.++|+|.
T Consensus 320 ~~~~~~eV~R~~eF~PlKn~~g~~~dsp~ 348 (405)
T 3oc9_A 320 TKVSIFEIQRFIEFSALKNSLNESFDNVN 348 (405)
T ss_dssp SCEEEEECCHHHHCCBCCCCTTSSSSSHH
T ss_pred cceEEEEEChHhcccceecCCCCCCCCHH
Confidence 78999999999999999999999999874
No 5
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=6.3e-78 Score=635.89 Aligned_cols=357 Identities=17% Similarity=0.197 Sum_probs=292.2
Q ss_pred CCccccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhH
Q 012230 50 GQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFIN 129 (468)
Q Consensus 50 gQ~Hll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~ 129 (468)
-|.||+++|++ +++++|+.|.+|++.+. .+++++ +... ....+|+.+.| +|.+...+|.+ +..
T Consensus 52 ~~~~l~~~~~~--l~~~~~~~~~~el~~f~--------~lf~r~---l~~~-~~~~~~~~i~p-~p~~~~~~~~~--l~~ 114 (528)
T 3r3i_A 52 VKKELEKILTT--ASSHEFEHTKKDLDGFR--------KLFHRF---LQEK-GPSVDWGKIQR-PPEDSIQPYEK--IKA 114 (528)
T ss_dssp TTSSSTTTSSS--CCTTTTHHHHHHHHHHH--------HHHHHH---HHC--------CCCCC-CCTTTSEEHHH--HTT
T ss_pred HHHHHHHHHHh--cCHHHHHHHHHHHHHHH--------HHHHHH---Hhhc-cCCCCHHHCcC-CCHHHccCHhh--cCC
Confidence 39999999999 87889999999998863 344544 4332 23456888886 46665555432 122
Q ss_pred HHHH--hHHhhhceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCc
Q 012230 130 YEQA--GVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD 207 (468)
Q Consensus 130 ~~~~--G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~ 207 (468)
|+.. ...++.|+|||+||||||||||+++||+++|+. +++||||++++||+++++.|+ +.||||||||+
T Consensus 115 ~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~--sgktflql~~eqI~~l~~~~g-------~~IPl~IMTS~ 185 (528)
T 3r3i_A 115 RGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVR--NENTFLDLTVQQIEHLNKTYN-------TDVPLVLMNSF 185 (528)
T ss_dssp SCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEEE--TTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECT
T ss_pred ccccchhhhhcCceEEEEeCCCCccccCCCCCccceecC--CCCcHHHHHHHHHHHHHHHhC-------CCCCEEEEecc
Confidence 3222 235667999999999999999999999999984 899999999999999999875 68999999999
Q ss_pred cchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCC----CCCccccccCCChhHhHHHhhcChhHHHHH
Q 012230 208 DTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK----NKYRIQTKPHGHGDVHALLYSSGLLKEWHD 283 (468)
Q Consensus 208 ~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~----~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~ 283 (468)
.||++|++||++|+||| .+|++|+|+++||++ .+|++++... ++++++|+|+||||+|.+|.++|+|++|.+
T Consensus 186 ~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~-~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~ 261 (528)
T 3r3i_A 186 NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRIN-KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIG 261 (528)
T ss_dssp TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEE-TTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHH
T ss_pred chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEe-cCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHh
Confidence 99999999999999998 589999999999996 5788888321 177999999999999999999999999999
Q ss_pred CCceEEEEEecCCCccccccHHHHHHHHhc----CCcceEeeeeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHh
Q 012230 284 AGLKWVLFFQDTNGLLFKAIPASLGVSATK----QYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLR 358 (468)
Q Consensus 284 ~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~----~~~~~~kvv~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~ 358 (468)
+|+||+||+||||+++. +||.||||++.+ +++|++|||+|+ |.|++|++|++ +|++++ |||+|++++.+
T Consensus 262 ~Gieyi~v~nvDNlga~-vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~---dGk~~v--vEyseip~e~~ 335 (528)
T 3r3i_A 262 EGKEYIFVSNIDNLGAT-VDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY---EGKLRL--VEIAQVPKAHV 335 (528)
T ss_dssp TTCCEEEEEETTBTTCC-CCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS---SSSCEE--ECTTSSCGGGT
T ss_pred cCCEEEEEEccCCcccc-cCHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE---CCeEEE--EEecCCChhHh
Confidence 99999999999999886 599999999998 999999999974 88999999975 999876 99999998875
Q ss_pred hcCCCCCCCCCCCCCCCC-ccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCchhHhhhhccccccCCCC
Q 012230 359 ATGFPDGDVNCETGYSPF-PGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPS 437 (468)
Q Consensus 359 ~~~~~~g~l~~~~g~~~f-~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~ 437 (468)
.. +++++.| +||||||||+|++|+++++.....||+|||||+.+.. ++++|||+||||++++|
T Consensus 336 ~~---------~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~----~~viqlEt~igd~i~~f--- 399 (528)
T 3r3i_A 336 DE---------FKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGG----LNVIQLETAVGAAIKSF--- 399 (528)
T ss_dssp TT---------SSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSS----SCEEEEEBCSTTCSTTS---
T ss_pred hc---------cCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCC----CCEEEeHHHHHHHHHhc---
Confidence 43 2233333 3799999999999999999888899999999998743 57889999999998887
Q ss_pred CceeEEEecCCcceecccCCCC
Q 012230 438 AKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 438 ~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
+++.+++|+|+ ||+||||+++
T Consensus 400 ~~~~~i~VpR~-rF~PvKn~sd 420 (528)
T 3r3i_A 400 ENSLGINVPRS-RFLPVKTTSD 420 (528)
T ss_dssp SSCCCEECCGG-GCCBCCSHHH
T ss_pred cCcEEEEEehH-HcccccchHH
Confidence 35777999995 5999999865
No 6
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=2.8e-77 Score=626.96 Aligned_cols=339 Identities=19% Similarity=0.182 Sum_probs=289.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhhceEEEEecCCCCCcCCcCCCcccCCccC
Q 012230 88 SYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAET 167 (468)
Q Consensus 88 ~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP~~~ 167 (468)
.|.....++++.. .+..+|+.+.| |. ...++++..... .|+++|+|+|||+||||||||||+++||+++|++
T Consensus 31 ~f~~~~~~~~~~~-~~~i~~~~i~p--~~-~~~~~~~l~~~~---~G~~~L~kvavvlLaGGlGTRLG~~~pKg~~~v~- 102 (484)
T 3gue_A 31 IFLIQHALVRKGE-TGYIPEKSISP--VE-SLPFLQGIETKG---ENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVK- 102 (484)
T ss_dssp HHHHHHHHHHTTC-CCCCCGGGCEE--CC-CCCBHHHHCCSS---CCHHHHTTEEEEEEECCCCGGGTCSSCGGGSEEE-
T ss_pred HHHHHHHHHhcCC-CCccCHhhCCC--hh-ccCChhhcCCch---HHHHHHhhcEEEEEcCCcccccCCCCCceeeecC-
Confidence 4445555555432 34578888875 22 333332211111 6999999999999999999999999999999996
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCc
Q 012230 168 TTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDAR 247 (468)
Q Consensus 168 ~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gk 247 (468)
+++||||++++||++++++++ +.||||||||+.||++|++||++|+|||+++++|++|+|+++||++.+++.
T Consensus 103 -sgksflql~~eqI~~l~~~~~-------~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~ 174 (484)
T 3gue_A 103 -NGQTFLDFTALQLEHFRQVRN-------CNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFF 174 (484)
T ss_dssp -TTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCC
T ss_pred -CCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCCCc
Confidence 899999999999999999875 789999999999999999999999999999999999999999999764444
Q ss_pred eeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCC-C
Q 012230 248 LAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-A 326 (468)
Q Consensus 248 i~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~-~ 326 (468)
++.+ +++++++|+|+||||+|.+|.+||+|++|.++|+||+||+|||| |++++||.|+|||+.++++|++|||+|+ +
T Consensus 175 ~i~~-~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~~lG~~~~~~~d~~~kvv~Kt~~ 252 (484)
T 3gue_A 175 PVTY-EADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLMEVCRRTES 252 (484)
T ss_dssp BCCC-TTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHHHHHHHHHTTCSEEEEEEECCTT
T ss_pred eeec-CCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHHHHHHHHhcCCCEEEEEEECCCC
Confidence 4533 45669999999999999999999999999999999999999999 9999999999999999999999999986 5
Q ss_pred CcccccEEEE-------ecCCCceeEEEEecCCcchhHhhc-CCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhc-
Q 012230 327 KEAIGGITRL-------THADGRSMVINVEYNQLDPLLRAT-GFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKT- 397 (468)
Q Consensus 327 ~e~~G~i~~~-------~~~~g~~~v~~VEYsel~~~l~~~-~~~~g~l~~~~g~~~f~gNinn~~~~l~~l~~~l~~~- 397 (468)
.|++|++|++ .+.+|++++ +||+|++++.++. +++ +||++| ||||+|+++.+|++.+++.
T Consensus 253 dekgG~l~~~~~~~~~~~~~dG~~~v--vEyseip~e~~~~f~~~-------~g~~~F--NtnNi~~~l~~l~~~l~~~~ 321 (484)
T 3gue_A 253 DKKGGHLAYKDVIDETTGQTRRRFVL--RESAQCPKEDEDSFQNI-------AKHCFF--NTNNIWINLMELKKMMDEQL 321 (484)
T ss_dssp CCSSEEEEEEC--------CCCEEEE--EEGGGSCGGGHHHHTCT-------TTSCEE--EEEEEEEEHHHHHHHHHHTT
T ss_pred CCceeEEEEEccccccccCCCCCEEE--EEeccCCHHHHhhhcCC-------CCceEe--EeeeEEEEHHHHHHHHHhcc
Confidence 6788889986 245899876 9999999988764 443 356666 9999999999999999886
Q ss_pred -CCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCC
Q 012230 398 -GGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 398 -~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
...||+|+|+|+.|..++..++++|||+||||++++| +++++++|+| +||+||||+++
T Consensus 322 g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R-~rF~PvKn~sd 380 (484)
T 3gue_A 322 GVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPR-ERFAPVKTCSD 380 (484)
T ss_dssp TCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCG-GGCCCCSSHHH
T ss_pred CcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEECh-hhccccccchH
Confidence 4467999999999988888889999999999998886 4899999999 89999999864
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=2.5e-67 Score=558.05 Aligned_cols=338 Identities=19% Similarity=0.223 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhhceEEEEecCCCCCcCCcCCCcccCCcc
Q 012230 87 KSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAE 166 (468)
Q Consensus 87 ~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP~~ 166 (468)
..|.....++++.+ .+..+|+.+.|+ +...++++. .. ..|+++|++++||+||||+|||||++.||+++|++
T Consensus 30 ~~f~~~~~~~~~~~-~~~i~~~~i~p~---~~~~~~~~~--~~--~~g~~~l~k~avViLAGGlGTRLg~~~PK~llpV~ 101 (505)
T 2oeg_A 30 RTFIAQHVMVSKGE-TGSIPDSAIMPV---DSLDALDSL--TI--ECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEVK 101 (505)
T ss_dssp HHHHHHHHHHHTTC-CCCCCGGGCBCC---CCCCBGGGC--CC--CCCHHHHHTEEEEEEECCCCGGGTCCSCGGGSEEE
T ss_pred HHHHHHHHHHHhcC-CCCcChhhcCCh---hhccChhhc--ch--hHHHHHHhcceEEEEcCCcccccCCCCCCcccccC
Confidence 34444555555442 234567777753 333333321 11 37999999999999999999999999999999996
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHH-hCCCCCCCCCcEEEEecCceeeeecCC
Q 012230 167 TTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE-SNSYFGMKPTQVKLLKQEKVACLDDND 245 (468)
Q Consensus 167 ~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~-~~~~FGl~~~~v~~f~Q~~~P~~~~~~ 245 (468)
+|+||||+++++|++++.+|+ +.||||||||++||+.|++||+ +|++||+++++|++|+|+++||++.++
T Consensus 102 --~gk~fLe~~ie~l~~~~~~~g-------~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~ 172 (505)
T 2oeg_A 102 --DGKTFLDFTALQVQYLRQHCS-------EHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDT 172 (505)
T ss_dssp --TTEEHHHHHHHHHHHHHHHTC-------TTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTT
T ss_pred --CCCcHHHHHHHHHHHHHHhcC-------CCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecCC
Confidence 799999999999999998875 6799999999999999999999 999999999999999999999998766
Q ss_pred CceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccHHHHHHHHhcCCcceEeeeeCC
Q 012230 246 ARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK 325 (468)
Q Consensus 246 gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~ 325 (468)
++++.+ +++..++|+|+||||+|.+|+++|++++|.++|++|++|+|+|| |++.+||.|+|||++++++++++|++|+
T Consensus 173 ~~~i~~-~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DN-L~~~~D~~llg~~~~~~ad~~~~v~~k~ 250 (505)
T 2oeg_A 173 LEPAAW-AENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDN-LGATIDKRVLAYMEKEKIDFLMEVCRRT 250 (505)
T ss_dssp CCBCCC-TTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTC-TTCCCCHHHHHHHHHHTCSEEEEEEECC
T ss_pred Cceeec-CCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCc-cccccCHHHHHHHHhcCCcEEEEEEEec
Confidence 687732 44556999999999999999999999999999999999999999 7889999999999999999999999987
Q ss_pred CC-cccccEEEEec-----CCCc-------eeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCc-cceeeEEEehhhhH
Q 012230 326 AK-EAIGGITRLTH-----ADGR-------SMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP-GNINQLILELGPYM 391 (468)
Q Consensus 326 ~~-e~~G~i~~~~~-----~~g~-------~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~-gNinn~~~~l~~l~ 391 (468)
.. +++|+++. ++ .+|+ +.+ +||+|++++..... +|.+.|+ ||||||||+|++|+
T Consensus 251 ~~d~~~Gvl~~-~~~~~~~~dg~~nvEyn~~~l--lEyse~p~e~~~~~---------~g~~~f~~~Ninn~~~~l~~l~ 318 (505)
T 2oeg_A 251 ESDKKGGHLAR-QTVYVKGKDGQPDAEKRVLLL--RESAQCPKADMESF---------QDINKYSFFNTNNLWIRLPVLL 318 (505)
T ss_dssp TTCCSSEEEEE-EEEEECCSSSCCCEEEEEEEE--EEGGGSCGGGHHHH---------HCTTTTCEEEEEEEEEEHHHHH
T ss_pred CCccceeEEEE-ecccccccCCccccccCceeE--EEeccCChhhhhcc---------cCccccCeeEEEEEEEEHHHHH
Confidence 65 56676665 22 5898 655 99999988876543 2233343 79999999999999
Q ss_pred HHHhhc--CCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCCC
Q 012230 392 EELKKT--GGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPE 459 (468)
Q Consensus 392 ~~l~~~--~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~~ 459 (468)
+.++.. ...||+|+|+|+.+..++..++++|||+||||++++| +++++++|+|+ ||+||||+++
T Consensus 319 ~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~-~FsPvKn~~d 384 (505)
T 2oeg_A 319 ETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF---ESASAIVVPRS-RFAPVKTCAD 384 (505)
T ss_dssp HHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC---TTCEEEECCGG-GCCCCSSHHH
T ss_pred HHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc---CcceEEEeccc-eeecccCCCC
Confidence 999874 3467999999998876667788999999999999987 36899999997 9999999743
No 8
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=1.9e-62 Score=518.04 Aligned_cols=353 Identities=18% Similarity=0.187 Sum_probs=286.1
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChh-hhHHHHHhHHhhhceEEEE
Q 012230 67 EKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDT-FINYEQAGVKEAKNAAFVL 145 (468)
Q Consensus 67 e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~s~~~~~~~~~~~~~vp~~~~~~~~~~~-~~~~~~~G~~~l~kvavv~ 145 (468)
+..+|...+..-+-...-.+..|.+...++++.+ ....+|+.+.| +|.+...++++.. ..++++.|++++.|++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~i~p-~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vvi 84 (469)
T 2icy_A 7 NLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGE-AQHIEWSKIQT-PTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLK 84 (469)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHC-------CCGGGCBC-CCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEE
T ss_pred HHHHHHhhcCchhccchhhHHHHHHHHHHHHhcc-CCCCccccccc-CCcccccChhhcccchhhHHHHHHhhccceEEE
Confidence 3445555554332221112234445555554332 23457888875 6766666654432 1456778999999999999
Q ss_pred ecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCCCCCC
Q 012230 146 VAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGM 225 (468)
Q Consensus 146 LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~~FGl 225 (468)
||||+|||||++.||+++|+. +|+||||+++++|++++.+++ +.|||+||||++||+.|++||++|++||+
T Consensus 85 LAGGlGTRLg~~~PK~llpv~--~gkp~Le~~i~~l~~~~~~~G-------~~ip~vimts~~t~e~t~~~f~~~~~fG~ 155 (469)
T 2icy_A 85 LNGGLGTTMGCTGPKSVIEVR--DGLTFLDLIVIQIENLNNKYG-------CKVPLVLMNSFNTHDDTHKIVEKYTNSNV 155 (469)
T ss_dssp EECCBSGGGTCCSBGGGSEEE--TTEEHHHHHHHHHHHHHHHHS-------CCCCEEEEECTTTHHHHHHHHGGGTTSSS
T ss_pred EcCCccccCCCCCCccccccC--CCCCHHHHHHHHHHHHHHhcC-------CCccEEEEeCCCCHHHHHHHHHhcccCCc
Confidence 999999999999999999983 699999999999999988774 67999999999999999999999999998
Q ss_pred CCCcEEEEecCceeeeecCCCceecc-CCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCccccccH
Q 012230 226 KPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP 304 (468)
Q Consensus 226 ~~~~v~~f~Q~~~P~~~~~~gki~l~-~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~~Dp 304 (468)
+|++|+|+++||++. +|++++. +.+++.++|+|+||||+|.+|.++|++++|.++|++|++|+|+|| |+..+||
T Consensus 156 ---~I~~f~Q~~~P~i~~-e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~ 230 (469)
T 2icy_A 156 ---DIHTFNQSKYPRVVA-DEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDL 230 (469)
T ss_dssp ---CEEEEECCCEECEET-TTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCH
T ss_pred ---eEEEEEecceeeEcc-ccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCH
Confidence 799999999999975 7888883 223478999999999999999999999999999999999999999 7888999
Q ss_pred HHHHHHHhcCCcceEeeeeCC-CCcccccEEEEecCCCceeEEEEecCCcchhHhhc-CCCCCCCCCCCCCCCCccceee
Q 012230 305 ASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRAT-GFPDGDVNCETGYSPFPGNINQ 382 (468)
Q Consensus 305 ~~lG~~~~~~~~~~~kvv~r~-~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~-~~~~g~l~~~~g~~~f~gNinn 382 (468)
.|+|||++++++++++|++++ |.+++|++|.. +|+..+ +||+|++...... ++ ..+|++ +||||
T Consensus 231 ~ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~---dg~~~v--vE~~e~p~~~~~e~k~-------~~~~~~--~N~g~ 296 (469)
T 2icy_A 231 TILKHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFKS-------IEKFKI--FNTNN 296 (469)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEE---TTEEEE--ECGGGSCGGGHHHHHS-------SSSCCE--EEEEE
T ss_pred HHHHHHHHcCCCeeEEEEEeccCCCceeEEEEE---CCEEEE--EEEeccChhhhhhhcc-------ccccce--eeEEE
Confidence 999999999999999999976 56899999965 888765 9999999875432 11 124664 49999
Q ss_pred EEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcceecccCCC
Q 012230 383 LILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 458 (468)
Q Consensus 383 ~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~eFsPvKN~~ 458 (468)
|||++++|+++++.....||.++|||+.|+ .+++|||+||||++.+| +++.+++|+|+ ||+||||++
T Consensus 297 y~~~~~~L~~i~~~~~~~lp~~v~~K~id~-----~~~~klE~~~~D~~~~~---~~~~~~~V~R~-~F~PvKn~~ 363 (469)
T 2icy_A 297 LWVNLKAIKKLVEADALKMEIIPNPKEVDG-----VKVLQLETAAGAAIRFF---DNAIGVNVPRS-RFLPVKASS 363 (469)
T ss_dssp EEEEHHHHHHHHHTTCCCCCCBCCEEEETT-----EEEECCBCCGGGGGGGS---TTCEEEECCGG-GCCBCCSHH
T ss_pred EEEcHHHHHHHHhcccCCchhhccceecCC-----CceEeehHhhHHHHHhc---CCeEEEEechh-HcCcCCCHH
Confidence 999999999988877788999999999972 47899999999998887 35677899996 899999975
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-61 Score=514.31 Aligned_cols=358 Identities=18% Similarity=0.183 Sum_probs=286.8
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCCccccCCChhhhHHHH
Q 012230 54 LFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQ 132 (468)
Q Consensus 54 ll~~~~~~~l~~~e~~~L~~qL~~id~~~~~~l~~~~~~~~~~l~~-s~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~ 132 (468)
|-++|+....++++|++|.+||..++ .+++ ++++. +..+..+|+.+.| +|.+...++.+.. .++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~--~~~- 84 (488)
T 2i5k_A 20 LNKLADSSKLDDAARAKFENELDSFF--------TLFR---RYLVEKSSRTTLEWDKIKS-PNPDEVVKYEIIS--QQP- 84 (488)
T ss_dssp TTCCC--------CCSCTHHHHHHHH--------HHHH---HHHHHHHSCCSCCGGGEEC-CCTTTEEEHHHHH--SSC-
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH--------HHHH---HHHhcccccCCCccccccc-CChhcccChhhcc--cch-
Confidence 55566652222678888999998654 3333 33332 3335677888875 5665555543211 111
Q ss_pred HhHHhhhceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHH
Q 012230 133 AGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (468)
Q Consensus 133 ~G~~~l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~ 212 (468)
.|+.++.|++||+||||+|||||++.||+++|+ .+|+||||++++++++++..++ +.|||+||||++|++.
T Consensus 85 ~~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V--~~gk~~Le~~i~~i~~l~~~~G-------~~Ip~vImts~~t~e~ 155 (488)
T 2i5k_A 85 ENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIEYLNRQYD-------SDVPLLLMNSFNTDKD 155 (488)
T ss_dssp CCSTTGGGEEEEEECCCBSGGGTCCSBSTTSCC--BTTBCHHHHHHHHHHHHHHHHT-------CCCEEEEECCTTTHHH
T ss_pred hhhhhcCCceEEEEcCCCcccCCCCCCcccccc--CCCCcHHHHHHHHHHHhHHhcC-------CCccEEEEECCCCHHH
Confidence 277888899999999999999999999999998 4699999999999999987764 6799999999999999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceecc-CCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEE
Q 012230 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLF 291 (468)
Q Consensus 213 t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~-~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v 291 (468)
|++||+++++||+ +|.+|.|+++||++ .+|++++. +.+++.++|+|+||||+|.+|..+|++++|.++|++|++|
T Consensus 156 t~~~~~~~~~fg~---~i~~f~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V 231 (488)
T 2i5k_A 156 TEHLIKKYSANRI---RIRSFNQSRFPRVY-KDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFV 231 (488)
T ss_dssp HHHHHGGGCSSSC---EEEEECCCCEECEE-TTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEE
T ss_pred HHHHHHhccccCc---eEEEEEeCccceEc-cccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEE
Confidence 9999999999997 69999999999996 58888883 2233479999999999999999999999999999999999
Q ss_pred EecCCCccccccHHHHHHHHhcCCcceEeeeeC-CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCC
Q 012230 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (468)
Q Consensus 292 ~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~r-~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~ 370 (468)
+|+|| |++.+||.++|||..++++++++++++ .|.+++|++++. +|+..+ |||+|++++.+.... +.
T Consensus 232 ~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~---dG~~~i--VE~~e~~~e~~~~~~--~~---- 299 (488)
T 2i5k_A 232 SNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISY---DGQVRL--LEVAQVPKEHIDEFK--NI---- 299 (488)
T ss_dssp ECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE---TTEEEE--ECGGGSCTTSHHHHT--CT----
T ss_pred EeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE---CCcEEE--EEeccCCHHHHhhcc--cc----
Confidence 99999 999999999999999999999999997 477889999875 888554 999999988665442 11
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhhcCCccccccCCcccCCCCCcccCchhHhhhhccccccCCCCCceeEEEecCCcc
Q 012230 371 TGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLA 450 (468)
Q Consensus 371 ~g~~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpk~~d~~~~~~~~~~klE~~i~D~~~~f~~~~~~~~~~v~R~~e 450 (468)
.+|++ +|||||||++++|.+.+.+....||.++|+|+.+. .....+++|||+||||++++| +++.+++|+|+ |
T Consensus 300 ~~~~~--~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~-~ 372 (488)
T 2i5k_A 300 RKFTN--FNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-DGHEINVLQLETACGAAIRHF---DGAHGVVVPRS-R 372 (488)
T ss_dssp TTCCE--EEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC------CEECCBCCGGGGGGGS---SSCEEEEECGG-G
T ss_pred cccCE--EEEEEEEEeHHHHHHHHhhccCCCcceecCccccC-CCCCCceEEeeehhhhHHhhc---cCceEEEeccc-c
Confidence 24664 49999999999999999987889999999998753 223457899999999999987 36777899997 9
Q ss_pred eecccCCC
Q 012230 451 YAPVKNNP 458 (468)
Q Consensus 451 FsPvKN~~ 458 (468)
|+||||++
T Consensus 373 F~PvKn~~ 380 (488)
T 2i5k_A 373 FLPVKTCS 380 (488)
T ss_dssp CCBCCSHH
T ss_pred cccccCCc
Confidence 99999975
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.15 E-value=3.5e-10 Score=120.04 Aligned_cols=191 Identities=20% Similarity=0.213 Sum_probs=130.7
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
.++||+||||.||||....||.++|+. ||+++++.++.+..+ .+--+++..++..+.+.+||++
T Consensus 12 ~~~vvILAaG~GtRm~~~~pK~l~pv~---gkp~i~~~l~~~~~~-------------g~~~i~vv~~~~~~~i~~~~~~ 75 (501)
T 3st8_A 12 DTAVLVLAAGPGTRMRSDTPKVLHTLA---GRSMLSHVLHAIAKL-------------APQRLIVVLGHDHQRIAPLVGE 75 (501)
T ss_dssp CEEEEEEECSCCGGGCCSSCGGGCEET---TEEHHHHHHHHHHHH-------------CCSEEEEEECTTHHHHHHHHHH
T ss_pred CceEEEECCcCcccCCCCCCHHHeEEC---ChhHHHHHHHHHHhC-------------CCCEEEEEeCCCHHHHHHHHHH
Confidence 689999999999999999999999997 999999999998774 2443444446778999999986
Q ss_pred C-CCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 220 N-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 220 ~-~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
. +.||.+ |.+.. ...|.|+|+....... .+...-...+.+..-|.++
T Consensus 76 ~~~~~~~~---i~~~~------------------------q~~~lGTa~Av~~a~~-----~l~~~~~~~~lvl~gd~~l 123 (501)
T 3st8_A 76 LADTLGRT---IDVAL------------------------QDRPLGTGHAVLCGLS-----ALPDDYAGNVVVTSGDTPL 123 (501)
T ss_dssp HHHHHTSC---CEEEE------------------------CSSCCCHHHHHHHHHT-----TSCTTCCSEEEEEETTCTT
T ss_pred HHHhcCCc---EEEEE------------------------cCCCCCcHHHHHHHHH-----HhccccccceeeecCccee
Confidence 2 344432 22221 2357899987665432 2222233567777777766
Q ss_pred ccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCc
Q 012230 299 LFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (468)
Q Consensus 299 ~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~ 377 (468)
...-+ -.++-++...++++++.+++......+|.+.+ ..+|+.. ..||..+-++.-... . .
T Consensus 124 ~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~--~~~g~v~-~ivEk~~~~~~~~~i-------------~--~ 185 (501)
T 3st8_A 124 LDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILR--TQDHEVM-AIVEQTDATPSQREI-------------R--E 185 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCEE-EEECGGGCCHHHHHC-------------C--E
T ss_pred ecHHHHHHHHHHHhhccccceEeeeccCCchhcccccc--ccceeEE-eeccccCCChhhccc-------------e--e
Confidence 53322 25678888899999888888766678898875 3466643 237765554432211 1 2
Q ss_pred cceeeEEEehhhhHHHHhh
Q 012230 378 GNINQLILELGPYMEELKK 396 (468)
Q Consensus 378 gNinn~~~~l~~l~~~l~~ 396 (468)
.|+....|+-+.+.+.+.+
T Consensus 186 in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 186 VNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp EEEEEEEEEHHHHHHHHTT
T ss_pred eeceeeeecchhHHHhhhh
Confidence 4888999998877777653
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=98.73 E-value=1.1e-07 Score=91.81 Aligned_cols=185 Identities=16% Similarity=0.081 Sum_probs=115.6
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+ ||.++|+. |||++++.++++.... . -.++|.| + ++.+.+++++
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i~---GkPli~~~l~~l~~~~-----------~-~~ivVv~-~--~~~i~~~~~~ 60 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADIG---GKPMIQWVYEQAMQAG-----------A-DRVIIAT-D--DERVEQAVQA 60 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT-----------C-SEEEEEE-S--CHHHHHHHHH
T ss_pred ceEEEEecCcCCCCCC---CcceeeEC---CEEHHHHHHHHHHhCC-----------C-CeEEEEC-C--HHHHHHHHHH
Confidence 5789999999999995 79999996 9999999999987631 1 1345555 2 5889999985
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
||.. +++ .....|.|.|+++.++.. +...+-+++.+.+-|+++.
T Consensus 61 ---~g~~---------------------v~~------~~~~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli 104 (252)
T 3oam_A 61 ---FGGV---------------------VCM------TSPNHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLI 104 (252)
T ss_dssp ---TTCE---------------------EEE------CCTTCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTC
T ss_pred ---cCCE---------------------EEE------cCCCCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeec
Confidence 3432 222 011357889987776532 2112457899998888776
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCccc-----ccEEEEecCCCceeEEEEecCC--cchhH---hhcCCCCCCCC
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAI-----GGITRLTHADGRSMVINVEYNQ--LDPLL---RATGFPDGDVN 368 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~-----G~i~~~~~~~g~~~v~~VEYse--l~~~l---~~~~~~~g~l~ 368 (468)
...+. .++..+.+.++++++-+++-...+.+ |.++. ..+|+. +.+++ ++..- ..++. ..
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~--d~~g~v----~~fsr~~i~~~~~~~~~~~~---~~- 174 (252)
T 3oam_A 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVIT--DKSGYA----LYFSRATIPWDRDNFAKADK---AI- 174 (252)
T ss_dssp CHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEE--CTTSBE----EEEESSCSSCCHHHHHSSSC---CC-
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEE--CCCCeE----EEEeCCCCCCCCCccccccc---cc-
Confidence 44332 55666666788888877774333333 55543 346653 45555 22110 01110 00
Q ss_pred CCCCCCCCccceeeEEEehhhhHHHHh
Q 012230 369 CETGYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 369 ~~~g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
..++ ..|+....|+-+.|.+...
T Consensus 175 ---~~~~-~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 175 ---VQPL-LRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp ---CSCE-EEEEEEEEEETTHHHHHHH
T ss_pred ---cccc-eEEEEEEEcCHHHHHHHHc
Confidence 0112 3599999999987776554
No 12
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=98.67 E-value=3e-07 Score=89.47 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=114.7
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~ 215 (468)
++.+|+||||.||||+. +.||.++|+. |++++++.++++... .+. ++|.|.....+.+.+
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~iivv~~~~~~~~~~~ 87 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPVG---RYPMIYHAVYKLKQC-------------DITDIMIITGKEHMGDVVS 87 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEET---TEEHHHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHH
T ss_pred CcEEEEECCCCccccccccCCCCceecEEC---CEEHHHHHHHHHHHC-------------CCCEEEEECChhhHHHHHH
Confidence 67899999999999986 8899999996 999999999998752 243 455555444577888
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
+++....||+. +.+ .. ...+.|.|+..... ++.+. -+++.|.+.|
T Consensus 88 ~~~~~~~~~~~---i~~----------------~~--------~~~~~G~~~al~~a-----~~~~~---~~~~lv~~~D 132 (269)
T 4ecm_A 88 FLGSGQEFGVS---FTY----------------RV--------QDKAGGIAQALGLC-----EDFVG---NDRMVVILGD 132 (269)
T ss_dssp HHTTSGGGTCE---EEE----------------EE--------CSSCCCHHHHHHTT-----HHHHT---TSEEEEEETT
T ss_pred HHhhccccCce---EEE----------------ee--------CCccCcHHHHHHHH-----HHhcC---CCcEEEEeCC
Confidence 88765455542 111 11 11356776655543 22221 3688888888
Q ss_pred CCcccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCC
Q 012230 296 NGLLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (468)
Q Consensus 296 N~l~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~ 374 (468)
.+.. .| -.++..+..+++++++-+++.......|.+..- +|+. +++.|-+. .+ .
T Consensus 133 ~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d---~g~v----~~~~ekp~------~~--------~-- 187 (269)
T 4ecm_A 133 NIFS--DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ---NRKI----IEIEEKPK------EP--------K-- 187 (269)
T ss_dssp EEES--SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEE---TTEE----EEEEESCS------SC--------S--
T ss_pred ccCc--cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEc---CCEE----EEEEECCC------CC--------C--
Confidence 8553 33 366777878888888877775555667766542 4542 33333220 01 0
Q ss_pred CCccceeeEEEehhhhHHHHh
Q 012230 375 PFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 375 ~f~gNinn~~~~l~~l~~~l~ 395 (468)
.+..|+...+|+-+.+ +.+.
T Consensus 188 ~~~~~~Giy~~~~~~l-~~l~ 207 (269)
T 4ecm_A 188 SSYAVTGIYLYDSKVF-SYIK 207 (269)
T ss_dssp CSEEEEEEEEECTTHH-HHHT
T ss_pred CcEEEEEEEEECHHHH-Hhhh
Confidence 1135899999997754 4443
No 13
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=98.50 E-value=1e-06 Score=86.17 Aligned_cols=190 Identities=14% Similarity=0.079 Sum_probs=114.5
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+ +|.++|+. ||+++++.++++.... . -.++|.|. ++.+.+++++
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i~---GkPmi~~~l~~l~~~~-----------i-~~IvV~t~---~~~i~~~~~~ 76 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDIN---GKPMIVHVLERARESG-----------A-ERIIVATD---HEDVARAVEA 76 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT-----------C-SEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCC---CcceeeEC---CeEHHHHHHHHHHhCC-----------C-CEEEEECC---HHHHHHHHHH
Confidence 5899999999999994 59999996 9999999999987531 1 13455552 5788888875
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
||.. +++ . ....|.|.|++..++.. +...+.+++.+.+-|+++.
T Consensus 77 ---~g~~---------------------v~~--~----~~~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~Pli 120 (264)
T 3k8d_A 77 ---AGGE---------------------VCM--T----RADHQSGTERLAEVVEK------CAFSDDTVIVNVQGDEPMI 120 (264)
T ss_dssp ---TTCE---------------------EEE--C----CTTCCSHHHHHHHHHHH------HTCCTTCEEEEECTTCTTC
T ss_pred ---cCCE---------------------EEE--e----cCCCCCCHHHHHHHHHH------hccCCCCEEEEEcCCcccC
Confidence 3432 222 0 11256788887666532 3213558999999999876
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeCCCCcccc---cEEEEecCCCceeEEEEecCCcch-hHhhcC-CCCCCCCCCCCC
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIG---GITRLTHADGRSMVINVEYNQLDP-LLRATG-FPDGDVNCETGY 373 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G---~i~~~~~~~g~~~v~~VEYsel~~-~l~~~~-~~~g~l~~~~g~ 373 (468)
...+. .++..+.+.++++++-+++-...+.++ .+-.+...+|+. +.+++-+. ..+... ...... ..
T Consensus 121 ~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~----l~fsr~~ip~~r~~~~~~~~~~----~~ 192 (264)
T 3k8d_A 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYA----LYFSRATIPWDRDRFAEGLETV----GD 192 (264)
T ss_dssp CHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBE----EEEESSCCSCCHHHHHHCSSCC----CS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeE----EEEecCCCCCCCcccccccccc----CC
Confidence 54332 455666677888888888743322222 221222456763 56666321 111000 000001 01
Q ss_pred CCCccceeeEEEehhhhHHHHh
Q 012230 374 SPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 374 ~~f~gNinn~~~~l~~l~~~l~ 395 (468)
++ ..|+....|+-+++.+...
T Consensus 193 ~~-~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 193 NF-LRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp CC-EEECSEEEEEHHHHHHHHH
T ss_pred cc-eEEEEEEEECHHHHHHHHh
Confidence 12 3599999999887766543
No 14
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=98.48 E-value=1.5e-06 Score=89.76 Aligned_cols=202 Identities=12% Similarity=0.090 Sum_probs=116.4
Q ss_pred hhceEEEEecCCCCCcCC---cCCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHH
Q 012230 138 AKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRT 213 (468)
Q Consensus 138 l~kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t 213 (468)
..++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++... .+.-++....+.++.+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~---gk~pli~~~l~~l~~~-------------gi~~i~vv~~~~~~~i 73 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFG---GKARIIDFALSNALNS-------------GIRRIGVATQYKAHSL 73 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEET---TTEETHHHHHHHHHHT-------------TCCEEEEEECTTCHHH
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccC---CCCcHHHHHHHHHHhC-------------CCCeEEEEeCCChHHH
Confidence 346889999999999998 67899999996 99 9999999999762 2443444445567889
Q ss_pred HHHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCcccccc---CCChhHhHHHhhcChhHHHHHCCceEEE
Q 012230 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKP---HGHGDVHALLYSSGLLKEWHDAGLKWVL 290 (468)
Q Consensus 214 ~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P---~G~G~i~~aL~~sG~l~~l~~~G~~yi~ 290 (468)
.+++++. ||+... +.+..++.+ . . . .....| .|.++..... ++.+...+-+++.
T Consensus 74 ~~~~~~~--~~~~~~----~~~~~v~i~--------~--~-~-~~~~~~~~~~Gt~~al~~a-----~~~l~~~~~~~~l 130 (420)
T 3brk_X 74 IRHLQRG--WDFFRP----ERNESFDIL--------P--A-S-QRVSETQWYEGTADAVYQN-----IDIIEPYAPEYMV 130 (420)
T ss_dssp HHHHHHH--SCCCCG----GGTCEEEEE--------C--C-C--------CCCCHHHHHHTT-----HHHHHHHCCSEEE
T ss_pred HHHHhhh--hccccc----cccCCEEEe--------C--c-c-ccccCCccccCCHHHHHHH-----HHHHHhcCCCEEE
Confidence 9999864 454310 001111111 0 0 0 000012 5776655432 2344433457888
Q ss_pred EEecCCCcccccc-HHHHHHHHhcCCcceEeeeeC--CCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCC
Q 012230 291 FFQDTNGLLFKAI-PASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDV 367 (468)
Q Consensus 291 v~~vDN~l~~~~D-p~~lG~~~~~~~~~~~kvv~r--~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l 367 (468)
|.+.|.+ . ..| -.++..+.+.++++++-+.+. .+....|.+.. ..+|+. +++.|-+.... ..
T Consensus 131 v~~~D~~-~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~g~v----~~~~ekp~~~~-------~~ 195 (420)
T 3brk_X 131 ILAGDHI-Y-KMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHV--NEKDEI----IDFIEKPADPP-------GI 195 (420)
T ss_dssp EEESSCE-E-CBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEE--CTTSBE----EEEEESCSSCC-------CB
T ss_pred EecccEE-E-chHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEE--CCCCcE----EEeEeCCCccc-------cc
Confidence 8888883 3 233 256777777888876665553 34456776643 234543 34433221100 00
Q ss_pred CCCCCCCCCccceeeEEEehhhhHHHHh
Q 012230 368 NCETGYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 368 ~~~~g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
.+..+ .+..|+...+|+-+.+.+.++
T Consensus 196 ~~~~~--~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 196 PGNEG--FALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp TTBTT--EEEEEEEEEEEEHHHHHHHHT
T ss_pred ccccc--ceEEeeeeEEEeHHHHHHHHH
Confidence 00001 113589999999887666554
No 15
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=98.47 E-value=1.9e-06 Score=89.64 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=110.8
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gk-s~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++.+. .+.-+++...+.++.+.+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi~---g~~pli~~~l~~l~~~-------------g~~~i~vv~~~~~~~i~~ 83 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS-------------NISKIYVLTQFNSASLNR 83 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEET---TTEETTHHHHHHHHHT-------------TCCEEEEEESCCCHHHHH
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEEC---CcceeHHHHHHHHHHC-------------CCCEEEEEeccCHHHHHH
Confidence 4789999999999998 57899999996 88 9999999998763 233334444556778888
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
++.+. +|.+-. .++.++.+..+... ..+ .-...+.|.|+..... ++.+...+-+++.|.+.|
T Consensus 84 ~~~~~--~~~~~~--~~~~~~~v~i~~~~--------~~~-~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D 145 (451)
T 1yp2_A 84 HLSRA--YASNMG--GYKNEGFVEVLAAQ--------QSP-ENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGD 145 (451)
T ss_dssp HHHHH--CC----------CCEEEEEESC--------SST-TSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSC
T ss_pred HHhhh--hhcccc--cccccCcEEEeccc--------ccc-cccccccCcHHHHHHH-----HHHHHhcCCCeEEEecCc
Confidence 88752 221100 01112222222100 000 0012356877655543 223332345788899888
Q ss_pred CCcccccc-HHHHHHHHhcCCcceEeeeeCC--CCcccccEEEEecCCCceeEEEEecCCcchhHhhc--CCCCCCCCCC
Q 012230 296 NGLLFKAI-PASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRAT--GFPDGDVNCE 370 (468)
Q Consensus 296 N~l~~~~D-p~~lG~~~~~~~~~~~kvv~r~--~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~--~~~~g~l~~~ 370 (468)
.+ .. .| -.++.++.+.++++++-+.+.. +....|.+.. ..+|+. +++.|-+..-... ..+. .+...
T Consensus 146 ~~-~~-~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~~~v----~~~~ekp~~~~~~~~~~~~-~~l~~ 216 (451)
T 1yp2_A 146 HL-YR-MDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGRI----IEFAEKPQGEQLQAMKVDT-TILGL 216 (451)
T ss_dssp EE-CC-CCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEE--CTTSBE----EEEEESCCHHHHHHTCCCG-GGGSC
T ss_pred EE-Ec-CCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEE--CCCCCE----EEEEECCCchhhccccccc-ccccc
Confidence 83 32 34 3677788888888776555432 3456776543 234543 4555544321100 0000 00000
Q ss_pred C----CCCCCccceeeEEEehhhhHHHHhh
Q 012230 371 T----GYSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 371 ~----g~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
. .-..+..|+..++|+-+.+.+.++.
T Consensus 217 ~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 217 DDKRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp CHHHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 0 0001135899999998876666543
No 16
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=98.43 E-value=1.4e-06 Score=84.91 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=107.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||+ ||.++|+. |||++++.++++... .+. ++|-|. ++.+.++++
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i~---GkPli~~~l~~l~~~-------------~i~~VvVvt~---~~~i~~~~~ 66 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDIA---GKPMIQHVYESAIKS-------------GAEEVVIATD---DKRIRQVAE 66 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEET---TEEHHHHHHHHHHHT-------------TCSEEEEEES---CHHHHHHHH
T ss_pred CceEEEEcCCCCCCCC---CCCeeeEC---CchHHHHHHHHHHhC-------------CCCEEEEECC---HHHHHHHHH
Confidence 6899999999999997 89999996 999999999998752 122 345553 588888887
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
+ ||.. +++ . ....|.|.+.+..++.. +...+.+++.+++-|+++
T Consensus 67 ~---~g~~---------------------v~~--~----~~~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pl 110 (256)
T 3tqd_A 67 D---FGAV---------------------VCM--T----SSDHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPL 110 (256)
T ss_dssp H---TTCE---------------------EEE--C----CTTCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCC
T ss_pred H---cCCe---------------------EEE--e----CCCCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCccc
Confidence 5 3432 222 1 11246788887766532 211356789999999987
Q ss_pred cccccH-HHHHHHHhc-CCcceEeeeeCCCCc------ccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCC---CC
Q 012230 299 LFKAIP-ASLGVSATK-QYHVNSLAVPRKAKE------AIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG---DV 367 (468)
Q Consensus 299 ~~~~Dp-~~lG~~~~~-~~~~~~kvv~r~~~e------~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g---~l 367 (468)
....+. .++..+.+. +++++.-+++-+..+ .+++++ .++|+. +.+++-+.-. .++... ..
T Consensus 111 i~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~---d~~g~~----l~fsr~pip~--~r~~~~~~~~~ 181 (256)
T 3tqd_A 111 IPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVL---NRRNYA----LYFSHAPIPW--GRDTFSDKENL 181 (256)
T ss_dssp CCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEE---CTTSBE----EEEESSCSSC--CTTTTTCGGGC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEE---CCCCEE----eEEecCCCCC--CCccccccccc
Confidence 644332 445555543 567777776632211 233332 457763 4555532100 000000 00
Q ss_pred CCCCCCCCCccceeeEEEehhhhHHHH
Q 012230 368 NCETGYSPFPGNINQLILELGPYMEEL 394 (468)
Q Consensus 368 ~~~~g~~~f~gNinn~~~~l~~l~~~l 394 (468)
. ...++ ..|+....|+-+++.+..
T Consensus 182 ~--~~~~~-~~~~GiY~y~~~~l~~~~ 205 (256)
T 3tqd_A 182 Q--LNGSH-YRHVGIYAYRVGFLEEYL 205 (256)
T ss_dssp C--CSSCC-EEEEEEEEEEHHHHHHHH
T ss_pred c--cCCcc-eEEEEEEEcCHHHHHHHH
Confidence 0 01223 369999999988766544
No 17
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=98.41 E-value=1.8e-06 Score=85.37 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=95.1
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~ 215 (468)
++.+|+||||.||||+ .+.||.++|+. |+|++++.++.+... .+. ++|.|+++..+.+.+
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~I~vv~~~~~~~~i~~ 65 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVY---DKPMIYYPLSTLMLA-------------GIREILIISTPQDTPRFQQ 65 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEET---TEETTHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHH
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeEC---CEeHHHHHHHHHHHC-------------CCCEEEEEeccccHHHHHH
Confidence 3568999999999998 36799999996 999999999988652 243 455676777788899
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
++.+...||++ +.+ +. ...|.|.++.+.... +.+ . + +.+.+...|
T Consensus 66 ~l~~g~~~g~~---i~~----------------~~--------~~~~~G~~~al~~a~-----~~i-~-~-~~~~lv~gD 110 (293)
T 1fxo_A 66 LLGDGSNWGLD---LQY----------------AV--------QPSPDGLAQAFLIGE-----SFI-G-N-DLSALVLGD 110 (293)
T ss_dssp HHTTSGGGTCE---EEE----------------EE--------CSSCCCGGGHHHHTH-----HHH-T-T-SEEEEEETT
T ss_pred HHhcccccCce---EEE----------------ee--------CCCCCCHHHHHHHHH-----HHh-C-C-CCEEEEECC
Confidence 98865445542 111 11 113778887665432 222 1 2 345555589
Q ss_pred CCcccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCc
Q 012230 296 NGLLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (468)
Q Consensus 296 N~l~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~ 342 (468)
|++.. .+ -.++-.+.+.+.++++-+++....+++|++.. ..+|+
T Consensus 111 ~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~ 155 (293)
T 1fxo_A 111 NLYYG-HDFHELLGSASQRQTGASVFAYHVLDPERYGVVEF--DQGGK 155 (293)
T ss_dssp EEEEC-TTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEE--CTTSC
T ss_pred hhccC-ccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEE--CCCCc
Confidence 97654 23 25566666556666655555444457776653 23555
No 18
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=98.39 E-value=1.2e-06 Score=86.97 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=104.3
Q ss_pred ceEEEEecCCCCCcCC--c--CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLG--Y--NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG--~--~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
++.+||||||.||||+ . +.||.++|+. .|+|++++.++++... . -.++|.|.....+.+.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~--gg~pli~~~l~~l~~~---~----------~~i~vv~~~~~~~~i~~ 68 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLF--DHKSLFELSFKRNASL---V----------DETLIVCNEKHYFLALE 68 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTB--TTBCHHHHHHHHHHTT---C----------SEEEEEEEGGGHHHHHH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECC--CCCCHHHHHHHHHHcc---C----------CCEEEEEChhHHHHHHH
Confidence 4678999999999996 2 5799999982 2899999999998752 1 13566666555577888
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
++++. ||++ ++.+ +. ...|.|.|+....... .+ ..-.++.|.+.|
T Consensus 69 ~~~~~--~~~~--~~~~----------------i~--------~~~~~gt~~al~~a~~-----~l--~~~~~~lv~~~D 113 (308)
T 2qh5_A 69 EIKNE--IKNK--SVGF----------------LL--------ESLSKNTANAIALSAL-----MS--DKEDLLIVTPSD 113 (308)
T ss_dssp HTTTT--CSSC--EEEE----------------EE--------ESSCCCHHHHHHHHHH-----TS--CTTSEEEEEESS
T ss_pred HHHHh--hCCC--ccEE----------------Ee--------CCCCCChHHHHHHHHH-----Hh--CCCCeEEEEcCC
Confidence 88753 4542 1111 11 1135688877654432 11 122468888888
Q ss_pred CCcccccc-HHHHHH---HHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCC
Q 012230 296 NGLLFKAI-PASLGV---SATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (468)
Q Consensus 296 N~l~~~~D-p~~lG~---~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~ 371 (468)
.+....-+ -.++.. +.+.+.++++.+.+..+....|.+.. ..+|+. +++.|-+..-..+. ... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~--d~~~~V----~~~~Ekp~~~~~~~-----~~~-~ 181 (308)
T 2qh5_A 114 HLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIES--PNGLDV----KRFIEKPSLDKAIE-----FQK-S 181 (308)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEEC--SSSSBC----SEEEESCCHHHHHH-----HHH-H
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEE--CCCCEE----EEEEECCChHHHHH-----Hhh-c
Confidence 86432111 134444 44567777776666556667887642 223442 34444332211110 000 0
Q ss_pred CCCCCccceeeEEEehhhhHHHHh
Q 012230 372 GYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 372 g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
| ++ ..|+...+|+.+.+.+.+.
T Consensus 182 g-~~-~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 182 G-GF-YFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp C-CE-EEEEEEEEEEHHHHHHHHH
T ss_pred C-Ce-EEEeEEEEEEHHHHHHHHH
Confidence 1 11 3499999999877655554
No 19
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=98.35 E-value=5.9e-06 Score=81.88 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=93.0
Q ss_pred eEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHH
Q 012230 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQEL 216 (468)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~ 216 (468)
+.+|+||||.||||+ .+.||.++|+. |+|++++.++.+... .+. ++|.|+.+..+.+.++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~Iivv~~~~~~~~i~~~ 67 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSVLMLA-------------GIRDILIISTPRDLPLYRDL 67 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEET---TEETTHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHHH
T ss_pred eEEEEECCCCCCccccccCCCCceecEEC---CeeHHHHHHHHHHHC-------------CCCeEEEEeccchHHHHHHH
Confidence 568999999999998 46799999996 999999999988752 233 4555666777888898
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
+.+...||++ +.+ +. ...|.|.++.+.... +.+ . +-.++.+. .||
T Consensus 68 l~~g~~~g~~---i~~----------------~~--------~~~~~G~~~al~~a~-----~~i-~-~~~~~lv~-gD~ 112 (295)
T 1lvw_A 68 LGDGSQFGVR---FSY----------------RV--------QEEPRGIADAFIVGK-----DFI-G-DSKVALVL-GDN 112 (295)
T ss_dssp HTTSGGGTSE---EEE----------------EE--------CSSCCCGGGHHHHTH-----HHH-T-TSCEEEEE-TTC
T ss_pred hhhccccCce---EEE----------------ee--------CCCCCChHHHHHHHH-----HHh-C-CCcEEEEE-CCc
Confidence 8764445542 111 11 113678887665432 222 1 22455554 899
Q ss_pred Ccccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCc
Q 012230 297 GLLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (468)
Q Consensus 297 ~l~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~ 342 (468)
++.. .+ ..++-.+.+.+.++++-+++....++.|++.. ..+|+
T Consensus 113 ~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~ 156 (295)
T 1lvw_A 113 VFYG-HRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEF--DSEGR 156 (295)
T ss_dssp CEEC-TTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEE--CTTSB
T ss_pred cccC-cCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEE--CCCCc
Confidence 8754 23 34566665555565554555443456776643 23554
No 20
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=98.33 E-value=3.3e-06 Score=82.28 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=52.3
Q ss_pred eEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
+.+|+||||.||||+. ..||.++|+. |++++++.++++... .+.-++....+..+.+.++|
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------gi~~i~vv~~~~~~~i~~~~ 66 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEA-------------GCEVMAIVTGRNKRSLEDYF 66 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSS---SSBHHHHHHHHHHHH-------------TCCEEEEEECTTHHHHHHHT
T ss_pred eEEEEECCcCCcccCccccCCCcccceEC---CEEHHHHHHHHHHhC-------------CCCEEEEEecCCHHHHHHHH
Confidence 4689999999999986 8899999997 999999999999763 24444555557778999998
Q ss_pred HhC
Q 012230 218 ESN 220 (468)
Q Consensus 218 ~~~ 220 (468)
.+.
T Consensus 67 ~~~ 69 (281)
T 3juk_A 67 DTS 69 (281)
T ss_dssp SCC
T ss_pred hcc
Confidence 764
No 21
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=98.32 E-value=3.8e-06 Score=83.35 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=106.6
Q ss_pred eEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHH
Q 012230 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQEL 216 (468)
Q Consensus 141 vavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~ 216 (468)
+.+|+||||.||||+ .+.||.++|+. |+|++++.++.+... .+. ++|.|+.+..+.+.++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~-------------gi~~I~vv~~~~~~~~i~~~ 67 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIY---DKPMIYYPLSVLMLA-------------GIREILIITTPEDKGYFQRL 67 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEET---TEETTHHHHHHHHHT-------------TCCEEEEEECTTTHHHHHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEEC---CeeHHHHHHHHHHhC-------------CCCcEEEEechhHHHHHHHH
Confidence 568999999999998 47899999996 999999999988752 233 4555666777888898
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCC
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 296 (468)
+.+...||++ +.+ +. ...|.|.++.+.... +.+ . +-.++.+ ..||
T Consensus 68 l~~g~~~g~~---i~~----------------~~--------~~~~~G~~~al~~a~-----~~i-~-~~~~~lv-~gD~ 112 (296)
T 1mc3_A 68 LGDGSEFGIQ---LEY----------------AE--------QPSPDGLAQAFIIGE-----TFL-N-GEPSCLV-LGDN 112 (296)
T ss_dssp HTTSGGGTCE---EEE----------------EE--------CSSCCCSTHHHHHTH-----HHH-T-TSCEEEE-ETTE
T ss_pred HhcccccCce---EEE----------------ec--------cCCCCCHHHHHHHHH-----HHh-C-CCCEEEE-ECCc
Confidence 8765445542 111 11 114678876655432 122 1 2244454 4788
Q ss_pred CccccccHHHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCC
Q 012230 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (468)
Q Consensus 297 ~l~~~~Dp~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f 376 (468)
++....-..++-.+...+.++++-+++....+++|++.. ..+|+ + +.+.|-|. .| -+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~--d~~g~--v--~~~~ekp~------~~---------~s~- 170 (296)
T 1mc3_A 113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEF--DDNFR--A--ISLEEKPK------QP---------KSN- 170 (296)
T ss_dssp EEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEE--ETTEE--E--EECCBSCS------SC---------SCS-
T ss_pred cccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEE--CCCCc--E--EEEEECCC------CC---------CCC-
Confidence 765321135566665555666554555444457887753 23454 2 44434321 01 011
Q ss_pred ccceeeEEEehhhh
Q 012230 377 PGNINQLILELGPY 390 (468)
Q Consensus 377 ~gNinn~~~~l~~l 390 (468)
..|+...+|+-+.+
T Consensus 171 ~~~~Giy~~~~~~l 184 (296)
T 1mc3_A 171 WAVTGLYFYDSKVV 184 (296)
T ss_dssp EEEEEEEECCTHHH
T ss_pred EEEEEEEEEcHHHH
Confidence 24888888887754
No 22
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=98.28 E-value=6.4e-06 Score=78.21 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=82.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+ ||.++|+. |+|++++.++++.... ..-.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i~---g~pli~~~i~~~~~~~-----------~~~~ivvv~~~---~~i~~~~~~ 61 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDIV---GKPMIQHVYERALQVA-----------GVAEVWVATDD---PRVEQAVQA 61 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHTCT-----------TCCEEEEEESC---HHHHHHHHH
T ss_pred CeEEEEEcCCcCCCCC---CCcccccC---CchHHHHHHHHHHhCC-----------CCCeEEEECCc---HHHHHHHHH
Confidence 4678999999999996 99999996 9999999999887521 11245566643 778888875
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+ |.. ++. .. ...+.|.++++.++.. + +-+++.+.+.|.++.
T Consensus 62 ~---~~~---------------------~~~--~~----~~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~ 102 (245)
T 1h7e_A 62 F---GGK---------------------AIM--TR----NDHESGTDRLVEVMHK------V---EADIYINLQGDEPMI 102 (245)
T ss_dssp T---TCE---------------------EEE--CC----SCCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTC
T ss_pred c---CCe---------------------EEe--CC----CccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcC
Confidence 3 321 111 10 1134667777766542 1 347888988888765
Q ss_pred ccccH-HHHHHHHhc-CCcceEeeeeC
Q 012230 300 FKAIP-ASLGVSATK-QYHVNSLAVPR 324 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~-~~~~~~kvv~r 324 (468)
...+. .++..+... ++++++-+++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~~~~~~~~~~ 129 (245)
T 1h7e_A 103 RPRDVETLLQGMRDDPALPVATLCHAI 129 (245)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecC
Confidence 43332 445555556 67776655554
No 23
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=98.25 E-value=6.9e-06 Score=77.33 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=74.3
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+ ||.++|+. |++++++.++++... . -.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i~---g~pli~~~l~~~~~~---~----------~~i~v~~~~---~~i~~~~~~ 59 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNLL---GKPLIRWVVEGLVKT---G----------ERVILATDS---ERVKEVVED 59 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEET---TEEHHHHHHHHHHTT---T----------SCEEEEESC---HHHHHHHTT
T ss_pred ceEEEEEcCCCCCCCC---CCcceeEC---CEEHHHHHHHHHHHh---C----------CEEEEECCh---HHHHHHHHh
Confidence 4678999999999998 99999996 999999999988652 1 134555543 667777753
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+ . . ++. .. ...+.|.|+++.++.. -+-+++.+.+.|.++.
T Consensus 60 ~----~---~------------------~~~--~~----~~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~ 99 (234)
T 2y6p_A 60 L----C---E------------------VFL--TP----SDLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFV 99 (234)
T ss_dssp T----S---E------------------EEE--CC----TTCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCC
T ss_pred c----e---E------------------EEE--CC----cccccchHHHHHHHHh---------CCCCEEEEecCCcCcC
Confidence 1 1 1 111 00 1235778887765532 1347899998888776
Q ss_pred ccccH-HHHHHHHhcC
Q 012230 300 FKAIP-ASLGVSATKQ 314 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~ 314 (468)
...+. .++..+.+.+
T Consensus 100 ~~~~i~~l~~~~~~~~ 115 (234)
T 2y6p_A 100 YEEDIKLIFRELEKGE 115 (234)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhCC
Confidence 43332 4455555555
No 24
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=98.23 E-value=8.6e-06 Score=80.80 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=96.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||+. ||.++|+++ .|++++++.++.+... .+. ++|.|.....+.+.++|.
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig~-~g~pli~~~l~~~~~~-------------~~~~i~vv~~~~~~~~~~~~~~ 68 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIGP-GGDTIMDYSVYDAIRA-------------GFGRLVFVIRHSFEKEFREKIL 68 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCST-TSCCHHHHHHHHHHHH-------------TCCEEEEEECGGGHHHHHHHTH
T ss_pred ceEEEEECCCCcccCCC--CceEeEcCC-CCeeHHHHHHHHHHHC-------------CCCeEEEEcCchHHHHHHHHHH
Confidence 46789999999999985 899999820 2899999999998653 233 455555444589999998
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
+...++. +|.+..|...- + .....+.. ....|.|+|+....... .+ . +.+.|.+-|++
T Consensus 69 ~~~~~~~---~i~~~~~~~~~-~-~~~~~~~~-------~~~~~~Gt~~al~~a~~-----~i--~--~~~lV~~gD~l- 126 (303)
T 3pnn_A 69 TKYEGRI---PVELVFQELDR-L-PEGFSCPE-------GREKPWGTNHAVLMGRD-----AI--R--EPFAVINADDF- 126 (303)
T ss_dssp HHHTTTS---CEEEEECCTTC-C-CTTCCCCT-------TCCSCCCHHHHHHTTTT-----TC--C--SCEEEEESSCB-
T ss_pred HHhccCC---cEEEEeccccc-c-cccccccc-------cccccCCcHHHHHHHHH-----hc--C--CCEEEEECCee-
Confidence 6433332 46666665321 1 01122222 11357899887766533 12 1 23455656663
Q ss_pred ccccc--HHHHHHHHh---cCCcceEeeeeC-CCCcccc----cEEEEecCCCce
Q 012230 299 LFKAI--PASLGVSAT---KQYHVNSLAVPR-KAKEAIG----GITRLTHADGRS 343 (468)
Q Consensus 299 ~~~~D--p~~lG~~~~---~~~~~~~kvv~r-~~~e~~G----~i~~~~~~~g~~ 343 (468)
.. .| -.++-++.+ .++++++-+++. +|-...| +++.+ ..+|+.
T Consensus 127 ~~-~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~-d~~g~v 179 (303)
T 3pnn_A 127 YG-RNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQV-DEKHLL 179 (303)
T ss_dssp CC-HHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEE-CTTSBE
T ss_pred cC-HHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEee-CCCCcE
Confidence 21 22 246677764 567777766653 3424454 34444 335653
No 25
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=98.21 E-value=1.2e-05 Score=83.82 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=108.1
Q ss_pred EEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHhCC
Q 012230 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (468)
Q Consensus 142 avv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~~~ 221 (468)
.+|+||||.||||+.+.||.++|+. |++++++.++++.+. .+.-++....+..+.+.+++.+
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------g~~~iivv~~~~~~~i~~~~~~-- 74 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVLHKVA---GISMLEHVFRSVGAI-------------QPEKTVTVVGHKAELVEEVLAG-- 74 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHTT-------------CCSEEEEEECTTHHHHHHSSSS--
T ss_pred cEEEEcCCCCccCCCCCCcEeeEEC---CccHHHHHHHHHHhc-------------CCCCEEEEECCCHHHHHHHhCC--
Confidence 4789999999999988899999996 999999999988652 2333344444445666555432
Q ss_pred CCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcccc
Q 012230 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (468)
Q Consensus 222 ~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~~~ 301 (468)
.+ +. +. + ..+.|.++..... ++.+. ..-+++.+.+.|.++...
T Consensus 75 -------~i--------~~--------v~--~------~~~~G~~~sl~~a-----~~~~~-~~~~~vlv~~~D~P~i~~ 117 (468)
T 1hm9_A 75 -------QT--------EF--------VT--Q------SEQLGTGHAVMMT-----EPILE-GLSGHTLVIAGDTPLITG 117 (468)
T ss_dssp -------SS--------EE--------EE--C------SSCCCHHHHHHTT-----HHHHT-TCCSEEEEEETTCTTCCH
T ss_pred -------Cc--------EE--------Ee--C------CccCChHHHHHHH-----HHHhc-cCCCeEEEEeCCccccCH
Confidence 11 11 11 1 1245666554432 22332 224789999999976544
Q ss_pred ccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCccce
Q 012230 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (468)
Q Consensus 302 ~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~gNi 380 (468)
.+. .++-.+.+.++++++-+.+.......|.+.. ..+|+. +++.|-+.. .+ ... . .+..|+
T Consensus 118 ~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~-----~~-~~~-----~-~~~~~~ 179 (468)
T 1hm9_A 118 ESLKNLIDFHINHKNVATILTAETDNPFGYGRIVR--NDNAEV----LRIVEQKDA-----TD-FEK-----Q-IKEINT 179 (468)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCE----EEEECTTTC-----CT-TGG-----G-CCEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEE--CCCCCE----EEEEECCCC-----Ch-HHh-----c-CeEEEE
Confidence 332 4566677778888777666555556776543 234542 344332210 00 000 0 113588
Q ss_pred eeEEEehhhhHHHHh
Q 012230 381 NQLILELGPYMEELK 395 (468)
Q Consensus 381 nn~~~~l~~l~~~l~ 395 (468)
...+|+-+.+.+.++
T Consensus 180 Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 180 GTYVFDNERLFEALK 194 (468)
T ss_dssp EEEEEEHHHHHHHHT
T ss_pred EEEEEEHHHHHHHHH
Confidence 888899876666654
No 26
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=98.17 E-value=2.2e-05 Score=81.36 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=102.4
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||+.+.||.++|+. |+|++++.++++... .+. ++|.|. +..+.+.+++.
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---gkpli~~~l~~l~~~-------------~~~~iivv~~-~~~~~i~~~~~ 67 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVLHTIA---GKPMVKHVIDTAHQL-------------GSENIHLIYG-HGGDLMRTHLA 67 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGGSEET---TEEHHHHHHHHHHHT-------------TCSCEEEEEC-TTHHHHHHHTT
T ss_pred cceEEEECCCCCcccCCCCCccccEEC---CccHHHHHHHHHHhC-------------CCCcEEEEeC-CCHHHHHHHhh
Confidence 578899999999999977899999996 999999999998763 133 445554 45577777765
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
++ + +.+ +. + ..+.|.++....... .+. .-+++++.+.|.++
T Consensus 68 ~~---~-----~~~----------------v~--~------~~~~g~~~~~~~~~~-----~~~--~~~~vlv~~~D~P~ 108 (456)
T 2v0h_A 68 NE---Q-----VNW----------------VL--Q------TEQLGTAHAVQQAAP-----FFK--DNENIVVLYGDAPL 108 (456)
T ss_dssp TC---C-----CEE----------------EE--C------SCCCCHHHHHHHHGG-----GCC--TTSEEEEEETTCTT
T ss_pred cC---C-----cEE----------------Ee--C------CCCCCcHHHHHHHHH-----hcC--CCCeEEEEcCCcce
Confidence 42 1 111 11 1 124555543333221 121 14789999999976
Q ss_pred cccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCc
Q 012230 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (468)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~ 377 (468)
....+. .++..+.+ .++++-+++.......|.+.. . +|+.. ..+|..+..+... . .+.
T Consensus 109 i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~--~-~g~v~-~~~ek~~~~~~~~--------------~-~~~ 167 (456)
T 2v0h_A 109 ITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIR--E-NGNVV-AIVEQKDANAEQL--------------N-IKE 167 (456)
T ss_dssp CCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEE--E-TTEEE-EEECTTTCCHHHH--------------T-CCE
T ss_pred eCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEE--c-CCcEE-EEEECCCCChhHh--------------c-CcE
Confidence 543332 33333322 455555555333344665543 1 55431 1134332221110 0 113
Q ss_pred cceeeEEEehhhhHHHHh
Q 012230 378 GNINQLILELGPYMEELK 395 (468)
Q Consensus 378 gNinn~~~~l~~l~~~l~ 395 (468)
.|+..+.|+.+.+.+.++
T Consensus 168 ~~~Giy~~~~~~l~~~l~ 185 (456)
T 2v0h_A 168 VNTGVMVSDGASFKKWLA 185 (456)
T ss_dssp EEEEEEEEEHHHHHHHHT
T ss_pred EEEEEEEEEHHHHHHHHH
Confidence 488888888876666654
No 27
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=98.15 E-value=7.2e-06 Score=82.78 Aligned_cols=192 Identities=17% Similarity=0.134 Sum_probs=108.2
Q ss_pred eEEEEecCCCCCcCC----cCCCcccCCccCCCC-cchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHH
Q 012230 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQ 214 (468)
Q Consensus 141 vavv~LaGG~GTRLG----~~~pK~~lP~~~~~g-ks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~ 214 (468)
+.+|+||||.||||+ ...||.++|+. | +|++|+.++++.... .+ .++|.|.....+.+.
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---g~~pli~~~l~~l~~~~------------~~~~iivvt~~~~~~~i~ 66 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLF---GNKSLMRWTFERVLEEM------------DPKDVIVVTHKDYVERTK 66 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCB---TTBCHHHHHHHHHHTTC------------CGGGEEEEEEGGGHHHHH
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECC---CCCcHHHHHHHHHhccC------------CCCcEEEEcChHHHHHHH
Confidence 457899999999997 45899999996 7 999999999987531 12 345666554445666
Q ss_pred HHHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEec
Q 012230 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (468)
Q Consensus 215 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~v 294 (468)
+++.+.. .. .++. ...|.|.|+....... .+ .+-+++.|.+.
T Consensus 67 ~~l~~~~-----~~------------------~ii~--------e~~~~gta~ai~~a~~-----~~--~~~~~~lvl~~ 108 (336)
T 2x65_A 67 KELPELP-----DE------------------NIIA--------EPMKKNTAPACFIGTK-----LA--DDDEPVLVLPA 108 (336)
T ss_dssp HHCTTSC-----GG------------------GEEE--------ESSCCCHHHHHHHHHT-----TS--CTTCEEEEEET
T ss_pred HHhhccc-----cc------------------eEEe--------CCCCCCcHHHHHHHHH-----hh--CCCCEEEEEcC
Confidence 6665421 00 1222 1135577776554322 11 12367888888
Q ss_pred CCCccccccH-----HHHHHHHhcCCcceEeeeeCCCCcccccEEEEec-CCCceeEEEEecCCcchhHhhcC-CCCCCC
Q 012230 295 TNGLLFKAIP-----ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATG-FPDGDV 367 (468)
Q Consensus 295 DN~l~~~~Dp-----~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~-~~g~~~v~~VEYsel~~~l~~~~-~~~g~l 367 (468)
|.+.....+- .++-++.+.+..+++-+.+..|...+|.+..-.. .++-..| ..+.|-|..-..+. ...|.
T Consensus 109 D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V--~~f~EKp~~~~a~~~~~~g~- 185 (336)
T 2x65_A 109 DHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKV--AQFREKPDLETAKKFVESGR- 185 (336)
T ss_dssp TCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEE--EEEEESCCHHHHHHHHHHTC-
T ss_pred CceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEE--EEEEECCChHHHHHHHhcCC-
Confidence 8865432111 1223344446666666666667777887753110 0111222 44444443321110 00111
Q ss_pred CCCCCCCCCccceeeEEEehhhhHHHHhh
Q 012230 368 NCETGYSPFPGNINQLILELGPYMEELKK 396 (468)
Q Consensus 368 ~~~~g~~~f~gNinn~~~~l~~l~~~l~~ 396 (468)
| + -|+..+.|+.+.+.+.+++
T Consensus 186 -----y-~--~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 186 -----F-L--WNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp -----E-E--EEEEEEEEEHHHHHHHHHH
T ss_pred -----e-E--EEeeeEEEEHHHHHHHHHH
Confidence 2 2 4999999998877555543
No 28
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=98.13 E-value=1.4e-05 Score=75.12 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=46.3
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||| ||.++|+. |+|++++.++++.... .+ .++|.|. ++.+.++++
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i~---gkpll~~~l~~~~~~~------------~~~~ivvv~~---~~~i~~~~~ 62 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKMN---GISLLGHTINAAISSK------------CFDRIIVSTD---GGLIAEEAK 62 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEET---TEEHHHHHHHHHHHHC------------CCSEEEEEES---CHHHHHHHH
T ss_pred ceEEEEecCCCCCCCC---CcccceeC---CcCHHHHHHHHHHhCC------------CCCEEEEECC---CHHHHHHHH
Confidence 5788999999999998 99999996 9999999999987631 12 3455553 466777776
Q ss_pred h
Q 012230 219 S 219 (468)
Q Consensus 219 ~ 219 (468)
+
T Consensus 63 ~ 63 (228)
T 1ezi_A 63 N 63 (228)
T ss_dssp H
T ss_pred H
Confidence 5
No 29
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=98.10 E-value=2.8e-05 Score=80.56 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=104.9
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+.+.||.++|+. |+|++++.++++.... .-.++|.|.. .++.+.+++++
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---g~pli~~~l~~l~~~~------------~~~i~vv~~~-~~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPLA---GKPMVQHVIDAAMKLG------------AQHVHLVYGH-GGELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHHHT------------CSCEEEEESS-CHHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCcccCeeC---CeeHHHHHHHHHHhCC------------CCcEEEEeCC-CHHHHHHHhcc
Confidence 689999999999999988999999996 9999999999987642 1234555544 47778877764
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChh-HhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~-i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
. ++ . ++. + ..+.|.++ ++.++.. +. +-+++.+...|.++
T Consensus 72 ~---~~-----~----------------~v~--~------~~~~g~~~~i~~~~~~------~~--~~~~~lv~~~D~P~ 111 (459)
T 4fce_A 72 P---SL-----N----------------WVL--Q------AEQLGTGHAMQQAAPH------FA--DDEDILMLYGDVPL 111 (459)
T ss_dssp -----------C----------------EEE--C------SSCCCHHHHHHHHGGG------SC--TTSEEEEEETTCTT
T ss_pred C---Cc-----E----------------EEe--C------CCCCCcHHHHHHHHHh------cC--CCCcEEEEeCCccc
Confidence 2 11 1 111 1 12345544 4444322 21 34789999888876
Q ss_pred cccccH-HHHHHHHhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCCCCCCCc
Q 012230 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (468)
Q Consensus 299 ~~~~Dp-~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~g~~~f~ 377 (468)
....+. .++-.+ .+.+++.-+++.......|.+..- +|+. .++.|-+... + .. ..+. .
T Consensus 112 i~~~~i~~l~~~~--~~~~~~~~~~~~~~~~~~g~v~~~---~g~v----~~~~ek~~~~-----~-~~-----~~~~-~ 170 (459)
T 4fce_A 112 ISVDTLQRLLAAK--PEGGIGLLTVKLDNPSGYGRIVRE---NGDV----VGIVEHKDAS-----D-AQ-----REIN-E 170 (459)
T ss_dssp CCHHHHHHHHHHC--CTTSEEEEEEECSCCTTSCEEEEE---TTEE----EEEECGGGCC-----T-TG-----GGCC-E
T ss_pred CCHHHHHHHHHHH--hhCCEEEEEEecCCCCcccEEEeC---CCcE----EEEEECCCCC-----h-HH-----hhcc-E
Confidence 533322 233332 235566666665444567766532 5643 3333322110 0 00 0111 3
Q ss_pred cceeeEEEehhhhHHHHhh
Q 012230 378 GNINQLILELGPYMEELKK 396 (468)
Q Consensus 378 gNinn~~~~l~~l~~~l~~ 396 (468)
.|+...+|+-+.+.+.++.
T Consensus 171 ~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 171 INTGILVANGRDLKRWLSL 189 (459)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEEEEHHHHHHHHHH
Confidence 4888899998877666543
No 30
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=98.02 E-value=2.8e-05 Score=74.46 Aligned_cols=127 Identities=12% Similarity=0.147 Sum_probs=72.6
Q ss_pred ceEEEEecCCCCCcCCc-CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~-~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~ 217 (468)
++.+|+||||.|||||. +.||.++|+. |+|++++.++.+... ..+ .++|.|+....+.+.+.+
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l~---Gkpll~~~l~~~~~~------------~~~~~ivvv~~~~~~~~~~~~~ 67 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPLN---GKPIIVHTVEKFILN------------TRFDKILISSPKEWMNHAEDNI 67 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEET---TEEHHHHHHHHHHTC------------TTCSEEEEEECGGGHHHHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeEEEEC---CeeHHHHHHHHHHcC------------CCCCEEEEEeCHHHHHHHHHHH
Confidence 46899999999999998 7899999996 999999999988642 113 355666655444566666
Q ss_pred HhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHH----CCceEEEEEe
Q 012230 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD----AGLKWVLFFQ 293 (468)
Q Consensus 218 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~----~G~~yi~v~~ 293 (468)
+++.. +. .+.+ +. .| ... .++++.+|. .+.. .+.+++.|..
T Consensus 68 ~~~~~---~~-~~~~--------~~--~~--------~~~-------~~sv~~al~------~l~~~~~~~~~~~vlv~~ 112 (246)
T 3f1c_A 68 KKYIS---DD-RIVV--------IE--GG--------EDR-------NETIMNGIR------FVEKTYGLTDDDIIVTHD 112 (246)
T ss_dssp HHHCC---CT-TEEE--------EE--CC--------SSH-------HHHHHHHHH------HHHHHTCCCTTCEEEEEE
T ss_pred HHhCC---CC-CEEE--------EC--CC--------Cch-------HHHHHHHHH------HHhhhhcCCCCCEEEEec
Confidence 65421 11 1111 10 00 000 134566553 3433 1357999998
Q ss_pred cCCCccccccH-HHHHHHHhcCCc
Q 012230 294 DTNGLLFKAIP-ASLGVSATKQYH 316 (468)
Q Consensus 294 vDN~l~~~~Dp-~~lG~~~~~~~~ 316 (468)
.|.++....+. .++..+...++.
T Consensus 113 ~d~Pli~~~~i~~li~~~~~~~a~ 136 (246)
T 3f1c_A 113 AVRPFLTHRIIEENIDAALETGAV 136 (246)
T ss_dssp TTCTTCCHHHHHHHHHHHHHTSEE
T ss_pred CcccCCCHHHHHHHHHHHHhcCCE
Confidence 88887654332 455555555543
No 31
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=97.97 E-value=6.3e-05 Score=71.06 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=80.2
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+ +|.++|+. |+|++++.++++.+.. .--.++|-| .++.+.+++++
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i~---Gkpli~~~i~~~~~~~-----------~~~~ivv~~---~~~~i~~~~~~ 62 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRLA---GVPLIGWVLRAALDAG-----------VFQSVWVST---DHDEIENVAKQ 62 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEET---TEEHHHHHHHHHHHHT-----------CCSEEEEEE---SCHHHHHHHHH
T ss_pred cEEEEEEcCCCCCCCC---CcccceEC---CEEHHHHHHHHHHhCC-----------CcCEEEEEC---ChHHHHHHHHH
Confidence 5788999999999996 59999996 9999999999987642 111345555 35778888865
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+ |.. ++.+ ........+.|.+.+..++.. + .+.+++.+.+.|+++.
T Consensus 63 ~---g~~-----~~~~------------------~~~~~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli 108 (229)
T 1qwj_A 63 F---GAQ-----VHRR------------------SSETSKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCL 108 (229)
T ss_dssp T---TCE-----EEEC------------------CGGGSSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTC
T ss_pred c---CCE-----EEeC------------------hhhhcCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcC
Confidence 2 431 1110 000001123344555555533 1 2457899999999876
Q ss_pred ccccH-HHHHHHHhcCCcceEeee
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAV 322 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv 322 (468)
...+. .++..+...++++.+-++
T Consensus 109 ~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 109 HPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp CHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEe
Confidence 44332 455566666777655554
No 32
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=97.96 E-value=3e-05 Score=76.32 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=49.6
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQE 215 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~ 215 (468)
.+.+|+||||.||||+. +.||.++|+. |+|++++.++++... .+. ++|.| ++..+.+.+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------gi~~i~vv~-~~~~~~i~~ 70 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA-------------GITEIVLVT-HSSKNSIEN 70 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEE-CGGGHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEEC---CeEHHHHHHHHHHHC-------------CCCEEEEEe-CCCHHHHHH
Confidence 46789999999999985 6799999996 999999999998752 233 34444 445788888
Q ss_pred HHHh
Q 012230 216 LLES 219 (468)
Q Consensus 216 ~~~~ 219 (468)
++.+
T Consensus 71 ~~~~ 74 (302)
T 2e3d_A 71 HFDT 74 (302)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 8864
No 33
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=97.93 E-value=4.2e-05 Score=73.72 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=80.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHHHh
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~~~ 219 (468)
++.+|+||||.||||+ +|.++|+. |+|++++.++++.... . -.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~~---gkpli~~~l~~l~~~~-----------~-~~ivvv~~~---~~i~~~~~~ 60 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADIK---GKPMIQHVFEKALQSG-----------A-SRVIIATDN---ENVADVAKS 60 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT-----------C-SEEEEEESC---HHHHHHHHH
T ss_pred CcEEEEEcCCCCCCCC---CCccccCC---CeEHHHHHHHHHHhCC-----------C-ceEEEECCc---HHHHHHHHh
Confidence 4678999999999996 59999996 9999999999987631 1 235555542 567777765
Q ss_pred CCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCcc
Q 012230 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (468)
Q Consensus 220 ~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l~ 299 (468)
+|.. ++. . + ...|.|.|.+..++ +.+...+-+++.+.+.|.++.
T Consensus 61 ---~~~~---------------------~~~--~-~---~~~~~g~~~~~~~~------~~l~~~~~~~vlv~~~D~P~i 104 (262)
T 1vic_A 61 ---FGAE---------------------VCM--T-S---VNHNSGTERLAEVV------EKLAIPDNEIIVNIQGDEPLI 104 (262)
T ss_dssp ---TTCE---------------------EEE--C-C---CSSCCHHHHHHHHH------HHTTCCTTCEEEECCTTCTTC
T ss_pred ---cCCE---------------------EEE--C-C---ccccCChHHHHHHH------HHhccCCCCEEEEEeCCcCcc
Confidence 2321 111 1 0 12345666433332 222222457899998888765
Q ss_pred ccccH-HHHHHHHhcCCcceEeeeeC
Q 012230 300 FKAIP-ASLGVSATKQYHVNSLAVPR 324 (468)
Q Consensus 300 ~~~Dp-~~lG~~~~~~~~~~~kvv~r 324 (468)
...+- .++..+...+++++.-+++.
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 105 PPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 44332 45566666677777666664
No 34
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=97.90 E-value=5.5e-05 Score=70.95 Aligned_cols=64 Identities=25% Similarity=0.264 Sum_probs=40.5
Q ss_pred eEEEEecCCCCCcCCc-CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 141 vavv~LaGG~GTRLG~-~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
+.+|+||||.|||||. +.||.++|+. |+|++++.++++... ..+ .++|.|.....+.+.++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~---g~pli~~~l~~l~~~------------~~~~~i~vv~~~~~~~~~~~~~~ 67 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELG---DRPILIHTIEKFVLE------------PSIEKIVVGVHGDWVSHAEDLVD 67 (236)
T ss_dssp EEEEEEEC-----------CGGGSEET---TEEHHHHHHHHHHTC------------TTCCCEEEEECGGGHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeC---CccHHHHHHHHHHcC------------CCCCeEEEEeCHHHHHHHHHHHH
Confidence 5689999999999985 6699999996 999999999988652 113 4566665554477888886
Q ss_pred h
Q 012230 219 S 219 (468)
Q Consensus 219 ~ 219 (468)
+
T Consensus 68 ~ 68 (236)
T 2vsh_A 68 K 68 (236)
T ss_dssp H
T ss_pred h
Confidence 5
No 35
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.90 E-value=1e-05 Score=80.87 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=47.6
Q ss_pred eEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
+.+||||||.||||+. +.||.++|+. |+|++++.++++... .+.-+++..++..+.+.+++
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------gi~~iivv~~~~~~~i~~~~ 76 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAEL-------------GATRLAIITAPNKAGVLAHF 76 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEECTTCHHHHHTT
T ss_pred eEEEEECCCCccccCccccCCCceeeeEC---CEEHHHHHHHHHHhC-------------CCCEEEEEecCcHHHHHHHH
Confidence 6789999999999975 6799999996 999999999998752 24333444445567777776
Q ss_pred H
Q 012230 218 E 218 (468)
Q Consensus 218 ~ 218 (468)
.
T Consensus 77 ~ 77 (323)
T 2pa4_A 77 E 77 (323)
T ss_dssp S
T ss_pred h
Confidence 4
No 36
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=97.84 E-value=7.2e-05 Score=72.50 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=103.1
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHH-HHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYI-ECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~-~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~~~ 218 (468)
..+|+||||.||||+ +|.++|+. |+|++++.+ +++... .+- ++|-|. ++.+.++++
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i~---GkPli~~~i~~~~~~~-------------~~~~vvVvt~---~~~i~~~~~ 59 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLIH---DRPMILRVVDQAKKVE-------------GFDDLCVATD---DERIAEICR 59 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEET---TEEHHHHHHHHHHTCT-------------TCCEEEEEES---CHHHHHHHH
T ss_pred eEEEEEeCCCCCCCC---CCceeeEC---CeEhHHHHHHHHHHhc-------------CCCEEEEECC---HHHHHHHHH
Confidence 468999999999997 59999996 999999999 887541 232 455553 478888876
Q ss_pred hCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecCCCc
Q 012230 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (468)
Q Consensus 219 ~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~l 298 (468)
+ ||.. +++ .. ...+.|.+.+..++. .+...+.+++.+++-|+++
T Consensus 60 ~---~g~~---------------------v~~--~~----~~~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~Pl 103 (253)
T 4fcu_A 60 A---EGVD---------------------VVL--TS----ADHPSGTDRLSEVAR------IKGWDADDIIVNVQGDEPL 103 (253)
T ss_dssp T---TTCC---------------------EEE--CC----TTCCCHHHHHHHHHH------HHTCCTTCEEEECCTTCTT
T ss_pred H---cCCe---------------------EEE--eC----CCCCChHHHHHHHHH------hcCcCCCCEEEEEeCCccc
Confidence 4 3432 222 00 113456665665543 2322245789999999987
Q ss_pred cccccH-HHHHHHHhc-CCcceEeeeeC-------CCCcccccEEEEecCCCceeEEEEecCC--cchhHhhcCCCCCCC
Q 012230 299 LFKAIP-ASLGVSATK-QYHVNSLAVPR-------KAKEAIGGITRLTHADGRSMVINVEYNQ--LDPLLRATGFPDGDV 367 (468)
Q Consensus 299 ~~~~Dp-~~lG~~~~~-~~~~~~kvv~r-------~~~e~~G~i~~~~~~~g~~~v~~VEYse--l~~~l~~~~~~~g~l 367 (468)
....+- .++..+.+. +..++.-+++- +|+. +++++ ..+|+. +-+++ ++.. +.....+...
T Consensus 104 i~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~---d~~g~~----l~fsr~~ip~~-r~~~~~~~~~ 174 (253)
T 4fcu_A 104 LPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVVM---SKQNEA----LYFSRATIPYD-RDGAKRDEPT 174 (253)
T ss_dssp CCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEEE---CTTSBE----EEEESSCCSCC-TTTSSSSSCC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEEE---CCCCeE----EEecCCCCCCC-CCcccccccc
Confidence 644332 345555554 45555555542 2322 33322 456763 33444 3211 0000000000
Q ss_pred CCCCCCCCCccceeeEEEehhhhHHHH
Q 012230 368 NCETGYSPFPGNINQLILELGPYMEEL 394 (468)
Q Consensus 368 ~~~~g~~~f~gNinn~~~~l~~l~~~l 394 (468)
. ...+ ..|+....|+-+++.+..
T Consensus 175 ~---~~~~-~~~~GiY~f~~~~l~~~~ 197 (253)
T 4fcu_A 175 L---HTQA-FRHLGLYAYRVSLLQEYV 197 (253)
T ss_dssp C---CSCC-EEEEEEEEEEHHHHHHHT
T ss_pred c---ccce-eEEEEEEEeCHHHHHHHH
Confidence 0 0112 349999999998776654
No 37
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=97.82 E-value=4.8e-05 Score=74.78 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=49.9
Q ss_pred ceEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~ 216 (468)
.+.+|+||||.||||+. ..||.++|+. |+|++++.++++... .+.-++....+..+.+.++
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~-------------g~~~i~vv~~~~~~~i~~~ 77 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEA-------------GIEQMIFVTGRGKSALEDH 77 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEECTTCHHHHHH
T ss_pred ccEEEEECCCCccccCccccCCCceeeeEC---CeEHHHHHHHHHHhC-------------CCCEEEEEeCCCHHHHHHH
Confidence 57889999999999975 6799999996 999999999998752 2333344444557888888
Q ss_pred HHh
Q 012230 217 LES 219 (468)
Q Consensus 217 ~~~ 219 (468)
+.+
T Consensus 78 ~~~ 80 (297)
T 2ux8_A 78 FDI 80 (297)
T ss_dssp TSC
T ss_pred Hhh
Confidence 764
No 38
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=97.80 E-value=2.3e-05 Score=74.87 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=87.3
Q ss_pred eEEEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccC-EEEEcCccchHHHHHH
Q 012230 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQEL 216 (468)
Q Consensus 141 vavv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip-~~IMtS~~t~~~t~~~ 216 (468)
+.+|+||||.||||+. +.||.++|+. |+|++++.++++.+. .+. ++|.|+ +.++.+.++
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~---gkpli~~~l~~l~~~-------------g~~~i~vv~~-~~~~~i~~~ 65 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIG---GKPILWHIMKMYSVH-------------GIKDFIICCG-YKGYVIKEY 65 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEEC-TTHHHHHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcc-cCHHHHHHH
Confidence 5689999999999986 6799999996 999999999988763 233 455554 456889999
Q ss_pred HHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCcc----ccccCCChhHhHHHhhcChhHHHHHCCceEEEEE
Q 012230 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (468)
Q Consensus 217 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i----~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~ 292 (468)
+.++..++ ..+.+..|+. .+. ++-....++.+ ...+.|+|+....... .+. +-+++.+.
T Consensus 66 ~~~~~~~~---~~~~~~~~~~--~~~-----~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~-----~~~--~~~~~lv~ 128 (259)
T 1tzf_A 66 FANYFLHM---SDVTFHMAEN--RME-----VHHKRVEPWNVTLVDTGDSSMTGGRLKRVAE-----YVK--DDEAFLFT 128 (259)
T ss_dssp HHTHHHHH---SCEEEEGGGT--EEE-----ETTCCCCCCEEEEEECCSSCCHHHHHHHTGG-----GTT--TSSCEEEE
T ss_pred Hhhccccc---cccccccccc--cee-----eeeccccccceeeeecccccCcHHHHHHHHH-----hcC--CCCcEEEE
Confidence 97632100 1233322321 000 00000011111 1246788887665432 121 23567788
Q ss_pred ecCCCcccccc-HHHHHHHHhcCCcceEeeeeCCCCcccccEEE
Q 012230 293 QDTNGLLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITR 335 (468)
Q Consensus 293 ~vDN~l~~~~D-p~~lG~~~~~~~~~~~kvv~r~~~e~~G~i~~ 335 (468)
+-|++ . ..| -.++.++...++++++..+ .+...+|.+..
T Consensus 129 ~~D~~-~-~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~g~v~~ 168 (259)
T 1tzf_A 129 YGDGV-A-DLDIKATIDFHKAHGKKATLTAT--FPPGRFGALDI 168 (259)
T ss_dssp ETTEE-E-CCCHHHHHHHHHHHCCSEEEEEE--CCCCCSEEEEE
T ss_pred ECCEe-c-ccCHHHHHHHHHHhCCeEEEEEe--cCCCCccEEEE
Confidence 77873 2 233 2567777777777654332 34456776543
No 39
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=97.72 E-value=3.2e-05 Score=70.50 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=45.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||| .||.++|+. |+|++++.++++... .+ .++|.|.. ..+.+.+++.
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pll~~~l~~l~~~-------------~~~~i~vv~~~-~~~~~~~~~~ 65 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPYR---DTTVLGATLDVARQA-------------GFDQLILTLGG-AASAVRAAMA 65 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEET---TEEHHHHHHHHHHHT-------------TCSEEEEEECT-THHHHHHHSC
T ss_pred ceEEEEECCCCcccCC--CCeEcCeeC---CccHHHHHHHHHHhc-------------CCCcEEEEeCC-CHHHHHHHhc
Confidence 5788999999999997 799999996 999999999988753 13 34555544 4566666554
No 40
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=97.70 E-value=0.0001 Score=74.30 Aligned_cols=191 Identities=15% Similarity=0.100 Sum_probs=103.1
Q ss_pred eEEEEecCCCCCcCC----cCCCcccCCccCCCC-cchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHH
Q 012230 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (468)
Q Consensus 141 vavv~LaGG~GTRLG----~~~pK~~lP~~~~~g-ks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~ 215 (468)
+.+|+||||.||||. ...||.++|+. | +|++|+.++++.... | .-.++|.|.....+.+.+
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---G~~pli~~~l~~l~~~~--------~---~~~iiVvt~~~~~~~i~~ 68 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLF---EGKTLLEATLERLAPLV--------P---PERTLLAVRRDQEAVARP 68 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCG---GGCBHHHHHHHHHTTTS--------C---GGGEEEEEEGGGHHHHGG
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcC---CCChHHHHHHHHHhCcC--------C---CCCEEEEcChHHHHHHHH
Confidence 578999999999996 46799999996 7 999999999986531 0 113455555432333333
Q ss_pred HHHhCCCCCCCCCcEEEEecCceeeeecCCCceeccCCCCCccccccCCChhHhHHHhhcChhHHHHHCCceEEEEEecC
Q 012230 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (468)
Q Consensus 216 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~~gki~l~~~~~~~i~~~P~G~G~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 295 (468)
++.+ ++ ++. + ..|.|+|........ +... .+-+++.|.+.|
T Consensus 69 ~l~~------------------~~--------~i~--e------~~~~gta~ai~~a~~---l~~~--~~~~~~lvl~~D 109 (337)
T 2cu2_A 69 YADG------------------IR--------LLL--E------PLGRDTAGAVLLGVA---EALK--EGAERLLVLPAD 109 (337)
T ss_dssp GCSS------------------SE--------EEE--E------SSCCHHHHHHHHHHH---HHHH--HTCSEEEEEESS
T ss_pred Hhcc------------------Cc--------eEe--c------CCCCCcHHHHHHHHH---Hhcc--CCCCEEEEEECC
Confidence 3221 01 012 1 135677765544322 2221 134688889888
Q ss_pred CCccccccH-HHHHHH---HhcCCcceEeeeeCCCCcccccEEEEecCCCceeEEEEecCCcchhHhhcCCCCCCCCCCC
Q 012230 296 NGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (468)
Q Consensus 296 N~l~~~~Dp-~~lG~~---~~~~~~~~~kvv~r~~~e~~G~i~~~~~~~g~~~v~~VEYsel~~~l~~~~~~~g~l~~~~ 371 (468)
.+.....+- ..+.-. ...+..+++-+.+..|...+|.+..-...++-..| ..+.|-|..-..+. .+. .
T Consensus 110 ~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~~~~~~~~~~V--~~f~EKp~~~~a~~----~~~--~ 181 (337)
T 2cu2_A 110 HYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRG--EGFVEKPSYAEALE----YIR--K 181 (337)
T ss_dssp CEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEE--EEEECCCCHHHHHH----HHH--T
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEECCcccccCeE--EEEEeCCChHHHHH----Hhh--c
Confidence 865422110 112211 12356666666666677788977532100010222 44555443321110 000 1
Q ss_pred CCCCCccceeeEEEehhhhHHHHh
Q 012230 372 GYSPFPGNINQLILELGPYMEELK 395 (468)
Q Consensus 372 g~~~f~gNinn~~~~l~~l~~~l~ 395 (468)
|| .-|+..++|+.+.+.+.++
T Consensus 182 g~---~~n~Giy~f~~~~ll~~l~ 202 (337)
T 2cu2_A 182 GY---VWNGGVFAFAPATMAELFR 202 (337)
T ss_dssp TC---EEEEEEEEECHHHHHHHHH
T ss_pred CC---EEEEEEEEEeHHHHHHHHH
Confidence 21 2499999999887755554
No 41
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=97.70 E-value=2.8e-05 Score=72.93 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=31.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++..
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i~---g~pli~~~l~~l~~ 44 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSR 44 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEET---TEEHHHHHHHHHHH
T ss_pred ceEEEEECCccccccCCCCCccEeEEC---CEEHHHHHHHHHHc
Confidence 578999999999999977899999996 99999999998875
No 42
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=97.69 E-value=3.2e-05 Score=70.53 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=45.6
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.||||| .||.++|+. |++++++.++++... .+ .++|.|+ +.++.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pli~~~l~~l~~~-------------~~~~i~vv~~-~~~~~~~~~~~ 65 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPLG---DTTLLGATLAMARRC-------------PFDQLIVTLG-GAADEVLEKVE 65 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEET---TEEHHHHHHHHHHTS-------------SCSEEEEEEC-TTHHHHHHHSC
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEeC---ccCHHHHHHHHHHhC-------------CCCcEEEEeC-CCHHHHHHHhc
Confidence 5789999999999998 699999996 999999999988642 23 3455554 44566666554
No 43
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=97.67 E-value=5.3e-05 Score=70.57 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=37.6
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l 184 (468)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++...
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~~---g~pli~~~l~~l~~~ 43 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTLG---GTPLLEHALSGLRAS 43 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEET---TEEHHHHHHHHHHHH
T ss_pred ceEEEEECCccCcccCCCCCCeeeEEC---CeEHHHHHHHHHhcC
Confidence 467899999999999977899999996 999999999998763
No 44
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=97.67 E-value=2.8e-05 Score=72.93 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++..
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~l~~~~---gkpli~~~l~~l~~ 46 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQYVEIG---SKTVLEHVLGIFER 46 (231)
T ss_dssp CEEEEEECC----------CCSCCEET---TEEHHHHHHHHHHT
T ss_pred ceEEEEEcccccccCCCCCCceEeEEC---CeEHHHHHHHHHHc
Confidence 578999999999999977799999996 99999999998875
No 45
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=97.63 E-value=7.3e-05 Score=71.52 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=49.8
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~ 218 (468)
++.+|+||||.|||||.+.||.++|+. |+|++++.++.+... ..+ .++|.|+....+.+.+++.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~---Gkpll~~~l~~~~~~------------~~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLD---GQTLIERAVDGLLDS------------GVVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEET---TEEHHHHHHHHHHHT------------SCCCEEEEEECGGGHHHHHHHHG
T ss_pred ceEEEEECCCCCccCCCCCCceEEEEC---CeEHHHHHHHHHHhC------------CCCCeEEEECChHHHHHHHHHhc
Confidence 688999999999999988999999996 999999999988753 123 3556665554466666554
No 46
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=97.61 E-value=4.6e-05 Score=69.81 Aligned_cols=61 Identities=26% Similarity=0.431 Sum_probs=44.9
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHHHh
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLES 219 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~~~ 219 (468)
+.+|+||||.|||||. .||.++|+. |+|++++.++++... .+ .++|.|+.. ++.+.+++++
T Consensus 1 m~aiIlA~G~s~R~~~-~~K~l~~~~---g~pli~~~l~~l~~~-------------~~~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG-VEKPLIKLC---GRCLIDYVVSPLLKS-------------KVNNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp CEEEEEC----CGGGG-SCGGGCEET---TEEHHHHHHHHHHSS-------------SCCCEEEECCTT-CHHHHHHHHH
T ss_pred CEEEEECCCCCCcCCC-CCccEEEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEeCCC-hHHHHHHHHh
Confidence 3579999999999986 799999996 999999999998642 23 455556544 7889999987
No 47
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=97.51 E-value=9.9e-05 Score=69.42 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=37.4
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
-+.+|+||||.|||||.+.||.++|+. |+|++++.++++..
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i~---Gkpli~~~i~~l~~ 53 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLK 53 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEET---TEETTHHHHHHHHH
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEEC---CeEHHHHHHHHHHc
Confidence 478899999999999977799999996 99999999999875
No 48
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=97.46 E-value=8.6e-05 Score=71.55 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=37.2
Q ss_pred ceEEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.||||+ .+.||.++|+. |+|++++.++++..
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~---gkpli~~~l~~l~~ 68 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQIEFLKE 68 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeEC---CEEHHHHHHHHHHH
Confidence 5789999999999998 47899999996 99999999999876
No 49
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=97.44 E-value=2.4e-05 Score=75.73 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.0
Q ss_pred EEEecCCCCCcCCc---CCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 143 vv~LaGG~GTRLG~---~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
+|+||||.||||+. +.||.++|+. |+|++++.++.+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~---gkpli~~~l~~l~~ 42 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAH---GQTLFEHSVNSFAA 42 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEET---TEEHHHHHHGGGGG
T ss_pred EEEEcCCCCcccccCCCCCCccccEEC---CeEHHHHHHHHHhc
Confidence 68999999999964 7899999996 99999999998864
No 50
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=97.40 E-value=8.3e-05 Score=70.22 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=37.2
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l~~i~---g~pll~~~i~~l~~ 47 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLA 47 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHT
T ss_pred ceeEEEECCcCccccCCCCCcceeeEC---CEEHHHHHHHHHHh
Confidence 578999999999999977899999996 99999999998865
No 51
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=97.29 E-value=0.00016 Score=66.85 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=34.3
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|||||. ||.++|+. |+|++++.++++..
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i~---g~pll~~~l~~l~~ 40 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKID---NTPIIMRTIRIYGD 40 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBSS---SSBHHHHHHHHTTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEeC---ceEHHHHHHHHHHh
Confidence 36789999999999984 99999996 99999999988753
No 52
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=97.24 E-value=0.00018 Score=66.74 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=35.9
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.||||| ..||.++|+. |+|++++.++++..
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i~---G~pli~~~l~~l~~ 45 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLELN---GKPLWQHVADALMT 45 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEET---TEEHHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeEC---ceeHHHHHHHHHHh
Confidence 5789999999999998 5799999996 99999999998863
No 53
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=97.22 E-value=0.00017 Score=68.53 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=27.3
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIEC 180 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~ 180 (468)
++.+|+||||.|||||.+ ||.++|+. |+|++++.+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i~---gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQVG---GRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBCS---SSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEEC---CEEHHHHHHHh
Confidence 578899999999999976 99999996 99999999988
No 54
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=97.21 E-value=0.00022 Score=67.22 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=40.6
Q ss_pred hhceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCccccCEEEEcCccchHHHHHHH
Q 012230 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 138 l~kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~ip~~IMtS~~t~~~t~~~~ 217 (468)
..++.+|+||||.|||||.. ||.++|+. |++++++.++++... . -.++|.| +.++.+.+++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i~---g~pli~~~l~~l~~~---~----------~~i~vv~--~~~~~~~~~~ 76 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRVG---GCEIILRTMKLLSPH---V----------SEFIIVA--SRYADDIDAF 76 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEET---TEEHHHHHHHHHGGG---E----------EEEEEEE--STTHHHHHHH
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEEC---CEEHHHHHHHHHHHh---C----------CEEEEEe--CChHHHHHHH
Confidence 34688999999999999743 99999996 999999999888642 1 1345555 5566676765
Q ss_pred H
Q 012230 218 E 218 (468)
Q Consensus 218 ~ 218 (468)
.
T Consensus 77 ~ 77 (232)
T 2xme_A 77 L 77 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00031 Score=65.95 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=33.7
Q ss_pred eEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHH
Q 012230 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (468)
Q Consensus 141 vavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~ 182 (468)
+.+|+||||.||||| .||.++|+. |+|++++.++.+.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~~---G~pli~~~~~~l~ 37 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVMLC---GKKLIEWVLEKYS 37 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEET---TEEHHHHHHHHHT
T ss_pred CEEEEECCCchhhCC--CCCcccEEC---CeeHHHHHHHHhc
Confidence 468999999999999 799999996 9999999999885
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=96.88 E-value=0.00046 Score=70.62 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=37.1
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.|||||.+.||.++|+. |+|++++.++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l~---GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEEB---TEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcceEEEC---CeEHHHHHHHHHHc
Confidence 478899999999999977799999996 99999999998864
No 57
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=96.88 E-value=0.00019 Score=66.58 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=35.3
Q ss_pred ceEEEEecCCCCCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||.||||| .||.++|+. |+|++++.++++..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i~---g~pll~~~l~~l~~ 52 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEIK---GKKVIERVYETAKS 52 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHHH---HHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCccCC--CCcccceEC---ceEHHHHHHHHHHH
Confidence 5789999999999998 799999996 99999999998864
No 58
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=96.67 E-value=0.0017 Score=66.04 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=45.2
Q ss_pred EEEEecCCCCCcCC---cCCCcccCCccCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-CEEEEcCccchHHHHHHH
Q 012230 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELL 217 (468)
Q Consensus 142 avv~LaGG~GTRLG---~~~pK~~lP~~~~~gks~l~l~~~~i~~l~~~~~~~~~g~~~~i-p~~IMtS~~t~~~t~~~~ 217 (468)
.+|+||||.||||+ ...||.++|+. |++++++.++++... .+ .++|.|+.. +.+++
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~---g~pli~~~l~~l~~~-------------~~~~i~vv~~~~----i~~~~ 61 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPIL---SKPLIEYQIEYLRKC-------------GIRDITVIVSSK----NKEYF 61 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT-------------TCCEEEEEECGG----GHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeEC---CEeHHHHHHHHHHHC-------------CCCEEEEEeCHH----HHHHh
Confidence 57999999999997 36799999996 999999999998763 13 345555544 67777
Q ss_pred Hh
Q 012230 218 ES 219 (468)
Q Consensus 218 ~~ 219 (468)
++
T Consensus 62 ~~ 63 (401)
T 2ggo_A 62 EK 63 (401)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 59
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=96.08 E-value=0.0036 Score=59.04 Aligned_cols=40 Identities=30% Similarity=0.543 Sum_probs=33.4
Q ss_pred ceEEEEecCCC---CCcCCcCCCcccCCccCCCCcchHHHHHHHHHH
Q 012230 140 NAAFVLVAGGL---GERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (468)
Q Consensus 140 kvavv~LaGG~---GTRLG~~~pK~~lP~~~~~gks~l~l~~~~i~~ 183 (468)
++.+|+||||. |+|+| ..||.++|+. |+|++++.++++..
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i~---g~pll~~~l~~l~~ 44 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYR---GRPMVEWVLEALYA 44 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEET---TEETHHHHHHHHHH
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEEC---CEEHHHHHHHHHHh
Confidence 36789999999 55554 3699999996 99999999999875
Done!