Query 012231
Match_columns 468
No_of_seqs 168 out of 215
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 2.2E-30 4.7E-35 284.9 25.6 312 25-340 499-885 (913)
2 PF07888 CALCOCO1: Calcium bin 98.0 0.045 9.8E-07 60.2 36.7 29 97-125 208-236 (546)
3 PF09726 Macoilin: Transmembra 97.7 0.0088 1.9E-07 67.5 24.2 167 99-297 478-661 (697)
4 PRK03918 chromosome segregatio 97.2 0.69 1.5E-05 52.7 34.8 29 241-269 414-442 (880)
5 TIGR00606 rad50 rad50. This fa 96.8 0.61 1.3E-05 56.2 27.7 86 36-130 793-878 (1311)
6 PRK02224 chromosome segregatio 96.8 1.5 3.2E-05 50.3 33.5 19 235-253 408-426 (880)
7 COG1196 Smc Chromosome segrega 96.8 0.65 1.4E-05 55.4 26.8 32 97-128 255-286 (1163)
8 PRK11637 AmiB activator; Provi 96.7 0.35 7.5E-06 51.3 22.2 16 425-440 387-402 (428)
9 KOG4673 Transcription factor T 96.6 1.8 3.8E-05 49.3 27.1 122 28-152 402-541 (961)
10 TIGR02169 SMC_prok_A chromosom 96.6 2.1 4.6E-05 49.7 31.4 11 283-293 480-490 (1164)
11 KOG0964 Structural maintenance 96.6 2.3 5.1E-05 49.9 28.5 110 135-257 315-429 (1200)
12 PF03638 TCR: Tesmin/TSO1-like 96.3 0.0022 4.7E-08 48.0 1.9 38 351-391 3-40 (42)
13 TIGR00606 rad50 rad50. This fa 96.3 2.9 6.2E-05 50.7 28.6 129 64-192 298-438 (1311)
14 TIGR02169 SMC_prok_A chromosom 96.2 3.5 7.5E-05 47.9 32.9 17 282-298 472-488 (1164)
15 KOG0161 Myosin class II heavy 96.2 4.3 9.3E-05 51.1 29.5 66 106-171 1073-1138(1930)
16 COG1579 Zn-ribbon protein, pos 96.1 1.4 3E-05 44.3 20.5 156 32-193 14-169 (239)
17 TIGR02168 SMC_prok_B chromosom 95.9 4.8 0.0001 46.5 30.6 17 36-52 678-694 (1179)
18 KOG1029 Endocytic adaptor prot 95.8 4.9 0.00011 46.4 26.0 96 147-257 471-567 (1118)
19 KOG0933 Structural maintenance 95.8 4.6 9.9E-05 47.7 25.6 121 35-158 677-797 (1174)
20 TIGR02168 SMC_prok_B chromosom 95.7 5.6 0.00012 46.0 33.0 22 37-58 672-693 (1179)
21 PF12325 TMF_TATA_bd: TATA ele 95.6 0.29 6.4E-06 44.2 12.5 102 18-127 13-114 (120)
22 PF00038 Filament: Intermediat 95.5 1.6 3.5E-05 43.8 19.0 86 104-190 218-304 (312)
23 PF00038 Filament: Intermediat 95.3 3.7 8E-05 41.2 25.1 37 24-60 43-79 (312)
24 PF05667 DUF812: Protein of un 95.3 6.7 0.00015 44.1 31.2 198 26-253 319-526 (594)
25 KOG0161 Myosin class II heavy 95.2 13 0.00028 47.1 31.2 98 97-194 1008-1108(1930)
26 PF12128 DUF3584: Protein of u 95.2 10 0.00022 45.8 31.2 35 25-59 597-631 (1201)
27 KOG0977 Nuclear envelope prote 95.1 7 0.00015 43.6 28.2 100 25-124 43-163 (546)
28 PF07888 CALCOCO1: Calcium bin 94.9 7.8 0.00017 43.2 28.9 82 103-184 298-393 (546)
29 KOG0612 Rho-associated, coiled 94.1 18 0.0004 43.7 28.6 148 153-305 652-816 (1317)
30 PF09726 Macoilin: Transmembra 94.0 14 0.00031 42.4 26.0 207 36-255 419-652 (697)
31 PF10174 Cast: RIM-binding pro 93.6 18 0.00039 42.1 28.4 33 26-58 229-261 (775)
32 KOG0250 DNA repair protein RAD 93.6 14 0.00029 44.2 22.4 148 32-187 278-440 (1074)
33 COG1196 Smc Chromosome segrega 93.4 23 0.0005 42.6 29.9 26 32-57 671-696 (1163)
34 KOG0977 Nuclear envelope prote 93.3 17 0.00036 40.8 26.7 28 277-304 347-374 (546)
35 PRK03918 chromosome segregatio 93.2 19 0.00041 41.2 30.2 75 49-123 145-221 (880)
36 PRK11637 AmiB activator; Provi 93.1 14 0.0003 39.3 26.7 27 108-134 109-135 (428)
37 PF05033 Pre-SET: Pre-SET moti 93.1 0.059 1.3E-06 45.8 2.1 36 352-390 47-103 (103)
38 PF10174 Cast: RIM-binding pro 92.9 23 0.0005 41.2 26.2 156 27-193 432-600 (775)
39 PRK02224 chromosome segregatio 92.6 23 0.00051 40.7 31.6 23 74-96 408-430 (880)
40 PF14282 FlxA: FlxA-like prote 92.0 2.1 4.6E-05 37.5 10.5 61 34-98 18-78 (106)
41 PRK04863 mukB cell division pr 91.9 41 0.00089 42.0 32.4 83 219-308 443-528 (1486)
42 KOG0250 DNA repair protein RAD 91.3 40 0.00086 40.5 29.0 40 216-258 402-441 (1074)
43 KOG4674 Uncharacterized conser 91.2 52 0.0011 41.7 29.2 129 70-198 695-862 (1822)
44 KOG4673 Transcription factor T 91.1 35 0.00075 39.4 28.7 110 69-183 400-516 (961)
45 KOG0996 Structural maintenance 91.0 45 0.00097 40.5 27.0 49 78-130 858-906 (1293)
46 KOG0994 Extracellular matrix g 90.8 32 0.0007 41.8 20.8 122 77-198 1618-1746(1758)
47 KOG0612 Rho-associated, coiled 90.7 48 0.001 40.4 23.8 19 37-55 467-485 (1317)
48 PRK09039 hypothetical protein; 90.5 20 0.00043 37.6 17.6 26 30-55 41-66 (343)
49 COG4942 Membrane-bound metallo 90.4 30 0.00065 37.6 22.8 142 31-184 41-207 (420)
50 KOG4674 Uncharacterized conser 90.2 63 0.0014 41.0 29.4 175 71-261 798-980 (1822)
51 PF08614 ATG16: Autophagy prot 90.1 4.3 9.3E-05 38.8 11.5 89 30-122 69-157 (194)
52 PHA02562 46 endonuclease subun 89.8 33 0.00071 37.2 23.0 88 75-163 252-352 (562)
53 PF07106 TBPIP: Tat binding pr 89.7 8.1 0.00017 36.0 12.7 69 19-91 67-136 (169)
54 PRK01156 chromosome segregatio 89.2 50 0.0011 38.3 31.1 28 281-308 411-438 (895)
55 PF09755 DUF2046: Uncharacteri 89.1 32 0.00069 36.0 28.1 163 31-198 23-203 (310)
56 PF10481 CENP-F_N: Cenp-F N-te 88.6 26 0.00057 36.2 16.1 148 147-305 24-188 (307)
57 PF05667 DUF812: Protein of un 88.6 24 0.00052 39.9 17.4 160 28-195 328-496 (594)
58 PF05701 WEMBL: Weak chloropla 88.5 44 0.00095 36.9 29.0 167 23-190 115-309 (522)
59 COG3883 Uncharacterized protei 88.2 33 0.00072 35.2 20.5 161 29-190 32-212 (265)
60 PRK09039 hypothetical protein; 88.1 35 0.00077 35.7 17.4 92 82-197 113-208 (343)
61 PF05010 TACC: Transforming ac 88.0 29 0.00063 34.2 22.9 116 24-147 5-142 (207)
62 PF09730 BicD: Microtubule-ass 87.8 60 0.0013 37.7 20.5 142 30-184 29-181 (717)
63 KOG4643 Uncharacterized coiled 87.8 71 0.0015 38.4 28.7 189 88-300 394-596 (1195)
64 PF09730 BicD: Microtubule-ass 87.7 52 0.0011 38.1 19.6 143 34-177 264-434 (717)
65 KOG1853 LIS1-interacting prote 87.3 38 0.00082 34.9 22.1 101 71-171 20-121 (333)
66 PF12718 Tropomyosin_1: Tropom 86.9 26 0.00056 32.4 14.0 22 75-96 77-98 (143)
67 PF04849 HAP1_N: HAP1 N-termin 86.2 47 0.001 34.8 19.8 142 31-190 163-304 (306)
68 PF04156 IncA: IncA protein; 86.2 19 0.00042 33.7 13.0 28 71-98 123-150 (191)
69 KOG4643 Uncharacterized coiled 86.0 88 0.0019 37.7 21.6 195 36-237 430-637 (1195)
70 PF05010 TACC: Transforming ac 85.6 39 0.00085 33.3 17.8 65 119-190 132-196 (207)
71 PF12128 DUF3584: Protein of u 85.6 95 0.0021 37.8 34.0 25 219-243 782-806 (1201)
72 PF15070 GOLGA2L5: Putative go 85.1 75 0.0016 36.2 26.3 60 76-136 48-107 (617)
73 KOG0994 Extracellular matrix g 84.9 1.1E+02 0.0023 37.7 27.1 51 148-198 1647-1697(1758)
74 KOG4657 Uncharacterized conser 84.9 47 0.001 33.6 16.2 21 165-185 125-145 (246)
75 KOG0018 Structural maintenance 84.7 1E+02 0.0022 37.3 24.8 36 279-314 458-493 (1141)
76 PHA02562 46 endonuclease subun 84.6 64 0.0014 34.9 30.5 20 36-55 175-194 (562)
77 PF05622 HOOK: HOOK protein; 84.2 0.31 6.8E-06 55.1 0.0 153 26-197 184-339 (713)
78 PF00261 Tropomyosin: Tropomyo 84.0 18 0.0004 35.6 12.2 98 31-132 130-227 (237)
79 KOG0804 Cytoplasmic Zn-finger 83.4 54 0.0012 36.1 16.1 73 23-96 327-400 (493)
80 KOG0971 Microtubule-associated 83.3 1.1E+02 0.0024 36.7 26.2 76 76-152 229-308 (1243)
81 COG2433 Uncharacterized conser 83.0 19 0.00042 40.7 12.9 85 74-176 425-509 (652)
82 KOG0980 Actin-binding protein 82.6 1.1E+02 0.0025 36.3 27.9 86 40-139 331-418 (980)
83 TIGR03007 pepcterm_ChnLen poly 82.4 51 0.0011 35.4 15.8 72 32-103 208-280 (498)
84 PF07111 HCR: Alpha helical co 82.2 1.1E+02 0.0023 35.6 20.9 133 39-172 475-620 (739)
85 PF08317 Spc7: Spc7 kinetochor 81.9 56 0.0012 33.8 15.3 63 33-96 140-202 (325)
86 PF05483 SCP-1: Synaptonemal c 81.8 1.1E+02 0.0024 35.5 21.1 162 31-200 590-752 (786)
87 PF14988 DUF4515: Domain of un 81.8 55 0.0012 32.1 22.7 44 139-182 76-123 (206)
88 KOG2129 Uncharacterized conser 81.8 78 0.0017 34.8 16.4 81 74-154 204-298 (552)
89 smart00787 Spc7 Spc7 kinetocho 81.3 64 0.0014 33.6 15.4 69 28-97 130-198 (312)
90 PF09787 Golgin_A5: Golgin sub 80.8 95 0.0021 34.2 19.9 176 23-200 175-382 (511)
91 COG2433 Uncharacterized conser 80.7 63 0.0014 36.8 15.9 27 105-131 432-458 (652)
92 KOG4807 F-actin binding protei 80.4 95 0.002 33.9 27.0 33 26-58 343-379 (593)
93 PF12718 Tropomyosin_1: Tropom 80.4 49 0.0011 30.6 18.0 117 31-169 17-136 (143)
94 PF15290 Syntaphilin: Golgi-lo 80.1 19 0.00042 37.3 10.8 63 219-304 105-174 (305)
95 COG1579 Zn-ribbon protein, pos 80.0 72 0.0016 32.3 17.7 78 96-184 90-174 (239)
96 PF08317 Spc7: Spc7 kinetochor 79.6 80 0.0017 32.6 21.0 22 106-127 181-202 (325)
97 PF15397 DUF4618: Domain of un 79.3 79 0.0017 32.4 17.1 67 23-96 69-138 (258)
98 PRK04863 mukB cell division pr 78.9 1.9E+02 0.0041 36.5 28.9 147 26-185 232-378 (1486)
99 PF05557 MAD: Mitotic checkpoi 78.0 0.7 1.5E-05 52.3 0.0 27 33-59 66-92 (722)
100 KOG0995 Centromere-associated 77.9 1.3E+02 0.0028 34.1 29.2 165 29-195 222-393 (581)
101 KOG0946 ER-Golgi vesicle-tethe 77.1 1.6E+02 0.0036 34.8 25.0 55 78-132 706-760 (970)
102 PRK13729 conjugal transfer pil 76.8 8.5 0.00018 42.3 7.7 53 68-124 67-119 (475)
103 PF10146 zf-C4H2: Zinc finger- 76.6 87 0.0019 31.4 14.8 53 36-100 2-54 (230)
104 KOG0933 Structural maintenance 76.5 1.9E+02 0.004 35.2 27.7 26 36-61 709-734 (1174)
105 PF01576 Myosin_tail_1: Myosin 76.3 0.83 1.8E-05 53.1 0.0 80 22-102 118-204 (859)
106 TIGR01005 eps_transp_fam exopo 76.1 1E+02 0.0022 35.2 16.3 21 182-202 382-402 (754)
107 PF11068 YlqD: YlqD protein; 76.0 41 0.0009 30.9 10.9 71 27-100 19-89 (131)
108 PF15254 CCDC14: Coiled-coil d 76.0 1.7E+02 0.0037 34.5 19.5 26 131-156 466-491 (861)
109 PF10267 Tmemb_cc2: Predicted 75.9 23 0.00051 38.1 10.6 75 28-102 4-79 (395)
110 PRK10884 SH3 domain-containing 75.7 55 0.0012 32.2 12.3 48 35-93 93-140 (206)
111 PF10146 zf-C4H2: Zinc finger- 75.6 92 0.002 31.2 14.8 90 81-188 4-93 (230)
112 KOG0996 Structural maintenance 75.3 2.1E+02 0.0046 35.2 29.7 14 409-422 713-726 (1293)
113 PF08581 Tup_N: Tup N-terminal 74.8 51 0.0011 27.9 10.2 69 44-120 6-75 (79)
114 cd07649 F-BAR_GAS7 The F-BAR ( 74.6 95 0.0021 30.9 14.9 76 69-144 123-200 (233)
115 PF05700 BCAS2: Breast carcino 74.3 70 0.0015 31.4 12.7 19 24-42 97-115 (221)
116 PF08172 CASP_C: CASP C termin 74.1 65 0.0014 32.5 12.7 47 70-133 85-131 (248)
117 PF00769 ERM: Ezrin/radixin/mo 73.7 1E+02 0.0022 30.9 17.6 21 74-94 8-28 (246)
118 COG4942 Membrane-bound metallo 73.2 1.5E+02 0.0032 32.5 24.9 25 105-129 157-181 (420)
119 PF12761 End3: Actin cytoskele 72.9 1E+02 0.0022 30.4 13.4 99 10-129 82-180 (195)
120 KOG1899 LAR transmembrane tyro 72.3 1.2E+02 0.0027 34.9 15.2 136 31-171 107-261 (861)
121 TIGR03017 EpsF chain length de 72.2 1.4E+02 0.0029 31.6 19.0 21 74-94 257-277 (444)
122 PF03915 AIP3: Actin interacti 70.6 1.6E+02 0.0036 32.1 15.5 221 13-259 63-319 (424)
123 COG1382 GimC Prefoldin, chaper 70.4 87 0.0019 28.6 11.6 79 33-121 18-110 (119)
124 PF04111 APG6: Autophagy prote 70.4 1.3E+02 0.0027 31.4 14.1 87 107-197 41-127 (314)
125 KOG1171 Metallothionein-like p 69.7 1.8 3.9E-05 46.5 0.6 35 352-389 218-252 (406)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.0 89 0.0019 28.2 17.7 17 36-52 4-20 (132)
127 PF05701 WEMBL: Weak chloropla 68.3 2E+02 0.0043 31.9 28.1 163 28-190 165-330 (522)
128 PF05911 DUF869: Plant protein 68.0 1.8E+02 0.0039 34.2 16.0 20 226-245 741-760 (769)
129 PRK01156 chromosome segregatio 67.9 2.4E+02 0.0053 32.8 33.4 43 81-123 228-270 (895)
130 TIGR03545 conserved hypothetic 67.8 65 0.0014 36.2 12.1 25 35-59 164-188 (555)
131 PTZ00419 valyl-tRNA synthetase 67.7 20 0.00043 42.6 8.6 68 33-101 927-994 (995)
132 PRK12704 phosphodiesterase; Pr 67.7 2.1E+02 0.0045 31.9 17.5 12 232-243 265-276 (520)
133 PF04822 Takusan: Takusan; In 67.5 54 0.0012 28.1 8.9 32 30-61 13-45 (84)
134 PF10168 Nup88: Nuclear pore c 67.2 2.5E+02 0.0054 32.7 18.3 27 169-195 685-711 (717)
135 COG4372 Uncharacterized protei 67.0 2E+02 0.0043 31.5 27.7 127 37-192 90-219 (499)
136 PRK00409 recombination and DNA 66.3 47 0.001 38.7 11.0 55 32-94 517-571 (782)
137 PRK11546 zraP zinc resistance 66.0 80 0.0017 29.6 10.5 52 69-123 52-103 (143)
138 PF04111 APG6: Autophagy prote 65.8 1.2E+02 0.0027 31.4 13.0 26 36-61 10-35 (314)
139 TIGR03185 DNA_S_dndD DNA sulfu 65.7 2.4E+02 0.0052 31.9 18.0 56 33-94 389-444 (650)
140 PF09789 DUF2353: Uncharacteri 65.5 1.9E+02 0.004 30.6 23.2 170 27-200 22-230 (319)
141 PF03962 Mnd1: Mnd1 family; I 65.3 91 0.002 30.1 11.2 62 32-95 66-127 (188)
142 smart00787 Spc7 Spc7 kinetocho 65.1 1E+02 0.0022 32.2 12.2 57 102-158 225-281 (312)
143 KOG1899 LAR transmembrane tyro 65.0 1.3E+02 0.0028 34.8 13.5 47 74-122 198-244 (861)
144 PF14988 DUF4515: Domain of un 64.6 1.5E+02 0.0032 29.1 24.4 73 75-150 51-123 (206)
145 COG2841 Uncharacterized protei 64.4 21 0.00045 29.9 5.6 48 85-132 7-62 (72)
146 PF00769 ERM: Ezrin/radixin/mo 63.5 1.7E+02 0.0036 29.4 16.8 26 147-172 88-113 (246)
147 PF15619 Lebercilin: Ciliary p 63.2 1.5E+02 0.0033 28.8 23.0 15 78-92 12-26 (194)
148 PF10186 Atg14: UV radiation r 63.0 1.6E+02 0.0034 28.9 17.0 23 37-59 22-44 (302)
149 TIGR01000 bacteriocin_acc bact 62.7 2.2E+02 0.0048 30.6 22.2 95 32-126 94-196 (457)
150 PF10458 Val_tRNA-synt_C: Valy 62.6 30 0.00066 27.7 6.3 61 33-95 2-63 (66)
151 PF10267 Tmemb_cc2: Predicted 62.3 2.4E+02 0.0051 30.7 16.1 26 157-184 307-332 (395)
152 PF10481 CENP-F_N: Cenp-F N-te 62.3 98 0.0021 32.2 11.1 29 33-61 16-44 (307)
153 PF03938 OmpH: Outer membrane 61.1 1.3E+02 0.0027 27.2 10.9 64 26-89 34-98 (158)
154 PF07798 DUF1640: Protein of u 60.8 1.5E+02 0.0033 28.0 12.7 6 113-118 142-147 (177)
155 KOG0804 Cytoplasmic Zn-finger 60.3 2.8E+02 0.006 30.9 16.7 81 113-196 365-448 (493)
156 TIGR03319 YmdA_YtgF conserved 59.5 2.9E+02 0.0063 30.8 17.5 54 90-143 92-145 (514)
157 TIGR02338 gimC_beta prefoldin, 57.7 1.3E+02 0.0028 26.2 11.4 31 31-61 13-46 (110)
158 KOG0971 Microtubule-associated 56.5 4.4E+02 0.0095 32.0 30.8 138 32-177 322-484 (1243)
159 TIGR01843 type_I_hlyD type I s 56.4 2.4E+02 0.0053 29.0 22.7 46 75-120 162-207 (423)
160 TIGR01005 eps_transp_fam exopo 56.3 3.6E+02 0.0078 30.9 23.4 24 116-139 288-311 (754)
161 PF05911 DUF869: Plant protein 55.6 4.1E+02 0.0089 31.4 26.9 89 37-128 54-153 (769)
162 KOG0239 Kinesin (KAR3 subfamil 55.0 2.9E+02 0.0063 31.9 14.5 28 32-59 179-206 (670)
163 PF10211 Ax_dynein_light: Axon 55.0 57 0.0012 31.5 7.8 71 25-95 117-187 (189)
164 PF06476 DUF1090: Protein of u 54.9 56 0.0012 29.4 7.2 51 29-89 64-114 (115)
165 PF05557 MAD: Mitotic checkpoi 54.4 4.1 9E-05 46.3 0.0 73 108-192 229-307 (722)
166 KOG0993 Rab5 GTPase effector R 54.2 2.8E+02 0.006 30.7 13.3 40 129-168 143-182 (542)
167 KOG3813 Uncharacterized conser 54.2 6 0.00013 43.8 1.1 44 348-393 304-352 (640)
168 PF08614 ATG16: Autophagy prot 54.1 1.6E+02 0.0034 28.1 10.7 17 37-53 69-85 (194)
169 TIGR01069 mutS2 MutS2 family p 54.1 96 0.0021 36.1 10.8 49 32-88 512-560 (771)
170 PRK10884 SH3 domain-containing 53.3 2.3E+02 0.0051 27.9 12.8 20 77-96 92-111 (206)
171 PF13851 GAS: Growth-arrest sp 52.9 2.3E+02 0.005 27.6 24.9 177 27-229 12-192 (201)
172 PF01576 Myosin_tail_1: Myosin 52.8 4.6 9.9E-05 47.1 0.0 28 279-306 792-819 (859)
173 TIGR01069 mutS2 MutS2 family p 52.6 3.8E+02 0.0082 31.4 15.2 63 77-139 510-573 (771)
174 PF05266 DUF724: Protein of un 52.6 2.3E+02 0.005 27.6 12.7 59 103-172 125-183 (190)
175 KOG4403 Cell surface glycoprot 52.3 3.7E+02 0.0081 29.9 18.4 77 214-305 334-423 (575)
176 PF10498 IFT57: Intra-flagella 51.9 3.3E+02 0.0071 29.1 14.1 54 82-135 267-320 (359)
177 PF05266 DUF724: Protein of un 51.7 1.7E+02 0.0037 28.4 10.5 94 31-125 72-175 (190)
178 COG3206 GumC Uncharacterized p 51.6 2.5E+02 0.0055 30.1 12.9 123 9-138 270-402 (458)
179 KOG0962 DNA repair protein RAD 51.6 5.8E+02 0.013 31.9 29.2 107 33-139 266-376 (1294)
180 KOG4787 Uncharacterized conser 51.4 4.4E+02 0.0096 30.5 17.0 95 17-115 322-419 (852)
181 TIGR01000 bacteriocin_acc bact 51.0 3.5E+02 0.0075 29.1 18.2 33 22-54 91-123 (457)
182 PLN02381 valyl-tRNA synthetase 50.7 60 0.0013 39.1 8.7 66 33-99 995-1060(1066)
183 PF10205 KLRAQ: Predicted coil 50.6 1E+02 0.0022 27.5 8.0 58 71-132 2-63 (102)
184 PF11559 ADIP: Afadin- and alp 49.8 2E+02 0.0044 26.1 16.8 57 111-167 89-145 (151)
185 PF10473 CENP-F_leu_zip: Leuci 49.7 2.2E+02 0.0048 26.6 14.6 22 34-55 23-44 (140)
186 TIGR03495 phage_LysB phage lys 49.7 1.5E+02 0.0032 27.6 9.3 47 98-144 53-99 (135)
187 PF05622 HOOK: HOOK protein; 49.5 5.5 0.00012 45.2 0.0 156 24-189 491-661 (713)
188 PF04420 CHD5: CHD5-like prote 48.9 82 0.0018 29.5 7.7 55 38-96 36-91 (161)
189 PF02403 Seryl_tRNA_N: Seryl-t 48.8 1.6E+02 0.0035 25.1 9.0 71 223-309 27-97 (108)
190 KOG4593 Mitotic checkpoint pro 48.7 5E+02 0.011 30.3 30.7 63 138-200 162-224 (716)
191 TIGR03007 pepcterm_ChnLen poly 48.7 3.8E+02 0.0081 28.9 24.2 124 29-157 162-291 (498)
192 PRK00409 recombination and DNA 48.5 4.4E+02 0.0096 30.9 14.9 43 97-139 536-578 (782)
193 KOG3433 Protein involved in me 48.3 2.5E+02 0.0054 27.8 10.9 77 74-154 77-157 (203)
194 KOG0288 WD40 repeat protein Ti 48.1 4.2E+02 0.0091 29.3 14.2 101 26-140 4-107 (459)
195 KOG1029 Endocytic adaptor prot 48.1 5.6E+02 0.012 30.7 27.2 30 114-143 391-420 (1118)
196 KOG3850 Predicted membrane pro 48.0 1.1E+02 0.0025 33.1 9.3 85 21-105 33-118 (455)
197 smart00570 AWS associated with 47.5 8.7 0.00019 30.0 0.8 39 352-392 4-46 (51)
198 PF09755 DUF2046: Uncharacteri 47.3 3.7E+02 0.008 28.4 26.5 40 81-122 109-148 (310)
199 smart00502 BBC B-Box C-termina 46.9 1.7E+02 0.0036 24.6 8.7 21 71-91 65-85 (127)
200 PF14282 FlxA: FlxA-like prote 46.9 1.1E+02 0.0023 26.9 7.6 29 108-136 50-78 (106)
201 PRK11546 zraP zinc resistance 46.8 2E+02 0.0043 27.1 9.7 57 25-96 51-107 (143)
202 PLN02943 aminoacyl-tRNA ligase 45.1 71 0.0015 38.0 8.1 65 33-98 887-951 (958)
203 PF02841 GBP_C: Guanylate-bind 45.1 3.5E+02 0.0076 27.5 16.0 125 23-168 171-297 (297)
204 PF15294 Leu_zip: Leucine zipp 45.0 3.8E+02 0.0082 27.9 16.0 144 38-193 128-277 (278)
205 cd00632 Prefoldin_beta Prefold 45.0 2E+02 0.0044 24.7 11.1 31 31-61 9-42 (105)
206 PRK04778 septation ring format 44.9 4.9E+02 0.011 29.1 27.9 86 39-124 253-339 (569)
207 PF15066 CAGE1: Cancer-associa 44.7 5E+02 0.011 29.1 15.7 54 108-175 452-505 (527)
208 PF08172 CASP_C: CASP C termin 44.7 2.3E+02 0.005 28.7 10.6 46 128-173 80-125 (248)
209 PRK05729 valS valyl-tRNA synth 44.4 74 0.0016 37.3 8.1 63 33-96 809-871 (874)
210 KOG0980 Actin-binding protein 44.0 6.6E+02 0.014 30.3 22.5 18 284-301 594-611 (980)
211 KOG3990 Uncharacterized conser 43.6 1.1E+02 0.0024 31.6 8.0 38 77-117 224-261 (305)
212 PF12785 VESA1_N: Variant eryt 43.6 20 0.00044 39.2 3.1 27 352-378 149-177 (462)
213 KOG1082 Histone H3 (Lys9) meth 43.4 17 0.00036 38.2 2.4 19 373-392 152-170 (364)
214 TIGR02231 conserved hypothetic 43.3 4.6E+02 0.0099 28.8 13.5 33 228-260 141-173 (525)
215 TIGR02338 gimC_beta prefoldin, 43.0 2.3E+02 0.0049 24.7 10.2 24 76-99 15-38 (110)
216 PF10168 Nup88: Nuclear pore c 42.9 6.1E+02 0.013 29.6 22.3 69 70-145 546-615 (717)
217 PF15188 CCDC-167: Coiled-coil 42.7 1.9E+02 0.0042 24.9 8.3 63 80-160 7-69 (85)
218 COG0419 SbcC ATPase involved i 42.2 6.4E+02 0.014 29.7 33.1 41 217-257 663-706 (908)
219 KOG0982 Centrosomal protein Nu 41.8 5.3E+02 0.012 28.7 23.8 51 151-201 307-357 (502)
220 PF04156 IncA: IncA protein; 41.5 3E+02 0.0065 25.7 16.3 17 36-52 82-98 (191)
221 KOG2129 Uncharacterized conser 40.9 4.8E+02 0.01 29.0 12.6 54 80-139 255-308 (552)
222 cd09238 V_Alix_like_1 Protein- 40.8 4.4E+02 0.0096 27.5 14.8 86 35-142 195-280 (339)
223 PF11068 YlqD: YlqD protein; 40.7 3E+02 0.0064 25.4 10.7 68 66-133 15-84 (131)
224 PF08581 Tup_N: Tup N-terminal 40.6 2.3E+02 0.0049 24.0 8.7 17 70-86 56-72 (79)
225 PF09744 Jnk-SapK_ap_N: JNK_SA 40.0 3.3E+02 0.0073 25.8 14.2 68 73-140 84-155 (158)
226 PF07989 Microtub_assoc: Micro 39.8 2.2E+02 0.0048 23.7 10.0 32 32-63 4-35 (75)
227 TIGR00634 recN DNA repair prot 39.3 5.8E+02 0.013 28.4 14.6 28 33-60 264-291 (563)
228 KOG3859 Septins (P-loop GTPase 39.1 3.9E+02 0.0085 28.5 11.3 57 71-127 341-402 (406)
229 PF04012 PspA_IM30: PspA/IM30 39.1 3.6E+02 0.0078 25.9 16.5 132 28-172 51-182 (221)
230 PF12709 Kinetocho_Slk19: Cent 37.8 76 0.0016 27.6 5.1 30 31-60 45-74 (87)
231 KOG0962 DNA repair protein RAD 37.5 9.4E+02 0.02 30.3 28.6 62 40-101 793-856 (1294)
232 KOG1937 Uncharacterized conser 37.4 6.3E+02 0.014 28.3 26.3 108 81-199 265-378 (521)
233 PRK15178 Vi polysaccharide exp 36.7 3.9E+02 0.0085 29.4 11.4 90 34-131 285-384 (434)
234 PF15254 CCDC14: Coiled-coil d 36.5 8.1E+02 0.018 29.2 16.3 35 26-60 432-466 (861)
235 PF05700 BCAS2: Breast carcino 36.4 3.7E+02 0.0081 26.3 10.4 82 36-131 137-218 (221)
236 PF09403 FadA: Adhesion protei 36.3 1.2E+02 0.0025 27.9 6.4 85 20-104 30-126 (126)
237 PRK13729 conjugal transfer pil 36.3 1.4E+02 0.0031 33.1 8.1 22 73-94 99-120 (475)
238 PF04102 SlyX: SlyX; InterPro 35.9 2.2E+02 0.0048 23.0 7.4 49 33-96 2-50 (69)
239 PF15372 DUF4600: Domain of un 35.3 1.1E+02 0.0023 28.4 6.0 71 233-314 6-79 (129)
240 TIGR03185 DNA_S_dndD DNA sulfu 35.2 7.1E+02 0.015 28.2 28.5 58 110-167 231-288 (650)
241 PF11559 ADIP: Afadin- and alp 34.2 3.6E+02 0.0078 24.5 16.3 17 140-156 132-148 (151)
242 TIGR03017 EpsF chain length de 34.2 5.8E+02 0.013 26.9 24.9 44 109-156 254-297 (444)
243 KOG4302 Microtubule-associated 34.0 5.5E+02 0.012 29.8 12.5 41 115-155 278-318 (660)
244 PRK09841 cryptic autophosphory 33.8 7.9E+02 0.017 28.3 18.1 20 78-97 311-330 (726)
245 KOG4807 F-actin binding protei 33.5 7E+02 0.015 27.6 18.6 118 25-143 353-490 (593)
246 PF14712 Snapin_Pallidin: Snap 33.4 2.8E+02 0.0061 23.0 9.3 73 29-102 8-89 (92)
247 KOG0244 Kinesin-like protein [ 33.2 9.5E+02 0.021 29.1 14.7 83 33-123 472-562 (913)
248 PF09304 Cortex-I_coil: Cortex 32.4 3.8E+02 0.0082 24.2 15.0 28 30-57 11-38 (107)
249 KOG0976 Rho/Rac1-interacting s 32.4 9.8E+02 0.021 29.0 29.4 30 108-137 182-211 (1265)
250 KOG1079 Transcriptional repres 32.2 14 0.0003 42.2 -0.2 59 353-413 541-613 (739)
251 PF12325 TMF_TATA_bd: TATA ele 32.1 3.9E+02 0.0085 24.3 12.5 37 159-195 72-108 (120)
252 PF11932 DUF3450: Protein of u 31.8 5.2E+02 0.011 25.6 16.3 58 81-141 59-119 (251)
253 KOG0978 E3 ubiquitin ligase in 31.6 9.1E+02 0.02 28.4 25.8 120 10-134 220-339 (698)
254 PF10473 CENP-F_leu_zip: Leuci 31.4 4.4E+02 0.0095 24.6 19.2 36 109-144 66-101 (140)
255 TIGR02231 conserved hypothetic 31.3 6.6E+02 0.014 27.5 12.3 23 34-56 70-92 (525)
256 PRK09343 prefoldin subunit bet 31.3 3.9E+02 0.0084 23.9 11.3 29 33-61 19-50 (121)
257 TIGR03752 conj_TIGR03752 integ 31.2 2.2E+02 0.0047 31.7 8.4 26 32-57 56-81 (472)
258 PF13949 ALIX_LYPXL_bnd: ALIX 31.0 5.4E+02 0.012 25.5 15.3 133 33-192 142-274 (296)
259 PF14817 HAUS5: HAUS augmin-li 30.9 8.9E+02 0.019 28.0 19.1 119 13-134 289-414 (632)
260 PF04977 DivIC: Septum formati 30.8 1.5E+02 0.0033 23.4 5.6 31 31-61 20-50 (80)
261 PF06818 Fez1: Fez1; InterPro 30.8 5.5E+02 0.012 25.6 11.7 85 37-128 12-106 (202)
262 PF02388 FemAB: FemAB family; 30.6 2.6E+02 0.0056 29.9 8.9 56 34-101 241-296 (406)
263 KOG2751 Beclin-like protein [S 30.5 7.9E+02 0.017 27.3 16.5 129 20-172 128-256 (447)
264 KOG0976 Rho/Rac1-interacting s 30.4 1.1E+03 0.023 28.7 30.8 59 31-89 130-198 (1265)
265 cd07651 F-BAR_PombeCdc15_like 30.3 5.2E+02 0.011 25.2 15.9 6 29-34 58-63 (236)
266 PF10498 IFT57: Intra-flagella 30.3 7E+02 0.015 26.6 12.5 21 106-126 298-318 (359)
267 PRK08476 F0F1 ATP synthase sub 29.9 4.3E+02 0.0093 24.1 11.5 74 67-140 55-131 (141)
268 KOG1962 B-cell receptor-associ 29.8 5.9E+02 0.013 25.6 11.3 55 47-102 132-186 (216)
269 PF13904 DUF4207: Domain of un 29.6 6.1E+02 0.013 25.7 13.4 19 137-155 133-151 (264)
270 PF07058 Myosin_HC-like: Myosi 29.5 3.7E+02 0.008 28.6 9.3 73 25-102 57-139 (351)
271 PF07439 DUF1515: Protein of u 29.5 3.8E+02 0.0083 24.4 8.2 67 39-126 5-71 (112)
272 KOG4603 TBP-1 interacting prot 29.4 2.2E+02 0.0048 27.9 7.3 30 30-59 88-117 (201)
273 PF12709 Kinetocho_Slk19: Cent 29.4 3.8E+02 0.0083 23.3 12.3 21 110-130 64-84 (87)
274 PF09728 Taxilin: Myosin-like 29.3 6.7E+02 0.014 26.1 28.1 76 227-302 232-309 (309)
275 PRK03947 prefoldin subunit alp 29.3 4.2E+02 0.0091 23.7 10.4 32 27-58 12-43 (140)
276 PF06810 Phage_GP20: Phage min 29.2 4.9E+02 0.011 24.4 11.5 43 72-114 63-105 (155)
277 PF12669 P12: Virus attachment 29.1 45 0.00098 26.5 2.2 12 351-362 28-39 (58)
278 PRK11415 hypothetical protein; 29.1 80 0.0017 26.1 3.8 15 115-129 45-59 (74)
279 KOG1853 LIS1-interacting prote 29.0 6.9E+02 0.015 26.1 20.7 88 78-165 59-147 (333)
280 COG1340 Uncharacterized archae 29.0 7E+02 0.015 26.2 27.0 110 32-166 10-125 (294)
281 PF15070 GOLGA2L5: Putative go 28.8 9.4E+02 0.02 27.6 26.5 65 40-105 85-149 (617)
282 PF11221 Med21: Subunit 21 of 28.6 4.6E+02 0.01 24.0 10.3 55 29-91 63-117 (144)
283 PF13166 AAA_13: AAA domain 28.2 9E+02 0.019 27.2 24.5 71 26-96 271-347 (712)
284 PF10458 Val_tRNA-synt_C: Valy 28.1 2.2E+02 0.0048 22.7 6.1 62 25-91 1-66 (66)
285 TIGR03319 YmdA_YtgF conserved 28.0 8.8E+02 0.019 27.1 22.7 43 158-200 93-135 (514)
286 KOG1171 Metallothionein-like p 27.9 26 0.00057 37.9 0.9 65 350-422 130-194 (406)
287 PF05008 V-SNARE: Vesicle tran 27.5 3.3E+02 0.007 21.9 8.0 22 73-94 56-77 (79)
288 PF13863 DUF4200: Domain of un 27.2 4.2E+02 0.0091 23.0 12.1 24 107-130 79-102 (126)
289 PF10376 Mei5: Double-strand r 27.1 6.2E+02 0.014 25.3 10.2 29 117-145 132-160 (221)
290 PRK10780 periplasmic chaperone 27.0 5.1E+02 0.011 24.0 12.3 37 25-61 40-76 (165)
291 PF09728 Taxilin: Myosin-like 27.0 7.3E+02 0.016 25.8 22.8 82 103-188 182-273 (309)
292 PRK06798 fliD flagellar cappin 26.3 2.8E+02 0.0061 30.2 8.3 30 71-100 404-433 (440)
293 cd00890 Prefoldin Prefoldin is 26.3 4.2E+02 0.0092 22.8 10.3 30 26-55 4-33 (129)
294 cd09234 V_HD-PTP_like Protein- 26.2 7.5E+02 0.016 25.7 15.9 135 34-197 190-324 (337)
295 PF03904 DUF334: Domain of unk 26.0 4.8E+02 0.01 26.5 9.2 13 131-143 135-147 (230)
296 PRK05431 seryl-tRNA synthetase 25.9 4.9E+02 0.011 28.1 10.0 27 33-59 33-59 (425)
297 PF12240 Angiomotin_C: Angiomo 25.8 6.8E+02 0.015 25.0 10.0 28 75-102 133-160 (205)
298 PF12240 Angiomotin_C: Angiomo 25.7 6.8E+02 0.015 25.0 11.4 97 68-179 61-160 (205)
299 KOG3990 Uncharacterized conser 25.5 3.8E+02 0.0083 27.8 8.4 66 108-188 224-289 (305)
300 KOG0964 Structural maintenance 25.5 1.3E+03 0.029 28.4 25.3 59 74-132 268-330 (1200)
301 PF15397 DUF4618: Domain of un 25.5 7.6E+02 0.016 25.4 24.9 54 72-125 57-111 (258)
302 PF05957 DUF883: Bacterial pro 25.2 4.1E+02 0.0089 22.3 8.1 55 39-96 2-56 (94)
303 KOG1265 Phospholipase C [Lipid 25.2 1.3E+03 0.029 28.2 20.5 103 20-138 1014-1118(1189)
304 PF06785 UPF0242: Uncharacteri 24.8 9.1E+02 0.02 26.1 20.6 77 166-253 145-222 (401)
305 PRK05892 nucleoside diphosphat 24.7 2.8E+02 0.006 26.1 7.0 57 37-95 13-71 (158)
306 PRK11281 hypothetical protein; 24.6 1.4E+03 0.03 28.3 27.7 40 75-114 125-165 (1113)
307 TIGR02894 DNA_bind_RsfA transc 24.6 3.3E+02 0.007 26.3 7.4 14 71-84 136-149 (161)
308 PF07851 TMPIT: TMPIT-like pro 24.6 3.8E+02 0.0083 28.5 8.6 17 37-53 6-22 (330)
309 TIGR00414 serS seryl-tRNA synt 24.4 4.2E+02 0.0091 28.6 9.2 65 33-97 35-102 (418)
310 PF02067 Metallothio_5: Metall 24.4 43 0.00092 25.3 1.2 8 376-383 17-24 (41)
311 PF02183 HALZ: Homeobox associ 24.2 1.3E+02 0.0029 22.8 3.9 36 21-60 2-37 (45)
312 PF03962 Mnd1: Mnd1 family; I 24.1 6.5E+02 0.014 24.2 10.9 13 78-90 69-81 (188)
313 COG0419 SbcC ATPase involved i 24.1 1.2E+03 0.027 27.4 31.1 31 100-130 230-260 (908)
314 PF15619 Lebercilin: Ciliary p 24.0 6.8E+02 0.015 24.4 25.3 25 33-57 10-34 (194)
315 PF10186 Atg14: UV radiation r 23.9 6.9E+02 0.015 24.4 18.9 18 78-95 27-44 (302)
316 PF05008 V-SNARE: Vesicle tran 23.8 3.8E+02 0.0083 21.5 7.0 71 47-122 4-74 (79)
317 PF03961 DUF342: Protein of un 23.6 6.2E+02 0.013 27.3 10.3 30 31-60 330-359 (451)
318 PF04100 Vps53_N: Vps53-like, 23.6 9.2E+02 0.02 25.8 12.9 88 32-133 22-109 (383)
319 PLN02678 seryl-tRNA synthetase 23.5 5.6E+02 0.012 28.2 10.0 23 36-58 41-63 (448)
320 PRK14127 cell division protein 23.4 3.8E+02 0.0083 24.1 7.3 53 33-87 42-101 (109)
321 KOG0963 Transcription factor/C 23.4 1.2E+03 0.026 27.0 32.1 37 219-255 289-326 (629)
322 PRK11020 hypothetical protein; 23.3 3.4E+02 0.0074 24.9 6.9 52 40-94 3-54 (118)
323 PRK09343 prefoldin subunit bet 22.7 5.6E+02 0.012 22.9 11.7 40 104-143 73-112 (121)
324 PF04880 NUDE_C: NUDE protein, 22.5 1.2E+02 0.0026 29.2 4.1 44 229-288 1-47 (166)
325 PRK06975 bifunctional uroporph 22.4 8.4E+02 0.018 28.0 11.5 61 33-97 344-404 (656)
326 PTZ00266 NIMA-related protein 22.4 1.3E+03 0.028 28.3 13.3 15 264-279 621-635 (1021)
327 COG2825 HlpA Outer membrane pr 22.3 2.8E+02 0.006 26.5 6.5 30 24-53 47-76 (170)
328 PF00831 Ribosomal_L29: Riboso 22.3 2.2E+02 0.0048 22.3 4.9 48 242-297 10-57 (58)
329 PRK04778 septation ring format 22.2 1.1E+03 0.024 26.3 29.5 123 22-145 254-384 (569)
330 PF07352 Phage_Mu_Gam: Bacteri 21.9 4.4E+02 0.0095 24.1 7.6 33 67-99 28-60 (149)
331 PF11414 Suppressor_APC: Adeno 21.8 2.7E+02 0.0059 23.9 5.7 44 42-93 7-50 (84)
332 PF12037 DUF3523: Domain of un 21.7 9.2E+02 0.02 25.1 22.3 77 152-247 123-199 (276)
333 PF14257 DUF4349: Domain of un 21.6 5.9E+02 0.013 25.2 9.0 54 37-96 134-187 (262)
334 TIGR02680 conserved hypothetic 21.4 1.7E+03 0.036 28.0 27.8 111 18-129 214-324 (1353)
335 PLN02320 seryl-tRNA synthetase 21.4 6.7E+02 0.015 28.1 10.1 66 32-97 97-163 (502)
336 PRK12704 phosphodiesterase; Pr 21.4 1.2E+03 0.025 26.2 22.7 11 404-414 383-393 (520)
337 KOG0999 Microtubule-associated 21.4 1.3E+03 0.028 26.7 17.1 133 33-166 105-250 (772)
338 PF07106 TBPIP: Tat binding pr 21.3 2.1E+02 0.0046 26.6 5.5 60 35-98 72-136 (169)
339 cd09236 V_AnPalA_UmRIM20_like 21.1 9.6E+02 0.021 25.1 16.1 146 34-196 194-339 (353)
340 PF06785 UPF0242: Uncharacteri 21.1 1.1E+03 0.023 25.6 17.3 116 74-196 95-214 (401)
341 PF02994 Transposase_22: L1 tr 20.9 2.5E+02 0.0054 29.9 6.5 22 75-96 102-123 (370)
342 PF09325 Vps5: Vps5 C terminal 20.9 7.3E+02 0.016 23.6 18.8 78 68-145 122-206 (236)
343 PF15372 DUF4600: Domain of un 20.7 6.9E+02 0.015 23.2 9.4 20 29-48 16-35 (129)
344 cd00584 Prefoldin_alpha Prefol 20.4 5.9E+02 0.013 22.3 8.7 32 26-57 4-35 (129)
345 PF11802 CENP-K: Centromere-as 20.2 9.8E+02 0.021 24.8 14.5 70 36-105 53-130 (268)
346 COG1422 Predicted membrane pro 20.0 4.8E+02 0.01 26.0 7.7 47 78-129 72-118 (201)
347 KOG4850 Uncharacterized conser 20.0 47 0.001 32.0 0.8 16 368-383 151-167 (190)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.97 E-value=2.2e-30 Score=284.91 Aligned_cols=312 Identities=25% Similarity=0.239 Sum_probs=259.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQK 104 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k 104 (468)
....+++|||.++..|+.++..++.|+++++.+|..... .+.+|.++|.+||+.||.++..|++++.+|..|++.+
T Consensus 499 ~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~ 574 (913)
T KOG0244|consen 499 EKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPK 574 (913)
T ss_pred hhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Confidence 456789999999999999999999999999999987532 7899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 012231 105 PKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKE 184 (468)
Q Consensus 105 ~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEE 184 (468)
.+++..+.+|..||..||.|||+|+++|++|+++|+.|++.++||++||+++.|++++++.+|+..+.+|..||+|||+|
T Consensus 575 ~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~e 654 (913)
T KOG0244|consen 575 PKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEE 654 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hcccCCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---
Q 012231 185 AFEATKRLKELLESRKALT-HRTAGSKTGNH--SQFQSIEHELEVTVQVQKVSSEYERELEE---MAGVINKLKLEA--- 255 (468)
Q Consensus 185 aaAa~KRLK~lL~~rk~~~-~R~~~~~~~~~--~~ikWLe~ElEv~v~~~Ea~~~LE~llE~---L~~E~~~Lk~e~--- 255 (468)
|+++++||++++..|+..+ ++..-..+|+. .-|.|+++||++++.+++++.+|+.++++ ++.++..|+++.
T Consensus 655 as~~~krlk~a~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~~k~ 734 (913)
T KOG0244|consen 655 ASAANKRLKEALCIRALTSSGQVTLGDNGASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEGKKL 734 (913)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchhhcCchhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999753 33221122222 34779999999999999999999999999 666666665433
Q ss_pred --------Hhchhc--------------cc----------------------------ccccccccCCCCCccchhhhhH
Q 012231 256 --------EMMKEE--------------NS----------------------------RCLLEDDEFDPGVKDSEFSDLK 285 (468)
Q Consensus 256 --------e~l~~~--------------~~----------------------------~~~l~dke~~c~~kd~e~~elk 285 (468)
++.... +. ++..+..+..|++++--+.+|.
T Consensus 735 l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~re~~~~~~~l~ 814 (913)
T KOG0244|consen 735 LGSLEPVMELTSDQISSMQDLIITASKDERIKMRWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSREKGIKKWDLT 814 (913)
T ss_pred HhhhHHHHHHHHHHHHhHHhhhcccccchhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 221100 00 0333455577889999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHhhhhhhhhhc--ccc--------------cccCCCcccccCCCcccccccc
Q 012231 286 EEVARLSNLISQMAVPKAEIIHNKSEVGQA--QSS--------------ASVGSSTNLLETDTSESEFSGV 340 (468)
Q Consensus 286 E~~~~l~~~l~~~e~~k~e~~~~~k~~~~~--~~s--------------~~~~~~~~~~d~d~s~~e~s~~ 340 (468)
++++.....|+-.+.+..+..++.+...+. -+. ....+.+...++|+.++...++
T Consensus 815 ~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~ 885 (913)
T KOG0244|consen 815 QKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQMDTFMPKEEKGHDPINAICLNSTHIFTAADD 885 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhchhhhhccCCcchhhccccchhhHHHH
Confidence 999999999999999999888887776551 100 0111556666777777665543
No 2
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.99 E-value=0.045 Score=60.23 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 012231 97 QFQFSTQKPKGDEAAKRFQDEIQKLRVQK 125 (468)
Q Consensus 97 ~~rLlK~k~ksE~kik~L~~EIq~MK~qK 125 (468)
...|.........+|..|..+|..|...-
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667788888888888887654
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.72 E-value=0.0088 Score=67.51 Aligned_cols=167 Identities=19% Similarity=0.266 Sum_probs=97.1
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHH-HHHHHHHhhHHHHHHH
Q 012231 99 QFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQK----------EIF-QLMKENRRNEYELHLL 167 (468)
Q Consensus 99 rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reK----------EI~-QLKKe~RK~q~ei~kL 167 (468)
.|.+.+++.-..+..|+.-|..-..+|+.|-+++.+|-...+..+....+ |-. .+|...+..+.|+++|
T Consensus 478 ~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~l 557 (697)
T PF09726_consen 478 NLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKL 557 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHH
Confidence 34555666667778888888888888888888888888776665544443 222 2555555556666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 168 SALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGV 247 (468)
Q Consensus 168 e~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~Ea~~~LE~llE~L~~E 247 (468)
+.. |+-|-|....+..-+.++-.- .+.. ..|+|++++.-.+..+=...||.=..-
T Consensus 558 r~e-------lk~kee~~~~~e~~~~~lr~~-----~~e~-------------~~~~e~L~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 558 RRE-------LKQKEEQIRELESELQELRKY-----EKES-------------EKDTEVLMSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHH-----Hhhh-------------hhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 555 444444444444333222110 0111 146666666555555444555552222
Q ss_pred HHHHHHHHHhchhccc------ccccccccCCCCCccchhhhhHHHHHHHHHHHHh
Q 012231 248 INKLKLEAEMMKEENS------RCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQ 297 (468)
Q Consensus 248 ~~~Lk~e~e~l~~~~~------~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~ 297 (468)
-.+|+.+|+---++.- .+.++- +|.||.|||-+|++|..++=.
T Consensus 613 EtriKldLfsaLg~akrq~ei~~~~~~~-------~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 613 ETRIKLDLFSALGDAKRQLEIAQGQLRK-------KDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCc
Confidence 3455555553332211 144555 999999999999999887654
No 4
>PRK03918 chromosome segregation protein; Provisional
Probab=97.17 E-value=0.69 Score=52.66 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhchhccccccccc
Q 012231 241 LEEMAGVINKLKLEAEMMKEENSRCLLED 269 (468)
Q Consensus 241 lE~L~~E~~~Lk~e~e~l~~~~~~~~l~d 269 (468)
...+...+..|+..++++.+....|.++.
T Consensus 414 ~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~ 442 (880)
T PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVCG 442 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 33344555566666666655444577644
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=0.61 Score=56.22 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQ 115 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~ 115 (468)
.|..+..++..++..++.+...+....+ +. .+ ++.+..+..++.++..|...... +.....+...+|..|+
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~---s~-~ele~ei~~~~~el~~l~~~~e~---l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL--DR---TV-QQVNQEKQEKQHELDTVVSKIEL---NRKLIQDQQEQIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc--cC---CH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4556667777777777777666653222 11 11 33344455555555554433322 2333333445555555
Q ss_pred HHHHHHHHHHHHHHH
Q 012231 116 DEIQKLRVQKVQLQC 130 (468)
Q Consensus 116 ~EIq~MK~qKVqL~K 130 (468)
..|..++..+.+|-.
T Consensus 864 ~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 864 SKTNELKSEKLQIGT 878 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555545444444433
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=96.79 E-value=1.5 Score=50.27 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012231 235 SEYERELEEMAGVINKLKL 253 (468)
Q Consensus 235 ~~LE~llE~L~~E~~~Lk~ 253 (468)
..|+..++++..++..|..
T Consensus 408 ~~~e~~l~~l~~~~~~l~~ 426 (880)
T PRK02224 408 GNAEDFLEELREERDELRE 426 (880)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.75 E-value=0.65 Score=55.39 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 012231 97 QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQL 128 (468)
Q Consensus 97 ~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL 128 (468)
+..+.......+..|..|+.++..+...-..+
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 255 LEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666666655544444
No 8
>PRK11637 AmiB activator; Provisional
Probab=96.73 E-value=0.35 Score=51.28 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=10.6
Q ss_pred cCCCCCCccchhhhhh
Q 012231 425 DCCTRKQPLREIGNKL 440 (468)
Q Consensus 425 d~~~~~kpl~dign~~ 440 (468)
|.+....||..+|+|-
T Consensus 387 ~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 387 AQVRAGQPIALVGSSG 402 (428)
T ss_pred CEECCCCeEEeecCCC
Confidence 3445677888888763
No 9
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.64 E-value=1.8 Score=49.28 Aligned_cols=122 Identities=23% Similarity=0.194 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 012231 28 DDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLK-EA---HLEKMNALEGQVLELKKKLELQFQFST- 102 (468)
Q Consensus 28 ~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLk-ee---yrkKL~eLE~ql~eLkkKq~e~~rLlK- 102 (468)
.++..|.++|..||.++..+-+|||-+..++.++. ++-+.+|- ++ .---+..|..+--.|-+++-.++.+.|
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk---~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkK 478 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLK---KELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKK 478 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46889999999999999999999999987766431 11111111 11 112233344444444444444333322
Q ss_pred ----------cccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 012231 103 ----------QKPKGDEAAKRFQDEIQKLRVQ---KVQLQCKLKLEAVQFRLCKASLQKEIFQ 152 (468)
Q Consensus 103 ----------~k~ksE~kik~L~~EIq~MK~q---KVqL~KKMKEEsekfR~~k~~reKEI~Q 152 (468)
+-.+.-+.|..|+.|.+.+|.- |...-|.+++-.+++.......+++...
T Consensus 479 LRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~ 541 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSN 541 (961)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1123345777777777777653 3444455555555554444444444443
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.62 E-value=2.1 Score=49.70 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=4.0
Q ss_pred hhHHHHHHHHH
Q 012231 283 DLKEEVARLSN 293 (468)
Q Consensus 283 elkE~~~~l~~ 293 (468)
++..++..+..
T Consensus 480 ~l~~~l~~l~~ 490 (1164)
T TIGR02169 480 RVEKELSKLQR 490 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 11
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=2.3 Score=49.91 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---hcccCCCC
Q 012231 135 EAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALT---HRTAGSKT 211 (468)
Q Consensus 135 EsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~---~R~~~~~~ 211 (468)
+...-++.+......+..++.+.-..+.++.+.+-.+... ++|....++||..+-..++..- +|.+ .
T Consensus 315 ~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l-------~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s---q 384 (1200)
T KOG0964|consen 315 QITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSL-------VDEEKRLKKRLAKLEQKQRDLLAKQGRYS---Q 384 (1200)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHhhcccc---c
Confidence 3333334444444455556666667777777776666543 2444555555554444333221 2322 1
Q ss_pred CCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 212 GNH--SQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEM 257 (468)
Q Consensus 212 ~~~--~~ikWLe~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~ 257 (468)
.+. .+=+||-.||+.+-+ +....-.+.+-|..+++.++.++..
T Consensus 385 Fssk~eRDkwir~ei~~l~~---~i~~~ke~e~~lq~e~~~~e~~l~~ 429 (1200)
T KOG0964|consen 385 FSSKEERDKWIRSEIEKLKR---GINDTKEQENILQKEIEDLESELKE 429 (1200)
T ss_pred cCcHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222 233499999998775 3333333333355566666555443
No 12
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=96.33 E-value=0.0022 Score=48.00 Aligned_cols=38 Identities=39% Similarity=0.951 Sum_probs=33.8
Q ss_pred CcccccCCCCccccCccccccCCCCCCCCcccCCcccCCCC
Q 012231 351 GVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNRE 391 (468)
Q Consensus 351 ~~cc~csk~s~ckt~~c~c~~~~~~c~~~c~c~~~kc~n~~ 391 (468)
..+|+|.| |.|-...|+|-++|..|++.|.|. .|.|..
T Consensus 3 ~~gC~Ckk-s~Clk~YC~Cf~~g~~C~~~C~C~--~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKK-SKCLKLYCECFQAGRFCTPNCKCQ--NCKNTE 40 (42)
T ss_pred CCCCcccC-cChhhhhCHHHHCcCcCCCCcccC--CCCCcC
Confidence 36799976 689999999999999999999996 899976
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.30 E-value=2.9 Score=50.69 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 64 TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ----FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 64 ~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~----~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
.+++....+...|..++.+++.++.++....... ..+......-...+..|+.+......+...+..-|++=+.+|
T Consensus 298 ~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1311)
T TIGR00606 298 GTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRL 377 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777888888888888888777766553 222233333334455555555555555555555555444443
Q ss_pred HHH--------HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012231 140 RLC--------KASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRL 192 (468)
Q Consensus 140 R~~--------k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRL 192 (468)
.-- ...-..=+..+.+........+..+...+......++-+..++..--...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~ 438 (1311)
T TIGR00606 378 ELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGL 438 (1311)
T ss_pred CcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 300 01122234456667777777777888888877777777776665554433
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.22 E-value=3.5 Score=47.94 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHHhh
Q 012231 282 SDLKEEVARLSNLISQM 298 (468)
Q Consensus 282 ~elkE~~~~l~~~l~~~ 298 (468)
..+..++..+...+..+
T Consensus 472 ~~~~~~l~~l~~~l~~l 488 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKL 488 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444433333
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.21 E-value=4.3 Score=51.11 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~ 171 (468)
+.+..+..|+..+........+|.+++++=..+...+...-+.|-+++-|..+.+..--..|++..
T Consensus 1073 kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELK 1138 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555555555554444444444444333333333
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.06 E-value=1.4 Score=44.26 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAA 111 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~ki 111 (468)
+|...+..|+..+...+.+.+.+...+...... -.....--++|+..+..++..|.+++.+.......+ .....+..+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~-~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~ 91 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKA-LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHH
Confidence 566666777766666666666665555432110 111222236788888999999999998888877666 788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 012231 112 KRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKR 191 (468)
Q Consensus 112 k~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KR 191 (468)
..|..||+..+.+.+.|...|-+=.+. ....+++|.-|+....+.+..+..++....---..+..+..++..-+-.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~----~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~ 167 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEE----IEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887766544333 3344556666666666666666666555554444444444444443334
Q ss_pred HH
Q 012231 192 LK 193 (468)
Q Consensus 192 LK 193 (468)
|+
T Consensus 168 L~ 169 (239)
T COG1579 168 LK 169 (239)
T ss_pred HH
Confidence 43
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.87 E-value=4.8 Score=46.54 Aligned_cols=17 Identities=29% Similarity=0.562 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIE 52 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERD 52 (468)
.+..|+.++..++.+..
T Consensus 678 e~~~l~~~~~~l~~~l~ 694 (1179)
T TIGR02168 678 EIEELEEKIEELEEKIA 694 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=4.9 Score=46.44 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHH
Q 012231 147 QKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEV 226 (468)
Q Consensus 147 eKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv 226 (468)
.-||.-+.+.--..-.+|..|++.-+.++.-|.+-+-|-.-++-+||.....-+ .+ .... .+|+.
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~---~~--------~~~~----s~L~a 535 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK---ET--------TQRK----SELEA 535 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc---Cc--------chHH----HHHHH
Confidence 346777777777777888888888888888888888888888887774422111 11 1111 34555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 227 TVQVQ-KVSSEYERELEEMAGVINKLKLEAEM 257 (468)
Q Consensus 227 ~v~~~-Ea~~~LE~llE~L~~E~~~Lk~e~e~ 257 (468)
+...+ .++.++++++++|.+|.+.-.++.+.
T Consensus 536 a~~~ke~irq~ikdqldelskE~esk~~eidi 567 (1118)
T KOG1029|consen 536 ARRKKELIRQAIKDQLDELSKETESKLNEIDI 567 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55433 45678888888888887766555443
No 19
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=4.6 Score=47.74 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 012231 35 KRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRF 114 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L 114 (468)
.+|.+.+.+++..++|.+.+-.+|....+. ...-..|+++|.-++-+|-- -.-+..+.++.+++.....-.+.+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~-~~kf~~l~~ql~l~~~~l~l--~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQ-SQKFRDLKQQLELKLHELAL--LEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 357778888888888888887777654331 34456677777665554432 222334556777777666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 115 QDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENR 158 (468)
Q Consensus 115 ~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~R 158 (468)
+.+|..-...--+-+-++.-=-.....|+..+++++.-|.++-.
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik 797 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIK 797 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHH
Confidence 77766554433333333333333445677777777776666543
No 20
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.69 E-value=5.6 Score=45.99 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012231 37 VHELEQENDTLKREIEELRFKV 58 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L 58 (468)
+..|+.++..++.+.+.+...+
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l 693 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKI 693 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 21
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.61 E-value=0.29 Score=44.16 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 18 SSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 18 ~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
|+.+.=..+.+-=.+.+..+..|..++..++.+||.+-.++-... .....+ ......+..|+.++.+|+.+....
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~----~~~e~~-~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM----EENEEL-RALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455666677777777777777777777765421 111222 345577888999998888766554
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHH
Q 012231 98 FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQ 127 (468)
Q Consensus 98 ~rLlK~k~ksE~kik~L~~EIq~MK~qKVq 127 (468)
-.| --...+.+..|+.+|.+||..=..
T Consensus 88 Lel---lGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 88 LEL---LGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHH---hcchHHHHHHHHHHHHHHHHHHHH
Confidence 444 455578899999999999975333
No 22
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.53 E-value=1.6 Score=43.82 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKT- 182 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKt- 182 (468)
-...-..+..|+.+|..++.++..|-.++.+=-..+..........|..|..+...-..+|......++.--. +|-..
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~-~K~~Ld 296 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD-VKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-HHHhHH
Confidence 3345567778888888888888888888876666666666555566666666655555555555555443222 12222
Q ss_pred HHHHHHHH
Q 012231 183 KEAFEATK 190 (468)
Q Consensus 183 EEaaAa~K 190 (468)
-|+++.++
T Consensus 297 ~EIatYR~ 304 (312)
T PF00038_consen 297 AEIATYRK 304 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 26666655
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.28 E-value=3.7 Score=41.24 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=24.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 24 SPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 24 ~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
.....++..|+..|..|...|..+..|+..+...+.+
T Consensus 43 ~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 43 EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp ---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence 3344567777777777777777777777777666554
No 24
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.27 E-value=6.7 Score=44.14 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKP 105 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ 105 (468)
.+.....-++.+.+|+.++..+..+.+.+...+.... ..... -...+.+++.+..+|.+...-+.++..+-.
T Consensus 319 ~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~----~~~~q----~~~e~~~~~~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 319 EEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLK----SSLKQ----LEEELEEKEAENEELEEELKLKKKTVELLP 390 (594)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556677788888888888877777776665321 11222 233444555555566666666666666666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKE-------NRRNEYELHLLSALNQRLKLVL 178 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe-------~RK~q~ei~kLe~~~~kQ~~VL 178 (468)
..+..|.+|+.=|+.=....+.|..+. +.+ +.....|+..|+.. ..+...+|+.+...-+.-..-+
T Consensus 391 d~e~ni~kL~~~v~~s~~rl~~L~~qW----e~~---R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 391 DAEENIAKLQALVEASEQRLVELAQQW----EKH---RAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776666665555554432 122 22333444444433 3344455555655555555556
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 012231 179 QRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEE---MAGVINKLKL 253 (468)
Q Consensus 179 KRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~Ea~~~LE~llE~---L~~E~~~Lk~ 253 (468)
+.|.|....+...+. +. +....+--+..+=+|++-.++....+.++-+.| |-+||+.|..
T Consensus 464 ~~Kee~~~qL~~e~e----~~-----------~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 464 RQKEELYKQLVKELE----KL-----------PKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHH----hC-----------CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666444433222 11 111222234555555555666666666666666 5666655543
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.20 E-value=13 Score=47.09 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012231 97 QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQ---CKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQR 173 (468)
Q Consensus 97 ~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~---KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~k 173 (468)
...|.+...+.+..+..|...+...+..+..+- +++..+..-++.+-......+..|..+..+.+.++..|+.....
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345566667777777777777777776666655 56666666666666666777777777777777777777776665
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 012231 174 LKLVLQRKTKEAFEATKRLKE 194 (468)
Q Consensus 174 Q~~VLKRKtEEaaAa~KRLK~ 194 (468)
-...+-..+..+..+..++++
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~e 1108 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKE 1108 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444444433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.18 E-value=10 Score=45.78 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
+|......++.++..++..+..+..+..++-..|.
T Consensus 597 d~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~ 631 (1201)
T PF12128_consen 597 DYAASEEELRERLEQAEDQLQSAEERQEELEKQLK 631 (1201)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777787777777777766666555554
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.12 E-value=7 Score=43.57 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=67.7
Q ss_pred chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--------------ChHHHHHHHHHHHHHHHHHHHHH
Q 012231 25 PAVDDKE---HYEKRVHELEQENDTLKREIEELRFKVASVSST--------------PDVAAQKLKEAHLEKMNALEGQV 87 (468)
Q Consensus 25 d~q~mk~---qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~--------------~~~~~~KLkeeyrkKL~eLE~ql 87 (468)
+++.|+. -|=.|+.-||.+...|+.+++.+....+.-.+. .-+...+=...|+..+.-|..++
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444443 488999999999999999999998776543221 11222344467888888999999
Q ss_pred HHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHH
Q 012231 88 LELKKKLELQFQFSTQK----PKGDEAAKRFQDEIQKLRVQ 124 (468)
Q Consensus 88 ~eLkkKq~e~~rLlK~k----~ksE~kik~L~~EIq~MK~q 124 (468)
.+|+++..+..+...-- -.....+..|++||..+|+-
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr 163 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR 163 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 99998887765444321 11355677777777777653
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.95 E-value=7.8 Score=43.22 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHH
Q 012231 103 QKPKGDEAAKRFQDEIQKLRVQKVQLQC--------------KLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLS 168 (468)
Q Consensus 103 ~k~ksE~kik~L~~EIq~MK~qKVqL~K--------------KMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe 168 (468)
.-+.++..+.-|..|+..|...+-+.|- ++-+.+...+..+....+|...|.-.......+|.+|.
T Consensus 298 ~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~ 377 (546)
T PF07888_consen 298 QLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLS 377 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3355677777888888888777655443 33333333344444444444444433333334444444
Q ss_pred HHHHHHHHHHHHHhHH
Q 012231 169 ALNQRLKLVLQRKTKE 184 (468)
Q Consensus 169 ~~~~kQ~~VLKRKtEE 184 (468)
+....-+.-|+-+-.|
T Consensus 378 ~el~~~e~~lqEer~E 393 (546)
T PF07888_consen 378 RELQMLEEHLQEERME 393 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 29
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.07 E-value=18 Score=43.74 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=78.4
Q ss_pred HHHHHHhhHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HhhhcccCCC--CCCchh-HHHHHHH
Q 012231 153 LMKENRRNEYELHL--LSALNQRLKLVLQRKTKEAFEATKRLKELLESRK----ALTHRTAGSK--TGNHSQ-FQSIEHE 223 (468)
Q Consensus 153 LKKe~RK~q~ei~k--Le~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk----~~~~R~~~~~--~~~~~~-ikWLe~E 223 (468)
|+++........-+ ++..++.+..+++--++...+.++++ -|..+- .+...-+.-. .+-.++ ..|++.|
T Consensus 652 l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e 729 (1317)
T KOG0612|consen 652 LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAE 729 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 45555554444555 88889999999999999999999988 222221 1111111000 001112 3388877
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-cc---ccccccccCCCCCccchhhhhHHHHHHHHHHH
Q 012231 224 LEVTVQ----VQKVSSEYERELEEMAGVINKLKLEAEMMKEE-NS---RCLLEDDEFDPGVKDSEFSDLKEEVARLSNLI 295 (468)
Q Consensus 224 lEv~v~----~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~-~~---~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l 295 (468)
++.+-. ..+...++...-+.+..+...|...++.-... ++ .-..++.++.. +|-.+.++..++.|-.+=
T Consensus 730 ~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t---~~~Ekq~~~~~~~l~~~K 806 (1317)
T KOG0612|consen 730 LEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT---KMLEKQLKKLLDELAELK 806 (1317)
T ss_pred HHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc---HHHHHHHHHHHHHHHHHH
Confidence 775432 33444555555555555555555433322111 10 11145555555 565666666666666555
Q ss_pred HhhcchhHHH
Q 012231 296 SQMAVPKAEI 305 (468)
Q Consensus 296 ~~~e~~k~e~ 305 (468)
++++.+..++
T Consensus 807 ~~~e~~~~q~ 816 (1317)
T KOG0612|consen 807 KQLEEENAQL 816 (1317)
T ss_pred HHHHHHHHHh
Confidence 6666554443
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.04 E-value=14 Score=42.37 Aligned_cols=207 Identities=15% Similarity=0.183 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHhcc
Q 012231 36 RVHELEQENDTLKREIEE-------LRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLE-LQ---FQFSTQK 104 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDe-------ll~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~-e~---~rLlK~k 104 (468)
-+..||.+++.|+.|+.. |...+.+.....-.-...| ...++.-..|+.++..|.+... +- ..|.+.-
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL-~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSEL-SQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777544 3344333322111111222 3444555555555555544322 21 2222222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 105 PKGDEAAKRFQDEIQKLRVQKVQ-------------LQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 105 ~ksE~kik~L~~EIq~MK~qKVq-------------L~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~ 171 (468)
.....+-..|+..+..-++.|-. ..+. +-++.-|.-+..-|.||-+|+.+.+..+.++..|+...
T Consensus 498 ~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~--e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ--ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223344444444443322 1111 44555566677788999999999999999999999887
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 012231 172 QRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEE---MAGVI 248 (468)
Q Consensus 172 ~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~Ea~~~LE~llE~---L~~E~ 248 (468)
+.-...-+.--.|+.++.--|..+.++-. .-.. +-. .=-||-.+|=-++ .+|++++|..-.. -..||
T Consensus 576 ~~lr~~~~e~~~~~e~L~~aL~amqdk~~----~LE~--sLs--aEtriKldLfsaL--g~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 576 QELRKYEKESEKDTEVLMSALSAMQDKNQ----HLEN--SLS--AETRIKLDLFSAL--GDAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHH--hhh--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 32111001112244444443333322111 0000 000 0014444444444 4788888765444 45567
Q ss_pred HHHHHHH
Q 012231 249 NKLKLEA 255 (468)
Q Consensus 249 ~~Lk~e~ 255 (468)
..|+..+
T Consensus 646 ~~lk~ki 652 (697)
T PF09726_consen 646 EELKAKI 652 (697)
T ss_pred HHHHHHH
Confidence 7776633
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.64 E-value=18 Score=42.13 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKV 58 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L 58 (468)
++..-..-+.+|..||.-+..++.|+..|...+
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455666666666666666666665443
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.57 E-value=14 Score=44.21 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF-----------QF 100 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~-----------rL 100 (468)
+|+..+..++..|...|...+++-..+.. ...++ +++++++.+-|+++..+..-...+. -+
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~-------~~~k~-~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~ 349 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEE-------KQGKI-EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL 349 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 46667777777777777777776666542 22333 4566666666666665554333221 11
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012231 101 STQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF----RLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKL 176 (468)
Q Consensus 101 lK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf----R~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~ 176 (468)
.+....-+..+..-.+.|+..|.-.-.|=+++=..-+++ -....+.+.++.+|+++--+-+..+.+|....+.-..
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333333444444444443333333333322222 2333445566666777666666666666655544444
Q ss_pred HHHHHhHHHHH
Q 012231 177 VLQRKTKEAFE 187 (468)
Q Consensus 177 VLKRKtEEaaA 187 (468)
-++..-||...
T Consensus 430 ~~~~~~ee~~~ 440 (1074)
T KOG0250|consen 430 KAKEEEEEKEH 440 (1074)
T ss_pred HHHHhHHHHHH
Confidence 44444444433
No 33
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.38 E-value=23 Score=42.64 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFK 57 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~ 57 (468)
++..+|..++..+..+..+...+-..
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~ 696 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNE 696 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444333
No 34
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.31 E-value=17 Score=40.76 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=20.3
Q ss_pred ccchhhhhHHHHHHHHHHHHhhcchhHH
Q 012231 277 KDSEFSDLKEEVARLSNLISQMAVPKAE 304 (468)
Q Consensus 277 kd~e~~elkE~~~~l~~~l~~~e~~k~e 304 (468)
||.+|..|.|+...|+.-|..|=--+.-
T Consensus 347 kd~~i~~mReec~~l~~Elq~LlD~ki~ 374 (546)
T KOG0977|consen 347 KDAEIAKMREECQQLSVELQKLLDTKIS 374 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHhH
Confidence 8888999988888877777665444443
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=93.21 E-value=19 Score=41.22 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 012231 49 REIEELRFKVASVSST--PDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRV 123 (468)
Q Consensus 49 ~ERDell~~L~~~ss~--~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~ 123 (468)
.+|.+++..+-++... .......+..+|..++..++..+..+.........+..........+..|+.++..+..
T Consensus 145 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777666543221 11223344445555555555555555444444333333333344444444444444443
No 36
>PRK11637 AmiB activator; Provisional
Probab=93.10 E-value=14 Score=39.32 Aligned_cols=27 Identities=0% Similarity=-0.144 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKL 134 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKE 134 (468)
+..|..++.+|...+..=.++++-|-.
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444433
No 37
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=93.07 E-value=0.059 Score=45.78 Aligned_cols=36 Identities=44% Similarity=1.223 Sum_probs=23.2
Q ss_pred cccccCCCCcc-ccCccccccCCCC--------------------CCCCcccCCcccCCC
Q 012231 352 VCCSCSKKSSC-KTSKCECRVSGGS--------------------CGTSCGCAANKCTNR 390 (468)
Q Consensus 352 ~cc~csk~s~c-kt~~c~c~~~~~~--------------------c~~~c~c~~~kc~n~ 390 (468)
.+|+|. ..| ....|.|....+. |++.|+|.+ .|.||
T Consensus 47 ~~C~C~--~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~-~C~NR 103 (103)
T PF05033_consen 47 QGCDCS--GDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSP-SCRNR 103 (103)
T ss_dssp S----S--SSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-T-TSTT-
T ss_pred ccCccC--CCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCC-CCCCC
Confidence 588994 469 7899999887763 999999998 99998
No 38
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.87 E-value=23 Score=41.24 Aligned_cols=156 Identities=20% Similarity=0.259 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL---------- 96 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e---------- 96 (468)
..+...|+.=+.+.+--+..+...|+..-.. ....+ +.|+..+..+...+..|++.+.+
T Consensus 432 ~~~~~~lEea~~eker~~e~l~e~r~~~e~e----------~~Eel-e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~ke 500 (775)
T PF10174_consen 432 DEALETLEEALREKERLQERLEEQRERAEKE----------RQEEL-ETYQKELKELKAKLESLQKELSEKELQLEDAKE 500 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 3455666666666666666665555443221 12233 45666666666666666666543
Q ss_pred -HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012231 97 -QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKL--EAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQR 173 (468)
Q Consensus 97 -~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKE--EsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~k 173 (468)
...|.....+.+..|++|..++...+--=.+|..++.. ....|+.--...++++...+.+..+.+.+|-+|-..-..
T Consensus 501 e~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~ 580 (775)
T PF10174_consen 501 EASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILRE 580 (775)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888899999999999998888777777777755 113555666677788888888899999888888754333
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 012231 174 LKLVLQRKTKEAFEATKRLK 193 (468)
Q Consensus 174 Q~~VLKRKtEEaaAa~KRLK 193 (468)
-.+-==-|.-++..+.+.|+
T Consensus 581 ~E~EK~~ke~ki~~LekeLe 600 (775)
T PF10174_consen 581 AENEKNDKEKKIGELEKELE 600 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 33322234444555555443
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=92.62 E-value=23 Score=40.70 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e 96 (468)
.+|...|.+++.++..|+....+
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 408 GNAEDFLEELREERDELREREAE 430 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554444
No 40
>PF14282 FlxA: FlxA-like protein
Probab=92.02 E-value=2.1 Score=37.51 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
...|..|+.+|..|+.++..|-.. ..-+++....-...+...|..|+.+|..|+..+.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~----~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD----SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999998877654 1113344444457778888888888888877766554
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.93 E-value=41 Score=41.96 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-cc--ccccccccCCCCCccchhhhhHHHHHHHHHHH
Q 012231 219 SIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEE-NS--RCLLEDDEFDPGVKDSEFSDLKEEVARLSNLI 295 (468)
Q Consensus 219 WLe~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~-~~--~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l 295 (468)
|+++-=..+-........++..+..+...+..+......+... |. +-..|+ +.++ -++.. .+..-|..-+
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~-----~~~~-~~~~~-~~~~~~~~~~ 515 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWD-----VARE-LLRRL-REQRHLAEQL 515 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH-----HHHH-HHHHh-HHHHHHHHhh
Confidence 5555445555555566666666666666666666554433221 21 222232 0000 01111 1334455566
Q ss_pred HhhcchhHHHhhh
Q 012231 296 SQMAVPKAEIIHN 308 (468)
Q Consensus 296 ~~~e~~k~e~~~~ 308 (468)
.++..+..+|...
T Consensus 516 ~~~~~~~~~l~~~ 528 (1486)
T PRK04863 516 QQLRMRLSELEQR 528 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666653
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.28 E-value=40 Score=40.52 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012231 216 QFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMM 258 (468)
Q Consensus 216 ~ikWLe~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l 258 (468)
.+.||..|++.+= ++...|...++++...+..-+++++.+
T Consensus 402 k~~~L~~evek~e---~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLE---EQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4669999888754 355555555555555555544444433
No 43
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.16 E-value=52 Score=41.69 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccchHHHHHHHHHHHHHHHHHH-------HHHHH--------
Q 012231 70 QKLKEAHLEKMNALEGQVLELKKKLELQFQ----FSTQKPKGDEAAKRFQDEIQKLRVQK-------VQLQC-------- 130 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r----LlK~k~ksE~kik~L~~EIq~MK~qK-------VqL~K-------- 130 (468)
.+.-+-|++.+..|+.+-..|+.-...|.+ +...-......+..|..||..+|..+ +.|..
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e 774 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAE 774 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777888887777777766665544 22233344555556666665555443 22211
Q ss_pred --------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012231 131 --------------------KLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATK 190 (468)
Q Consensus 131 --------------------KMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~K 190 (468)
---+.-.+|...-...+++|..||++....-..++.|...+..+-.=++...++......
T Consensus 775 ~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~ 854 (1822)
T KOG4674|consen 775 QESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELK 854 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 111111233334445678889999999999999999999999998888888888877777
Q ss_pred HHHHHHHH
Q 012231 191 RLKELLES 198 (468)
Q Consensus 191 RLK~lL~~ 198 (468)
.+...+..
T Consensus 855 ~~~~~l~~ 862 (1822)
T KOG4674|consen 855 SLLTSLDS 862 (1822)
T ss_pred HHHHHHHH
Confidence 66655543
No 44
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.07 E-value=35 Score=39.44 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012231 69 AQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQK 148 (468)
Q Consensus 69 ~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reK 148 (468)
..-++++|-++|.+||++++.+-+......+-++.- +.+-+.+-+.. .=+.|-.+|..+-+|.++.-+......-
T Consensus 400 ~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ksl-k~ela~~l~~D----eLaEkdE~I~~lm~EGEkLSK~ql~qs~ 474 (961)
T KOG4673|consen 400 VSSLREEYHQRVATLEKKVQALTKERDALRREQKSL-KKELAAALLKD----ELAEKDEIINQLMAEGEKLSKKQLAQSA 474 (961)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhhhhH----HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346789999999999999988876554433322210 00111111111 2234556666666666666666666666
Q ss_pred HHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHhH
Q 012231 149 EIFQLMKENRRNE-------YELHLLSALNQRLKLVLQRKTK 183 (468)
Q Consensus 149 EI~QLKKe~RK~q-------~ei~kLe~~~~kQ~~VLKRKtE 183 (468)
-|-.|+...+-.+ ..|.+|+...++-+.||.-|.|
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee 516 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEE 516 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 6666665555444 3566777777777777766654
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.97 E-value=45 Score=40.54 Aligned_cols=49 Identities=33% Similarity=0.413 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQC 130 (468)
Q Consensus 78 kKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~K 130 (468)
.+|.+++.+|.+|++...+.. ....+ ..+|+.|++.|..|---+|+-++
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~q---e~~~K-k~~i~~lq~~i~~i~~e~~q~qk 906 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQ---EKAAK-KARIKELQNKIDEIGGEKVQAQK 906 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhhH-HHHHHHHHHHHHHhhchhhHHhH
Confidence 445566666666666555543 22223 67788888888888777776543
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.83 E-value=32 Score=41.83 Aligned_cols=122 Identities=21% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 77 LEKMNALEGQVLELKKKLELQFQFSTQKPK-------GDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 77 rkKL~eLE~ql~eLkkKq~e~~rLlK~k~k-------sE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
-++|.+|+..+.+|+.+......-.+.-++ ....++..-.+|+.-=....+|+.+--+.+.-.|+--.+..-|
T Consensus 1618 ~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~e 1697 (1758)
T KOG0994|consen 1618 TQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTE 1697 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 456666666666666665443332222111 1122222222555443333444433333333333222222333
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012231 150 IFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLES 198 (468)
Q Consensus 150 I~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~ 198 (468)
-..|--+....-..|..|+..+..-++.|-+|..|++-+++|++..|..
T Consensus 1698 A~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1698 AEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444445555666788899989999999999999999999999987764
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.66 E-value=48 Score=40.40 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELR 55 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell 55 (468)
..+|++.|..+..++.+|.
T Consensus 467 ~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 467 DKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554
No 48
>PRK09039 hypothetical protein; Validated
Probab=90.46 E-value=20 Score=37.58 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELR 55 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell 55 (468)
.-.+...|..++.++..++.++..|=
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELA 66 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34456667777777777777766643
No 49
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.38 E-value=30 Score=37.60 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPD-------VAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQ 103 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~-------~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~ 103 (468)
.+-...|..++.+|...+.++..|...|......-+ .....+ ...++.|.+++..|..|.....++...+..
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l-~~~~~~I~~~~~~l~~l~~q~r~qr~~La~ 119 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL-KKLRKQIADLNARLNALEVQEREQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666665555543211000 111122 445677777888888777777555444332
Q ss_pred ccchH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHH
Q 012231 104 KPKGD------------------EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELH 165 (468)
Q Consensus 104 k~ksE------------------~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~ 165 (468)
.-... ..-.+|-.-+..|-.-.-+.+..+.... ++|..++......+.++.
T Consensus 120 ~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~-----------~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 120 QLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATL-----------KQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 11111 1112233333333333333333333332 344444455555555555
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 012231 166 LLSALNQRLKLVLQRKTKE 184 (468)
Q Consensus 166 kLe~~~~kQ~~VLKRKtEE 184 (468)
.+......|..-|.+..+|
T Consensus 189 ~~~~eq~~q~~kl~~~~~E 207 (420)
T COG4942 189 TLLSEQRAQQAKLAQLLEE 207 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666665
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.19 E-value=63 Score=41.02 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
..+..|..++.+|+..|+.|++++.+ ...+-.+....+..+..++.-|..|+.-.-.++..+..- +.--+..+-+
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~----~~~~~~le~k 873 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSV----STNIAKLEIK 873 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44566677777777777777777655 455666666666667766666666665444444444333 3333334446
Q ss_pred HHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHH
Q 012231 150 IFQLMKENRRNEYELHLLSA------LNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHE 223 (468)
Q Consensus 150 I~QLKKe~RK~q~ei~kLe~------~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~E 223 (468)
+..|.+.-+-...+..-|.. .+..-+. |+...+++.-+..+|+..+..-..- ...+.-.++-
T Consensus 874 ~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~-Lr~~~eq~~~l~~~L~~a~s~i~~y-----------qe~~~s~eqs 941 (1822)
T KOG4674|consen 874 LSELEKRLKSAKTQLLNLDSKSSNEDATILEDT-LRKELEEITDLKEELTDALSQIREY-----------QEEYSSLEQS 941 (1822)
T ss_pred HHHHHHHHHHhHHHHhhccccchhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 66777766666666655553 1222222 6777777777766666655433210 0111122222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 012231 224 LEVTVQ-VQKVSSEYERELEEMAGVINKLKLEAEMMKEE 261 (468)
Q Consensus 224 lEv~v~-~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~ 261 (468)
|+.+-+ .++.+..++..++.+..++..|+.++-.+..+
T Consensus 942 l~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~ 980 (1822)
T KOG4674|consen 942 LESVKSELDETRLELEAKIESLHKKITSLEEELSELEKE 980 (1822)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 45666777777777777777777666655555
No 51
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.11 E-value=4.3 Score=38.79 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDE 109 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~ 109 (468)
-...+.++..|..++..+.+.+.++...|......-..-..++ .+....|..|+.++..|+.+......-++.+. .
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~-~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~---k 144 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKEL-SEKERRLAELEAELAQLEEKIKDLEEELKEKN---K 144 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3456778888888888888888888777765432211111222 34455566666666666655555444443332 2
Q ss_pred HHHHHHHHHHHHH
Q 012231 110 AAKRFQDEIQKLR 122 (468)
Q Consensus 110 kik~L~~EIq~MK 122 (468)
.+..|+.|+..+.
T Consensus 145 ~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 145 ANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555544
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.83 E-value=33 Score=37.16 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLELQFQFSTQKP-------------KGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRL 141 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~-------------ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~ 141 (468)
+|...|+.++.++..++............-. .....+..|.++|..+..+...|...+.+-.+..++
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~ 331 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE 331 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655554433221 116677777777777777777766666655555444
Q ss_pred HHHHhhHHHHHHHHHHHhhHHH
Q 012231 142 CKASLQKEIFQLMKENRRNEYE 163 (468)
Q Consensus 142 ~k~~reKEI~QLKKe~RK~q~e 163 (468)
+.. ...++..++...+.....
T Consensus 332 ~~~-~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 332 FNE-QSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHH-HHHHHHHHHHHHHHHHHH
Confidence 333 344444444444443333
No 53
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.74 E-value=8.1 Score=35.97 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=40.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 19 SSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSST-PDVAAQKLKEAHLEKMNALEGQVLELK 91 (468)
Q Consensus 19 ~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~-~~~~~~KLkeeyrkKL~eLE~ql~eLk 91 (468)
.+.+..++..|. ..|.+|..++..+..+...|..+|.+..+. +.+.....-.+.+..+..|+.+|..|+
T Consensus 67 ~~~s~eel~~ld----~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 67 EVPSPEELAELD----AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444454444 449999999999999999998888876543 233333333444444444444444444
No 54
>PRK01156 chromosome segregation protein; Provisional
Probab=89.17 E-value=50 Score=38.34 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHhhcchhHHHhhh
Q 012231 281 FSDLKEEVARLSNLISQMAVPKAEIIHN 308 (468)
Q Consensus 281 ~~elkE~~~~l~~~l~~~e~~k~e~~~~ 308 (468)
+.++++++..|..-+..+.....++...
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~ 438 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALREN 438 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655543
No 55
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.13 E-value=32 Score=36.05 Aligned_cols=163 Identities=25% Similarity=0.285 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFK-------VASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQ 103 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~-------L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~ 103 (468)
.+...+|..|+.+...|..|.+..-.. +..+-.....-..+...+=+.--+.|-+.|..|++...... ...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~--~~~ 100 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLA--LKY 100 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 445556667777766666665443211 11110001112222222223333445555555544333321 122
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---------HHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF--RLCK---------ASLQKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf--R~~k---------~~reKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
....+--...|..-|..|...|+.|-..|-.|.+-+ +..+ .....++.+|+++.--.++. |+...+
T Consensus 101 e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~---LE~EQE 177 (310)
T PF09755_consen 101 EQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENT---LEQEQE 177 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH---HHHHHH
Confidence 223344457888999999999999999988777653 1111 12223334444433333322 222222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012231 173 RLKLVLQRKTKEAFEATKRLKELLES 198 (468)
Q Consensus 173 kQ~~VLKRKtEEaaAa~KRLK~lL~~ 198 (468)
-==+-|..+++.+++-++.|..-|+.
T Consensus 178 ~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 178 ALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 23345788999999999988888775
No 56
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.63 E-value=26 Score=36.21 Aligned_cols=148 Identities=19% Similarity=0.309 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHH
Q 012231 147 QKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEV 226 (468)
Q Consensus 147 eKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv 226 (468)
+-.+..|+|+...+++.|-.|++..++|..-.--..-|.+++.+-.--+++..-.. ...-+||.|||-+
T Consensus 24 E~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~l-----------ek~rqKlshdlq~ 92 (307)
T PF10481_consen 24 EQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENL-----------EKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH-----------HHHHHHhhHHHhh
Confidence 44567789999999999999999999987644444444555544222222221110 0123477777754
Q ss_pred HH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccc-------cccccccCCC------CCccchhhhhHHHHH
Q 012231 227 TV---Q-VQKVSSEYERELEEMAGVINKLKLEAEMMKEENSR-------CLLEDDEFDP------GVKDSEFSDLKEEVA 289 (468)
Q Consensus 227 ~v---~-~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~~~~-------~~l~dke~~c------~~kd~e~~elkE~~~ 289 (468)
-- . ..-.-.+.-.+++.|..++..++.+++........ |.---+.+.. .--|.-+.||+|+.+
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekyn 172 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYN 172 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHH
Confidence 32 1 11223344456777888888888888876644321 2211122221 234678899999988
Q ss_pred HHHHHHHhhcchhHHH
Q 012231 290 RLSNLISQMAVPKAEI 305 (468)
Q Consensus 290 ~l~~~l~~~e~~k~e~ 305 (468)
.=+--=..||+..+-|
T Consensus 173 keveerkrle~e~k~l 188 (307)
T PF10481_consen 173 KEVEERKRLEAEVKAL 188 (307)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 7665545555444443
No 57
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.57 E-value=24 Score=39.86 Aligned_cols=160 Identities=20% Similarity=0.208 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 012231 28 DDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKK-------KLELQFQF 100 (468)
Q Consensus 28 ~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkk-------Kq~e~~rL 100 (468)
.=-.+-...|.+|..++..+..+++.+-..+..+.. . .++......+++.++.-.++ ......+|
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~-------e-~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEE-------E-LEEKEAENEELEEELKLKKKTVELLPDAEENIAKL 399 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 334455677888999999999988888877764321 1 13334444455555443322 23556788
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012231 101 STQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQR 180 (468)
Q Consensus 101 lK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKR 180 (468)
...-+.+..++..|..+-+.-+.--+.-.+.+++........-...-.+|..++.+.+.-..+++.-+..+.+-...|.+
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888887776666666666655443333334444566666666666666666555555554444433
Q ss_pred HhHHH--HHHHHHHHHH
Q 012231 181 KTKEA--FEATKRLKEL 195 (468)
Q Consensus 181 KtEEa--aAa~KRLK~l 195 (468)
-...+ .+..+|+-++
T Consensus 480 ~~k~~~Rs~Yt~RIlEI 496 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEI 496 (594)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 33332 2344444443
No 58
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.53 E-value=44 Score=36.93 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=95.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012231 23 QSPAVDDKEHYEKRVHELEQEN---DTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ-- 97 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~ei---~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~-- 97 (468)
..+++.++.+|..-+.+|..-. ..++.|.+.++..... +-+..+.+....+...+++.+|..+|..|+.-+...
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~-A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~ 193 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNA-ALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKL 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999987644 4444555555533221 111223444555677788888888877777655331
Q ss_pred --------------------HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HH
Q 012231 98 --------------------FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQ---LM 154 (468)
Q Consensus 98 --------------------~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~Q---LK 154 (468)
..+.+.....+..+..|+.+|...+.-.++|..-.-.-..-..+|+...+.++.. .+
T Consensus 194 a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~ 273 (522)
T PF05701_consen 194 AHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAK 273 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 2233344556667777777776666666655544433333333344433333333 34
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012231 155 KENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATK 190 (468)
Q Consensus 155 Ke~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~K 190 (468)
.........+..+...-..-..-|..-.+|+..++.
T Consensus 274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~ 309 (522)
T PF05701_consen 274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRA 309 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555655555555667777777776655
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.23 E-value=33 Score=35.17 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGD 108 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE 108 (468)
+...-+.+|.+++.+...++.|++.|...+..+.++-++...++ .+-...|+.|+.+|.+|+.-..+...+++-+.+.-
T Consensus 32 ~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i-~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 32 KIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEI-DQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999888775543323333333 33345555555555555555555554444333321
Q ss_pred HH-------H------HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHH
Q 012231 109 EA-------A------KRFQDEIQK------LRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSA 169 (468)
Q Consensus 109 ~k-------i------k~L~~EIq~------MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~ 169 (468)
.. | +.|..=|.+ +=..=-.|+...+++-..-..-+..-+.++.+|..-....+..+..|+.
T Consensus 111 q~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~ 190 (265)
T COG3883 111 QVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNS 190 (265)
T ss_pred HHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 111111211 1122234566666666666666666666666666666666666666665
Q ss_pred HHHHH-HHHHHHHhHHHHHHHH
Q 012231 170 LNQRL-KLVLQRKTKEAFEATK 190 (468)
Q Consensus 170 ~~~kQ-~~VLKRKtEEaaAa~K 190 (468)
+...+ ..|+.-+-+++.+...
T Consensus 191 qk~e~~~l~~~~aa~~a~~~~e 212 (265)
T COG3883 191 QKAEKNALIAALAAKEASALGE 212 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 44333 3344444444444433
No 60
>PRK09039 hypothetical protein; Validated
Probab=88.09 E-value=35 Score=35.73 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhH
Q 012231 82 ALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNE 161 (468)
Q Consensus 82 eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q 161 (468)
+++.++..|...+.+ ....-...-.+|..|+.+|..|+.|-..| +-+|.-++..++-.+
T Consensus 113 ~~~~~~~~l~~~L~~---~k~~~se~~~~V~~L~~qI~aLr~Qla~l------------------e~~L~~ae~~~~~~~ 171 (343)
T PRK09039 113 AAEGRAGELAQELDS---EKQVSARALAQVELLNQQIAALRRQLAAL------------------EAALDASEKRDRESQ 171 (343)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 455555555433332 22333445567889999999999984444 334444444454444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHH
Q 012231 162 YELHLLSALNQRLKLVLQRKTKEAFEATKRL----KELLE 197 (468)
Q Consensus 162 ~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRL----K~lL~ 197 (468)
..|..|+ .+=...|-+|..|++.++..+ ++.+.
T Consensus 172 ~~i~~L~---~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~ 208 (343)
T PRK09039 172 AKIADLG---RRLNVALAQRVQELNRYRSEFFGRLREILG 208 (343)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 4454443 334445556777887776655 55544
No 61
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.98 E-value=29 Score=34.23 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHH----------------
Q 012231 24 SPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQV---------------- 87 (468)
Q Consensus 24 ~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql---------------- 87 (468)
.|+..+-......+...|.++..+....+++... .....++-++|++.+..|-.+.
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~--------~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~ 76 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKE--------NQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLK 76 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHh
Confidence 4455555555555555555555555554444332 2334455555555555543332
Q ss_pred ------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 88 ------LELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQ 147 (468)
Q Consensus 88 ------~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~re 147 (468)
.+|..-....+-|.+.-++.-.-|..+..+-..+|..-...+.+++.+..+|..++...+
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222233333444444556666667777777777777788888888887776444
No 62
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.81 E-value=60 Score=37.65 Aligned_cols=142 Identities=16% Similarity=0.197 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccc
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ----FQFSTQKP 105 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~----~rLlK~k~ 105 (468)
-..|-.+|.+|+.+++.+..+.+.+..+. +....+-.++..-...++.+...|+...++. .||+.-=.
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~--------~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAEN--------ERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34577778888887777777777766653 3334444555566666666666666666553 34444444
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKVQL------QCKLKLEAVQFRLCKASLQKEIFQLMKENRRNE-YELHLLSALNQRLKLVL 178 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKVqL------~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q-~ei~kLe~~~~kQ~~VL 178 (468)
.-|+.--.|+.-|..+|...|.. ++++.||.+--... --|+..||.=..++- -.+..|+..- -|...|
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~q----lee~~rLk~iae~qleEALesl~~ER-eqk~~L 175 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQ----LEEAARLKEIAEKQLEEALESLKSER-EQKNAL 175 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44555566777777777777763 45666665543322 235566665444443 3344444444 345557
Q ss_pred HHHhHH
Q 012231 179 QRKTKE 184 (468)
Q Consensus 179 KRKtEE 184 (468)
||-...
T Consensus 176 rkEL~~ 181 (717)
T PF09730_consen 176 RKELDQ 181 (717)
T ss_pred HHHHHH
Confidence 775555
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.78 E-value=71 Score=38.44 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHH
Q 012231 88 LELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQ---CKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYEL 164 (468)
Q Consensus 88 ~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~---KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei 164 (468)
..+......|..|.+....-+.++..|+.+|..|.+++++|. |.+..|.++.-. |+-- +..-+.-
T Consensus 394 ss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~-------e~~t-----~~~s~~r 461 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE-------ETST-----VTRSLSR 461 (1195)
T ss_pred hhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----HHHhHHH
Confidence 344555555666777777788999999999999999999864 334333333221 1111 1111111
Q ss_pred HHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHH----HHHHHHHHHHHHHHHHHH
Q 012231 165 HLLSALNQRLKLVLQ----RKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQ----SIEHELEVTVQVQKVSSE 236 (468)
Q Consensus 165 ~kLe~~~~kQ~~VLK----RKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ik----WLe~ElEv~v~~~Ea~~~ 236 (468)
..+++-+..|-.-+. --|+|+-+-.+.|+..|..+..--.|-....+.--..++ -++..=+..-...+....
T Consensus 462 q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~ 541 (1195)
T KOG4643|consen 462 QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGN 541 (1195)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222222 223444443455555555554211221100000001122 111111222233445566
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcc
Q 012231 237 YERELEEMAGVINKLKL---EAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAV 300 (468)
Q Consensus 237 LE~llE~L~~E~~~Lk~---e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~ 300 (468)
||..-..|..+|..|+. ....+.+.+ .+ +|-.-.+++.=|+.|.++=+|.+.
T Consensus 542 lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~-----n~-------lE~~~~elkk~idaL~alrrhke~ 596 (1195)
T KOG4643|consen 542 LEEENAHLLKQIQSLKTTSQNGALLEQNN-----ND-------LELIHNELKKYIDALNALRRHKEK 596 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhh-----hH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666668888888866 222222222 23 555566777677777766655443
No 64
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.74 E-value=52 Score=38.10 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ-------------- 99 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r-------------- 99 (468)
-..|.-|+.++..++.|+..|+..|......-+.....+ .++..++..|-.+|..|+.-+..+.+
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~al-s~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~ 342 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGAL-SEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHE 342 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccc
Confidence 345556666666666666666666652111111112233 35556777777777777773222111
Q ss_pred --------------HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHH
Q 012231 100 --------------FSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELH 165 (468)
Q Consensus 100 --------------LlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~ 165 (468)
|.-.-......+..|..||..||..-..+..+.+++..+++..-+.....+..+.+..+..+..+.
T Consensus 343 d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~ 422 (717)
T PF09730_consen 343 DGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERIS 422 (717)
T ss_pred ccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 111112234457788888888888888888888888887777778888888888887777777777
Q ss_pred HHHHHHHHHHHH
Q 012231 166 LLSALNQRLKLV 177 (468)
Q Consensus 166 kLe~~~~kQ~~V 177 (468)
.|+.....=..+
T Consensus 423 ~LE~ELr~l~~~ 434 (717)
T PF09730_consen 423 ELEKELRALSKL 434 (717)
T ss_pred HHHHHHHHHHHH
Confidence 777765544333
No 65
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.34 E-value=38 Score=34.87 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKLELQFQF-STQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL-lK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
-+.-+|.+....+..++.+++.--.+.... ..+-.+-+.+.+.|..+.+.|+.....+--+.-..-.+|-+.....+.+
T Consensus 20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Ledd 99 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDD 99 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777666665433 3344555667777888888888776666666655666666666666677
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 012231 150 IFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 150 I~QLKKe~RK~q~ei~kLe~~~ 171 (468)
+.|++.---....-|++|+..|
T Consensus 100 lsqt~aikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 100 LSQTHAIKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 7666654444444444444433
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.86 E-value=26 Score=32.41 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e 96 (468)
.+.+|++.||.+|.....++.+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 67
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.20 E-value=47 Score=34.77 Aligned_cols=142 Identities=23% Similarity=0.276 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEA 110 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~k 110 (468)
....+||..||.+...|..|-..|...-.+. .++-..|-.+.-+.|.+...+|..|...+ ...-+.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dcv~QL~~An~qia~LseEL----------a~k~Ee 228 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDCVKQLSEANQQIASLSEEL----------ARKTEE 228 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHHHHHhhhcchhHHHHHHHH----------HHHHHH
Confidence 3456788888888888888888877664432 23444555556666666666666665443 333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012231 111 AKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATK 190 (468)
Q Consensus 111 ik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~K 190 (468)
....+.||..+-.+-|.|+++.+.=+.-.-.+.+ -+.-.|.-.+.-..+++.|+-.+.-=..+|.--.||+..+++
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q----~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQ----HLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6677888999999999999998876654443333 233345566666777888888887777777777777766654
No 68
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.16 E-value=19 Score=33.67 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
.....+..++..++..+..+.+...+..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666655544433
No 69
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=85.98 E-value=88 Score=37.70 Aligned_cols=195 Identities=15% Similarity=0.092 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQ 115 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~ 115 (468)
.+.+|+..-+.|+.|++.++.+..+..-.. +......++-.+.+..+..-...+-.-...+..+-+.-+.....+.+|.
T Consensus 430 q~~eled~~K~L~~E~ekl~~e~~t~~~s~-~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~ 508 (1195)
T KOG4643|consen 430 QLAELEDLEKKLQFELEKLLEETSTVTRSL-SRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLH 508 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677778888777765542211 1123333344444444333333444444445666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHH-------------HHHHHHHHHHHh
Q 012231 116 DEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSAL-------------NQRLKLVLQRKT 182 (468)
Q Consensus 116 ~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~-------------~~kQ~~VLKRKt 182 (468)
+.+..+|.|=-....+.....++--.+.. .+--|.++.+--..+|+.|..- .+.+...++.=+
T Consensus 509 a~~~elkeQ~kt~~~qye~~~~k~eeLe~----~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~i 584 (1195)
T KOG4643|consen 509 ALKNELKEQYKTCDIQYELLSNKLEELEE----LLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYI 584 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777777766666666666665554443 4455555655555666665552 122223333223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 012231 183 KEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEY 237 (468)
Q Consensus 183 EEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~Ea~~~L 237 (468)
. +..+-+|.++.|+...--+.-... .......|.||-.-+-..+....++..+
T Consensus 585 d-aL~alrrhke~LE~e~mnQql~~d-~~~~kr~ie~Lr~~~~kll~~Kkdr~re 637 (1195)
T KOG4643|consen 585 D-ALNALRRHKEKLEEEIMNQQLFED-PIPLKRDIEWLRRKESKLLKEKKDRNRE 637 (1195)
T ss_pred H-HHHHHHHHHHHHHHHHhhhhhhhc-CCchhhhHHHHHHHHHhhcchhHHHHHH
Confidence 3 333445666666655410111111 0011234679988755555444444433
No 70
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.63 E-value=39 Score=33.35 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012231 119 QKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATK 190 (468)
Q Consensus 119 q~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~K 190 (468)
++..+-|..-..+|-.-++........+.-|+..|+-.-||.+..+..|+.. |..|+.|..-+.+
T Consensus 132 qry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~-------LeQK~kEn~ELtk 196 (207)
T PF05010_consen 132 QRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEES-------LEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3333334444445555555555556677778888888888888888888765 4455556555544
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.59 E-value=95 Score=37.77 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 219 SIEHELEVTVQVQKVSSEYERELEE 243 (468)
Q Consensus 219 WLe~ElEv~v~~~Ea~~~LE~llE~ 243 (468)
-|+.+|..+-..+.....|+.-++.
T Consensus 782 ~L~~~l~~ie~~r~~V~eY~~~~~~ 806 (1201)
T PF12128_consen 782 QLEKELKRIEERRAEVIEYEDWLQE 806 (1201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.13 E-value=75 Score=36.18 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 76 HLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEA 136 (468)
Q Consensus 76 yrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEs 136 (468)
.-.++.+|+..|.+|+....... -..--..-...-..|+.|+..|+.....|..++....
T Consensus 48 ~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv 107 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQV 107 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666654443322 0011111223335677777777776666666555433
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.93 E-value=1.1e+02 Score=37.75 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012231 148 KEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLES 198 (468)
Q Consensus 148 KEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~ 198 (468)
+.+--.+.+....+.....|+..++.-+.+|.+|++...+++.|...+...
T Consensus 1647 ~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~e 1697 (1758)
T KOG0994|consen 1647 KTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTE 1697 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 344444445555555566888999999999999999999999888776553
No 74
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.89 E-value=47 Score=33.58 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 012231 165 HLLSALNQRLKLVLQRKTKEA 185 (468)
Q Consensus 165 ~kLe~~~~kQ~~VLKRKtEEa 185 (468)
.+.++....++++++||..++
T Consensus 125 ~kr~~~~Ka~e~~~kRkQdsa 145 (246)
T KOG4657|consen 125 QKRQALSKAKENAGKRKQDSA 145 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 345555788888888887774
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.71 E-value=1e+02 Score=37.33 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=26.0
Q ss_pred chhhhhHHHHHHHHHHHHhhcchhHHHhhhhhhhhh
Q 012231 279 SEFSDLKEEVARLSNLISQMAVPKAEIIHNKSEVGQ 314 (468)
Q Consensus 279 ~e~~elkE~~~~l~~~l~~~e~~k~e~~~~~k~~~~ 314 (468)
.++.+++++++.+..-|--+-..+.+=.+..+.++.
T Consensus 458 ~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~ea 493 (1141)
T KOG0018|consen 458 EEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEA 493 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 457788888887777777777777776677776665
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.60 E-value=64 Score=34.94 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELR 55 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell 55 (468)
++.+++.++..++.+++.+-
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~ 194 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQ 194 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 77
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.20 E-value=0.31 Score=55.06 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSST---PDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFST 102 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~---~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK 102 (468)
+...+..|..+..+|+.++..|..|++.+..+....... .+.....-......++..|..++..|+.... ++..
T Consensus 184 ~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~---~~e~ 260 (713)
T PF05622_consen 184 LVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELE---RLEE 260 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 344566788888888888888888888887665432211 0100111111223455566666666665443 2333
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 012231 103 QKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKT 182 (468)
Q Consensus 103 ~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKt 182 (468)
........+..|..+|..|+..-..|+.. +..++.++- ||--||.. ...+.+|++.-+ .+|.|.
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q~~~eL~~~----A~~a~~LrD----ElD~lR~~----a~r~~klE~~ve----~YKkKL 324 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQENEELQAE----AREARALRD----ELDELREK----ADRADKLENEVE----KYKKKL 324 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh----hHHHHHHH----HHHHHHHHHHHH----HHHHHH
Confidence 44444555666667776666655444432 222222222 22222222 222344444333 388899
Q ss_pred HHHHHHHHHHHHHHH
Q 012231 183 KEAFEATKRLKELLE 197 (468)
Q Consensus 183 EEaaAa~KRLK~lL~ 197 (468)
+++..++++++.+-+
T Consensus 325 ed~~~lk~qvk~Lee 339 (713)
T PF05622_consen 325 EDLEDLKRQVKELEE 339 (713)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887744
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.01 E-value=18 Score=35.60 Aligned_cols=98 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEA 110 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~k 110 (468)
...+.++..++..+..|+.+...+-..|.+...+......+. +.|+.+|..|..+|.+.-.....-.+-...- +..
T Consensus 130 e~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re-~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L---e~~ 205 (237)
T PF00261_consen 130 ERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE-DEYEEKIRDLEEKLKEAENRAEFAERRVKKL---EKE 205 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 111 AKRFQDEIQKLRVQKVQLQCKL 132 (468)
Q Consensus 111 ik~L~~EIq~MK~qKVqL~KKM 132 (468)
|..|..+|...|.....+..-|
T Consensus 206 id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 206 IDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 79
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.42 E-value=54 Score=36.08 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 23 QSPAVDDKEHYEKRVHELEQ-ENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~-ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
.+..+.-+.-||..+.+++. ++......-..++.+..+.+. ........+.--+++++.++..+.++.+.+.+
T Consensus 327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~-~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQ-ESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888 666666666666655544221 12223333344455666666655555544433
No 80
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.34 E-value=1.1e+02 Score=36.66 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHH
Q 012231 76 HLEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLK---LEAVQFRLCKASLQKEIF 151 (468)
Q Consensus 76 yrkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMK---EEsekfR~~k~~reKEI~ 151 (468)
.+-.|.+|..+|..|+-+..| +.+|.. -.+.--++..|+.=-..|=.+.+.|+|.++ .|.+....|+.....|++
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~E-lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ema 307 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKE-LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMA 307 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444433 222221 112222222332222334445555655553 345555566666655554
Q ss_pred H
Q 012231 152 Q 152 (468)
Q Consensus 152 Q 152 (468)
-
T Consensus 308 d 308 (1243)
T KOG0971|consen 308 D 308 (1243)
T ss_pred H
Confidence 3
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.00 E-value=19 Score=40.74 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQL 153 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QL 153 (468)
..++.++..|+.++..|+.... .|+.+|..|+..--.+.+.++.+.-+-|+..+ ++++|..|
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~e-----------------e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~-~~~~I~~L 486 (652)
T COG2433 425 KKLEETVERLEEENSELKRELE-----------------ELKREIEKLESELERFRREVRDKVRKDREIRA-RDRRIERL 486 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 3445555555555555554333 33455555555555566677755555555543 67788888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 012231 154 MKENRRNEYELHLLSALNQRLKL 176 (468)
Q Consensus 154 KKe~RK~q~ei~kLe~~~~kQ~~ 176 (468)
.++-......+..|++...+-..
T Consensus 487 ~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 487 EKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877776664
No 82
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.56 E-value=1.1e+02 Score=36.26 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 012231 40 LEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQ 119 (468)
Q Consensus 40 LE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq 119 (468)
.+..|..+-.|...+-..+.+. ...+...-.+|+..|.+|+.++++-+...+ ++-....+|+.|..
T Consensus 331 ~~~~~~~~~~e~~~~~~~l~~~----~~ear~~~~q~~~ql~~le~~~~e~q~~~q----------e~~~e~eqLr~ela 396 (980)
T KOG0980|consen 331 RELQIEQLSREVAQLKAQLENL----KEEARRRIEQYENQLLALEGELQEQQREAQ----------ENREEQEQLRNELA 396 (980)
T ss_pred hhHHHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHH
Confidence 3344444444444444444432 234445557788888887777665443222 11222228999999
Q ss_pred HHHHHHHHHHHHH--HHHHHHH
Q 012231 120 KLRVQKVQLQCKL--KLEAVQF 139 (468)
Q Consensus 120 ~MK~qKVqL~KKM--KEEsekf 139 (468)
.+-+.+.++.+-. .+|.++.
T Consensus 397 ql~a~r~q~eka~~~~ee~e~~ 418 (980)
T KOG0980|consen 397 QLLASRTQLEKAQVLVEEAENK 418 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999988877 5555543
No 83
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.39 E-value=51 Score=35.41 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL-QFQFSTQ 103 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e-~~rLlK~ 103 (468)
.+..++..++.++..++..++.+...+..............-..++.+|.+++.++..|.....+ |-.+..+
T Consensus 208 ~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l 280 (498)
T TIGR03007 208 EAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIAT 280 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 34444555555555555555555554442111000000011235667788899999888876654 5444444
No 84
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.24 E-value=1.1e+02 Score=35.64 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhcccc
Q 012231 39 ELEQENDTLKREIEELRFKVASVSST-PDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ-----------FSTQKPK 106 (468)
Q Consensus 39 eLE~ei~~lq~ERDell~~L~~~ss~-~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r-----------LlK~k~k 106 (468)
.|..|+..|..|||.+.++|.- ++. -...+...+++++..+..|......|.....+... ..+-...
T Consensus 475 dL~~ELqqLReERdRl~aeLql-Sa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQL-SARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4577888888999998888752 110 00111223333333333333333333333322211 1122334
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 107 GDEAAKRFQDEIQKLRVQKV-QLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 107 sE~kik~L~~EIq~MK~qKV-qL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
+....-.|+.|+......-. -|+.++-+--.++++-=..-++.++..+++--|.-.-++.++.+..
T Consensus 554 s~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~ 620 (739)
T PF07111_consen 554 STEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAA 620 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788899988886666 5788888888888888888888888888877777666666655543
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.94 E-value=56 Score=33.76 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
|+=++..++.=+..|+..++.+......+.. .-.....+......+...|+.++..|+....+
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~-~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDK-QLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444444444433322210 12334455666677788888888888887765
No 86
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=81.83 E-value=1.1e+02 Score=35.53 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDE 109 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~ 109 (468)
..|+.++..|..+|.+--+=+++|...=....-+.....+++ ..|..+++.|+.++..++++-.+ |..+++--+..--
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~-~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~ 668 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQS-NVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSI 668 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012231 110 AAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEAT 189 (468)
Q Consensus 110 kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~ 189 (468)
....|-.||..+|..=+.-++ +++|.+-.=+.+ |+-+=.-+-|..++..++=.....--.+.+.|-.|+.|+.
T Consensus 669 ~e~~L~~EveK~k~~a~EAvK-~q~EtdlrCQhK------IAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k 741 (786)
T PF05483_consen 669 SEEELLGEVEKAKLTADEAVK-LQEETDLRCQHK------IAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHK 741 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 012231 190 KRLKELLESRK 200 (468)
Q Consensus 190 KRLK~lL~~rk 200 (468)
.-|---|..-+
T Consensus 742 ~sLE~ELs~lk 752 (786)
T PF05483_consen 742 ASLELELSNLK 752 (786)
T ss_pred HHHHHHHHHHH
No 87
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.81 E-value=55 Score=32.11 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHh
Q 012231 139 FRLCKASLQKEIFQLMKENRR----NEYELHLLSALNQRLKLVLQRKT 182 (468)
Q Consensus 139 fR~~k~~reKEI~QLKKe~RK----~q~ei~kLe~~~~kQ~~VLKRKt 182 (468)
|+.++...++||..|+++..+ ....++.++.++-+....|.+-.
T Consensus 76 ~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 76 FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666655555 23333344444444444444433
No 88
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.77 E-value=78 Score=34.76 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHh-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQ-------FQFST-------QKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~-------~rLlK-------~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
...-+|+..|+.+-.-|++|+.+- ..+.+ .-...-.-|..|++||.+++.+=..-++.-.++..++
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888877788777321 11111 1122234577788888888887777777777777777
Q ss_pred HHHHHHhhHHHHHHH
Q 012231 140 RLCKASLQKEIFQLM 154 (468)
Q Consensus 140 R~~k~~reKEI~QLK 154 (468)
+..+....-|..+|.
T Consensus 284 ~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 284 RAEEVDHREENERLQ 298 (552)
T ss_pred HHHHhhHHHHHHHHH
Confidence 777766666655553
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.32 E-value=64 Score=33.59 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 28 DDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 28 ~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
+...=|+=++..|+.=+..|...++.+......+. ........+....+.+...|+.++..|++-..+.
T Consensus 130 ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~-~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 130 AKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLM-KELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444555555555555555544444443322211 1123445666677778888888888888777663
No 90
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.84 E-value=95 Score=34.21 Aligned_cols=176 Identities=20% Similarity=0.171 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccCCCChHHHHHHHHHHHHH----HHHHH
Q 012231 23 QSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVA--------------SVSSTPDVAAQKLKEAHLEK----MNALE 84 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~--------------~~ss~~~~~~~KLkeeyrkK----L~eLE 84 (468)
+.++..+...|-+++..++.....|..... ++..+. -...........+ .+|..| |+.-+
T Consensus 175 ~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el-~~Yk~kA~~iLq~kE 252 (511)
T PF09787_consen 175 DGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAEL-QQYKQKAQRILQSKE 252 (511)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhcCHH
Confidence 345566667777777777754444443222 111111 0000011222333 466533 44556
Q ss_pred HHHHHHHHHHHH-----------HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 012231 85 GQVLELKKKLEL-----------QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQL 153 (468)
Q Consensus 85 ~ql~eLkkKq~e-----------~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QL 153 (468)
+-|..|+..... +..|.-......+.+..|+..|..++.+=.++--++..+.+.|+..-....--+..+
T Consensus 253 klI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~ 332 (511)
T PF09787_consen 253 KLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPE 332 (511)
T ss_pred HHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666662211 222322222233333333333333333333334455555555544433332222222
Q ss_pred ---HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012231 154 ---MKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRK 200 (468)
Q Consensus 154 ---KKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk 200 (468)
.-+.+....++..++....++..-+..|+.+-..=..+|+..+..+.
T Consensus 333 ~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 333 LTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777776666666666665544
No 91
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=63 Score=36.81 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 105 PKGDEAAKRFQDEIQKLRVQKVQLQCK 131 (468)
Q Consensus 105 ~ksE~kik~L~~EIq~MK~qKVqL~KK 131 (468)
++.+..+..|..+|..||+.--.|-.+
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888888554444433
No 92
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=80.42 E-value=95 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 012231 26 AVDDKEHYEKRVHELE----QENDTLKREIEELRFKV 58 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE----~ei~~lq~ERDell~~L 58 (468)
...|-..+.++|.+|+ -++..|+.|+|.||++=
T Consensus 343 fAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEE 379 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEE 379 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567778888888875 46778889999998763
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.38 E-value=49 Score=30.60 Aligned_cols=117 Identities=26% Similarity=0.316 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEA 110 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~k 110 (468)
..++.++..|+.+...++.|+..|...+. ..+..|..++.+|.+++.+..+-.........-..+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~---------------~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr 81 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQ---------------QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR 81 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Confidence 34555555555555555555555444332 233444555555555555555555554444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhHHHHHHHHH
Q 012231 111 AKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKAS---LQKEIFQLMKENRRNEYELHLLSA 169 (468)
Q Consensus 111 ik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~---reKEI~QLKKe~RK~q~ei~kLe~ 169 (468)
|..|..++...- .++++-.++++..... .+|-|..|..+.-.-+..+-.|..
T Consensus 82 iq~LEeele~ae-------~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 82 IQLLEEELEEAE-------KKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555544 4566666665544431 234455554444443433433333
No 94
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.06 E-value=19 Score=37.25 Aligned_cols=63 Identities=27% Similarity=0.444 Sum_probs=36.4
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccccccccccCCCCCccchhh----hhHHHHHHH
Q 012231 219 SIEHE---LEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFS----DLKEEVARL 291 (468)
Q Consensus 219 WLe~E---lEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~----elkE~~~~l 291 (468)
|||.| +|..+...|||.+ |.+|++=.+-++ ..|-| ||..|+ |.+.+=..|
T Consensus 105 WIEEECHRVEAQLALKEARkE-----------IkQLkQvieTmr-----ssL~e-------kDkGiQKYFvDINiQN~KL 161 (305)
T PF15290_consen 105 WIEEECHRVEAQLALKEARKE-----------IKQLKQVIETMR-----SSLAE-------KDKGIQKYFVDINIQNKKL 161 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-----hhhch-------hhhhHHHHHhhhhhhHhHH
Confidence 99976 5666666666654 444444333222 12344 343332 455555669
Q ss_pred HHHHHhhcchhHH
Q 012231 292 SNLISQMAVPKAE 304 (468)
Q Consensus 292 ~~~l~~~e~~k~e 304 (468)
-+||+.||+--.-
T Consensus 162 EsLLqsMElAq~g 174 (305)
T PF15290_consen 162 ESLLQSMELAQSG 174 (305)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876544
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.98 E-value=72 Score=32.29 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHH
Q 012231 96 LQFQFSTQKPKGDEAAKRFQDEIQKLRVQ-------KVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLS 168 (468)
Q Consensus 96 e~~rLlK~k~ksE~kik~L~~EIq~MK~q-------KVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe 168 (468)
+...|.........++..|+.+|..+-.- ..-|..+|...-..|...+..-+-+|.-++++ -
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~-----------~ 158 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE-----------G 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 33444444444444444444444444444 44444444444444444444444444433333 3
Q ss_pred HHHHHHHHHHHHHhHH
Q 012231 169 ALNQRLKLVLQRKTKE 184 (468)
Q Consensus 169 ~~~~kQ~~VLKRKtEE 184 (468)
..+..+...|..++..
T Consensus 159 ~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 159 QELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHhcCH
Confidence 3444555556666654
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.63 E-value=80 Score=32.65 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKVQ 127 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKVq 127 (468)
.-......|..+|..+++....
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555555544433
No 97
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.33 E-value=79 Score=32.38 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 012231 23 QSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAH---LEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeey---rkKL~eLE~ql~eLkkKq~e 96 (468)
..+++.+....+.++..|+.++..|...+.....+|+-.+.+.| .+| .-++..|..+|..|+.-+++
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-------~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-------HEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999999988876655422 234 23567788888888777654
No 98
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.89 E-value=1.9e+02 Score=36.47 Aligned_cols=147 Identities=10% Similarity=0.072 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKP 105 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ 105 (468)
.+.|+.....-=..| ..|+..+..+|-.-+-+.-..+....---+-.++++.-+.+. ...+. ......+.-.
T Consensus 232 i~~m~~~l~~~r~t~-~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~---rk~eA~kkLe 303 (1486)
T PRK04863 232 FQDMEAALRENRMTL-EAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRR---ELYTSRRQLA 303 (1486)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHH---HHHHHHHHHH
Confidence 445555443333333 346666666665544443211111111123334444444444 33332 3333344445
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEA 185 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEa 185 (468)
..+..+.++...+..+..+...|-+ +.+..+.|..... ++..+..+.......+..|+...+.....|....+++
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEk----QaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeel 378 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQ----DYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQ 378 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777655533 3333333333222 2333344444455555555555555555553333333
No 99
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.00 E-value=0.7 Score=52.35 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
+..+|..|+.++..++.+.....-.+.
T Consensus 66 ~k~~l~~Le~e~~~~~~e~~~~~~~le 92 (722)
T PF05557_consen 66 LKAQLNQLEYELEQLKQEHERAQLELE 92 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655555444433
No 100
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.91 E-value=1.3e+02 Score=34.10 Aligned_cols=165 Identities=19% Similarity=0.206 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAH---LEKMNALEGQVLELKKKLEL----QFQFS 101 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeey---rkKL~eLE~ql~eLkkKq~e----~~rLl 101 (468)
++..+++-...+-.+|..+++.-++|...+..... .+....-+++.| +.-++-++.=+..++.+... .++|.
T Consensus 222 lk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek-~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~ 300 (581)
T KOG0995|consen 222 LKHRLEKYFTSIANEIEDLKKTNRELEEMINEREK-DPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLK 300 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455555555667888888888888877764321 122222232222 22333333333344444333 34455
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 012231 102 TQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRK 181 (468)
Q Consensus 102 K~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRK 181 (468)
...+.-+..+..|+.++..||.+ |.++.===++-++.........++|..+..+.-+-..++-.++.+.+..---|..+
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~ 379 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQ-IELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKK 379 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55566666777777777777653 44443334666777777778889999999999888999999888888887778888
Q ss_pred hHHHHHHHHHHHHH
Q 012231 182 TKEAFEATKRLKEL 195 (468)
Q Consensus 182 tEEaaAa~KRLK~l 195 (468)
.-+...+.+||+-.
T Consensus 380 ~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 380 FIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887754
No 101
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.10 E-value=1.6e+02 Score=34.83 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKL 132 (468)
Q Consensus 78 kKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKM 132 (468)
..+..|+.|+.....++.+.......-.-.++.+..+..|++.+......|.+++
T Consensus 706 ~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 706 DQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666667667666666778889999999999999999998888
No 102
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.84 E-value=8.5 Score=42.26 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 012231 68 AAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQ 124 (468)
Q Consensus 68 ~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~q 124 (468)
+.++| .+.+.++.+||++|..|+ .+...|.+.....+.+|+.|+.||..|+.|
T Consensus 67 nqSAL-teqQ~kasELEKqLaaLr---qElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 67 RQHAT-TEMQVTAAQMQKQYEEIR---RELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455 566677788888877774 233333344455567777777777666654
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.56 E-value=87 Score=31.38 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
.|.+|-.+...+++=..+|+.+++.. ++.. +-|.++..++..|......|..-
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~-----e~ee-------~~L~e~~kE~~~L~~Er~~h~ee 54 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESL-----ENEE-------KCLEEYRKEMEELLQERMAHVEE 54 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888887653 1112 34444555555555444444433
No 104
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.50 E-value=1.9e+02 Score=35.16 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 36 RVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
+...|..++.....+++-+...+.+.
T Consensus 709 kf~~l~~ql~l~~~~l~l~~~r~~~~ 734 (1174)
T KOG0933|consen 709 KFRDLKQQLELKLHELALLEKRLEQN 734 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444455554444444
No 105
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=76.29 E-value=0.83 Score=53.06 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 22 SQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFK-------VASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 22 ~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~-------L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
-+..+..|+..|..-|.+|..+|..+++.+..+-.. +..+.+ .-+...+-+...+++...++.+|.+|+.+.
T Consensus 118 ~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~-~l~~~~k~k~~~Ek~~K~lE~qL~El~~kl 196 (859)
T PF01576_consen 118 HEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQA-QLDSLQKAKQEAEKKRKQLEAQLNELQAKL 196 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 345677889999999999999888887766555422 222111 123334555677888899999999999998
Q ss_pred HHHHHHHh
Q 012231 95 ELQFQFST 102 (468)
Q Consensus 95 ~e~~rLlK 102 (468)
.+..+...
T Consensus 197 ee~er~~~ 204 (859)
T PF01576_consen 197 EESERQRN 204 (859)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 87765544
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.08 E-value=1e+02 Score=35.23 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 012231 182 TKEAFEATKRLKELLESRKAL 202 (468)
Q Consensus 182 tEEaaAa~KRLK~lL~~rk~~ 202 (468)
.-|+.+++.-...+|.+..++
T Consensus 382 ~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 382 QRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666655543
No 107
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=76.05 E-value=41 Score=30.92 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
+.|...|...+..++.+...|+-+..+++.+....+ .....-++..|.+..+.+..+...|...+.+...|
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~---~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQN---AQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457889999999999999999999999999976433 26777888888888888888888887766654443
No 108
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.01 E-value=1.7e+02 Score=34.46 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012231 131 KLKLEAVQFRLCKASLQKEIFQLMKE 156 (468)
Q Consensus 131 KMKEEsekfR~~k~~reKEI~QLKKe 156 (468)
..|+|..+|+..-..++.++...|+.
T Consensus 466 ~q~~Enk~~~~~~~ekd~~l~~~kq~ 491 (861)
T PF15254_consen 466 NQKEENKRLRKMFQEKDQELLENKQQ 491 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44677777777777666666655543
No 109
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=75.93 E-value=23 Score=38.11 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 28 DDKEHYEKRVHELEQENDTLKREIEELRFKVASV-SSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFST 102 (468)
Q Consensus 28 ~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~-ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK 102 (468)
....+|..||-.+.++|+..+..||+-+.+.=.+ +..+..+..+|+.-|++|-+---..|..|++|+....+-++
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ 79 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLK 79 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987664322 23456678999999999999999999999999988544443
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.68 E-value=55 Score=32.19 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 35 KRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKK 93 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkK 93 (468)
.+|-.|+.++..++.+.+++-.... ....+...++...+.++.+|+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN-----------QRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544433321 22234445555555555554433
No 111
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.56 E-value=92 Score=31.19 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 012231 81 NALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRN 160 (468)
Q Consensus 81 ~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~ 160 (468)
.++..++.+|.+...+...-...-...+..|..+..|+..|- ..+..+..||.+....--..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~------------------~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELL------------------QERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333333344455555555555544 34444455555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012231 161 EYELHLLSALNQRLKLVLQRKTKEAFEA 188 (468)
Q Consensus 161 q~ei~kLe~~~~kQ~~VLKRKtEEaaAa 188 (468)
+..|+.++....+-.....|.++|..-+
T Consensus 66 E~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 66 ENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666677777775444
No 112
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.33 E-value=2.1e+02 Score=35.21 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=9.0
Q ss_pred HHhhhhhhcCCccc
Q 012231 409 MLLQNSLIEKPLET 422 (468)
Q Consensus 409 ~llq~a~~~~~~~~ 422 (468)
.+|+++||-+-.+.
T Consensus 713 faLrdtLV~d~LeQ 726 (1293)
T KOG0996|consen 713 FALRDTLVADNLEQ 726 (1293)
T ss_pred HHHhhhhhhcCHHH
Confidence 46777887665443
No 113
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=74.77 E-value=51 Score=27.90 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHH
Q 012231 44 NDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF-QFSTQKPKGDEAAKRFQDEIQK 120 (468)
Q Consensus 44 i~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~-rLlK~k~ksE~kik~L~~EIq~ 120 (468)
+..+..|-|.+...+.+ .+--.++|+.+++.--.++..++.+.-+.. .-.+++.+.|+.|.+|+.++..
T Consensus 6 Ld~ir~Ef~~~~~e~~~--------~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANS--------YKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666677777666542 223567888888777777777777776643 3445677777777777777653
No 114
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.59 E-value=95 Score=30.90 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 69 AQKLKEAHLEKMNALEGQVLELKKKLE--LQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKA 144 (468)
Q Consensus 69 ~~KLkeeyrkKL~eLE~ql~eLkkKq~--e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~ 144 (468)
..+.+..|..+..+++.....++.+.. .+..+.++..+.+.....+..-|......+.+-+..|-.-.++|...+.
T Consensus 123 ~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee 200 (233)
T cd07649 123 VEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEV 200 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888887776655432 2345666677777777777777888888888888888887777777765
No 115
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=74.26 E-value=70 Score=31.38 Aligned_cols=19 Identities=21% Similarity=0.185 Sum_probs=8.3
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 012231 24 SPAVDDKEHYEKRVHELEQ 42 (468)
Q Consensus 24 ~d~q~mk~qYEkKL~eLE~ 42 (468)
+|....+.-...--..|+.
T Consensus 97 ~d~~~w~~al~na~a~leh 115 (221)
T PF05700_consen 97 NDVEAWKEALDNAYAQLEH 115 (221)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3455544444444344443
No 116
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.09 E-value=65 Score=32.54 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 70 QKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLK 133 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMK 133 (468)
..-++.|++|..+||.++..++ ..+..|+.||..|++-=++|.-|+|
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~-----------------~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQ-----------------QTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999987765 5677899999999999999998886
No 117
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.68 E-value=1e+02 Score=30.87 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq 94 (468)
.+|+.+|..++.+....+..+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L 28 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEAL 28 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445544444444443333
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.19 E-value=1.5e+02 Score=32.48 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 012231 105 PKGDEAAKRFQDEIQKLRVQKVQLQ 129 (468)
Q Consensus 105 ~ksE~kik~L~~EIq~MK~qKVqL~ 129 (468)
..--+++..|......|+.++..+.
T Consensus 157 ~~~~~~i~~l~~~~~~l~~~~~~ia 181 (420)
T COG4942 157 PARAERIDALKATLKQLAAVRAEIA 181 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666655555443
No 119
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=72.95 E-value=1e+02 Score=30.44 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=62.6
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 10 QTSAVDSSSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLE 89 (468)
Q Consensus 10 ~~~~~~~~~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~e 89 (468)
.++..|.|. -.+.|.+..+ ..+.|.+|+.++..++.+-..- ....+....-++.+|++=|.=.+.++.+
T Consensus 82 ~~~gTdfS~--~~~~dwEevr--LkrELa~Le~~l~~~~~~~~~~-------~~~~~~~~~lvk~e~EqLL~YK~~ql~~ 150 (195)
T PF12761_consen 82 KEKGTDFSA--TEGTDWEEVR--LKRELAELEEKLSKVEQAAESR-------RSDTDSKPALVKREFEQLLDYKERQLRE 150 (195)
T ss_pred CCCCCCCCC--CCCCchHHHH--HHHHHHHHHHHHHHHHHHHHhc-------ccCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 3455555433 4566777877777777665543 2233455667788998888877777776
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 012231 90 LKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQ 129 (468)
Q Consensus 90 LkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~ 129 (468)
|.. -......-++.+..+|..+..|=--|.
T Consensus 151 ~~~----------~~~~~~~~l~~v~~Dl~~ie~QV~~Le 180 (195)
T PF12761_consen 151 LEE----------GRSKSGKNLKSVREDLDTIEEQVDGLE 180 (195)
T ss_pred hhc----------cCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 653 345566678888888888876644443
No 120
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=72.27 E-value=1.2e+02 Score=34.86 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSS--------------TPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss--------------~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
..|.++|.-|+...+.|+-...-|-.+.+.... +-...-.-|+++|-.+ ..||.|-.+|-....+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsr-tsLETqKlDLmaevSe 185 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSR-TSLETQKLDLMAEVSE 185 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhh-hhHHHHHhHHHHHHHH
Confidence 358888888887777666555444433321110 0001112333444333 4444444444333332
Q ss_pred ----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 97 ----QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKA-SLQKEIFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 97 ----~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~-~reKEI~QLKKe~RK~q~ei~kLe~~~ 171 (468)
..-|.+.+...|.+.+.-+++|+.+.+-||-.+-+-+-. | .|+. .---|+++|+..-.-...++.+|...-
T Consensus 186 LKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlq---y-e~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 186 LKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQ---Y-ETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred hHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---H-HhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 234555666677777777777877777776654332221 1 1111 123367777766666666655555443
No 121
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.22 E-value=1.4e+02 Score=31.59 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq 94 (468)
..++.+|.+++.++.+|....
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y 277 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRL 277 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666665544
No 122
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=70.57 E-value=1.6e+02 Score=32.10 Aligned_cols=221 Identities=20% Similarity=0.228 Sum_probs=57.0
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCC----------------------ChHHH
Q 012231 13 AVDSSSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKV-ASVSST----------------------PDVAA 69 (468)
Q Consensus 13 ~~~~~~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L-~~~ss~----------------------~~~~~ 69 (468)
+-|-|-+++...+....+.|...-+..|...+..+..+.+.....+ ..++.. .....
T Consensus 63 ikd~s~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 142 (424)
T PF03915_consen 63 IKDGSVLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSP 142 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCeeEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCc
Confidence 4455666777777777888999999999999999999888876555 111100 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 70 QKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
..........++.|..+|+.|++-..+...- ....|..+...|..+|..-.... ...-.+--++.
T Consensus 143 ~~~~~~~~~Ev~~LRreLavLRQl~~~~~~~------~~~~i~~i~~ki~~~k~~s~~~~---------~~~~R~~~~~~ 207 (424)
T PF03915_consen 143 QSTSKSDLKEVQSLRRELAVLRQLYSEFQSE------VKESISSIREKIKKVKSASTNAS---------GDSNRAYMESG 207 (424)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhcccc---------ccchhHHHHHH
Confidence 1222224667778888888887766554332 23344455555554444222211 00111111222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhH
Q 012231 150 IFQLMKENRRNEYELHLLSALNQR-LKLVLQRKT-----------KEAFEATKRLKELLESRKALTHRTAGSKTGNHSQF 217 (468)
Q Consensus 150 I~QLKKe~RK~q~ei~kLe~~~~k-Q~~VLKRKt-----------EEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~i 217 (468)
-..|..+...--..+.-|+-.-+. ..-|++|+. .++..+.+.|+.+-+.=. + --+.|
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~----~-------~kp~W 276 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIK----T-------EKPIW 276 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------hCHHH
Confidence 223333444444444444433321 222333332 344444444443322111 1 12578
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 012231 218 Q-SIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMK 259 (468)
Q Consensus 218 k-WLe~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~ 259 (468)
+ +.+.||+.++.-.+.-.+-|.++.+|...+..+.+-+..+.
T Consensus 277 kKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lve 319 (424)
T PF03915_consen 277 KKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVE 319 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 88999999998888888889999998888888877665554
No 123
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=70.38 E-value=87 Score=28.62 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhccCCCC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEE---LRFKVASVSSTP-----------DVAAQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDe---ll~~L~~~ss~~-----------~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
+...+..+-.++..++.+..+ ++.+|+.+.... .....++..+...++..|+.+|..|.+..
T Consensus 18 Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe---- 93 (119)
T COG1382 18 LQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQE---- 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 444455555555556554444 445554432210 01224455666677777777766665443
Q ss_pred HHHhcccchHHHHHHHHHHHHHH
Q 012231 99 QFSTQKPKGDEAAKRFQDEIQKL 121 (468)
Q Consensus 99 rLlK~k~ksE~kik~L~~EIq~M 121 (468)
..-++++..|+.+|+.|
T Consensus 94 ------~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 94 ------EKLQERLEELQSEIQKA 110 (119)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 34456777777777765
No 124
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.35 E-value=1.3e+02 Score=31.37 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 012231 107 GDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAF 186 (468)
Q Consensus 107 sE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaa 186 (468)
....+..+..+++.|+.....|...+++= ........+|+..|..+......+....-..+......|-.-.+|..
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~L----E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEEL----EKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777776666665555432 22223333445555555444444444444444444444555556666
Q ss_pred HHHHHHHHHHH
Q 012231 187 EATKRLKELLE 197 (468)
Q Consensus 187 Aa~KRLK~lL~ 197 (468)
.+..++.-+..
T Consensus 117 sl~~q~~~~~~ 127 (314)
T PF04111_consen 117 SLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555544333
No 125
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=69.75 E-value=1.8 Score=46.46 Aligned_cols=35 Identities=40% Similarity=1.042 Sum_probs=32.5
Q ss_pred cccccCCCCccccCccccccCCCCCCCCcccCCcccCC
Q 012231 352 VCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTN 389 (468)
Q Consensus 352 ~cc~csk~s~ckt~~c~c~~~~~~c~~~c~c~~~kc~n 389 (468)
-+|-|.| |.|.-++|+|--+|..|+..|.|. .|-|
T Consensus 218 kGC~Ckk-SgClKkYCECyQa~vlCS~nCkC~--~CkN 252 (406)
T KOG1171|consen 218 KGCNCKK-SGCLKKYCECYQAGVLCSSNCKCQ--GCKN 252 (406)
T ss_pred CCCCCcc-ccchHHHHHHHhcCCCccccccCc--CCcc
Confidence 6788865 789999999999999999999999 9999
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.97 E-value=89 Score=28.16 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIE 52 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERD 52 (468)
++..|+.++..+....+
T Consensus 4 e~~~l~~e~~~~~~~~~ 20 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEE 20 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 127
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.30 E-value=2e+02 Score=31.93 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012231 28 DDKEHYEKRVHELEQENDTLKREIEELRFKVASVS-S--TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQK 104 (468)
Q Consensus 28 ~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~s-s--~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k 104 (468)
.+-.....++.+|..+|..+....+.+........ . .-..........|...|.+.+.+|..|+........|...-
T Consensus 165 ~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL 244 (522)
T PF05701_consen 165 SAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKL 244 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888777777533211100 0 00111234446788888888888888888885555555555
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 012231 105 PKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKE 184 (468)
Q Consensus 105 ~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEE 184 (468)
...-..+..|+.|+...+..++.-.-..+.....+...=..-..|+.+.+..-.+-..++..|.....--..=|.+=..+
T Consensus 245 ~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 245 AEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777788777777665544422223333333344455567777777777777777777776665444444444444
Q ss_pred HHHHHH
Q 012231 185 AFEATK 190 (468)
Q Consensus 185 aaAa~K 190 (468)
+..++.
T Consensus 325 l~~lke 330 (522)
T PF05701_consen 325 LERLKE 330 (522)
T ss_pred HHHHHH
Confidence 444444
No 128
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.97 E-value=1.8e+02 Score=34.17 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 226 VTVQVQKVSSEYERELEEMA 245 (468)
Q Consensus 226 v~v~~~Ea~~~LE~llE~L~ 245 (468)
.++-+.+.+..|.+||.-|+
T Consensus 741 KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 741 KLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34457778888877776643
No 129
>PRK01156 chromosome segregation protein; Provisional
Probab=67.85 E-value=2.4e+02 Score=32.80 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 012231 81 NALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRV 123 (468)
Q Consensus 81 ~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~ 123 (468)
..+..++..|.........+.......+.+++.|+.+|..++.
T Consensus 228 ~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el~~ 270 (895)
T PRK01156 228 NNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELE 270 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333333322233333334445555555544433
No 130
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.77 E-value=65 Score=36.18 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 35 KRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
..+.+++..++..+..-......|.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344455555555555555554443
No 131
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=67.70 E-value=20 Score=42.57 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFS 101 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLl 101 (468)
++..+..|+.++..+++|++.+...|+|..=-..+. ..+.+.-+.||.+++.++..|...+.....|.
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp-~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~ 994 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVP-EDVRKLNDEKIDELNEEIKQLEQAIEELKSLL 994 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788899999999999999999999998743111112 23446677888999999999888877766554
No 132
>PRK12704 phosphodiesterase; Provisional
Probab=67.65 E-value=2.1e+02 Score=31.93 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 012231 232 KVSSEYERELEE 243 (468)
Q Consensus 232 Ea~~~LE~llE~ 243 (468)
-|+..|+.++.|
T Consensus 265 ~a~~~l~~l~~d 276 (520)
T PRK12704 265 IARLALEKLVQD 276 (520)
T ss_pred HHHHHHHHHHhc
Confidence 466777777776
No 133
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=67.46 E-value=54 Score=28.14 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 30 KEHYE-KRVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 30 k~qYE-kKL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
++++. +++..|-.++..+..|||+|..-|...
T Consensus 13 ~~e~~~k~lE~L~~eL~~it~ERnELr~~L~~~ 45 (84)
T PF04822_consen 13 KKEKKMKELERLKFELQKITKERNELRDILALY 45 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666 788899999999999999999888754
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.24 E-value=2.5e+02 Score=32.68 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012231 169 ALNQRLKLVLQRKTKEAFEATKRLKEL 195 (468)
Q Consensus 169 ~~~~kQ~~VLKRKtEEaaAa~KRLK~l 195 (468)
.+.+.=..+|+.-++++..+.+.++.+
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567888888888887777655
No 135
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.95 E-value=2e+02 Score=31.49 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAH---LEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKR 113 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeey---rkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~ 113 (468)
|..-+.++...+.||+.+..+|.. ..++. +..+.++. ..+-+.++++.++.++-..
T Consensus 90 l~~a~~~k~~~e~er~~~~~El~~-----------~r~e~~~v~~~~~~a~---~n~~kAqQ~lar~t~Q~q~------- 148 (499)
T COG4372 90 LGTAQGEKRAAETEREAARSELQK-----------ARQEREAVRQELAAAR---QNLAKAQQELARLTKQAQD------- 148 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------
Confidence 333455666666777766666653 22222 22333333 3344556666666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012231 114 FQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRL 192 (468)
Q Consensus 114 L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRL 192 (468)
|+.++..+-.|+-+|.-+...=.....++... +.|||-+.+.-..+ ..+-++++.+|.+.-+-+.+..++|
T Consensus 149 lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s----~~Qlk~~~~~L~~r----~~~ieQ~~~~la~r~~a~q~r~~el 219 (499)
T COG4372 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS----ATQLKSQVLDLKLR----SAQIEQEAQNLATRANAAQARTEEL 219 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333211111122211 34555444332222 2224556666666666555555544
No 136
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.32 E-value=47 Score=38.67 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
.++.-|..|+.+...++.+++++...+ ....+++.+|+.+...|+.+-..+..+.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~--------~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALL--------KEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544433 2334555566666666555555444333
No 137
>PRK11546 zraP zinc resistance protein; Provisional
Probab=66.02 E-value=80 Score=29.64 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 012231 69 AQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRV 123 (468)
Q Consensus 69 ~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~ 123 (468)
..+|.++|..+...|..+ |..|..|..-|+....-.+++|..|..||..|..
T Consensus 52 ~q~I~~~f~~~t~~LRqq---L~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQ---LVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888888888776 4556777888888888888899999999998875
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.82 E-value=1.2e+02 Score=31.44 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 36 RVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
-+..|+.++..++.|++.-..-|...
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888876666543
No 139
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.65 E-value=2.4e+02 Score=31.90 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
+...+..|-.++..++.|++++-..|..... .+ .+ ..|..++..++.++..++...
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~--~e---~i-~~l~e~l~~l~~~l~~~~~~~ 444 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPS--EE---QI-AQLLEELGEAQNELFRSEAEI 444 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hH---HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888999999999888875432 22 22 445566666666666665444
No 140
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.53 E-value=1.9e+02 Score=30.61 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CC--------------ChHHHHHHH---HHHHHHHHHHHHH
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKVASVS---ST--------------PDVAAQKLK---EAHLEKMNALEGQ 86 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~s---s~--------------~~~~~~KLk---eeyrkKL~eLE~q 86 (468)
+.=+.+|-.....|+..-..+++...++........ .. ..+....|. ++++++|.+++..
T Consensus 22 q~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 22 QSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 334778888888888887777776666653322111 00 111122232 3467777777777
Q ss_pred HHHHHHHHHHH----------------HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012231 87 VLELKKKLELQ----------------FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEI 150 (468)
Q Consensus 87 l~eLkkKq~e~----------------~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI 150 (468)
+.-|+.+...+ +.|+..-++...++..|+.+++.+---|-.| ..|-.-|+.--.....|+
T Consensus 102 ~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl----~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 102 IKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL----VTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 77777766543 5677777788888888888888887766654 467778888888888899
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHH
Q 012231 151 FQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATK---RLKELLESRK 200 (468)
Q Consensus 151 ~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~K---RLK~lL~~rk 200 (468)
..+=.-+-.+-..|..|=+.|.-...-|+.=.||...+.. +-|.+|+.++
T Consensus 178 n~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~ 230 (319)
T PF09789_consen 178 NYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKR 230 (319)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888777777778888888888888778888888877765 4577888543
No 141
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.31 E-value=91 Score=30.06 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~ 95 (468)
.-..++..|..++..++.++.++...+........+. .-+.....+|.+|+.++..|+....
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776665432111111 1122234556666666666665544
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.10 E-value=1e+02 Score=32.18 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=37.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 102 TQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENR 158 (468)
Q Consensus 102 K~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~R 158 (468)
+....-..++..|...|.....++..+...|.+--....+.+.--..||..|+..-+
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333444567777888888888888888888877666554444444567776665543
No 143
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.96 E-value=1.3e+02 Score=34.75 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLR 122 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK 122 (468)
.+|++|+-.-|..++++. +.-+.-+...+-+.+.+++.-..|+..|+
T Consensus 198 ~e~E~K~R~se~l~qevn--~~kv~e~~~erlqye~klkstk~e~a~L~ 244 (861)
T KOG1899|consen 198 NETEKKLRLSENLMQEVN--QSKVGEVVQERLQYETKLKSTKGEMAPLR 244 (861)
T ss_pred hhHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 445555555555555554 23333333344444444444444444443
No 144
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.60 E-value=1.5e+02 Score=29.15 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEI 150 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI 150 (468)
+.+..|-..+..+..|+..+....-+...+...+..|..|+.++..|...-...++.|.. +|=..++..++++
T Consensus 51 ~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~---qfl~EK~~LEke~ 123 (206)
T PF14988_consen 51 ELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES---QFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 334445555666777888888889999999999999999999999998887776666654 4555555555544
No 145
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.42 E-value=21 Score=29.93 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 012231 85 GQVLELKKKLELQFQFSTQKPKGDEAAKRFQD--------EIQKLRVQKVQLQCKL 132 (468)
Q Consensus 85 ~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~--------EIq~MK~qKVqL~KKM 132 (468)
..|..|+.+-....+|......-+..|.+... ||..||+||++|--.|
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi 62 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEI 62 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Confidence 45556666666666666666677777777755 9999999999986554
No 146
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.48 E-value=1.7e+02 Score=29.38 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 147 QKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 147 eKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
+.+|.+|..+..++..+...|+....
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666555433
No 147
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=63.22 E-value=1.5e+02 Score=28.83 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKK 92 (468)
Q Consensus 78 kKL~eLE~ql~eLkk 92 (468)
.++..|..+|.+|+.
T Consensus 12 ~ki~~L~n~l~elq~ 26 (194)
T PF15619_consen 12 HKIKELQNELAELQR 26 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 148
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.02 E-value=1.6e+02 Score=28.92 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012231 37 VHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~ 59 (468)
|..+...+..+..+++.+...+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665554
No 149
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.75 E-value=2.2e+02 Score=30.56 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVS------STPDV-AAQKLKEAHLEKMNALEGQVLELKKKLE-LQFQFSTQ 103 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~s------s~~~~-~~~KLkeeyrkKL~eLE~ql~eLkkKq~-e~~rLlK~ 103 (468)
.|...+..|+.++..++.++.+|.+.+.+.. +..+. ........|......+..++...+.... ....+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKT 173 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Confidence 4555566666666666666666655443211 01100 0111112344444444444444333332 23344444
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKV 126 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKV 126 (468)
....+.++..++.+++.++.+.-
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666655555444
No 150
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.60 E-value=30 Score=27.66 Aligned_cols=61 Identities=31% Similarity=0.422 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAA-QKLKEAHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~-~KLkeeyrkKL~eLE~ql~eLkkKq~ 95 (468)
++..+.-|+.++..++.+++.+...|+|-.= -..+ ..+-+..+.+|.+++.++..|...+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F--~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENF--VEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTH--HHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888876310 1111 23446667777777777777765543
No 151
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.32 E-value=2.4e+02 Score=30.68 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=15.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 012231 157 NRRNEYELHLLSALNQRLKLVLQRKTKE 184 (468)
Q Consensus 157 ~RK~q~ei~kLe~~~~kQ~~VLKRKtEE 184 (468)
..-=++.|.+|| +..++++.+-..-|
T Consensus 307 ~Es~qtRisklE--~~~~Qq~~q~e~~~ 332 (395)
T PF10267_consen 307 MESCQTRISKLE--QQQQQQVVQLEGTE 332 (395)
T ss_pred HHHHHHHHHHHH--HHHhhhhhhhcccc
Confidence 444567888999 44455555444444
No 152
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=62.28 E-value=98 Score=32.22 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
-=.||.+||.++..|.+|+..-.-.|.+.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSl 44 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESL 44 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34689999999999999999887777654
No 153
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=61.15 E-value=1.3e+02 Score=27.19 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSS-TPDVAAQKLKEAHLEKMNALEGQVLE 89 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss-~~~~~~~KLkeeyrkKL~eLE~ql~e 89 (468)
+.....+|+.+...++.++...+.+...+...|..... -+++.......++..+..+|+.....
T Consensus 34 ~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~ 98 (158)
T PF03938_consen 34 GKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQ 98 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888877765322 23344444444444444444443333
No 154
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.81 E-value=1.5e+02 Score=27.97 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012231 113 RFQDEI 118 (468)
Q Consensus 113 ~L~~EI 118 (468)
.|+.+|
T Consensus 142 ~lr~~i 147 (177)
T PF07798_consen 142 NLRTEI 147 (177)
T ss_pred HHHHHH
Confidence 333333
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.33 E-value=2.8e+02 Score=30.86 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012231 113 RFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKAS--LQKEIFQLMKENRRN-EYELHLLSALNQRLKLVLQRKTKEAFEAT 189 (468)
Q Consensus 113 ~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~--reKEI~QLKKe~RK~-q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~ 189 (468)
.|.++...+-+.+.-+-++|.+=..++.+|..+ .++|+.+ -.+++ +.-..+|+.+.+++...+.-+-+.+.-++
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~---~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK---KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555544321 1222222 22222 23345677777777888888888888888
Q ss_pred HHHHHHH
Q 012231 190 KRLKELL 196 (468)
Q Consensus 190 KRLK~lL 196 (468)
-+|++++
T Consensus 442 EQlrDlm 448 (493)
T KOG0804|consen 442 EQLRDLM 448 (493)
T ss_pred HHHHhHh
Confidence 8888864
No 156
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.48 E-value=2.9e+02 Score=30.79 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 90 LKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCK 143 (468)
Q Consensus 90 LkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k 143 (468)
|.++.....+-.+.-...+..+.....++..+......+......+.++.--+-
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt 145 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT 145 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444444444444455666666777777777766666666666655544433
No 157
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.65 E-value=1.3e+02 Score=26.23 Aligned_cols=31 Identities=3% Similarity=0.268 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcc
Q 012231 31 EHYEKRVHELEQENDTLKREIEEL---RFKVASV 61 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDel---l~~L~~~ 61 (468)
+.|...+..+..++..++.++.+. +.+|..+
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777888888888888766664 4555554
No 158
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.53 E-value=4.4e+02 Score=31.99 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEEL-------RFKVASVSS----TPDVAAQKLKEAHLEKMNALEGQVLELKKKL-ELQFQ 99 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDel-------l~~L~~~ss----~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq-~e~~r 99 (468)
--|.+...|+.++..++.-.|++ -+++++..+ .+..+.+.| ++|-.||++.=-.+.+|-... .+|.+
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkql-EqqN~rLKdalVrLRDlsA~ek~d~qK 400 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQL-EQQNARLKDALVRLRDLSASEKQDHQK 400 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34555555555555555444443 455555432 234455667 788888888777777765433 33555
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHH-------HHHHHhhHHHHHH
Q 012231 100 FSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASL------QKEIFQL-------MKENRRNEYELHL 166 (468)
Q Consensus 100 LlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~r------eKEI~QL-------KKe~RK~q~ei~k 166 (468)
+.+ .+..++.||..++++|..|.+++-+---.-..++.+- +-=|.|| ...-+--+.+|-.
T Consensus 401 ~~k-------elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~d 473 (1243)
T KOG0971|consen 401 LQK-------ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGD 473 (1243)
T ss_pred HHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 544 4567788999999999998888765433333333221 1112232 2233344556666
Q ss_pred HHHHHHHHHHH
Q 012231 167 LSALNQRLKLV 177 (468)
Q Consensus 167 Le~~~~kQ~~V 177 (468)
||+..+-++++
T Consensus 474 lEalee~~EQL 484 (1243)
T KOG0971|consen 474 LEALEEMNEQL 484 (1243)
T ss_pred HHHHHHHHHHH
Confidence 66666665553
No 159
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.38 E-value=2.4e+02 Score=28.96 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQK 120 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~ 120 (468)
.++..+..++.++..+++.......|.....-+...+...+.++..
T Consensus 162 ~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~ 207 (423)
T TIGR01843 162 GLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAE 207 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344555555555555555555555555544444444443333333
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.25 E-value=3.6e+02 Score=30.86 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 116 DEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 116 ~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
.-|+.|+.+-..|..++.+-+.+|
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTM 311 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666666555544
No 161
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.60 E-value=4.1e+02 Score=31.35 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhccc
Q 012231 37 VHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ-----------FQFSTQKP 105 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~-----------~rLlK~k~ 105 (468)
|.+.-.+++.+..|.+..++..-... .....+++.+++.+|.++..+|..+....... ..|...+.
T Consensus 54 Lkec~~qlr~~ree~eq~i~~~~~~~---s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~ 130 (769)
T PF05911_consen 54 LKECMRQLRQVREEQEQKIHEAVAKK---SKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKS 130 (769)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667776665533211 23445666666666666666665554443332 23444555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKVQL 128 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKVqL 128 (468)
+.+..+..|...++.+-+.-.-|
T Consensus 131 ~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 131 QAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555544444
No 162
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.98 E-value=2.9e+02 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
.|+..+..|..++..+..-.+++...|.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~ 206 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLK 206 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444454555444444454444443
No 163
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.97 E-value=57 Score=31.45 Aligned_cols=71 Identities=28% Similarity=0.451 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~ 95 (468)
+.+..+..|+..|..|+.++..|+.+..++...+.................|.-.+..|..+...|+....
T Consensus 117 ~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 117 QAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 164
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=54.93 E-value=56 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLE 89 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~e 89 (468)
+......+|.+.+.+|...+.|+.+.... +...|| .-|++||.+.+.+|.+
T Consensus 64 l~~e~q~ki~~~~~kV~ere~eL~eA~~~---------G~~~KI-~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 64 LKAERQQKIAEKQQKVAEREAELKEAQAK---------GDSDKI-AKRQKKLAEAKAELKE 114 (115)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHHH-HHHHHHHHHHHHHHhh
Confidence 45566777777777777777777776655 222566 5677888887777653
No 165
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.44 E-value=4.1 Score=46.26 Aligned_cols=73 Identities=25% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLK------LVLQRK 181 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~------~VLKRK 181 (468)
+..|+.|+.++.......+ +.+-|+++..+++.++. +.++...++..|...+.-.. .-|++|
T Consensus 229 e~~i~~Le~el~~~~~~~~-i~k~l~~ql~~i~~LE~-----------en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~k 296 (722)
T PF05557_consen 229 EQKIKELEAELKDQESDAE-INKELKEQLAHIRELEK-----------ENRRLREELKHLRQSQENVELLEEEKRSLQRK 296 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5555555555555554432 45555555555444443 55555556555555444332 234555
Q ss_pred hHHHHHHHHHH
Q 012231 182 TKEAFEATKRL 192 (468)
Q Consensus 182 tEEaaAa~KRL 192 (468)
.+-+..+...|
T Consensus 297 l~~~E~~~~el 307 (722)
T PF05557_consen 297 LERLEELEEEL 307 (722)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 166
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.25 E-value=2.8e+02 Score=30.66 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHH
Q 012231 129 QCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLS 168 (468)
Q Consensus 129 ~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe 168 (468)
|.+-++++++.|..-.--+|||+.||+..-+.+..|..|+
T Consensus 143 m~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 143 MDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5677899999999999999999999999999999999999
No 167
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=54.23 E-value=6 Score=43.84 Aligned_cols=44 Identities=32% Similarity=0.815 Sum_probs=36.5
Q ss_pred CCCCcccccCCCCccccCccccccCCCCCCCC-----cccCCcccCCCCCC
Q 012231 348 PASGVCCSCSKKSSCKTSKCECRVSGGSCGTS-----CGCAANKCTNRELG 393 (468)
Q Consensus 348 ~~~~~cc~csk~s~ckt~~c~c~~~~~~c~~~-----c~c~~~kc~n~~~~ 393 (468)
++...+|+|- ..|-.-.|.|--+|.-|-.. |||..--|.|-.+-
T Consensus 304 SReeCGCsCr--~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~GR 352 (640)
T KOG3813|consen 304 SREECGCSCR--GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEGR 352 (640)
T ss_pred hHHhhCCccc--ceeChhhcchhccCceEeecCcccccccchhhcCCCccc
Confidence 3455677776 69999999999999999643 99999999998763
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.09 E-value=1.6e+02 Score=28.15 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEE 53 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDe 53 (468)
+..++..+..++.|..+
T Consensus 69 ~~~le~~~~~l~~ELae 85 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAE 85 (194)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33344444444333333
No 169
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.07 E-value=96 Score=36.14 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVL 88 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~ 88 (468)
.++.-|..|+.+...++.+++++...+. ...+++++|+.++..|+.+-.
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~--------e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLK--------EQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444443322 233444444444444444433
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.34 E-value=2.3e+02 Score=27.85 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 77 LEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 77 rkKL~eLE~ql~eLkkKq~e 96 (468)
+.+|.+|+.|+.+|+.+..+
T Consensus 92 ~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888866665
No 171
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.89 E-value=2.3e+02 Score=27.61 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLK---EAHLEKMNALEGQVLELKKKLELQFQFSTQ 103 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLk---eeyrkKL~eLE~ql~eLkkKq~e~~rLlK~ 103 (468)
..|+.-|-.=...-=.-|..|..|+.++-...... ......+. .....-|..++.++.+|++....+.+--..
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~----~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~ 87 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERN----EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666665544444444445554444444332211 01111111 122455677777888888877777666555
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTK 183 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtE 183 (468)
-.....+++.+..+|..++-.---|..+.. +...+|+ .| -++-..-|...+....-+..+|.+|..
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~---------kle~Erd--eL---~~kf~~~i~evqQk~~~kn~lLEkKl~ 153 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFE---------KLEQERD--EL---YRKFESAIQEVQQKTGLKNLLLEKKLQ 153 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666554443333221 1111111 11 123446677788888888999999988
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHH
Q 012231 184 EAFEATK-RLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQ 229 (468)
Q Consensus 184 EaaAa~K-RLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~ 229 (468)
.+...-- +=..+.+.-.+ .+-....+.+|..-|+-++.
T Consensus 154 ~l~~~lE~keaqL~evl~~--------~nldp~~~~~v~~~l~~~l~ 192 (201)
T PF13851_consen 154 ALSEQLEKKEAQLNEVLAA--------ANLDPAALSQVSKKLEDVLD 192 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHH
Confidence 7655422 11122211111 22333456666666666654
No 172
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=52.77 E-value=4.6 Score=47.13 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHhhcchhHHHh
Q 012231 279 SEFSDLKEEVARLSNLISQMAVPKAEII 306 (468)
Q Consensus 279 ~e~~elkE~~~~l~~~l~~~e~~k~e~~ 306 (468)
..+..+++.+..|..-|+.+-.|..+..
T Consensus 792 k~~~~~~d~~~kl~~k~k~~krq~eeaE 819 (859)
T PF01576_consen 792 KNAERLQDLVDKLQLKLKQLKRQLEEAE 819 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4455566777777777777776666654
No 173
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.60 E-value=3.8e+02 Score=31.38 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 77 LEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 77 rkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
...+..|-..|.+.+....+ ...+.+.....+.....|+.+...++..+.+++.+.++|+.+.
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~ 573 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEA 573 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443444333333322 3444555556666777788888888888888888888777643
No 174
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.59 E-value=2.3e+02 Score=27.56 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=39.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 103 QKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 103 ~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
...+-+..|..|+..|..|+.+...+- ..+....+||.+|+.....-..++...+..++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~-----------~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLK-----------EKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776665544333 23333348999999998888888888777665
No 175
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.28 E-value=3.7e+02 Score=29.90 Aligned_cols=77 Identities=25% Similarity=0.320 Sum_probs=44.2
Q ss_pred chhHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc----------ccccccccCCCCCccch
Q 012231 214 HSQFQ-SIE--HELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENS----------RCLLEDDEFDPGVKDSE 280 (468)
Q Consensus 214 ~~~ik-WLe--~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~~~----------~~~l~dke~~c~~kd~e 280 (468)
...++ ||. +|+|+..- .--+...|.+| ...++..+.++...+ ...+-| -|+-
T Consensus 334 P~aLQ~wLq~T~E~E~q~~-~kkrqnaekql-------~~Ake~~eklkKKrssv~gtl~vahgsslDd-------VD~k 398 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYY-NKKRQNAEKQL-------KEAKEMAEKLKKKRSSVFGTLHVAHGSSLDD-------VDHK 398 (575)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHhhhHHHHH-------HHHHHHHHHHHHhhcchheeeeeccccchhh-------HHHH
Confidence 34555 876 55655542 12233344444 444455555554422 133555 7788
Q ss_pred hhhhHHHHHHHHHHHHhhcchhHHH
Q 012231 281 FSDLKEEVARLSNLISQMAVPKAEI 305 (468)
Q Consensus 281 ~~elkE~~~~l~~~l~~~e~~k~e~ 305 (468)
|-++|--+.++-.+|+.---+=.++
T Consensus 399 Ileak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 399 ILEAKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888655444443
No 176
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.90 E-value=3.3e+02 Score=29.10 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 82 ALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLE 135 (468)
Q Consensus 82 eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEE 135 (468)
.|+.-+.+++..+.+.+.+...-......|..+..++..+-.+=-++...|.+-
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555556666666555554444444444443
No 177
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.68 E-value=1.7e+02 Score=28.43 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----H
Q 012231 31 EHYEKRVHELEQE---NDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEK---MNALEGQVLELKKKLELQFQ----F 100 (468)
Q Consensus 31 ~qYEkKL~eLE~e---i~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkK---L~eLE~ql~eLkkKq~e~~r----L 100 (468)
..|-+-+.+||.- +..++.-+++||.-... ....-+...++......+ ...++..|.+|..+..+..+ +
T Consensus 72 ~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~-~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 72 ESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDD-QEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL 150 (190)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777788773 55666666666543221 111112222332222222 45566777777776665444 5
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHH
Q 012231 101 STQKPKGDEAAKRFQDEIQKLRVQK 125 (468)
Q Consensus 101 lK~k~ksE~kik~L~~EIq~MK~qK 125 (468)
-..++..+..|.+|+.++..|+..=
T Consensus 151 ~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 151 KEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888888888777543
No 178
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=51.58 E-value=2.5e+02 Score=30.10 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCchHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q 012231 9 RQTSAVDSSSSSLSQSPAVDDKEHYEKR----------VHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLE 78 (468)
Q Consensus 9 ~~~~~~~~~~~~~~~~d~q~mk~qYEkK----------L~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrk 78 (468)
.....++..+....-..++.++.+|... +..-.-++..++.++.++...+. ....++...|..
T Consensus 270 ~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~-------~e~~~~~~~~~~ 342 (458)
T COG3206 270 PLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA-------AELRQILASLPN 342 (458)
T ss_pred cccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH-------HHHHHHHHhchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 79 KMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQ 138 (468)
Q Consensus 79 KL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsek 138 (468)
.+..++.+.+.|.+.......-...--....++.+|+.|++.-+..=.+|..++++-..+
T Consensus 343 ~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 343 ELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 179
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.56 E-value=5.8e+02 Score=31.92 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccchH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKL----ELQFQFSTQKPKGD 108 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq----~e~~rLlK~k~ksE 108 (468)
|...+..|+.+...+..+.+.+...+.-....++.....+-..|.+++.+++..+..+.... .+...+...+...+
T Consensus 266 ~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~ 345 (1294)
T KOG0962|consen 266 LLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELD 345 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444433333455555555566666655555555555444 44566677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 109 EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 109 ~kik~L~~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
-.+..|+.++......+.++=-.+.+.+-+|
T Consensus 346 ~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~ 376 (1294)
T KOG0962|consen 346 LEQSELQAEAEFHQELKRQRDSLIQELAHQY 376 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777776654444444433
No 180
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.36 E-value=4.4e+02 Score=30.47 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 012231 17 SSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQV---LELKKK 93 (468)
Q Consensus 17 ~~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql---~eLkkK 93 (468)
-+-+.|++ |+.--.-.+-.+..|...|..++++.|-|+..|..+... -+.--+.+.+ +|+.++..++ .+++++
T Consensus 322 ~~~~~D~N-~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~--~~R~~~s~A~-~K~~E~K~~~~~~~~~~r~ 397 (852)
T KOG4787|consen 322 MFCRCDGN-AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEAD--CKRGGVTSAH-SKAGEFKLTPEMEKDMSKM 397 (852)
T ss_pred HHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh--hcccchHHHH-HHhhhhhcChHhHhHHHHH
Confidence 34567888 665555678889999999999999999998887765331 1111111111 4555554432 344555
Q ss_pred HHHHHHHHhcccchHHHHHHHH
Q 012231 94 LELQFQFSTQKPKGDEAAKRFQ 115 (468)
Q Consensus 94 q~e~~rLlK~k~ksE~kik~L~ 115 (468)
+.-...++..+-.--..+++|+
T Consensus 398 i~~~~~~~~~~~~~s~~~r~L~ 419 (852)
T KOG4787|consen 398 IVTISELERKNLELTTQVKQLE 419 (852)
T ss_pred HHHHHHHHHhcccHHHHHHHHh
Confidence 5555555544444444444444
No 181
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=51.02 E-value=3.5e+02 Score=29.13 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 22 SQSPAVDDKEHYEKRVHELEQENDTLKREIEEL 54 (468)
Q Consensus 22 ~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDel 54 (468)
+..++..-....+.++..|+.++..|+.+++.+
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777777777643
No 182
>PLN02381 valyl-tRNA synthetase
Probab=50.74 E-value=60 Score=39.15 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
++..+..|+.++..+++|++.+...|+|..=....- ..+.+..+.||.+++.++..|...+.....
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP-~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 1060 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVP-ANIQEEDARKLTKLLQELEFFEKESKRLEA 1060 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999998743111111 244467788889999888888876665443
No 183
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.62 E-value=1e+02 Score=27.46 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKLEL-QF---QFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKL 132 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq~e-~~---rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKM 132 (468)
+|..+| +-|..+...|++..-+ ++ .|...-...|..|+++..|+..|-..--+|.+++
T Consensus 2 kla~eY----sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV 63 (102)
T PF10205_consen 2 KLAQEY----SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRV 63 (102)
T ss_pred hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777 4577888888887644 33 3444455677788888888888876666666554
No 184
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.81 E-value=2e+02 Score=26.11 Aligned_cols=57 Identities=28% Similarity=0.297 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHH
Q 012231 111 AKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLL 167 (468)
Q Consensus 111 ik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kL 167 (468)
+..+......+..+-..+...++.+.+.+...+..-.-=-.|..-+.||++.+|.+|
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 89 LASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444333333332233333333444444444443
No 185
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.72 E-value=2.2e+02 Score=26.57 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELR 55 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell 55 (468)
+.+|--|+.++..++.+...+.
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLI 44 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444444444444444433
No 186
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=49.72 E-value=1.5e+02 Score=27.58 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 98 FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKA 144 (468)
Q Consensus 98 ~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~ 144 (468)
.......+....++......+..+=.++-+-+..++.|.+.||.|-.
T Consensus 53 ~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 53 LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 33444445556666677777778888888888899999999999953
No 187
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.52 E-value=5.5 Score=45.25 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 012231 24 SPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLE---KMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 24 ~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrk---KL~eLE~ql~eLkkKq~e~~rL 100 (468)
.++...+..|+........++..++.+.+++...|....+...+ ...++.++.. +|.+++.++..++....+ +
T Consensus 491 eda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d-~~~lk~~le~~~~~l~e~~~e~~~~~~~le~---l 566 (713)
T PF05622_consen 491 EDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSED-SSELKQKLEEHLEKLRELKDELQKKREQLEE---L 566 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 34555667777777777777777777777777776554332221 1222223333 333333333333222222 1
Q ss_pred Hhcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHH---hhHHHHHHHHHHHhhHHHHHHHH
Q 012231 101 STQKPKG-DEAAKRFQDEIQKLRVQKVQLQCKLKL----EAVQFRL----CKAS---LQKEIFQLMKENRRNEYELHLLS 168 (468)
Q Consensus 101 lK~k~ks-E~kik~L~~EIq~MK~qKVqL~KKMKE----EsekfR~----~k~~---reKEI~QLKKe~RK~q~ei~kLe 168 (468)
......+ ..+|..|+..+...... |+.|.+ -.++.+. +.-. ..-||..|++...-.+..|..|+
T Consensus 567 ~~~~~~~~~~ki~~Le~~L~~k~~e----~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE 642 (713)
T PF05622_consen 567 EQELNQSLSQKIEELEEALQKKEEE----MRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLE 642 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHhHHH----HHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112 44455555554432211 111211 1111111 0111 34677888888888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 012231 169 ALNQRLKLVLQRKTKEAFEAT 189 (468)
Q Consensus 169 ~~~~kQ~~VLKRKtEEaaAa~ 189 (468)
..+++-. -.+.+||-..+.
T Consensus 643 ~~~e~~k--~~~~~EekLi~s 661 (713)
T PF05622_consen 643 KELEKSK--QMREQEEKLIVS 661 (713)
T ss_dssp ---------------------
T ss_pred HHhhhhh--hHHHHHHHHHHH
Confidence 8885444 346677754443
No 188
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=48.87 E-value=82 Score=29.52 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 38 HELEQENDTLKREIEELRFKVASVSSTPD-VAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 38 ~eLE~ei~~lq~ERDell~~L~~~ss~~~-~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
...-.+..+++.|+.++..++.++++.++ ..-.|+ ++++..++.++..+++....
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl----~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKL----NRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999877632 122444 57778888887777665543
No 189
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.80 E-value=1.6e+02 Score=25.13 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcchh
Q 012231 223 ELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPK 302 (468)
Q Consensus 223 ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~~k 302 (468)
-++.++...+.++.+...++.|-.++..+..+.......+ . +..+|++++..|..-+..++.+.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-----~-----------~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-----E-----------DAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-----C-----------CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-----c-----------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444777777888888888888888888887776665544 2 25555556666666666666665
Q ss_pred HHHhhhh
Q 012231 303 AEIIHNK 309 (468)
Q Consensus 303 ~e~~~~~ 309 (468)
.++..+.
T Consensus 91 ~~~e~~l 97 (108)
T PF02403_consen 91 KELEEEL 97 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 190
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.66 E-value=5e+02 Score=30.34 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012231 138 QFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRK 200 (468)
Q Consensus 138 kfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk 200 (468)
+|..--...+.++.=.+-+.+.-...+..++-....|-.-|+-..-.+.++.-+|.+..+.+.
T Consensus 162 k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q 224 (716)
T KOG4593|consen 162 KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ 224 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566666777777777777777777777777777777777777766666555
No 191
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=48.66 E-value=3.8e+02 Score=28.87 Aligned_cols=124 Identities=11% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSS-TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPK- 106 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss-~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~k- 106 (468)
....++.++.+++.++...+.+.......-..... ..+.....+ .++..++..++.++..++.........+.....
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~ 240 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEI-SEAQEELEAARLELNEAIAQRDALKRQLGGEEPV 240 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45556667777777777777666666543211111 111122333 455666666666666666665554433221000
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012231 107 ----GDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKEN 157 (468)
Q Consensus 107 ----sE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~ 157 (468)
....+..|...|..+..+...|..+..++.-+....+ ++|..|+...
T Consensus 241 ~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~----~qi~~l~~~l 291 (498)
T TIGR03007 241 LLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATK----REIAQLEEQK 291 (498)
T ss_pred cCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHH----HHHHHHHHHH
Confidence 0112335566666666666666666666665555554 3555555543
No 192
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.52 E-value=4.4e+02 Score=30.88 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 97 QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 97 ~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
...+.+.....+.....|+.+.+.++..+..++.+.++++++.
T Consensus 536 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~ 578 (782)
T PRK00409 536 AEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666777778888888888888887777653
No 193
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.30 E-value=2.5e+02 Score=27.78 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQ----FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~----~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
..++-.+++|+.++..+.++.... ...-..++.+++.-..|..++..++. .++.||.+..+++.....---.
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk----~~e~lr~el~k~~e~dpqv~~k 152 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK----ILESLRWELAKIQETDPQVFEK 152 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCHHHHHH
Confidence 345678889999999988876543 44455667777777788888888876 5678888888888877643333
Q ss_pred HHHHH
Q 012231 150 IFQLM 154 (468)
Q Consensus 150 I~QLK 154 (468)
+.++.
T Consensus 153 ~~~~~ 157 (203)
T KOG3433|consen 153 KVHLE 157 (203)
T ss_pred HHHHH
Confidence 33333
No 194
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=48.10 E-value=4.2e+02 Score=29.26 Aligned_cols=101 Identities=11% Similarity=0.146 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAH---LEKMNALEGQVLELKKKLELQFQFST 102 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeey---rkKL~eLE~ql~eLkkKq~e~~rLlK 102 (468)
...++.+.++++..|+.++.+-++.-..+.+++. .+..+| ..++...|.+|++|+..... |..
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~-----------~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~---l~e 69 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLV-----------ILRAESRAIKAKLQEKELELNRLQEENTQ---LNE 69 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3456777888888888888877777666665543 222233 56778888888888765433 333
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 103 QKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFR 140 (468)
Q Consensus 103 ~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR 140 (468)
...+.+...+.|-.++.....-+.+++..+++=.++.-
T Consensus 70 ~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~ 107 (459)
T KOG0288|consen 70 ERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKA 107 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33336666677777777777777777666666555543
No 195
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.06 E-value=5.6e+02 Score=30.70 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 114 FQDEIQKLRVQKVQLQCKLKLEAVQFRLCK 143 (468)
Q Consensus 114 L~~EIq~MK~qKVqL~KKMKEEsekfR~~k 143 (468)
=+.||.+|-+.|-.|-|+-+.|-++.|..+
T Consensus 391 rkkeie~rEaar~ElEkqRqlewErar~qe 420 (1118)
T KOG1029|consen 391 RKKEIERREAAREELEKQRQLEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888877777666555555544433
No 196
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=48.05 E-value=1.1e+02 Score=33.13 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=62.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 21 LSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFK-VASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 21 ~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~-L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
.|-.++..++.+...+|-.+.++|+--+.-||.-.+. |.-+...+..+..+|++-|+++=+---..|+.|++|+....+
T Consensus 33 ~~~qk~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqksahtiaqlqkkL~~y~~ 112 (455)
T KOG3850|consen 33 KDVQKLKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKSAHTIAQLQKKLEQYHR 112 (455)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3334466788888899999999988888878764433 333334566788999999999998888889999999888554
Q ss_pred HHhccc
Q 012231 100 FSTQKP 105 (468)
Q Consensus 100 LlK~k~ 105 (468)
-++.-+
T Consensus 113 rLkeie 118 (455)
T KOG3850|consen 113 RLKEIE 118 (455)
T ss_pred HHHHHh
Confidence 444433
No 197
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=47.48 E-value=8.7 Score=30.05 Aligned_cols=39 Identities=28% Similarity=0.822 Sum_probs=31.9
Q ss_pred cccccCCC----CccccCccccccCCCCCCCCcccCCcccCCCCC
Q 012231 352 VCCSCSKK----SSCKTSKCECRVSGGSCGTSCGCAANKCTNREL 392 (468)
Q Consensus 352 ~cc~csk~----s~ckt~~c~c~~~~~~c~~~c~c~~~kc~n~~~ 392 (468)
.-|.|... ..|. .-|-.|++..-|+..|.|. ..|+|+.-
T Consensus 4 ~~C~C~~~~~~~~~Cg-sdClNR~l~~EC~~~C~~G-~~C~NqrF 46 (51)
T smart00570 4 MTCECKPTDDDEGACG-SDCLNRMLLIECSSDCPCG-SYCSNQRF 46 (51)
T ss_pred ceeeCccCCCCCCCcc-hHHHHHHHhhhcCCCCCCC-cCccCccc
Confidence 45777764 5787 7799999999999999988 68999863
No 198
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=47.35 E-value=3.7e+02 Score=28.41 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 012231 81 NALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLR 122 (468)
Q Consensus 81 ~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK 122 (468)
+.|..+|..|+....+....+. ..++-.|.+|..-|..|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le--~EqE~~V~kL~k~i~~Le 148 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLE--QEQEYLVNKLQKKIERLE 148 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHH
Confidence 4455555555544443322221 123333444544454444
No 199
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.86 E-value=1.7e+02 Score=24.62 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALEGQVLELK 91 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLk 91 (468)
.|..++..++..|..++..|.
T Consensus 65 ~l~~~~~~~~~~l~~q~~~l~ 85 (127)
T smart00502 65 DLEEQKENKLKVLEQQLESLT 85 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 200
>PF14282 FlxA: FlxA-like protein
Probab=46.85 E-value=1.1e+02 Score=26.92 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEA 136 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEs 136 (468)
..++..|+..|..|-+|=.+|+.+..+..
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555544443
No 201
>PRK11546 zraP zinc resistance protein; Provisional
Probab=46.82 E-value=2e+02 Score=27.05 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
.++.+.+.|..+...|-.++..-+.|..-|+.. .++|. .++.+|..||.+|+.++.+
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~-----~~pD~----------~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTA-----NPPDS----------SKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCH----------HHHHHHHHHHHHHHHHHHH
Confidence 356678889999999998888777776666433 22233 3345555666666655544
No 202
>PLN02943 aminoacyl-tRNA ligase
Probab=45.14 E-value=71 Score=38.03 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
++..+..|+.++..+++|++.+...|+|..=....- ..+.+.-+.||.+++.++..++..+....
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP-~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAP-EDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999998743111111 23445667888888888888887766654
No 203
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=45.06 E-value=3.5e+02 Score=27.49 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 23 QSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFST 102 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK 102 (468)
|..+..+-+.|-.....++..|..+.......-.++ +..+.+...++.+...+...+..+.+.
T Consensus 171 g~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~---------------~~~~~k~e~~e~e~~~l~e~~~~~~~~-- 233 (297)
T PF02841_consen 171 GVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEI---------------EEEQAKAEAAEKEKEKLEEKQKEQEQM-- 233 (297)
T ss_dssp -TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHhhHHHHHHHH
Q 012231 103 QKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEI--FQLMKENRRNEYELHLLS 168 (468)
Q Consensus 103 ~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI--~QLKKe~RK~q~ei~kLe 168 (468)
.+.+...++..|..|+..-..-.+++..|.++.-..+.....++ .....+....+.+|..|+
T Consensus 234 ----le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 234 ----LEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 204
>PF15294 Leu_zip: Leucine zipper
Probab=45.02 E-value=3.8e+02 Score=27.88 Aligned_cols=144 Identities=24% Similarity=0.281 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 012231 38 HELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDE 117 (468)
Q Consensus 38 ~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~E 117 (468)
.-|..+|..|+.|-+.|...|.... ... -.+-.-=..++.+|.+|+..+..+.-.... .-....+..|+.-
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le----~~a----t~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~-~~~~q~l~dLE~k 198 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLE----KQA----TSALDEKSKLEAQLKELQDEQGDQKGKKDL-SFKAQDLSDLENK 198 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHhhhccccc-cccccchhhHHHH
Confidence 4466677777777777766654321 111 111112244566666666644444322111 1134445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHH
Q 012231 118 IQKLRVQKVQLQCKLKLEAVQFRLCKASLQ---KEIFQLMKENRRNEYELHL---LSALNQRLKLVLQRKTKEAFEATKR 191 (468)
Q Consensus 118 Iq~MK~qKVqL~KKMKEEsekfR~~k~~re---KEI~QLKKe~RK~q~ei~k---Le~~~~kQ~~VLKRKtEEaaAa~KR 191 (468)
+..|| .++-+.|...+..-...+..-. -+|..+....+--+.++-+ --+.+..=..+|..|.+++.++++|
T Consensus 199 ~a~lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkr 275 (278)
T PF15294_consen 199 MAALK---SELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKR 275 (278)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHH
Confidence 44443 3444444444333222222110 1122222221111111111 1122334445577777777777777
Q ss_pred HH
Q 012231 192 LK 193 (468)
Q Consensus 192 LK 193 (468)
|.
T Consensus 276 l~ 277 (278)
T PF15294_consen 276 LA 277 (278)
T ss_pred hc
Confidence 63
No 205
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.00 E-value=2e+02 Score=24.72 Aligned_cols=31 Identities=3% Similarity=0.200 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcc
Q 012231 31 EHYEKRVHELEQENDTLKREIEE---LRFKVASV 61 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDe---ll~~L~~~ 61 (468)
+.|...+..|..++..++.++.+ ++.+|...
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666777777777777766644 45555544
No 206
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.87 E-value=4.9e+02 Score=29.10 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 012231 39 ELEQENDTLKREIEELRFKVASVSST-PDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDE 117 (468)
Q Consensus 39 eLE~ei~~lq~ERDell~~L~~~ss~-~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~E 117 (468)
.++.++..++.++...+..|++..-. -.+....+.+.-..--..|++++..-+.-.....++...-.........|..|
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766666654321 11122333333333334455555555555555666666666666666666666
Q ss_pred HHHHHHH
Q 012231 118 IQKLRVQ 124 (468)
Q Consensus 118 Iq~MK~q 124 (468)
|..++..
T Consensus 333 i~~l~~s 339 (569)
T PRK04778 333 IDRVKQS 339 (569)
T ss_pred HHHHHHc
Confidence 6666665
No 207
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=44.72 E-value=5e+02 Score=29.14 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLK 175 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~ 175 (468)
+..+..-..||++|.+-|..|-+-...-.+ -||++..-++.+...|+..+++.+
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat~SALd--------------lLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKATTSALD--------------LLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456666666555555444433333 344555555555555555554443
No 208
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.71 E-value=2.3e+02 Score=28.66 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012231 128 LQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQR 173 (468)
Q Consensus 128 L~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~k 173 (468)
|+-=+...-+|||.--...|.|+.++..+...-+.+|.+|+++|-+
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778999999999999999999999999999999888754
No 209
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=44.43 E-value=74 Score=37.28 Aligned_cols=63 Identities=25% Similarity=0.363 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
++..+..|+.++..+++|++.+...|+|..=....- ..+.+.-+.||.+++.++..|...+..
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP-~~vve~e~~kl~~~~~~~~~l~~~l~~ 871 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAP-EEVVEKEREKLAEYEEKLAKLKERLAR 871 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999998732111111 234466678888888888888766544
No 210
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.00 E-value=6.6e+02 Score=30.34 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHhhcch
Q 012231 284 LKEEVARLSNLISQMAVP 301 (468)
Q Consensus 284 lkE~~~~l~~~l~~~e~~ 301 (468)
+..-+..|..-|.+++..
T Consensus 594 ~~~~~q~lq~al~~ld~P 611 (980)
T KOG0980|consen 594 LASGIQALQNALYQLDSP 611 (980)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 345566666667766665
No 211
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.61 E-value=1.1e+02 Score=31.56 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 012231 77 LEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDE 117 (468)
Q Consensus 77 rkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~E 117 (468)
--+++-|+.+|+.|++-+.+.-+++-.+ +.+|.+|..+
T Consensus 224 ~V~i~~lkeeia~Lkk~L~qkdq~ileK---dkqisnLKad 261 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKLLHQKDQLILEK---DKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhh---hhhhhccCcc
Confidence 3456778888888888877766655443 3445555443
No 212
>PF12785 VESA1_N: Variant erythrocyte surface antigen-1; InterPro: IPR024751 This entry represents variant erythrocyte surface antigen 1, versions a and b, of Babesia. Babesia bovis is a tick-borne, intra-erythrocytic, protozoal parasite of cattle that shares many lifestyle parallels with the most virulent of the human malarial parasites, Plasmodium falciparum. Babesia uses antigenic variation to establish consistent infections of long duration. The two variants of VESA1, a and b, are expressed from different but closely related genes, and variation is achieved through the involvement of a segmental gene conversion mechanism and low-frequency epigenetic in situ switching of transcriptional activity from the VESA1 gene-pair to a possible other gene pair [].
Probab=43.58 E-value=20 Score=39.16 Aligned_cols=27 Identities=37% Similarity=1.041 Sum_probs=20.4
Q ss_pred cccccCCCCc-ccc-CccccccCCCCCCC
Q 012231 352 VCCSCSKKSS-CKT-SKCECRVSGGSCGT 378 (468)
Q Consensus 352 ~cc~csk~s~-ckt-~~c~c~~~~~~c~~ 378 (468)
.+|.|+..+. |.. ++|+|-..|..|.-
T Consensus 149 ~~C~C~~ggg~csgGkkCkCa~aGkcckC 177 (462)
T PF12785_consen 149 DCCCCSTGGGGCSGGKKCKCAGAGKCCKC 177 (462)
T ss_pred CCCccCCCCCCccCCccccCCCCCcccCC
Confidence 4799988874 764 89999988876543
No 213
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=43.43 E-value=17 Score=38.20 Aligned_cols=19 Identities=37% Similarity=0.940 Sum_probs=15.7
Q ss_pred CCCCCCCcccCCcccCCCCC
Q 012231 373 GGSCGTSCGCAANKCTNREL 392 (468)
Q Consensus 373 ~~~c~~~c~c~~~kc~n~~~ 392 (468)
+--|+++|+|. ..|.||..
T Consensus 152 i~EC~~~C~C~-~~C~nRv~ 170 (364)
T KOG1082|consen 152 VFECSVACGCH-PDCANRVV 170 (364)
T ss_pred ccccccCCCCC-CcCcchhh
Confidence 34599999994 68999986
No 214
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=43.34 E-value=4.6e+02 Score=28.77 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 012231 228 VQVQKVSSEYERELEEMAGVINKLKLEAEMMKE 260 (468)
Q Consensus 228 v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~ 260 (468)
.....+.+.++..++++.++++.|+.++..+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445578889999999999999999998887754
No 215
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.98 E-value=2.3e+02 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 76 HLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 76 yrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
|+..+..+..++..|.....++..
T Consensus 15 ~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 216
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.90 E-value=6.1e+02 Score=29.63 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 70 QKLKEAHLEKMNALEGQVLELKKKLELQ-FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKAS 145 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~ql~eLkkKq~e~-~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~ 145 (468)
+.++++|-.++.....+| ..| ..|..+++++-..+..|++++..+...-..|..++.+=.++......+
T Consensus 546 ~vlreeYi~~~~~ar~ei-------~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEI-------QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655544333222 222 223335556667777788888888877777877777766666655543
No 217
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.67 E-value=1.9e+02 Score=24.94 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 012231 80 MNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRR 159 (468)
Q Consensus 80 L~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK 159 (468)
+..+|..|+..+........=++..+=+.+.=..|..|...++. .-...++++..|+++.||
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~------------------~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKE------------------KLENNEKELKLLRKENRK 68 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHH------------------HhhccHHHHHHHHHhhhh
Confidence 34445555555555555444455555555555566655555443 112356667777776666
Q ss_pred h
Q 012231 160 N 160 (468)
Q Consensus 160 ~ 160 (468)
+
T Consensus 69 ~ 69 (85)
T PF15188_consen 69 S 69 (85)
T ss_pred h
Confidence 4
No 218
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.22 E-value=6.4e+02 Score=29.75 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 012231 217 FQSIEHELEVTVQVQKVSSEYERELEE---MAGVINKLKLEAEM 257 (468)
Q Consensus 217 ikWLe~ElEv~v~~~Ea~~~LE~llE~---L~~E~~~Lk~e~e~ 257 (468)
+.|+..++.......+....|+..+++ +..++..+..+++.
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~ 706 (908)
T COG0419 663 VEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEE 706 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 446666666444444445555555544 55555555555443
No 219
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.82 E-value=5.3e+02 Score=28.67 Aligned_cols=51 Identities=22% Similarity=0.044 Sum_probs=39.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012231 151 FQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKA 201 (468)
Q Consensus 151 ~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~ 201 (468)
.||-.+.-.-...+..|..+..+++.=.+|-.+.+.+++-||.....-+..
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r 357 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR 357 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555677889999999999999999999999999887666653
No 220
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.51 E-value=3e+02 Score=25.69 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIE 52 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERD 52 (468)
.+.+++..+..++.|.+
T Consensus 82 e~~~~~~~l~~l~~el~ 98 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELD 98 (191)
T ss_pred hHHhHHHHHHHHHHHHH
Confidence 33333333333333333
No 221
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.93 E-value=4.8e+02 Score=28.98 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 80 MNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQF 139 (468)
Q Consensus 80 L~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekf 139 (468)
+.-|+.+|-.|+.- |.+.+....+++-++..|=..|...-.+|++++..|.++.
T Consensus 255 i~~l~~EveRlrt~------l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 255 IDKLQAEVERLRTY------LSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34456666666543 3333444556777888888888888889999998888875
No 222
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=40.76 E-value=4.4e+02 Score=27.45 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 012231 35 KRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRF 114 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L 114 (468)
..|..+-.++..+..+|..+...|..... .|+...+|-..+ ..++.-+. . .-.+...+
T Consensus 195 ~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~-~DDI~~~ll~~~----~~~e~lF~-------------~----eL~kf~~~ 252 (339)
T cd09238 195 GTLRSNLEELEALGNERAGIEDMMKALKR-NDNILAKVMATT----GSYDALFK-------------E----ELKKYDSV 252 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcHHHHHHhh----hhhHHHHH-------------H----HHHHHhhH
Confidence 66888888999999999998888855433 345555553221 11111000 0 11346677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 115 QDEIQKLRVQKVQLQCKLKLEAVQFRLC 142 (468)
Q Consensus 115 ~~EIq~MK~qKVqL~KKMKEEsekfR~~ 142 (468)
...|..-......|+..|+.....|...
T Consensus 253 ~~~v~~~~~~Q~~ll~~i~~~n~~f~~~ 280 (339)
T cd09238 253 REAVSKNISSQDDLLSRLRALNEKFSQI 280 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888999999999999998763
No 223
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=40.72 E-value=3e+02 Score=25.41 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 66 DVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQK--PKGDEAAKRFQDEIQKLRVQKVQLQCKLK 133 (468)
Q Consensus 66 ~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k--~ksE~kik~L~~EIq~MK~qKVqL~KKMK 133 (468)
..-..++..+|...+..++.++..|.-..+....-.+.. ..-..--..++.|...+..++-+|.-+|.
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999999999888875554433222222 11222224445555555555555554443
No 224
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.59 E-value=2.3e+02 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 70 QKLKEAHLEKMNALEGQ 86 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~q 86 (468)
.++++.|+..|..|..+
T Consensus 56 ~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 56 RKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555554444444443
No 225
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.95 E-value=3.3e+02 Score=25.81 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 73 KEAHLEKMNALEGQVLELKKKLELQFQFST----QKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFR 140 (468)
Q Consensus 73 keeyrkKL~eLE~ql~eLkkKq~e~~rLlK----~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR 140 (468)
.+.++..-++|..+|..|+...+......+ ....-+++-..|..+...|...-.++|+..++-.++.|
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444333321111 11222333344555566666666666666666665544
No 226
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.79 E-value=2.2e+02 Score=23.72 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSS 63 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss 63 (468)
.|+..|..|..+...|.-.+--+-..|...++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~ 35 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGP 35 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 48888999999999988888777777775433
No 227
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.31 E-value=5.8e+02 Score=28.37 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
|...+.++...+..+..+.+++...|.+
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888887777777777654
No 228
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.09 E-value=3.9e+02 Score=28.47 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcccchHHHHHHHHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKLELQFQF-----STQKPKGDEAAKRFQDEIQKLRVQKVQ 127 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL-----lK~k~ksE~kik~L~~EIq~MK~qKVq 127 (468)
.+++.|-+|+++-|.++.+-.+.+-+--.. +..+.+-|.+.+.|..|+..+.+.|.+
T Consensus 341 e~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~ 402 (406)
T KOG3859|consen 341 EMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTA 402 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776666555544332211 123445566666666666666554443
No 229
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.08 E-value=3.6e+02 Score=25.89 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 012231 28 DDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKG 107 (468)
Q Consensus 28 ~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ks 107 (468)
+....++.++.+++..+..++..-...+.. ....|..++-.+...++.++..|+ ..+..+...-.+-
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~----------g~edLAr~al~~k~~~e~~~~~l~---~~~~~~~~~~~~l 117 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAA----------GREDLAREALQRKADLEEQAERLE---QQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
...|..|...|..|+..+..|+-+..--.-+..--.....=-+.-.-....+-+..|..+++..+
T Consensus 118 ~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~ 182 (221)
T PF04012_consen 118 KEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAE 182 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHH
No 230
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.85 E-value=76 Score=27.57 Aligned_cols=30 Identities=50% Similarity=0.733 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
..|+++|.+|+.++..+..|.+.|...|..
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999998888763
No 231
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=37.46 E-value=9.4e+02 Score=30.25 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 40 LEQENDTLKREIEELRFKVAS--VSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFS 101 (468)
Q Consensus 40 LE~ei~~lq~ERDell~~L~~--~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLl 101 (468)
+..++....++.+.+...|.+ ....+-+...+=+..|..++..+-.++-.+++...++.++.
T Consensus 793 ~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i 856 (1294)
T KOG0962|consen 793 FLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREI 856 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666554 11122222233334444555555555555555555544433
No 232
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.38 E-value=6.3e+02 Score=28.27 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 012231 81 NALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRN 160 (468)
Q Consensus 81 ~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~ 160 (468)
..++.+..+|.+-+.-+.+++-...-.+.-+.+|+.-|.....+...|-++. ...+.-..-+..+|+++.--.
T Consensus 265 sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqw-------ed~R~pll~kkl~Lr~~l~~~ 337 (521)
T KOG1937|consen 265 SQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQW-------EDTRQPLLQKKLQLREELKNL 337 (521)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHhcc
Confidence 3455566666677778888888888888888888888877766665555443 222233333444444433221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012231 161 ------EYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESR 199 (468)
Q Consensus 161 ------q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~r 199 (468)
-+.|.+|+..-+....-..++- .++..|+..|++.
T Consensus 338 e~e~~e~~~IqeleqdL~a~~eei~~~e----el~~~Lrsele~l 378 (521)
T KOG1937|consen 338 ETEDEEIRRIQELEQDLEAVDEEIESNE----ELAEKLRSELEKL 378 (521)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHhcC
Confidence 3455555555444333333333 4566666666654
No 233
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=36.73 E-value=3.9e+02 Score=29.41 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHhc
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ------F----QFSTQ 103 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~------~----rLlK~ 103 (468)
-.-|..|+.++..++.+++.++..+.-.+ .....+ +.++..|+.||..++.+.... + ....+
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~~~~p~s----PqV~~l----~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L 356 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMVNGLDQN----PLIPRL----SAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDL 356 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CchhHH----HHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 35688899999999999888877654322 233333 567889999999888887521 1 11233
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCK 131 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KK 131 (468)
.-..+=.-+.|..=+..|-+.++.=.||
T Consensus 357 ~le~efAe~~y~sAlaaLE~AR~EA~RQ 384 (434)
T PRK15178 357 RLQSEIAKARWESALQTLQQGKLQALRE 384 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444455555555444443
No 234
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.47 E-value=8.1e+02 Score=29.23 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
++.|+-.++.+|.+.....+.||.--++|+..+++
T Consensus 432 LqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~ 466 (861)
T PF15254_consen 432 LQSLNMSLQNQLQESLKSQELLQSKNEELLKVIEN 466 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Confidence 44555555666666655555565555555555543
No 235
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.36 E-value=3.7e+02 Score=26.33 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQ 115 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~ 115 (468)
-...|+..+..++++...+...+..+ +...+..+.+...+|..|+.+-.++-.+.-+ -+..+..|+
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~v----N~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~e----------ie~a~~~Le 202 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEV----NRERKRRQEEAGEELRYLEQRWKELVSKNLE----------IEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 34566666777777777776666543 2333444556667777777776666655544 467888999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012231 116 DEIQKLRVQKVQLQCK 131 (468)
Q Consensus 116 ~EIq~MK~qKVqL~KK 131 (468)
.||..+|+...++..+
T Consensus 203 ~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 203 QEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999988876544
No 236
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=36.30 E-value=1.2e+02 Score=27.94 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC------------ChHHHHHHHHHHHHHHHHHHHHH
Q 012231 20 SLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSST------------PDVAAQKLKEAHLEKMNALEGQV 87 (468)
Q Consensus 20 ~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~------------~~~~~~KLkeeyrkKL~eLE~ql 87 (468)
+.++.+++.+-+..+.+-.+.......++.+..++.....+.... -.+.-+.|-..|..=++.|+.+|
T Consensus 30 ~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I 109 (126)
T PF09403_consen 30 NQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEI 109 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhcc
Q 012231 88 LELKKKLELQFQFSTQK 104 (468)
Q Consensus 88 ~eLkkKq~e~~rLlK~k 104 (468)
.+.++...+...|+..+
T Consensus 110 ~~~e~iI~~fe~i~~~~ 126 (126)
T PF09403_consen 110 AEQEQIIDNFEKIQSLR 126 (126)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
No 237
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.27 E-value=1.4e+02 Score=33.09 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 73 KEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 73 keeyrkKL~eLE~ql~eLkkKq 94 (468)
..+++.+|++|+.++..|+..+
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888877777655
No 238
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.94 E-value=2.2e+02 Score=23.05 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
.+.+|.+||..+.-.+.-+++|-..+. +-.+.|..|+.++..|..+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~---------------~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVT---------------EQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899888887777766655543 2234445555555555555444
No 239
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=35.32 E-value=1.1e+02 Score=28.42 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=48.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcchhHHHhhhh
Q 012231 233 VSSEYERELEE---MAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNK 309 (468)
Q Consensus 233 a~~~LE~llE~---L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~~k~e~~~~~ 309 (468)
-...||.|+|- |..+|..|++.++.+++...- .+.. +.. ...| .+..|..+|.|||..+.-|..++
T Consensus 6 WktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~d-rl~s--iR~------ye~M--s~~~l~~llkqLEkeK~~Le~ql 74 (129)
T PF15372_consen 6 WKTRYETQLELNDQLEKQIIILREKIEKIRGNPSD-RLSS--IRR------YEQM--SVESLNQLLKQLEKEKRSLENQL 74 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-ccHH--HHH------Hhhc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777776 888999999999988876421 0111 000 2233 34678999999999999999998
Q ss_pred hhhhh
Q 012231 310 SEVGQ 314 (468)
Q Consensus 310 k~~~~ 314 (468)
+.-+.
T Consensus 75 k~~e~ 79 (129)
T PF15372_consen 75 KDYEW 79 (129)
T ss_pred HHHHH
Confidence 86543
No 240
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.15 E-value=7.1e+02 Score=28.19 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHH
Q 012231 110 AAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLL 167 (468)
Q Consensus 110 kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kL 167 (468)
.+..++.++..+......|...++.+.-.+-..+...++++.+++.+-......+..+
T Consensus 231 ~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 231 EIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444455555555555555555444443
No 241
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=34.24 E-value=3.6e+02 Score=24.48 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHHH
Q 012231 140 RLCKASLQKEIFQLMKE 156 (468)
Q Consensus 140 R~~k~~reKEI~QLKKe 156 (468)
.-.-..+++||..||..
T Consensus 132 ~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 132 EHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334455555555543
No 242
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.23 E-value=5.8e+02 Score=26.89 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012231 109 EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKE 156 (468)
Q Consensus 109 ~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe 156 (468)
..+..|..++..+..+...|.....++.-....++. +|..|+..
T Consensus 254 ~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~----~i~~l~~~ 297 (444)
T TIGR03017 254 PIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQA----EINSLKSQ 297 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH----HHHHHHHH
Confidence 346677777777777777776666666666665554 44444443
No 243
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.96 E-value=5.5e+02 Score=29.83 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012231 115 QDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMK 155 (468)
Q Consensus 115 ~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKK 155 (468)
..||-..-.--..++++...|..+.-++|+.+-||+..=++
T Consensus 278 ~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r 318 (660)
T KOG4302|consen 278 ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKR 318 (660)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666666666778888888888888888888777765433
No 244
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.78 E-value=7.9e+02 Score=28.31 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 78 kKL~eLE~ql~eLkkKq~e~ 97 (468)
..+.+|+.|+.+|+.+..+.
T Consensus 311 ~~~~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 311 EQIVNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665554443
No 245
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=33.52 E-value=7e+02 Score=27.61 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREI----------------EELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVL 88 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ER----------------Dell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~ 88 (468)
-++.+..|++..|..|.++..-|=.|- +++-.+|+..-+ -+....-|+.+|.--|+.++.+|.
T Consensus 353 kiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqS-vnsdveaLRrQyleelqsvqRELe 431 (593)
T KOG4807|consen 353 KIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQS-VNSDVEALRRQYLEELQSVQRELE 431 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc-cccChHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888776654442 222222322111 112234677889889999999988
Q ss_pred HHH----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 89 ELK----KKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCK 143 (468)
Q Consensus 89 eLk----kKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k 143 (468)
.|- .|.-+...|...-+.....+++-+.|-|.+-+.--.|-.++-+|..+.|-+-
T Consensus 432 VLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtll 490 (593)
T KOG4807|consen 432 VLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLL 490 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 875 4556778888888888999999999999999888888888888877777654
No 246
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.44 E-value=2.8e+02 Score=23.00 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELR-------FKVASVSS-TPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL-QFQ 99 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell-------~~L~~~ss-~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e-~~r 99 (468)
|-..|.-.|..+...+.++..-=..|. ..|..... ......-.+.. |..||..+..++..+..+... +.|
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443333 33332211 00110112323 899999988888888877655 344
Q ss_pred HHh
Q 012231 100 FST 102 (468)
Q Consensus 100 LlK 102 (468)
+.+
T Consensus 87 ~~~ 89 (92)
T PF14712_consen 87 ADK 89 (92)
T ss_pred HHh
Confidence 443
No 247
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.23 E-value=9.5e+02 Score=29.06 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHhcc
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKL-------ELQFQ-FSTQK 104 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq-------~e~~r-LlK~k 104 (468)
....+.+|+.++...+...++...+ .....++++.|+.++-.|+.++.+|+..- ..... ..++.
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~--------~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~ 543 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYE--------KAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLG 543 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHh--------hhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhh
Confidence 4555555555555555555544433 34567888999999888888877765433 22222 55677
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 012231 105 PKGDEAAKRFQDEIQKLRV 123 (468)
Q Consensus 105 ~ksE~kik~L~~EIq~MK~ 123 (468)
+-..++++.|+.+|..+|.
T Consensus 544 eer~qklk~le~q~s~lkk 562 (913)
T KOG0244|consen 544 EERVQKLKSLETQISLLKK 562 (913)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888775
No 248
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.43 E-value=3.8e+02 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFK 57 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~ 57 (468)
+.....++.-|+..+..+...+++|..+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4556777888888877777777777533
No 249
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.42 E-value=9.8e+02 Score=28.97 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAV 137 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEse 137 (468)
+.+...+-.|+.+.+.+=-.+.++.++++-
T Consensus 182 ~~q~~tkl~e~~~en~~le~k~~k~~e~~~ 211 (1265)
T KOG0976|consen 182 NMEFQTKLAEANREKKALEEKLEKFKEDLI 211 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666777777777777777777654
No 250
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=32.20 E-value=14 Score=42.19 Aligned_cols=59 Identities=29% Similarity=0.676 Sum_probs=35.2
Q ss_pred ccccCCCCccccCccccccCCCCCCCC----cc-cC-----CcccCCCCCCCccccc----ccchhhhhHHHhhh
Q 012231 353 CCSCSKKSSCKTSKCECRVSGGSCGTS----CG-CA-----ANKCTNRELGSVETEM----TSSLTSEGAMLLQN 413 (468)
Q Consensus 353 cc~csk~s~ckt~~c~c~~~~~~c~~~----c~-c~-----~~kc~n~~~~~~~~~~----~~~~~s~~a~llq~ 413 (468)
+|-| ++-|-|++|+|..++--|.|- || |. -..|.|-....-..+- ....|..|+.|..+
T Consensus 541 GC~C--k~QC~tkqCpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~ 613 (739)
T KOG1079|consen 541 GCRC--KAQCNTKQCPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKES 613 (739)
T ss_pred CCCc--ccccccCcCchhhhccccCchHHhccCcccccccCccccccchhhhhhhcceeechhhccccceeeccc
Confidence 4556 678999999999999999963 44 22 2356665532211111 33455566655443
No 251
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.12 E-value=3.9e+02 Score=24.27 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012231 159 RNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKEL 195 (468)
Q Consensus 159 K~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~l 195 (468)
.-..++..|+..|.-=-.+|--|+|++.-++-.+.++
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3345566777777777778888999998888766554
No 252
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.81 E-value=5.2e+02 Score=25.56 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 012231 81 NALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQK---VQLQCKLKLEAVQFRL 141 (468)
Q Consensus 81 ~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qK---VqL~KKMKEEsekfR~ 141 (468)
..|+.++..|+..... +.+.-...+..+..|+..|..+...+ +-+|.+|-.+.+.|-.
T Consensus 59 ~~l~~e~e~L~~~~~~---l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQ---LERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555543333 33333344555556666555555544 4467788888887766
No 253
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=9.1e+02 Score=28.35 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=56.6
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 10 QTSAVDSSSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLE 89 (468)
Q Consensus 10 ~~~~~~~~~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~e 89 (468)
.+++|-+++-.....-+......|+.-..+.+..+.+... +..+-.++..+.++-.+..+-+ .+|.+++.+.+..+..
T Consensus 220 ~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-~~~in~e~~~L~Ssl~e~~~~l-~~~~~~~k~t~~~~~~ 297 (698)
T KOG0978|consen 220 SDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-FSSINREMRHLISSLQEHEKLL-KEYERELKDTESDNLK 297 (698)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchHHH
Confidence 3455555553333334444444454444444443333332 2222223322222222333444 4488888888888888
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 90 LKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKL 134 (468)
Q Consensus 90 LkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKE 134 (468)
|+.....-.--.-. .-.....|..+++....+-..|.+.+.+
T Consensus 298 lr~~~~s~~~~~~~---~~~~~e~l~~~~~~~~~~~~~~~~~~~~ 339 (698)
T KOG0978|consen 298 LRKQHSSAADSLES---KSRDLESLLDKIQDLISQEAELSKKLRS 339 (698)
T ss_pred HHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665432211111 2334445556666665555555554433
No 254
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=31.39 E-value=4.4e+02 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 109 EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKA 144 (468)
Q Consensus 109 ~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~ 144 (468)
..++.|..|+..+..-|..|.+.+...-++-..++.
T Consensus 66 ~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 66 SELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766666555555544
No 255
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.31 E-value=6.6e+02 Score=27.54 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRF 56 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~ 56 (468)
...+.+|+.+|..++.++..+..
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLED 92 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554443
No 256
>PRK09343 prefoldin subunit beta; Provisional
Probab=31.30 E-value=3.9e+02 Score=23.94 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhcc
Q 012231 33 YEKRVHELEQENDTLKREIEE---LRFKVASV 61 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDe---ll~~L~~~ 61 (468)
+..+|..+-..+..++.++.+ ++.+|..+
T Consensus 19 lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L 50 (121)
T PRK09343 19 LQQQLERLLQQKSQIDLELREINKALEELEKL 50 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555555555555555555 34445443
No 257
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.20 E-value=2.2e+02 Score=31.72 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFK 57 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~ 57 (468)
+..+-|..|-.+.++++.+...|+.+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~ 81 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISE 81 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665543
No 258
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=30.97 E-value=5.4e+02 Score=25.50 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAK 112 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik 112 (468)
--..|..|-.++..+..+|..++..|.. ....+....-| ..|.+.-. ......-...-.+..
T Consensus 142 ~i~~L~~ll~~l~~l~~eR~~~~~~lk~-~~~~d~i~~~l-~~~~~~~~----------------~~~~~lf~~eL~k~~ 203 (296)
T PF13949_consen 142 VIRQLRELLNKLEELKKEREELLEQLKE-KLQNDDISKLL-SELNKNGS----------------ADFEALFEEELKKFD 203 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHSSS------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHH-HHhhccCC----------------ccHHHHHHHHHHHHH
Confidence 3456888888999999999999999886 23333333333 33332110 011112222233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012231 113 RFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRL 192 (468)
Q Consensus 113 ~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRL 192 (468)
.+...|+........|+..|.+..++|..... .......++.-+..|...+..=.. |....+|-..|=..|
T Consensus 204 ~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~--------~~~~~~~r~~~~~~l~~a~~~y~e-l~~~l~eG~~FY~~L 274 (296)
T PF13949_consen 204 PLQNRIQQNLSKQEELLQEIQEANEEFAQSRK--------SDQEQKERESALQRLEAAYDAYKE-LSSNLEEGLKFYNDL 274 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 67788888889999999999999998844431 111224455556666666655544 335555554444433
No 259
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.87 E-value=8.9e+02 Score=28.00 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=62.7
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccCCCChHHHHHHHHHHHHHHHHHHH
Q 012231 13 AVDSSSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEEL-------RFKVASVSSTPDVAAQKLKEAHLEKMNALEG 85 (468)
Q Consensus 13 ~~~~~~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDel-------l~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ 85 (468)
..|.|+++.+...+..+-+.+......+-.+-..+.+|...+ +..+....+.+ ....-+ .-+..+--+..
T Consensus 289 l~d~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~-s~~~al--~~ele~~~l~A 365 (632)
T PF14817_consen 289 LEDVSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGS-SEREAL--ALELEVAGLKA 365 (632)
T ss_pred cCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-chhhHH--HHHHHHHHHHH
Confidence 567777777777777777666666555555554544444443 33333221111 111111 22234445555
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 86 QVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKL 134 (468)
Q Consensus 86 ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKE 134 (468)
.+..|........++...+......+.....+|.+.+...++.+.+++.
T Consensus 366 ~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~ 414 (632)
T PF14817_consen 366 SLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRA 414 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555666666666666555555555543
No 260
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.84 E-value=1.5e+02 Score=23.40 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
.+....+..|+.++..++.+.+.|-..+...
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778899999999999999998888765
No 261
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=30.78 E-value=5.5e+02 Score=25.55 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------C---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 012231 37 VHELEQENDTLKREIEELRFKVASV-------S---STPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPK 106 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~-------s---s~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~k 106 (468)
|.-|..++++.+.|...-.+++-+. . ...+.....+...++.|-.+|+.--.+|+++..+..-|.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr----- 86 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR----- 86 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh-----
Confidence 5556666666666655443333211 0 012344455555566665666655556665555543332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012231 107 GDEAAKRFQDEIQKLRVQKVQL 128 (468)
Q Consensus 107 sE~kik~L~~EIq~MK~qKVqL 128 (468)
.++..|..||..|+..-+.+
T Consensus 87 --ekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 87 --EKLGQLEAELAELREELACA 106 (202)
T ss_pred --hhhhhhHHHHHHHHHHHHhh
Confidence 33555666666665554443
No 262
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.58 E-value=2.6e+02 Score=29.85 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFS 101 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLl 101 (468)
..-+..|+.++..++.+++++-..|+... ....++.+++.++..+.+...+...+.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~------------k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP------------KKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888877776421 223555566666666666555555443
No 263
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=30.52 E-value=7.9e+02 Score=27.28 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=66.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 20 SLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 20 ~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
++..+|...-..+-+--+..|..+...+..|++.--+=+.-.... .+.. +|...+ .+++.-..+-.+
T Consensus 128 ~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~-----~~~~-~~~~~~-------~e~~~l~~eE~~ 194 (447)
T KOG2751|consen 128 SQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQ-----NQDV-SEEDLL-------KELKNLKEEEER 194 (447)
T ss_pred ccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----Cccc-chHHHH-------HHHHHHHHHHHH
Confidence 455556666666666777777777777777777643322211111 0100 222222 222223333444
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 100 FSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 100 LlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
|..+....+++=..|..++.+....+++|-.++-+=...|....- +.---+.+++.|+++.+
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~-----------q~~~~~del~Sle~q~~ 256 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQR-----------QLIEHQDELDSLEAQIE 256 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhcccchHHHHHHHHH
Confidence 444455555555566667777777777666665554444444332 44444555666665544
No 264
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.40 E-value=1.1e+03 Score=28.72 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----------CChHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSS----------TPDVAAQKLKEAHLEKMNALEGQVLE 89 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss----------~~~~~~~KLkeeyrkKL~eLE~ql~e 89 (468)
+-|+..+.+-+.+++.+-.+..++.++|..... .+......+..+|.+++.+...+-..
T Consensus 130 ~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~ 198 (1265)
T KOG0976|consen 130 QGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKA 198 (1265)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444444432110 12233445566676666654443333
No 265
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.30 E-value=5.2e+02 Score=25.17 Aligned_cols=6 Identities=17% Similarity=0.147 Sum_probs=2.3
Q ss_pred HHHHHH
Q 012231 29 DKEHYE 34 (468)
Q Consensus 29 mk~qYE 34 (468)
++.-|.
T Consensus 58 l~~a~~ 63 (236)
T cd07651 58 LKNSLD 63 (236)
T ss_pred HHHHHH
Confidence 333333
No 266
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=30.27 E-value=7e+02 Score=26.64 Aligned_cols=21 Identities=5% Similarity=0.229 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 012231 106 KGDEAAKRFQDEIQKLRVQKV 126 (468)
Q Consensus 106 ksE~kik~L~~EIq~MK~qKV 126 (468)
.....+..+..++..+|.+-.
T Consensus 298 ~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556655555433
No 267
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=29.91 E-value=4.3e+02 Score=24.06 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 67 VAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFS--TQKPKGDEA-AKRFQDEIQKLRVQKVQLQCKLKLEAVQFR 140 (468)
Q Consensus 67 ~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLl--K~k~ksE~k-ik~L~~EIq~MK~qKVqL~KKMKEEsekfR 140 (468)
.....+..+|+..|.....+-..+.....+..+-. +..+..... -..+..-...+..++.++...|+.+..-|.
T Consensus 55 ~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~ 131 (141)
T PRK08476 55 SDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFK 131 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45567778888888888877666655443332211 111111111 122233344455555666666666555554
No 268
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.76 E-value=5.9e+02 Score=25.59 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 47 LKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFST 102 (468)
Q Consensus 47 lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK 102 (468)
..++.+.+-..+.+.+. -.++..++.++-.+--.++++...+|.+.+.+-..|.|
T Consensus 132 ~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 132 AMKENEALKKQLENSSK-LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred HHHHHHHHHHhhhcccc-hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555555554221 12223333333333333344444444444444333333
No 269
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=29.60 E-value=6.1e+02 Score=25.68 Aligned_cols=19 Identities=0% Similarity=-0.069 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 012231 137 VQFRLCKASLQKEIFQLMK 155 (468)
Q Consensus 137 ekfR~~k~~reKEI~QLKK 155 (468)
++|..|-..+.++..+.+.
T Consensus 133 ~~y~eWl~~K~~q~~~~~~ 151 (264)
T PF13904_consen 133 EKYQEWLQRKEEQERKQRE 151 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444443
No 270
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=29.52 E-value=3.7e+02 Score=28.61 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----CChH--HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSS-----TPDV--AA---QKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss-----~~~~--~~---~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
-+.+++ .|..++.+|.++.+.|+.|..++-..-.-++. ..|+ .. +.--++++ -|+.+++.|+-|+
T Consensus 57 aaNavr-dYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR----~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 57 AANAVR-DYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERR----FLQGEMQQLRDKL 131 (351)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHH----HHHHHHHHHHHHH
Confidence 334444 59999999999999999999887533221111 1222 11 22223332 3889999999888
Q ss_pred HHHHHHHh
Q 012231 95 ELQFQFST 102 (468)
Q Consensus 95 ~e~~rLlK 102 (468)
.-..|-.+
T Consensus 132 AiaERtAk 139 (351)
T PF07058_consen 132 AIAERTAK 139 (351)
T ss_pred HHHHHHHH
Confidence 76666544
No 271
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.51 E-value=3.8e+02 Score=24.37 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 012231 39 ELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEI 118 (468)
Q Consensus 39 eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EI 118 (468)
.|-.+...+..+.+++...+... .+.....+--.-+|+.+|...+..|. ..+..|+++|
T Consensus 5 ~~~~q~~~l~~~v~~lRed~r~S----Edrsa~SRa~mhrRlDElV~Rv~~lE-----------------s~~~~lk~dV 63 (112)
T PF07439_consen 5 GLHQQLGTLNAEVKELREDIRRS----EDRSAASRASMHRRLDELVERVTTLE-----------------SSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHhHHHHHHHHHHHH-----------------HHHHHHHhhH
Confidence 34455556666666666555421 23333344444678888888887773 6677888888
Q ss_pred HHHHHHHH
Q 012231 119 QKLRVQKV 126 (468)
Q Consensus 119 q~MK~qKV 126 (468)
..||.-=.
T Consensus 64 semKpVT~ 71 (112)
T PF07439_consen 64 SEMKPVTD 71 (112)
T ss_pred HhccchHH
Confidence 88886433
No 272
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.44 E-value=2.2e+02 Score=27.89 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
...|+.++..|...+..++.|+..|-..|.
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356888888888888888888888877765
No 273
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.43 E-value=3.8e+02 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012231 110 AAKRFQDEIQKLRVQKVQLQC 130 (468)
Q Consensus 110 kik~L~~EIq~MK~qKVqL~K 130 (468)
.+..|+..|..+...|-.|++
T Consensus 64 E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 64 ENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655555553
No 274
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=29.30 E-value=6.7e+02 Score=26.09 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc--ccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcchh
Q 012231 227 TVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEE--NSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPK 302 (468)
Q Consensus 227 ~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~--~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~~k 302 (468)
+....++=..+...|+.|.+.+..|+.+-..++.. ++--.|-+-...=...+-++.-++-++..|.+|.+.|..++
T Consensus 232 L~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 232 LNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34578888899999999999999998776655533 11001111000011234567888889999999999887654
No 275
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.28 E-value=4.2e+02 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKV 58 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L 58 (468)
...-++|...+..|...+..+...+.++...+
T Consensus 12 ~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 12 AAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888887777777665443
No 276
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.17 E-value=4.9e+02 Score=24.43 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 012231 72 LKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRF 114 (468)
Q Consensus 72 LkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L 114 (468)
++..|.+.-.+++.++..++.--.=-.-|.....+....|..|
T Consensus 63 lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~av~al 105 (155)
T PF06810_consen 63 LQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKAVKAL 105 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHh
Confidence 3334444444677777766665544455555566655555443
No 277
>PF12669 P12: Virus attachment protein p12 family
Probab=29.13 E-value=45 Score=26.48 Aligned_cols=12 Identities=58% Similarity=1.495 Sum_probs=8.6
Q ss_pred CcccccCCCCcc
Q 012231 351 GVCCSCSKKSSC 362 (468)
Q Consensus 351 ~~cc~csk~s~c 362 (468)
+.||+||..|.|
T Consensus 28 ~~c~gCs~~sgC 39 (58)
T PF12669_consen 28 GCCCGCSGCSGC 39 (58)
T ss_pred CCCCCCCCCCCc
Confidence 367888776666
No 278
>PRK11415 hypothetical protein; Provisional
Probab=29.09 E-value=80 Score=26.14 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 012231 115 QDEIQKLRVQKVQLQ 129 (468)
Q Consensus 115 ~~EIq~MK~qKVqL~ 129 (468)
..+|..||.+|..|-
T Consensus 45 d~~i~~LKk~KL~LK 59 (74)
T PRK11415 45 NAEVVRMKKQKLQLK 59 (74)
T ss_pred HHHHHHHHHHHHHhH
Confidence 467999999998763
No 279
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=28.97 E-value=6.9e+02 Score=26.11 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKKKLEL-QFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKE 156 (468)
Q Consensus 78 kKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe 156 (468)
.++..|+...+.|+-.+.. ..++.-...+.-+++..|+.++...+++|.+|.+.||+=-.....++..+---|.-|--=
T Consensus 59 trnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDf 138 (333)
T KOG1853|consen 59 TRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDF 138 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHH
Confidence 3444444444444433322 234444555667789999999999999999999999986666666655544444445444
Q ss_pred HHhhHHHHH
Q 012231 157 NRRNEYELH 165 (468)
Q Consensus 157 ~RK~q~ei~ 165 (468)
..|-.+.|-
T Consensus 139 eqrLnqAIE 147 (333)
T KOG1853|consen 139 EQRLNQAIE 147 (333)
T ss_pred HHHHHHHHH
Confidence 444444443
No 280
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.97 E-value=7e+02 Score=26.21 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAA 111 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~ki 111 (468)
.++.++..|...+..+...|+++...+. .|+.+-.+|..++.+|..+.+++. .+-
T Consensus 10 E~e~K~~~lk~~~~e~~ekR~El~~~~~---------------~~~ekRdeln~kvrE~~e~~~elr----------~~r 64 (294)
T COG1340 10 ELELKRKQLKEEIEELKEKRDELRKEAS---------------ELAEKRDELNAKVRELREKAQELR----------EER 64 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 3444444555555555555555554433 333333344444444443333332 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhhHHHHHH
Q 012231 112 KRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQ------KEIFQLMKENRRNEYELHL 166 (468)
Q Consensus 112 k~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~re------KEI~QLKKe~RK~q~ei~k 166 (468)
..+..+|+.+|.-+-.+..++.+=-..|+....... +.+..|+++-++-++....
T Consensus 65 deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T 125 (294)
T COG1340 65 DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 344555566665555555555543333333333322 3444555554444444333
No 281
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.80 E-value=9.4e+02 Score=27.65 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012231 40 LEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKP 105 (468)
Q Consensus 40 LE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ 105 (468)
|+.++..|++|++.|-..+...- ........+-.+.+.+|.+|+..+..+.....+..+|+..-+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv-~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lq 149 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQV-ENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQ 149 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444444444444443332210 012344566677788888888888888877777777665443
No 282
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=28.56 E-value=4.6e+02 Score=24.01 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELK 91 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLk 91 (468)
=...|+..+.+|-.-|-...+.+|.|+..|-+.....+++. ++|.+|+.++....
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~--------~~i~~L~~E~~~~~ 117 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQL--------KRIKELEEENEEAE 117 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHH--------HHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH--------HHHHHHHHHHHHHH
Confidence 36789999999999999999999999999987655433333 34445555544433
No 283
>PF13166 AAA_13: AAA domain
Probab=28.18 E-value=9e+02 Score=27.21 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=35.5
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 26 AVDDKEHYEK----RVHELEQENDTLKREIEELRFKVASVSSTP--DVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 26 ~q~mk~qYEk----KL~eLE~ei~~lq~ERDell~~L~~~ss~~--~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
.+.+..+|.. .+..|+..+..+....+.++..+....... ......-.+++...+..+...|..+...+..
T Consensus 271 ~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 271 KERLEKYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444 444555555566666666655554332110 0111222456666666666666655555443
No 284
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.10 E-value=2.2e+02 Score=22.69 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEE--LRFKVASVSST--PDVAAQKLKEAHLEKMNALEGQVLELK 91 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDe--ll~~L~~~ss~--~~~~~~KLkeeyrkKL~eLE~ql~eLk 91 (468)
|.+.-...++++|..++.+|..++.-... .+.. ++. -+....++ .+|...+..|+..|..|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~k----AP~eVve~er~kl-~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEK----APEEVVEKEREKL-EELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHH----S-CCHHHHHHHHH-HHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc----CCHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 34455667788888888888887765542 2222 221 12334455 788888888888887764
No 285
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.96 E-value=8.8e+02 Score=27.06 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=21.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012231 158 RRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRK 200 (468)
Q Consensus 158 RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk 200 (468)
.++...+.+.+..-..+..-|..+.+++......+..+...+.
T Consensus 93 ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~ 135 (514)
T TIGR03319 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR 135 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555566666555555555444443
No 286
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=27.90 E-value=26 Score=37.88 Aligned_cols=65 Identities=32% Similarity=0.543 Sum_probs=42.9
Q ss_pred CCcccccCCCCccccCccccccCCCCCCCCcccCCcccCCCCCCCcccccccchhhhhHHHhhhhhhcCCccc
Q 012231 350 SGVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNRELGSVETEMTSSLTSEGAMLLQNSLIEKPLET 422 (468)
Q Consensus 350 ~~~cc~csk~s~ckt~~c~c~~~~~~c~~~c~c~~~kc~n~~~~~~~~~~~~~~~s~~a~llq~a~~~~~~~~ 422 (468)
..-+|.|. .|-|---+|.|-|+|.+|.--|.|. .|.|... .+.....|...+ |=.|-++-||.-.
T Consensus 130 ~k~~~~ck-~SkclklYCeCFAsG~yC~~~CnCv--nC~N~~~----~e~~r~~a~k~~-l~RNP~AFkPKia 194 (406)
T KOG1171|consen 130 SKKKCNCK-KSKCLKLYCECFASGVYCTGPCNCV--NCFNNPE----HESVRLKARKQI-LERNPNAFKPKIA 194 (406)
T ss_pred CccCCCch-HHHHHHHhHHHHhhcccccCCccee--eccCCCc----chHHHHHHHHHH-hhcCccccccccc
Confidence 33677754 4677778999999999999989999 9999953 333333333222 3344455556555
No 287
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.53 E-value=3.3e+02 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 73 KEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 73 keeyrkKL~eLE~ql~eLkkKq 94 (468)
+..|..+|..+..++..|++..
T Consensus 56 r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 56 RNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666544
No 288
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.15 E-value=4.2e+02 Score=23.02 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 107 GDEAAKRFQDEIQKLRVQKVQLQC 130 (468)
Q Consensus 107 sE~kik~L~~EIq~MK~qKVqL~K 130 (468)
.+..|..|..+|..|+....+|..
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 289
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=27.06 E-value=6.2e+02 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 117 EIQKLRVQKVQLQCKLKLEAVQFRLCKAS 145 (468)
Q Consensus 117 EIq~MK~qKVqL~KKMKEEsekfR~~k~~ 145 (468)
.++.|...|.+|.+++.++.+.|+.++..
T Consensus 132 ~~~el~~ek~kL~~q~~e~~e~lr~L~~~ 160 (221)
T PF10376_consen 132 KQQELEEEKRKLEKQVDEKEEELRRLKLV 160 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46778888899999999999999999874
No 290
>PRK10780 periplasmic chaperone; Provisional
Probab=27.05 E-value=5.1e+02 Score=24.02 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
.+..+...++.....++.++..++.|.......+...
T Consensus 40 ~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 40 QRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888888888888888888888888777643
No 291
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=27.02 E-value=7.3e+02 Score=25.80 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=58.8
Q ss_pred cccchHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012231 103 QKPKGDEAAKRFQD-------EIQKLRVQKVQLQCKLKLEAVQFRLCKAS---LQKEIFQLMKENRRNEYELHLLSALNQ 172 (468)
Q Consensus 103 ~k~ksE~kik~L~~-------EIq~MK~qKVqL~KKMKEEsekfR~~k~~---reKEI~QLKKe~RK~q~ei~kLe~~~~ 172 (468)
.......+...+.. .|..|..+=+.|-.++--=+++|.++... -+-=....|+++-+.-..|.+|+-.+
T Consensus 182 ~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~- 260 (309)
T PF09728_consen 182 EAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN- 260 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33445566677777 99999999999999999999999998864 22334566777777777777776544
Q ss_pred HHHHHHHHHhHHHHHH
Q 012231 173 RLKLVLQRKTKEAFEA 188 (468)
Q Consensus 173 kQ~~VLKRKtEEaaAa 188 (468)
..+++|.|....+
T Consensus 261 ---~~~k~k~e~~n~~ 273 (309)
T PF09728_consen 261 ---QTWKSKWEKSNKA 273 (309)
T ss_pred ---HHHHHHHHHHhHH
Confidence 4577777765543
No 292
>PRK06798 fliD flagellar capping protein; Validated
Probab=26.33 E-value=2.8e+02 Score=30.22 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
+..+.|.++...|+.-|..|+....-...+
T Consensus 404 ~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 404 QKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666555443333
No 293
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.29 E-value=4.2e+02 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELR 55 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell 55 (468)
.....++|+..|..|...+..+.....++.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~ 33 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYE 33 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888877666654
No 294
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=26.18 E-value=7.5e+02 Score=25.66 Aligned_cols=135 Identities=11% Similarity=0.145 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKR 113 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~ 113 (468)
-..|..|-.++..+..+|..++..|..... .++...+|-..|.. . + ..+-...-.+...
T Consensus 190 v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~-~DDI~~~ll~~~~~---~----~-------------e~lf~~eL~k~~~ 248 (337)
T cd09234 190 EKELKRILNKVNEMRKQRRSLEQQLRDAIH-EDDITSKLVTTTGG---D----M-------------EDLFKEELKKHDQ 248 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchHHHHHhcch---h----H-------------HHHHHHHHHHhhh
Confidence 566899999999999999999999975433 35556666444421 1 1 1111122233667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012231 114 FQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLK 193 (468)
Q Consensus 114 L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK 193 (468)
+...|.......-.|++.|++-...|...... . ..-.++++..+..|.+.+..=.- |.-+.++...|=.-|.
T Consensus 249 ~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~-----~--~~~~~~Re~~l~~L~~ay~~y~e-l~~~l~eG~~FY~dL~ 320 (337)
T cd09234 249 LVNLIEQNLAAQENILKALTEANAKYAPVRKA-----L--SETKQKRESTISSLIASYEAYED-LLKKSQKGIDFYKKLE 320 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----h--hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 77888888888999999999999998633221 1 33477888999999999988877 5688888888877776
Q ss_pred HHHH
Q 012231 194 ELLE 197 (468)
Q Consensus 194 ~lL~ 197 (468)
..+.
T Consensus 321 ~~v~ 324 (337)
T cd09234 321 GNVS 324 (337)
T ss_pred HHHH
Confidence 5544
No 295
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.97 E-value=4.8e+02 Score=26.46 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 012231 131 KLKLEAVQFRLCK 143 (468)
Q Consensus 131 KMKEEsekfR~~k 143 (468)
.+|...++++.|.
T Consensus 135 evK~~~E~y~k~~ 147 (230)
T PF03904_consen 135 EVKQSHEKYQKRQ 147 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 296
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.87 E-value=4.9e+02 Score=28.14 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
...+..+|..++..|+.||..+-.++.
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666655554
No 297
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.85 E-value=6.8e+02 Score=25.03 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 75 AHLEKMNALEGQVLELKKKLELQFQFST 102 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e~~rLlK 102 (468)
-+..|..+||..|..|..+..|-.-+++
T Consensus 133 ~a~~K~qemE~RIK~LhaqI~EKDAmIk 160 (205)
T PF12240_consen 133 MANRKCQEMENRIKALHAQIAEKDAMIK 160 (205)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888777554444
No 298
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.71 E-value=6.8e+02 Score=25.01 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHH
Q 012231 68 AAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQ-LQCKLKLEAV--QFRLCKA 144 (468)
Q Consensus 68 ~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVq-L~KKMKEEse--kfR~~k~ 144 (468)
.....-.+++-++=.||..+.....|.-+-..|.----..- ..-.+++.. ++.-...++. .|
T Consensus 61 ~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAa----------a~aa~~rdttiI~~s~~~s~~~s~----- 125 (205)
T PF12240_consen 61 NLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAA----------ATAAAQRDTTIINHSPSESYNSSL----- 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHhcCCCCCCCccc-----
Confidence 34444478888899999999999888876554432211111 112222222 4544444444 12
Q ss_pred HhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 012231 145 SLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQ 179 (468)
Q Consensus 145 ~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLK 179 (468)
..+-+|..-...-.-.++.|+-|.++-..++.|++
T Consensus 126 r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIk 160 (205)
T PF12240_consen 126 REEEELHMANRKCQEMENRIKALHAQIAEKDAMIK 160 (205)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777788889999999888888774
No 299
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=3.8e+02 Score=27.80 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFE 187 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaA 187 (468)
--.|..|..||..||.. ..+..+.-..+++.|..||-. .+|. ..|+..|...-.-|++|.+|+.-
T Consensus 224 ~V~i~~lkeeia~Lkk~-----------L~qkdq~ileKdkqisnLKad---~e~~-~~~ek~Hke~v~qL~~k~~~~lk 288 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKL-----------LHQKDQLILEKDKQISNLKAD---KEYQ-KELEKKHKERVQQLQKKKEESLK 288 (305)
T ss_pred HHHHHHHHHHHHHHHHH-----------HhhhHHHHHhhhhhhhccCcc---hhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888877741 112233344566777777765 3333 56777777766668888887644
Q ss_pred H
Q 012231 188 A 188 (468)
Q Consensus 188 a 188 (468)
+
T Consensus 289 ~ 289 (305)
T KOG3990|consen 289 A 289 (305)
T ss_pred H
Confidence 3
No 300
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.49 E-value=1.3e+03 Score=28.36 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKL----ELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKL 132 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq----~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKM 132 (468)
+.....+.+|+..|..|.... .+...+.+.+.+-+-+|+.|+.+|..=..++-...+.+
T Consensus 268 ~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l 330 (1200)
T KOG0964|consen 268 EDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL 330 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH
Confidence 444566666776666666521 33455666777778889999999988888877655544
No 301
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.47 E-value=7.6e+02 Score=25.44 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 012231 72 LKEAHLEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDEAAKRFQDEIQKLRVQK 125 (468)
Q Consensus 72 LkeeyrkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~kik~L~~EIq~MK~qK 125 (468)
|.--+..+|..++.+|.+...+... .+.|..+-..-+.+|...+.|+.-|...+
T Consensus 57 le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk 111 (258)
T PF15397_consen 57 LEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK 111 (258)
T ss_pred HHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333455667777777776666543 45566666666666666666666666554
No 302
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=25.21 E-value=4.1e+02 Score=22.29 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 39 ELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 39 eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
+|..++..+..+.+.++..+.+.. .+....+++.....+..+...+.+......+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~---~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 56 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA---GEKADEARDRAEEALDDARDRAEDAADQARE 56 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888887766432 3566677777777777777776666554433
No 303
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.19 E-value=1.3e+03 Score=28.19 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 012231 20 SLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL--Q 97 (468)
Q Consensus 20 ~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e--~ 97 (468)
+..+..++.+....-.++.+|... .+.|.-++..+ ...++++.|...+..++..|++-..+ .
T Consensus 1014 s~~e~~~~~~~~d~~~r~~el~~r---q~~el~~~~~~-------------~~~~e~e~k~~hl~~~~~~l~kl~~eaq~ 1077 (1189)
T KOG1265|consen 1014 SGGESTPAALNSDNAGRVRELVNR---QTQELLEMRRE-------------QYEEEFELKEEHLKEQISLLRKLLSEAQT 1077 (1189)
T ss_pred CCCCCchhhccchhhhhHHHHHHH---HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666677776654 22222222221 23466777788888888888887755 5
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 98 FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQ 138 (468)
Q Consensus 98 ~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsek 138 (468)
.++..++...|..-+.|..-+..-....++--+.||.-+++
T Consensus 1078 ~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~ 1118 (1189)
T KOG1265|consen 1078 NQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAER 1118 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHH
Confidence 66777777777777777665555444444434444444443
No 304
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.84 E-value=9.1e+02 Score=26.15 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 012231 166 LLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQ-VQKVSSEYERELEEM 244 (468)
Q Consensus 166 kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~-~~Ea~~~LE~llE~L 244 (468)
.|+.+-+.=..--.-|.||+..+++-|.+++..+.....-... ..+ +. ++ ++. -...+..||.-.+||
T Consensus 145 ~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa--tf~-eq-----~~---ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 145 CLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA--TFV-EQ-----HS---MLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc-cc-----hh---hhHHHHHHHHHHHHHHHHH
Confidence 3333333333345678999999999999988877753211110 000 00 11 222 234567788888898
Q ss_pred HHHHHHHHH
Q 012231 245 AGVINKLKL 253 (468)
Q Consensus 245 ~~E~~~Lk~ 253 (468)
..|+..|=+
T Consensus 214 m~EirnLLQ 222 (401)
T PF06785_consen 214 MYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHH
Confidence 888888744
No 305
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=24.69 E-value=2.8e+02 Score=26.07 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFKVASVSSTP--DVAAQKLKEAHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~ss~~--~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~ 95 (468)
+..|+.|+..|..+|-++...+....+.+ ++++. - ...+.++..++..|..|...+.
T Consensus 13 ~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENae-y-~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 13 RDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAE-A-IQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhh-H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888876663211111 11110 0 1223455667777777765554
No 306
>PRK11281 hypothetical protein; Provisional
Probab=24.64 E-value=1.4e+03 Score=28.27 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDEAAKRF 114 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~kik~L 114 (468)
+-+++|.+++.++++.+....+ .+++..+...-+..-..+
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~l 165 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAL 165 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3567777777777777766655 344444444444433333
No 307
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.60 E-value=3.3e+02 Score=26.26 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALE 84 (468)
Q Consensus 71 KLkeeyrkKL~eLE 84 (468)
.+.++|+.=+.-|+
T Consensus 136 ~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 136 TIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 308
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.55 E-value=3.8e+02 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEE 53 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDe 53 (468)
..+|+.+-+++|.-...
T Consensus 6 W~eL~~efq~Lqethr~ 22 (330)
T PF07851_consen 6 WEELQKEFQELQETHRS 22 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 309
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.44 E-value=4.2e+02 Score=28.59 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDV---AAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~---~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
+..+..+|..++..|+.||..+-.++........+ ....--.+-..++.+|+.++.++..+..+.
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 310
>PF02067 Metallothio_5: Metallothionein family 5; InterPro: IPR000966 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ] species, including sea urchins, fungi, insects and cyanobacteria. Class III MTs are atypical polypeptides composed of gamma-glutamylcysteinyl units. This original classification system has been found to be limited, in the sense that it does not allow clear differentiation of patterns of structural similarities, either between or within classes. Consequently, all class I and class I MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. Diptera (Drosophila, family 5) MTs are 40-43 residue proteins that contain 10 conserved cysteines arranged in five Cys-X-Cys groups. In particular, the consensus pattern C-G-x(2)-C-x-C-x(2)-Q-x(5)-C-x-C-x(2)-D-C-x-C has been found to be diagnostic of family 5 MTs. The protein is found primarily in the alimentary canal, and its induction is stimulated by ingestion of cadmium or copper []. Mercury, silver and zinc induce the protein to a lesser extent. Family 5 includes subfamilies: d1, d2. Only one d2 is known until now. Subfamilies hit the same entry.; GO: 0046872 metal ion binding
Probab=24.43 E-value=43 Score=25.33 Aligned_cols=8 Identities=50% Similarity=1.709 Sum_probs=4.5
Q ss_pred CCCCcccC
Q 012231 376 CGTSCGCA 383 (468)
Q Consensus 376 c~~~c~c~ 383 (468)
||.+|+|.
T Consensus 17 cg~~C~C~ 24 (41)
T PF02067_consen 17 CGGNCACN 24 (41)
T ss_pred cCCCccCC
Confidence 55555554
No 311
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.23 E-value=1.3e+02 Score=22.77 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=26.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 21 LSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 21 ~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
+.+.||..|+..|+. |..+...|..|.+.|.+++..
T Consensus 2 QlE~Dy~~LK~~yd~----Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 2 QLERDYDALKASYDS----LKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999964 666777777777777766653
No 312
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.14 E-value=6.5e+02 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLEL 90 (468)
Q Consensus 78 kKL~eLE~ql~eL 90 (468)
.++..|+.++..+
T Consensus 69 ~~~~~l~~~~~~~ 81 (188)
T PF03962_consen 69 NKLEKLQKEIEEL 81 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 313
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.05 E-value=1.2e+03 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=14.0
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 100 FSTQKPKGDEAAKRFQDEIQKLRVQKVQLQC 130 (468)
Q Consensus 100 LlK~k~ksE~kik~L~~EIq~MK~qKVqL~K 130 (468)
+.......+.++..|....+.+..-+.+|..
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~ 260 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEELKARLLE 260 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444443
No 314
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.96 E-value=6.8e+02 Score=24.38 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFK 57 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~ 57 (468)
---+|.+|..++.+++.+.+++..+
T Consensus 10 r~~ki~~L~n~l~elq~~l~~l~~E 34 (194)
T PF15619_consen 10 RLHKIKELQNELAELQRKLQELRKE 34 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777776654
No 315
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.86 E-value=6.9e+02 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKKKLE 95 (468)
Q Consensus 78 kKL~eLE~ql~eLkkKq~ 95 (468)
..|..+..+...|+.+..
T Consensus 27 ~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444443333
No 316
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.79 E-value=3.8e+02 Score=21.46 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 012231 47 LKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLR 122 (468)
Q Consensus 47 lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK 122 (468)
+..++...+..+.+..+ +....+-.+.+..|.+++.-|..|.-..+.... ..+.....+|+.+++++..+|
T Consensus 4 l~~~i~~~l~~~~~~~~---~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~--s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSG---EQRKSLIREIERDLDEAEELLKQMELEVRSLPP--SERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHGGGS-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555543221 333333344455555555444444433332211 233334444555555554444
No 317
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.60 E-value=6.2e+02 Score=27.31 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
.++..++..|..++..++.+.+++...|..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~ 359 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKK 359 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666777777777887777777666543
No 318
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.59 E-value=9.2e+02 Score=25.76 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAA 111 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~ki 111 (468)
+-..-|..|..++..+..|+.+++....+.+. .....| ++...-+.+|-.+|.+.+.+-. ++|..|
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~---~~~~~l-~~a~~~i~~L~~~i~~ik~kA~----------~sE~~V 87 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQ---DAEEDL-EEAQEAIQELFEKISEIKSKAE----------ESEQMV 87 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccccH-HHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 35667788888888888888888877664322 222233 3445666777777777766554 456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 112 KRFQDEIQKLRVQKVQLQCKLK 133 (468)
Q Consensus 112 k~L~~EIq~MK~qKVqL~KKMK 133 (468)
..+-.+|..|=..|-.|..-|.
T Consensus 88 ~~it~dIk~LD~AKrNLT~SIT 109 (383)
T PF04100_consen 88 QEITRDIKQLDNAKRNLTQSIT 109 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776664
No 319
>PLN02678 seryl-tRNA synthetase
Probab=23.54 E-value=5.6e+02 Score=28.21 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012231 36 RVHELEQENDTLKREIEELRFKV 58 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L 58 (468)
+..+|..++..++.||..+-.++
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444
No 320
>PRK14127 cell division protein GpsB; Provisional
Probab=23.45 E-value=3.8e+02 Score=24.05 Aligned_cols=53 Identities=32% Similarity=0.497 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------hHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTP-------DVAAQKLKEAHLEKMNALEGQV 87 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~-------~~~~~KLkeeyrkKL~eLE~ql 87 (468)
|...+..|+.++..++.+.+++-..+....+.. .....- -+--+||+.||+.+
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn--~DiLKRls~LEk~V 101 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATN--YDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcch--HHHHHHHHHHHHHH
Confidence 446777888888888888888877665432110 001111 23357888888765
No 321
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=23.43 E-value=1.2e+03 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=21.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 219 SIEHELEVTV-QVQKVSSEYERELEEMAGVINKLKLEA 255 (468)
Q Consensus 219 WLe~ElEv~v-~~~Ea~~~LE~llE~L~~E~~~Lk~e~ 255 (468)
..|.+|-.+. .++..+..+-.+++..+.+|..|..++
T Consensus 289 ~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443 345556666666666666666666553
No 322
>PRK11020 hypothetical protein; Provisional
Probab=23.34 E-value=3.4e+02 Score=24.86 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 40 LEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 40 LE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
+..||..|-.-.|.+.+.++.....+|. ..+ .+|.+-+..|+.+|..|+.++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~--~~i-~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA--EKY-AQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776654433222 222 456666666777766666554
No 323
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.69 E-value=5.6e+02 Score=22.92 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCK 143 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k 143 (468)
+..-+.++.-+..+|..+..+.-.|.+++.+--..++..-
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777777777777777776666666543
No 324
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.46 E-value=1.2e+02 Score=29.17 Aligned_cols=44 Identities=32% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHH
Q 012231 229 QVQKVSSEYERELEE---MAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEV 288 (468)
Q Consensus 229 ~~~Ea~~~LE~llE~---L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~ 288 (468)
++.+...-|..-+|+ |..|| .|.+.|+.+.-| |+| |++|||.++
T Consensus 1 SLeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QR--LkD----------E~RDLKqEl 47 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESEL----DEKENLREEVQR--LKD----------ELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHH--HHH----------HHHHHHHHH
No 325
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.38 E-value=8.4e+02 Score=27.96 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
+.+++..++.++..++.+.+.+..++.+. .........+...||..|+.++.+++..+...
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~----~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L 404 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVK----TEQAQASVHQLDSQFAQLDGKLADAQSAQQAL 404 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777666665554321 11222333445566666666666655554443
No 326
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=22.35 E-value=1.3e+03 Score=28.34 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=8.1
Q ss_pred ccccccccCCCCCccc
Q 012231 264 RCLLEDDEFDPGVKDS 279 (468)
Q Consensus 264 ~~~l~dke~~c~~kd~ 279 (468)
+|...|. ++|...|.
T Consensus 621 ~~~~~~~-~~~~~~~~ 635 (1021)
T PTZ00266 621 RGGAHDG-VRSGAHDG 635 (1021)
T ss_pred ccccccc-ccCCcccc
Confidence 4666553 36666553
No 327
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=22.28 E-value=2.8e+02 Score=26.48 Aligned_cols=30 Identities=7% Similarity=0.238 Sum_probs=18.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 24 SPAVDDKEHYEKRVHELEQENDTLKREIEE 53 (468)
Q Consensus 24 ~d~q~mk~qYEkKL~eLE~ei~~lq~ERDe 53 (468)
.+++.+...|...|..++.++.++....+.
T Consensus 47 ~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 47 ADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556666666666666666666655555544
No 328
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=22.26 E-value=2.2e+02 Score=22.34 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHh
Q 012231 242 EEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQ 297 (468)
Q Consensus 242 E~L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~ 297 (468)
++|..++..|+.++..++-....-.+ + .-+.|+.++-.|.++..++++
T Consensus 10 ~eL~~~l~elk~eL~~Lr~q~~~~~l-~-------n~~~ir~~Rr~IARi~Tvl~e 57 (58)
T PF00831_consen 10 EELQEKLEELKKELFNLRFQKATGQL-E-------NPHRIREIRRDIARILTVLRE 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS-S-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-c-------cccHHHHHHHHHHHHHHHHhc
Confidence 34777777777777776644222223 3 568899999999999998874
No 329
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.21 E-value=1.1e+03 Score=26.28 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=74.2
Q ss_pred CCCchHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 22 SQSPAVDDKEHYEK--------RVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKK 93 (468)
Q Consensus 22 ~~~d~q~mk~qYEk--------KL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkK 93 (468)
+...++.|+.+... .|...+..+..++..+|.+-..|..- ......+.+........|..++.+...|...
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE-~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE-VKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665 45556667777777777777666531 0011222333344455566666666666554
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 94 LELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKAS 145 (468)
Q Consensus 94 q~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~ 145 (468)
......==.+....-..++.|..+|..+...-..+...+.+....|......
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~ 384 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEE 384 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4443333334455677788888889888888887887777777666665553
No 330
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.87 E-value=4.4e+02 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 67 VAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 67 ~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
+....+++.|...+..|+.++..|.........
T Consensus 28 ~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 28 DEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777776666543
No 331
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=21.78 E-value=2.7e+02 Score=23.87 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 42 QENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKK 93 (468)
Q Consensus 42 ~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkK 93 (468)
..+++|+.|+|-|+..|+ ...+.++=|...|..+..++..|=+-
T Consensus 7 k~mkeLEqEkd~LLqgLe--------~~Er~r~Wy~~qL~~vq~rq~~Lg~~ 50 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLE--------MEERERDWYQQQLQSVQERQRHLGRN 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 346788899999999886 34577788888888888777666443
No 332
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=21.68 E-value=9.2e+02 Score=25.09 Aligned_cols=77 Identities=26% Similarity=0.238 Sum_probs=42.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHH
Q 012231 152 QLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQ 231 (468)
Q Consensus 152 QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~ 231 (468)
+|..+.+.++..++..+....+|+. ++|.||+...+.++.-.- .... -+. ++++..+..-.
T Consensus 123 e~~~qr~~n~e~lk~QEes~~rqE~-~Rr~Te~~i~~~r~~t~~--~eae--L~~--------------e~~~~k~~AEa 183 (276)
T PF12037_consen 123 ELEQQRRRNEELLKMQEESVIRQEQ-MRRATEEQILAQRRQTEE--EEAE--LRR--------------ETERAKAEAEA 183 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHH--HHHH--HHH--------------HHHHHHHHHHH
Confidence 3444455555666666666777777 889998876665542111 1111 111 13444444455
Q ss_pred HHHHHHHHHHHHHHHH
Q 012231 232 KVSSEYERELEEMAGV 247 (468)
Q Consensus 232 Ea~~~LE~llE~L~~E 247 (468)
+++.+.+++-+|+.-+
T Consensus 184 ~gra~~eReN~Di~l~ 199 (276)
T PF12037_consen 184 EGRAKEERENEDINLE 199 (276)
T ss_pred HHHHHHHHHhHhHHHH
Confidence 5777777777774433
No 333
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.60 E-value=5.9e+02 Score=25.16 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
+..++.+++.++.++++|+.-|... .+.+..-++ +.+|...+.+|..++..++.
T Consensus 134 y~D~~arl~~l~~~~~rl~~ll~ka--~~~~d~l~i----e~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLELLEKA--KTVEDLLEI----ERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777666532 112222222 34455555555555444433
No 334
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.41 E-value=1.7e+03 Score=27.99 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 18 SSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 18 ~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
=+..+..+...|...++ .+..++..+..++.++..|-.=+..-.............+|...-..++.-..++.....+.
T Consensus 214 l~~l~~~~i~~l~e~~~-~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1353)
T TIGR02680 214 LPPLDDDELTDVADALE-QLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDEL 292 (1353)
T ss_pred CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777654 46667777777766665543222110000011223333566666566666566666666666
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 012231 98 FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQ 129 (468)
Q Consensus 98 ~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~ 129 (468)
..........+..+..|..+++.+......|.
T Consensus 293 ~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 293 ETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666777777777777777777666653
No 335
>PLN02320 seryl-tRNA synthetase
Probab=21.41 E-value=6.7e+02 Score=28.14 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVAS-VSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~-~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
.+..+...|..++..++.||..+-..+.. ...........--.+...+|.+|+.++..+..+..+.
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 336
>PRK12704 phosphodiesterase; Provisional
Probab=21.40 E-value=1.2e+03 Score=26.17 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=6.7
Q ss_pred hhhhHHHhhhh
Q 012231 404 TSEGAMLLQNS 414 (468)
Q Consensus 404 ~s~~a~llq~a 414 (468)
+.-|+.+|...
T Consensus 383 ~~iGa~il~~~ 393 (520)
T PRK12704 383 VEIGAELAKKY 393 (520)
T ss_pred HHHHHHHHHHc
Confidence 34677777653
No 337
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.37 E-value=1.3e+03 Score=26.73 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CCCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASV--------SSTPDVAAQKLK-----EAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~--------ss~~~~~~~KLk-----eeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
|-.+|-+|+.+++.+..|...+..+...+ .++.+....+++ .+|.-+=.-|=.+-.+|....--..+
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 012231 100 FSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHL 166 (468)
Q Consensus 100 LlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~k 166 (468)
.+..-..+.-....|..||.++-.. +.|+..-=+|..+.+..-...--|-.--=+..|-+.+.+++
T Consensus 185 qVs~LR~sQVEyEglkheikRleEe-~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkk 250 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLKHEIKRLEEE-TELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKK 250 (772)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 338
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.32 E-value=2.1e+02 Score=26.56 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 35 KRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLK-----EAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLk-----eeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
..+..|..+|..|+.|...+-....... ...+.|. ++....+..|+.++..|..++....
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~----~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLE----AELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778888777777766654331 2222222 3445555555555555555544433
No 339
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=21.11 E-value=9.6e+02 Score=25.09 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKR 113 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~ 113 (468)
-..|..+-.++..+..+|..++..|..... .++...+|-..+. .++..-.. -......+..+=.+.-.+...
T Consensus 194 i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~-~DDI~~~ll~~~~----~~~~~~~~---~~i~~~~fe~lf~~eL~kf~~ 265 (353)
T cd09236 194 VRALRVSLEELDRLESRRRRKVERARTKAR-ADDIRPEILREAA----RLEREYPA---TEVAPAHFEDLFDKRLAKYDK 265 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchHHHHHHHH----hhhccccc---ccccHHHHHHHHHHHHHHhhH
Confidence 456777778889999999999999865432 3444445433321 00000000 000001111112222234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012231 114 FQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLK 193 (468)
Q Consensus 114 L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK 193 (468)
+...|.........|++.|+.....|...... -...+.++..+..|+.-+..-.- |.-..++-..|=.-|-
T Consensus 266 ~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~--------~~~~~~re~~lq~L~~ay~~y~e-l~~nl~eG~kFY~dL~ 336 (353)
T cd09236 266 DLDAVSEEAQEQEEILQQIEVANKAFLQSRKG--------DPATKERERALQSLDLAYFKYKE-IVSNLDEGRKFYNDLA 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------ChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999532110 11234556677777777765544 4566666655555554
Q ss_pred HHH
Q 012231 194 ELL 196 (468)
Q Consensus 194 ~lL 196 (468)
.++
T Consensus 337 ~~~ 339 (353)
T cd09236 337 KIL 339 (353)
T ss_pred HHH
Confidence 433
No 340
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.10 E-value=1.1e+03 Score=25.63 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQ-FQFSTQK---PKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~-~rLlK~k---~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
+++..-...|..+-..|...+-.- .-+.+.+ ++-|.-+..|..|=+.+.-|=-.|++..+|-.+.... ..||
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~----LnrE 170 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQT----LNRE 170 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH----HHHH
Confidence 455555566666666665544331 2222222 2223333333333333333333333333322222211 1222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012231 150 IFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELL 196 (468)
Q Consensus 150 I~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL 196 (468)
+ ...-+..+.--..-++-...|..+|..+..-+.++..++.++.
T Consensus 171 L---aE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 171 L---AEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred H---HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 2 2233334444455677778899999999999999999998843
No 341
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.91 E-value=2.5e+02 Score=29.85 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e 96 (468)
+....+.+|..+|..+++.+.+
T Consensus 102 el~~~~~elkkEie~IKk~q~e 123 (370)
T PF02994_consen 102 ELKKRIKELKKEIENIKKNQSE 123 (370)
T ss_dssp ----------------H-----
T ss_pred HHHHHHHHHHHHHHHHhhhHHH
Confidence 4566677777777777766644
No 342
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.88 E-value=7.3e+02 Score=23.56 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 012231 68 AAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKV-------QLQCKLKLEAVQFR 140 (468)
Q Consensus 68 ~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKV-------qL~KKMKEEsekfR 140 (468)
.++.+=..+...+.+++.-..+|.++.....++.........++..+..+|..+...-. .+-..|+.|.++|.
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~ 201 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFE 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466777888889889999999999988888755667888888888887775333 45677888888888
Q ss_pred HHHHH
Q 012231 141 LCKAS 145 (468)
Q Consensus 141 ~~k~~ 145 (468)
..+..
T Consensus 202 ~~k~~ 206 (236)
T PF09325_consen 202 KEKVK 206 (236)
T ss_pred HHHHH
Confidence 88774
No 343
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=20.68 E-value=6.9e+02 Score=23.24 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 29 DKEHYEKRVHELEQENDTLK 48 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq 48 (468)
|+.++++.|.-|..++..+.
T Consensus 16 ~N~QLekqi~~l~~kiek~r 35 (129)
T PF15372_consen 16 LNDQLEKQIIILREKIEKIR 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777777777777776665
No 344
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.43 E-value=5.9e+02 Score=22.33 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 26 AVDDKEHYEKRVHELEQENDTLKREIEELRFK 57 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~ 57 (468)
.....++|...|..|..++..++..+.++...
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999888776543
No 345
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=20.20 E-value=9.8e+02 Score=24.84 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC-C-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012231 36 RVHELEQENDTLKREIEELRFKVASVSS-T-------PDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKP 105 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~ss-~-------~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ 105 (468)
++..|-.+.+.|+.|.......-..+-+ + ..+...++..+++-=|+..+.+...|+.-..--.+.+..++
T Consensus 53 ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqq 130 (268)
T PF11802_consen 53 QLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQ 130 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566665555544332211 1 23444555566666666666665555555444444444333
No 346
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.05 E-value=4.8e+02 Score=25.99 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQ 129 (468)
Q Consensus 78 kKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~ 129 (468)
.|++++++..++++++..+-. ++..+.++++|+.+=.+|-.-.-+|+
T Consensus 72 ekm~~~qk~m~efq~e~~eA~-----~~~d~~~lkkLq~~qmem~~~Q~elm 118 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQ-----ESGDMKKLKKLQEKQMEMMDDQRELM 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665554432 24456666666665555544444443
No 347
>KOG4850 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=47 Score=32.01 Aligned_cols=16 Identities=31% Similarity=0.968 Sum_probs=11.8
Q ss_pred ccccCCCC-CCCCcccC
Q 012231 368 ECRVSGGS-CGTSCGCA 383 (468)
Q Consensus 368 ~c~~~~~~-c~~~c~c~ 383 (468)
.|++-|+. ||++|.|+
T Consensus 151 ~C~~CGSTkCG~~CR~n 167 (190)
T KOG4850|consen 151 PCKQCGSTKCGIGCRQN 167 (190)
T ss_pred ccccccccccccccccc
Confidence 56666654 99999885
Done!