Query 012231
Match_columns 468
No_of_seqs 168 out of 215
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 97.2 0.057 1.9E-06 50.9 21.0 171 29-259 11-181 (189)
2 1i84_S Smooth muscle myosin he 95.8 0.03 1E-06 64.7 10.5 14 78-91 885-898 (1184)
3 2dfs_A Myosin-5A; myosin-V, in 95.7 0.37 1.3E-05 55.6 19.2 127 30-174 923-1049(1080)
4 3na7_A HP0958; flagellar bioge 95.7 1.2 4E-05 42.8 19.7 108 33-142 16-123 (256)
5 2v71_A Nuclear distribution pr 94.9 0.61 2.1E-05 43.9 14.4 102 31-143 20-122 (189)
6 3oja_B Anopheles plasmodium-re 93.6 1.5 5.3E-05 45.7 15.9 70 129-198 511-580 (597)
7 1c1g_A Tropomyosin; contractIl 91.6 7.1 0.00024 34.9 32.3 19 36-54 21-39 (284)
8 3oja_B Anopheles plasmodium-re 91.1 3.6 0.00012 42.9 14.7 12 40-51 461-472 (597)
9 3ol1_A Vimentin; structural ge 90.9 7.3 0.00025 33.6 16.0 33 29-61 14-46 (119)
10 2dfs_A Myosin-5A; myosin-V, in 87.7 15 0.00052 42.4 17.7 34 104-137 1018-1051(1080)
11 1ml9_A Histone H3 methyltransf 86.2 0.49 1.7E-05 46.7 3.9 40 352-392 48-127 (302)
12 1mvh_A Cryptic LOCI regulator 85.8 0.46 1.6E-05 47.1 3.4 40 352-392 67-131 (299)
13 3na7_A HP0958; flagellar bioge 85.3 26 0.0009 33.4 23.8 84 108-193 59-142 (256)
14 3hna_A Histone-lysine N-methyl 84.4 0.39 1.3E-05 47.4 2.1 38 352-392 81-141 (287)
15 3s4r_A Vimentin; alpha-helix, 84.1 13 0.00046 30.8 11.2 84 20-123 5-91 (93)
16 1c1g_A Tropomyosin; contractIl 83.3 24 0.00083 31.3 32.4 25 35-59 6-30 (284)
17 1t2y_A Metallothionein, MT; pr 82.5 0.72 2.5E-05 30.4 2.1 19 353-383 2-20 (26)
18 3tnu_B Keratin, type II cytosk 81.2 26 0.00089 30.2 14.3 94 71-171 8-105 (129)
19 3oja_A Leucine-rich immune mol 81.2 23 0.0008 36.0 14.1 24 75-98 364-387 (487)
20 3bo5_A Histone-lysine N-methyl 80.8 1.1 3.7E-05 44.2 3.8 39 352-392 60-120 (290)
21 3tnu_A Keratin, type I cytoske 80.3 28 0.00097 30.1 13.6 99 70-171 9-107 (131)
22 3h6l_A Histone-lysine N-methyl 79.5 1 3.4E-05 44.3 3.1 40 351-392 63-111 (278)
23 2v66_B Nuclear distribution pr 79.1 31 0.0011 29.8 16.6 36 141-176 35-70 (111)
24 3lay_A Zinc resistance-associa 78.5 17 0.00059 33.5 10.8 57 68-127 75-131 (175)
25 3hnw_A Uncharacterized protein 77.8 4.5 0.00015 36.0 6.5 104 23-134 27-135 (138)
26 3i00_A HIP-I, huntingtin-inter 74.2 23 0.00079 30.9 9.9 67 43-123 16-82 (120)
27 3ope_A Probable histone-lysine 72.9 2.2 7.5E-05 40.1 3.3 40 351-392 22-67 (222)
28 1f5n_A Interferon-induced guan 72.6 65 0.0022 34.7 15.1 46 68-114 485-531 (592)
29 1go4_E MAD1 (mitotic arrest de 72.4 11 0.00039 32.0 7.3 62 33-94 17-91 (100)
30 3u1c_A Tropomyosin alpha-1 cha 72.2 31 0.0011 28.8 10.0 21 77-97 50-70 (101)
31 2r3a_A Histone-lysine N-methyl 70.0 2 6.8E-05 42.6 2.4 17 375-392 118-134 (300)
32 4dci_A Uncharacterized protein 70.0 37 0.0013 30.7 10.5 73 27-99 28-105 (150)
33 1m0j_A Metallothionein MT_NC; 69.8 0.96 3.3E-05 30.4 0.1 23 354-388 3-25 (28)
34 3iox_A AGI/II, PA; alpha helix 69.6 1E+02 0.0035 32.9 15.2 49 72-120 28-77 (497)
35 3oja_A Leucine-rich immune mol 69.4 1E+02 0.0035 31.3 17.5 65 134-198 414-478 (487)
36 3hnw_A Uncharacterized protein 68.8 61 0.0021 28.6 11.6 52 109-171 82-133 (138)
37 3swk_A Vimentin; cytoskeleton, 68.5 11 0.00037 30.9 6.2 83 37-123 2-84 (86)
38 1dme_A CD6 metallothionein-1; 68.3 3.6 0.00012 27.4 2.6 23 364-388 6-28 (28)
39 2v66_B Nuclear distribution pr 67.8 26 0.0009 30.3 8.6 59 77-141 9-67 (111)
40 3mq9_A Bone marrow stromal ant 66.8 74 0.0025 32.2 13.4 77 41-122 372-456 (471)
41 2k48_A Nucleoprotein; viral pr 65.4 22 0.00074 30.6 7.5 64 34-98 34-102 (107)
42 3ooi_A Histone-lysine N-methyl 64.7 2.9 9.9E-05 39.7 2.3 39 352-391 43-85 (232)
43 3u59_A Tropomyosin beta chain; 64.1 58 0.002 27.0 10.0 20 76-95 49-68 (101)
44 1l8d_A DNA double-strand break 62.8 63 0.0022 26.6 11.0 67 30-96 12-89 (112)
45 1deq_A Fibrinogen (alpha chain 61.8 1.5E+02 0.0052 30.6 16.7 45 156-200 103-147 (390)
46 2lua_A Protein MALE-specific l 61.5 5 0.00017 30.5 2.5 37 352-391 5-47 (52)
47 2ic6_A Nucleocapsid protein; h 61.0 33 0.0011 28.0 7.5 62 36-98 6-72 (78)
48 2efr_A General control protein 58.6 1.1E+02 0.0036 27.8 15.0 92 34-133 34-129 (155)
49 2b5u_A Colicin E3; high resolu 57.9 2E+02 0.0069 30.8 18.5 75 127-201 295-374 (551)
50 2knp_A Mcocc-1; disulfide-rich 57.2 3.3 0.00011 28.1 0.8 21 362-385 2-22 (33)
51 4fi5_A Nucleoprotein; structur 57.2 35 0.0012 29.6 7.4 62 37-99 24-90 (113)
52 2ic9_A Nucleocapsid protein; h 56.3 58 0.002 27.6 8.5 64 36-100 6-74 (96)
53 3swf_A CGMP-gated cation chann 55.7 54 0.0019 26.5 7.9 48 33-91 5-52 (74)
54 3o0z_A RHO-associated protein 55.3 1.3E+02 0.0044 27.7 17.9 57 107-174 95-155 (168)
55 1qjl_A Metallothionein; metal- 53.9 9.6 0.00033 25.6 2.7 17 372-388 11-27 (28)
56 3o0z_A RHO-associated protein 53.9 1.4E+02 0.0047 27.6 16.6 80 33-123 4-83 (168)
57 2xzr_A Immunoglobulin-binding 53.2 1.1E+02 0.0036 26.2 10.0 30 32-61 3-32 (114)
58 1deq_A Fibrinogen (alpha chain 53.2 62 0.0021 33.5 9.8 70 29-98 54-133 (390)
59 2lw1_A ABC transporter ATP-bin 53.0 70 0.0024 25.8 8.4 55 32-90 19-75 (89)
60 3tnu_A Keratin, type I cytoske 52.8 1.1E+02 0.0038 26.3 12.3 46 74-119 41-87 (131)
61 3swy_A Cyclic nucleotide-gated 51.9 51 0.0018 24.3 6.6 43 33-86 3-45 (46)
62 3trt_A Vimentin; cytoskeleton, 51.9 51 0.0017 25.7 7.2 21 26-46 11-31 (77)
63 3tnu_B Keratin, type II cytosk 49.5 1.2E+02 0.0043 25.9 12.6 47 74-120 39-86 (129)
64 2zqm_A Prefoldin beta subunit 48.5 1.1E+02 0.0038 25.0 10.7 30 32-61 17-49 (117)
65 3vkg_A Dynein heavy chain, cyt 48.0 5.9E+02 0.02 33.2 29.0 33 163-195 2015-2047(3245)
66 3ghg_A Fibrinogen alpha chain; 47.3 2.1E+02 0.0072 30.9 12.9 17 82-98 114-130 (562)
67 3i00_A HIP-I, huntingtin-inter 47.0 79 0.0027 27.5 8.2 46 35-91 15-60 (120)
68 3lay_A Zinc resistance-associa 46.8 1.2E+02 0.0042 27.8 9.9 29 27-55 77-105 (175)
69 3u1c_A Tropomyosin alpha-1 cha 46.3 1.3E+02 0.0043 25.0 9.5 21 75-95 34-54 (101)
70 3ghg_A Fibrinogen alpha chain; 41.9 3E+02 0.01 29.7 13.1 33 167-200 126-158 (562)
71 3a7p_A Autophagy protein 16; c 41.8 2E+02 0.0069 26.1 11.6 37 156-192 111-148 (152)
72 1x4t_A Hypothetical protein LO 39.3 16 0.00053 30.8 2.4 30 276-305 49-78 (92)
73 3vem_A Helicase protein MOM1; 37.9 2E+02 0.0069 25.0 9.5 60 24-97 39-98 (115)
74 3vkg_A Dynein heavy chain, cyt 37.4 8.3E+02 0.028 31.9 22.1 12 34-45 1909-1920(3245)
75 1vp7_A Exodeoxyribonuclease VI 36.1 1.5E+02 0.0051 25.1 8.0 51 32-90 31-84 (100)
76 1l8d_A DNA double-strand break 35.6 1.7E+02 0.0058 23.9 8.3 65 244-308 29-93 (112)
77 2eqb_B RAB guanine nucleotide 34.8 2.1E+02 0.0071 24.2 12.1 86 23-120 4-94 (97)
78 3cvf_A Homer-3, homer protein 34.1 1.9E+02 0.0065 23.5 8.5 65 32-100 10-74 (79)
79 2kak_A EC protein I/II; metall 33.9 33 0.0011 26.1 3.1 30 352-383 4-44 (53)
80 2i1j_A Moesin; FERM, coiled-co 33.8 1.5E+02 0.0052 31.6 9.6 31 67-97 331-361 (575)
81 2eqb_B RAB guanine nucleotide 33.7 1.1E+02 0.0039 25.8 6.8 49 41-89 46-94 (97)
82 3qne_A Seryl-tRNA synthetase, 33.5 2.1E+02 0.007 30.3 10.4 71 224-310 32-102 (485)
83 3iv1_A Tumor susceptibility ge 33.3 2E+02 0.0067 23.4 9.3 55 70-124 10-68 (78)
84 1lrz_A FEMA, factor essential 32.7 1.9E+02 0.0066 29.0 9.8 58 34-100 246-303 (426)
85 3ol1_A Vimentin; structural ge 31.5 2.4E+02 0.0083 23.9 14.5 95 17-122 9-103 (119)
86 2dq0_A Seryl-tRNA synthetase; 30.7 2.6E+02 0.0088 29.0 10.5 73 224-312 30-102 (455)
87 4mt2_A Metallothionein isoform 30.5 49 0.0017 25.8 3.7 35 350-389 10-44 (62)
88 3sja_C Golgi to ER traffic pro 29.9 1.8E+02 0.0062 22.9 7.0 50 41-94 5-55 (65)
89 1m1j_B Fibrinogen beta chain; 29.2 5.3E+02 0.018 27.1 13.1 15 80-94 137-151 (464)
90 2ke4_A CDC42-interacting prote 28.5 2.6E+02 0.0088 23.3 9.4 71 27-98 14-89 (98)
91 1gd2_E Transcription factor PA 28.1 1.2E+02 0.0041 24.0 5.7 24 71-94 22-45 (70)
92 2jee_A YIIU; FTSZ, septum, coi 27.8 2.5E+02 0.0085 22.9 9.7 56 108-167 19-74 (81)
93 4etp_A Kinesin-like protein KA 27.7 1.6E+02 0.0053 30.1 8.1 14 109-122 45-58 (403)
94 3sjb_C Golgi to ER traffic pro 27.7 2.6E+02 0.0089 23.4 8.0 52 41-96 22-74 (93)
95 3vp9_A General transcriptional 27.1 1.5E+02 0.0051 24.8 6.4 46 74-119 39-85 (92)
96 3mov_A Lamin-B1; LMNB1, B-type 26.7 1.6E+02 0.0056 24.4 6.6 20 74-93 40-59 (95)
97 3viq_B Mating-type switching p 26.7 1.7E+02 0.0057 24.2 6.5 48 31-84 4-51 (85)
98 1y29_A Huwentoxin-X; A double- 26.1 42 0.0014 22.3 2.2 7 382-388 22-28 (28)
99 3iox_A AGI/II, PA; alpha helix 24.5 6.6E+02 0.023 26.7 15.5 51 73-129 4-54 (497)
100 2oqq_A Transcription factor HY 23.9 1.7E+02 0.0057 21.3 5.3 29 30-58 12-40 (42)
101 2ocy_A RAB guanine nucleotide 23.7 4.1E+02 0.014 24.0 18.0 130 37-177 15-144 (154)
102 1ik9_A DNA repair protein XRCC 23.7 2.3E+02 0.008 26.6 7.9 27 33-59 137-163 (213)
103 4mt2_A Metallothionein isoform 23.5 49 0.0017 25.9 2.5 15 376-390 16-30 (62)
104 3he5_A Synzip1; heterodimeric 23.1 2.2E+02 0.0075 20.7 6.6 43 37-95 5-48 (49)
105 3haj_A Human pacsin2 F-BAR; pa 23.0 6.2E+02 0.021 25.9 13.3 101 35-146 129-240 (486)
106 2lf0_A Uncharacterized protein 23.0 2.6E+02 0.009 24.5 7.4 53 40-95 8-60 (123)
107 3cvf_A Homer-3, homer protein 22.9 1.3E+02 0.0045 24.4 5.2 31 30-60 22-52 (79)
108 2dq0_A Seryl-tRNA synthetase; 22.4 4.5E+02 0.015 27.2 10.5 26 34-59 37-62 (455)
109 3a7p_A Autophagy protein 16; c 22.2 4.4E+02 0.015 23.9 11.2 12 127-138 132-143 (152)
110 1kd8_A GABH AIV, GCN4 acid bas 22.1 1.6E+02 0.0056 20.7 4.7 28 32-59 5-32 (36)
111 2oxj_A Hybrid alpha/beta pepti 21.3 1.8E+02 0.006 20.3 4.7 27 32-58 5-31 (34)
112 2p2u_A HOST-nuclease inhibitor 20.9 3.8E+02 0.013 24.1 8.5 34 67-100 41-74 (171)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.23 E-value=0.057 Score=50.89 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGD 108 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE 108 (468)
--.+|-....++..++..++.|.++.... .+.|..+.+.-|..+++++.+|+.+
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqes-----------SrELE~ELE~eL~~~Ek~~~~L~~~--------------- 64 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEG-----------SRELEAELEAQLVQAEQRNRDLQAD--------------- 64 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 34577788888888888888888887643 3467777777777777777777643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012231 109 EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEA 188 (468)
Q Consensus 109 ~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa 188 (468)
+..|..|+...|. +...-...+-..-....+||.+|+...+.....|+.|+..|.-=+.-.+-.+.=+.-+
T Consensus 65 --~~~L~~E~e~~k~-------K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 65 --NQRLKYEVEALKE-------KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp --HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 4455566665553 3333333333344555667777777777777777777766654444333333333333
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 012231 189 TKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMK 259 (468)
Q Consensus 189 ~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~ 259 (468)
..++-.+++ ..-||+.||+- +..|...+++|..|+..|+.++..+.
T Consensus 136 e~kln~aiE------------------r~alLE~El~E-------Ke~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 136 EQRLNQAIE------------------RNAFLESELDE-------KESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHH------------------HHHHHHHHHHH-------HHHHHCCC------------------
T ss_pred HHHHHHHHH------------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222222 23378888772 44566666667777777777776554
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.77 E-value=0.03 Score=64.69 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 012231 78 EKMNALEGQVLELK 91 (468)
Q Consensus 78 kKL~eLE~ql~eLk 91 (468)
.++..|+.++.+++
T Consensus 885 ~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 885 QKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.75 E-value=0.37 Score=55.56 Aligned_cols=127 Identities=19% Similarity=0.147 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDE 109 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~ 109 (468)
+...+.+|.+|+..+...+.+...|...+. .+.......+..|+.++.+|+. +.+.....+.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~-----------~~~~~~~~e~~~L~~~l~~le~-------~~~e~~~~~~ 984 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMN-----------NLEITYSTETEKLRSDVERLRM-------SEEEAKNATN 984 (1080)
T ss_dssp ----------------------------CH-----------HHHHHHHHHHHHHHHTHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 444555555555555444444444443322 1222333444444444444444 4444445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012231 110 AAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRL 174 (468)
Q Consensus 110 kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ 174 (468)
++..|+.||..+..+=..+.+..+.=-+++.+.+...+..|..|+++..+-+.++..|+..-..+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666555555555555556666778888888888888888887544444
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.67 E-value=1.2 Score=42.82 Aligned_cols=108 Identities=8% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAK 112 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik 112 (468)
.+.+|..|...+..+..|++.+...+......-......+ .+....+..++..|.+++.+......-+. ..++...+.
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l-~d~~~~~~~~e~~i~~~~~ri~~~~~~l~-~v~~~kE~~ 93 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK-LALKLQVSKNEQTLQDTNAKIASIQKKMS-EIKSERELR 93 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSSSSHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCHHHHH
Confidence 3445555555555555555555544433211000111122 44556666666666666666655443333 244777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 113 RFQDEIQKLRVQKVQLQCKLKLEAVQFRLC 142 (468)
Q Consensus 113 ~L~~EIq~MK~qKVqL~KKMKEEsekfR~~ 142 (468)
.|..||..++.....|-..+.+-.++....
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777766666555554433
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.91 E-value=0.61 Score=43.94 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL-QFQFSTQKPKGDE 109 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e-~~rLlK~k~ksE~ 109 (468)
..|...+.+|+.+....+..=.+|=++|.. .| +..++++..|..++..|...... -.++.........
T Consensus 20 ~~~~q~~~~le~El~EFqesSrELE~ELE~----------eL-~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~ 88 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSRELEAELEA----------QL-VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666666666652 12 33344555555555555544444 2444455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 110 AAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCK 143 (468)
Q Consensus 110 kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k 143 (468)
.+..|+.+|..++..+..|..++++=-.....++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8899999999999999999888876444433333
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.61 E-value=1.5 Score=45.68 Aligned_cols=70 Identities=16% Similarity=-0.026 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012231 129 QCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLES 198 (468)
Q Consensus 129 ~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~ 198 (468)
++++++........-....+++.+++++-..-+.++..|+...+.++..+.+-.+|.+.++..++.++++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443334444455556666666666778888888888888888888899999999999988763
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.63 E-value=7.1 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEEL 54 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDel 54 (468)
.+..|+.++..++.+...+
T Consensus 21 ~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 21 RADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.09 E-value=3.6 Score=42.92 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012231 40 LEQENDTLKREI 51 (468)
Q Consensus 40 LE~ei~~lq~ER 51 (468)
++.++..++.+.
T Consensus 461 ~~~~i~~l~~~~ 472 (597)
T 3oja_B 461 LRAEVQQLTNEQ 472 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.87 E-value=7.3 Score=33.60 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
+...|+.-|..|..+|..+..|+..+..++.+.
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999888653
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.70 E-value=15 Score=42.36 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=21.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAV 137 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEse 137 (468)
+..-++++..|+.|.+.|++|..+|...+.+.++
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777777776666655555544
No 11
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=86.16 E-value=0.49 Score=46.71 Aligned_cols=40 Identities=35% Similarity=0.900 Sum_probs=31.7
Q ss_pred cccccCCCCccccCccccccCC----------------------------------------CCCCCCcccCCcccCCCC
Q 012231 352 VCCSCSKKSSCKTSKCECRVSG----------------------------------------GSCGTSCGCAANKCTNRE 391 (468)
Q Consensus 352 ~cc~csk~s~ckt~~c~c~~~~----------------------------------------~~c~~~c~c~~~kc~n~~ 391 (468)
.+|+|.....|-...|.|.... --|++.|+|. ..|.||.
T Consensus 48 ~gC~C~~~~~C~~~~C~C~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~g~l~~~~~~~~~~i~EC~~~C~C~-~~C~Nr~ 126 (302)
T 1ml9_A 48 VGCSCASDEECMYSTCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACS-KDCPNRV 126 (302)
T ss_dssp CCCCCSSTTGGGSTTSGGGTTSCCC-----------CCSSBBCSSTTBTSBCHHHHHHCCCEECCCTTCSSC-TTCTTCH
T ss_pred CCccCcCCCCcCCCCCcChhhccccccccccccccccccccccCCcccceeehhcccCCCCeEecCCCCCCC-CCCCCcc
Confidence 7899987668988899996531 1599999998 5699986
Q ss_pred C
Q 012231 392 L 392 (468)
Q Consensus 392 ~ 392 (468)
.
T Consensus 127 ~ 127 (302)
T 1ml9_A 127 V 127 (302)
T ss_dssp H
T ss_pred c
Confidence 4
No 12
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=85.76 E-value=0.46 Score=47.05 Aligned_cols=40 Identities=35% Similarity=0.890 Sum_probs=32.4
Q ss_pred cccccCCCCcccc---CccccccCC----------------------CCCCCCcccCCcccCCCCC
Q 012231 352 VCCSCSKKSSCKT---SKCECRVSG----------------------GSCGTSCGCAANKCTNREL 392 (468)
Q Consensus 352 ~cc~csk~s~ckt---~~c~c~~~~----------------------~~c~~~c~c~~~kc~n~~~ 392 (468)
.+|+|.....|-. ..|.|.... --|++.|+|.+ .|.||..
T Consensus 67 ~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~~C~C~~-~C~Nr~~ 131 (299)
T 1mvh_A 67 SGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSM-ECPNRVV 131 (299)
T ss_dssp CCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCT-TCTTCTG
T ss_pred CCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCCCCCCCCC-CcCCccc
Confidence 6899987678987 789997432 36999999985 7999985
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.34 E-value=26 Score=33.36 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFE 187 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaA 187 (468)
+..++.++.+|......-.+...+|.. ..-.|+..+ ..+||..++++....+.+|..+...-+.....+..-.+++..
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~a-L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~ 136 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRS-LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888877777777777743 223344443 457777777777777777777777666666666555555555
Q ss_pred HHHHHH
Q 012231 188 ATKRLK 193 (468)
Q Consensus 188 a~KRLK 193 (468)
+...|.
T Consensus 137 ~~~~l~ 142 (256)
T 3na7_A 137 LEKLAL 142 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 14
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=84.35 E-value=0.39 Score=47.36 Aligned_cols=38 Identities=34% Similarity=0.927 Sum_probs=30.5
Q ss_pred cccccCCCCccccCccccccC---------C--------------CCCCCCcccCCcccCCCCC
Q 012231 352 VCCSCSKKSSCKTSKCECRVS---------G--------------GSCGTSCGCAANKCTNREL 392 (468)
Q Consensus 352 ~cc~csk~s~ckt~~c~c~~~---------~--------------~~c~~~c~c~~~kc~n~~~ 392 (468)
.+|.|.. .|-+..|.|... | --|++.|+|.. .|.||..
T Consensus 81 ~gC~C~~--~C~~~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~-~C~Nr~~ 141 (287)
T 3hna_A 81 QYCVCID--DCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWR-NCRNRVV 141 (287)
T ss_dssp CCCCCSS--SSCSTTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTSSSCT-TCSSCSG
T ss_pred CCCcCcC--CCCCCCCcCcccCcccccCCCCcccccccccCCceEEecCCCCCCCC-CCCCccc
Confidence 5899974 798889999742 1 25999999986 8999985
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.11 E-value=13 Score=30.79 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=58.2
Q ss_pred CCCCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 20 SLSQSPAVDDKEH---YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 20 ~~~~~d~q~mk~q---YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
..-..+|+.++.. |=.|+..||.+...|+.+...+... ....+..-|+.-|.+|..+|..+...
T Consensus 5 ~~EKe~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~----------~~~~~~~~ye~~i~~Lr~~i~~~~~e--- 71 (93)
T 3s4r_A 5 TNEKVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ----------GKSRLGDLYEEEMRELRRQVDQLTND--- 71 (93)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cCCCcHHHHHHHHHHHHHHHHHHHHH---
Confidence 3444567777754 7789999999999999998766532 12356667777777777766665533
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHH
Q 012231 97 QFQFSTQKPKGDEAAKRFQDEIQKLRV 123 (468)
Q Consensus 97 ~~rLlK~k~ksE~kik~L~~EIq~MK~ 123 (468)
+.+-+-.+..|..++..+|.
T Consensus 72 -------k~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 72 -------KARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHh
Confidence 34455677788888888774
No 16
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.27 E-value=24 Score=31.31 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 35 KRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
++|..|+.++..+..+.+.+-..+.
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443
No 17
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=82.52 E-value=0.72 Score=30.45 Aligned_cols=19 Identities=53% Similarity=1.438 Sum_probs=15.2
Q ss_pred ccccCCCCccccCccccccCCCCCCCCcccC
Q 012231 353 CCSCSKKSSCKTSKCECRVSGGSCGTSCGCA 383 (468)
Q Consensus 353 cc~csk~s~ckt~~c~c~~~~~~c~~~c~c~ 383 (468)
-|.||..++|. ||++|+|.
T Consensus 2 ~CgCs~tgtC~------------Cg~~CsC~ 20 (26)
T 1t2y_A 2 DCGCSGASSCN------------CGSGCSCS 20 (26)
T ss_dssp CCSCSSTTTCC------------CSSSCCSS
T ss_pred CcccCCCcccc------------CCCCcccc
Confidence 48888877776 89999887
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.19 E-value=26 Score=30.25 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 71 KLKEAHLEKMNALEGQVLELK----KKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASL 146 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLk----kKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~r 146 (468)
.+..-|..|+.+|...+..-. ....+... .-..|..|+.||+.++.++..|-..|.+--.+|...-...
T Consensus 8 eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~e-------lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~ 80 (129)
T 3tnu_B 8 EAESWYQTKYEELQQTAGRHGDDLRNTKHEISE-------MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA 80 (129)
T ss_dssp --------------------------CHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666655544322 11122222 2356788999999999999999999987666665544444
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 147 QKEIFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 147 eKEI~QLKKe~RK~q~ei~kLe~~~ 171 (468)
..-|..|..+-.+-..+|...-..+
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4445555444444444444443333
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.16 E-value=23 Score=36.05 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
..+++-.+++..+...++...+..
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~ 387 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELD 387 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555666666666666665543
No 20
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=80.85 E-value=1.1 Score=44.15 Aligned_cols=39 Identities=33% Similarity=0.954 Sum_probs=30.0
Q ss_pred cccccCCCCccccCccccccCCC----------------------CCCCCcccCCcccCCCCC
Q 012231 352 VCCSCSKKSSCKTSKCECRVSGG----------------------SCGTSCGCAANKCTNREL 392 (468)
Q Consensus 352 ~cc~csk~s~ckt~~c~c~~~~~----------------------~c~~~c~c~~~kc~n~~~ 392 (468)
.+|.|.. ..|-+..|.|-..+. -|++.|+|. ..|.||..
T Consensus 60 ~gC~C~~-~~C~~~~C~C~~~~~~y~~~~~l~~~~~~~~~~~~~~EC~~~C~C~-~~C~Nr~~ 120 (290)
T 3bo5_A 60 PGCICVK-TPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCS-DHCRNRVV 120 (290)
T ss_dssp CCCCCCS-SCCCTTTCGGGTTSCSBCTTSCBCC-----CCCCCEECCCTTCCSC-TTCTTCCG
T ss_pred CCCCCCC-CCcCCCCCcchhhcCccCccccccccccccccCCceEeCCCCCCCC-CCCCCeEc
Confidence 5899976 468888899865532 377889997 48999985
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.34 E-value=28 Score=30.14 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012231 70 QKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKE 149 (468)
..+..-|..|+.+|...+..-...... ........-..|..|+.||+.++.++..|-..|.+--.+|...-......
T Consensus 9 ~eaE~~y~~K~eel~~~~~~~~~~l~~---~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~ 85 (131)
T 3tnu_A 9 KDAEEWFFTKTEELNREVATNSELVQS---GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM 85 (131)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455777777766655432211111 11122333457889999999999999999999987666665544444444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 012231 150 IFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 150 I~QLKKe~RK~q~ei~kLe~~~ 171 (468)
|..|..+-.+-..+|...-..+
T Consensus 86 i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444444444
No 22
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=79.47 E-value=1 Score=44.28 Aligned_cols=40 Identities=28% Similarity=0.697 Sum_probs=32.0
Q ss_pred CcccccCCCC---------ccccCccccccCCCCCCCCcccCCcccCCCCC
Q 012231 351 GVCCSCSKKS---------SCKTSKCECRVSGGSCGTSCGCAANKCTNREL 392 (468)
Q Consensus 351 ~~cc~csk~s---------~ckt~~c~c~~~~~~c~~~c~c~~~kc~n~~~ 392 (468)
..-|.|...+ .|.. -|.||..---|++.|+|. ..|.||..
T Consensus 63 ~~~C~C~~~~~~~~~~~~~~C~~-~C~nr~~~~EC~~~C~C~-~~C~Nr~~ 111 (278)
T 3h6l_A 63 RMQCECTPLSKDERAQGEIACGE-DCLNRLLMIECSSRCPNG-DYCSNRRF 111 (278)
T ss_dssp --CCCCCCCCHHHHHHTCCSSCT-TCTTGGGTBCCCTTCTTG-GGCSSCTT
T ss_pred cceeeccCCCcccccccCCCCCC-CCCCcceEeccCCCCCcC-CCCCCccc
Confidence 3578887643 7874 699999999999999997 57999975
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.09 E-value=31 Score=29.84 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=20.6
Q ss_pred HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012231 141 LCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKL 176 (468)
Q Consensus 141 ~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~ 176 (468)
..-....+||.+|+...+.....|+.|+..|.-=+.
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 334445566666666666666666666666544333
No 24
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=78.47 E-value=17 Score=33.51 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Q 012231 68 AAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQ 127 (468)
Q Consensus 68 ~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVq 127 (468)
+.++|.++|+.+..+|..++...+ .+...|.....-.+.+|+.|..||..++.+...
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr---~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKR---YEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888877755555 555667777788899999999999988875444
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.79 E-value=4.5 Score=36.03 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccCCCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 23 QSPAVDDKEHYEKRVHELEQE--NDTLKREIEELRFKVASVSSTPDVAAQKLK---EAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~e--i~~lq~ERDell~~L~~~ss~~~~~~~KLk---eeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
+..+..+-.....+|.++... ...+-.++--+|.+|.-. +..-+++ +..+..+.+++.++..|+.....
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNia-----dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~- 100 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIA-----DDYFKAKKMADSLSLDIENKDKEIYDLKHELIA- 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345677778899999999955 888889999999887632 3333333 45577788888888888875544
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 98 FQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKL 134 (468)
Q Consensus 98 ~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKE 134 (468)
+.-.-......+..|+.+|..+..+.++|...+.+
T Consensus 101 --~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 101 --AQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344556778888999999999999999877754
No 26
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.20 E-value=23 Score=30.88 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 012231 43 ENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLR 122 (468)
Q Consensus 43 ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK 122 (468)
.|..|..|.+.|..+|. .+..+++.-+..|+.+|..|...+.++..+ +.+.-.....|+.++..+.
T Consensus 16 ~Ie~Lkreie~lk~ele-----------~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~---~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 16 LIERLYREISGLKAQLE-----------NMKTESQRVVLQLKGHVSELEADLAEQQHL---RQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444 223444444555555555555544444422 2222233345556666554
Q ss_pred H
Q 012231 123 V 123 (468)
Q Consensus 123 ~ 123 (468)
.
T Consensus 82 ~ 82 (120)
T 3i00_A 82 R 82 (120)
T ss_dssp T
T ss_pred H
Confidence 3
No 27
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=72.88 E-value=2.2 Score=40.13 Aligned_cols=40 Identities=28% Similarity=0.843 Sum_probs=32.3
Q ss_pred CcccccCCC-----CccccCccccccCCCCCCC-CcccCCcccCCCCC
Q 012231 351 GVCCSCSKK-----SSCKTSKCECRVSGGSCGT-SCGCAANKCTNREL 392 (468)
Q Consensus 351 ~~cc~csk~-----s~ckt~~c~c~~~~~~c~~-~c~c~~~kc~n~~~ 392 (468)
..-|.|... ..|. .-|.+|.+.--|++ .|+|.+ .|.||..
T Consensus 22 ~~~C~C~~~~~~~~~~c~-~~C~nr~~~~EC~~~~C~C~~-~C~Nr~~ 67 (222)
T 3ope_A 22 ATTCNCKKPDDDTRKGCV-DDCLNRMIFAECSPNTCPCGE-QCCNQRI 67 (222)
T ss_dssp CCCCCCCCCSCSSSCSSC-SCCTTGGGTBCCCTTTCTTTT-SCSSCTT
T ss_pred CccccCcCCCcCCCCCCc-ccCcCcCeEeEeCCCCCcCCC-CCCCceE
Confidence 367888763 3575 68999999999998 799976 7999964
No 28
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=72.57 E-value=65 Score=34.73 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHH
Q 012231 68 AAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKP-KGDEAAKRF 114 (468)
Q Consensus 68 ~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~-ksE~kik~L 114 (468)
..+.+.+++ .|=.+++.+...|..++.++.++...++ ..++.|+.|
T Consensus 485 ~~k~~~~~~-~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql 531 (592)
T 1f5n_A 485 KEKEIEVER-VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL 531 (592)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454443 4445567777777777777666554332 233444443
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.42 E-value=11 Score=32.04 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSST-------------PDVAAQKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~-------------~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
+..+|..|+.+...|..+++.|-..|+..... ...-+.-..+..+..+..|+.++..|+.+.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777777652211 111122333445566777777777776544
No 30
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=72.16 E-value=31 Score=28.80 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012231 77 LEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 77 rkKL~eLE~ql~eLkkKq~e~ 97 (468)
.+|++.++.++-.+...+.+.
T Consensus 50 ~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 50 EKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 31
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=70.01 E-value=2 Score=42.59 Aligned_cols=17 Identities=35% Similarity=1.095 Sum_probs=14.9
Q ss_pred CCCCCcccCCcccCCCCC
Q 012231 375 SCGTSCGCAANKCTNREL 392 (468)
Q Consensus 375 ~c~~~c~c~~~kc~n~~~ 392 (468)
-|++.|+|.+ .|.||..
T Consensus 118 EC~~~C~C~~-~C~Nr~~ 134 (300)
T 2r3a_A 118 ECNSRCQCGP-DCPNRIV 134 (300)
T ss_dssp CCCTTSSCCT-TCTTCSG
T ss_pred eCCCCCCCCC-cCCCccc
Confidence 5999999986 7999985
No 32
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=69.97 E-value=37 Score=30.73 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTP-DV----AAQKLKEAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~-~~----~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
+.+..+|...|..++.++..|+-+..++++++...+..+ +. ...-++..|.++.+.+..+...|...+.....
T Consensus 28 e~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999998887544221 12 23567788888888888888777766655443
No 33
>1m0j_A Metallothionein MT_NC; cadmium thiolate-cluster, metal binding protein; NMR {Notothenia coriiceps} SCOP: g.46.1.1
Probab=69.75 E-value=0.96 Score=30.41 Aligned_cols=23 Identities=48% Similarity=1.363 Sum_probs=15.0
Q ss_pred cccCCCCccccCccccccCCCCCCCCcccCCcccC
Q 012231 354 CSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCT 388 (468)
Q Consensus 354 c~csk~s~ckt~~c~c~~~~~~c~~~c~c~~~kc~ 388 (468)
|+|++.++|. ||.+|.|..-+|+
T Consensus 3 C~C~~~gsC~------------C~~sCkC~~C~Ct 25 (28)
T 1m0j_A 3 CECSKSGTCN------------CGGSCTCTNCSCK 25 (28)
T ss_dssp CHHHHHSSCC------------CSSSCCSSSCCCT
T ss_pred ccCCCCCccc------------CCCccccCCccCc
Confidence 6666666664 6677777766665
No 34
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=69.62 E-value=1e+02 Score=32.86 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHH
Q 012231 72 LKEAHLEKMNALEGQVLELKKKLELQF-QFSTQKPKGDEAAKRFQDEIQK 120 (468)
Q Consensus 72 LkeeyrkKL~eLE~ql~eLkkKq~e~~-rLlK~k~ksE~kik~L~~EIq~ 120 (468)
++++|+++|.+++.+-..++....... +=...+...+..+.+.+.++..
T Consensus 28 aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlak 77 (497)
T 3iox_A 28 AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887776665443322 2222334444444444444433
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.40 E-value=1e+02 Score=31.29 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012231 134 LEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLES 198 (468)
Q Consensus 134 EEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~ 198 (468)
.-..+.....+..+.|..+.++..-..+.++.+|+..+++.+.++.-=...++-++-+++++-..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 33444444455555566666666666666666666666666666655555555566666666543
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.80 E-value=61 Score=28.63 Aligned_cols=52 Identities=23% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 012231 109 EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALN 171 (468)
Q Consensus 109 ~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~ 171 (468)
..+..+..||..+|..=+.+.-++ ....+++..|+++...-+.++.+|+...
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~-----------e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKA-----------ESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666665444432222 2233455555555555555566665543
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=68.46 E-value=11 Score=30.92 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQD 116 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~ 116 (468)
|.+|..+|..+..++..+..++.|....-++-..|..++... =..+|..+..|++-..+.. | .+..-+.+|..|..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~-R~~~E~d~~~LrkdvD~a~-l--~r~dLE~kvesL~e 77 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-REEAENTLQSFRQDVDNAS-L--ARLDLERKVESLQE 77 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHH-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHH-H--HHHHHHHHHHHHHH
Confidence 456777777777777777776654311111222233222222 2467888888887765532 2 22445777888888
Q ss_pred HHHHHHH
Q 012231 117 EIQKLRV 123 (468)
Q Consensus 117 EIq~MK~ 123 (468)
||.-||+
T Consensus 78 El~fLkk 84 (86)
T 3swk_A 78 EIAFLKK 84 (86)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8877763
No 38
>1dme_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmf_A 1j5m_A
Probab=68.31 E-value=3.6 Score=27.44 Aligned_cols=23 Identities=35% Similarity=1.187 Sum_probs=18.2
Q ss_pred cCccccccCCCCCCCCcccCCcccC
Q 012231 364 TSKCECRVSGGSCGTSCGCAANKCT 388 (468)
Q Consensus 364 t~~c~c~~~~~~c~~~c~c~~~kc~ 388 (468)
..+|.|. .|.|-+||-|.+..|+
T Consensus 6 ~dkceC~--eG~CK~GC~ctscrC~ 28 (28)
T 1dme_A 6 NDKCVCQ--EGGCKAGCQCTSCRCS 28 (28)
T ss_dssp TSCCCTT--TTCCCSCCCCTTSCCC
T ss_pred CCeeeec--CCCcccCceecccccC
Confidence 4688875 5789999999887774
No 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.75 E-value=26 Score=30.29 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 77 LEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRL 141 (468)
Q Consensus 77 rkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~ 141 (468)
..+...|..++-.++.|. ...+..+-..+..|+.||..++..+-.|..++|+=-.....
T Consensus 9 ~~~~~~L~~E~e~~k~K~------~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 9 QADNQRLKYEVEALKEKL------EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 344444555555555443 33445566788999999999999999999888864443333
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.77 E-value=74 Score=32.17 Aligned_cols=77 Identities=10% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhcccchHHHHH
Q 012231 41 EQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL--------QFQFSTQKPKGDEAAK 112 (468)
Q Consensus 41 E~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e--------~~rLlK~k~ksE~kik 112 (468)
++-+..++.+.+.++..+.. ..+........+++|.++++.+.+++++-.. +.-|.+...+.+.+|+
T Consensus 372 eeal~~~~~~i~~~l~~~~~-----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRA-----VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE 446 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH-----HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666655432 1233344444555555555555555544322 2334444444455555
Q ss_pred HHHHHHHHHH
Q 012231 113 RFQDEIQKLR 122 (468)
Q Consensus 113 ~L~~EIq~MK 122 (468)
.|++||..+-
T Consensus 447 ~~~~~~~~~~ 456 (471)
T 3mq9_A 447 ELEGEITTLN 456 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 41
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=65.36 E-value=22 Score=30.63 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc----CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASV----SS-TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~----ss-~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
-..|.+|+.++...+.++....+.|... .. .++.+..-+ ..++--++.|+.+|.+|++...+..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl-~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTL-QNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999998888887777532 11 233344444 6777778888888888888776644
No 42
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=64.74 E-value=2.9 Score=39.68 Aligned_cols=39 Identities=26% Similarity=0.635 Sum_probs=31.1
Q ss_pred cccccCCC--Ccccc-CccccccCCCCCCC-CcccCCcccCCCC
Q 012231 352 VCCSCSKK--SSCKT-SKCECRVSGGSCGT-SCGCAANKCTNRE 391 (468)
Q Consensus 352 ~cc~csk~--s~ckt-~~c~c~~~~~~c~~-~c~c~~~kc~n~~ 391 (468)
.-|.|... ..|.. ..|.+|.+.--|++ .|+|.+ .|.||.
T Consensus 43 ~~C~C~~~~~~~C~~~~~C~nr~~~~EC~~~~C~c~~-~C~Nr~ 85 (232)
T 3ooi_A 43 PRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGG-RCQNQC 85 (232)
T ss_dssp CCCSCCTTSSSTTCTTSCCHHHHTTBCCCTTTCTTGG-GCCCCH
T ss_pred CcccccCCCCCCCCCCCCCcCcCceeEeCCCCCCCCC-CcCCcc
Confidence 45788654 35763 68999999999999 699975 799995
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.12 E-value=58 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 76 HLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 76 yrkKL~eLE~ql~eLkkKq~ 95 (468)
..+|++.++.++-.+.....
T Consensus 49 L~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444443
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.77 E-value=63 Score=26.55 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKVASVSS-T----------PDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss-~----------~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
...|..+|..|...+..+..++..+...+..... . .......+-..|...+..+..++..|......
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~ 89 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSE 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888887777777655543221 0 23333455577778888887777777755443
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.84 E-value=1.5e+02 Score=30.62 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012231 156 ENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRK 200 (468)
Q Consensus 156 e~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk 200 (468)
....+++.+-.+-..-+++-.+||++..+-..--+.|+..+..+.
T Consensus 103 q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 103 KANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQL 147 (390)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334455566666666677777777777777776666666655554
No 46
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=61.55 E-value=5 Score=30.52 Aligned_cols=37 Identities=35% Similarity=0.967 Sum_probs=30.2
Q ss_pred ccccc------CCCCccccCccccccCCCCCCCCcccCCcccCCCC
Q 012231 352 VCCSC------SKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNRE 391 (468)
Q Consensus 352 ~cc~c------sk~s~ckt~~c~c~~~~~~c~~~c~c~~~kc~n~~ 391 (468)
-+|.| ...-+|..+-|+|-..|.+|. .|.|. -|-|--
T Consensus 5 ~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~--GCkNPh 47 (52)
T 2lua_A 5 PKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCV--GCKNPH 47 (52)
T ss_dssp CCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCS--SCCCSC
T ss_pred cccccCcccCCCCceeEcCCccceecCCCccC-CCEec--CcCCCC
Confidence 46888 445579999999999999996 69998 588854
No 47
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=61.03 E-value=33 Score=28.04 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELRFKVASV----SS-TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~----ss-~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
.|.+|+.++...+.++......|... .. .++.+..-+ ..++--++.|+.+|.+|++...+..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~-~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTL-QSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888887777666432 11 233333444 5667777888888888887776643
No 48
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.60 E-value=1.1e+02 Score=27.81 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccchHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ----FSTQKPKGDE 109 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r----LlK~k~ksE~ 109 (468)
+.++...+.++..|+.+...+-.+|.++.. -.+.|.+|...++.+|..|..+..+-.. ..+.-.+-+.
T Consensus 34 EERae~aE~k~~eLEeeL~~v~~nlKsLE~--------seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 34 EERAELSEGKSAELEEELKTVTNNLKSLEA--------QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444433211 1233444444455555555544444321 1222333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 110 AAKRFQDEIQKLRVQKVQLQCKLK 133 (468)
Q Consensus 110 kik~L~~EIq~MK~qKVqL~KKMK 133 (468)
.|..|..+|..-|..-..+..-|.
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555555444444444
No 49
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.91 E-value=2e+02 Score=30.82 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012231 127 QLQCKLKLEAVQFRLC-----KASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKA 201 (468)
Q Consensus 127 qL~KKMKEEsekfR~~-----k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk~ 201 (468)
+|.++..||..+.++| ....++|..+++.|.-.-...+.+++....+-..|+.-.--++.|+|+.|.+++..+..
T Consensus 295 elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~ 374 (551)
T 2b5u_A 295 QVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQ 374 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhh
Confidence 6788999999999999 56667777777777776655555555433333477777667889999999999887664
No 50
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=57.25 E-value=3.3 Score=28.10 Aligned_cols=21 Identities=33% Similarity=0.824 Sum_probs=15.5
Q ss_pred cccCccccccCCCCCCCCcccCCc
Q 012231 362 CKTSKCECRVSGGSCGTSCGCAAN 385 (468)
Q Consensus 362 ckt~~c~c~~~~~~c~~~c~c~~~ 385 (468)
|..++| ...-+||.||.|-|+
T Consensus 2 cegkqc---glfrscgggcrcwpt 22 (33)
T 2knp_A 2 CEGKQC---GLFRSCGGGCRCWPT 22 (33)
T ss_dssp CCSEEE---ETTCCCCSSCCEEEC
T ss_pred Cccccc---ceeeccCCceeeccc
Confidence 444555 367799999999875
No 51
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=57.16 E-value=35 Score=29.64 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFKVASV----SS-TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQ 99 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~----ss-~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~r 99 (468)
|.+|+.+|...+.++......|... .. .++.+..-+ ..++--++.|+.+|.+|++...+...
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl-~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTL-TDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888777777666432 11 233344444 67777788888888888888777654
No 52
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=56.29 E-value=58 Score=27.55 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 36 RVHELEQENDTLKREIEELRFKVASV----SS-TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 36 KL~eLE~ei~~lq~ERDell~~L~~~----ss-~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
.|.+|+.++...+.++....+.|... .. .++.+..-+ ..++--++.|+.+|.+|++...+...-
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~-~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTL-QSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778888888888777777666432 11 233344444 667777888888888888887775543
No 53
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=55.71 E-value=54 Score=26.51 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELK 91 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLk 91 (468)
.|.++..|+.-+..||.-.-+||+++.+ ...||+ +||..||.++..+.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~s-------sQ~KLK----qRit~LE~~~~~~~ 52 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYES-------MQQKLK----QRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHhcccC
Confidence 6889999999999999999999999873 445664 88888998887654
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.25 E-value=1.3e+02 Score=27.74 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 012231 107 GDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNE----YELHLLSALNQRL 174 (468)
Q Consensus 107 sE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q----~ei~kLe~~~~kQ 174 (468)
-+.+|..|..||..+|..=.++.--++.=.++ |..|.|+.--.+ |+++.|+..+++-
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek-----------l~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDM-----------LNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34477788888888887666655555554444 344444555555 6666666666553
No 55
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=53.88 E-value=9.6 Score=25.57 Aligned_cols=17 Identities=35% Similarity=1.232 Sum_probs=11.5
Q ss_pred CCCCCCCCcccCCcccC
Q 012231 372 SGGSCGTSCGCAANKCT 388 (468)
Q Consensus 372 ~~~~c~~~c~c~~~kc~ 388 (468)
.|=.||++|+|.+-+|.
T Consensus 11 ~~CkCgs~C~C~~C~C~ 27 (28)
T 1qjl_A 11 NGCKCGSGCSCTEGNCA 27 (28)
T ss_dssp TTCCTTSCCCCBTTBCC
T ss_pred CCCccCCCcccCCcccc
Confidence 34457888888776663
No 56
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.87 E-value=1.4e+02 Score=27.59 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAK 112 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik 112 (468)
|..||..||.++..+.. .+..+-. .....+|..-++.+.++.++..+.+|+-+.. .|...+..-+..+.
T Consensus 4 ~neKi~~LekQL~E~n~---kLk~EsE-----~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~---~L~~~k~~Leke~~ 72 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEAND---LLRTESD-----TAVRLRKSHTEMSKSISQLESLNRELQERNR---ILENSKSQTDKDYY 72 (168)
T ss_dssp ------CTHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH---HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 66666666665554432 1112211 1245566777888888888888877775543 33334444445555
Q ss_pred HHHHHHHHHHH
Q 012231 113 RFQDEIQKLRV 123 (468)
Q Consensus 113 ~L~~EIq~MK~ 123 (468)
.|+..+..=++
T Consensus 73 ~LQa~L~qEr~ 83 (168)
T 3o0z_A 73 QLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 57
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=53.22 E-value=1.1e+02 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASV 61 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ 61 (468)
+.|.+|.+.-..+-.+..+.+++-..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ri~~aig~~ 32 (114)
T 2xzr_A 3 QIEDKIEEILSKIYHIENEIARIKKLIGAI 32 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 578899999999999999988887766543
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.19 E-value=62 Score=33.49 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSS----------TPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss----------~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
|+....+.=..+...|..|..+++.+...-.++.. ..-..+.....-|-+=..+|+.+|..|+.+..++.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455566666666666555433221100 00111122223334444566666666666655543
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.98 E-value=70 Score=25.83 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSS--TPDVAAQKLKEAHLEKMNALEGQVLEL 90 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss--~~~~~~~KLkeeyrkKL~eLE~ql~eL 90 (468)
.-.+.|..|+.+|..|+.++..|-..|+...- .+.+....+. .++.+++.+|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~----~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVL----ADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHH----HHHHHHHHHHHHH
Confidence 34567899999999999999999999986432 2333334443 4444455444443
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.79 E-value=1.1e+02 Score=26.29 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQ-FQFSTQKPKGDEAAKRFQDEIQ 119 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~-~rLlK~k~ksE~kik~L~~EIq 119 (468)
.++++.++.|+.+|..++...... ..|.-.....+..+..++.-|.
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~ 87 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIG 87 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777665544332 2233333334444444333333
No 61
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=51.88 E-value=51 Score=24.33 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQ 86 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~q 86 (468)
.|.++..||.-+..+|.-.-+|++++. ....||+ +||..||.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~-------ssq~KlK----qRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYN-------ATQMKMK----QRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----HHHHHHHhc
Confidence 588999999999999999999999886 3345664 777777765
No 62
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.88 E-value=51 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.280 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012231 26 AVDDKEHYEKRVHELEQENDT 46 (468)
Q Consensus 26 ~q~mk~qYEkKL~eLE~ei~~ 46 (468)
+..|+.|||.-...-..++..
T Consensus 11 l~eiRaQYE~ia~knr~EaE~ 31 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEE 31 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 456888898877666555544
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.52 E-value=1.2e+02 Score=25.88 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQF-QFSTQKPKGDEAAKRFQDEIQK 120 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~~-rLlK~k~ksE~kik~L~~EIq~ 120 (468)
.++++.++.|+.+|..|+....... .|.-.....+..+..++.-|..
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~ 86 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAE 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776665544432 2333333444444444444433
No 64
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.49 E-value=1.1e+02 Score=25.00 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhhcc
Q 012231 32 HYEKRVHELEQENDTLKREIEELR---FKVASV 61 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell---~~L~~~ 61 (468)
.|..++..|..++..++.++.++- .+|..+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l 49 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIESL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678888888888887777754 445443
No 65
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.97 E-value=5.9e+02 Score=33.24 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012231 163 ELHLLSALNQRLKLVLQRKTKEAFEATKRLKEL 195 (468)
Q Consensus 163 ei~kLe~~~~kQ~~VLKRKtEEaaAa~KRLK~l 195 (468)
++..++........-|..+.++++.+..+|..+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATY 2047 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444555555555555555554443
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.29 E-value=2.1e+02 Score=30.86 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012231 82 ALEGQVLELKKKLELQF 98 (468)
Q Consensus 82 eLE~ql~eLkkKq~e~~ 98 (468)
+|+.+|..|+.+...+.
T Consensus 114 ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665554
No 67
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.01 E-value=79 Score=27.45 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 35 KRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELK 91 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLk 91 (468)
.-|..|..+|..|..|.+.+..+- +..-.+|+.++..|+.++..-+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~-----------q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTES-----------QRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776442 2444677788888888877755
No 68
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.79 E-value=1.2e+02 Score=27.78 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELR 55 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell 55 (468)
..|.+.|..++..|..++.+...|...|+
T Consensus 77 ~~I~~e~r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 77 QKIYDDYYTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666665555544
No 69
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.34 E-value=1.3e+02 Score=25.04 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012231 75 AHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 75 eyrkKL~eLE~ql~eLkkKq~ 95 (468)
..+.+...++.+|..|+++..
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 334455556666666655543
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.94 E-value=3e+02 Score=29.66 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012231 167 LSALNQRLKLVLQRKTKEAFEATKRLKELLESRK 200 (468)
Q Consensus 167 Le~~~~kQ~~VLKRKtEEaaAa~KRLK~lL~~rk 200 (468)
+..+. .+-.|||.-.++.-.-.+||-.....+-
T Consensus 126 VdnQl-snIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 126 VIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 4445666666666666666665555443
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.81 E-value=2e+02 Score=26.09 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Q 012231 156 ENRRNEYELHLLSALN-QRLKLVLQRKTKEAFEATKRL 192 (468)
Q Consensus 156 e~RK~q~ei~kLe~~~-~kQ~~VLKRKtEEaaAa~KRL 192 (468)
+.--.+..+.+|+..| .--+..+++|..||.+.|..+
T Consensus 111 q~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444555544 234566888888888887654
No 72
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=39.28 E-value=16 Score=30.82 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.9
Q ss_pred CccchhhhhHHHHHHHHHHHHhhcchhHHH
Q 012231 276 VKDSEFSDLKEEVARLSNLISQMAVPKAEI 305 (468)
Q Consensus 276 ~kd~e~~elkE~~~~l~~~l~~~e~~k~e~ 305 (468)
.-|++|+||+++||.|...-.+-|.+..+|
T Consensus 49 L~E~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 49 LGEFRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999988888887664
No 73
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=37.87 E-value=2e+02 Score=24.98 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 24 SPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 24 ~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
++++.++.+-+.-+..-|..+..|+.|.+.-+ .+++..|..+|++++.....-+++....
T Consensus 39 ~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~--------------ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 39 HELEKLRRESENSKKTFEEKKSILKAELERKM--------------AEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655543 3556778888888887776666655543
No 74
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.40 E-value=8.3e+02 Score=31.94 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012231 34 EKRVHELEQEND 45 (468)
Q Consensus 34 EkKL~eLE~ei~ 45 (468)
.+|-.+++..+.
T Consensus 1909 ~~K~~el~~~~~ 1920 (3245)
T 3vkg_A 1909 NEKRDQLEEEQL 1920 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 75
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=36.12 E-value=1.5e+02 Score=25.08 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKR---EIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLEL 90 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~---ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eL 90 (468)
.||..|.+|+.=+..|+. -+++.+..+. .--+|...-+.+|...+.+|..|
T Consensus 31 sFEeal~eLEeIV~~LE~gel~LEesl~lye--------eG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTLPLEQSLSAYR--------RGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999998888875 4666666653 33467678889999999998888
No 76
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.59 E-value=1.7e+02 Score=23.87 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcchhHHHhhh
Q 012231 244 MAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHN 308 (468)
Q Consensus 244 L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~~k~e~~~~ 308 (468)
+..++..+...+.++...+..|.++...+........|.+...++..|...+..+..+..++..+
T Consensus 29 l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~ 93 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERE 93 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665555688876444432222234444444555555555555444444433
No 77
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.75 E-value=2.1e+02 Score=24.17 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 012231 23 QSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQ-FQFS 101 (468)
Q Consensus 23 ~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~-~rLl 101 (468)
+..|..++. .|..|+.+...+..|...|...|. .....+..-+.....++.+|-+|...+=+. ..|+
T Consensus 4 ~~~~e~lre----~l~~le~~~~~~~~e~~~L~~~l~--------eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MV 71 (97)
T 2eqb_B 4 GSNYNQLKE----DYNTLKRELSDRDDEVKRLREDIA--------KENELRTKAEEEADKLNKEVEDLTASLFDEANNMV 71 (97)
T ss_dssp -CCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655 456788888888899888888875 223444566777888888888888777443 3333
Q ss_pred h----cccchHHHHHHHHHHHHH
Q 012231 102 T----QKPKGDEAAKRFQDEIQK 120 (468)
Q Consensus 102 K----~k~ksE~kik~L~~EIq~ 120 (468)
. .....+.+...|+..|.+
T Consensus 72 a~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 72 ADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 333445555555555543
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=34.11 E-value=1.9e+02 Score=23.51 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
....+|..+|.+...|+.....+-..|+.. -.....++.+..+=+..|-.+|.+|.--....++|
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s----~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEA----RAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 334455555555555555555555444421 12223344444444555555555555444444443
No 79
>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}
Probab=33.87 E-value=33 Score=26.06 Aligned_cols=30 Identities=37% Similarity=1.120 Sum_probs=19.5
Q ss_pred cccccCCCCccccCccccccC-----------CCCCCCCcccC
Q 012231 352 VCCSCSKKSSCKTSKCECRVS-----------GGSCGTSCGCA 383 (468)
Q Consensus 352 ~cc~csk~s~ckt~~c~c~~~-----------~~~c~~~c~c~ 383 (468)
..|+|.- -|.-+-|-|... +=.||++|.|.
T Consensus 4 ~tC~CGE--HCgCnPCtC~k~~~~sG~g~rka~C~CG~~C~Ca 44 (53)
T 2kak_A 4 TTCGCGE--HCGCNPCACGREGTPSGRANRRANCSCGAACNCA 44 (53)
T ss_dssp SCBTTTB--CCTTSCCTTCCCCCCCCSSSSCSCCCCCSSCCCH
T ss_pred ccccCCC--cccccCccCCCccccccccccccccccCCCcccc
Confidence 4566665 455556666543 24699999997
No 80
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=33.76 E-value=1.5e+02 Score=31.63 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 67 VAAQKLKEAHLEKMNALEGQVLELKKKLELQ 97 (468)
Q Consensus 67 ~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~ 97 (468)
..+.+-+.+|+.+|..++.+....+..+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEA 361 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556777888888887777666665544
No 81
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.69 E-value=1.1e+02 Score=25.75 Aligned_cols=49 Identities=29% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 41 EQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLE 89 (468)
Q Consensus 41 E~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~e 89 (468)
|.+...++.|.++|-+.|-.-+..=.....+-...++.|...|+.+|.+
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777788888777765211100112233334455666666666554
No 82
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.45 E-value=2.1e+02 Score=30.30 Aligned_cols=71 Identities=23% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcchhH
Q 012231 224 LEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKA 303 (468)
Q Consensus 224 lEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~~k~ 303 (468)
++.++...+.++.+...++.|..+++.+..+...++..+ .| +.+|.+++..|..-|..++.+..
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~-----~~-----------~~~l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK-----ED-----------AKDLIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CC-----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----cc-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888999999998888888888776655433 12 45666666777777777777666
Q ss_pred HHhhhhh
Q 012231 304 EIIHNKS 310 (468)
Q Consensus 304 e~~~~~k 310 (468)
++..+..
T Consensus 96 ~~~~~~~ 102 (485)
T 3qne_A 96 EADKNLR 102 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.30 E-value=2e+02 Score=23.43 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccchHHHHHHHHHHHHHHHHH
Q 012231 70 QKLKEAHLEKMNALEGQVLELKKKLEL----QFQFSTQKPKGDEAAKRFQDEIQKLRVQ 124 (468)
Q Consensus 70 ~KLkeeyrkKL~eLE~ql~eLkkKq~e----~~rLlK~k~ksE~kik~L~~EIq~MK~q 124 (468)
.||+...+-++.....+|..|++-+.+ +.+|..+-.+-+..-..|..+|..|+.-
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666677777777777777665 3555555555555556666666655543
No 84
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.70 E-value=1.9e+02 Score=28.99 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
.+-|..|+.++..+.++++++...|+.... . +.+..|+.+++.|+..+.++..+...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~k~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPE-----N----KKAHNKRDNLQQQLDANEQKIEEGKRL 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----C----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-----c----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888764321 1 222466777777777777766654433
No 85
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.46 E-value=2.4e+02 Score=23.94 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=52.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 17 SSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 17 ~~~~~~~~d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
|.+|.+.+-|+.--.....+|..+..+...++.|++.+...+. +-..|...+... -..+|..|..|++-..+
T Consensus 9 ~~~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~e-------dfk~KyE~E~~~-r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 9 SHMSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM-------RLREKLQEEMLQ-REEAENTLQSFRQDVDN 80 (119)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHH-HHHHHHHHHHhhhcccH
Confidence 4566677777776677888888888888888888888877764 222233222222 23456666666554433
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHH
Q 012231 97 QFQFSTQKPKGDEAAKRFQDEIQKLR 122 (468)
Q Consensus 97 ~~rLlK~k~ksE~kik~L~~EIq~MK 122 (468)
. -|. +..-+.+|..|..||.-||
T Consensus 81 ~-~l~--r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 81 A-SLA--RLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp H-HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred H-HHH--HHHHHHHHHHHHHHHHHHH
Confidence 1 111 1223445555555555544
No 86
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.69 E-value=2.6e+02 Score=29.03 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccccccccccCCCCCccchhhhhHHHHHHHHHHHHhhcchhH
Q 012231 224 LEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKA 303 (468)
Q Consensus 224 lEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~~~~~~~~l~dke~~c~~kd~e~~elkE~~~~l~~~l~~~e~~k~ 303 (468)
++.++...+.++.+...++.|-.+++.+..+...++..+ . +..+|++++..|..-+..++.+..
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----~-----------~~~~l~~~~~~~~~~~~~~~~~~~ 93 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----E-----------PVDELLAKSREIVKRIGELENEVE 93 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----C-----------CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----c-----------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788888999999998888888888776654433 1 245677777777777777777777
Q ss_pred HHhhhhhhh
Q 012231 304 EIIHNKSEV 312 (468)
Q Consensus 304 e~~~~~k~~ 312 (468)
++..+....
T Consensus 94 ~~~~~~~~~ 102 (455)
T 2dq0_A 94 ELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
No 87
>4mt2_A Metallothionein isoform II; 2.00A {Rattus rattus} SCOP: g.46.1.1 PDB: 2mrt_A 1mrt_A 1mhu_A 1dfs_A 2mhu_A 1dft_A 2mrb_A
Probab=30.45 E-value=49 Score=25.83 Aligned_cols=35 Identities=37% Similarity=1.047 Sum_probs=21.5
Q ss_pred CCcccccCCCCccccCccccccCCCCCCCCcccCCcccCC
Q 012231 350 SGVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTN 389 (468)
Q Consensus 350 ~~~cc~csk~s~ckt~~c~c~~~~~~c~~~c~c~~~kc~n 389 (468)
.|+-|+|.. +||-+.|.|..-..+| |+|-|.-|++
T Consensus 10 ~ggsC~C~~--sCkCk~CkCtsCKKsc---CsCCP~gCak 44 (62)
T 4mt2_A 10 TDGSCSCAG--SCKCKQCKCTSCKKSC---CSCCPVGCAK 44 (62)
T ss_dssp SSSCCCCTT--CSCCSSCCCTTCCCCS---STTSCTTCTT
T ss_pred CCCcccCCC--ccccCCcccCcccccc---ccccccchhH
Confidence 355666654 6777778777666655 5555555554
No 88
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=29.90 E-value=1.8e+02 Score=22.88 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 41 EQENDTLKREIEELRFKVASVSSTPDV-AAQKLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 41 E~ei~~lq~ERDell~~L~~~ss~~~~-~~~KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
-.+...++.|+-.|..++.++|+.+.= .=.|| ++++.-|-.+|..+.+.+
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL----~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKN----NRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 345678888999999999998886322 22445 456666666666665544
No 89
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.23 E-value=5.3e+02 Score=27.15 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 012231 80 MNALEGQVLELKKKL 94 (468)
Q Consensus 80 L~eLE~ql~eLkkKq 94 (468)
+.+++..|.+.....
T Consensus 137 i~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 137 RKDNDIILSEYNTEM 151 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHH
Confidence 333333333333333
No 90
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.53 E-value=2.6e+02 Score=23.33 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCC-CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 27 VDDKEHYEKRVHELEQENDTLKREIEELRFKV---ASVSS-TPDVA-AQKLKEAHLEKMNALEGQVLELKKKLELQF 98 (468)
Q Consensus 27 q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L---~~~ss-~~~~~-~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~ 98 (468)
+.=+..-..+|.+|+.+|......|+-|..-. ..... .+... ..+| .++..+|..|+.++..++.-+.+..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L-~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQI-AETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44466778888888888888888888775332 22111 12222 3344 6788888888888888877766653
No 91
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.08 E-value=1.2e+02 Score=24.02 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 71 KLKEAHLEKMNALEGQVLELKKKL 94 (468)
Q Consensus 71 KLkeeyrkKL~eLE~ql~eLkkKq 94 (468)
..++-....|.+||.+|.+|....
T Consensus 22 afReRK~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777888888888887643
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.80 E-value=2.5e+02 Score=22.95 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHH
Q 012231 108 DEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLL 167 (468)
Q Consensus 108 E~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kL 167 (468)
-..|.-|+-||..+|.....|.... +..+.-......|+.||+.+..--+..|..|
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~----~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEV----QNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888888877765433 3333344445566666666655555444444
No 93
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.74 E-value=1.6e+02 Score=30.14 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 012231 109 EAAKRFQDEIQKLR 122 (468)
Q Consensus 109 ~kik~L~~EIq~MK 122 (468)
..-+.|.++|++||
T Consensus 45 ~~rr~l~n~~~elk 58 (403)
T 4etp_A 45 TVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 34455666666665
No 94
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.70 E-value=2.6e+02 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 41 EQENDTLKREIEELRFKVASVSSTPDV-AAQKLKEAHLEKMNALEGQVLELKKKLEL 96 (468)
Q Consensus 41 E~ei~~lq~ERDell~~L~~~ss~~~~-~~~KLkeeyrkKL~eLE~ql~eLkkKq~e 96 (468)
-.+...++.|+-+|..++.++++.+.= .=.|| ++++.-|-.+|..+.+.+..
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL----~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKN----NRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999988876322 22455 46666677777666665544
No 95
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=27.13 E-value=1.5e+02 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKKLELQF-QFSTQKPKGDEAAKRFQDEIQ 119 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkKq~e~~-rLlK~k~ksE~kik~L~~EIq 119 (468)
++|+.|+..=-.++..++.+.-+.. .-.+++++.|+.|.+|+.||.
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788776554444444444443322 223345555555555555554
No 96
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.72 E-value=1.6e+02 Score=24.36 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012231 74 EAHLEKMNALEGQVLELKKK 93 (468)
Q Consensus 74 eeyrkKL~eLE~ql~eLkkK 93 (468)
..|...|..|+.++..++..
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655543
No 97
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.68 E-value=1.7e+02 Score=24.18 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHH
Q 012231 31 EHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALE 84 (468)
Q Consensus 31 ~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE 84 (468)
..-+.+|..|+.++..++.+..++.+.|.+.. ...+-..|-++|.+++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~------~~~~~~~hI~~Lh~YN 51 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRD------AKQTVQKHIDLLHTYN 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------HHHHHHHHHHHHHHHh
Confidence 34567888888888888888888888776421 2344456666666553
No 98
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=26.13 E-value=42 Score=22.33 Aligned_cols=7 Identities=71% Similarity=1.559 Sum_probs=5.0
Q ss_pred cCCcccC
Q 012231 382 CAANKCT 388 (468)
Q Consensus 382 c~~~kc~ 388 (468)
|..+||+
T Consensus 22 Cs~nkCt 28 (28)
T 1y29_A 22 CSHNKCT 28 (28)
T ss_dssp BSSSCBC
T ss_pred cccCccC
Confidence 6677875
No 99
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.51 E-value=6.6e+02 Score=26.75 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 012231 73 KEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQ 129 (468)
Q Consensus 73 keeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~EIq~MK~qKVqL~ 129 (468)
..+|+.+|...+.+|...++.-.+ .++..+..+...+.+=..+++....+-
T Consensus 4 ~a~yq~~la~yq~elarvqkana~------aka~Ye~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANAD------AKAAYEAAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578999999999999999987766 456666667666665555555554443
No 100
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.92 E-value=1.7e+02 Score=21.30 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKV 58 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L 58 (468)
-...+.+..+||+.|..|+.|-.-|.+-|
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34455666666666666666655554433
No 101
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.74 E-value=4.1e+02 Score=24.02 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQD 116 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE~kik~L~~ 116 (468)
...|+..+..+..+.......+.... .....+ ..+...+.....++..|.....+ -...+...+.....++.
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE----~~r~~~-~~l~~~~~~~~~e~~~L~~~l~~---E~~~R~~aE~~~~~ie~ 86 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYN----QLKEDY-NTLKRELSDRDDEVKRLREDIAK---ENELRTKAEEEADKLNK 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHH-HHHHTHHHHHHHHHHHHHHHHHH---HHHHHHHHHTHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44556655555555554433333211 111111 11223344445555554433332 23344556777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012231 117 EIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLV 177 (468)
Q Consensus 117 EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~V 177 (468)
||.+|=+.=-.=-.+|=.+. |.....-++.+.+|++...-.+..+..|+.+-..=+.|
T Consensus 87 ElEeLTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 87 EVEDLTASLFDEANNMVADA---RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777654333333333332 33333445555566666665555555555554443333
No 102
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.69 E-value=2.3e+02 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 33 YEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 33 YEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
+..++..|..+...++.+.+++...|.
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665554
No 103
>4mt2_A Metallothionein isoform II; 2.00A {Rattus rattus} SCOP: g.46.1.1 PDB: 2mrt_A 1mrt_A 1mhu_A 1dfs_A 2mhu_A 1dft_A 2mrb_A
Probab=23.46 E-value=49 Score=25.85 Aligned_cols=15 Identities=47% Similarity=1.077 Sum_probs=8.1
Q ss_pred CCCCcccCCcccCCC
Q 012231 376 CGTSCGCAANKCTNR 390 (468)
Q Consensus 376 c~~~c~c~~~kc~n~ 390 (468)
|+.+|-|..-+|+.-
T Consensus 16 C~~sCkCk~CkCtsC 30 (62)
T 4mt2_A 16 CAGSCKCKQCKCTSC 30 (62)
T ss_dssp CTTCSCCSSCCCTTC
T ss_pred CCCccccCCcccCcc
Confidence 555555555555543
No 104
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.05 E-value=2.2e+02 Score=20.68 Aligned_cols=43 Identities=37% Similarity=0.533 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 37 VHELEQENDTLKREIEELRFK-VASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 37 L~eLE~ei~~lq~ERDell~~-L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~ 95 (468)
+.+||.++..++.|-+.|-.. |. .+.| +.-|+++|+.|+++..
T Consensus 5 vaqlenevaslenenetlkkknlh---------kkdl-------iaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLH---------KKDL-------IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHHHhccc---------HHHH-------HHHHHHHHHHHHHHhc
Confidence 456777777777776655422 21 1122 3457888888888753
No 105
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=23.03 E-value=6.2e+02 Score=25.89 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhc
Q 012231 35 KRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLEL-----------QFQFSTQ 103 (468)
Q Consensus 35 kKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e-----------~~rLlK~ 103 (468)
+.-..++.....+++++......|. +.+..|.+.-.+.+.-...++....+ ..++.+.
T Consensus 129 kerK~~~~~~~k~qk~l~~~~~~l~-----------KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~ 197 (486)
T 3haj_A 129 KETKEAEDGFRKAQKPWAKKLKEVE-----------AAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKC 197 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 104 KPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASL 146 (468)
Q Consensus 104 k~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~r 146 (468)
..+.+..-..+..-|+.+...+......|..=.+.|...+..+
T Consensus 198 ~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeR 240 (486)
T 3haj_A 198 KQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKR 240 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 106
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.96 E-value=2.6e+02 Score=24.50 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 40 LEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLE 95 (468)
Q Consensus 40 LE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~ 95 (468)
+..||..|-.-.|.+...++.....+|. ..+ .+|..-+..|..+|..|+.++.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~--~~i-~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAA--DKY-AELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCT--THH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888876554333 233 5677778888888888887664
No 107
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.87 E-value=1.3e+02 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012231 30 KEHYEKRVHELEQENDTLKREIEELRFKVAS 60 (468)
Q Consensus 30 k~qYEkKL~eLE~ei~~lq~ERDell~~L~~ 60 (468)
++..+.+|..|+..+...+.+++.+..+|..
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667888888888888888888887766653
No 108
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.39 E-value=4.5e+02 Score=27.21 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 34 EKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 34 EkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
..+-..|..++..|+.+|..+-.++.
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666655554
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.21 E-value=4.4e+02 Score=23.86 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 012231 127 QLQCKLKLEAVQ 138 (468)
Q Consensus 127 qL~KKMKEEsek 138 (468)
++|.++-.|+++
T Consensus 132 RWM~rk~qEAe~ 143 (152)
T 3a7p_A 132 RWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 110
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.07 E-value=1.6e+02 Score=20.68 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKVA 59 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L~ 59 (468)
|.|.|+.+|..+...|+.|..+|..-|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4778888888888888888877766554
No 111
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.29 E-value=1.8e+02 Score=20.29 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012231 32 HYEKRVHELEQENDTLKREIEELRFKV 58 (468)
Q Consensus 32 qYEkKL~eLE~ei~~lq~ERDell~~L 58 (468)
|.|.|+.+|-.+...|+.|..+|..-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 477788888888888888877776544
No 112
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=20.91 E-value=3.8e+02 Score=24.10 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012231 67 VAAQKLKEAHLEKMNALEGQVLELKKKLELQFQF 100 (468)
Q Consensus 67 ~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rL 100 (468)
+....+++.|...+..|...+..|..........
T Consensus 41 ~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 41 EAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888877765443
Done!