BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012234
         (468 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/467 (71%), Positives = 401/467 (85%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+KRD+VSWNSMI+GYSQGG YE+CK L+REM++    RP+GVTVVSVLQACGQ+ D+ F
Sbjct: 187 MTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAF 246

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GMEVH F++++ +++D+ +CNALIG+YAKCGSLDYAR L DEMS+KDEV+Y AIISG M+
Sbjct: 247 GMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLML 306

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+V+++++LF+ MK   LSTWNAVI+GLVQNNRHE VLDLVREMQA G RPNAVT+SS+
Sbjct: 307 HGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSV 366

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++FS+LKGGKEIH YA+K  Y RNIYVATAIID YAK+G+L GAQRVFD+ K RSL
Sbjct: 367 LSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSL 426

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           +IWTAIISAYA HGDA+ A+ LF+EML  GIQPDPVTFTAVL+ACAH G+VDKAW+IF +
Sbjct: 427 VIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFES 486

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YGIQP VEHYAC+VG L +ARR+SEA EFVSKMP++PSAKVWGALL+GASIS DVE
Sbjct: 487 MFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVE 546

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK VCD+LFEIEPENTGNY+IMANLYSQAGRW EAD VRE+M + GL KIPG SWIE S
Sbjct: 547 LGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETS 606

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
            GL+SF+A DT  +  E+I++IL+ LLGLMR+EG VL D ++EES Y
Sbjct: 607 EGLRSFIATDTCTENVEEIHVILKGLLGLMRDEGKVLQDMLDEESIY 653



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 30/289 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++  S+N+M+  YS    + +   LF  + +S ++    +T +    +    SD+  G E
Sbjct: 88  KNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKE 147

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH FV+ +    D+++ NALI  Y+KC  LD +R + D M+ +D VS++++ISGY   G 
Sbjct: 148 VHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGL 207

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E    L++ M                              +  SG RPN VT+ S+   
Sbjct: 208 YEDCKTLYREM------------------------------VDFSGFRPNGVTVVSVLQA 237

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +L  G E+H + V N+ + +I V  A+I  YAK G L  A+ +FD    +  + +
Sbjct: 238 CGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTY 297

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
            AIIS    HG   +++ LF  M    +       T ++    H G++D
Sbjct: 298 GAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLD 346



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 148/302 (49%), Gaps = 39/302 (12%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +I   +  + ++ + L+ +Y+K   L +AR + D++  K+  SY+A++  Y +H 
Sbjct: 45  QLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLH- 103

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                                         NRH   LDL   + +S +  N ++I+ +  
Sbjct: 104 ------------------------------NRHGDALDLFSSLASSNL-VNNISITCLLK 132

Query: 183 LFSHF--SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             S F  S++K GKE+HG+ ++  +D +++V  A+I  Y+K   L  +++VFDR   R +
Sbjct: 133 SLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDV 192

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + W ++IS Y+  G      +L+ EM++ +G +P+ VT  +VL AC  +  +    ++  
Sbjct: 193 VSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHK 252

Query: 300 -AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             +  Q  I  SV +   ++G+ ++   +  A E   +M  K     +GA++ G  + G 
Sbjct: 253 FIVDNQVEIDISVCN--ALIGLYAKCGSLDYARELFDEMSEKDEV-TYGAIISGLMLHGY 309

Query: 359 VE 360
           V+
Sbjct: 310 VD 311



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 183 LFSHFSNLK---GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           L  H + L+     K++H   +        Y+A+ ++  Y+KT  L  A+ VFD+   ++
Sbjct: 30  LLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKN 89

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
              + A++ +Y+ H     A+ LF+ + ++ +  + ++ T +L + +   L D
Sbjct: 90  TFSYNAMLISYSLHNRHGDALDLFSSLASSNL-VNNISITCLLKSLSSFTLSD 141


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/468 (71%), Positives = 400/468 (85%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDIVSWNSMIAGYSQGGFYE+CK L+R+ML+S  LRP+GVTVVSVLQAC Q++D+VF
Sbjct: 200 MHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVF 259

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM+VH F+IE  ++MD+   N+LIG+YAKCGSLDYAR L +EMS+KDEV+Y +I+SGYM 
Sbjct: 260 GMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMT 319

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HGFV+KAMDLF+ MK P LSTWNAVISGLVQNN +E +L+LV+EMQ  G RPNAVT+SSI
Sbjct: 320 HGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSI 379

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              FS FSNLKGGK IH YA++N Y  NIYVAT+IID YAK GFL GAQ VFD+ K RSL
Sbjct: 380 LPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSL 439

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+WTAIISAY+AHGDA+ A+ LF +ML+NG QPDPVTFTAVL+ACAHSG+V++AW IF+ 
Sbjct: 440 IVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDE 499

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YG QP VEHYACMVGVLSRA  +SEA EF+ KMP++P+AKVWGALL G S+SGDVE
Sbjct: 500 MFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVE 559

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGKFVCDHLF +EPENTGNY+IMANLYSQAGRW+EA+ +RE+MK+ GL KIPG SWIE S
Sbjct: 560 LGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETS 619

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAYV 468
           GGL+SF+A+D S ++SE+IY +LE LLGLMREEGY L DE++EE AY+
Sbjct: 620 GGLRSFIARDVSSERSEEIYGMLEGLLGLMREEGYTLQDELDEECAYI 667



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 38/310 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLQACG-QSSDIVF 60
           ++I SWN+M+ GYS    +     L   +L S  L  +PD  T+  VL+A      D + 
Sbjct: 98  KNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSIL 157

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EV  FV+      D+++ NALI  Y++C     AR L D M D+D VS++++I+GY  
Sbjct: 158 AKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQ 217

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF E   +L++ M                              + ++G+RPN VT+ S+
Sbjct: 218 GGFYEDCKELYRKM------------------------------LDSTGLRPNGVTVVSV 247

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G ++H + ++ + + ++    ++I  YAK G L  A+ +F+    +  
Sbjct: 248 LQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDE 307

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + + +I+S Y  HG   KA+ LF EM N    P   T+ AV+S    +   +   ++   
Sbjct: 308 VTYGSIVSGYMTHGFVDKAMDLFREMKN----PRLSTWNAVISGLVQNNCNEGILELVQE 363

Query: 301 MSGQYGIQPS 310
           M  ++G +P+
Sbjct: 364 MQ-EFGFRPN 372



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 146/322 (45%), Gaps = 46/322 (14%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           ++Q C     +    ++H  ++ S +  D ++ + LI  Y+K   L  A  + D++ DK+
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH---EAVLDLVRE 164
             S++A++ GY +H                               N H     +L  +  
Sbjct: 100 IFSWNAMLIGYSIH-------------------------------NMHVHTLNLLSSLLP 128

Query: 165 MQASGVRPNAVTISSIFSLFS-HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
             +  ++P+  TI+ +    S  F +    KE+  + +++ +D +I+V  A+I  Y++  
Sbjct: 129 SYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCD 188

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVL 282
               A+ +FDR   R ++ W ++I+ Y+  G       L+ +ML++ G++P+ VT  +VL
Sbjct: 189 EYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVL 248

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEH----YACMVGVLSRARRISEATEFVSKMP 338
            ACA +  +     +F     Q+ I+  VE     +  ++G+ ++   +  A E  ++M 
Sbjct: 249 QACAQTNDL-----VFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMS 303

Query: 339 VKPSAKVWGALLYGASISGDVE 360
            K     +G+++ G    G V+
Sbjct: 304 NKDEV-TYGSIVSGYMTHGFVD 324



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 173 NAVTISSIFSLFSHFSN---LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           N +   +   L  H S+   L+  K++H   V +    + ++A+ +I  Y+K+  L+ A 
Sbjct: 30  NGLDYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAH 89

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +VFD+   +++  W A++  Y+ H         +S      +  ++PD  T T VL A
Sbjct: 90  KVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKA 147


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/464 (67%), Positives = 384/464 (82%), Gaps = 1/464 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN+M+AGYSQGG YEECK LFR ML+S  ++P+ +T VSVLQAC QS+D+ F
Sbjct: 169 MPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTF 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+EVH FV ES IKMD+ + NA+IG+YAKCG LDYAR L +EM +KD ++Y ++ISGYMV
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMV 288

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HGFV +AMDLF+  +RP L TWNAVISGLVQNNR E  +D+ R MQ+ G RPN VT++SI
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASI 348

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +FSHFS LKGGKEIHGYA++N YDRNIYVATAIID+YAK G+LHGAQ VFD+ KGRSL
Sbjct: 349 LPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSL 408

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT+IISAYA HGDA+ A+SLF EML NGIQPD VTFT+VL+ACAHSG +D+AW IFN 
Sbjct: 409 IAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNV 468

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  +YGIQP VEHYACMVGVLSRA ++S+A EF+SKMP++P+AKVWGALL GAS++GDVE
Sbjct: 469 LLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVE 528

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK+V D LFEIEPENTGNY+IMANLYSQ+GRW +AD +R+ MKE  L KIPG SWIE S
Sbjct: 529 LGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETS 588

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
           GG+Q F  + +S  ++ ++Y +LE LLGL++EEG +L  E++ E
Sbjct: 589 GGMQRFCXRHSS-VRTPEVYGMLEGLLGLVKEEGIILQHEIDVE 631



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 162/325 (49%), Gaps = 38/325 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--LRPDGVTVVSVLQACGQ-SSD 57
           + +++I SWN++   Y+    + +   LF  ++NS    ++PD  TV   L+A     S+
Sbjct: 64  IPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSN 123

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
                EVH+F++   ++ D+++ NALI  Y++C  L  AR + D M ++D VS++A+++G
Sbjct: 124 SGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAG 183

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y   G  E+  +LF+VM                              + +  V+PNA+T 
Sbjct: 184 YSQGGSYEECKELFRVM------------------------------LSSVEVKPNALTA 213

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+    +  ++L  G E+H +  +++   ++ +  A+I  YAK G L  A+ +F+    
Sbjct: 214 VSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPE 273

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  I + ++IS Y  HG  ++A+ LF E      +P   T+ AV+S    +   + A DI
Sbjct: 274 KDGITYCSMISGYMVHGFVNQAMDLFREQE----RPRLPTWNAVISGLVQNNRQEGAVDI 329

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLS 322
           F AM   +G +P+    A ++ V S
Sbjct: 330 FRAMQ-SHGCRPNTVTLASILPVFS 353



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 141/295 (47%), Gaps = 31/295 (10%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           ++Q C        G ++H  ++ S +  D ++ + LI  Y+K GS+  A  +  ++  K+
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++A+   Y +H      + LF               S LV +N             +
Sbjct: 69  IFSWNALFISYTLHNMHTDLLKLF---------------SSLVNSN-------------S 100

Query: 168 SGVRPNAVTIS-SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           + V+P+  T++ S+ +L S FSN    KE+H + ++   + +I+V  A+I  Y++   L 
Sbjct: 101 TDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELV 160

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSAC 285
            A+ +FDR   R  + W A+++ Y+  G   +   LF  ML++  ++P+ +T  +VL AC
Sbjct: 161 LARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQAC 220

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A S  +    ++   ++ +  I+  V  +  ++G+ ++   +  A E   +MP K
Sbjct: 221 AQSNDLTFGIEVHRFVN-ESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEK 274



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 16/187 (8%)

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           GK++H   V +    + ++ + +I  Y+K+G +  A  VF +   +++  W A+  +Y  
Sbjct: 22  GKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTL 81

Query: 253 HGDASKAVSLFNEMLNNG---IQPDPVTFTAVLSACA----HSGLVDKAWDIFNAMSGQY 305
           H   +  + LF+ ++N+    ++PD  T T  L A A    +SGL  +     ++   + 
Sbjct: 82  HNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEV----HSFILRR 137

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G++  +     ++   SR   +  A     +MP + +   W A+L G S  G  E     
Sbjct: 138 GLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVS-WNAMLAGYSQGGSYE----E 192

Query: 366 CDHLFEI 372
           C  LF +
Sbjct: 193 CKELFRV 199


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/426 (70%), Positives = 361/426 (84%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDIVSWN+M+AGYSQGG YE+CK LFR ML+S  ++P+ +T VSVLQAC QS+D++F
Sbjct: 169 MPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIF 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+EVH FV ES IKMD+ + NA+IG+YAKCGSLDYAR L +EM +KD ++Y ++ISGYMV
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMV 288

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HGFV +AMDLF+  +RP L TWNAVISGLVQNNR E  +D+ R MQ+ G RPN VT++SI
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASI 348

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +FSHFS LKGGKEIHGYA++N YDRNIYVATAIID+YAK G+LHGAQ VFD+ KGRSL
Sbjct: 349 LPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSL 408

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT+IISAYA HGDA+ A+SLF EML NGIQPD VTFT+VL+ACAHSG +D+AW IFN 
Sbjct: 409 IAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNV 468

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  +YGIQP VEHYACMVGVLSRA ++S+A EF+SKMP++P+AKVWGALL GAS++GDVE
Sbjct: 469 LLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVE 528

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK+V D LFEIEPENTGNY+IMANLYSQ+GRW +AD +R+ MKE  L KIPG SWIE S
Sbjct: 529 LGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETS 588

Query: 421 GGLQSF 426
           GG+Q F
Sbjct: 589 GGMQRF 594



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 163/325 (50%), Gaps = 38/325 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--LRPDGVTVVSVLQACGQ-SSD 57
           + +++I SWN+++  Y+    + +   LF  ++NS    ++PD  TV   L+A     S+
Sbjct: 64  IPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSN 123

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
                EVH+F++   ++ D+++ NALI  Y++C  L  AR + D M ++D VS++A+++G
Sbjct: 124 SGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAG 183

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y   G  EK  +LF+VM                              + +  V+PNA+T 
Sbjct: 184 YSQGGSYEKCKELFRVM------------------------------LSSLEVKPNALTA 213

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+    +  ++L  G E+H +  +++   ++ +  A+I  YAK G L  A+ +F+    
Sbjct: 214 VSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLE 273

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  I + ++IS Y  HG  ++A+ LF E      +P   T+ AV+S    +   + A DI
Sbjct: 274 KDAITYCSMISGYMVHGFVNQAMDLFREQE----RPRLPTWNAVISGLVQNNRQEGAVDI 329

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLS 322
           F AM   +G +P+    A ++ V S
Sbjct: 330 FRAMQ-SHGCRPNTVTLASILPVFS 353



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 148/313 (47%), Gaps = 39/313 (12%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           ++Q C        G ++H  ++ S +  D ++ + LI  Y+K GS+  A  +  ++  K+
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++A++  Y +H      + LF               S LV +N             +
Sbjct: 69  IFSWNALLISYTLHNMHTDLLKLF---------------SSLVNSN-------------S 100

Query: 168 SGVRPNAVTIS-SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           + V+P+  T++ ++ +L S FSN    KE+H + ++   + +I+V  A+I  Y++   L 
Sbjct: 101 TDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELV 160

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSAC 285
            A+ +FDR   R ++ W A+++ Y+  G   K   LF  ML++  ++P+ +T  +VL AC
Sbjct: 161 LARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQAC 220

Query: 286 AHSGLVDKAWDI-FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           A S   D  + I  +    +  I+  V  +  ++G+ ++   +  A E   +M  K    
Sbjct: 221 AQSN--DLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEK---- 274

Query: 345 VWGALLYGASISG 357
              A+ Y + ISG
Sbjct: 275 --DAITYCSMISG 285



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 16/187 (8%)

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           GK++H   V +    + ++ + +I  Y+K+G +  A  VF +   +++  W A++ +Y  
Sbjct: 22  GKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTL 81

Query: 253 HGDASKAVSLFNEMLNNG---IQPDPVTFTAVLSACA----HSGLVDKAWDIFNAMSGQY 305
           H   +  + LF+ ++N+    ++PD  T T  L A A    +SGL  +     ++   + 
Sbjct: 82  HNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEV----HSFILRR 137

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G++  +     ++   SR   +  A     +MP +     W A+L G S  G  E     
Sbjct: 138 GLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVS-WNAMLAGYSQGGSYE----K 192

Query: 366 CDHLFEI 372
           C  LF +
Sbjct: 193 CKELFRV 199


>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
 gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/467 (66%), Positives = 371/467 (79%), Gaps = 31/467 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V+WNSMIAGY+Q GF++ECK L+REM   P  +P+ VTV+SVLQAC QS D+VF
Sbjct: 185 MRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVF 244

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GMEVH +++++ +++D+ +CNALIG+YAKCGSLDYAR L DEMS+KDEV+Y AIISGYM 
Sbjct: 245 GMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMA 304

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V+K M+LF+ MK   LSTWNAVISGLVQNNRHE V+DLVREMQ  G RPNAVT+SS+
Sbjct: 305 HGVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSV 364

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+FSNLKGGKEIHGYAVKN YDRNIYVATAIIDTYAK GFL GAQ VFD+ K RSL
Sbjct: 365 LPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSL 424

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           IIWTAIISA+AAHGDA+ A++ F+EML+NGIQPD VTFTAVL+ACAH G+VDKAW+IFN+
Sbjct: 425 IIWTAIISAHAAHGDANSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNS 484

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGIQP  EHYACMVGVL RA R+S+ATEF+S MP++P+AKVWGALL+GAS+  DVE
Sbjct: 485 MSKKYGIQPLGEHYACMVGVLGRAGRLSQATEFISTMPIEPNAKVWGALLHGASLCVDVE 544

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGKF CDHLFEIEPENTGNY IMANLYSQAG+W EAD                       
Sbjct: 545 LGKFACDHLFEIEPENTGNYAIMANLYSQAGKWKEAD----------------------- 581

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
                   +DTS + + +IY +L    GLM+EEG VL D++E+ + Y
Sbjct: 582 --------EDTSNENALEIYAMLGGFSGLMKEEGNVLEDDLEKVAVY 620



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 37/268 (13%)

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +D+  G E+H FV+   +  D+++ NALI  Y+KC  + +AR L D+M ++D V+++++I
Sbjct: 138 TDVCLGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMI 197

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNA 174
           +GY   GF ++  +L+                               REM A  G +PNA
Sbjct: 198 AGYAQAGFFKECKELY-------------------------------REMGALPGFKPNA 226

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT+ S+        +L  G E+H Y V N+ + ++ V  A+I  YAK G L  A+ +FD 
Sbjct: 227 VTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDE 286

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              +  + + AIIS Y AHG   K + LF EM +  +     T+ AV+S    +   +  
Sbjct: 287 MSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSRVLS----TWNAVISGLVQNNRHEGV 342

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLS 322
            D+   M G  G +P+    + ++  LS
Sbjct: 343 VDLVREMQG-LGFRPNAVTLSSVLPTLS 369



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 140/311 (45%), Gaps = 48/311 (15%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  ++ S   +D ++   LI +Y+K   + +AR + D++  K+  SY+A++  Y +  
Sbjct: 38  QLHARLLLSSSTLDNYLGARLINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTM-- 95

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD---LVREMQASGVRPNAVTISS 179
                                        NN H+  ++    +    +  ++PN  +I+ 
Sbjct: 96  -----------------------------NNHHKETINLFSSLLLSSSGDLQPNNYSITC 126

Query: 180 IFSLFSH---FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +    S     +++  GKEIH + ++     +++V  A+I  Y+K   +  A+++FD+ +
Sbjct: 127 LLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMR 186

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
            R ++ W ++I+ YA  G   +   L+ EM    G +P+ VT  +VL AC  S  +    
Sbjct: 187 ERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDL---- 242

Query: 296 DIFNAMSGQYGIQPSVEH--YAC--MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
            +F     +Y +   VE     C  ++G+ ++   +  A E   +M  K     +GA++ 
Sbjct: 243 -VFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEV-TYGAIIS 300

Query: 352 GASISGDVELG 362
           G    G V+ G
Sbjct: 301 GYMAHGVVDKG 311


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/467 (63%), Positives = 381/467 (81%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RDIV+WN+MI GYSQ   Y+ECK L+ EMLN   + P+ VT VSV+QACGQS D+ F
Sbjct: 200 MSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAF 259

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+H FV ES I++D+ + NA++ MYAKCG LDYAR + + M +KDEV+Y AIISGYM 
Sbjct: 260 GMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMD 319

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V+ AM +F+ ++ PGL+ WNAVISG+VQN + E V DLVR+MQ SG+ PNAVT++SI
Sbjct: 320 YGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASI 379

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              FS+FSNL+GGKE+HGYA++  Y++N+YV+T+IID Y K G + GA+ VFD  + RSL
Sbjct: 380 LPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSL 439

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           IIWT+IISAYAAHGDA  A+ L+ +ML+ GI+PDPVT T+VL+ACAHSGLVD+AW+IFN+
Sbjct: 440 IIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNS 499

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YGIQP VEHYACMVGVLSRA ++SEA +F+S+MP++PSAKVWG LL+GAS+ GDVE
Sbjct: 500 MPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVE 559

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GKF CDHLFEIEPENTGNYIIMANLY+ AG+W++A  VRE+MK  GL KI G SWIE S
Sbjct: 560 IGKFACDHLFEIEPENTGNYIIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETS 619

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
           GGL SF+AKD S  +S++IY +LE LLGLMREEG VL +E++ E+ +
Sbjct: 620 GGLLSFIAKDVSNGRSDEIYALLEGLLGLMREEGCVLQEELDYENVF 666



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 38/310 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREML--NSPVLRPDGVTVVSVLQACGQS-SDIVF 60
           R+  +WN+M+ GYS    +     LF       +P   PD  T+  VL+A   S      
Sbjct: 98  RNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPEL 157

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH  ++   +  D+++ NALI  Y +C  +  AR + D MS++D V+++A+I GY  
Sbjct: 158 AKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQ 217

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               ++   L+  M                              +  S V PN VT  S+
Sbjct: 218 RRLYDECKRLYLEM------------------------------LNVSAVAPNVVTAVSV 247

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +L  G E+H +  ++  + ++ ++ A++  YAK G L  A+ +F+  + +  
Sbjct: 248 MQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDE 307

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + + AIIS Y  +G    A+ +F  + N G+      + AV+S    +   +  +D+   
Sbjct: 308 VTYGAIISGYMDYGLVDDAMGVFRGVENPGLN----MWNAVISGMVQNKQFEGVFDLVRQ 363

Query: 301 MSGQYGIQPS 310
           M G  G+ P+
Sbjct: 364 MQGS-GLSPN 372



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 48/334 (14%)

Query: 38  LRPDGVTVV---SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94
           L P GV      S LQ C     +  G ++H  +I   +  D ++ + LI  Y+K     
Sbjct: 27  LSPPGVDFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAH 86

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +AR + D    ++                                 TWNA++ G   N+ 
Sbjct: 87  FARKVFDTTPHRNTF-------------------------------TWNAMLLGYSFNSM 115

Query: 155 HEAVLDLVREMQAS---GVRPNAVTISSIF-SLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
               L+L      S      P+  TIS +  +L S F + +  KE+H   ++     +I+
Sbjct: 116 FRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRRGLYSDIF 175

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-N 269
           V  A+I  Y +   +  A+ VFD    R ++ W A+I  Y+      +   L+ EMLN +
Sbjct: 176 VLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVS 235

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDI-FNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
            + P+ VT  +V+ AC  S  +D A+ +  +    + GI+  V     +V + ++  R+ 
Sbjct: 236 AVAPNVVTAVSVMQACGQS--MDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLD 293

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            A E    M  K        + YGA ISG ++ G
Sbjct: 294 YAREMFEGMREKDE------VTYGAIISGYMDYG 321


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/467 (63%), Positives = 369/467 (79%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+VSWNSMI+GYSQ G +E+CK L++ ML     +P+ VTV+SVLQACGQSSD+VF
Sbjct: 193 MSDRDVVSWNSMISGYSQSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVF 252

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GMEVH  +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM 
Sbjct: 253 GMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V++AM LF  M+  GLSTWNAVISGL+QNN HE V++  REM   G RPN VT+SS+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ SNLKGGKEIH +A++N  D NIYV T+IID YAK GFL GAQRVFD  K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+WTAII+AYA HGD+  A SLF++M   G +PD VT TAVLSA AHSG  DKA  IF++
Sbjct: 433 IVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAHSGDSDKAQHIFDS 492

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P VEHYACMV VLSRA ++S A EF+SKMP++P AKVWGALL GAS+ GDVE
Sbjct: 493 MLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEFISKMPIEPIAKVWGALLNGASVLGDVE 552

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR++MK  GL KIPG SWIE +
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEVVRDKMKRIGLKKIPGTSWIETN 612

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
            GL+SF+AKD+S ++S+++Y I+E L+  M ++ Y++  E++E  A+
Sbjct: 613 KGLRSFIAKDSSCERSKEMYDIIEGLVESMSDKEYIMKQELDEAYAF 659



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 195/449 (43%), Gaps = 84/449 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL-----RPDGVTVVSVLQACGQS 55
           ++ R+  S+N+++  Y+    Y +  +LF   + S        RPD +++  VL+A    
Sbjct: 83  ITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSGAARPDSISISCVLKALSGC 142

Query: 56  SDIVFG---MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
            D   G    +VH FVI      D+++ N LI  Y KC +++ AR + DEMSD+D VS++
Sbjct: 143 DDFWLGSLARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWN 202

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
           ++ISGY   G  E    L++ M                              +  S  +P
Sbjct: 203 SMISGYSQSGSFEDCKKLYKAM------------------------------LGCSDFKP 232

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N VT+ S+       S+L  G E+H   ++N    ++ +  A+I  YAK G L  A+ +F
Sbjct: 233 NEVTVISVLQACGQSSDLVFGMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALF 292

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE----------------MLNN------- 269
           D    +  + + AIIS Y AHG   +A++LF+E                M NN       
Sbjct: 293 DEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHEEVIN 352

Query: 270 --------GIQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
                   G +P+ VT +++L +  +S     G    A+ I N       +  S+     
Sbjct: 353 SFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYA 412

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL--FEIEP 374
            +G L  A+R+ +  +         S  VW A++   ++ GD +    + D +     +P
Sbjct: 413 KLGFLLGAQRVFDNCK-------DRSLIVWTAIITAYAVHGDSDSACSLFDQMQCLGTKP 465

Query: 375 ENTGNYIIMANLYSQAGRWDEADRVREQM 403
           +N     +++  ++ +G  D+A  + + M
Sbjct: 466 DNVTLTAVLS-AFAHSGDSDKAQHIFDSM 493


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/463 (62%), Positives = 363/463 (78%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD+VSWNSMI+GYSQ G +E+CK +++ ML     +P+GVTV+SV QACGQSSD++F
Sbjct: 193 MSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIF 252

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+EVH  +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM 
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V++AM LF  M+  GLSTWNA+ISGL+QNN HE V++  REM   G RPN VT+SS+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ SNLKGGKEIH +A++N  D NIYV T+IID YAK GFL GAQRVFD  K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTAII+AYA HGD+  A SLF++M   G +PD VT TAVLSA AHSG  D A  IF++
Sbjct: 433 IAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDS 492

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P VEHYACMV VLSRA ++S+A EF+SKMP+ P AKVWGALL GAS+ GD+E
Sbjct: 493 MLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLE 552

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR +MK  GL KIPG SWIE  
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETE 612

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
            GL+SF+AKD+S ++S+++Y I+E L+  M ++ Y+   E++E
Sbjct: 613 KGLRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYIRKQELDE 655



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 204/485 (42%), Gaps = 106/485 (21%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQSSDI 58
           R+  S+N+++  Y+    Y +  +LF   +     +S   RPD +++  VL+A     D 
Sbjct: 86  RNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDF 145

Query: 59  VFG---MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             G    +VH FVI      D+++ N +I  Y KC +++ AR + DEMS++D VS++++I
Sbjct: 146 WLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMI 205

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           SGY   G  E    +++ M                              +  S  +PN V
Sbjct: 206 SGYSQSGSFEDCKKMYKAM------------------------------LACSDFKPNGV 235

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+ S+F      S+L  G E+H   ++N    ++ +  A+I  YAK G L  A+ +FD  
Sbjct: 236 TVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEM 295

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNE----------------MLNN---------- 269
             +  + + AIIS Y AHG   +A++LF+E                M NN          
Sbjct: 296 SEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFR 355

Query: 270 -----GIQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
                G +P+ VT +++L +  +S     G    A+ I N       +  S+      +G
Sbjct: 356 EMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLG 415

Query: 320 VLSRARRI-------------------------SEATEFVSKMP---VKPSAKVWGALLY 351
            L  A+R+                           A     +M     KP      A+L 
Sbjct: 416 FLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLS 475

Query: 352 GASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             + SGD ++ + + D +   ++IEP    +Y  M ++ S+AG+  +A     +M    +
Sbjct: 476 AFAHSGDSDMAQHIFDSMLTKYDIEP-GVEHYACMVSVLSRAGKLSDAMEFISKMPIDPI 534

Query: 409 AKIPG 413
           AK+ G
Sbjct: 535 AKVWG 539


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/421 (52%), Positives = 299/421 (71%), Gaps = 5/421 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
           M +RD+VSWNS+I+  ++ G+Y EC  LF+E +     +   + P+GVTV SVL AC Q 
Sbjct: 177 MPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQL 236

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             + FG+ VH F  ES + MD+ + N++IG YAKCG L YAR LLD M+ KD +SYSA+I
Sbjct: 237 KVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMI 296

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           +GYM +G VE+ M LF+     G+S WN+VI+GLVQN R   VL L++EM AS V PN+ 
Sbjct: 297 TGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSA 356

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+S +      FS L G K+ HGYA++N YD++I + +A+ID YAK GFL  A++VF   
Sbjct: 357 TLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLT 416

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + RS I+WT+IISA AAHG+A +A+SLFN+M+  G +PD VTFT VLSACAHSG V +A 
Sbjct: 417 EHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEAR 476

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +FN+M   +GI P +E YACMV  LSRA  + EA + V+KMP +P+AKVWGALL GA++
Sbjct: 477 KVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMPFEPNAKVWGALLNGAAV 536

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            GDVE G++  D LF IEP+NTGNYI+MANLYS AG+W+EA+ +R  +   GL K+PG +
Sbjct: 537 VGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAGKWEEAETIRSMLWGVGLEKVPGCT 596

Query: 416 W 416
           W
Sbjct: 597 W 597



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 33/275 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----S 56
           + +  + +WN+++   S    +    +    +  S  + PD +T+ ++L++   S    S
Sbjct: 75  IPQPSLFAWNAILISLS---LHSPDPSAAVRLFASSAVSPDEITLSTLLRSLAASGPALS 131

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +V G E+H          DL++ NALI  YA  G +  ARA+ DEM  +D VS++++IS
Sbjct: 132 PLVTG-ELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLIS 190

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                G+  + +DLFQ   R                         VR     GV PN VT
Sbjct: 191 ACARAGWYRECLDLFQEFVR-------------------------VRCSDGDGVGPNGVT 225

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ++S+    +    +  G  +H +A ++  D ++ V  +II  YAK G L  A+++ D   
Sbjct: 226 VTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMT 285

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
            +  I ++A+I+ Y  +G   + + LF +    GI
Sbjct: 286 RKDSISYSAMITGYMNNGHVEEGMQLFRQASARGI 320



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 19/294 (6%)

Query: 83  LIGMYAKCGSLDYARA----LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           LI + A+ G L  AR     L+           S +IS Y     +  A  +F  + +P 
Sbjct: 20  LIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRDARRVFDSIPQPS 79

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS----HFSNLKGGK 194
           L  WNA++  L  ++   +    VR   +S V P+ +T+S++    +      S L  G 
Sbjct: 80  LFAWNAILISLSLHSPDPSA--AVRLFASSAVSPDEITLSTLLRSLAASGPALSPLVTG- 136

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           E+H  A    +  +++V+ A+I  YA  G +  A+ VFD    R ++ W ++ISA A  G
Sbjct: 137 ELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAG 196

Query: 255 DASKAVSLFNEMLN------NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
              + + LF E +       +G+ P+ VT T+VL ACA   +VD    + +  + + G+ 
Sbjct: 197 WYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGV-HRFAAESGLD 255

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             +  +  ++G  ++  R+  A + +  M  K S   + A++ G   +G VE G
Sbjct: 256 MDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSIS-YSAMITGYMNNGHVEEG 308



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           + V P+      +  L +   +L   ++IH   V      + ++A+ +I  Y++   L  
Sbjct: 8   TAVPPDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRD 67

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHG-DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           A+RVFD     SL  W AI+ + + H  D S AV LF    ++ + PD +T + +L + A
Sbjct: 68  ARRVFDSIPQPSLFAWNAILISLSLHSPDPSAAVRLFA---SSAVSPDEITLSTLLRSLA 124

Query: 287 HSG 289
            SG
Sbjct: 125 ASG 127


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/419 (53%), Positives = 294/419 (70%), Gaps = 3/419 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN---SPVLRPDGVTVVSVLQACGQSSD 57
           M +RD+VSWNS+I+ Y++ G+Y EC  LF+E+ +   +  +RP+ VTV S+L AC Q   
Sbjct: 177 MPQRDVVSWNSLISAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKA 236

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           I +G+ VH F  E+ + MD+ + N+ +G YAKCG L YAR L + M  KD VSYSA+I+G
Sbjct: 237 IDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITG 296

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           YM HG V+K M+LFQ     G+S WNAVI+GLVQN R   VL L+ EM  SG+ PN+ T+
Sbjct: 297 YMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSEVLGLLNEMIGSGILPNSATL 356

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S I      FS L G K+ HGYA++N YD++I V TA+ID Y+K GFL G+ RVF     
Sbjct: 357 SIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALIDAYSKAGFLDGSLRVFKSTGD 416

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           RS I+WT+IISA AAHG+A++A+ LFNEM N  I+PD + FTAVL+ACA++G V  A  +
Sbjct: 417 RSKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTIAFTAVLTACAYTGKVADARKV 476

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN+M   +GI P +E YACMV   SRA  + +A E V+ MP +P+AKVWG LL GA+  G
Sbjct: 477 FNSMQVLFGINPVMEQYACMVSAFSRAGMLKDALELVNSMPFEPNAKVWGPLLNGAAEFG 536

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           DVELG+FV D LF IEP+NTGNYI+MANLYS AG+W+EA+ +R  M   GL K+PG SW
Sbjct: 537 DVELGRFVFDRLFIIEPKNTGNYIVMANLYSNAGKWEEAEIIRSMMWGVGLEKVPGCSW 595



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 46/332 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS---D 57
           + +  + +WN+++   S    +    +       +  + PD +T+ ++L++  +S     
Sbjct: 75  IPRPSVFAWNAILIALS---LHSPDPSAAVRFFAASGISPDEITLSALLKSLAESGPRLS 131

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
            +   E H   ++     DL++ N LI  YA  G    ARA+ D+M  +D VS++++IS 
Sbjct: 132 ALVAAEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWNSLISA 191

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y   G+  + ++LFQ                           +L     A GVRPN+VT+
Sbjct: 192 YARAGWYRECLELFQ---------------------------ELASVHGAGGVRPNSVTV 224

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +SI    +    +  G  +H +A +N  D ++ V  + +  YAK G L  A+ +F+R   
Sbjct: 225 ASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPK 284

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  + ++A+I+ Y  HG   K + LF      GI      + AV++    +G   +   +
Sbjct: 285 KDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGIS----IWNAVIAGLVQNGRQSEVLGL 340

Query: 298 FNAMSGQ---------YGIQPSVEHYACMVGV 320
            N M G            I PSV  ++ ++GV
Sbjct: 341 LNEMIGSGILPNSATLSIIIPSVHLFSTLLGV 372



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 147/330 (44%), Gaps = 42/330 (12%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD      ++Q C  S  +  G ++H  +I   +    ++ + LI +Y++ G LD AR  
Sbjct: 12  PDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDDAR-- 69

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
                                         +F  + RP +  WNA++  L  ++   +  
Sbjct: 70  -----------------------------RVFDAIPRPSVFAWNAILIALSLHSPDPSAA 100

Query: 160 DLVREMQASGVRPNAVTISSIF-SLFSHFSNLKG--GKEIHGYAVKNRYDRNIYVATAII 216
             VR   ASG+ P+ +T+S++  SL      L      E H  AV+  +  +++V+  +I
Sbjct: 101 --VRFFAASGISPDEITLSALLKSLAESGPRLSALVAAEFHAVAVQRGFGDDLFVSNGLI 158

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN----NGIQ 272
             YA  G    A+ VFD+   R ++ W ++ISAYA  G   + + LF E+ +     G++
Sbjct: 159 TAYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWYRECLELFQELASVHGAGGVR 218

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+ VT  ++L ACA    +D    + +  + + G+   V  +   VG  ++  ++  A E
Sbjct: 219 PNSVTVASILHACAQLKAIDYGVRV-HRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARE 277

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELG 362
              +MP K  A  + A++ G    G V+ G
Sbjct: 278 LFERMP-KKDAVSYSAMITGYMNHGHVDKG 306



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           + V P+      +  L +   +L  G+++H   +      + ++A+ +I  Y++TG L  
Sbjct: 8   TAVPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDD 67

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHG-DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           A+RVFD     S+  W AI+ A + H  D S AV  F     +GI PD +T +A+L + A
Sbjct: 68  ARRVFDAIPRPSVFAWNAILIALSLHSPDPSAAVRFFAA---SGISPDEITLSALLKSLA 124

Query: 287 HSG 289
            SG
Sbjct: 125 ESG 127


>gi|222624689|gb|EEE58821.1| hypothetical protein OsJ_10390 [Oryza sativa Japonica Group]
          Length = 890

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/425 (52%), Positives = 299/425 (70%), Gaps = 6/425 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
           M +RD+VSWNS+I+  ++ G+Y EC  LF+E +     +   + P+GVTV SVL AC Q 
Sbjct: 11  MPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQL 70

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             + FG+ VH F  ES + MD+ + N++IG YAKCG L YAR LLD M+ KD +SYSA+I
Sbjct: 71  KVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMI 130

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           +GYM +G VE+ M LF+     G+S WN+VI+GLVQN R   VL L++EM AS V PN+ 
Sbjct: 131 TGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSA 190

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+S +      FS L G K+ HGYA++N YD++I + +A+ID YAK GFL  A++VF   
Sbjct: 191 TLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLT 250

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + RS I+WT+IISA AAHG+A +A+SLFN+M+  G +PD VTFT VLSACAHSG V +A 
Sbjct: 251 EHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEAR 310

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +FN+M   +GI P +E YACMV  LSRA  + EA + V+KMP +P+AKVWGALL GA++
Sbjct: 311 KVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMPFEPNAKVWGALLNGAAV 370

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK-IPGR 414
            GDVE G++  D LF IEP+NTGNYI+MANLYS AG+W+EA+ +R  +   GL K +P +
Sbjct: 371 VGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAGKWEEAETIRSMLWGVGLEKEVPPQ 430

Query: 415 SWIEC 419
              +C
Sbjct: 431 VKSQC 435



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 25/176 (14%)

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           ARA+ DEM  +D VS++++IS     G+  + +DLFQ   R                   
Sbjct: 4   ARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVR------------------- 44

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
                 VR     GV PN VT++S+    +    +  G  +H +A ++  D ++ V  +I
Sbjct: 45  ------VRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSI 98

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
           I  YAK G L  A+++ D    +  I ++A+I+ Y  +G   + + LF +    GI
Sbjct: 99  IGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGI 154



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN------NGIQPDPVTF 278
           +  A+ VFD    R ++ W ++ISA A  G   + + LF E +       +G+ P+ VT 
Sbjct: 1   MRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTV 60

Query: 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
           T+VL ACA   +VD    +    + + G+   +  +  ++G  ++  R+  A + +  M 
Sbjct: 61  TSVLHACAQLKVVDFGIGVHR-FAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMT 119

Query: 339 VKPSAKVWGALLYGASISGDVELG 362
            K S   + A++ G   +G VE G
Sbjct: 120 RKDSIS-YSAMITGYMNNGHVEEG 142


>gi|414866221|tpg|DAA44778.1| TPA: hypothetical protein ZEAMMB73_421222 [Zea mays]
          Length = 595

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/419 (51%), Positives = 294/419 (70%), Gaps = 3/419 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN---SPVLRPDGVTVVSVLQACGQSSD 57
           M +RD+VSWNS+I+ Y++ G+Y +C  LF+E+ +   +  +RP+ VTV SVL AC Q   
Sbjct: 176 MPRRDVVSWNSLISSYARAGWYRQCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKA 235

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           + FG+ VH    E+ +  D+ + N+ +G YAKCG L YAR L D M+ KD VSYS +I+G
Sbjct: 236 VDFGVRVHRLAAENGLDSDIAVWNSAVGFYAKCGRLKYARELFDGMAKKDAVSYSTMIAG 295

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           YM HG V+  ++LFQ     G+S WNAVI+GL+Q+ R   VL L+ EM  SG+ PN+ T+
Sbjct: 296 YMNHGHVDMGLELFQRADVQGISIWNAVIAGLIQHGRQSDVLGLLNEMIGSGMLPNSATL 355

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S +      FS L G K+ HGYA++N YD++I V TA+ID Y+K GFL G++RVF     
Sbjct: 356 SILIPSVHLFSTLLGVKQAHGYAIRNNYDQSIGVVTALIDAYSKAGFLDGSRRVFKLTDD 415

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           RS I+WT+IISA AAHG+A++A+ LFNEM+N GI+ D + FTAVL+ACAH+G V  A  I
Sbjct: 416 RSEIVWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIAFTAVLTACAHTGKVADARKI 475

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN+M   +GI P +E YACMV   SRA  +++A E V+ MP +P+A VWG LL GA+   
Sbjct: 476 FNSMQAMFGINPVMEQYACMVSAFSRAGMLNDALELVNSMPFEPNAMVWGPLLNGAAEFC 535

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           +VELG+FV D LF+IEP+NTGNYI+MANLYS AG+W+EAD +R +M   GL K+PG SW
Sbjct: 536 NVELGRFVFDQLFKIEPKNTGNYIVMANLYSNAGKWEEADIIRRRMWGVGLEKVPGCSW 594



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 142/331 (42%), Gaps = 45/331 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +  + +WN+++   S    +    +    +  +  + PD +T+ ++L++   S   + 
Sbjct: 75  IPRPSVFAWNAILIALS---LHSADPSDAARLFAASGISPDEITLSALLKSLADSGPRLS 131

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +  EVH   ++     DL++ N LI  YA  G    ARA+ DEM  +D VS++++IS Y
Sbjct: 132 ALVAEVHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSY 191

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G+  + ++LFQ                           +L     A GVRPN VT++
Sbjct: 192 ARAGWYRQCLELFQ---------------------------ELASVHGAGGVRPNNVTVA 224

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +    +  G  +H  A +N  D +I V  + +  YAK G L  A+ +FD    +
Sbjct: 225 SVLHACAQLKAVDFGVRVHRLAAENGLDSDIAVWNSAVGFYAKCGRLKYARELFDGMAKK 284

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + ++ +I+ Y  HG     + LF      GI      + AV++     G       + 
Sbjct: 285 DAVSYSTMIAGYMNHGHVDMGLELFQRADVQGIS----IWNAVIAGLIQHGRQSDVLGLL 340

Query: 299 NAMSGQYGIQ---------PSVEHYACMVGV 320
           N M G   +          PSV  ++ ++GV
Sbjct: 341 NEMIGSGMLPNSATLSILIPSVHLFSTLLGV 371



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 146/329 (44%), Gaps = 41/329 (12%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD      ++Q C  +  +  G ++H  ++ S +    ++ + LI +Y++   LD AR  
Sbjct: 12  PDPRAYGHLIQLCADTGHLAAGRQLHARLVASSVTPSNFLASKLISLYSRGAHLDDAR-- 69

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
                                         +F  + RP +  WNA++  L  ++   +  
Sbjct: 70  -----------------------------RVFDAIPRPSVFAWNAILIALSLHSADPS-- 98

Query: 160 DLVREMQASGVRPNAVTISSIF-SLFSHFSNLKG-GKEIHGYAVKNRYDRNIYVATAIID 217
           D  R   ASG+ P+ +T+S++  SL      L     E+H  AV+  +  +++V+  +I 
Sbjct: 99  DAARLFAASGISPDEITLSALLKSLADSGPRLSALVAEVHAVAVQRGFGDDLFVSNGLIT 158

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN----NGIQP 273
            YA  G    A+ VFD    R ++ W ++IS+YA  G   + + LF E+ +     G++P
Sbjct: 159 AYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARAGWYRQCLELFQELASVHGAGGVRP 218

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           + VT  +VL ACA    VD    + + ++ + G+   +  +   VG  ++  R+  A E 
Sbjct: 219 NNVTVASVLHACAQLKAVDFGVRV-HRLAAENGLDSDIAVWNSAVGFYAKCGRLKYAREL 277

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELG 362
              M  K  A  +  ++ G    G V++G
Sbjct: 278 FDGM-AKKDAVSYSTMIAGYMNHGHVDMG 305



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           + V P+      +  L +   +L  G+++H   V +    + ++A+ +I  Y++   L  
Sbjct: 8   TAVPPDPRAYGHLIQLCADTGHLAAGRQLHARLVASSVTPSNFLASKLISLYSRGAHLDD 67

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           A+RVFD     S+  W AI+ A + H  D S A  LF     +GI PD +T +A+L + A
Sbjct: 68  ARRVFDAIPRPSVFAWNAILIALSLHSADPSDAARLFAA---SGISPDEITLSALLKSLA 124

Query: 287 HSG 289
            SG
Sbjct: 125 DSG 127


>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Brachypodium distachyon]
          Length = 596

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/419 (49%), Positives = 289/419 (68%), Gaps = 3/419 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---RPDGVTVVSVLQACGQSSD 57
           M +RD+VSWNS+I+  ++ G Y EC  LF  ++ +  +   +P+ VTV SVL +C Q   
Sbjct: 177 MPRRDVVSWNSLISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSCAQLKA 236

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           + FG+ V     ES + MD+   N+++G YAKCG L +AR LL+ M  KD VSYSA+I+G
Sbjct: 237 VDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHARELLERMPKKDTVSYSAMITG 296

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           YM +G VE+ M LF+     G++TWNA+ISGL+QN R   VL L+ EM  + + PNA T+
Sbjct: 297 YMNNGHVEEGMSLFRQADAKGINTWNALISGLIQNGRQSDVLGLLHEMIGASLLPNAATL 356

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S I      FS L G K+ HGY ++N YD++  V +A+ID Y+K GFL  A++VF+  + 
Sbjct: 357 SIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFLDMAKKVFEWDEN 416

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           RS I+WT+II+A AAHGD + A+ LFN+M+  G  PD VTFT VL+ACAH G V +A ++
Sbjct: 417 RSTIVWTSIIAAVAAHGDVAAALGLFNQMVRAGTCPDTVTFTVVLTACAHVGKVAEAREV 476

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F++M   +GI P +E YAC+  VLSRA  +++A E V+KMP +P+AKVWGALL GA+  G
Sbjct: 477 FDSMQTVFGISPVMEQYACIASVLSRAGMLTDALELVNKMPFEPNAKVWGALLNGAAAVG 536

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           DV+LG+F  D LF IEP+NTGNYI+MANLYS AG+W++A+ +R  +   GL K+PG SW
Sbjct: 537 DVQLGRFAFDRLFMIEPKNTGNYIVMANLYSNAGKWEDAEIIRSMLWGVGLEKVPGCSW 595



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 148/331 (44%), Gaps = 44/331 (13%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD      ++Q C  S  +  G ++H  ++   +    ++ + LI +Y++   L  AR  
Sbjct: 12  PDPRVYGHLIQLCADSGHLAAGQQLHARLVALSVIPSNFLASKLISLYSRTARLHDAR-- 69

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
                                         +F  + +P L  WNA++  L  ++   +  
Sbjct: 70  -----------------------------RVFDAIPQPNLFAWNAILIALSLHSPEPSAA 100

Query: 160 DLVREMQASGVRPNAVTISSIFSLF----SHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
             +R    SGV P+ VT+S++        +  S L  G EIH  A    +  +++V+  +
Sbjct: 101 --LRLFAGSGVSPDEVTVSALLKSLAASGTGLSPLVTG-EIHALAFLRGFGTDLFVSNGL 157

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN----NGI 271
           +  YA TG +  A+ VFD    R ++ W ++ISA    G   + + LF+ ++      G+
Sbjct: 158 VTAYANTGDIRSARAVFDEMPRRDVVSWNSLISACTRVGCYRECLELFSGLVRARAIGGV 217

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
           QP+ VT T+VL +CA    VD   ++   ++ + G+   +  +  +VG  ++  R+  A 
Sbjct: 218 QPNNVTVTSVLHSCAQLKAVDFGVNVLR-VAAESGLDMDIATWNSVVGFYAKCGRLQHAR 276

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           E + +MP K +   + A++ G   +G VE G
Sbjct: 277 ELLERMPKKDTVS-YSAMITGYMNNGHVEEG 306



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 163/378 (43%), Gaps = 55/378 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----S 56
           + + ++ +WN+++   S      E  A  R    S V  PD VTV ++L++   S    S
Sbjct: 75  IPQPNLFAWNAILIALSL--HSPEPSAALRLFAGSGV-SPDEVTVSALLKSLAASGTGLS 131

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +V G E+H          DL++ N L+  YA  G +  ARA+ DEM  +D VS++++IS
Sbjct: 132 PLVTG-EIHALAFLRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSWNSLIS 190

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                G   + ++LF                             LVR     GV+PN VT
Sbjct: 191 ACTRVGCYRECLELFS---------------------------GLVRARAIGGVQPNNVT 223

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ++S+    +    +  G  +   A ++  D +I    +++  YAK G L  A+ + +R  
Sbjct: 224 VTSVLHSCAQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHARELLERMP 283

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +  + ++A+I+ Y  +G   + +SLF +    GI     T+ A++S    +G       
Sbjct: 284 KKDTVSYSAMITGYMNNGHVEEGMSLFRQADAKGIN----TWNALISGLIQNGRQSDVLG 339

Query: 297 IFNAMSGQYG---------IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
           + + M G            I PSV  ++ ++G         +A  +V +     S  V  
Sbjct: 340 LLHEMIGASLLPNAATLSIIIPSVPLFSTLLGA-------KQAHGYVIRNDYDQSNNVVS 392

Query: 348 ALLYGASISGDVELGKFV 365
           AL+   S +G +++ K V
Sbjct: 393 ALIDAYSKAGFLDMAKKV 410



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           + V P+      +  L +   +L  G+++H   V      + ++A+ +I  Y++T  LH 
Sbjct: 8   TAVPPDPRVYGHLIQLCADSGHLAAGQQLHARLVALSVIPSNFLASKLISLYSRTARLHD 67

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHG-DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           A+RVFD     +L  W AI+ A + H  + S A+ LF     +G+ PD VT +A+L + A
Sbjct: 68  ARRVFDAIPQPNLFAWNAILIALSLHSPEPSAALRLFA---GSGVSPDEVTVSALLKSLA 124

Query: 287 HSG 289
            SG
Sbjct: 125 ASG 127


>gi|218192568|gb|EEC74995.1| hypothetical protein OsI_11055 [Oryza sativa Indica Group]
          Length = 1018

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/425 (46%), Positives = 270/425 (63%), Gaps = 44/425 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
           M +RD+VSWNS+I+  ++ G+Y EC  LF+E +     +   + P+GVTV SVL AC Q 
Sbjct: 177 MPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQL 236

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             + FG+ VH F  ES + MD+                                      
Sbjct: 237 KVVDFGIGVHRFAAESGLDMDM-------------------------------------- 258

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           +GYM +G VE+ M LF+     G+S WN+VI+GLVQN R   VL L++EM AS V PN+ 
Sbjct: 259 AGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSA 318

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+S +      FS L G K+ HGYA++N YD++I + +A+ID YAK GFL  A++VF   
Sbjct: 319 TLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLT 378

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + RS I+WT+IISA AAHG+A +A+SLFN+M+  G +PD VTFT VLSACAHSG V +A 
Sbjct: 379 EHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEAR 438

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +FN+M   +GI P +E YACMV  LSRA  + EA + V+KMP +P+AKVWGALL GA++
Sbjct: 439 KVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMPFEPNAKVWGALLNGAAV 498

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK-IPGR 414
            GDVE G++  D LF IEP+NTGNYI+MANLYS AG+W+EA+ +R  +   GL K +P +
Sbjct: 499 VGDVEFGRYAFDRLFIIEPKNTGNYIVMANLYSNAGKWEEAETIRSMLWGVGLEKEVPPQ 558

Query: 415 SWIEC 419
              +C
Sbjct: 559 VKSQC 563



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 17/224 (7%)

Query: 83  LIGMYAKCGSLDYARA----LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           LI + A+ G L  AR     L+           S +IS Y     +  A  +F  + +P 
Sbjct: 20  LIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRDARRVFDSIPQPS 79

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS----HFSNLKGGK 194
           L  WNA++  L  ++   +    VR   +S V P+ +T+S++    +      S L  G 
Sbjct: 80  LFAWNAILISLSLHSPDPSA--AVRLFASSAVSPDEITLSTLLRSLAASGPALSPLVTG- 136

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           E+H  A    +  +++V+ A+I  YA  G +  A+ VFD    R ++ W ++ISA A  G
Sbjct: 137 ELHAVAFLWGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAG 196

Query: 255 DASKAVSLFNEMLN------NGIQPDPVTFTAVLSACAHSGLVD 292
              + + LF E +       +G+ P+ VT T+VL ACA   +VD
Sbjct: 197 WYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVD 240



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           + V P+      +  L +   +L   ++IH   V      + ++A+ +I  Y++   L  
Sbjct: 8   TAVPPDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRD 67

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHG-DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           A+RVFD     SL  W AI+ + + H  D S AV LF    ++ + PD +T + +L + A
Sbjct: 68  ARRVFDSIPQPSLFAWNAILISLSLHSPDPSAAVRLF---ASSAVSPDEITLSTLLRSLA 124

Query: 287 HSG 289
            SG
Sbjct: 125 ASG 127


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/474 (39%), Positives = 297/474 (62%), Gaps = 12/474 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD++SW SM + Y   G   E    FR+M LN    RP+ VTV S+L AC    D+ 
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGE--RPNSVTVSSILPACTDLKDLK 196

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G EVH FV+ + +  ++++ +AL+ MYA C S+  A+ + D MS +D VS++ +I+ Y 
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 120 VHGFVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           ++   EK + +F  M   G+    ++WNAVI G +QN R E  L+++  MQ SG +PN +
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           TI+S+    ++  +L+GGK+IHGY  ++ + +++   TA++  YAK G L  ++RVF   
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R  + W  +I A + HG+  +A+ LF EM+++G++P+ VTFT VLS C+HS LVD+  
Sbjct: 377 TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGL 436

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            IF++MS  + ++P  +H++CMV VLSRA R+ EA EF+ KMP++P+A  WGALL G  +
Sbjct: 437 LIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRV 496

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             +VELG+   + LFEIE +N GNY++++N+   A  W EA   R+ M++ G+ K PG S
Sbjct: 497 YKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCS 556

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           WI+    + +FV  D S D+S++IY  L+ +   MR  GY+     +L +V++E
Sbjct: 557 WIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQE 610



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 191/406 (47%), Gaps = 36/406 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+ +W  +I+  ++ G   E    + +  +   + PD + ++SV +AC    D++    V
Sbjct: 41  DLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRV 100

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   I      D+ + NALI MY KC   + AR + + M  +D +S++++ S Y+  G +
Sbjct: 101 HEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLL 160

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+  F                               R+M  +G RPN+VT+SSI    
Sbjct: 161 REALGAF-------------------------------RKMGLNGERPNSVTVSSILPAC 189

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +LK G+E+HG+ V+N    N++V++A+++ YA    +  AQ VFD    R  + W 
Sbjct: 190 TDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWN 249

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM--S 302
            +I+AY  + +  K +S+F  M++ G+  +  ++ AV+  C  +G  +KA ++ + M  S
Sbjct: 250 VLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS 309

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           G    Q ++         L   R   +   ++ +           AL++  +  GD+EL 
Sbjct: 310 GFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELS 369

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + V   + + +  +    II  +++   G  +EA  +  +M +SG+
Sbjct: 370 RRVFSMMTKRDTVSWNTMIIATSMH---GNGEEALLLFREMVDSGV 412



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN- 268
           ++A   I  Y+ +G L  A+ +FD+     L  WT +ISA   HG + +A+  +N+  + 
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 269 NGIQPDPVTFTAVLSACA 286
           N ++PD +   +V  ACA
Sbjct: 72  NCVEPDKLLLLSVAKACA 89


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/469 (39%), Positives = 286/469 (60%), Gaps = 10/469 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++VSWN M+AG+   GFY+E   +FR ML      PDG TV  VL A G   D+V G +V
Sbjct: 204 NLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQG-FWPDGSTVSCVLPAVGCLEDVVVGAQV 262

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +VI+  +  D ++ +A++ MY KCG +     + DE+ + +  S +A ++G   +G V
Sbjct: 263 HGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMV 322

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + A+++F   K   +     TW ++I+   QN +    L+L R+MQA GV PNAVTI S+
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSL 382

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                + S L  GKEIH ++++     ++YV +A+ID YAK G +  A+R FD+    +L
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNL 442

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A++  YA HG A + + +F+ ML +G +PD VTFT VLSACA +GL ++ W  +N+
Sbjct: 443 VSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNS 502

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS ++GI+P +EHYAC+V +LSR  ++ EA   + +MP +P A VWGALL    +  ++ 
Sbjct: 503 MSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLS 562

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LF +EP N GNYI+++N+Y+  G WDE +R+RE MK  GL K PG SWIE  
Sbjct: 563 LGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVG 622

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +   +A D S  + + I   L++L   M++ GY+     +L +VEE+
Sbjct: 623 HKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQ 671



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 159/309 (51%), Gaps = 6/309 (1%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + S++S+I  +++   +      F   L+   L PD   + S +++C     +  G ++H
Sbjct: 69  LFSFSSLIHAFARSHHFPHVLTTFSH-LHPLRLIPDAFLLPSAIKSCASLRALDPGQQLH 127

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F   S    D  + ++L  MY KC  +  AR L D M D+D V +SA+I+GY   G VE
Sbjct: 128 AFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVE 187

Query: 126 KAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           +A +LF  M+     P L +WN +++G   N  ++  + + R M   G  P+  T+S + 
Sbjct: 188 EAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVL 247

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                  ++  G ++HGY +K     + +V +A++D Y K G +    RVFD  +   + 
Sbjct: 248 PAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIG 307

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
              A ++  + +G    A+ +FN+  +  ++ + VT+T+++++C+ +G   +A ++F  M
Sbjct: 308 SLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM 367

Query: 302 SGQYGIQPS 310
              YG++P+
Sbjct: 368 QA-YGVEPN 375



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 130/285 (45%), Gaps = 7/285 (2%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           ++ L   +  P L +++++I    +++    VL     +    + P+A  + S     + 
Sbjct: 57  SLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCAS 116

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L  G+++H +A  + +  +  VA+++   Y K   +  A+++FDR   R +++W+A+
Sbjct: 117 LRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAM 176

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ Y+  G   +A  LF EM + G++P+ V++  +L+   ++G  D+A  +F  M  Q G
Sbjct: 177 IAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-G 235

Query: 307 IQPSVEHYACM---VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
             P     +C+   VG L      ++   +V K  +     V  A+L      G V+   
Sbjct: 236 FWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMS 295

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            V D   E+E    G+        S+ G  D A  V  + K+  +
Sbjct: 296 RVFD---EVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKM 337



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 7/125 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS  ++VSWN+++ GY+  G  +E   +F  ML S   +PD VT   VL AC Q+     
Sbjct: 437 MSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQ-KPDLVTFTCVLSACAQNGLTEE 495

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G   +N + E H    KM+ + C  L+ + ++ G L+ A +++ EM  + D   + A++S
Sbjct: 496 GWRCYNSMSEEHGIEPKMEHYAC--LVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553

Query: 117 GYMVH 121
              VH
Sbjct: 554 SCRVH 558


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/473 (40%), Positives = 281/473 (59%), Gaps = 14/473 (2%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           + +DIVSWNSM+ G+ QGG+ ++   LF  M N  V  P+ VT+VSV+ AC ++ ++  G
Sbjct: 304 NNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGV-HPNAVTMVSVMSACAKTMNLTLG 362

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV- 120
            +V +++  + + M+L +CNA I M+ KCG ++ AR L D M  +D VS++ II GY   
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422

Query: 121 --HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ--ASGVRPNAVT 176
             HG    A D+F  M R  +  WN +ISG  Q+ R +  L + RE+Q   SG RP+ VT
Sbjct: 423 SEHGI---ARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVT 479

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S  S  +    +  G+ IHGY  K R   N  +AT++ID Y+K+G +  A  VF    
Sbjct: 480 LLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG 539

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + + +W+A+I+  A HG    A+ LF +M    ++P+ VTFT +L AC+HSGLVD+   
Sbjct: 540 NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKR 599

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F+ M   YG+ P  +HY+CMV VL RA  + EA +F+  MP+ PSA VWGALL    I 
Sbjct: 600 LFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIH 659

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G++EL +  C  L EIEP N G Y++++NLY++ G W+    +R+QM++SGL K  G S 
Sbjct: 660 GNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSS 719

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           IE  G +  F+  D +   S  IY  L+ ++  +R  GYV     +L  VEEE
Sbjct: 720 IEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEE 772



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 211/489 (43%), Gaps = 113/489 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + ++ SWN +I   +      +   +F  ML+     P+  T   +++A  +    + 
Sbjct: 199 IPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLV 258

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISGY 118
           G  VH   I++    D+++ N+LI  YA CG LD A  + +  E ++KD VS++++++G+
Sbjct: 259 GKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF 318

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G+ +KA+DLF+                                M+  GV PNAVT+ 
Sbjct: 319 VQGGYPDKALDLFE-------------------------------RMRNEGVHPNAVTMV 347

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S  +   NL  G+++  Y  +N    N+ V  A ID + K G +  A+ +FD  + R
Sbjct: 348 SVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKR 407

Query: 239 SLIIWTAIISAYAA---HGDA----------------------------SKAVSLFNE-- 265
            ++ WT II  YA    HG A                             +A+++F E  
Sbjct: 408 DVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQ 467

Query: 266 MLNNGIQPDPVTFTAVLSACAH-----------------------------------SGL 290
           +  +G +PD VT  + LSACA                                    SG 
Sbjct: 468 LTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGD 527

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWG 347
           V+KA ++F+++  +      V  ++ M+  L+   R   A E    M    VKP++  + 
Sbjct: 528 VEKAIEVFHSIGNK-----DVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFT 582

Query: 348 ALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            LL   S SG V+ GK + D +   + + P+ T +Y  M ++  +AG  +EA +  E M 
Sbjct: 583 NLLCACSHSGLVDEGKRLFDEMERVYGVVPK-TKHYSCMVDVLGRAGHLEEALKFIEGMP 641

Query: 405 ESGLAKIPG 413
            +  A + G
Sbjct: 642 LAPSASVWG 650



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 49/278 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M ++DI +WN +I+GY Q G  +E  A+FRE+ L     RPD VT++S L AC Q   + 
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H ++ +  I+++  +  +LI MY+K G ++ A  +   + +KD   +SA+I+G  
Sbjct: 495 IGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLA 554

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +HG                               R EA ++L  +MQ + V+PN+VT ++
Sbjct: 555 MHG-------------------------------RGEAAIELFLDMQETQVKPNSVTFTN 583

Query: 180 IFSLFSHFSNLKGGK-------EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           +    SH   +  GK        ++G   K ++       + ++D   + G L  A +  
Sbjct: 584 LLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH------YSCMVDVLGRAGHLEEALKFI 637

Query: 233 DRFK-GRSLIIWTAIISAYAAHGD---ASKAVSLFNEM 266
           +      S  +W A++ A   HG+   A KA S   E+
Sbjct: 638 EGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEI 675



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 85  GMYAKCGSLDYARALLDEM--SDK--DEVSYSAIISGYMVHGF--VEKAMDLFQVMKRPG 138
            ++ +C S    + +  +M  ++K  D  + S + +      F  ++ A  +F  + +P 
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPN 203

Query: 139 LSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
           L +WN +I  L  ++   ++VL  +R +  S   PN  T   +    +       GK +H
Sbjct: 204 LYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGD 255
           G A+K  +  +++V  ++I  YA  G L  A  VF+  +G  + ++ W ++++ +   G 
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGY 323

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
             KA+ LF  M N G+ P+ VT  +V+SACA +
Sbjct: 324 PDKALDLFERMRNEGVHPNAVTMVSVMSACAKT 356


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  370 bits (949), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 281/468 (60%), Gaps = 7/468 (1%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++DIVSWNSMI+G+ QGG  EE   LF+ M      RP+ VT+V VL AC +  D+ FG 
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENA-RPNRVTMVGVLSACAKRIDLEFGR 252

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
              +++  + I ++L + NA++ MY KCGSL+ AR L D+M +KD VS++ +I GY   G
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVG 312

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIF 181
             + A  +F VM R  ++ WNA+IS   QN + +  L + RE+Q +   +PN VT++S  
Sbjct: 313 DYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTL 372

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +    +  G  IH Y  K     N ++ T++ID Y+K G L  A  VF   + R + 
Sbjct: 373 AACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVF 432

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +W+A+I+  A HG    A+ LF++M    ++P+ VTFT +L AC+HSGLVD+    FN M
Sbjct: 433 VWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQM 492

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              YG+ P  +HYACMV +L RA  + EA E + KMP+ PSA VWGALL    I G+VEL
Sbjct: 493 RPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVEL 552

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +  C  L E +  N G Y++++N+Y++AG+WD   R+R+ MK SGL K PG S IE +G
Sbjct: 553 AEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNG 612

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D S   S +IY  L+ ++  ++  GYV     LL  VEEE
Sbjct: 613 IIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEE 660



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 210/445 (47%), Gaps = 48/445 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + ++ +WN++I  ++      +   +F +ML+     P+  T   V++A  + S ++ 
Sbjct: 90  IPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA 149

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V+++    DL+I N+LI  Y+  G LD A  +  ++ +KD VS++++ISG++ 
Sbjct: 150 GQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQ 209

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            G  E+A+ LF+ MK    RP   T   V+S   +    E        ++ +G+  N + 
Sbjct: 210 GGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLIL 269

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +++  ++    +L+  + +         +++I   T +ID YAK G    A+RVFD   
Sbjct: 270 SNAMLDMYVKCGSLEDARRL----FDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP 325

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
              +  W A+IS+Y  +G   +A+++F E+ LN   +P+ VT  + L+ACA  G +D   
Sbjct: 326 REDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGG 385

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE----------------------- 332
            I   +  Q GI+ +      ++ + S+   + +A E                       
Sbjct: 386 WIHVYIKKQ-GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMH 444

Query: 333 --------FVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTG 378
                     SKM    VKP+A  +  LL   S SG V+ G+   + +   + + P  + 
Sbjct: 445 GHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVP-GSK 503

Query: 379 NYIIMANLYSQAGRWDEADRVREQM 403
           +Y  M ++  +AG  +EA  + E+M
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKM 528



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 132/288 (45%), Gaps = 18/288 (6%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISSIFS 182
           ++ A  +F  + RP L TWN +I     + +  + +L  ++ +  S   PN+ T   +  
Sbjct: 80  LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S+L  G+ IHG  +K  +  +++++ ++I  Y+  G L  A  VF +   + ++ 
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVS 199

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-FNAM 301
           W ++IS +   G   +A+ LF  M     +P+ VT   VLSACA      K  D+ F   
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA------KRIDLEFGRW 253

Query: 302 SGQY----GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +  Y    GI  ++     M+ +  +   + +A     KM  K     W  ++ G +  G
Sbjct: 254 ACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS-WTTMIDGYAKVG 312

Query: 358 DVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           D +  + V    F++ P E+   +  + + Y Q G+  EA  +  +++
Sbjct: 313 DYDAARRV----FDVMPREDITAWNALISSYQQNGKPKEALAIFRELQ 356



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 56/310 (18%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--KTGFLHGAQRVFDRF 235
           S++  L    +N K  K++H + ++     +   AT +    A      L  A +VFD+ 
Sbjct: 31  STVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQI 90

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSAC--------- 285
              +L  W  +I A+A+     + + +F +ML+   + P+  TF  V+ A          
Sbjct: 91  PRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAG 150

Query: 286 -AHSGLVDKA---WDIF--NAMSGQYG---------------IQPSVEHYACMVGVLSRA 324
            A  G+V KA    D+F  N++   Y                ++  +  +  M+    + 
Sbjct: 151 QAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQG 210

Query: 325 RRISEATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--- 378
               EA +   +M +   +P+      +L   +   D+E G++ CD++     E  G   
Sbjct: 211 GSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYI-----ERNGIDI 265

Query: 379 NYII---MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDK 435
           N I+   M ++Y + G  ++A R+ ++M+E  +      SW     G     AK    D 
Sbjct: 266 NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIV-----SWTTMIDG----YAKVGDYDA 316

Query: 436 SEQIYLILER 445
           + +++ ++ R
Sbjct: 317 ARRVFDVMPR 326


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/473 (39%), Positives = 288/473 (60%), Gaps = 11/473 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSW S+ + Y + GF  +   +FREM  S V +P+ +TV S+L AC +  D+  G E
Sbjct: 228 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGV-KPNPMTVSSILPACAELKDLKSGKE 286

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F +   + ++L++C+AL+ +YAKC S+  AR + D M  +D VS++ +++ Y  +  
Sbjct: 287 IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKE 346

Query: 124 VEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            EK   LF  M R G+    +TWNAVI G ++N R E  +++ R+MQ  G +PN +TISS
Sbjct: 347 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISS 406

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I    S   NL+ GKEIH Y  ++    ++   TA++  YAK G L+ ++ VFD  + + 
Sbjct: 407 ILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKD 466

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A A HG+  +A+ LF++ML + +QP+ VTFT VLS C+HS LV++   IFN
Sbjct: 467 VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFN 526

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   + ++P   HY+C+V + SRA R++EA +F+  MP++P+A  WGALL    +  +V
Sbjct: 527 SMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNV 586

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL K     LFEIEP N GNY+ + N+   A  W EA +VR  MKE G+ K PG SW++ 
Sbjct: 587 ELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 646

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESA 466
              + +FV  D S  +S++IY  L+ L+  M+  G      YVL D  +EE A
Sbjct: 647 GNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKA 699



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 181/372 (48%), Gaps = 36/372 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D  + +++I+  +  G   E   ++   L    ++PD    ++  +AC  S D + 
Sbjct: 124 IPQPDPTTCSTLISALTTHGLSNEAIKIYSS-LQERGIKPDMPVFLAAAKACAVSGDALR 182

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH+      +  D+++ NALI  Y KC  ++ AR + D++  +D VS++++ S Y+ 
Sbjct: 183 VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF  K MD+F                               REM  SGV+PN +T+SSI
Sbjct: 243 CGFPRKGMDVF-------------------------------REMGWSGVKPNPMTVSSI 271

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +LK GKEIHG+AV++    N++V +A++  YAK   +  A+ VFD    R +
Sbjct: 272 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 331

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++AY  + +  K  SLF +M  +G++ D  T+ AV+  C  +G  ++A ++F  
Sbjct: 332 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRK 391

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMPVKPSAKVWGALLYGASISG 357
           M  + G +P+    + ++   S +  +    E   +V +           ALLY  +  G
Sbjct: 392 MQ-KMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCG 450

Query: 358 DVELGKFVCDHL 369
           D+ L + V D +
Sbjct: 451 DLNLSRNVFDMM 462



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 70/267 (26%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M  RD+VSWN ++  Y +   YE+  +LF +M    V                       
Sbjct: 326 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 385

Query: 38  -----------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
                       +P+ +T+ S+L AC  S ++  G E+H +V       DL    AL+ M
Sbjct: 386 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 445

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YAKCG L+ +R + D M  KD V+++ +I    +HG  ++A+ LF               
Sbjct: 446 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFD-------------- 491

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY- 205
                            +M  S V+PN+VT + + S  SH   ++ G +I     ++   
Sbjct: 492 -----------------KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLV 534

Query: 206 --DRNIYVATAIIDTYAKTGFLHGAQR 230
             D N Y  + ++D Y++ G L+ A +
Sbjct: 535 EPDANHY--SCVVDIYSRAGRLNEAYK 559



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++   +I      G  + A+++FD          + +ISA   HG +++A+ +++ +   
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 270 GIQPDPVTFTAVLSACAHSG 289
           GI+PD   F A   ACA SG
Sbjct: 159 GIKPDMPVFLAAAKACAVSG 178


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/473 (39%), Positives = 288/473 (60%), Gaps = 11/473 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSW S+ + Y + GF  +   +FREM  S V +P+ +TV S+L AC +  D+  G E
Sbjct: 142 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGV-KPNPMTVSSILPACAELKDLKSGKE 200

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F +   + ++L++C+AL+ +YAKC S+  AR + D M  +D VS++ +++ Y  +  
Sbjct: 201 IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKE 260

Query: 124 VEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            EK   LF  M R G+    +TWNAVI G ++N R E  +++ R+MQ  G +PN +TISS
Sbjct: 261 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISS 320

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I    S   NL+ GKEIH Y  ++    ++   TA++  YAK G L+ ++ VFD  + + 
Sbjct: 321 ILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKD 380

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A A HG+  +A+ LF++ML + +QP+ VTFT VLS C+HS LV++   IFN
Sbjct: 381 VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFN 440

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   + ++P   HY+C+V + SRA R++EA +F+  MP++P+A  WGALL    +  +V
Sbjct: 441 SMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNV 500

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL K     LFEIEP N GNY+ + N+   A  W EA +VR  MKE G+ K PG SW++ 
Sbjct: 501 ELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 560

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESA 466
              + +FV  D S  +S++IY  L+ L+  M+  G      YVL D  +EE A
Sbjct: 561 GNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKA 613



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 190/395 (48%), Gaps = 37/395 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D  + +++I+  +  G   E   ++   L    ++PD    ++  +AC  S D + 
Sbjct: 38  IPQPDPTTCSTLISALTTHGLSNEAIKIYSS-LQERGIKPDMPVFLAAAKACAVSGDALR 96

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH+      +  D+++ NALI  Y KC  ++ AR + D++  +D VS++++ S Y+ 
Sbjct: 97  VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 156

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF  K MD+F                               REM  SGV+PN +T+SSI
Sbjct: 157 CGFPRKGMDVF-------------------------------REMGWSGVKPNPMTVSSI 185

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +LK GKEIHG+AV++    N++V +A++  YAK   +  A+ VFD    R +
Sbjct: 186 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 245

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++AY  + +  K  SLF +M  +G++ D  T+ AV+  C  +G  ++A ++F  
Sbjct: 246 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRK 305

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMPVKPSAKVWGALLYGASISG 357
           M  + G +P+    + ++   S +  +    E   +V +           ALLY  +  G
Sbjct: 306 MQ-KMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCG 364

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
           D+ L + V D +   +     N +I+AN     G+
Sbjct: 365 DLNLSRNVFD-MMRRKDVVAWNTMIIANAMHGNGK 398



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 70/267 (26%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M  RD+VSWN ++  Y +   YE+  +LF +M    V                       
Sbjct: 240 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 299

Query: 38  -----------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
                       +P+ +T+ S+L AC  S ++  G E+H +V       DL    AL+ M
Sbjct: 300 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 359

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YAKCG L+ +R + D M  KD V+++ +I    +HG  ++A+ LF               
Sbjct: 360 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFD-------------- 405

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY- 205
                            +M  S V+PN+VT + + S  SH   ++ G +I     ++   
Sbjct: 406 -----------------KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLV 448

Query: 206 --DRNIYVATAIIDTYAKTGFLHGAQR 230
             D N Y  + ++D Y++ G L+ A +
Sbjct: 449 EPDANHY--SCVVDIYSRAGRLNEAYK 473



 Score = 45.1 bits (105), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++   +I      G  + A+++FD          + +ISA   HG +++A+ +++ +   
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 270 GIQPDPVTFTAVLSACAHSG 289
           GI+PD   F A   ACA SG
Sbjct: 73  GIKPDMPVFLAAAKACAVSG 92


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 278/452 (61%), Gaps = 5/452 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D +SWNSMI+GY+    ++E  ++FR++L    +  D  T+ SVL AC   + +  G E
Sbjct: 239 KDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKE 298

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH   +   +  + ++  AL+ MY+KC  L  A+   D ++++D  +++ +ISGY     
Sbjct: 299 VHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQ 358

Query: 124 VEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +E   +L Q MK     P + TWN +ISG V+N  +E  L L  EMQ S +RP+  T+  
Sbjct: 359 LENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGI 418

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I    +  + +  GK++H ++++  Y+ ++++  A++D YAK G +  A +V++R    +
Sbjct: 419 ILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPN 478

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+   A+++AYA HG   + ++LF  ML NG +PD VTF +VLS+C H+G V+   + F+
Sbjct: 479 LVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFD 538

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M+  Y + PS++HY C+V +LSRA R+ EA E V K+P KP + +WGALL G  I G+V
Sbjct: 539 LMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNV 597

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+   + L E+EP NTGNY+++ANLY+ AGRW + DR R+ +K+ G+ K PG SWIE 
Sbjct: 598 ELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIED 657

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
              +  F++ D S +K+E IY  L+ L   MR
Sbjct: 658 REDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 689



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 23/335 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SW ++++ +   G++EE  +LF E L    +  +      VL+ CG    +  
Sbjct: 120 MPQRNLYSWTAILSVHVDHGYFEEALSLF-EKLQLDDIGLEFFVFPVVLKLCGGLRVLEL 178

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI+                  +C  +  A  +    S K+ VSY+ +I GY  
Sbjct: 179 GRQLHGVVIK------------------RCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 220

Query: 121 HGFVEKAMDLFQVMKRPGLST--WNAVISGLVQNNRHEAVLDLVRE-MQASGVRPNAVTI 177
           +G VEKA +LF  M+  G  T  WN++ISG   N   +  L + R+ +   G+  ++ T+
Sbjct: 221 NGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTL 280

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+ +  +  ++L+ GKE+H  AV      N +V  A+++ Y+K   L  AQ  FD    
Sbjct: 281 GSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTE 340

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R    W  +IS YA         +L  +M  +G +P+  T+  ++S    +G  + A  +
Sbjct: 341 RDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRL 400

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           F  M     ++P +     ++   +R   I+   +
Sbjct: 401 FTEMQTS-SLRPDIYTVGIILPACARLATIARGKQ 434



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 24/249 (9%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D  T  S+L++C     +  G +VH   +++      ++   L+ MY + G LD A  + 
Sbjct: 61  DSSTYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
            +M  ++  S++AI+S ++ HG+ E+A+ LF+ ++   +     V   +++      VL+
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLE 177

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L R++    ++  A  + S   +FS            G++VKN    N      +I  Y 
Sbjct: 178 LGRQLHGVVIKRCA-DMGSALKIFS------------GFSVKNVVSYN-----TMIVGYC 219

Query: 221 KTGFLHGAQRVFDRFK--GRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVT 277
           + G +  A+ +FD+ +  G+  I W ++IS YA +    +A+S+F ++L   GI+ D  T
Sbjct: 220 ENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFT 279

Query: 278 FTAVLSACA 286
             +VL+ACA
Sbjct: 280 LGSVLAACA 288



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 22/232 (9%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S+  SL      L  GK++H + +K  +  + +V T ++  Y + G L  A  VF +   
Sbjct: 63  STYASLLESCRTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQ 122

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+L  WTAI+S +  HG   +A+SLF ++  + I  +   F  VL  C   GL  +  ++
Sbjct: 123 RNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCG--GL--RVLEL 178

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              + G                V+ R   +  A +  S   VK +   +  ++ G   +G
Sbjct: 179 GRQLHGV---------------VIKRCADMGSALKIFSGFSVK-NVVSYNTMIVGYCENG 222

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA-DRVREQMKESGL 408
           +VE  K + D + E+  ++T ++  M + Y+    +DEA    R+ + E G+
Sbjct: 223 NVEKAKELFDQM-ELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGI 273



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++VS N+M+  Y+  G  +E  ALFR ML +   RPD VT +SVL +C  +  +  
Sbjct: 474 ISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNG-FRPDHVTFLSVLSSCVHAGAVET 532

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
           G E  + +   ++   L     ++ + ++ G LD A  L+ ++  K D V + A++ G +
Sbjct: 533 GHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCV 592

Query: 120 VHGFVE 125
           + G VE
Sbjct: 593 IWGNVE 598


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 281/471 (59%), Gaps = 10/471 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + +++SWN MIAG++  G Y E   +F +M +     PDG T+ SVL A G   D+V G+
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDM-HLRGFEPDGTTISSVLPAVGDLEDLVMGI 270

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H +VI+  +  D  + +ALI MY KC        + D+M   D  S +A I G   +G
Sbjct: 271 LIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNG 330

Query: 123 FVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            VE ++ LF+ +K  G+     +W ++I+   QN R    L+L REMQ +GV+PN+VTI 
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIP 390

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +     + + L  GK  H ++++     ++YV +A+ID YAK G +  ++  FD    +
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L+ W A+I+ YA HG A +A+ +F+ M  +G +PD ++FT VLSAC+ SGL ++    F
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N+MS +YGI+  VEHYACMV +LSRA ++ +A   + +MPV P A VWGALL    +  +
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNN 570

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V LG+   + LFE+EP N GNYI+++N+Y+  G W+E +RVR+ MK  GL K PG SWIE
Sbjct: 571 VSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIE 630

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
               +   +A D S  +  QI   L++L   M++ GY      +L +VEE+
Sbjct: 631 VKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQDVEEQ 681



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 193/410 (47%), Gaps = 12/410 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ S++++I  +S+   +    + F +ML   ++ PD   + S ++AC   S +    +V
Sbjct: 78  NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM-PDNRVLPSAVKACAGLSALKPARQV 136

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H     S    D ++ ++L+ MY KC  +  A  + D M + D VS+SA+++ Y   G V
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196

Query: 125 EKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           ++A  LF  M     +P L +WN +I+G   +  +   + +  +M   G  P+  TISS+
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSV 256

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +L  G  IHGY +K     +  V++A+ID Y K        +VFD+     +
Sbjct: 257 LPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDV 316

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
               A I   + +G    ++ LF ++ + G++ + V++T++++ C+ +G   +A ++F  
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFRE 376

Query: 301 MSGQYGIQPSVEHYACMV---GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           M    G++P+     C++   G ++       A  F  +  +     V  AL+   +  G
Sbjct: 377 MQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCG 435

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
            ++  +   D    I  +N   +  +   Y+  G+  EA  + + M+ SG
Sbjct: 436 RIQASRICFD---GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 103/198 (52%), Gaps = 1/198 (0%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + ++S Y  +     A  +  ++  P + +++ +I    + ++    L    +M   G+ 
Sbjct: 52  TKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM 111

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+   + S     +  S LK  +++HG A  + +D + +V ++++  Y K   +  A RV
Sbjct: 112 PDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR     ++ W+A+++AYA  G   +A  LF+EM ++G+QP+ +++  +++   HSGL 
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 292 DKAWDIFNAMSGQYGIQP 309
            +A  +F  M  + G +P
Sbjct: 232 SEAVLMFLDMHLR-GFEP 248



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 45/235 (19%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L S  ++L   ++ H + +K     + ++AT ++  YA       A  V D     ++  
Sbjct: 22  LNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFS 81

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA---------------- 286
           ++ +I A++       A+S F++ML  G+ PD     + + ACA                
Sbjct: 82  FSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141

Query: 287 ----------HSGLVD---------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
                      S LV           A  +F+ M      +P V  ++ +V   +R   +
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-----FEPDVVSWSALVAAYARQGCV 196

Query: 328 SEATEFVSKM---PVKPSAKVWGALLYGASISG--DVELGKFVCDHLFEIEPENT 377
            EA    S+M    V+P+   W  ++ G + SG     +  F+  HL   EP+ T
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGT 251


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/469 (39%), Positives = 280/469 (59%), Gaps = 10/469 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++SWN MIAG++  G Y E   +F +M +     PDG T+ SVL A G   D+V G+ +
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDM-HLRGFEPDGTTISSVLPAVGDLEDLVMGILI 272

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +VI+  +  D  + +ALI MY KC        + D+M   D  S +A I G   +G V
Sbjct: 273 HGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQV 332

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           E ++ LF+ +K  G+     +W ++I+   QN R    L+L REMQ +GV+PN+VTI  +
Sbjct: 333 ESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCL 392

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                + + L  GK  H ++++     ++YV +A+ID YAK G +  ++  FD    ++L
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ YA HG A +A+ +F+ M  +G +PD ++FT VLSAC+ SGL ++    FN+
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+  VEHYACMV +LSRA ++ +A   + +MPV P A VWGALL    +  +V 
Sbjct: 513 MSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVS 572

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LFE+EP N GNYI+++N+Y+  G W+E +RVR+ MK  GL K PG SWIE  
Sbjct: 573 LGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVK 632

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
             +   +A D S  +  QI   L++L   M++ GY      +L +VEE+
Sbjct: 633 NKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQ 681



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 193/410 (47%), Gaps = 12/410 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ S++++I  +S+   +    + F +ML   ++ PD   + S ++AC   S +    +V
Sbjct: 78  NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM-PDNRVLPSAVKACAGLSALKPARQV 136

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H     S    D ++ ++L+ MY KC  +  A  + D M + D VS+SA+++ Y   G V
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196

Query: 125 EKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           ++A  LF  M     +P L +WN +I+G   +  +   + +  +M   G  P+  TISS+
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSV 256

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +L  G  IHGY +K     +  V++A+ID Y K        +VFD+     +
Sbjct: 257 LPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDV 316

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
               A I   + +G    ++ LF ++ + G++ + V++T++++ C+ +G   +A ++F  
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFRE 376

Query: 301 MSGQYGIQPSVEHYACMV---GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           M    G++P+     C++   G ++       A  F  +  +     V  AL+   +  G
Sbjct: 377 MQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCG 435

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
            ++  +   D    I  +N   +  +   Y+  G+  EA  + + M+ SG
Sbjct: 436 RIQASRICFD---GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 103/198 (52%), Gaps = 1/198 (0%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + ++S Y  +     A  +  ++  P + +++ +I    + ++    L    +M   G+ 
Sbjct: 52  TKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM 111

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+   + S     +  S LK  +++HG A  + +D + +V ++++  Y K   +  A RV
Sbjct: 112 PDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR     ++ W+A+++AYA  G   +A  LF+EM ++G+QP+ +++  +++   HSGL 
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 292 DKAWDIFNAMSGQYGIQP 309
            +A  +F  M  + G +P
Sbjct: 232 SEAVLMFLDMHLR-GFEP 248



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 46/240 (19%)

Query: 179 SIFS-LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +IF+ L S  ++L   ++ H + +K     + ++AT ++  YA       A  V D    
Sbjct: 17  TIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPE 76

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----------- 286
            ++  ++ +I A++       A+S F++ML  G+ PD     + + ACA           
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 287 ---------------HSGLVD---------KAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
                           S LV           A  +F+ M      +P V  ++ +V   +
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-----FEPDVVSWSALVAAYA 191

Query: 323 RARRISEATEFVSKM---PVKPSAKVWGALLYGASISG--DVELGKFVCDHLFEIEPENT 377
           R   + EA    S+M    V+P+   W  ++ G + SG     +  F+  HL   EP+ T
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGT 251



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS-----SDI 58
           +++V WN++IAGY+  G  +E   +F +++     +PD ++   VL AC QS        
Sbjct: 450 KNLVCWNAVIAGYAMHGKAKEAMEIF-DLMQRSGQKPDIISFTCVLSACSQSGLTEEGSY 508

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISG 117
            F      + IE+  +++ + C  ++ + ++ G L+ A A++  M  + D   + A++S 
Sbjct: 509 YFNSMSSKYGIEA--RVEHYAC--MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSS 564

Query: 118 YMVHGFV 124
             VH  V
Sbjct: 565 CRVHNNV 571


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 185/474 (39%), Positives = 283/474 (59%), Gaps = 41/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++ +VSW SMI GY + G  +    LF EM +  V+ PD   V S+L AC  + ++  
Sbjct: 414 MDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV-PDVYAVTSILNACAINGNLKS 472

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++ E++++ + ++ NAL  MYAKCGS+            KD             
Sbjct: 473 GKIVHDYIRENNLETNSFVSNALTDMYAKCGSM------------KD------------- 507

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A D+F  MK+  + +WN +I G  +N+     L L  EMQ    +P+  T++ I
Sbjct: 508 ------AHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACI 560

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L  G+EIHGYA++N Y  + YV  A++D Y K G L  A+ +FD    + L
Sbjct: 561 LPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDL 620

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I+ Y  HG  S+A++ FN+M   GI+PD V+F ++L AC+HSGL+D+ W IFN 
Sbjct: 621 VSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNI 680

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +  I+P++EHYACMV +L+R   + +A +F+  MP+KP A +WGALL G  I  DV+
Sbjct: 681 MKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVK 740

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +FE+EPENTG Y+++AN+Y++A +W+E  ++R+++ + GL K PG SWIE  
Sbjct: 741 LAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIK 800

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLL--DEVEEESA 466
           G +  FVA D S  ++++I L+L+RL   M+EEG      Y LL  DE E+E A
Sbjct: 801 GKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVA 854



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 199/440 (45%), Gaps = 71/440 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ RD++SWNSMI+GY + G  +    +F +ML   V   D  T+V+V  AC     ++ 
Sbjct: 312 LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGV-DIDLATMVNVFVACANIGTLLL 370

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H++ I++  +  ++   N L+ MY+KCG L+ A  + + M +K  VS         
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVS--------- 421

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 W ++I+G V+    +  + L  EM++ GV P+   ++S
Sbjct: 422 ----------------------WTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTS 459

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I +  +   NLK GK +H Y  +N  + N +V+ A+ D YAK G +  A  VF   K + 
Sbjct: 460 ILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF- 298
           +I W  +I  Y  +   ++A++LF EM     +PD  T   +L ACA    +DK  +I  
Sbjct: 520 VISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHG 578

Query: 299 ----NAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------SE 329
               N  S    +  +V       G+L  AR +                         SE
Sbjct: 579 YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE 638

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
           A    ++M    ++P    + ++LY  S SG ++ G  + + +    +IEP N  +Y  M
Sbjct: 639 AINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEP-NLEHYACM 697

Query: 384 ANLYSQAGRWDEADRVREQM 403
            +L ++ G   +A +  + M
Sbjct: 698 VDLLARTGNLVKAHKFIKAM 717



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 147/290 (50%), Gaps = 33/290 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+  I  WN MI+ YS  G Y E   LF++ML   + +P+  T  S+L+     + +  
Sbjct: 211 LSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGI-KPNSYTFSSILKCFAAVARVEE 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  + +        + N+LI  Y     +  A+ L DE++D+D +S++++ISGY+ 
Sbjct: 270 GRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVK 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++ +++F                                +M   GV  +  T+ ++
Sbjct: 330 NGLDDRGIEIFI-------------------------------KMLVFGVDIDLATMVNV 358

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           F   ++   L  GK +H Y++K    DR +     ++D Y+K G L+ A RVF+R   ++
Sbjct: 359 FVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKT 418

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           ++ WT++I+ Y   G +  A+ LF+EM + G+ PD    T++L+ACA +G
Sbjct: 419 VVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAING 468



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 163/395 (41%), Gaps = 68/395 (17%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+LQ C +   I  G  V + +  S + +D  +   L+ MY KCG L   R + D++S+ 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
                                           +  WN +IS    +  +   ++L ++M 
Sbjct: 215 K-------------------------------IFLWNLMISEYSGSGNYGESINLFKQML 243

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G++PN+ T SSI   F+  + ++ G+++HG   K  ++    V  ++I  Y     + 
Sbjct: 244 ELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVR 303

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            AQ++FD    R +I W ++IS Y  +G   + + +F +ML  G+  D  T   V  ACA
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363

Query: 287 HSG----------------LVDKAWDIFNAMSGQYGI---------------QPSVEHYA 315
           + G                 +D+     N +   Y                 + +V  + 
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWT 423

Query: 316 CMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
            M+    R      A +   +M    V P      ++L   +I+G+++ GK V D++ E 
Sbjct: 424 SMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN 483

Query: 373 EPENTGNYI--IMANLYSQAGRWDEADRVREQMKE 405
             E T +++   + ++Y++ G   +A  V   MK+
Sbjct: 484 NLE-TNSFVSNALTDMYAKCGSMKDAHDVFSHMKK 517


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/449 (40%), Positives = 272/449 (60%), Gaps = 4/449 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWNSMI GY + G+  E    +REM     ++PD VT++ V+ +C Q  D+  G E
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREM-KVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 229

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H ++ E+ +K+ + + NAL+ MY KCG+L+ AR L D M++K  VS++ ++ GY   G 
Sbjct: 230 SHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGL 289

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A  LF  M    +  WNA+I G V  NR +  L L  EMQA  + P+ VT+ S  S 
Sbjct: 290 LDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSA 349

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  IH Y  K+    N+ + TA+ID YAK G +  A +VF    GR+ + W
Sbjct: 350 CSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTW 409

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAIIS  A HG+A  A++ F+EM++N + PD VTF  +LSAC H GLV++    F+ MS 
Sbjct: 410 TAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSS 469

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P ++HY+CMV +L RA  + EA E +  MP++  A VWGAL +   I G+V +G+
Sbjct: 470 KFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGE 529

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L +++P ++G Y+++AN+Y +A  W EA + R+ M++ G+ K PG S IE +G +
Sbjct: 530 RAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIV 589

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMRE 452
             F+ +D S  +SEQIY   E L+ L R+
Sbjct: 590 YEFIVRDKSHPQSEQIY---ECLIQLTRQ 615



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 181/358 (50%), Gaps = 10/358 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +  SWN  I G+       E   L++ +L     +PD  T   + +AC + S I  G E+
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              V+      D+++ NA+I +   CG LD AR + D+   +D VS++++I+GY+  G+ 
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE----MQASGVRPNAVTISSI 180
            +A++ ++ MK  G+      + G+V +      LDL RE    ++ +G++      +++
Sbjct: 190 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 249

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             ++    NL+  +++      +  ++ +   T ++  YA++G L  A ++FD    + +
Sbjct: 250 MDMYMKCGNLESARKL----FDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDV 305

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  Y       +A++LFNEM    I PD VT  + LSAC+  G +D    I + 
Sbjct: 306 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 365

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +  ++ +  +V     ++ + ++  +I++A +   ++P + S   W A++ G ++ G+
Sbjct: 366 IE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL-TWTAIISGLALHGN 421



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 155/347 (44%), Gaps = 32/347 (9%)

Query: 75  MDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM 134
           M L + N  + +  KC S+   + +  +M          +++G +  GF    +  F  +
Sbjct: 1   MSLQLINPFLSLLEKCKSISQLKQIQSQM----------VLTGLIEDGFASSRLIAFCAI 50

Query: 135 ----------------KRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPNAVTI 177
                           + P   +WN  I G + + N  EAV+   R +Q  G +P+  T 
Sbjct: 51  SEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTY 110

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +F   +  S ++ G EI G+ +   +D +I+V+ A+I      G L GA+++FD+   
Sbjct: 111 PLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCV 170

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R L+ W ++I+ Y   G A +A++ + EM   GI+PD VT   V+S+CA    +D   + 
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 230

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +  + G++ +V     ++ +  +   +  A +    M  K     W  ++ G + SG
Sbjct: 231 HCYIE-ENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVS-WTTMVVGYAQSG 288

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            +++   + D   E+  ++   +  M   Y  A R  EA  +  +M+
Sbjct: 289 LLDMAWKLFD---EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQ 332



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 34/257 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V WN+MI GY      +E  ALF EM  +  + PD VT+VS L AC Q   +  
Sbjct: 300 MPDKDVVPWNAMIGGYVHANRGKEALALFNEM-QAMNINPDEVTMVSCLSACSQLGALDV 358

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H+++ +  + +++ +  ALI MYAKCG +  A  +  E+  ++ ++++AIISG  +
Sbjct: 359 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 418

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A+  F                                EM  + V P+ VT   +
Sbjct: 419 HGNAHGAIAYFS-------------------------------EMIDNSVMPDEVTFLGL 447

Query: 181 FSLFSHFSNLKGGKE-IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S   H   ++ G++     + K      +   + ++D   + G L  A+ +       +
Sbjct: 448 LSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA 507

Query: 240 -LIIWTAIISAYAAHGD 255
             ++W A+  A   HG+
Sbjct: 508 DAVVWGALFFACRIHGN 524


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 294/474 (62%), Gaps = 14/474 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +D+VSW SM   Y   G   +   LFREM LN   +R + +TV S+L AC     I 
Sbjct: 138 MVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNG--IRANSLTVSSILPACADY--IK 193

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G EVH F++ + ++ ++++ +AL+ MYA    L  AR + D M  +D VS++ +++ Y 
Sbjct: 194 LGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYF 253

Query: 120 VHGFVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           ++   E+ + LF  M++ G+    ++WNA ISG +QN +HE  L ++ +MQ SG++PN +
Sbjct: 254 LNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRI 313

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           TI S     ++  +L+GGKEIHGY  ++ +  ++ + TA++  YAK G L  ++ VF+  
Sbjct: 314 TIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTM 373

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             + ++ W  +I A + HG   +++ LFN+ML++G++P+ VTF  VLS C+HS L D+  
Sbjct: 374 PRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGL 433

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +FN+MS ++ I P  +HY+CMV VLSRA R+ EA +F+ KMP++P+A  WGALL    +
Sbjct: 434 LVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRV 493

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             +VELG      LFEIEP+N GNY++++N+   A +W EA  +R+ M++ GLAK PGRS
Sbjct: 494 YKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRS 553

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           W++    + SFV  D S ++ + IY  L+ +   MR +GY      +L  V++E
Sbjct: 554 WVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQE 607



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 206/410 (50%), Gaps = 47/410 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+ +W  +I+G++Q GF ++   ++  +L+  V RPD   ++SV +AC  S D+V   ++
Sbjct: 41  DLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV-RPDKFVLLSVAKACAASGDLVVAKKI 99

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+  I+     DL + NALI M+ KC  ++ AR + D+M  KD VS++++   Y+  G  
Sbjct: 100 HDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMC 159

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            + + LF                               REM  +G+R N++T+SSI    
Sbjct: 160 RQGILLF-------------------------------REMGLNGIRANSLTVSSILPAC 188

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           + +  +K G+E+HG+ ++N  + N+YV++A+++ YA +  L  A+ VFD    R ++ W 
Sbjct: 189 ADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWN 246

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +++AY  + +  + + LF++M   GI+ +  ++ A +S C  +G  + A  I   M   
Sbjct: 247 VMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDS 306

Query: 305 YGIQPS-VEHYACMVGV--LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            GI+P+ +   + + G   L   R   E   +V +        +  AL+   +  GD+EL
Sbjct: 307 -GIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLEL 365

Query: 362 GKFVCDHLFEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +    H+F   P       N +IMAN  S  G+  E+  +  +M +SG+
Sbjct: 366 SR----HVFNTMPRKDVVAWNTMIMAN--SMHGKGGESLILFNKMLDSGV 409



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 95/173 (54%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I   +  G +++A+ LF  +  P L TW  +ISG  Q+   +  +D+   + +  VRP+
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
              + S+    +   +L   K+IH  A++  +++++ +  A+ID + K  F++GA+ VFD
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
               + ++ WT++   Y   G   + + LF EM  NGI+ + +T +++L ACA
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA 189



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I T   +G L  A  +FD+     L  WT +IS +  HG   KA+ +++ +L+  ++PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
                +V  ACA SG +  A  I +  + Q+G    +     ++ +  + + ++ A    
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDD-AIQFGFNKDLVLGNALIDMFGKCKFVNGARCVF 135

Query: 335 SKMPVKPSAKVWGALLY 351
             M VK     W ++ Y
Sbjct: 136 DDMVVKDVVS-WTSMTY 151


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 285/474 (60%), Gaps = 41/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSW SMIAGY++ G  +    LF EM    +  PD  T+ ++L AC  +  +  
Sbjct: 312 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGI-SPDIFTITTILHACACTGLLEN 370

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VHN++ E+ ++ DL++ NAL+ MYAKCGS+  A ++  EM  KD VS          
Sbjct: 371 GKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS---------- 420

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I G  +N+     L+L  EMQ +  +PN++T++ I
Sbjct: 421 ---------------------WNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACI 458

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L+ G+EIHG+ ++N +  + +VA A++D Y K G L  A+ +FD    + L
Sbjct: 459 LPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 518

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I+ Y  HG  S+A++ FNEM N+GI+PD V+F ++L AC+HSGL+D+ W  FN 
Sbjct: 519 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNM 578

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M     I+P  EHYAC+V +L+RA  +S+A +F+  MP++P A +WGALL G  I  DV+
Sbjct: 579 MRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVK 638

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V +H+FE+EPENTG Y+++AN+Y++A +W+E  ++RE++   GL K PG SWIE  
Sbjct: 639 LAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIK 698

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLL--DEVEEESA 466
           G +  FV  D+S   + +I L+L++    M+EEG      Y L+  D+ E+E A
Sbjct: 699 GKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMA 752



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 193/390 (49%), Gaps = 24/390 (6%)

Query: 31  EMLN-SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           E++N SP    +  T  SVLQ C     I  G  +H+ +  + +++D  + + L+ MY  
Sbjct: 89  ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS--------- 140
           CG L   R + D+++++    ++ +++GY   G   +++ LF+ M+  G+          
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208

Query: 141 ---------TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
                    +WN++ISG V N   E  LDL  +M   G+  +  T+ S+ +  S+   L 
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLL 268

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            G+ +HGYA+K  + + + +   ++D Y+K+G L+ A +VF+    RS++ WT++I+ YA
Sbjct: 269 LGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYA 328

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
             G +  +V LF+EM   GI PD  T T +L ACA +GL++   D+ N +  +  +Q  +
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK-ENKMQSDL 387

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
                ++ + ++   + +A    S+M VK     W  ++ G S +    L     +   E
Sbjct: 388 FVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS-WNTMIGGYSKNS---LPNEALNLFVE 443

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVRE 401
           ++  +  N I MA +          +R +E
Sbjct: 444 MQYNSKPNSITMACILPACASLAALERGQE 473


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 184/470 (39%), Positives = 279/470 (59%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+VSWNSMI  + QGG  EE   LF+EM    V +P+G+T+V VL AC + SD  F
Sbjct: 197 IPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKSDFEF 255

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++  + I   L + NA++ MY KCGS++ A+ L D+M +KD VS++ ++ GY  
Sbjct: 256 GRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAK 315

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV-RPNAVTISS 179
            G  + A  +F  M    ++ WNA+IS   Q  + +  L+L  E+Q S   +P+ VT+ S
Sbjct: 316 IGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVS 375

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S  +    +  G  IH Y  K     N ++ T++ID Y K G L  A  VF   + + 
Sbjct: 376 TLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKD 435

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + +W+A+I+  A HG    A++LF++M  + ++P+ VTFT +L AC+H GLV++    FN
Sbjct: 436 VFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN 495

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YG+ P V+HYACMV +L RA  + EA E + KMP+ P+A VWGALL   +I  +V
Sbjct: 496 QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENV 555

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            L +  C  L E+EP N G Y++++N+Y++AG+WD    +R+ M++ GL K PG S IE 
Sbjct: 556 VLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 615

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            G +  F+  D S   +++IY  L+ ++  +   GYV     LL  VEEE
Sbjct: 616 DGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEE 665



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 208/484 (42%), Gaps = 100/484 (20%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ +WN++I  Y+      +   +F  ML+     PD  T   +++A  +  ++  G   
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+  +  D++I N+LI  YAKCG L     +   +  +D VS++++I+ ++  G  
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCP 218

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E+A++LFQ                               EM+   V+PN +T+  + S  
Sbjct: 219 EEALELFQ-------------------------------EMETQNVKPNGITMVGVLSAC 247

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  S+ + G+ +H Y  +NR   ++ ++ A++D Y K G +  A+R+FD+   + ++ WT
Sbjct: 248 AKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWT 307

Query: 245 -------------------------------AIISAYAAHGDASKAVSLFNEM-LNNGIQ 272
                                          A+ISAY   G   +A+ LF+E+ L+   +
Sbjct: 308 TMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAK 367

Query: 273 PDPVTFTAVLSACAHSGLVD-----------------------------KAWDIFNAMSG 303
           PD VT  + LSACA  G +D                             K  D+  A+  
Sbjct: 368 PDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMV 427

Query: 304 QYGIQ-PSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDV 359
            + ++   V  ++ M+  L+      +A    SKM    VKP+A  +  +L   S  G V
Sbjct: 428 FHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLV 487

Query: 360 ELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           E G+   + +   + + P    +Y  M ++  +AG  +EA  + E+M  +  A + G   
Sbjct: 488 EEGRTFFNQMELVYGVLP-GVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546

Query: 417 IECS 420
             C+
Sbjct: 547 GACT 550



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 139/308 (45%), Gaps = 10/308 (3%)

Query: 107 DEVSYSAIISGYMVHGF--VEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVR 163
           D  S S +I+   +  F  ++ A  +F  +  P L TWN +I     + N H+++L  +R
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            +  S   P+  T   +    S    L  GK  HG  +K     ++++  ++I  YAK G
Sbjct: 126 MLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCG 185

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L    RVF     R ++ W ++I+A+   G   +A+ LF EM    ++P+ +T   VLS
Sbjct: 186 ELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLS 245

Query: 284 ACA-HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
           ACA  S      W   ++   +  I  S+     M+ + ++   + +A     KMP K  
Sbjct: 246 ACAKKSDFEFGRW--VHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402
              W  +L G +  G+ +  + + D    +  ++   +  + + Y Q G+  EA  +  +
Sbjct: 304 VS-WTTMLVGYAKIGEYDAAQGIFD---AMPNQDIAAWNALISAYEQCGKPKEALELFHE 359

Query: 403 MKESGLAK 410
           ++ S  AK
Sbjct: 360 LQLSKTAK 367


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 176/443 (39%), Positives = 267/443 (60%), Gaps = 1/443 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWNS+I GY + G  +E   L+ +M    V+ PD VT++ V+ A  Q  ++  G +
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVM-PDEVTMIGVVSASAQLENLALGRK 277

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  + E  + + + + NAL+ MY KC +++ A+ L + M+ K  VS++ ++ GY   G 
Sbjct: 278 LHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGL 337

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A+ LF  M    +  WNA+I G VQ  R +  L L  EMQAS V P+ +T+ +  S 
Sbjct: 338 LESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSA 397

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  +H Y  K+    N+ + TA++D YAK G +  A +VF+   GR+ + W
Sbjct: 398 CSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAII   A HG    A+S F+EM++ G+ PD +TF  VLSAC H GLVD+  D F  M+ 
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YGI P ++HY+C+V +L RA  + EA E +  MP +P A VWGAL +G+ I G+V +G+
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGE 577

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E++P + G Y+++AN+Y  A  W++A +VR+ M+E G+ K PG S IE +G +
Sbjct: 578 RAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLV 637

Query: 424 QSFVAKDTSGDKSEQIYLILERL 446
             F+ +D S  +SE+IY  L RL
Sbjct: 638 YDFIIRDKSHPQSEKIYECLTRL 660



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 66/385 (17%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ SWN  I GY +         L+R ML      PD  T   + + C   S      E+
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              VI+     DL++ NA+I +   CG L  AR L DE   +D VS              
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVS-------------- 223

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++I+G V+    +   DL  +M    V P+ VT+  + S  
Sbjct: 224 -----------------WNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSAS 266

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT-------------------------- 218
           +   NL  G+++H    +   +  + +A A++D                           
Sbjct: 267 AQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWT 326

Query: 219 -----YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
                YAK G L  A R+F+    + +++W A+I  +     + +A++LF+EM  + + P
Sbjct: 327 TMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAP 386

Query: 274 DPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           D +T    LSAC+  G +D   W   +    ++ +  +V     +V + ++   I +A +
Sbjct: 387 DKITVVNCLSACSQLGALDVGIW--MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQ 444

Query: 333 FVSKMPVKPSAKVWGALLYGASISG 357
              +MP + S   W A++ G ++ G
Sbjct: 445 VFEEMPGRNSL-TWTAIICGLALHG 468



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 67/289 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQ--------------------------GGFYE-----ECKALF 29
           M+K+ +VSW +M+ GY++                          GGF +     E  ALF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            EM  S V  PD +TVV+ L AC Q   +  G+ +H++V + ++ M++ +  AL+ MYAK
Sbjct: 377 HEMQASSV-APDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAK 435

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG++  A  + +EM  ++ ++++AII G  +HG    A+  F                  
Sbjct: 436 CGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS----------------- 478

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DR 207
                         EM + G+ P+ +T   + S   H   +  G++ + Y + ++Y    
Sbjct: 479 --------------EMISIGLVPDEITFIGVLSACCHGGLVDQGRD-YFYQMTSKYGISP 523

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD 255
            +   + ++D   + GFL  A+ +          ++W A+      HG+
Sbjct: 524 KLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGN 572


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 176/443 (39%), Positives = 267/443 (60%), Gaps = 1/443 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWNS+I GY + G  +E   L+ +M    V+ PD VT++ V+ A  Q  ++  G +
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVM-PDEVTMIGVVSASAQLENLALGRK 277

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  + E  + + + + NAL+ MY KC +++ A+ L + M+ K  VS++ ++ GY   G 
Sbjct: 278 LHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGL 337

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A+ LF  M    +  WNA+I G VQ  R +  L L  EMQAS V P+ +T+ +  S 
Sbjct: 338 LESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSA 397

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  +H Y  K+    N+ + TA++D YAK G +  A +VF+   GR+ + W
Sbjct: 398 CSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAII   A HG    A+S F+EM++ G+ PD +TF  VLSAC H GLVD+  D F  M+ 
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YGI P ++HY+C+V +L RA  + EA E +  MP +P A VWGAL +G+ I G+V +G+
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGE 577

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E++P + G Y+++AN+Y  A  W++A +VR+ M+E G+ K PG S IE +G +
Sbjct: 578 RAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLV 637

Query: 424 QSFVAKDTSGDKSEQIYLILERL 446
             F+ +D S  +SE+IY  L RL
Sbjct: 638 YDFIIRDKSHPQSEKIYECLTRL 660



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 156/382 (40%), Gaps = 66/382 (17%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           SWN  I GY +         L+R ML      PD  T   + + C   S      E+   
Sbjct: 121 SWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGH 180

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI+     DL++ NA+I +   CG L  AR L DE   +D VS                 
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVS----------------- 223

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WN++I+G V+    +   DL  +M    V P+ VT+  + S  +  
Sbjct: 224 --------------WNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQL 269

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDT----------------------------- 218
            NL  G+++H    +   +  + +A A++D                              
Sbjct: 270 ENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMV 329

Query: 219 --YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YAK G L  A R+F+    + +++W A+I  +     + +A++LF+EM  + + PD +
Sbjct: 330 IGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKI 389

Query: 277 TFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           T    LSAC+  G +D   W   +    ++ +  +V     +V + ++   I +A +   
Sbjct: 390 TVVNCLSACSQLGALDVGIW--MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFE 447

Query: 336 KMPVKPSAKVWGALLYGASISG 357
           +MP + S   W A++ G ++ G
Sbjct: 448 EMPGRNSL-TWTAIICGLALHG 468



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 67/289 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQ--------------------------GGFYE-----ECKALF 29
           M+K+ +VSW +M+ GY++                          GGF +     E  ALF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            EM  S V  PD +TVV+ L AC Q   +  G+ +H++V + ++ M++ +  AL+ MYAK
Sbjct: 377 HEMQASSV-APDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAK 435

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG++  A  + +EM  ++ ++++AII G  +HG    A+  F                  
Sbjct: 436 CGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS----------------- 478

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DR 207
                         EM + G+ P+ +T   + S   H   +  G++ + Y + ++Y    
Sbjct: 479 --------------EMISIGLVPDEITFIGVLSACCHGGLVDQGRD-YFYQMTSKYGISP 523

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD 255
            +   + ++D   + GFL  A+ +          ++W A+      HG+
Sbjct: 524 KLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGN 572


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/479 (38%), Positives = 286/479 (59%), Gaps = 19/479 (3%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+  WN M++GY+  G +++   +FR+M+   V +P+ +T+ S + AC   S +  G E
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGRE 233

Query: 64  VHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI--ISGYMV 120
           +H + I+   +  DL + N+L+  YAKC S++ AR     +   D VS++A+  ++G+  
Sbjct: 234 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293

Query: 121 HGFVEKAMDLFQVMKRPG-----LST-----WNAVISGLVQNNRHEAVLDLVREMQASGV 170
           +G  + A++ FQ M         LST     WN++IS   Q+ R    LDL+REM  S V
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             N VT+ S     S  + L+ GKEIH + ++   D   ++  ++ID Y + G +  ++R
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +FD    R L+ W  +IS Y  HG    AV+LF +    G++P+ +TFT +LSAC+HSGL
Sbjct: 414 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGL 473

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           +++ W  F  M  +Y + P+VE YACMV +LSRA + +E  EF+ KMP +P+A VWG+LL
Sbjct: 474 IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 533

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               I  + +L ++   +LFE+EP+++GNY++MAN+YS AGRW++A ++R  MKE G+ K
Sbjct: 534 GACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTK 593

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            PG SWIE    L SFV  DTS    EQI   +E L   ++E GYV     +L +V+E+
Sbjct: 594 PPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDED 652



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 198/420 (47%), Gaps = 48/420 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++ SW +++  Y   G YEE   LF  M+N  V RPD      V +AC +  +   
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFPKVFKACSELKNYRV 129

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V+++++    + +  +  +++ M+ KCG +D AR   +E+  KD   ++ ++SGY  
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  +KA+++F                               R+M   GV+PN++TI+S 
Sbjct: 190 KGEFKKALNVF-------------------------------RKMVLEGVKPNSITIASA 218

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  ++ S L+ G+EIHGY +K    D ++ V  +++D YAK   +  A+R F   K   
Sbjct: 219 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 278

Query: 240 LIIWTAI--ISAYAAHGDASKAVSLFNEM------LNNGIQPDPVTFTAVLSACAHSGLV 291
           L+ W A+  ++ +  +GD   A+  F  M       +     D V + +++SACA SG  
Sbjct: 279 LVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRS 338

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGV--LSRARRISEATEFVSKMPVKPSAKVWGAL 349
             A D+   M+       +V   + +     L+  R+  E  +F+ +  +     +  +L
Sbjct: 339 VNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSL 398

Query: 350 LYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +      G ++  +     +F++ P+ +  ++ +M ++Y   G   +A  + +Q +  GL
Sbjct: 399 IDMYGRCGSIQKSR----RIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 127/251 (50%), Gaps = 31/251 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+LQ C +  ++  G +VH  ++ + + +  ++ + L+ +Y + G ++ AR + D+MS++
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           +  S++AI+  Y   G  E+ + LF +M                           V E  
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLM---------------------------VNE-- 105

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             GVRP+      +F   S   N + GK+++ Y +   ++ N  V  +I+D + K G + 
Sbjct: 106 --GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 163

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+R F+  + + + +W  ++S Y + G+  KA+++F +M+  G++P+ +T  + +SAC 
Sbjct: 164 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACT 223

Query: 287 HSGLVDKAWDI 297
           +  L+    +I
Sbjct: 224 NLSLLRHGREI 234



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +SI        NL+ G ++H   V N  D   ++ + +++ Y +TG +  A+R+FD+   
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 73

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R++  WTAI+  Y   GD  + + LF  M+N G++PD   F  V  AC+         D+
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 298 FNAM-----SGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           ++ M      G   ++ S+       G +  ARR  E  EF
Sbjct: 134 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 174


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 278/455 (61%), Gaps = 33/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R +V+W S+IA Y++ G  +E   LF EM    V  PD  T+ +VL AC  +  +  
Sbjct: 59  MSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGV-SPDIFTITTVLHACACNGSLEN 117

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VHN++ E+ ++ ++++CNAL+ MYAKCGS++ A ++  EM  KD +S++ +I GY  
Sbjct: 118 GKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSK 177

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +    +A+ LF                            D+V EM     +P+  T++ I
Sbjct: 178 NSLPNEALSLFG---------------------------DMVLEM-----KPDGTTLACI 205

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  GKE+HG+ ++N +  +  VA A++D Y K G    A+ +FD    + L
Sbjct: 206 LPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDL 265

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT +I+ Y  HG  + A++ FNEM   GI+PD V+F ++L AC+HSGL+D+ W  FN 
Sbjct: 266 ITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNV 325

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +  ++P +EHYAC+V +L+R+ +++ A +F+  MP++P A +WGALL G  I  DV+
Sbjct: 326 MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVK 385

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V +H+FE+EPENTG Y+++AN Y++A +W+E  ++R+++   GL K PG SWIE  
Sbjct: 386 LAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVK 445

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F+A ++S  ++++I ++L+RL   M+EEGY
Sbjct: 446 SKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGY 480



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 136/286 (47%), Gaps = 39/286 (13%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           +VS+LQAC    D+  G  VH   +++ +      CN L+ MYAKCG LD A  + D MS
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +  V+++++I+ Y   G  ++A+ LF                                E
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFH-------------------------------E 89

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   GV P+  TI+++    +   +L+ GK++H Y  +N    NI+V  A++D YAK G 
Sbjct: 90  MDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGS 149

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A  VF     + +I W  +I  Y+ +   ++A+SLF +M+   ++PD  T   +L A
Sbjct: 150 MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPA 208

Query: 285 CAHSGLVDKAWDIFNAM------SGQYGIQPSVEHYA-CMVGVLSR 323
           CA    +D+  ++   +      S Q      V+ Y  C V VL+R
Sbjct: 209 CASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLAR 254



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 3/213 (1%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    ++  ++  G+ +HG  VK            ++D YAK G L GA  VFD    R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +++ WT++I+AYA  G + +A+ LF+EM   G+ PD  T T VL ACA +G ++   D+ 
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI-SG 357
           N +  +  +Q ++     ++ + ++   + +A     +MPVK     W  ++ G S  S 
Sbjct: 123 NYIR-ENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS-WNTMIGGYSKNSL 180

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390
             E      D + E++P+ T    I+    S A
Sbjct: 181 PNEALSLFGDMVLEMKPDGTTLACILPACASLA 213


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/469 (37%), Positives = 276/469 (58%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VS+N++IAGY+Q G YE+   + REM  S  L+PD  T+ SVL    +  D++ 
Sbjct: 166 MPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD-LKPDAFTLSSVLPIFSEYVDVLK 224

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +VI   I  D++I ++L+ MYAK   ++ +  +   +  +D +S          
Sbjct: 225 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSIS---------- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++G VQN R+   L L R+M ++ VRP AV  SS+
Sbjct: 275 ---------------------WNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSV 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY ++  + RNI++A+A++D Y+K G +  A+++FDR      
Sbjct: 314 IPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDE 373

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTAII  +A HG   +AVSLF EM   G++P+ V F AVL+AC+H GLVD+AW  FN+
Sbjct: 374 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 433

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG+   +EHYA +  +L RA ++ EA +F+SKM V+P+  VW  LL   S+  ++E
Sbjct: 434 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLE 493

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +F I+ EN G Y++M N+Y+  GRW E  ++R ++++ GL K P  SWIE  
Sbjct: 494 LAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMK 553

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                FV+ D S    ++I   L+ ++  M +EGYV     +L +V+EE
Sbjct: 554 NKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEE 602



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 176/353 (49%), Gaps = 36/353 (10%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +++W S+I  ++    +    A F EM  S    PD     SVL++C    D+ FG  VH
Sbjct: 70  VLAWKSVIRCFTDQSLFSRALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F++   +  DL+  NAL+ MY+K   +D  R + + M  KD VS               
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVS--------------- 173

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                           +N VI+G  Q+  +E  L +VREM  S ++P+A T+SS+  +FS
Sbjct: 174 ----------------YNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFS 217

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
            + ++  GKEIHGY ++   D ++Y+ ++++D YAK+  +  ++RVF     R  I W +
Sbjct: 218 EYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNS 277

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMSGQ 304
           +++ Y  +G  ++A+ LF +M++  ++P  V F++V+ ACAH   +     +    + G 
Sbjct: 278 LVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 337

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +G    +   + +V + S+   I  A +   +M +      W A++ G ++ G
Sbjct: 338 FGRNIFIA--SALVDMYSKCGNIQAARKIFDRMNLHDEVS-WTAIIMGHALHG 387



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 36/296 (12%)

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S S +IS Y     + +A+ +F+ ++ P +  W +VI      +     L    EM+A
Sbjct: 39  HTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRA 98

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           SG  P+     S+    +   +L+ G+ +HG+ V+   D ++Y   A+++ Y+K   +  
Sbjct: 99  SGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDS 158

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            ++VF+    + ++ +  +I+ YA  G    A+ +  EM  + ++PD  T ++VL   + 
Sbjct: 159 VRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSE 218

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
              V K  +I   +  + GI   V   + +V + +++ RI ++    S +  + S   W 
Sbjct: 219 YVDVLKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSIS-WN 276

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           +L+ G                                  Y Q GR++EA R+  QM
Sbjct: 277 SLVAG----------------------------------YVQNGRYNEALRLFRQM 298


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 282/455 (61%), Gaps = 1/455 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+W+ MI GY Q G + +   LF EM N  V  PD + + +VL ACG++ ++ +
Sbjct: 183 MFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNV-EPDEMMLSTVLSACGRAGNLSY 241

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+F++E++I +D  + +AL+ MYA CGS+D A  L ++M+ K+ V+ +A+++GY  
Sbjct: 242 GKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSK 301

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  +F  M +  L  W+A+ISG  +++  +  L+L  EMQ+ G++P+ VT+ S+
Sbjct: 302 LGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSV 361

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +H   L   K IH +  KN +   + +  A+I+ YAK G L  A+R+FD+   +++
Sbjct: 362 ITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNV 421

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT +ISA+A HGDA  A+  F++M +  I+P+ +TF  VL AC+H+GLV++   IF +
Sbjct: 422 ISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYS 481

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I P   HY CMV +  RA  + EA E V  MP+ P+  +WG+L+    + G++E
Sbjct: 482 MINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIE 541

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F    L E++P++ G ++ ++N+Y++A RW++  +VR+ MK  G++K  G S  E +
Sbjct: 542 LGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELN 601

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F+  D S   +++IY  L  ++  ++  GY
Sbjct: 602 NEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGY 636



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 193/446 (43%), Gaps = 105/446 (23%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           L  E + +  L  D  +   +L+A  +   +V G+E+H    +     D ++   L+ MY
Sbjct: 108 LVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMY 167

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           A CG +  AR + D+M  +D V++S +I GY   G    A+ LF+               
Sbjct: 168 AACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFE--------------- 212

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-- 205
                           EM+   V P+ + +S++ S      NL  GK IH + ++N    
Sbjct: 213 ----------------EMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVV 256

Query: 206 -----------------------------DRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
                                         +N+  +TA++  Y+K G +  A+ VF++  
Sbjct: 257 DPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMV 316

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-W 295
            + L+ W+A+IS YA      +A++LFNEM + GI+PD VT  +V++ACAH G +D+A W
Sbjct: 317 KKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKW 376

Query: 296 -DIFNAMSGQYGIQP----SVEHYACMVGVLSRARRISE--------------------- 329
             +F   +G  G  P     +E YA   G L RARRI +                     
Sbjct: 377 IHLFVDKNGFGGALPINNALIEMYA-KCGSLERARRIFDKMPRKNVISWTCMISAFAMHG 435

Query: 330 ----ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGK-----FVCDHLFEIEPENT 377
               A  F  +M    ++P+   +  +LY  S +G VE G+      + +H   I P++ 
Sbjct: 436 DAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEH--NITPKHV 493

Query: 378 GNYIIMANLYSQAGRWDEADRVREQM 403
            +Y  M +L+ +A    EA  + E M
Sbjct: 494 -HYGCMVDLFGRANLLREALELVEAM 518



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 94/195 (48%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +A+ L  ++     +    +IS   +   ++ A+ +F ++ +P     N  +  L ++  
Sbjct: 43  HAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEE 102

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
            E  L +   M+  G+  +  +   +    S   +L  G EIHG A K  +D + +V T 
Sbjct: 103 PEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTG 162

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           ++  YA  G +  A+ +FD+   R ++ W+ +I  Y   G  + A+ LF EM N  ++PD
Sbjct: 163 LVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPD 222

Query: 275 PVTFTAVLSACAHSG 289
            +  + VLSAC  +G
Sbjct: 223 EMMLSTVLSACGRAG 237


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 276/469 (58%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRDIVSWN++I+G +Q G +E+   + REM N+  LRPD  T+ SVL    +  +++ 
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNAD-LRPDSFTLSSVLPIFAEYVNLLK 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + I +    D++I ++LI MYAKC  +D +  +   +   D +S          
Sbjct: 255 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS---------- 304

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G VQN   +  L   ++M  + ++PN V+ SSI
Sbjct: 305 ---------------------WNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSI 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY +++R+D N+++A+A++D YAK G +  A+ +FD+ +   +
Sbjct: 344 MPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDM 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  YA HG A  A+SLF  M   G++P+ V F AVL+AC+H+GLVD+AW  FN+
Sbjct: 404 VSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNS 463

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y I P +EHYA +  +L R  R+ EA EF+S M ++P+  VW  LL    +  ++E
Sbjct: 464 MTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIE 523

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   LF ++P+N G Y++++N+YS AGRW +A ++R  M++ G+ K P  SWIE  
Sbjct: 524 LAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIK 583

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL-----LDEVEEE 464
             + +FVA D S    ++I   L+ LL  M  EGYVL     L +VEEE
Sbjct: 584 NKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEE 632



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 9/289 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S    ++W S+I  Y+  G +    + F +ML S    PD     SVL++C    D+ FG
Sbjct: 67  SPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFG 125

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA---RALLDEMSDKDEVSYSAIISGY 118
             VH  +I   +  DL+ CNAL+ MY+K  SL+     + + DE    D  S     S Y
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY 185

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G + K   +F++M +  + +WN VISG  QN  HE  L +VREM  + +RP++ T+S
Sbjct: 186 L--GSLRK---VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+  +F+ + NL  GKEIHGYA++N YD ++++ +++ID YAK   +  + RVF      
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 300

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             I W +II+    +G   + +  F +ML   I+P+ V+F++++ ACAH
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAH 349



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 124/304 (40%), Gaps = 34/304 (11%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLS-TWNAVISGLVQNNRHEAVLDLVREMQASGV 170
           S I+S Y     +  ++ +F  +  P  +  W ++I     +      L    +M ASG 
Sbjct: 43  STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGK 102

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK--------- 221
            P+     S+    +   +L+ G+ +HG  ++     ++Y   A+++ Y+K         
Sbjct: 103 YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNT 162

Query: 222 --------------------TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
                               + +L   ++VF+    R ++ W  +IS  A +G    A+ 
Sbjct: 163 YKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 222

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           +  EM N  ++PD  T ++VL   A    + K  +I +  + + G    V   + ++ + 
Sbjct: 223 MVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEI-HGYAIRNGYDADVFIGSSLIDMY 281

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG-KFVCDHLF-EIEPENTGN 379
           ++  R+ ++      +P +     W +++ G   +G  + G KF    L  +I+P +   
Sbjct: 282 AKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSF 340

Query: 380 YIIM 383
             IM
Sbjct: 341 SSIM 344


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 274/448 (61%), Gaps = 5/448 (1%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R ++SWNS+I+GY +   ++E  ++F+ ML    + PD  T+ SVL AC  +  +  G 
Sbjct: 395 ERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGK 454

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H   I   ++ D ++  AL+ MY+KC  L  A+   DE+ +KD  +++A+ISGY    
Sbjct: 455 EIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSN 514

Query: 123 FVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            +E+   L + MK     P + TWN++++GLV+N + +  + L  EMQ S +RP+  T+ 
Sbjct: 515 QIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVG 574

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            I    S  + L+ GK+ H +++K  YD ++++  A++D YAK G L  AQ  +DR    
Sbjct: 575 IILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNP 634

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L+   A+++A A HG   + +SLF  ML  G  PD VTF +VLS+C H G V+   + F
Sbjct: 635 NLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFF 694

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M G Y ++P+++HY  MV +LSR+ ++ EA E + KMPV+  + +WGALL G    G+
Sbjct: 695 DLM-GYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGN 753

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +ELG+   + L E+EP N+GNY+++ANL++ A RW +  RVR  MK+ G+ K PG SWIE
Sbjct: 754 IELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIE 813

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERL 446
               + SF+A D S  ++E+IY  L+ L
Sbjct: 814 DKNEIHSFLACDRSHKRAEEIYATLDYL 841



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 216/420 (51%), Gaps = 22/420 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTV-----VSVLQACGQS 55
           M  R++ SW ++++ Y   G +EE   LF+      VL+ DGV +       V +AC   
Sbjct: 120 MPMRNLHSWKAILSVYLDHGLFEEAFLLFQ------VLQFDGVELDFFVFPLVFKACSGL 173

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +  G ++H  VI+    +++++ NALI MY KCGSLD A+ +L +M ++D V+++++I
Sbjct: 174 GSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVI 233

Query: 116 SGYMVHGFVEKAMDLFQVMKR-----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
           +    +G V +A++  + MK      P + +W+AVI G  QN   E  ++++  MQ  G+
Sbjct: 234 TACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGL 293

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
            PNA T++ +    +    L  GK++HGY  ++ +  N  V  A++D Y + G + GA +
Sbjct: 294 VPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAK 353

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +F +F  ++++    +I  Y   GD SKA  LF+ M   GI+   +++ +++S    + +
Sbjct: 354 IFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFM 413

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWG 347
            D+A+ +F  M  + GI+P       ++   +    + +  E  ++  VK       V G
Sbjct: 414 FDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGG 473

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           AL+   S   D+   +   D + E +   T N +I    Y+++ + +    + E+MK  G
Sbjct: 474 ALVEMYSKCQDLTAAQVAFDEVMEKDVP-TWNALISG--YTRSNQIERIQYLLEKMKGDG 530



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 36/282 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           SVL +C        G +VH   I++    D +I   L+ MYA+CG L  A  L + M  +
Sbjct: 67  SVLDSCKCPK---LGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMR 123

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           +  S+ AI+S Y+ HG  E+A  LFQV                               +Q
Sbjct: 124 NLHSWKAILSVYLDHGLFEEAFLLFQV-------------------------------LQ 152

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             GV  +      +F   S   +++ G+++HG  +K R+  NIYV+ A+ID Y K G L 
Sbjct: 153 FDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLD 212

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSAC 285
            A++V  +   R  + W ++I+A AA+G   +A+    +M + +   P+ V+++AV+   
Sbjct: 213 DAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGF 272

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
           A +G  ++A ++   M  + G+ P+ +  A ++   +R +R+
Sbjct: 273 AQNGYDEEAIEMLFRMQVE-GLVPNAQTLAGVLPACARLQRL 313



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
           K GK++H + +K  +D + ++ T ++  YA+ G L  A  +F+    R+L  W AI+S Y
Sbjct: 76  KLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVY 135

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
             HG   +A  LF  +  +G++ D   F  V  AC+  G V+    + + +  ++    +
Sbjct: 136 LDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQL-HGLVIKFRFCLN 194

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +     ++ +  +   + +A + + KMP + S   W +++   + +G V
Sbjct: 195 IYVSNALIDMYGKCGSLDDAKKVLVKMPERDSV-TWNSVITACAANGMV 242



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 21/235 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++VS N+M+   +  G  EE  +LF+ ML    + PD VT +SVL +C     +  
Sbjct: 631 ISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFI-PDHVTFLSVLSSCVHVGSVET 689

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYM 119
           G E  + +   ++K  L    +++ + ++ G L  A  L+ +M  + D V + A++ G +
Sbjct: 690 GCEFFDLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCV 749

Query: 120 VHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            HG +E     A  L ++   P  S    +++ L    R    L  VR M        + 
Sbjct: 750 THGNIELGEIAAERLIEL--EPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSP 807

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHG 227
             S I          +   EIH +   +R  +    IY     +  + KTG +HG
Sbjct: 808 GCSWI----------EDKNEIHSFLACDRSHKRAEEIYATLDYLALHMKTGIVHG 852


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 270/470 (57%), Gaps = 37/470 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN++I GYS    + E  A F  M    + +P+ +T+VSVL AC     +  
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGI-KPNSITMVSVLPACAHLFALEQ 340

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H + I S  + +  + NAL+ MYAKCG+                            
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAKCGN---------------------------- 372

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V  A  LF+ M +  +  WNA+ISG  Q+      L L  EMQA G++P++  I S+
Sbjct: 373 ---VNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSV 429

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +HF  L+ GK+IHGY +++ ++ N+ V T ++D YAK G ++ AQ++F+R   + +
Sbjct: 430 LPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDV 489

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I AY  HG    A++LF++M   G + D + FTA+L+AC+H+GLVD+    F  
Sbjct: 490 VSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQC 549

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHYAC+V +L RA  + EA   +  M ++P A VWGALL    I  ++E
Sbjct: 550 MKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIE 609

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+    HLFE++P+N G Y++++N+Y++A RW++  ++R+ MKE G+ K PG S +   
Sbjct: 610 LGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVH 669

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEES 465
             +Q+F+  D +  +SEQIY +LE L   MR+ GYV      L +VEEE+
Sbjct: 670 RDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEA 719



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 192/360 (53%), Gaps = 34/360 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+VSWN++IAGYSQ G   E  ALF EM  + + +P+  T+VSV+  C     +  
Sbjct: 181 MPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI-KPNSSTLVSVMPVCAHLLALEQ 239

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H + I S I+ D+ + N L+ MYAKCG+++ A  L + M  +D             
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRD------------- 286

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             +++WNA+I G   N++H   L     MQ  G++PN++T+ S+
Sbjct: 287 ------------------VASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSV 328

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   L+ G++IHGYA+++ ++ N  V  A+++ YAK G ++ A ++F+R   +++
Sbjct: 329 LPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNV 388

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W AIIS Y+ HG   +A++LF EM   GI+PD     +VL ACAH   +++   I + 
Sbjct: 389 VAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI-HG 447

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            + + G + +V     +V + ++   ++ A +   +MP +     W  ++    I G  E
Sbjct: 448 YTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS-WTTMILAYGIHGHGE 506



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 183/359 (50%), Gaps = 42/359 (11%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + + V W   I GY + GF+ +   L+ +M  + +  PD +  +SV++ACG  SD+  G 
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGI-NPDKLVFLSVIKACGSQSDLQAGR 140

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH  +I    + D+ +  AL  MY KCGSL+ AR + D M  +D VS++AII+GY  +G
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
              +A+ LF                                EMQ +G++PN+ T+ S+  
Sbjct: 201 QPYEALALFS-------------------------------EMQVNGIKPNSSTLVSVMP 229

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           + +H   L+ GK+IH YA+++  + ++ V   +++ YAK G ++ A ++F+R   R +  
Sbjct: 230 VCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS 289

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W AII  Y+ +    +A++ FN M   GI+P+ +T  +VL ACAH   +++   I     
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG--- 346

Query: 303 GQYGIQPSVEHY----ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             Y I+   E        +V + ++   ++ A +   +MP K +   W A++ G S  G
Sbjct: 347 --YAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQHG 402


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 274/464 (59%), Gaps = 2/464 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S R IVSWNSMIAGYS+ GF +E   LF+EML   V   D  T+VS+L A  +  ++  
Sbjct: 198 ISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGV-EADVFTLVSLLSASSKHCNLDL 256

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +++ + +++D  + NALI MYAKCG L +A+ + D+M DKD VS++++++ Y  
Sbjct: 257 GRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYAN 316

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A+ +F  M    + +WN++I  LVQ  ++   ++L   M  SGV P+  T+ SI
Sbjct: 317 QGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSI 376

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S+  +L  GK+ H Y   N    ++ +  ++ID YAK G L  A  +F     +++
Sbjct: 377 LSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNV 436

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II A A HG   +A+ +F  M  +G+ PD +TFT +LSAC+HSGLVD     F+ 
Sbjct: 437 VSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDI 496

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I P VEHYACMV +L R   + EA   + KMPVKP   VWGALL    I G++E
Sbjct: 497 MISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLE 556

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + K +   L E+   N+G Y++++N+YS++ RWD+  ++R+ M +SG+ K    S+IE  
Sbjct: 557 IAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEID 616

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL-DEVEE 463
           G    F+  D     S  IY IL++L+  ++  GY     EVEE
Sbjct: 617 GCCYQFMVDDKRHCASTGIYSILDQLMDHLKSVGYPCKSSEVEE 660



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 200/440 (45%), Gaps = 56/440 (12%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N +I GYS      +   LFR+M+++  + P+  T   VL+AC         + VH   
Sbjct: 105 YNHLIRGYSNSNDPMKSLLLFRQMVSAGPM-PNQFTFPFVLKACAAKPFYWEAVIVHAQA 163

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+  +     + NA++  Y  C  +  AR + D++SD+  VS++++I+GY   GF ++A+
Sbjct: 164 IKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAI 223

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ----ASGVRPNAVTISSIFSLF 184
            LFQ M + G+      +  L+  +     LDL R +      +GV  +++  +++  ++
Sbjct: 224 LLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMY 283

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L+  K +         D+++   T++++ YA  G +  A ++F+    ++++ W 
Sbjct: 284 AKCGHLQFAKHV----FDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWN 339

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--------------- 289
           +II      G  ++AV LF+ M  +G+ PD  T  ++LS C+++G               
Sbjct: 340 SIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDN 399

Query: 290 -----------LVD---------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
                      L+D          A DIF  M      + +V  +  ++G L+      E
Sbjct: 400 IITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP-----EKNVVSWNVIIGALALHGFGEE 454

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
           A E    M    + P    +  LL   S SG V++G++  D +   F I P    +Y  M
Sbjct: 455 AIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISP-GVEHYACM 513

Query: 384 ANLYSQAGRWDEADRVREQM 403
            +L  + G   EA  + ++M
Sbjct: 514 VDLLGRGGFLGEAMTLIQKM 533



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 141/368 (38%), Gaps = 71/368 (19%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           V+   ++S  +  G +  A  LF  + +P    +N +I G   +N     L L R+M ++
Sbjct: 72  VTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSA 131

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           G  PN  T   +    +          +H  A+K     +  V  AI+  Y     +  A
Sbjct: 132 GPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSA 191

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA---- 284
           ++VFD    R+++ W ++I+ Y+  G   +A+ LF EML  G++ D  T  ++LSA    
Sbjct: 192 RQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKH 251

Query: 285 ----------------------------------CAHSGLVDKAWD------------IF 298
                                             C H       +D            + 
Sbjct: 252 CNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMV 311

Query: 299 NAMSGQYGIQPSVEHYACM-----------VGVLSRARRISEATEFVSKMP---VKPSAK 344
           NA + Q  ++ +V+ +  M           +  L +  + +EA E   +M    V P   
Sbjct: 312 NAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDA 371

Query: 345 VWGALLYGASISGDVELGK----FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
              ++L   S +GD+ LGK    ++CD++  +      + I   ++Y++ G    A  + 
Sbjct: 372 TLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLI---DMYAKCGALQTAIDIF 428

Query: 401 EQMKESGL 408
             M E  +
Sbjct: 429 FGMPEKNV 436



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 50/270 (18%)

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T  ++  L    S++K  K +H   + +     +     ++    + G L  A  +FD+ 
Sbjct: 38  THQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQI 97

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
              +  ++  +I  Y+   D  K++ LF +M++ G  P+  TF  VL ACA        W
Sbjct: 98  PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFY---W 154

Query: 296 D--IFNAMSGQYGIQPS--------VEHYAC-----------------------MVGVLS 322
           +  I +A + + G+ P           + AC                       M+   S
Sbjct: 155 EAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYS 214

Query: 323 RARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLF------EIE 373
           +     EA     +M    V+       +LL  +S   +++LG+FV  HL+      EI+
Sbjct: 215 KMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFV--HLYIVITGVEID 272

Query: 374 PENTGNYIIMANLYSQAGRWDEADRVREQM 403
              T   I   ++Y++ G    A  V +QM
Sbjct: 273 SIVTNALI---DMYAKCGHLQFAKHVFDQM 299


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 276/469 (58%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRDIVSWN++I+G +Q G +E+   + REM N+  LRPD  T+ SVL    +  +++ 
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNAD-LRPDSFTLSSVLPIFAEYVNLLK 214

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + I +    D++I ++LI MYAKC  +D +  +   +   D +S          
Sbjct: 215 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS---------- 264

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G VQN   +  L   ++M  + ++PN V+ SSI
Sbjct: 265 ---------------------WNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSI 303

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY +++R+D N+++A+A++D YAK G +  A+ +FD+ +   +
Sbjct: 304 MPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDM 363

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  YA HG A  A+SLF  M   G++P+ V F AVL+AC+H+GLVD+AW  FN+
Sbjct: 364 VSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNS 423

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y I P +EHYA +  +L R  R+ EA EF+S M ++P+  VW  LL    +  ++E
Sbjct: 424 MTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIE 483

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   LF ++P+N G Y++++N+YS AGRW +A ++R  M++ G+ K P  SWIE  
Sbjct: 484 LAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIK 543

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL-----LDEVEEE 464
             + +FVA D S    ++I   L+ LL  M  EGYVL     L +VEEE
Sbjct: 544 NKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEE 592



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 54/302 (17%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK---------- 89
           PD     SVL++C    D+ FG  VH  +I   +  DL+ CNAL+ MY+K          
Sbjct: 8   PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGVQ 67

Query: 90  --CGS------------------------LDYARALLDEMSDKDEVS--------YSAII 115
             C S                        LD   A +D+  D +++S        Y  + 
Sbjct: 68  RFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQVNTYKKVF 127

Query: 116 S-GYMVHGFVEKAMD---------LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
             G     + +K  +         +F++M +  + +WN VISG  QN  HE  L +VREM
Sbjct: 128 DEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREM 187

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             + +RP++ T+SS+  +F+ + NL  GKEIHGYA++N YD ++++ +++ID YAK   +
Sbjct: 188 GNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRV 247

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             + RVF        I W +II+    +G   + +  F +ML   I+P+ V+F++++ AC
Sbjct: 248 DDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPAC 307

Query: 286 AH 287
           AH
Sbjct: 308 AH 309



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 217 DTYAK----TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           D Y+K    + +L   ++VF+    R ++ W  +IS  A +G    A+ +  EM N  ++
Sbjct: 134 DVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR 193

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           PD  T ++VL   A    + K  +I +  + + G    V   + ++ + ++  R+ ++  
Sbjct: 194 PDSFTLSSVLPIFAEYVNLLKGKEI-HGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 252

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELG-KFVCDHLF-EIEPENTGNYIIM 383
               +P +     W +++ G   +G  + G KF    L  +I+P +     IM
Sbjct: 253 VFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIM 304


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 180/473 (38%), Positives = 278/473 (58%), Gaps = 11/473 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW SM + Y   G      A+F EM  + V +P+ VT+ S+L AC +  D+  G  
Sbjct: 196 KDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGV-KPNSVTLSSILPACSELKDLKSGRA 254

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F +   +  ++++C+AL+ +YA+C S+  AR + D M  +D VS++ +++ Y  +  
Sbjct: 255 IHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNRE 314

Query: 124 VEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +K + LF  M   G+    +TWNAVI G ++N + E  ++++R+MQ  G +PN +TISS
Sbjct: 315 YDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISS 374

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                S   +L+ GKE+H Y  ++    ++   TA++  YAK G L+ ++ VFD    + 
Sbjct: 375 FLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKD 434

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A A HG+  + + LF  ML +GI+P+ VTFT VLS C+HS LV++   IFN
Sbjct: 435 VVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFN 494

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   + ++P   HYACMV V SRA R+ EA EF+ +MP++P+A  WGALL    +  +V
Sbjct: 495 SMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNV 554

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL K   + LFEIEP N GNY+ + N+   A  W EA   R  MKE G+ K PG SW++ 
Sbjct: 555 ELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQV 614

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESA 466
              + +FV  D +  +S++IY  L+ L   M+  G      YVL D  +EE A
Sbjct: 615 GDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKA 667



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 199/411 (48%), Gaps = 39/411 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D  + +++I+ ++  G   E   L+   L +  ++P     ++V +ACG S D   
Sbjct: 92  IPQPDPTTCSTLISAFTTRGLPNEAIRLYAS-LRARGIKPHNSVFLTVAKACGASGDASR 150

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH+  I   +  D ++ NALI  Y KC  ++ AR + D++  KD VS++++ S Y+ 
Sbjct: 151 VKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVN 210

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G           + R GL+ +                     EM  +GV+PN+VT+SSI
Sbjct: 211 CG-----------LPRLGLAVFC--------------------EMGWNGVKPNSVTLSSI 239

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S   +LK G+ IHG+AV++    N++V +A++  YA+   +  A+ VFD    R +
Sbjct: 240 LPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDV 299

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++AY  + +  K ++LF++M + G++ D  T+ AV+  C  +G  +KA ++   
Sbjct: 300 VSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRK 359

Query: 301 MSGQYGIQP---SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           M    G +P   ++  +     +L   R   E   +V +  +        AL+Y  +  G
Sbjct: 360 MQ-NLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCG 418

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           D+ L + V D +   +     N +I+AN     GR  E   + E M +SG+
Sbjct: 419 DLNLSRNVFDMICRKDVV-AWNTMIIANAMHGNGR--EVLLLFESMLQSGI 466



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 125/312 (40%), Gaps = 73/312 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M  RD+VSWN ++  Y     Y++  ALF +M +  V                       
Sbjct: 294 MPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKA 353

Query: 38  -----------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
                       +P+ +T+ S L AC     +  G EVH +V    +  DL    AL+ M
Sbjct: 354 VEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYM 413

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YAKCG L+ +R + D +  KD V+++ +I    +HG                        
Sbjct: 414 YAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHG------------------------ 449

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY- 205
                N R   VL L   M  SG++PN+VT + + S  SH   ++ G +I     ++   
Sbjct: 450 -----NGRE--VLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLV 502

Query: 206 --DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSL 262
             D N Y    ++D +++ G LH A     R     +   W A++ A   + +   A   
Sbjct: 503 EPDANHY--ACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKIS 560

Query: 263 FNEMLNNGIQPD 274
            N++    I+P+
Sbjct: 561 ANKLFE--IEPN 570


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 175/476 (36%), Positives = 285/476 (59%), Gaps = 14/476 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECK-------ALFREMLNSPVLRPDGVTVVSVLQACG 53
           M  RD+VSWNS+I+GY+  G++ E          LF EM+N    +PD +T+ S+LQACG
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ--FKPDLLTITSILQACG 233

Query: 54  QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
              D+ FG  VH+++I S  + D    N LI MYAKCG+L  ++ +   M  KD VS+++
Sbjct: 234 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 293

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I+ Y+ +G +  ++ +F+ MK   + TWN +I+  V +      L ++  M+  GV P+
Sbjct: 294 MINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 353

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T+ SI  + S  +  + GKEIHG   K   + ++ V   +I+ Y+K G L  + +VF 
Sbjct: 354 MATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK 413

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             K + ++ WTA+ISA   +G+  KAV  F EM   GI PD V F A++ AC+HSGLV++
Sbjct: 414 LMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEE 473

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
             + F+ M   Y I+P +EHYAC+V +LSR+  + +A +F+  MP+KP + +WGALL   
Sbjct: 474 GLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSAC 533

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +SGD E+ + V + + E+ P++TG Y++++N+Y+  G+WD+   +R+ +K  GL K PG
Sbjct: 534 RMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPG 593

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            SW+E    +  F       ++ E++  +L  L GLM +EGY+     +L +++E+
Sbjct: 594 CSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDED 649



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 153/317 (48%), Gaps = 34/317 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WNS+I   +  G + E  +L+ E      L+PD  T  SV+ AC    D      +
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSET-QRIRLQPDTYTFPSVINACAGLLDFEMAKSI 137

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V++     DL+I NALI MY +   LD AR + +EM  +D VS++++ISGY  +G+ 
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY- 196

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN  +    Q+      + L  EM  +  +P+ +TI+SI    
Sbjct: 197 -----------------WNEALEIYYQS------IKLFMEM-VNQFKPDLLTITSILQAC 232

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
            H  +L+ GK +H Y + + Y+ +   +  +I+ YAK G L  +Q VF   K +  + W 
Sbjct: 233 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 292

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I+ Y  +G    ++ +F  M       D +T+  ++++C HS   +    + + M  +
Sbjct: 293 SMINVYIQNGKMGDSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRMRTE 348

Query: 305 YGIQPSVEHYACMVGVL 321
            G+ P +   A M+ +L
Sbjct: 349 -GVTPDM---ATMLSIL 361


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 277/474 (58%), Gaps = 39/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R +VS+ SMIAGY++ G   E   LF EM    +  PD  TV +VL  C ++  +  
Sbjct: 357 MSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARNRLLDE 415

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++ E+ +  D+++ NAL+ MYAKCGS+  A  +  EM  KD +S++ +I GY  
Sbjct: 416 GKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSK 475

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + +  +A+ LF ++              LV+                    P+  T++ +
Sbjct: 476 NCYANEALSLFNLL--------------LVEKR----------------FSPDERTVACV 505

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S    G+EIHGY ++N Y  + +VA +++D YAK G L  A+ +FD    + L
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDL 565

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I+ Y  HG   +A++LFN+M   GI+PD ++F ++L AC+HSGLVD+ W  FN 
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNI 625

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +  I+P+VEHYAC+V +L+R   +S+A  F+  MP+ P A +WGALL G  I  DV+
Sbjct: 626 MRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 685

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +FE+EPENTG Y++MAN+Y++A +W+E  R+R+++ + GL K PG SWIE  
Sbjct: 686 LAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIK 745

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL--------DEVEEESA 466
           G +  FVA D+S  ++E+I   L  +   M EEGY  L        +E+E+E A
Sbjct: 746 GRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEA 799



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 205/441 (46%), Gaps = 72/441 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD++SWNS+I GY   G  E+  ++F +ML S +   D  T+VSV   C  S  I  
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGI-EIDLATIVSVFAGCADSRLISL 314

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH F +++    +   CN L+ MY+KCG LD A+ +  EMS +  VSY+++I+GY  
Sbjct: 315 GRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAR 374

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+ LF+                               EM+  G+ P+  T++++
Sbjct: 375 EGLAGEAVKLFE-------------------------------EMEEEGISPDVYTVTAV 403

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  GK +H +  +N    +I+V+ A++D YAK G +  A+ VF   + + +
Sbjct: 404 LNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDI 463

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W  +I  Y+ +  A++A+SLFN +L      PD  T   VL ACA     DK  +I  
Sbjct: 464 ISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 300 AM------SGQYGIQPSVEHYACMVGVLSRARRI-------------------------S 328
            +      S ++     V+ YA   G L  AR +                          
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYA-KCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGK 582

Query: 329 EATEFVSKMP---VKPSAKVWGALLYGASISGDVELG-KF--VCDHLFEIEPENTGNYII 382
           EA    ++M    ++P    + +LLY  S SG V+ G +F  +  H  +IEP    +Y  
Sbjct: 583 EAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP-TVEHYAC 641

Query: 383 MANLYSQAGRWDEADRVREQM 403
           + ++ ++ G   +A R  E M
Sbjct: 642 IVDMLARTGNLSKAYRFIENM 662



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 32/286 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN ++   ++ G +     LF++M++S V   D  T   V ++      +  G ++H ++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTFSCVSKSFSSLRSVNGGEQLHGYI 221

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++S       + N+L+  Y K   +D AR + DEM+++D +S+++II+GY+ +G  EK +
Sbjct: 222 LKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGL 281

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F                                +M  SG+  +  TI S+F+  +   
Sbjct: 282 SVFV-------------------------------QMLFSGIEIDLATIVSVFAGCADSR 310

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            +  G+ +H + VK  + R       ++D Y+K G L  A+ VF    GRS++ +T++I+
Sbjct: 311 LISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIA 370

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            YA  G A +AV LF EM   GI PD  T TAVL+ CA + L+D+ 
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 176/406 (43%), Gaps = 81/406 (19%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D  T+ SVLQ C  S  +  G EV NF+  +   +D  + + L  MY  CG L  A  + 
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D++                    +EKA+             WN +++ L ++      + 
Sbjct: 153 DQVK-------------------IEKAL------------FWNILMNELAKSGDFSGSIG 181

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L ++M +SGV  ++ T S +   FS   ++ GG+++HGY +K+ +     V  +++  Y 
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYL 241

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K   +  A++VFD    R +I W +II+ Y ++G A K +S+F +ML +GI+ D  T  +
Sbjct: 242 KNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVS 301

Query: 281 VLSACAHSGLV-----------------------------------DKAWDIFNAMSGQY 305
           V + CA S L+                                   D A  +F  MSG+ 
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGR- 360

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELG 362
               SV  Y  M+   +R     EA +   +M    + P      A+L   + +  ++ G
Sbjct: 361 ----SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416

Query: 363 KFVCDHLFEIEPENTGNYIIMAN----LYSQAGRWDEADRVREQMK 404
           K V +    I+  + G  I ++N    +Y++ G   EA+ V  +M+
Sbjct: 417 KRVHEW---IKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMR 459


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 281/474 (59%), Gaps = 39/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M    IVSW S+IA Y + G Y +   LF EM  S  +RPD  TV S++ AC  SS +  
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTVTSIVHACACSSSLDK 415

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH++VI++ +  +L + NALI MYAKCGS++ AR +  ++  KD VS          
Sbjct: 416 GRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS---------- 465

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I G  QN      L+L  +MQ    +P+ +T++ +
Sbjct: 466 ---------------------WNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACV 503

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L  G+EIHG+ ++  Y  +++VA A++D YAK G L  AQ +FD    + L
Sbjct: 504 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 563

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT +I+ Y  HG  ++A+S FNEM   GI+PD  +F+A+L+AC+HSGL+++ W  FN+
Sbjct: 564 ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNS 623

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  + G++P +EHYAC+V +L+R   +S+A +F+  MP+KP   +WG LL G  I  DV+
Sbjct: 624 MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVK 683

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V +H+FE+EP+NT  Y+++AN+Y++A +W+E  ++R++M++ G  + PG SWIE  
Sbjct: 684 LAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVG 743

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESAYV 468
           G    FVA ++   ++++I ++L +L   M+ E       YVL++E + E   +
Sbjct: 744 GKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMI 797



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 192/409 (46%), Gaps = 44/409 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+ D+VSWNSMI G    GF      +F +ML   V   D  T+VSVL AC    ++  
Sbjct: 256 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV-EVDLTTLVSVLVACANIGNLSL 314

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F +++    ++   N L+ MY+KCG+L+ A  +  +M D   VS+++II+ Y+ 
Sbjct: 315 GRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVR 374

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    A+ LF                                EMQ+ GVRP+  T++SI
Sbjct: 375 EGLYSDAIGLFD-------------------------------EMQSKGVRPDIYTVTSI 403

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+L  G+++H Y +KN    N+ V  A+I+ YAK G +  A+ VF +   + +
Sbjct: 404 VHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDI 463

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  Y+ +   ++A+ LF +M     +PD +T   VL ACA    +DK  +I   
Sbjct: 464 VSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGH 522

Query: 301 M--SGQYGIQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASI 355
           +   G +    S  H AC +V + ++   +  A      +P K     W  ++  YG   
Sbjct: 523 ILRRGYF----SDLHVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 577

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            G+  +  F    +  IEP+ +    I+ N  S +G  +E  +    M+
Sbjct: 578 FGNEAISTFNEMRIAGIEPDESSFSAIL-NACSHSGLLNEGWKFFNSMR 625



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 172/346 (49%), Gaps = 34/346 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +++ Y++ G + E  +LF++M    V+  +  T   VL+       +     VH +V
Sbjct: 163 WNLLMSEYAKIGNFRESVSLFKKMQKLGVV-GNCYTFTCVLKCFAALGKVKECKRVHGYV 221

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     +  + N+LI  Y K G ++ A  L DE+S+ D VS++++I+G +V+GF    +
Sbjct: 222 LKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGL 281

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           ++F                                +M   GV  +  T+ S+    ++  
Sbjct: 282 EIFI-------------------------------QMLILGVEVDLTTLVSVLVACANIG 310

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           NL  G+ +HG+ VK  +   +  +  ++D Y+K G L+GA  VF +    +++ WT+II+
Sbjct: 311 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIA 370

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
           AY   G  S A+ LF+EM + G++PD  T T+++ ACA S  +DK  D+ + +  + G+ 
Sbjct: 371 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI-KNGMG 429

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            ++     ++ + ++   + EA    SK+PVK     W  ++ G S
Sbjct: 430 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTMIGGYS 474



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 33/244 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE-MSD 105
           SVLQ C +   +  G  VH+ +I + I +D  +   L+ MY  CG L   R + D+ M+D
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K                                +  WN ++S   +       + L ++M
Sbjct: 159 K--------------------------------VFLWNLLMSEYAKIGNFRESVSLFKKM 186

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q  GV  N  T + +   F+    +K  K +HGY +K  +  N  V  ++I  Y K G +
Sbjct: 187 QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGV 246

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A  +FD      ++ W ++I+    +G +   + +F +ML  G++ D  T  +VL AC
Sbjct: 247 ESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAC 306

Query: 286 AHSG 289
           A+ G
Sbjct: 307 ANIG 310



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+  L +   +L+ GK +H   + N    +  +   ++  Y   G L   +++FD+    
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            + +W  ++S YA  G+  ++VSLF +M   G+  +  TFT VL   A  G V + 
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 214


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/473 (39%), Positives = 272/473 (57%), Gaps = 9/473 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           SK D+V+WN MI+GY++   ++E   LF EM    VL P  +T+VSVL AC +  D+  G
Sbjct: 181 SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVL-PSSITLVSVLSACSKLKDLNVG 239

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             VH +V +  I+    + NALI MYA CG +D A  + D M  +D +S++AI++G+   
Sbjct: 240 KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNL 299

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V  A + F  M      +W A+I G +Q NR + VL L REMQA+ ++P+  T+ SI 
Sbjct: 300 GQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 359

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +H   L+ G+ I  Y  KN    + +V  A+ID Y   G +  A R+F+    R  I
Sbjct: 360 TACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKI 419

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTA+I   A +G   +A+ +F++ML   I PD VT   VL AC HSG+VDK    F  M
Sbjct: 420 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARM 479

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + Q+GI+P+V HY CMV +L RA  + EA E +  MPVKP++ VWG+LL    +  D E+
Sbjct: 480 TTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEM 539

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +     + E+EPEN   Y+++ N+Y+   RW++   VR+ M + G+ K PG S IE +G
Sbjct: 540 AEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNG 599

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLD--EVEEESA 466
            +  FVA D    +S++IY  L+ +   ++  GY      V LD  E E+ESA
Sbjct: 600 SVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESA 652



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 192/462 (41%), Gaps = 100/462 (21%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI GYS+ G      +++ EML   V+ PD  T   +L+   + + +  G E+H+ +
Sbjct: 87  WNNMIKGYSRVGCPNSAVSMYCEMLERGVM-PDEYTYPFLLKRFTRDTAVKCGRELHDHI 145

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     ++++ NALI +Y+  G +  AR + D  S  D V+++ +ISGY      +++M
Sbjct: 146 VKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESM 205

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF                                EM+   V P+++T+ S+ S  S   
Sbjct: 206 KLFD-------------------------------EMERMRVLPSSITLVSVLSACSKLK 234

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L  GK +H Y    + +    +  A+ID YA  G +  A  +FD  K R +I WTAI++
Sbjct: 235 DLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVT 294

Query: 249 AYAAHGDASKA-------------------------------VSLFNEMLNNGIQPDPVT 277
            +   G    A                               +SLF EM    I+PD  T
Sbjct: 295 GFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFT 354

Query: 278 FTAVLSACAHSGLVD-----KAW--------DIF--NAMSGQYGIQPSVEHYACMVGVLS 322
             ++L+ACAH G ++     KA+        D F  NA+   Y    +VE    +   + 
Sbjct: 355 MVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP 414

Query: 323 RARRIS---------------EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKF 364
              +IS               EA +  S+M    + P       +L   + SG V+ GK 
Sbjct: 415 HRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKK 474

Query: 365 VCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
               +     IEP N  +Y  M +L  +AG   EA  V + M
Sbjct: 475 FFARMTTQHGIEP-NVAHYGCMVDLLGRAGHLKEAHEVIKNM 515



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW +MI GY Q   ++E  +LFREM  +  ++PD  T+VS+L AC     +  
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREM-QAANIKPDEFTMVSILTACAHLGALEL 370

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++ ++ IK+D ++ NALI MY  CG+++ A  + + M  +D++S++A+I G  +
Sbjct: 371 GEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAI 430

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD-----LVREMQASGVRPNAV 175
           +G+ E+A+D+F  M +  ++       G++    H  ++D       R     G+ PN  
Sbjct: 431 NGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVA 490

Query: 176 TISSIFSLFSHFSNLKGGKEI 196
               +  L     +LK   E+
Sbjct: 491 HYGCMVDLLGRAGHLKEAHEV 511



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +E A  +F  M  P    WN +I G  +     + + +  EM   GV P+  T   + 
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
             F+  + +K G+E+H + VK  +  N++V  A+I  Y+ +G +  A+ VFDR     ++
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            W  +IS Y       +++ LF+EM    + P  +T  +VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 174/474 (36%), Positives = 280/474 (59%), Gaps = 39/474 (8%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M    IVSW S IA Y + G Y +   LF EM  S  +RPD  TV S++ AC  SS +  
Sbjct: 632  MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTVTSIVHACACSSSLDK 690

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G +VH++VI++ +  +L + NALI MYAKCGS++ AR +  ++  KD V           
Sbjct: 691  GRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIV----------- 739

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                +WN +I G  QN+     L+L  +MQ    +P+ +T++ +
Sbjct: 740  --------------------SWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACV 778

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                +  + L  G+EIHG+ ++  Y  +++VA A++D YAK G L  AQ +FD    + L
Sbjct: 779  LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 838

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            I WT +I+ Y  HG  ++A+S FNEM   GI+PD  +F+ +L+AC+HSGL+++ W  FN+
Sbjct: 839  ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNS 898

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            M  + G++P +EHYAC+V +L+R   +S+A +F+  MP+KP   +WG LL G  I  DV+
Sbjct: 899  MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVK 958

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            L + V +H+FE+EP+NT  Y+++AN+Y++A +W+E  ++R++M++ G  + PG SWIE  
Sbjct: 959  LAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVG 1018

Query: 421  GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESAYV 468
            G    FVA ++   ++++I ++L +L   M+ E       YVL++E + E   +
Sbjct: 1019 GKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMI 1072



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 191/409 (46%), Gaps = 44/409 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+ D+VSWNSMI G    GF      +F +ML   V   D  T+VSVL A     ++  
Sbjct: 531 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV-EVDLTTLVSVLVAWANIGNLSL 589

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F +++    ++   N L+ MY+KCG+L+ A  +  +M D   VS+++ I+ Y+ 
Sbjct: 590 GRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVR 649

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    A+ LF                                EMQ+ GVRP+  T++SI
Sbjct: 650 EGLYSDAIGLFD-------------------------------EMQSKGVRPDIYTVTSI 678

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+L  G+++H Y +KN    N+ V  A+I+ YAK G +  A+ VF +   + +
Sbjct: 679 VHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDI 738

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  Y+ +   ++A+ LF +M     +PD +T   VL ACA    +DK  +I   
Sbjct: 739 VSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGH 797

Query: 301 M--SGQYGIQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASI 355
           +   G +    S  H AC +V + ++   +  A      +P K     W  ++  YG   
Sbjct: 798 ILRRGYF----SDLHVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 852

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            G+  +  F    +  IEP+ +   +I+ N  S +G  +E  +    M+
Sbjct: 853 FGNEAISTFNEMRIAGIEPDESSFSVIL-NACSHSGLLNEGWKFFNSMR 900



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 172/346 (49%), Gaps = 34/346 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +++ Y++ G + E  +LF++M    V+  +  T   VL+       +     VH +V
Sbjct: 438 WNLLMSEYAKIGNFRESVSLFKKMQKLGVV-GNCYTFTCVLKCFAALGKVKECKRVHGYV 496

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     +  + N+LI  Y K G ++ A  L DE+S+ D VS++++I+G +V+GF    +
Sbjct: 497 LKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGL 556

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           ++F                                +M   GV  +  T+ S+   +++  
Sbjct: 557 EIFI-------------------------------QMLILGVEVDLTTLVSVLVAWANIG 585

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           NL  G+ +HG+ VK  +   +  +  ++D Y+K G L+GA  VF +    +++ WT+ I+
Sbjct: 586 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIA 645

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
           AY   G  S A+ LF+EM + G++PD  T T+++ ACA S  +DK  D+ + +  + G+ 
Sbjct: 646 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI-KNGMG 704

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            ++     ++ + ++   + EA    SK+PVK     W  ++ G S
Sbjct: 705 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTMIGGYS 749



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 33/244 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE-MSD 105
           SVLQ C +   +  G  VH+ +I + I +D  +   L+ MY  CG L   R + D+ M+D
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K                                +  WN ++S   +       + L ++M
Sbjct: 434 K--------------------------------VFLWNLLMSEYAKIGNFRESVSLFKKM 461

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q  GV  N  T + +   F+    +K  K +HGY +K  +  N  V  ++I  Y K G +
Sbjct: 462 QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGV 521

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A  +FD      ++ W ++I+    +G +   + +F +ML  G++ D  T  +VL A 
Sbjct: 522 ESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAW 581

Query: 286 AHSG 289
           A+ G
Sbjct: 582 ANIG 585



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+  L +   +L+ GK +H   + N    +  +   ++  Y   G L   +++FD+    
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            + +W  ++S YA  G+  ++VSLF +M   G+  +  TFT VL   A  G V + 
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 489


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 277/470 (58%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+VSWNSMI G+ Q G  ++   LF++M  S  ++   VT+V VL AC +  D+ F
Sbjct: 194 IKEKDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRDLEF 252

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V +++ E+ + ++L + NA++ MY KCGS++ A+ L D M +KD V+++ ++ GY +
Sbjct: 253 GRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 312

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISS 179
               E A ++   M +  +  WNA+IS   QN +    L +  E+Q    ++ N +T+ S
Sbjct: 313 SEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVS 372

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S  +    L+ G+ IH Y  KN    N YV +A+I  Y+K G L  A+ VF+  + R 
Sbjct: 373 TLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRD 432

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + +W+A+I   A HG  S+AV +F +M    ++P+ VTFT V  AC+H+GLVD+A  +F 
Sbjct: 433 VFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFY 492

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI P  +HYAC+V VL R+  + +A +F+  MP+ PS  VWGALL    I  ++
Sbjct: 493 KMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 552

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            L +  C  L E+EP N G +++++N+Y+++G+WD    +R+ M+ +GL K PG S IE 
Sbjct: 553 SLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEI 612

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            G +  F++ D +   SE++Y  L  ++  ++  GY      +L  +EEE
Sbjct: 613 DGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEE 662



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 198/454 (43%), Gaps = 84/454 (18%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           +WN++I  Y+ G         F +M++S     P+  T   +++A  + S +  G  +H 
Sbjct: 98  TWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG 157

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
             I+S +  D+++ N+LI  Y  CG LD                                
Sbjct: 158 MAIKSAVGSDVFVANSLIHCYFSCGDLD-------------------------------S 186

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F  +K   + +WN++I+G VQ    +  L+L ++M++  V+ + VT+  + S  + 
Sbjct: 187 ACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK 246

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT-- 244
             +L+ G+ +  Y  +NR + N+ +A A++D Y K G +  A+R+FD  + +  + WT  
Sbjct: 247 IRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM 306

Query: 245 -----------------------------AIISAYAAHGDASKAVSLFNEM-LNNGIQPD 274
                                        A+ISAY  +G  ++A+ +F+E+ L   I+ +
Sbjct: 307 LDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLN 366

Query: 275 PVTFTAVLSACAHSGLVD-----KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            +T  + LSACA  G ++      ++   N +   + +  ++ H     G L +AR +  
Sbjct: 367 QITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFN 426

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLY- 387
           + E       K    VW A++ G ++ G    G    D  ++++  N   N +   N++ 
Sbjct: 427 SVE-------KRDVFVWSAMIGGLAMHG---CGSEAVDMFYKMQEANVKPNGVTFTNVFC 476

Query: 388 --SQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
             S  G  DEA+ +  +M ES    +P      C
Sbjct: 477 ACSHTGLVDEAESLFYKM-ESSYGIVPEDKHYAC 509


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/469 (37%), Positives = 275/469 (58%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN++IAG ++ G Y E   + REM     L+PD  T+ SVL    ++ DI  
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREM-GGANLKPDSFTLSSVLPLIAENVDISK 318

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   I   +  ++++ ++LI MYAKC                     + ++  Y V
Sbjct: 319 GKEIHGCSIRQGLDAEVYVASSLIDMYAKC---------------------TRVVDSYRV 357

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +          +R G+S WN++I+G VQN   +  L   R+M  + ++P + + SSI
Sbjct: 358 FTLL---------TERDGIS-WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSI 407

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY  +N +D NI++A++++D YAK G +  A+++FDR + R +
Sbjct: 408 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDM 467

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I   A HG A  A+ LF +M   GI+P+ V F AVL+AC+H+GLVD+AW  FN+
Sbjct: 468 VSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNS 527

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI P VEHYA +  +L RA R+ EA +F+  MP+ P+  VW  LL    +  +V+
Sbjct: 528 MTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVD 587

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + + V + + E++P+NTG YI++AN+YS A RW EA + R  ++ +G+ K P  SWIE  
Sbjct: 588 MAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVR 647

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F+A D S    E+I   +E L+ LM +EGYV     +  +VEEE
Sbjct: 648 NKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEE 696



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 13/279 (4%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+    +F++M    L +WN +I+G  +N  +   L +VREM  + ++P++ T+SS+  L
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   ++  GKEIHG +++   D  +YVA+++ID YAK   +  + RVF     R  I W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            +II+    +G   + +  F +ML   I+P   +F++++ ACAH   +     +   ++ 
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT- 428

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           + G   ++   + +V + ++   I  A +   +M ++     W A++ G ++ G      
Sbjct: 429 RNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHGHA---- 483

Query: 364 FVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEA 396
                LFE      IEP N   ++ +    S AG  DEA
Sbjct: 484 LDAIELFEQMKTEGIEP-NYVAFMAVLTACSHAGLVDEA 521



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 8/107 (7%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           ++W S+I  Y+  G   +    F  ML S  L PD     SVL+AC    D+  G  +H 
Sbjct: 74  LAWKSVIRCYTSHGLPHKSLGSFIGMLASG-LYPDHNVFPSVLKACAMLMDLNLGESLHG 132

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDY-------ARALLDEMSDK 106
           ++I   +  DL+  NAL+ MY+K   L         A  +LDEM+++
Sbjct: 133 YIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTER 179



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +  ++ LF  +  P    W +VI     +      L     M ASG+ P+     S+  
Sbjct: 57  LLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLK 116

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH-------GAQRVFDRF 235
             +   +L  G+ +HGY ++   D ++Y   A+++ Y+K  FL        GA +V D  
Sbjct: 117 ACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEM 176

Query: 236 KGRSLIIWTAII 247
             R+  + TA +
Sbjct: 177 TERTRSVRTASV 188



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y+    LH + R+F+       + W ++I  Y +HG   K++  F  ML +G+ PD   F
Sbjct: 52  YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111

Query: 279 TAVLSACA 286
            +VL ACA
Sbjct: 112 PSVLKACA 119


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/465 (37%), Positives = 268/465 (57%), Gaps = 37/465 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI++WN ++ G++Q G  +     F+ M +S  + P+  T+   L ACGQ  ++  G E+
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEI 521

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +V+ +HI++   + +ALI MY+ C SL+ A ++  E+S +D V               
Sbjct: 522 HGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV--------------- 566

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++IS   Q+ R    LDL+REM  S V  N VT+ S     
Sbjct: 567 ----------------VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 610

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S  + L+ GKEIH + ++   D   ++  ++ID Y + G +  ++R+FD    R L+ W 
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 670

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS Y  HG    AV+LF +    G++P+ +TFT +LSAC+HSGL+++ W  F  M  +
Sbjct: 671 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y + P+VE YACMV +LSRA + +E  EF+ KMP +P+A VWG+LL    I  + +L ++
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 790

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              +LFE+EP+++GNY++MAN+YS AGRW++A ++R  MKE G+ K PG SWIE    L 
Sbjct: 791 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           SFV  DTS    EQI   +E L   ++E GYV     +L +V+E+
Sbjct: 851 SFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDED 895



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 209/446 (46%), Gaps = 50/446 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++ SW +++  Y   G YEE   LF  M+N  V RPD      V +AC +  +   
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFPKVFKACSELKNYRV 208

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V+++++    + +  +  +++ M+ KCG +D AR   +E+  KD   ++ ++SGY  
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAV------------------ 158
            G  +KA+     MK    +P   TWNA+ISG  Q+ + E                    
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 159 ------------------LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
                             L + R+M   GV+PN++TI+S  S  ++ S L+ G+EIHGY 
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 201 VK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           +K    D ++ V  +++D YAK   +  A+R F   K   L+ W A+++ YA  G   +A
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           + L +EM   GI+PD +T+  +++     G    A + F  M    G+ P+    +  + 
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTTISGALA 507

Query: 320 VLSRARRISEATE---FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
              + R +    E   +V +  ++ S  V  AL+   S    +E+    C    E+   +
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVA---CSVFSELSTRD 564

Query: 377 TGNYIIMANLYSQAGRWDEA-DRVRE 401
              +  + +  +Q+GR   A D +RE
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLRE 590



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 39/348 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFRE--MLNS-PVLRPDGVTVV--SVLQACGQSSDI 58
           R + +    I G+S GG       L     +L+S  +  PD    +  S+LQ C +  ++
Sbjct: 46  RKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNL 105

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G +VH  ++ + + +  ++ + L+ +Y + G ++ AR + D+MS+++  S++AI+  Y
Sbjct: 106 RLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMY 165

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G  E+ + LF +M                           V E    GVRP+     
Sbjct: 166 CGLGDYEETIKLFYLM---------------------------VNE----GVRPDHFVFP 194

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +F   S   N + GK+++ Y +   ++ N  V  +I+D + K G +  A+R F+  + +
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + +W  ++S Y + G+  KA+   ++M  +G++PD VT+ A++S  A SG  ++A   F
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSA 343
             M G    +P+V  +  ++    +     EA     KM    VKP++
Sbjct: 315 LEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 17/234 (7%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +SI        NL+ G ++H   V N  D   ++ + +++ Y +TG +  A+R+FD+   
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R++  WTAI+  Y   GD  + + LF  M+N G++PD   F  V  AC+         D+
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 298 FNAM-----SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           ++ M      G   ++ S+       G +  ARR  E  EF           +W  ++ G
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF-------KDVFMWNIMVSG 265

Query: 353 ASISGDVELG-KFVCD-HLFEIEPEN-TGNYIIMANLYSQAGRWDEADRVREQM 403
            +  G+ +   K + D  L  ++P+  T N II    Y+Q+G+++EA +   +M
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG--YAQSGQFEEASKYFLEM 317


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 265/449 (59%), Gaps = 19/449 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWNSMI GY + G+  E    +REM     ++PD VT++ V+ +C Q  D+  G E
Sbjct: 143 RDLVSWNSMINGYVRRGWAYEALNFYREM-KVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 201

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H ++ E+ +K+ + + NAL+ MY KCG+L+ AR L D M++K  VS++ +         
Sbjct: 202 SHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM--------- 252

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                 LF  M    +  WNA+I G V  NR +  L L  EMQA  + P+ VT+ S  S 
Sbjct: 253 ------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSA 306

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  IH Y  K+    N+ + TA+ID YAK G +  A +VF    GR+ + W
Sbjct: 307 CSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTW 366

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAIIS  A HG+A  A++ F+EM++N + PD VTF  +LSAC H GLV++    F+ MS 
Sbjct: 367 TAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSS 426

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P ++HY+CMV +L RA  + EA E +  MP++  A VWGAL +   I G+V +G+
Sbjct: 427 KFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGE 486

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L +++P ++G Y+++AN+Y +A  W EA + R+ M++ G+ K PG S IE +G +
Sbjct: 487 RAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIV 546

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMRE 452
             F+ +D S  +SEQIY   E L+ L R+
Sbjct: 547 YEFIVRDKSHPQSEQIY---ECLIQLTRQ 572



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 174/370 (47%), Gaps = 49/370 (13%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +  SWN  I G+       E   L++ +L     +PD  T   + +AC + S I  G E+
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              V+      D+++ NA+I +   CG LD AR + D+   +D VS++++I+GY+  G+ 
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 161

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A++ +                               REM+  G++P+ VT+  + S  
Sbjct: 162 YEALNFY-------------------------------REMKVEGIKPDEVTMIGVVSSC 190

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L  G+E H Y  +N     + +A A++D Y K G L  A+++FD    ++++ WT
Sbjct: 191 AQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWT 250

Query: 245 ----------------AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
                           A+I  Y       +A++LFNEM    I PD VT  + LSAC+  
Sbjct: 251 TMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQL 310

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G +D    I + +  ++ +  +V     ++ + ++  +I++A +   ++P + S   W A
Sbjct: 311 GALDVGIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL-TWTA 368

Query: 349 LLYGASISGD 358
           ++ G ++ G+
Sbjct: 369 IISGLALHGN 378



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 135 KRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
           + P   +WN  I G + + N  EAV+   R +Q  G +P+  T   +F   +  S ++ G
Sbjct: 39  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 98

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
            EI G+ +   +D +I+V+ A+I      G L GA+++FD+   R L+ W ++I+ Y   
Sbjct: 99  SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR 158

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           G A +A++ + EM   GI+PD VT   V+S+CA 
Sbjct: 159 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQ 192



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 34/257 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V WN+MI GY      +E  ALF EM  +  + PD VT+VS L AC Q   +  
Sbjct: 257 MPDKDVVPWNAMIGGYVHANRGKEALALFNEM-QAMNINPDEVTMVSCLSACSQLGALDV 315

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H+++ +  + +++ +  ALI MYAKCG +  A  +  E+  ++ ++++AIISG  +
Sbjct: 316 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 375

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A+  F                                EM  + V P+ VT   +
Sbjct: 376 HGNAHGAIAYFS-------------------------------EMIDNSVMPDEVTFLGL 404

Query: 181 FSLFSHFSNLKGGKE-IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S   H   ++ G++     + K      +   + ++D   + G L  A+ +       +
Sbjct: 405 LSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA 464

Query: 240 -LIIWTAIISAYAAHGD 255
             ++W A+  A   HG+
Sbjct: 465 DAVVWGALFFACRIHGN 481


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 296/504 (58%), Gaps = 44/504 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL-FREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M ++D+V+WN +I+ Y Q   ++  KAL    ++ S  LR D VT+ S+L A   +S+I 
Sbjct: 344 MLEKDVVTWNLLISSYVQ--HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIK 401

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV---------- 109
            G E H + I  +++ D+ + N++I MYAKC  +D AR + D  +++D V          
Sbjct: 402 LGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYA 461

Query: 110 -------------------------SYSAIISGYMVHGFVEKAMDLFQVMK----RPGLS 140
                                    S++++I G++ +G V +A D+F  M+    +P L 
Sbjct: 462 QVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLI 521

Query: 141 TWNAVISGLVQNN-RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
           TW  +ISGL Q+   +EA+L   ++MQ +G+RP+  +I+S+    +   +L  G+ IHG+
Sbjct: 522 TWTTLISGLAQSGFGYEAIL-FFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGF 580

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
             ++ +  ++ VAT+++D YAK G +  A++VF     + L I+ A+ISAYA HG A +A
Sbjct: 581 ITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEA 640

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           ++LF  +   GI+PD +TFT++LSAC+H+GLV++  ++F  M  ++ + P +EHY C+V 
Sbjct: 641 LALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVS 700

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           +LSR   + EA   +  MP +P A + G+LL       ++ELG+++  HLF++EP N+GN
Sbjct: 701 LLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGN 760

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQI 439
           Y+ ++N Y+ AGRW E   +R+ MK  GL K PG SWI+  G L  FVA D S  K+E+I
Sbjct: 761 YVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEI 820

Query: 440 YLILERLLGLMREEGYVLLDEVEE 463
           Y +L  LL  MR  GYV +   EE
Sbjct: 821 YAMLAMLLSEMRFMGYVPIASNEE 844



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 209/422 (49%), Gaps = 57/422 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++V+WNSMI GY Q G  +E   +F +M    +  P  VTV S L A      ++ 
Sbjct: 243 MVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGI-EPTRVTVASFLSASANLDALIE 301

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H                              A A+L+ + D D +  S+II+ Y  
Sbjct: 302 GKQGH------------------------------AIAILNSL-DLDNILGSSIINFYSK 330

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  +F  M    + TWN +IS  VQ+++    L++   M++  +R ++VT+SSI
Sbjct: 331 VGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSI 390

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  SN+K GKE H Y ++   + ++ VA +IID YAK   +  A++VFD    R L
Sbjct: 391 LSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDL 450

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  +++AYA  G + +A+ LF +M  + + P+ +++ +V+     +G V++A D+F+ 
Sbjct: 451 VLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQ 510

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPS-AKVWGALL------ 350
           M    G QP++  +  ++  L+++    EA  F  KM    ++PS A +   LL      
Sbjct: 511 MQS-LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIP 569

Query: 351 ---YGASISGDVELGKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
              YG +I G      F+  H F +  P  T     + ++Y++ G  DEA +V   M   
Sbjct: 570 SLWYGRAIHG------FITRHEFCLSVPVATS----LVDMYAKCGSIDEAKKVFHMMSSK 619

Query: 407 GL 408
            L
Sbjct: 620 EL 621



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 196/408 (48%), Gaps = 39/408 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW +++    + GF E+    F EM  + V  PD   + +VL+ACG    I  G  
Sbjct: 145 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF-PDNFVLPNVLKACGSLQLIGLGKG 203

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V++      +++ ++L+ MY KCG L+ AR + D M +K+ V+++++I GY+ +G 
Sbjct: 204 VHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGL 263

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            ++A+D+F                                +M+  G+ P  VT++S  S 
Sbjct: 264 NQEAIDVFY-------------------------------DMRVEGIEPTRVTVASFLSA 292

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   L  GK+ H  A+ N  D +  + ++II+ Y+K G +  A+ VF R   + ++ W
Sbjct: 293 SANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTW 352

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +IS+Y  H    KA+++ + M +  ++ D VT +++LSA A +  + K     +    
Sbjct: 353 NLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNI-KLGKEGHCYCI 411

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG-ASISGDVELG 362
           +  ++  V     ++ + ++  RI +A + V     +    +W  LL   A +    E  
Sbjct: 412 RRNLESDVVVANSIIDMYAKCERIDDARK-VFDSTTERDLVLWNTLLAAYAQVGLSGEAL 470

Query: 363 KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           K      F+  P N  + N +I+  L  + G+ +EA  +  QM+  G 
Sbjct: 471 KLFYQMQFDSVPPNVISWNSVILGFL--RNGQVNEAKDMFSQMQSLGF 516



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 154/340 (45%), Gaps = 40/340 (11%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K+E   + ++  Y    F E A+ LF  ++   + +W A++    +    E  L    EM
Sbjct: 114 KNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEM 173

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q +GV P+   + ++         +  GK +HGY +K  +   ++V+++++D Y K G L
Sbjct: 174 QENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVL 233

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    ++++ W ++I  Y  +G   +A+ +F +M   GI+P  VT  + LSA 
Sbjct: 234 EDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSAS 293

Query: 286 AH-----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA---------------- 324
           A+      G    A  I N++     +  S+ ++   VG++  A                
Sbjct: 294 ANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWN 353

Query: 325 ---------RRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
                     ++ +A      M    ++  +    ++L  ++++ +++LGK    H + I
Sbjct: 354 LLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE--GHCYCI 411

Query: 373 EPENTGNYIIMAN----LYSQAGRWDEADRVREQMKESGL 408
              N  + +++AN    +Y++  R D+A +V +   E  L
Sbjct: 412 R-RNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDL 450


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 273/469 (58%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VS+N++IAGY+Q G YE+   + REM  +  L+PD  T+ SVL    +  D++ 
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKPDSFTLSSVLPIFSEYVDVIK 260

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +VI   I  D++I ++L+ MYAK   ++ +  +   +  +D +S          
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS---------- 310

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++G VQN R+   L L R+M  + V+P AV  SS+
Sbjct: 311 ---------------------WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSV 349

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY ++  +  NI++A+A++D Y+K G +  A+++FDR      
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE 409

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTAII  +A HG   +AVSLF EM   G++P+ V F AVL+AC+H GLVD+AW  FN+
Sbjct: 410 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 469

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG+   +EHYA +  +L RA ++ EA  F+SKM V+P+  VW  LL   S+  ++E
Sbjct: 470 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLE 529

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +F ++ EN G Y++M N+Y+  GRW E  ++R +M++ GL K P  SWIE  
Sbjct: 530 LAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                FV+ D S    ++I   L+ ++  M +EGYV     +L +V+EE
Sbjct: 590 NKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEE 638



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 188/359 (52%), Gaps = 12/359 (3%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +++W S+I  ++    + +  A F EM  S    PD     SVL++C    D+ FG  VH
Sbjct: 70  VLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 66  NFVIESHIKMDLWICNALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAIISG---YM 119
            F++   +  DL+  NAL+ MYAK    GS      + DEM  +   S    +      M
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G ++    +F+VM R  + ++N +I+G  Q+  +E  L +VREM  + ++P++ T+SS
Sbjct: 189 PFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +  +FS + ++  GKEIHGY ++   D ++Y+ ++++D YAK+  +  ++RVF R   R 
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            I W ++++ Y  +G  ++A+ LF +M+   ++P  V F++V+ ACAH   +     +  
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367

Query: 300 -AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             + G +G    +   + +V + S+   I  A +   +M V      W A++ G ++ G
Sbjct: 368 YVLRGGFGSNIFIA--SALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHG 423



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 129/332 (38%), Gaps = 72/332 (21%)

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S S +IS Y     + +A+ LF+ +K P +  W +VI      +     L    EM+A
Sbjct: 39  HTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRA 98

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGF-- 224
           SG  P+     S+    +   +L+ G+ +HG+ V+   D ++Y   A+++ YAK  G   
Sbjct: 99  SGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGS 158

Query: 225 ---------------------------------LHGAQRVFDRFKGRSLIIWTAIISAYA 251
                                            +   +RVF+    + ++ +  II+ YA
Sbjct: 159 KISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYA 218

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
             G    A+ +  EM    ++PD  T ++VL   +    V K  +I   +  + GI   V
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVI-RKGIDSDV 277

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
              + +V + +++ RI ++    S++  +     W +L+ G                   
Sbjct: 278 YIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS-WNSLVAG------------------- 317

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
                          Y Q GR++EA R+  QM
Sbjct: 318 ---------------YVQNGRYNEALRLFRQM 334


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 283/506 (55%), Gaps = 44/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ +++V +N MI  Y   G Y++   +F+ M N     PD  T   VL+AC  S ++  
Sbjct: 97  ITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQG-FYPDNYTYPCVLKACSVSGNLWV 155

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  V++  + M+L+I N L+ MY KC  LD AR +LDEM  +D VS++++++GY  
Sbjct: 156 GLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQ 215

Query: 121 HGFVEKAM-------------------------------------DLFQVMKRPGLSTWN 143
           +G    A+                                     D+F  +K   L +WN
Sbjct: 216 NGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWN 275

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I+  V N      +DL  +MQ  GV P+AV+ISS+       S    G+ IH Y  + 
Sbjct: 276 VMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERK 335

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  A+ID YAK G L  A+ VFD+   R ++ WT++ISAY   G    AV+LF
Sbjct: 336 KLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALF 395

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            +M ++G  PD + F +VL+AC+H+GLVD+    FN M+ +YGI P +EHY CMV +L R
Sbjct: 396 KKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGR 454

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A +I EA     +MP++P+ +VWG+LL    +   + +     DHLF++ PE +G Y+++
Sbjct: 455 AGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLL 514

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW + + VR  M   G+ KIPG S +E +  + +F+A D S  +S++IY  L
Sbjct: 515 SNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKAL 574

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
             L+G M+E GY+      L +VEEE
Sbjct: 575 GVLVGRMKELGYMPETDSALHDVEEE 600



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 158/365 (43%), Gaps = 75/365 (20%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           L+  YA CG   Y R + DE++DK+ V ++ +I  Y+ +G  + A+ +F+ M        
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMAN------ 130

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
                                     G  P+  T   +    S   NL  G +IHG  VK
Sbjct: 131 -------------------------QGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVK 165

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
              D N+Y+   ++  Y K  +L  A+RV D   GR ++ W ++++ YA +G  + A+ L
Sbjct: 166 LGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKL 225

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSG-------------LVDK---AWDIF------NA 300
             EM +  ++PD  T  ++L A  ++              L +K   +W++       NA
Sbjct: 226 CREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNA 285

Query: 301 MSGQ----------YGIQP---SVEHYACMVGVLSRA---RRISEATEFVSKMPVKPSAK 344
           M  +          +G++P   S+       G LS A   RRI    E+V +  ++P+  
Sbjct: 286 MPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIH---EYVERKKLRPNLL 342

Query: 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           +  AL+   +  G ++  + V D +      +  ++  M + Y  +G+  +A  + ++M+
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQMMF---RDVVSWTSMISAYGMSGQGKDAVALFKKMR 399

Query: 405 ESGLA 409
           +SG  
Sbjct: 400 DSGFT 404



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 206 DRNIY----VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           D+N++    +   ++  YA  G     + +FD    ++++ +  +I +Y  +G    A+ 
Sbjct: 64  DQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALL 123

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           +F  M N G  PD  T+  VL AC+ SG +     I  A+  + G+  ++     +V + 
Sbjct: 124 VFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVV-KLGLDMNLYIGNGLVSMY 182

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL--FEIEPE 375
            + + +  A   + +MP +     W +++ G + +G       +C  +   +++P+
Sbjct: 183 GKCKWLDAARRVLDEMPGRDMVS-WNSMVAGYAQNGRFNDALKLCREMEDLKLKPD 237


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/452 (38%), Positives = 264/452 (58%), Gaps = 32/452 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V  ++MI+GY   G  EE   +FR +L    ++P+ VT+ SVL  C   + +  G ++
Sbjct: 408 DVVIGSTMISGYVLNGMSEEALQMFRYLLEQ-CIKPNAVTIASVLPGCASMAALPLGQQI 466

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +V+ +  +   ++ +AL+ MYAKCG LD +  +  +MS KDEV               
Sbjct: 467 HGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEV--------------- 511

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                           TWN++IS   QN + +  LDL R+M   G++ N +TIS+  S  
Sbjct: 512 ----------------TWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    +  GKEIHG  +K     +I+  +A+ID YAK G L  A RVF+    ++ + W 
Sbjct: 556 ASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWN 615

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +IISAY AHG   ++VSL + M   G +PD VTF A++SACAH+GLV++   +F  M+ +
Sbjct: 616 SIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKK 675

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EH+ACMV + SR+ ++ +A +F++ MP KP A +WGALL+   +  +VEL   
Sbjct: 676 YLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADI 735

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               LF+++P N+G Y++M+N+ + AGRWD   +VR  MK++ + KIPG SW++ +    
Sbjct: 736 ASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSH 795

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            FVA D S  +SE IY  L+ LL  +REEGYV
Sbjct: 796 LFVASDKSHPESEDIYTSLKTLLQELREEGYV 827



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 156/286 (54%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D+V+WN MI+G  Q G + E   LF +M  S   RPD +T+VS+L A    + +  
Sbjct: 303 MPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGA-RPDSITLVSLLPALTDLNGLKQ 361

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH +++ + + MD+++ +AL+ +Y KC  +  A+ L D     D V  S +ISGY++
Sbjct: 362 GKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVL 421

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ +F                               R +    ++PNAVTI+S+
Sbjct: 422 NGMSEEALQMF-------------------------------RYLLEQCIKPNAVTIASV 450

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L  G++IHGY ++N Y+R  YV +A++D YAK G L  +  +F +   +  
Sbjct: 451 LPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDE 510

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + W ++IS+++ +G   +A+ LF +M   GI+ + +T +A LSACA
Sbjct: 511 VTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACA 556



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 145/286 (50%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD V WN M+ G  + G  +    LFR M  S    P+  T+   L  C   +D++ 
Sbjct: 202 IPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGC-EPNFATLACFLSVCATDADLLS 260

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++  ++ ++ + N L+ MYAKC  LD                          
Sbjct: 261 GAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLD-------------------------- 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A  LF++M +  L TWN +ISG VQN        L  +MQ SG RP+++T+ S+
Sbjct: 295 -----DAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSL 349

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + LK GKE+HGY V+N  + ++++ +A++D Y K   +  AQ ++D  +   +
Sbjct: 350 LPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDV 409

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +I + +IS Y  +G + +A+ +F  +L   I+P+ VT  +VL  CA
Sbjct: 410 VIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCA 455



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 42/259 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS++D V+WNSMI+ +SQ G  +E   LFR+M    + + + +T+ + L AC     I +
Sbjct: 505 MSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGI-KYNNITISAALSACASLPAIYY 563

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   I+  IK D++  +ALI MYAKCG+L+ A  + + M DK+EVS+++IIS Y  
Sbjct: 564 GKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGA 623

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V++++ L                                  MQ  G +P+ VT  ++
Sbjct: 624 HGLVKESVSLLH-------------------------------GMQEEGYKPDHVTFLAL 652

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA-QRVFDR 234
            S  +H   ++ G ++       Y +  R +        ++D Y+++G L  A Q + D 
Sbjct: 653 ISACAHAGLVEEGVQLFQCMTKKYLIAPRMEH----FACMVDLYSRSGKLDKAIQFIADM 708

Query: 235 FKGRSLIIWTAIISAYAAH 253
                  IW A++ A   H
Sbjct: 709 PFKPDAGIWGALLHACRVH 727



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 32/279 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVL-RPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + WN +I G++  G +      + +M + P    PD  T+  V+++C     +  G  VH
Sbjct: 105 LPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVH 164

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                  +  D+++ +AL+ MYA  G L  AR   D + ++D V                
Sbjct: 165 RTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCV---------------- 208

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                           WN ++ G ++    +  + L R M+ASG  PN  T++   S+ +
Sbjct: 209 ---------------LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCA 253

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             ++L  G ++H  AVK   +  + VA  ++  YAK   L  A R+F+      L+ W  
Sbjct: 254 TDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNG 313

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +IS    +G   +A  LF +M  +G +PD +T  ++L A
Sbjct: 314 MISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPA 352



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 128/279 (45%), Gaps = 16/279 (5%)

Query: 95  YARALLD-EMSDKDEVS-YSAIISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGL 149
           +ARA++   +SD + ++ ++ ++  Y++      A+ +F  + R   ++   WN +I G 
Sbjct: 55  HARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGF 114

Query: 150 VQNNRHE-AVLDLVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207
               +H  AVL  V+     +   P+A T+  +    +    +  G+ +H  A       
Sbjct: 115 TAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLAN 174

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           ++YV +A++  YA  G L  A+  FD    R  ++W  ++      GD   AV LF  M 
Sbjct: 175 DVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMR 234

Query: 268 NNGIQPDPVTFTAVLSACA-HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
            +G +P+  T    LS CA  + L+  A    ++++ + G++P V     ++ + ++ + 
Sbjct: 235 ASGCEPNFATLACFLSVCATDADLLSGAQ--LHSLAVKCGLEPEVAVANTLLAMYAKCQC 292

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           + +A      MP +     W  +     ISG V+ G FV
Sbjct: 293 LDDAWRLFELMP-QDDLVTWNGM-----ISGCVQNGLFV 325


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 271/469 (57%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN++IAG ++ G YEE   + REM     L+PD  T+ SVL    ++ DI  
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREM-GGANLKPDSFTLSSVLPLIAENVDISR 257

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   I   +  D+++ ++LI MYAKC  +  +  +   ++++D +S          
Sbjct: 258 GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGIS---------- 307

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G VQN   +  L   R+M  + ++P + + SSI
Sbjct: 308 ---------------------WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSI 346

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY  +N +D NI++A++++D YAK G +  A+++FDR + R +
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I   A HG A  A+ LF +M   GI+P+ V F AVL+AC+H GLVD+AW  FN+
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNS 466

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI P VEHYA +  +L RA R+ EA +F+  M + P+  +W  LL    +  +++
Sbjct: 467 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNID 526

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + + V + + E++P NTG YI++AN+YS A RW EA + R  M+  G+ K P  SWIE  
Sbjct: 527 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 586

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F+A D S    E+I   +E L+ LM +EGYV     +  +VEEE
Sbjct: 587 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEE 635



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 182/359 (50%), Gaps = 18/359 (5%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           ++W S+I  Y+  G   +    F  ML S  L PD     SVL++C    D+  G  +H 
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDY-------ARALLDEMSDKDE-VSYSAIISGY 118
           ++I   +  DL+  NAL+ MY+K   L+        A  + DEM+++   V   +++S  
Sbjct: 131 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSE- 189

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                 +    +F++M    L +WN +I+G  +N  +E  L ++REM  + ++P++ T+S
Sbjct: 190 ------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLS 243

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+  L +   ++  GKEIHG +++   D +IYVA+++ID YAK   +  + RVF     R
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             I W +II+    +G   + +  F +ML   I+P   +F++++ ACAH   +     + 
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             ++ + G   ++   + +V + ++   I  A +   +M ++     W A++ G ++ G
Sbjct: 364 GYIT-RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHG 420



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y+    LH + R+F+       + W ++I  Y +HG   +++  F  ML +G+ PD   F
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 279 TAVLSACA 286
            +VL +CA
Sbjct: 110 PSVLKSCA 117


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 282/526 (53%), Gaps = 71/526 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D+V+WN MI+G  Q G  +E   LF +ML S   RPD VT+VS+L A    + +  
Sbjct: 303 LPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGA-RPDSVTLVSLLPALTDLNGLKQ 361

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM- 119
           G EVH ++I + + MD ++ +AL+ +Y KC  +  AR L D     D V  S +ISGY+ 
Sbjct: 362 GKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVL 421

Query: 120 --------------------------------------------VHGFVEK--------- 126
                                                       +HG+V +         
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYV 481

Query: 127 ---AMDLFQVMKRPGLS-------------TWNAVISGLVQNNRHEAVLDLVREMQASGV 170
               MD++    R  LS             TWN++IS   QN   +  LDL R+M   G+
Sbjct: 482 ESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGI 541

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           + N VTISS  S  +    +  GKEIHG  +K     +I+  +A+ID YAK G +  A R
Sbjct: 542 KYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALR 601

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VF+    ++ + W +IISAY AHG   ++VS  + M   G +PD VTF A++SACAH+GL
Sbjct: 602 VFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGL 661

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V++   +F  M+ +Y I P +EH+ACMV + SR+ R+ +A +F++ MP KP A +WGALL
Sbjct: 662 VEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALL 721

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
           +   +  +VEL       LF+++P N+G Y++M+N+ + AGRWD   +VR  MK++ + K
Sbjct: 722 HACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILK 781

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           IPG SW++ +     FVA D S  +SE IY  L+ LL  +REEGYV
Sbjct: 782 IPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELREEGYV 827



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 177/365 (48%), Gaps = 44/365 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V WN M+ GY + G       LFR M  S    P+  T+   L  C   +D++ 
Sbjct: 202 MPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGC-EPNFATLACFLSVCAAEADLLS 260

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H+  ++  ++ ++ + N L+ MYAKC  LD                          
Sbjct: 261 GVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLD-------------------------- 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A  LF+++ R  L TWN +ISG VQN   +  L L  +M  SG RP++VT+ S+
Sbjct: 295 -----DAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSL 349

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + LK GKE+HGY ++N    + ++ +A++D Y K   +  A+ ++D  +   +
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV 409

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-- 298
           +I + +IS Y  +G + KA+ +F  +L   I+P+ VT  +VL ACA    +    +I   
Sbjct: 410 VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGY 469

Query: 299 ---NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
              NA  G+  ++ +      ++ + ++  R+  +    SKM +K     W +++   S 
Sbjct: 470 VLRNAYEGKCYVESA------LMDMYAKCGRLDLSHYIFSKMSLKDEV-TWNSMISSFSQ 522

Query: 356 SGDVE 360
           +G+ +
Sbjct: 523 NGEPQ 527



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 32/279 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVL-RPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + WN +I G++  G +      + +M   P    PD  T+  V+++C     +  G  VH
Sbjct: 105 LPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVH 164

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                + +  D+++ +ALI MY+  G L  AR   D M  +D V ++ ++ GY+  G V 
Sbjct: 165 RTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVG 224

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A+ LF                               R M+ SG  PN  T++   S+ +
Sbjct: 225 GAVRLF-------------------------------RNMRVSGCEPNFATLACFLSVCA 253

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             ++L  G ++H  AVK   ++ + VA  ++  YAK   L  A R+F+      L+ W  
Sbjct: 254 AEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNG 313

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +IS    +G   +A+ LF +ML +G +PD VT  ++L A
Sbjct: 314 MISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 12/284 (4%)

Query: 95  YARALLD-EMSDKDEVS-YSAIISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGL 149
           +ARA++   +S+ + ++ ++ ++  Y++      A+ +F  + R    +   WN +I G 
Sbjct: 55  HARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGF 114

Query: 150 VQNNRHE-AVLDLVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207
                H  AVL  V+     +   P+A T+  +    +    +  G+ +H  A       
Sbjct: 115 TAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLAS 174

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           ++YV +A+I  Y+  G L  A+  FD    R  ++W  ++  Y   GD   AV LF  M 
Sbjct: 175 DVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMR 234

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            +G +P+  T    LS CA    +     + ++++ + G++  V     ++ + ++ R +
Sbjct: 235 VSGCEPNFATLACFLSVCAAEADLLSGVQL-HSLAVKCGLEQEVAVANTLLSMYAKCRCL 293

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISG--DVELGKFVCDHL 369
            +A      +P +     W  ++ G   +G  D  LG F CD L
Sbjct: 294 DDAWRLFELLP-RDDLVTWNGMISGCVQNGLLDEALGLF-CDML 335


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 259/437 (59%), Gaps = 1/437 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWNS+I GY +     E   ++++M+   V +PD VT++ V+ AC Q   +  G E
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHV-KPDEVTMIGVVSACAQLESLKLGRE 276

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H ++ ES + + + + NAL+ MY KCG L+  + L D M  K  VS++ +I GY  +G 
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGL 336

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A  LF  M    +  WNA+I   VQ N     L+L REMQ S ++P+ VT+    S 
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSA 396

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G   H Y  K+    ++ + TA+ID YAK G +  A +VF+    R+ + W
Sbjct: 397 CSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTW 456

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAII   A +G+ + A+  F++M+++G+ PD +TF  VL+AC H GLV++    F+ M  
Sbjct: 457 TAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKS 516

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P  +HY+CMV +L RA  + EA E +  MP++  A VWGAL +   I  ++ +G+
Sbjct: 517 RFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGE 576

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L +++P ++G Y+++AN+Y +AG+W+EA  +R+ M E G+ K PG S IE +G +
Sbjct: 577 RAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGII 636

Query: 424 QSFVAKDTSGDKSEQIY 440
             F+ +D S  +SEQIY
Sbjct: 637 NEFIVRDKSHPQSEQIY 653



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 198/461 (42%), Gaps = 49/461 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +   ++ SWN++I G  +    ++   L++ ML     RPD  T   + + C        
Sbjct: 113 LQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYM 172

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+   V++     D+++ N +I M    G    A  + DE   +D VS++++I+GY+ 
Sbjct: 173 GFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVR 232

Query: 121 HGFVEKAMDLFQVM----KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                +AM ++Q M     +P   T   V+S   Q    +   ++ R ++ SG+      
Sbjct: 233 RRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISL 292

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ++++  ++    +L+ GK +      N   + +   T +I  YAK G L  A ++F    
Sbjct: 293 VNALMDMYVKCGDLEAGKVL----FDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMP 348

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++++ W A+I +      + +A+ LF EM  + ++PD VT    LSAC+  G +D    
Sbjct: 349 EKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMW 408

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
             N +  ++ +   V     ++ + ++   +++A +  ++MP + S   W A++ G ++ 
Sbjct: 409 THNYIK-KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSL-TWTAIIGGLALY 466

Query: 357 GDVELGKF----------------------VCDH----------------LFEIEPENTG 378
           G+V    F                       C H                 F + P+   
Sbjct: 467 GNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQ-PK 525

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +Y  M NL  +AG  +EA+ + + M     A + G  +  C
Sbjct: 526 HYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFAC 566



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 27/226 (11%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF--------------- 123
           + N L+ +   C S    + +  +M          I++G ++ GF               
Sbjct: 52  LSNPLLSLLENCKSFSQLKQIQAQM----------ILTGLILDGFASSRLISFCAISESR 101

Query: 124 -VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIF 181
            ++  + +   ++ P + +WNAVI G V++   +  L L + M   +G RP+  T S +F
Sbjct: 102 NLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLF 161

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            + ++      G EI G  +K  +D+++Y+   II      G    A +VFD    R L+
Sbjct: 162 KVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLV 221

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            W ++I+ Y       +A+ ++ +M+   ++PD VT   V+SACA 
Sbjct: 222 SWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQ 267


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 296/504 (58%), Gaps = 44/504 (8%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKAL-FREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
            M ++D+V+WN +I+ Y Q   ++  KAL    ++ S  LR D VT+ S+L A   +S+I 
Sbjct: 1439 MLEKDVVTWNLLISSYVQ--HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIK 1496

Query: 60   FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV---------- 109
             G E H + I  +++ D+ + N++I MYAKC  +D AR + D  +++D V          
Sbjct: 1497 LGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYA 1556

Query: 110  -------------------------SYSAIISGYMVHGFVEKAMDLFQVMK----RPGLS 140
                                     S++++I G++ +G V +A D+F  M+    +P L 
Sbjct: 1557 QVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLI 1616

Query: 141  TWNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            TW  +ISGL Q+   +EA+L   ++MQ +G+RP+  +I+S+    +   +L  G+ IHG+
Sbjct: 1617 TWTTLISGLAQSGFGYEAIL-FFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGF 1675

Query: 200  AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
              ++ +  ++ VAT+++D YAK G +  A++VF     + L I+ A+ISAYA HG A +A
Sbjct: 1676 ITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEA 1735

Query: 260  VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
            ++LF  +   GI+PD +TFT++LSAC+H+GLV++  ++F  M  ++ + P +EHY C+V 
Sbjct: 1736 LALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVS 1795

Query: 320  VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
            +LSR   + EA   +  MP +P A + G+LL       ++ELG+++  HLF++EP N+GN
Sbjct: 1796 LLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGN 1855

Query: 380  YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQI 439
            Y+ ++N Y+ AGRW E   +R+ MK  GL K PG SWI+  G L  FVA D S  K+E+I
Sbjct: 1856 YVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEI 1915

Query: 440  YLILERLLGLMREEGYVLLDEVEE 463
            Y +L  LL  MR  GYV +   EE
Sbjct: 1916 YAMLAMLLSEMRFMGYVPIASNEE 1939



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 209/422 (49%), Gaps = 57/422 (13%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M ++++V+WNSMI GY Q G  +E   +F +M    +  P  VTV S L A      ++ 
Sbjct: 1338 MVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGI-EPTRVTVASFLSASANLDALIE 1396

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G + H                              A A+L+ + D D +  S+II+ Y  
Sbjct: 1397 GKQGH------------------------------AIAILNSL-DLDNILGSSIINFYSK 1425

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             G +E A  +F  M    + TWN +IS  VQ+++    L++   M++  +R ++VT+SSI
Sbjct: 1426 VGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSI 1485

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             S  +  SN+K GKE H Y ++   + ++ VA +IID YAK   +  A++VFD    R L
Sbjct: 1486 LSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDL 1545

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            ++W  +++AYA  G + +A+ LF +M  + + P+ +++ +V+     +G V++A D+F+ 
Sbjct: 1546 VLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQ 1605

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPS-AKVWGALL------ 350
            M    G QP++  +  ++  L+++    EA  F  KM    ++PS A +   LL      
Sbjct: 1606 MQS-LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIP 1664

Query: 351  ---YGASISGDVELGKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
               YG +I G      F+  H F +  P  T     + ++Y++ G  DEA +V   M   
Sbjct: 1665 SLWYGRAIHG------FITRHEFCLSVPVATS----LVDMYAKCGSIDEAKKVFHMMSSK 1714

Query: 407  GL 408
             L
Sbjct: 1715 EL 1716



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 196/408 (48%), Gaps = 39/408 (9%)

Query: 4    RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
            R++ SW +++    + GF E+    F EM  + V  PD   + +VL+ACG    I  G  
Sbjct: 1240 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF-PDNFVLPNVLKACGSLQLIGLGKG 1298

Query: 64   VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            VH +V++      +++ ++L+ MY KCG L+ AR + D M +K+ V+++++I GY+ +G 
Sbjct: 1299 VHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGL 1358

Query: 124  VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             ++A+D+F                                +M+  G+ P  VT++S  S 
Sbjct: 1359 NQEAIDVFY-------------------------------DMRVEGIEPTRVTVASFLSA 1387

Query: 184  FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
             ++   L  GK+ H  A+ N  D +  + ++II+ Y+K G +  A+ VF R   + ++ W
Sbjct: 1388 SANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTW 1447

Query: 244  TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
              +IS+Y  H    KA+++ + M +  ++ D VT +++LSA A +  + K     +    
Sbjct: 1448 NLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNI-KLGKEGHCYCI 1506

Query: 304  QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG-ASISGDVELG 362
            +  ++  V     ++ + ++  RI +A + V     +    +W  LL   A +    E  
Sbjct: 1507 RRNLESDVVVANSIIDMYAKCERIDDARK-VFDSTTERDLVLWNTLLAAYAQVGLSGEAL 1565

Query: 363  KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            K      F+  P N  + N +I+  L  + G+ +EA  +  QM+  G 
Sbjct: 1566 KLFYQMQFDSVPPNVISWNSVILGFL--RNGQVNEAKDMFSQMQSLGF 1611



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 106  KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
            K+E   + ++  Y    F E A+ LF  ++   + +W A++    +    E  L    EM
Sbjct: 1209 KNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEM 1268

Query: 166  QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
            Q +GV P+   + ++         +  GK +HGY +K  +   ++V+++++D Y K G L
Sbjct: 1269 QENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVL 1328

Query: 226  HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
              A++VFD    ++++ W ++I  Y  +G   +A+ +F +M   GI+P  VT  + LSA 
Sbjct: 1329 EDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSAS 1388

Query: 286  AH-----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            A+      G    A  I N++     +  S+ ++   VG++  A  +
Sbjct: 1389 ANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELV 1435


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 283/506 (55%), Gaps = 43/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R++V +N MI  Y     Y++   +FREM+N    RPD  T   VL+AC  S ++ +
Sbjct: 79  MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGG-FRPDNYTYPCVLKACSCSENLRY 137

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H  V++  +  +L++ N LI MY KCG L  AR + DEM  KD VS++++++GY  
Sbjct: 138 GLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAH 197

Query: 121 HGFVEKAMDL-------------------------------------FQVMKRPGLSTWN 143
           +   + A+++                                     F  ++R  L +WN
Sbjct: 198 NMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWN 257

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I   ++N+     +DL  +M+   V P+A+T +S+       S L  G+ IH Y  K 
Sbjct: 258 VMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKK 317

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  ++ID YA+ G L  A+RVFDR K R +  WT++ISAY   G    AV+LF
Sbjct: 318 KLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALF 377

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            EMLN+G  PD + F A+LSAC+HSGL+D+    F  M+  Y I P +EHYAC+V +L R
Sbjct: 378 TEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGR 437

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A R+ EA   + +MP++P+ +VW  LL    +  ++++G    D+L ++ PE +G Y+++
Sbjct: 438 AGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLL 497

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW E   +R  MK   + K PG S +E +  + +F+A DTS  +S++IY  L
Sbjct: 498 SNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEEL 557

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
             L+  M+E GYV      L +VEEE
Sbjct: 558 GVLVAKMKELGYVPETDSALHDVEEE 583



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 155/370 (41%), Gaps = 60/370 (16%)

Query: 50  QACGQSSDIVFGMEVHN--FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +A  Q+ DI    ++H   F + SH    L I   L+  YA CG     R + DEMSD++
Sbjct: 26  KALDQNPDIKTLKKLHTMIFYLNSHQNPSLGI--KLMRSYAACGEPGLTRKVFDEMSDRN 83

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            V Y+ +I  Y                               V N+R++  L + REM  
Sbjct: 84  VVFYNVMIRSY-------------------------------VNNHRYDDGLLVFREMVN 112

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            G RP+  T   +    S   NL+ G  IHG  +K   D N++V   +I  Y K G L  
Sbjct: 113 GGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFE 172

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+RVFD    + ++ W ++++ YA +     A+ +  EM + G +PD  T  +++ A A+
Sbjct: 173 ARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVAN 232

Query: 288 S-------------GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
           +              L  K    +N M   Y           +   + + R   +A  F 
Sbjct: 233 TSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFA 292

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
           S   V P+     ALL G  I   VE  K   + L E       N +I  ++Y++ G  D
Sbjct: 293 S---VLPACGDLSALLLGRRIHEYVEKKKLCPNLLLE-------NSLI--DMYARCGCLD 340

Query: 395 EADRVREQMK 404
           +A RV ++MK
Sbjct: 341 DAKRVFDRMK 350


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 272/474 (57%), Gaps = 39/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R +VS+ SMIAGY++ G   E   LF EM    +  PD  TV +VL  C +   +  
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYRLLDE 415

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++ E+ +  D+++ NAL+ MYAKCGS+  A  +  EM  KD +S++ II GY  
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + +  +A+ LF ++                              ++     P+  T++ +
Sbjct: 476 NCYANEALSLFNLL------------------------------LEEKRFSPDERTVACV 505

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S    G+EIHGY ++N Y  + +VA +++D YAK G L  A  +FD    + L
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDL 565

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I+ Y  HG   +A++LFN+M   GI+ D ++F ++L AC+HSGLVD+ W  FN 
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 625

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +  I+P+VEHYAC+V +L+R   + +A  F+  MP+ P A +WGALL G  I  DV+
Sbjct: 626 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 685

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +FE+EPENTG Y++MAN+Y++A +W++  R+R+++ + GL K PG SWIE  
Sbjct: 686 LAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 745

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL--------DEVEEESA 466
           G +  FVA D+S  ++E I   L ++   M EEGY  L        +E+E+E A
Sbjct: 746 GRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEA 799



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 155/298 (52%), Gaps = 33/298 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD++SWNS+I GY   G  E+  ++F +ML S +   D  T+VSV   C  S  I  
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISL 314

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  +++    +   CN L+ MY+KCG LD A+A+  EMSD+  VSY+++I+GY  
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+ LF+                               EM+  G+ P+  T++++
Sbjct: 375 EGLAGEAVKLFE-------------------------------EMEEEGISPDVYTVTAV 403

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  + +  L  GK +H +  +N    +I+V+ A++D YAK G +  A+ VF   + + +
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDI 297
           I W  II  Y+ +  A++A+SLFN +L      PD  T   VL ACA     DK  +I
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 32/285 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN ++   ++ G +     LF++M++S V   D  T   V ++      +  G ++H F+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 221

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++S       + N+L+  Y K   +D AR + DEM+++D +S+++II+GY+ +G  EK +
Sbjct: 222 LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGL 281

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F                                +M  SG+  +  TI S+F+  +   
Sbjct: 282 SVFV-------------------------------QMLVSGIEIDLATIVSVFAGCADSR 310

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            +  G+ +H   VK  + R       ++D Y+K G L  A+ VF     RS++ +T++I+
Sbjct: 311 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 370

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            YA  G A +AV LF EM   GI PD  T TAVL+ CA   L+D+
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 135/288 (46%), Gaps = 34/288 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R +   N+ +  + + G  E    L   +  S     D  T+ SVLQ C  S  +  G E
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKL---LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V NF+  +   +D  + + L  MY  CG L  A  + DE+                    
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK------------------- 156

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +EKA+             WN +++ L ++      + L ++M +SGV  ++ T S +   
Sbjct: 157 IEKAL------------FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKS 204

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           FS   ++ GG+++HG+ +K+ +     V  +++  Y K   +  A++VFD    R +I W
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISW 264

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
            +II+ Y ++G A K +S+F +ML +GI+ D  T  +V + CA S L+
Sbjct: 265 NSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 312


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 272/474 (57%), Gaps = 39/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R +VS+ SMIAGY++ G   E   LF EM    +  PD  TV +VL  C +   +  
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYRLLDE 264

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++ E+ +  D+++ NAL+ MYAKCGS+  A  +  EM  KD +S++ II GY  
Sbjct: 265 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 324

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + +  +A+ LF ++                              ++     P+  T++ +
Sbjct: 325 NCYANEALSLFNLL------------------------------LEEKRFSPDERTVACV 354

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S    G+EIHGY ++N Y  + +VA +++D YAK G L  A  +FD    + L
Sbjct: 355 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDL 414

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I+ Y  HG   +A++LFN+M   GI+ D ++F ++L AC+HSGLVD+ W  FN 
Sbjct: 415 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 474

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +  I+P+VEHYAC+V +L+R   + +A  F+  MP+ P A +WGALL G  I  DV+
Sbjct: 475 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 534

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +FE+EPENTG Y++MAN+Y++A +W++  R+R+++ + GL K PG SWIE  
Sbjct: 535 LAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 594

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL--------DEVEEESA 466
           G +  FVA D+S  ++E I   L ++   M EEGY  L        +E+E+E A
Sbjct: 595 GRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEA 648



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 155/298 (52%), Gaps = 33/298 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD++SWNS+I GY   G  E+  ++F +ML S +   D  T+VSV   C  S  I  
Sbjct: 105 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISL 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  +++    +   CN L+ MY+KCG LD A+A+  EMSD+  VSY+++I+GY  
Sbjct: 164 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 223

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+ LF+                               EM+  G+ P+  T++++
Sbjct: 224 EGLAGEAVKLFE-------------------------------EMEEEGISPDVYTVTAV 252

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  + +  L  GK +H +  +N    +I+V+ A++D YAK G +  A+ VF   + + +
Sbjct: 253 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 312

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDI 297
           I W  II  Y+ +  A++A+SLFN +L      PD  T   VL ACA     DK  +I
Sbjct: 313 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 370



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 32/285 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN ++   ++ G +     LF++M++S V   D  T   V ++      +  G ++H F+
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 70

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++S       + N+L+  Y K   +D AR + DEM+++D +S+++II+GY+ +G  EK +
Sbjct: 71  LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGL 130

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F                                +M  SG+  +  TI S+F+  +   
Sbjct: 131 SVFV-------------------------------QMLVSGIEIDLATIVSVFAGCADSR 159

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            +  G+ +H   VK  + R       ++D Y+K G L  A+ VF     RS++ +T++I+
Sbjct: 160 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 219

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            YA  G A +AV LF EM   GI PD  T TAVL+ CA   L+D+
Sbjct: 220 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 264



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
           FD  K    + W  +++  A  GD S ++ LF +M+++G++ D  TF+ V
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 50


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  340 bits (872), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 275/458 (60%), Gaps = 4/458 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M++R+  SWNSMI GY Q G  +E   LF++M LN   ++PD  ++ S+L +C   SD  
Sbjct: 540 MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVSLSDSQ 597

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G E+HNF++ + ++ +  +   L+ MYAKCGS+DYA  + D+   KD +  + ++S ++
Sbjct: 598 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFV 657

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G    A +LF  M++   + WN++++G       +   +   EM  S +  + +T+ +
Sbjct: 658 NSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 717

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           I +L S    L+ G ++H   +K  + + ++ + TA++D Y+K G +  A+ VFD   G+
Sbjct: 718 IVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGK 777

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +++ W A+IS Y+ HG + +A+ L+ EM   G+ P+ VTF A+LSAC+H+GLV++   IF
Sbjct: 778 NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIF 837

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   Y I+   EHY CMV +L RA R+ +A EFV KMP++P    WGALL    +  D
Sbjct: 838 TSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKD 897

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +++G+     LFE++P+N G Y+IM+N+Y+ AGRW E + +R+ MK  G+ K PG SWIE
Sbjct: 898 MDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIE 957

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  +Q F A   +  K+E+IY  L  L    +  GY+
Sbjct: 958 INSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYI 995



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 201/413 (48%), Gaps = 41/413 (9%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +V+WN++IAGY +   +EE   +F  ML   V  PD  T  S L+ CG       G +VH
Sbjct: 241 VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC-PDNFTFASALRVCGALRSRDGGKQVH 299

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           + +I    K D ++ NALI MYAKC   +    + DEM ++++V                
Sbjct: 300 SKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQV---------------- 343

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                          TWN++IS   Q       L L   MQ SG + N   + SI    +
Sbjct: 344 ---------------TWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             +++  G+E+HG+ V+N  + +I + +A++D Y+K G +  A +VF     R+ + + A
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNA 448

Query: 246 IISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +++ Y   G A +A+ L+++M + +GIQPD  TFT +L+ CA+    ++   I +A   +
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI-HAHLIR 507

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LG 362
             I  ++     +V + S   R++ A E  ++M  + +A  W +++ G   +G+ +  L 
Sbjct: 508 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEGYQQNGETQEALR 566

Query: 363 KFVCDHLFEIEPENTGNYIIMANLY----SQAGRWDEADRVREQMKESGLAKI 411
            F    L  I+P+      ++++      SQ GR      VR  M+E G+ ++
Sbjct: 567 LFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 619



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 214/474 (45%), Gaps = 110/474 (23%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+ VS+N+++AGY Q G  EE   L+ +M +   ++PD  T  ++L  C    +   G 
Sbjct: 440 ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGR 499

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +I ++I  ++ +   L+ MY++CG L+YA+ + + M++++  S++++I GY  +G
Sbjct: 500 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             ++A+ LF                               ++MQ +G++P+  ++SS+ S
Sbjct: 560 ETQEALRLF-------------------------------KQMQLNGIKPDCFSLSSMLS 588

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL----------------- 225
                S+ + G+E+H + V+N  +    +   ++D YAK G +                 
Sbjct: 589 SCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVIL 648

Query: 226 --------------HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
                         + A+ +FD+ + R+  +W +I++ YA  G   ++ + F EML + I
Sbjct: 649 NNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDI 708

Query: 272 QPDPVTFTAVLSACA-----------HS-------------------------GLVDKAW 295
           + D +T   +++ C+           HS                         G + KA 
Sbjct: 709 EYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKAR 768

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALLYG 352
            +F+ M+G+     ++  +  M+   S+     EA     +MP K   P+   + A+L  
Sbjct: 769 TVFDNMNGK-----NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSA 823

Query: 353 ASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            S +G VE G  +   +   + IE +   +Y  M +L  +AGR ++A    E+M
Sbjct: 824 CSHTGLVEEGLRIFTSMQEDYNIEAK-AEHYTCMVDLLGRAGRLEDAKEFVEKM 876



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 185/447 (41%), Gaps = 81/447 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ +WN+MI  Y++   Y E   L+  M  S     D  T  SV++AC    D+  
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNF-SDKFTFPSVIKACIAMEDMGG 193

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++ + V+++ +  +L++  AL+  YA+ G +D      D ++  DE+  ++++     
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMD------DAVTSLDEIEGTSVV----- 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNAVI+G V+    E    +   M   GV P+  T +S 
Sbjct: 243 --------------------TWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASA 282

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +     +  GGK++H   +   +  + +V  A+ID YAK        +VFD    R+ 
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ 342

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-------------- 286
           + W +IISA A  G  + A+ LF  M  +G + +     ++L A A              
Sbjct: 343 VTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGH 402

Query: 287 ---------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                                  G+V++A  +F ++      +  V + A + G +    
Sbjct: 403 LVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLE----RNEVSYNALLAGYVQEG- 457

Query: 326 RISEATEFVSKMP----VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
           +  EA E    M     ++P    +  LL   +   +   G+ +  HL  I    T N I
Sbjct: 458 KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL--IRANITKNII 515

Query: 382 I---MANLYSQAGRWDEADRVREQMKE 405
           +   + ++YS+ GR + A  +  +M E
Sbjct: 516 VETELVHMYSECGRLNYAKEIFNRMAE 542



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 34/243 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD---YARALLDEM 103
           S++Q C  S+    G  +H  +I +    D ++   ++ +YA+ G LD   YAR L +EM
Sbjct: 76  SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEM 135

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            +++                               L+ WN +I    + + +  VL L  
Sbjct: 136 PERN-------------------------------LTAWNTMILAYARVDDYMEVLRLYG 164

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            M+ SG   +  T  S+        ++ G +++    VK   + N++V  A++D YA+ G
Sbjct: 165 RMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFG 224

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           ++  A    D  +G S++ W A+I+ Y       +A  +F+ ML  G+ PD  TF + L 
Sbjct: 225 WMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALR 284

Query: 284 ACA 286
            C 
Sbjct: 285 VCG 287



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           AS V P  +  SS+       ++ + GK IH   + N Y+ + Y+ T I+  YA++G L 
Sbjct: 66  ASDVNP--LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 227 G---AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               A+++F+    R+L  W  +I AYA   D  + + L+  M  +G   D  TF +V+ 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183

Query: 284 AC 285
           AC
Sbjct: 184 AC 185


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  340 bits (872), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 176/476 (36%), Positives = 276/476 (57%), Gaps = 11/476 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++V+WNS+ + Y   GF ++   +FREM+ + V +PD VT++S+L AC    D+  
Sbjct: 404 MPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGV-KPDLVTMLSILHACSDLQDLKS 462

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F +   +  D+++CNAL+ +YAKC  +  A+ + D +  ++  S++ I++ Y  
Sbjct: 463 GKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFT 522

Query: 121 HGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           +   EK + +F  M R  +     TW+ VI G V+N+R E  +++ R+MQ  G +P+  T
Sbjct: 523 NKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETT 582

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I SI    S    L+ GKEIH Y  ++  D ++    A++D YAK G L  ++ VFD   
Sbjct: 583 IYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMP 642

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + +  W  +I A   HG+  +A+SLF +ML + ++PD  TFT VLSAC+HS LV++   
Sbjct: 643 IKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQ 702

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IFN+MS  + ++P  EHY C+V + SRA  + EA  F+ +MP++P+A  W A L G  + 
Sbjct: 703 IFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVY 762

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VEL K     LFEI+P  + NY+ + N+   A  W EA ++R+ MKE G+ K PG SW
Sbjct: 763 KNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSW 822

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESA 466
                 + +FVA D S  +S++IY  L+ L   ++  G      YVL D  +EE A
Sbjct: 823 FHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKA 878



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 184/366 (50%), Gaps = 36/366 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+WNS+ + Y   GF ++   +FREM+   V +PD VTV  +L AC    D+  
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGV-KPDPVTVSCILSACSDLQDLKS 260

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F ++  +  ++++ NAL+ +Y  C  +  A+A+ D M  ++ +           
Sbjct: 261 GKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVI----------- 309

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN++ S  V     +  L++ REM  +GV+P+ + +SSI
Sbjct: 310 --------------------TWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSI 349

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S   +LK GK IHG+AVK+    +++V TA+++ YA    +  AQ VFD    R++
Sbjct: 350 LPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNV 409

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFN 299
           + W ++ S Y   G   K +++F EM+ NG++PD VT  ++L AC  S L D K+  + +
Sbjct: 410 VTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC--SDLQDLKSGKVIH 467

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             + ++G+   V     ++ + ++   + EA      +P +  A  W  +L     + + 
Sbjct: 468 GFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVAS-WNGILTAYFTNKEY 526

Query: 360 ELGKFV 365
           E G ++
Sbjct: 527 EKGLYM 532



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 174/348 (50%), Gaps = 38/348 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           RD+V+WNS+ A Y   GF ++   +FR+M LN   ++ + +TV S+L  C    D+  G 
Sbjct: 104 RDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNK--VKANPLTVSSILPGCSDLQDLKSGK 161

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H FV+   +  D+++ +A +  YAKC  +  A+ + D M  +D V             
Sbjct: 162 EIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVV------------- 208

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             TWN++ S  V     +  L++ REM   GV+P+ VT+S I S
Sbjct: 209 ------------------TWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILS 250

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S   +LK GK IHG+A+K+    N++V+ A+++ Y     +  AQ VFD    R++I 
Sbjct: 251 ACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVIT 310

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAM 301
           W ++ S Y   G   K +++F EM  NG++PDP+  +++L AC  S L D K+    +  
Sbjct: 311 WNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPAC--SQLKDLKSGKTIHGF 368

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           + ++G+   V     +V + +    + EA      MP + +   W +L
Sbjct: 369 AVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR-NVVTWNSL 415



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 159/310 (51%), Gaps = 35/310 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R++++WNS+ + Y   GF ++   +FREM LN   ++PD + + S+L AC Q  D+ 
Sbjct: 303 MPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG--VKPDPMAMSSILPACSQLKDLK 360

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H F ++  +  D+++C AL+ +YA C                             
Sbjct: 361 SGKTIHGFAVKHGMVEDVFVCTALVNLYANCLC--------------------------- 393

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V +A  +F +M    + TWN++ S  V     +  L++ REM  +GV+P+ VT+ S
Sbjct: 394 ----VREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLS 449

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I    S   +LK GK IHG+AV++    +++V  A++  YAK   +  AQ VFD    R 
Sbjct: 450 ILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHRE 509

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +  W  I++AY  + +  K + +F++M  + ++ D +T++ V+  C  +  +++A +IF 
Sbjct: 510 VASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFR 569

Query: 300 AMSGQYGIQP 309
            M    G +P
Sbjct: 570 KMQ-TMGFKP 578



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 156/313 (49%), Gaps = 35/313 (11%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           ++PD    ++V +AC  S D +   + H+      +  D+ I NA I  Y KC  ++ AR
Sbjct: 36  IKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGAR 95

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + D++  +D V+++++ + Y+  GF ++ +++F                          
Sbjct: 96  RVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVF-------------------------- 129

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
                R+M  + V+ N +T+SSI    S   +LK GKEIHG+ V++    +++V++A ++
Sbjct: 130 -----RKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVN 184

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YAK   +  AQ VFD    R ++ W ++ S Y   G   K +++F EM+ +G++PDPVT
Sbjct: 185 FYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVT 244

Query: 278 FTAVLSACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
            + +LSAC  S L D K+    +  + ++G+  +V     +V +      + EA      
Sbjct: 245 VSCILSAC--SDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDL 302

Query: 337 MPVKPSAKVWGAL 349
           MP + +   W +L
Sbjct: 303 MPHR-NVITWNSL 314



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 4/185 (2%)

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           +A G++P+     ++    +   +    K+ H  A +     ++ +  A I  Y K   +
Sbjct: 32  RARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCV 91

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            GA+RVFD    R ++ W ++ + Y   G   + +++F +M  N ++ +P+T +++L  C
Sbjct: 92  EGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGC 151

Query: 286 AHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
             S L D K+    +    ++G+   V   +  V   ++   + EA      MP +    
Sbjct: 152 --SDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHR-DVV 208

Query: 345 VWGAL 349
            W +L
Sbjct: 209 TWNSL 213


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 277/469 (59%), Gaps = 7/469 (1%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+++WN +I+ Y++ G +EE + LF  M +  VL P  VT+V VL AC +  D+  G 
Sbjct: 181 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL-PTTVTLVLVLSACSKLKDLRTGK 239

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH++V    ++ +L + NA+I MYA CG +D A  +   M+++D +S++ I+SG+   G
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A + F  M      +W A+I G +++NR +  L+L R MQA+ V+P+  T+ S+ +
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H   L+ G+ I  Y  +N+   +++V  A+ID Y K G +  A+ +F     R    
Sbjct: 360 ACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT 419

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I   A +G   KA+ +F+ ML   I PD +T+  VLSAC H+GLVDK    F  M+
Sbjct: 420 WTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMT 479

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            Q+GI+P++ HY C+V +L+RA R+ EA E +  MP+K ++ VWGALL G  +  + ++ 
Sbjct: 480 SQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 539

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + V   + E+EP+N   Y+++ N+Y+   RW++   +R+ M + G+ K PG S IE +G 
Sbjct: 540 EMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGR 599

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEES 465
           +  FVA D S  +++ I   L+++   ++  GY      V LD  EE+ 
Sbjct: 600 VHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDK 648



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 188/473 (39%), Gaps = 114/473 (24%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN+MI GYS+  F +   +L+ EML   V +PD  T   + +   +   + +G ++
Sbjct: 82  NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV-KPDRYTFPFLFKGFTRDIALEYGRQL 140

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++  ++ ++++  AL+ MY  CG LD AR + D     D ++++ IIS Y   G  
Sbjct: 141 HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKF 200

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E++  LF V                               M+   V P  VT+  + S  
Sbjct: 201 EESRRLFLV-------------------------------MEDKQVLPTTVTLVLVLSAC 229

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S   +L+ GK++H Y    + + N+ +  A+ID YA  G +  A  +F     R +I WT
Sbjct: 230 SKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 289

Query: 245 AIISAYAAHGDA-------------------------------SKAVSLFNEMLNNGIQP 273
            I+S +   G+                                 +A+ LF  M    ++P
Sbjct: 290 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 349

Query: 274 DPVTFTAVLSACAH-----------------------------------SGLVDKAWDIF 298
           D  T  +VL+ACAH                                    G VDKA  IF
Sbjct: 350 DEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIF 409

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASI 355
             MS     Q     +  M+  L+      +A +  S M    + P    +  +L   + 
Sbjct: 410 REMS-----QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 464

Query: 356 SGDVELG-----KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           +G V+ G     +    H   IEP N  +Y  + +L ++AGR  EA  V E M
Sbjct: 465 TGLVDKGRKYFLRMTSQH--GIEP-NIAHYGCLVDLLARAGRLKEAYEVIENM 514



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D VSW +MI GY +   ++E   LFR M  + V +PD  T+VSVL AC     +  
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV-KPDEFTMVSVLTACAHLGALEL 369

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++  + IK DL++ NALI MY KCG +D A ++  EMS +D+ +++A+I G  V
Sbjct: 370 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 429

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD-----LVREMQASGVRPNAV 175
           +G  EKA+D+F  M +  +        G++    H  ++D      +R     G+ PN  
Sbjct: 430 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIA 489

Query: 176 TISSIFSLFSHFSNLKGGKEI 196
               +  L +    LK   E+
Sbjct: 490 HYGCLVDLLARAGRLKEAYEV 510



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 160/399 (40%), Gaps = 77/399 (19%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVH--GFVEKAMDLFQVM 134
           + LI +   C S+D  + +  +   K    + V  + +++    H  G  + A  LF  +
Sbjct: 19  HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEI 78

Query: 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK 194
             P L  WN +I G  + +  +  + L  EM   GV+P+  T   +F  F+    L+ G+
Sbjct: 79  PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 138

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           ++HG+ +K+    N++V TA++  Y   G L  A+ VFD      +I W  IISAY   G
Sbjct: 139 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 198

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSAC----------------------------- 285
              ++  LF  M +  + P  VT   VLSAC                             
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 258

Query: 286 ------AHSGLVDKAWDIFNAMSGQ------------------------YGIQPSVEH-- 313
                 A  G +D A  IF +M+ +                        +   P  ++  
Sbjct: 259 AMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVS 318

Query: 314 YACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
           +  M+    R+ R  EA E    M    VKP      ++L   +  G +ELG+++  +  
Sbjct: 319 WTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY-- 376

Query: 371 EIEPENTGNYIIMAN----LYSQAGRWDEADRVREQMKE 405
            I+     N + + N    +Y + G  D+A+ +  +M +
Sbjct: 377 -IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 414


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 277/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSWN+MIAGY+Q G   +   LF  ML+   + PD  T+ SVL AC    ++  
Sbjct: 256 MPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
           G +VH +++ + +  +  + NALI  YAK GS++ AR ++D+   +D + +S++A++ GY
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G +E A ++F VM    +  W A+I G  QN R++  +DL R M   G  PN+ T++
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S+ +  + L  GK+IH  A+++  +R+  V+ AII  YA++G    A+R+FD+   R
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              I WT++I A A HG   +AV LF EML  G++PD +T+  VLSAC+H+G V++    
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRY 555

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ +  ++ I P + HYACMV +L+RA   SEA EF+ +MPV+P A  WG+LL    +  
Sbjct: 556 YDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHK 615

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + EL +   + L  I+P N+G Y  +AN+YS  GRW +A R+ +  KE  + K  G SW 
Sbjct: 616 NAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWT 675

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                +  F A D    + + +Y +  R+   ++  G+V     +L +V++E
Sbjct: 676 HIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDE 727



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 209/474 (44%), Gaps = 73/474 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW  M+ G ++ G + E      +M  +    P   T+ +VL +C  +     
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 182

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FV++  +   + + N+++ MY KCG  + A  + + M  +   S++A++S    
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTH 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV-REMQASGVRPNAVTISS 179
            G ++ A  LF+ M    + +WNA+I+G  QN      L L  R +  S + P+  TI+S
Sbjct: 243 LGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR----- 234
           + S  ++  N++ GK++H Y ++     N  V  A+I TYAK+G +  A+R+ D+     
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362

Query: 235 ----------------------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
                                          R ++ WTA+I  Y  +G   +A+ LF  M
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422

Query: 267 LNNGIQPDPVTFTAVLSACAH---------------SGLVDKAWDIFNAMSGQYGIQPSV 311
           +  G +P+  T  AVLS CA                  L++++  + NA+   Y    S 
Sbjct: 423 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSF 482

Query: 312 E----------------HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
                             +  M+  L++  +  EA     +M    V+P    +  +L  
Sbjct: 483 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSA 542

Query: 353 ASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            S +G V  GK   D +    +I PE + +Y  M +L ++AG + EA     +M
Sbjct: 543 CSHAGFVNEGKRYYDQIKNEHQIAPEMS-HYACMVDLLARAGLFSEAQEFIRRM 595



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 172/393 (43%), Gaps = 53/393 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK----CGSLDYARALLDE- 102
           +LQ C  +++   G  +H   +++ +    ++CN L+  Y +     G L  AR L DE 
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 103 -MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
            ++ ++  ++++++S +   G +  A  +F  M      +W  ++ GL +  R    +  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
           + +M A G  P   T++++ S  +       G+++H + VK      + VA ++++ Y K
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGK 211

Query: 222 TGFLHGAQRVFDR-------------------------------FKGRSLIIWTAIISAY 250
            G    A  VF+R                                 GRS++ W A+I+ Y
Sbjct: 212 CGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGY 271

Query: 251 AAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVD-----KAWDIFNAMSGQ 304
             +G  +KA+ LF+ ML+ + + PD  T T+VLSACA+ G V       A+ +   M+  
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 331

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
             +  ++       G +  ARRI + +     M    +   + ALL G    GD+E  + 
Sbjct: 332 SQVTNALISTYAKSGSVENARRIMDQS-----METDLNVISFTALLEGYVKIGDMESAR- 385

Query: 365 VCDHLFEI-EPENTGNYIIMANLYSQAGRWDEA 396
               +F +    +   +  M   Y Q GR DEA
Sbjct: 386 ---EMFGVMNNRDVVAWTAMIVGYEQNGRNDEA 415


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 281/472 (59%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RDIV+WNSMI+GY+Q G+      +F +ML   +L PD  T+ SVL AC     +  
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYSAIISGY 118
           G ++H+ ++ +   +   + NALI MY++CG ++ AR L+++   KD     ++A++ GY
Sbjct: 298 GEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G + +A ++F  +K   +  W A+I G  Q+  +   ++L R M     RPN+ T++
Sbjct: 358 IKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLA 417

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG- 237
           ++ S+ S  ++L  GK+IHG AVK+    ++ V+ A+I  YAK G +  A R FD  +  
Sbjct: 418 AMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCE 477

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R  + WT++I A A HG A +A+ LF  ML  G++PD +T+  V SAC H+GLV++    
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F+ M     I P++ HYACMV +  RA  + EA EF+ KMP++P    WG+LL    +  
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYK 597

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +++LGK   + L  +EPEN+G Y  +ANLYS  G+W+EA ++R+ MK+  + K  G SWI
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    + +F  +D    +  +IY+ ++++   +++ GYV     +L ++EEE
Sbjct: 658 EVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEE 709



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 215/473 (45%), Gaps = 71/473 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD VSW +MI GY   G Y +   +  EM+   +  P   T+ +VL +   +  +  
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGI-EPSQFTLTNVLASVAATRCLET 164

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+F+++  ++ ++ + N+L+ MYAKCG    A+ + D M  KD  S++A+I+ +M 
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQ 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
            G ++ AM  F+ M    + TWN++ISG  Q       LD+  +M + S + P+  T++S
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLAS 284

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD-------------------------------RN 208
           + S  ++   L  G++IH + V   +D                               ++
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344

Query: 209 IYVA--TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           + +   TA++D Y K G ++ A+ +FD  K R ++ WTA+I  Y  HG   +A++LF  M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM 404

Query: 267 LNNGIQPDPVTFTAVLSACAH----------SGLVDKAWDIF-----NAMSGQYGIQPSV 311
           +    +P+  T  A+LS  +            G   K+ +I+     NA+   Y    S+
Sbjct: 405 VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSI 464

Query: 312 E----------------HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
                             +  M+  L++     EA E    M    ++P    +  +   
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524

Query: 353 ASISGDVELGKFVCDHLFEIEP--ENTGNYIIMANLYSQAGRWDEADRVREQM 403
            + +G V  G+   D + +++       +Y  M +L+ +AG   EA    E+M
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 165/382 (43%), Gaps = 69/382 (18%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  VI+S +   +++ N L+ +Y+K G   +AR L DEM  +   S++ ++S Y   G 
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ + + F  + +    +W  +I G     ++   + ++ EM   G+ P+  T++++ + 
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--------- 234
            +    L+ GK++H + VK     N+ V+ ++++ YAK G    A+ VFDR         
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 235 ----------------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-I 271
                                    R ++ W ++IS Y   G   +A+ +F++ML +  +
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 272 QPDPVTFTAVLSACA-----------HSGLVDKAWDI----FNAMSGQYGIQPSVEHYAC 316
            PD  T  +VLSACA           HS +V   +DI     NA+   Y           
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMY----------- 324

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWG--ALLYGASISGDVELGKFVCDHLFEIEP 374
                SR   +  A   + +   K   K+ G  ALL G    GD+   K + D L   + 
Sbjct: 325 -----SRCGGVETARRLIEQRGTK-DLKIEGFTALLDGYIKLGDMNEAKNIFDSL---KD 375

Query: 375 ENTGNYIIMANLYSQAGRWDEA 396
            +   +  M   Y Q G + EA
Sbjct: 376 RDVVAWTAMIVGYEQHGLYGEA 397


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 279/458 (60%), Gaps = 8/458 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M++GY+Q G  EE   LF EM+N+ +  PD  T V+V+ AC    D   
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGI-EPDETTWVTVISACSSRGDPCL 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
              +   + +  I+++ ++  AL+ MYAKCGS+  AR + DE+ + ++ V+++A+IS Y 
Sbjct: 279 AASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYT 338

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G ++ A +LF  M    + TWN++I+G  QN +    ++L +EM  A  + P+ VT+ 
Sbjct: 339 RVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMV 398

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S   H   L+ G  +  +  +N+   +I    A+I  Y++ G +  A+RVF     R
Sbjct: 399 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 458

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ +  +IS +AAHG   +A++L + M   GI+PD VTF  VL+AC+H+GL+++   +F
Sbjct: 459 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 518

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            ++       P+++HYACMV +L R   + +A   + +MP++P A V+G+LL  + I   
Sbjct: 519 ESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 573

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VELG+   + LFE+EP+N+GN+I+++N+Y+ AGRW + +R+RE MK+ G+ K  G SW+E
Sbjct: 574 VELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 633

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             G L  F+  D S ++S+ IY +L  L   MRE GY+
Sbjct: 634 YGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYI 671



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 205/477 (42%), Gaps = 87/477 (18%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + SM+  YS    + +   +F  M    V RPD      ++++ G       G+  
Sbjct: 64  NVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGV-RPDAFVYPILIKSAGNG-----GIGF 117

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAIISGY---- 118
           H  V++     D ++ NA+I MYA+ G + +AR + DE+ D +     ++A++SGY    
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 119 ----------------------MVHGF-----VEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
                                 MV G+     +E A   F  M    + +WNA++SG  Q
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQ 237

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR---- 207
           N   E VL L  EM  +G+ P+  T  ++ S  S     +G   +    V+  + +    
Sbjct: 238 NGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS----RGDPCLAASLVRTLHQKQIQL 293

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRF-------------------------------- 235
           N +V TA++D YAK G +  A+R+FD                                  
Sbjct: 294 NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKA 294
            GR+++ W ++I+ YA +G ++ A+ LF EM+    + PD VT  +V+SAC H G ++  
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 295 -WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            W +      Q  I+ S+  +  M+ + SR   + +A     +M  +     +  L+ G 
Sbjct: 414 NWVVRFLTENQ--IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGF 470

Query: 354 SISGDVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +  G       +   + E  IEP+    +I +    S AG  +E  +V E +K+  +
Sbjct: 471 AAHGHGVEAINLMSTMKEGGIEPDRV-TFIGVLTACSHAGLLEEGRKVFESIKDPAI 526



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 124/328 (37%), Gaps = 75/328 (22%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF     P +  + +++        H  V+ +   MQ  GVRP+A     +       S 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIK-----SA 110

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------------ 237
             GG   H + +K  +  + +V  A+ID YA+ G +  A++VFD                
Sbjct: 111 GNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 238 ---------------------RSLIIWTAII----------------------------- 247
                                R++I WTA++                             
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230

Query: 248 --SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
             S YA +G A + + LF+EM+N GI+PD  T+  V+SAC+  G    A  +   +  Q 
Sbjct: 231 MLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH-QK 289

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            IQ +      ++ + ++   I  A     ++    ++  W A++   +  G+++  +  
Sbjct: 290 QIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSAR-- 347

Query: 366 CDHLFEIEP-ENTGNYIIMANLYSQAGR 392
              LF   P  N   +  M   Y+Q G+
Sbjct: 348 --ELFNTMPGRNVVTWNSMIAGYAQNGQ 373


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 277/469 (59%), Gaps = 7/469 (1%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+++WN +I+ Y++ G +EE + LF  M +  VL P  VT+V VL AC +  D+  G 
Sbjct: 202 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL-PTTVTLVLVLSACSKLKDLRTGK 260

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH++V    ++ +L + NA+I MYA CG +D A  +   M+++D +S++ I+SG+   G
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A + F  M      +W A+I G +++NR +  L+L R MQA+ V+P+  T+ S+ +
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H   L+ G+ I  Y  +N+   +++V  A+ID Y K G +  A+ +F     R    
Sbjct: 381 ACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT 440

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I   A +G   KA+ +F+ ML   I PD +T+  VLSAC H+GLVDK    F  M+
Sbjct: 441 WTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMT 500

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            Q+GI+P++ HY C+V +L+RA R+ EA E +  MP+K ++ VWGALL G  +  + ++ 
Sbjct: 501 SQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 560

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + V   + E+EP+N   Y+++ N+Y+   RW++   +R+ M + G+ K PG S IE +G 
Sbjct: 561 EMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGR 620

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEES 465
           +  FVA D S  +++ I   L+++   ++  GY      V LD  EE+ 
Sbjct: 621 VHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDK 669



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 188/473 (39%), Gaps = 114/473 (24%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN+MI GYS+  F +   +L+ EML   V +PD  T   + +   +   + +G ++
Sbjct: 103 NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV-KPDRYTFPFLFKGFTRDIALEYGRQL 161

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++  ++ ++++  AL+ MY  CG LD AR + D     D ++++ IIS Y   G  
Sbjct: 162 HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKF 221

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E++  LF V                               M+   V P  VT+  + S  
Sbjct: 222 EESRRLFLV-------------------------------MEDKQVLPTTVTLVLVLSAC 250

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S   +L+ GK++H Y    + + N+ +  A+ID YA  G +  A  +F     R +I WT
Sbjct: 251 SKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 310

Query: 245 AIISAYAAHGDA-------------------------------SKAVSLFNEMLNNGIQP 273
            I+S +   G+                                 +A+ LF  M    ++P
Sbjct: 311 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 370

Query: 274 DPVTFTAVLSACAH-----------------------------------SGLVDKAWDIF 298
           D  T  +VL+ACAH                                    G VDKA  IF
Sbjct: 371 DEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIF 430

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASI 355
             MS     Q     +  M+  L+      +A +  S M    + P    +  +L   + 
Sbjct: 431 REMS-----QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 485

Query: 356 SGDVELG-----KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           +G V+ G     +    H   IEP N  +Y  + +L ++AGR  EA  V E M
Sbjct: 486 TGLVDKGRKYFLRMTSQH--GIEP-NIAHYGCLVDLLARAGRLKEAYEVIENM 535



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D VSW +MI GY +   ++E   LFR M  + V +PD  T+VSVL AC     +  
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV-KPDEFTMVSVLTACAHLGALEL 390

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++  + IK DL++ NALI MY KCG +D A ++  EMS +D+ +++A+I G  V
Sbjct: 391 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 450

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD-----LVREMQASGVRPNAV 175
           +G  EKA+D+F  M +  +        G++    H  ++D      +R     G+ PN  
Sbjct: 451 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIA 510

Query: 176 TISSIFSLFSHFSNLKGGKEI 196
               +  L +    LK   E+
Sbjct: 511 HYGCLVDLLARAGRLKEAYEV 531



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 160/399 (40%), Gaps = 77/399 (19%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVH--GFVEKAMDLFQVM 134
           + LI +   C S+D  + +  +   K    + V  + +++    H  G  + A  LF  +
Sbjct: 40  HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEI 99

Query: 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK 194
             P L  WN +I G  + +  +  + L  EM   GV+P+  T   +F  F+    L+ G+
Sbjct: 100 PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 159

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           ++HG+ +K+    N++V TA++  Y   G L  A+ VFD      +I W  IISAY   G
Sbjct: 160 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 219

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSAC----------------------------- 285
              ++  LF  M +  + P  VT   VLSAC                             
Sbjct: 220 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 279

Query: 286 ------AHSGLVDKAWDIFNAMSGQ------------------------YGIQPSVEH-- 313
                 A  G +D A  IF +M+ +                        +   P  ++  
Sbjct: 280 AMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVS 339

Query: 314 YACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
           +  M+    R+ R  EA E    M    VKP      ++L   +  G +ELG+++  +  
Sbjct: 340 WTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY-- 397

Query: 371 EIEPENTGNYIIMAN----LYSQAGRWDEADRVREQMKE 405
            I+     N + + N    +Y + G  D+A+ +  +M +
Sbjct: 398 -IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 278/467 (59%), Gaps = 8/467 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++VSWN MI+G+++ G Y +   +F+ M +   L+PDG +V SVL A G     + G+++
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNM-HLEGLKPDGTSVSSVLPAVGDLDMPLMGIQI 232

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +VI+  +  D ++ +ALI MY KC        + +EM + D  + +A+++G   +G V
Sbjct: 233 HCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLV 292

Query: 125 EKAMDLFQVMKRPGLS--TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           + A+++F+  K   L+  +W ++I+   QN +    L+L REMQ  GV+PN+VTI  +  
Sbjct: 293 DNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLP 352

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
              + + L  GK  H ++++N    ++YV +A+ID YAK G +  ++  FD    R+L+ 
Sbjct: 353 ACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVS 412

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++++ YA HG   +A+++F  M   G +PD V+FT VLSAC   GL ++ W  F++MS
Sbjct: 413 WNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMS 472

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             +G++  +EHY+CMV +L R+ R+ EA   + +MP +P + VWGALL    +   V+LG
Sbjct: 473 RNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLG 532

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     +FE+EP N GNYI+++N+Y+    W E D VR+ M+  GL K PG SWIE    
Sbjct: 533 EIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNK 592

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           +   +A D+S  +  QI   L +L   M++ GYV     +L +VEE+
Sbjct: 593 VHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQ 639



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 178/393 (45%), Gaps = 50/393 (12%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           +S    I  +S+   +     +F  ML   ++ PD   + +V++ C   S +  G ++H 
Sbjct: 40  ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIV-PDSRVLPTVIKTCAALSALQTGKQMHC 98

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           F + S + +D  + ++L+ MY +   L  AR + D++     V+ SA+IS +   G V++
Sbjct: 99  FALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKE 158

Query: 127 AMDLFQVMKRPG----LSTWNAVISGLVQNNRHEAVLDLV---REMQASGVRPNAVTISS 179
             +LF   +  G    L +WN +ISG    NR  + LD V   + M   G++P+  ++SS
Sbjct: 159 TKELFYQTRDLGVELNLVSWNGMISGF---NRSGSYLDAVLMFQNMHLEGLKPDGTSVSS 215

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK------------------ 221
           +            G +IH Y +K     + +V +A+ID Y K                  
Sbjct: 216 VLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVD 275

Query: 222 -------------TGFLHGAQRVFDRFKGRSL--IIWTAIISAYAAHGDASKAVSLFNEM 266
                         G +  A  VF +FKG  L  + WT++I++ + +G   +A+ LF EM
Sbjct: 276 VGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREM 335

Query: 267 LNNGIQPDPVTFTAVLSACAHSG--LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
              G++P+ VT   +L AC +    L  KA   F   S + GI   V   + ++ + ++ 
Sbjct: 336 QIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCF---SLRNGIFNDVYVGSALIDMYAKC 392

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            R+  +      MP + +   W +L+ G ++ G
Sbjct: 393 GRMLASRLCFDMMPNR-NLVSWNSLMAGYAMHG 424



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 11/257 (4%)

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
           N    V+ +   M   G+ P++  + ++    +  S L+ GK++H +A+ +    +  V 
Sbjct: 53  NHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVL 112

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           ++++  Y +   L  A+ VFD+     ++  +A+IS +A  G   +   LF +  + G++
Sbjct: 113 SSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVE 172

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP---SVEHYACMVGVLSRARRISE 329
            + V++  ++S    SG    A  +F  M  + G++P   SV      VG L       +
Sbjct: 173 LNLVSWNGMISGFNRSGSYLDAVLMFQNMHLE-GLKPDGTSVSSVLPAVGDLDMPLMGIQ 231

Query: 330 ATEFVSKMPVKPSAKVWGAL--LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387
              +V K  + P   V  AL  +YG         G F      E++  + G    +    
Sbjct: 232 IHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFN-----EMDEVDVGACNALVTGL 286

Query: 388 SQAGRWDEADRVREQMK 404
           S+ G  D A  V +Q K
Sbjct: 287 SRNGLVDNALEVFKQFK 303



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 16/183 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNS++AGY+  G   E   +F E++     +PD V+   VL AC Q      
Sbjct: 405 MPNRNLVSWNSLMAGYAMHGKTFEAINIF-ELMQRCGQKPDHVSFTCVLSACTQGGLTEE 463

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G    + +  +H    +M+ + C  ++ +  + G L+ A A++ +M  + D   + A++S
Sbjct: 464 GWFYFDSMSRNHGVEARMEHYSC--MVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLS 521

Query: 117 GYMVHGFVE----KAMDLFQVMKR-PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GV 170
              VH  V+     A  +F++  R PG      ++S +  +      +D+VR+M  S G+
Sbjct: 522 SCRVHNRVDLGEIAAKRVFELEPRNPGNYI---LLSNIYASKAMWVEVDMVRDMMRSRGL 578

Query: 171 RPN 173
           + N
Sbjct: 579 KKN 581


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 277/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSWN+MIAGY+Q G   +   LF  ML+   + PD  T+ SVL AC    ++  
Sbjct: 256 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
           G +VH +++ + +  +  + NALI  YAK GS++ AR ++D+   +D + +S++A++ GY
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G +E A ++F VM    +  W A+I G  QN R++  +DL R M   G  PN+ T++
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S+ +  + L  GK+IH  A+++  +++  V+ AII  YA++G    A+R+FD+   R
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              I WT++I A A HG   +AV LF EML  G++PD +T+  VLSAC+H+G V++    
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRY 555

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ +  ++ I P + HYACMV +L+RA   SEA EF+ +MPV+P A  WG+LL    +  
Sbjct: 556 YDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHK 615

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + EL +   + L  I+P N+G Y  +AN+YS  GRW +A R+ +  KE  + K  G SW 
Sbjct: 616 NAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWT 675

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                +  F A D    + + +Y +  R+   ++  G+V     +L +V++E
Sbjct: 676 HIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDE 727



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 208/474 (43%), Gaps = 73/474 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW  M+ G ++ G + E      +M  +    P   T+ +VL +C  +     
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 182

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FV++  +   + + N+++ MY KCG  + A  + + M  +   S++A++S    
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTH 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV-REMQASGVRPNAVTISS 179
            G ++ A  LF+ M    + +WNA+I+G  QN      L L  R +  S + P+  TI+S
Sbjct: 243 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR----- 234
           + S  ++  N++ GK++H Y ++     N  V  A+I TYAK+G +  A+R+ D+     
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362

Query: 235 ----------------------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
                                          R ++ WTA+I  Y  +G   +A+ LF  M
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422

Query: 267 LNNGIQPDPVTFTAVLSACAH---------------SGLVDKAWDIFNAMSGQYGIQPSV 311
           +  G +P+  T  AVLS CA                  L++++  + NA+   Y    S 
Sbjct: 423 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSF 482

Query: 312 E----------------HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
                             +  M+  L++  +  EA     +M    V+P    +  +L  
Sbjct: 483 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSA 542

Query: 353 ASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            S +G V  GK   D +    +I PE   +Y  M +L ++AG + EA     +M
Sbjct: 543 CSHAGFVNEGKRYYDQIKNEHQIAPE-MSHYACMVDLLARAGLFSEAQEFIRRM 595



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 171/393 (43%), Gaps = 53/393 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK----CGSLDYARALLDE- 102
           +LQ C  +++   G  +H   +++ +    ++CN L+  Y +     G L  AR L DE 
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 103 -MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
            ++ ++  ++++++S +   G +  A  +F  M      +W  ++ GL +  R    +  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
           + +M A G  P   T++++ S  +       G+++H + VK      + VA ++++ Y K
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGK 211

Query: 222 TGFLHGAQRVFDR-------------------------------FKGRSLIIWTAIISAY 250
            G    A  VF+R                                  RS++ W A+I+ Y
Sbjct: 212 CGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY 271

Query: 251 AAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVD-----KAWDIFNAMSGQ 304
             +G  +KA+ LF+ ML+ + + PD  T T+VLSACA+ G V       A+ +   M+  
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 331

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
             +  ++       G +  ARRI + +     M    +   + ALL G    GD+E  + 
Sbjct: 332 SQVTNALISTYAKSGSVENARRIMDQS-----METDLNVISFTALLEGYVKIGDMESAR- 385

Query: 365 VCDHLFEI-EPENTGNYIIMANLYSQAGRWDEA 396
               +F +    +   +  M   Y Q GR DEA
Sbjct: 386 ---EMFGVMNNRDVVAWTAMIVGYEQNGRNDEA 415


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 277/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSWN+MIAGY+Q G   +   LF  ML+   + PD  T+ SVL AC    ++  
Sbjct: 150 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 209

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
           G +VH +++ + +  +  + NALI  YAK GS++ AR ++D+   +D + +S++A++ GY
Sbjct: 210 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 269

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G +E A ++F VM    +  W A+I G  QN R++  +DL R M   G  PN+ T++
Sbjct: 270 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 329

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S+ +  + L  GK+IH  A+++  +++  V+ AII  YA++G    A+R+FD+   R
Sbjct: 330 AVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWR 389

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              I WT++I A A HG   +AV LF EML  G++PD +T+  VLSAC+H+G V++    
Sbjct: 390 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRY 449

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ +  ++ I P + HYACMV +L+RA   SEA EF+ +MPV+P A  WG+LL    +  
Sbjct: 450 YDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHK 509

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + EL +   + L  I+P N+G Y  +AN+YS  GRW +A R+ +  KE  + K  G SW 
Sbjct: 510 NAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWT 569

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                +  F A D    + + +Y +  R+   ++  G+V     +L +V++E
Sbjct: 570 HIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDE 621



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 208/474 (43%), Gaps = 73/474 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW  M+ G ++ G + E      +M  +    P   T+ +VL +C  +     
Sbjct: 18  MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 76

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FV++  +   + + N+++ MY KCG  + A  + + M  +   S++A++S    
Sbjct: 77  GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTH 136

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV-REMQASGVRPNAVTISS 179
            G ++ A  LF+ M    + +WNA+I+G  QN      L L  R +  S + P+  TI+S
Sbjct: 137 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 196

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR----- 234
           + S  ++  N++ GK++H Y ++     N  V  A+I TYAK+G +  A+R+ D+     
Sbjct: 197 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 256

Query: 235 ----------------------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
                                          R ++ WTA+I  Y  +G   +A+ LF  M
Sbjct: 257 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 316

Query: 267 LNNGIQPDPVTFTAVLSACAH---------------SGLVDKAWDIFNAMSGQYGIQPSV 311
           +  G +P+  T  AVLS CA                  L++++  + NA+   Y    S 
Sbjct: 317 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSF 376

Query: 312 E----------------HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
                             +  M+  L++  +  EA     +M    V+P    +  +L  
Sbjct: 377 PWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSA 436

Query: 353 ASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            S +G V  GK   D +    +I PE   +Y  M +L ++AG + EA     +M
Sbjct: 437 CSHAGFVNEGKRYYDQIKNEHQIAPE-MSHYACMVDLLARAGLFSEAQEFIRRM 489



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           +AK+G L  A+ VF     R  + WT ++      G   +A+    +M  +G  P   T 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 279 TAVLSACA--HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           T VLS+CA   +G V +    F    G     P       M G    +     AT    +
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE---TATTVFER 118

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKF-VCDHLFEIEPENT 377
           MPV+ S   W A+     +S +  LG+  + + LFE  P+ +
Sbjct: 119 MPVR-SVSSWNAM-----VSLNTHLGRMDLAESLFESMPDRS 154


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/524 (34%), Positives = 300/524 (57%), Gaps = 59/524 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD++SWNSMI+GY   G  E    ++++M+   +   D  T++SVL  C  S  +  
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGI-DVDLATIISVLVGCANSGTLSL 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  I+S  +  +   N L+ MY+KCG LD A  + ++M +++ VS++++I+GY  
Sbjct: 270 GKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 121 HGFVEKAMDLFQVMKRPGL--------STWNAVI-SGLVQNNR--HE------------- 156
            G  + A+ L Q M++ G+        S  +A   SG + N +  H+             
Sbjct: 330 DGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 157 --AVLDLVREMQA-----------------------SGVRPNAVTISSIFSLFSHFSNLK 191
             A++D+  +  +                         ++P++ T++ I    +  S L+
Sbjct: 390 CNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALE 449

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GKEIHGY ++N Y  + +VA A++D Y K G L  A+ +FD    + L+ WT +IS Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYG 509

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            HG  ++A++ FNEM + GI+PD V+F ++L AC+HSGL+++ W  F  M   + I+P +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
           EHYACMV +LSR   +S+A EF+  +P+ P A +WGALL G  I  D+EL + V + +FE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE 629

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA-KD 430
           +EPENTG Y+++AN+Y++A +W+E  R+RE++ + GL K PG SWIE  G +  FV+  +
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNN 689

Query: 431 TSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
           +S   S++I  +L+++   M+EEGY        +  DE+++E A
Sbjct: 690 SSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMA 733



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 160/316 (50%), Gaps = 23/316 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R +  +N+ I  + Q G  E    L      S +   +  T  SVLQ C  S  +  G +
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL---ETKTYSSVLQLCAGSKSLTDGKK 120

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+ +  +++ +D  +   L+ +YA CG L   R + D M  K+   ++ ++S Y   G 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 124 VEKAMDLFQVM-------KRP-------------GLSTWNAVISGLVQNNRHEAVLDLVR 163
            ++++ LF++M       KRP              + +WN++ISG V N   E  L++ +
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           +M   G+  +  TI S+    ++   L  GK +H  A+K+ ++R I  +  ++D Y+K G
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L GA RVF++   R+++ WT++I+ Y   G +  A+ L  +M   G++ D V  T++L 
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILH 360

Query: 284 ACAHSGLVDKAWDIFN 299
           ACA SG +D   D+ +
Sbjct: 361 ACARSGSLDNGKDVHD 376



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 144/366 (39%), Gaps = 82/366 (22%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D+    Y+A I  +   G +E AM+L  + ++  L T     S ++Q       L   ++
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELET--KTYSSVLQLCAGSKSLTDGKK 120

Query: 165 MQASGVRPNAVTISSIF-----SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           +  S ++ N V +  +      SL++   +LK G+ +     K    +N+Y+   ++  Y
Sbjct: 121 VH-SIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEK----KNVYLWNFMVSEY 175

Query: 220 AKTGFL--------------------HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           AK G                        A  +FD+   R +I W ++IS Y ++G   + 
Sbjct: 176 AKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERG 235

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGL----------------------------- 290
           + ++ +M+  GI  D  T  +VL  CA+SG                              
Sbjct: 236 LEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDM 295

Query: 291 ------VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKP 341
                 +D A  +F  M      + +V  +  M+   +R  R   A   + +M    VK 
Sbjct: 296 YSKCGDLDGALRVFEKMG-----ERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKL 350

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN----LYSQAGRWDEAD 397
                 ++L+  + SG ++ GK V D+   I+  N  + + + N    +Y++ G  D A+
Sbjct: 351 DVVATTSILHACARSGSLDNGKDVHDY---IKANNMESNLFVCNALMDMYTKCGSMDGAN 407

Query: 398 RVREQM 403
            V   M
Sbjct: 408 SVFSTM 413


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  337 bits (864), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 271/456 (59%), Gaps = 5/456 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+WNSMI G  + G   E   +++EM  +  +RP+ +T++ ++ +C Q  D+  G E
Sbjct: 222 RDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEITMIGMISSCSQVQDLNLGKE 280

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H ++ E  ++  + + NAL+ MY KCG L  AR L D M+ K  VS++ ++ GY   GF
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGF 340

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A ++   +    +  WNA+ISG VQ  + +  L L  EMQ   + P+ VT+ +  S 
Sbjct: 341 LDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSA 400

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  IH Y  +++   ++ + TA++D YAK G +  A +VF+    R+ + W
Sbjct: 401 CSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTW 460

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+I   A HG+A  A+S F++M++ GI PD +TF  VLSAC H GLV++    F+ MS 
Sbjct: 461 TAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSS 520

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P ++HY+CMV +L RA  + EA E V  MP+   A V GAL +   + G+V++G+
Sbjct: 521 KFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGE 580

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L EI+P+++GNY+++A++YS+A  W EA   R+ M + G+ K PG S +E +G +
Sbjct: 581 RTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIV 640

Query: 424 QSFVAKDTSGDKSEQIYLIL----ERLLGLMREEGY 455
             FV +D S  +SE IY  L    ++L  ++R+ GY
Sbjct: 641 HEFVVRDVSHPQSEWIYECLVTLTKQLDVIVRKHGY 676



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 200/484 (41%), Gaps = 103/484 (21%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ SWN+ I GY + G  E    L++ ML    L+PD  T   +L+ C        G+ V
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              V++   + D+++ NA I M   CG L  A  + ++   +D V+++++I+G +  G  
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+ ++                               +EM+A  VRPN +T+  + S  
Sbjct: 241 IEAIKIY-------------------------------KEMEAEKVRPNEITMIGMISSC 269

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S   +L  GKE H Y  ++  +  I +  A++D Y K G L  A+ +FD    ++L+ WT
Sbjct: 270 SQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWT 329

Query: 245 AIISAYAAHG-------------------------------DASKAVSLFNEMLNNGIQP 273
            ++  YA  G                                  +A++LF+EM    I+P
Sbjct: 330 TMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEP 389

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D VT    LSAC+  G +D    I + +  ++ +   V     +V + ++   I+ A + 
Sbjct: 390 DKVTMVNCLSACSQLGALDVGIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQV 448

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVE---------------------LGKF-VCDH--- 368
             ++P + +   W A++ G ++ G+ +                     LG    C H   
Sbjct: 449 FEEIPQR-NCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGL 507

Query: 369 -------------LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
                         F + P+   +Y  M +L  +AG  +EA+ + + M  +  A + G  
Sbjct: 508 VEEGRKYFSEMSSKFNVSPK-LKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGAL 566

Query: 416 WIEC 419
           +  C
Sbjct: 567 FFAC 570



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 41/239 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYE-------------------------------ECKALF 29
           M+++ +VSW +M+ GY++ GF +                               E  ALF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            EM     + PD VT+V+ L AC Q   +  G+ +H+++    + +D+ +  AL+ MYAK
Sbjct: 380 HEM-QIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAK 438

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAV 145
           CG++  A  + +E+  ++ ++++A+I G  +HG  + A+  F  M   G+     T+  V
Sbjct: 439 CGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGV 498

Query: 146 ISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           +S        E       EM +   V P     S +  L     +L+  +E+    VKN
Sbjct: 499 LSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEEL----VKN 553


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 266/456 (58%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++ +WNSM AGY++ G +EE   LF EML   + R D VT+VSVL ACG+ +D+  
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDI-RFDEVTLVSVLTACGRLADLEL 243

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  ++ +V E  +K +  +  +L+ MYAKCG +D AR L D+                  
Sbjct: 244 GEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQ------------------ 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                        M R  +  W+A+ISG  Q +R    LDL  EMQ + + PN +T+ SI
Sbjct: 286 -------------MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSI 332

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ GK +H +  K R    + + TA++D YAK G +  +  VF +   +++
Sbjct: 333 LSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNV 392

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I   A++G   KA+  F  ML   ++P+ VTF  VLSAC+H+GLVD+  D+F +
Sbjct: 393 LSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVS 452

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  +GI+P +EHY CMV +L RA  I EA +F+  MP++P+A +W  LL    +  +VE
Sbjct: 453 MSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVE 512

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+     L  +EP ++G+YI+++N+Y+  GRW++A +VR +MKE G+ K PG S IE  
Sbjct: 513 IGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELD 572

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G +  F A+D    +SE+IY  +E ++  ++  GYV
Sbjct: 573 GVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYV 608



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 188/397 (47%), Gaps = 45/397 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D  ++N MI G++      E   LF+EM  + V +PD  T   +L+ C +   +  G ++
Sbjct: 88  DSPAYNIMIRGFTLKQSPHEAILLFKEMHENSV-QPDEFTFPCILKVCSRLQALSEGEQI 146

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++       ++ N LI MYA CG ++ AR + DEMS+++  +++++ +GY   G  
Sbjct: 147 HALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG-- 204

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            W             E V+ L  EM    +R + VT+ S+ +  
Sbjct: 205 ----------------NW-------------EEVVKLFHEMLELDIRFDEVTLVSVLTAC 235

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
              ++L+ G+ I+ Y  +     N  + T+++D YAK G +  A+R+FD+   R ++ W+
Sbjct: 236 GRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWS 295

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSG 303
           A+IS Y+      +A+ LF+EM    I P+ +T  ++LS+CA  G ++   W  F     
Sbjct: 296 AMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKK 355

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +  +  +V     ++   ++   +  + E   KMPVK +   W  L+ G + +G    GK
Sbjct: 356 RMKL--TVTLGTALMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVLIQGLASNGQ---GK 409

Query: 364 FVCDHLF-----EIEPENTGNYIIMANLYSQAGRWDE 395
              ++ +      +EP N   +I + +  S AG  DE
Sbjct: 410 KALEYFYLMLEKNVEP-NDVTFIGVLSACSHAGLVDE 445



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 157/362 (43%), Gaps = 60/362 (16%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGL-VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           A+ +F+ +  P    +N +I G  ++ + HEA+L L +EM  + V+P+  T   I  + S
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAIL-LFKEMHENSVQPDEFTFPCILKVCS 135

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L  G++IH   +K  +  + +V   +I  YA  G +  A+RVFD    R++  W +
Sbjct: 136 RLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNS 195

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-------------------- 285
           + + Y   G+  + V LF+EML   I+ D VT  +VL+AC                    
Sbjct: 196 MFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKG 255

Query: 286 ---------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
                          A  G VD A  +F+ M  +      V  ++ M+   S+A R  EA
Sbjct: 256 LKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR-----DVVAWSAMISGYSQASRCREA 310

Query: 331 TEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA--- 384
            +   +M    + P+     ++L   ++ G +E GK+V  H F I+ +     + +    
Sbjct: 311 LDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWV--HFF-IKKKRMKLTVTLGTAL 367

Query: 385 -NLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
            + Y++ G  + +  V          K+P ++ +  +  +Q   +        E  YL+L
Sbjct: 368 MDFYAKCGSVESSIEV--------FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLML 419

Query: 444 ER 445
           E+
Sbjct: 420 EK 421


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 272/458 (59%), Gaps = 3/458 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+RDIVSWNSMIAG +Q GF  E    F  +L    L+PD  ++ S L AC     + F
Sbjct: 199 LSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSF 258

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G ++H +++ +       + NALI MYAK G ++ AR ++++  +SD D ++++A+++GY
Sbjct: 259 GKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGY 318

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G +  A  +F  +K P +  W A+I G VQN  +   +++ + M + G RPN+ T++
Sbjct: 319 VKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLA 378

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-G 237
           ++ S  S  ++L  GK+IH  A+++    +  V  A+   YAK G ++GA++VF+  +  
Sbjct: 379 AMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQN 438

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R  + WT++I A A HG   +A+ LF +ML  GI+PD +T+  VLSAC H GLV++    
Sbjct: 439 RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSY 498

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F+ M   + I P++ HYACMV +  RA  + EA +FV  MP++P    WG+LL    +  
Sbjct: 499 FDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYK 558

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +V+L K   + L  IEP N+G Y  +AN+YS  G+WD+A ++R+ MK  G+ K  G SW+
Sbjct: 559 NVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWV 618

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +       F  +D    + ++IY +++++   +++ G+
Sbjct: 619 QIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGF 656



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 220/414 (53%), Gaps = 20/414 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD VSW ++I GY+Q G +E+   +F +M+   VL P   T+ +VL +C  +     G +
Sbjct: 70  RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL-PTQFTLTNVLASCAATGSRGIGKK 128

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+FV++  +   + + N+L+ MYAK G L  A+ + D M  ++  S++A+IS +M  G 
Sbjct: 129 VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGR 188

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNN-RHEAVLDLVREMQASGVRPNAVTISSIFS 182
           V+ A+  F+++    + +WN++I+G  Q+   +EA+      ++ + ++P+  +++S  S
Sbjct: 189 VDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALS 248

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL 240
             ++   L  GK+IHGY V+  +D +  V  A+I  YAK+G +  A+R+ ++       +
Sbjct: 249 ACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDV 308

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I +TA+++ Y   GD + A  +FN + +    PD V +TA++     +GL + A ++F  
Sbjct: 309 IAFTALLNGYVKLGDITPARQIFNSLKD----PDVVAWTAMIVGYVQNGLNNDAIEVFKT 364

Query: 301 MSGQYGIQPSVEHYACM------VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           M  + G +P+    A M      V  L+  ++I  A+   S   + PS  V  AL    +
Sbjct: 365 MVSE-GPRPNSFTLAAMLSASSSVTSLNHGKQI-HASAIRSGEALSPS--VGNALTTMYA 420

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +G +   + V + L +     +   +IMA   +Q G  +EA  + EQM   G+
Sbjct: 421 KAGSINGARKVFNLLRQNRDTVSWTSMIMA--LAQHGLGEEAIELFEQMLTLGI 472



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 147/299 (49%), Gaps = 7/299 (2%)

Query: 73  IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQ 132
           +   +++ N L+ +YAK G    A  L +EM  K   S++ I+SGY   G +EKA  +F 
Sbjct: 6   LTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFD 65

Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
           ++      +W  +I G  Q  R E  + +  +M    V P   T++++ +  +   +   
Sbjct: 66  LIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGI 125

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           GK++H + VK      + VA ++++ YAKTG L  A+ VFDR K R+   W A+IS +  
Sbjct: 126 GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMN 185

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE 312
            G    A++ F E+L+   + D V++ ++++ C   G  ++A   F+++     ++P   
Sbjct: 186 CGRVDLALAQF-ELLS---ERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRF 241

Query: 313 HYACMVGVLSRARRISEATE---FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
             A  +   +   ++S   +   ++ +     S  V  AL+   + SG VE+ + + + 
Sbjct: 242 SLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 302/524 (57%), Gaps = 59/524 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD++SWNSMI+GY   G  E    ++++M+   +   D  T++SVL  C +S  +  
Sbjct: 73  LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCAKSGTLSL 131

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  I+S  +  +   N L+ MY+KCG LD A  + ++M +++ VS++++I+GY  
Sbjct: 132 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 191

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVI---------SGLVQNNR--HE------------- 156
            G+ + A+ L Q M++ G+      I         SG + N +  H+             
Sbjct: 192 DGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFV 251

Query: 157 --AVLDLVRE---MQASG--------------------VRPNAVTISSIFSLFSHFSNLK 191
             A++D+  +   M+ +                     ++P++ T++ I    +  S L+
Sbjct: 252 CNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALE 311

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GKEIHGY ++N Y  + +VA A++D Y K G L  A+ +FD    + L+ WT +I+ Y 
Sbjct: 312 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 371

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            HG  ++A++ FNEM + GI+PD V+F ++L AC+HSGL+++ W  F  M   + I+P +
Sbjct: 372 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 431

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
           EHYACMV +LSR   +S+A +F+  +P+ P A +WGALL G  I  D+EL + V + +FE
Sbjct: 432 EHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE 491

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA-KD 430
           +EPENTG Y+++AN+Y++A +W+E  R+RE++ + GL K PG SWIE  G +  FV+  +
Sbjct: 492 LEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNN 551

Query: 431 TSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
           +S   S++I  +L+++   M+EEGY        +  DE+++E A
Sbjct: 552 SSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMA 595



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 20/237 (8%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS-- 140
           L+  YA CG L   R + D M  K+   ++ ++S Y   G  ++++ LF++M   G+   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 141 ------------------TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             +WN++ISG V N   E  L + ++M   G+  +  TI S+  
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L  GK +H  A+K+ ++R I  +  ++D Y+K G L GA RVF++   R+++ 
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           WT++I+ Y   G +  A+ L  +M   G++ D V  T++L ACA SG +D   D+ +
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 238


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 276/455 (60%), Gaps = 5/455 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +IVSWN +++G+++ G+++E   +F++M +     PD VTV SVL + G S ++  G ++
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFC-PDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +VI+  +  D  + +A++ MY K G +     L DE    +    +A I+G   +G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +KA+++F + K   +     +W ++I+G  QN +    L+L REMQ +GV+PN VTI S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                + + L  G+  HG+AV+     +++V +A+ID YAK G +  +Q VF+    ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++ Y+ HG A + +S+F  ++   ++PD ++FT++LSAC   GL D+ W  FN 
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+P +EHY+CMV +L RA ++ EA + + ++P +P + VWGALL    +  +V+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVD 574

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     LF +EPEN G Y++M+N+Y+  G W E D +R +M+  GL K PG SWI+  
Sbjct: 575 LAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             + + +A D S  + +QI   ++ +   MR+ G+
Sbjct: 635 NKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGH 669



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 203/411 (49%), Gaps = 14/411 (3%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + S++S+I   ++   + +   +F  M +  ++ PD   + ++ + C + S    G ++H
Sbjct: 81  VYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLI-PDTHVLPNLFKVCAELSAFKAGKQIH 139

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                S + MD ++  +L  MY +CG +  AR + D MS+KD V+ SA++ GY   G +E
Sbjct: 140 CVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLE 199

Query: 126 KAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           + + +   M++    P + +WN ++SG  ++  H+  + + ++M   G  P+ VT+SS+ 
Sbjct: 200 EVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVL 259

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                  NL  G++IHGY +K    ++  V +A++D Y K+G ++G  ++FD F+     
Sbjct: 260 PSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETG 319

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +  A I+  + +G   KA+ +F       ++ + V++T++++ CA +G   +A ++F  M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMPVKPSAKVWGALLYGASISGD 358
               G++P+      M+        +        F  ++ +     V  AL+   +  G 
Sbjct: 380 Q-VAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGR 438

Query: 359 VELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +++ + V    F + P +N   +  + N YS  G+  E   + E +  + L
Sbjct: 439 IKMSQIV----FNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRL 485



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 102/207 (49%), Gaps = 1/207 (0%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +AR +L   +  D    + +I+ Y  +     A  + Q +  P + +++++I  L +   
Sbjct: 38  HAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKL 96

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
               + +   M + G+ P+   + ++F + +  S  K GK+IH  A  +  D + +V  +
Sbjct: 97  FSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGS 156

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +   Y + G +  A++VFDR   + ++  +A++  YA  G   + V + +EM  +GI+P+
Sbjct: 157 LFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN 216

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAM 301
            V++  +LS    SG   +A  +F  M
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVIMFQKM 243



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++V WNS++ GYS  G  +E  ++F  ++ +  L+PD ++  S+L ACGQ      
Sbjct: 449 MPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G +  N + E + IK  L   + ++ +  + G L  A  L+ E+  + D   + A+++  
Sbjct: 508 GWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSC 567

Query: 119 MVHGFVEKA 127
            +   V+ A
Sbjct: 568 RLQNNVDLA 576


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/470 (37%), Positives = 275/470 (58%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D+VSWNSMI+ ++QG   E+   LF +M    V+ P+ VT+V VL AC +  D+ F
Sbjct: 187 ISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVM-PNSVTMVGVLSACAKKLDLEF 245

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V +++    IK+DL +CNA++ MY KCGS+D A+ L DEM ++D  S++ ++ GY  
Sbjct: 246 GRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAK 305

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV-RPNAVTISS 179
            G  + A  +F  M    ++ WN +IS   QN + +  L +  E+Q S + +P+ VT+ S
Sbjct: 306 MGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVS 365

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S  +    +  G  IH Y  +     N ++ ++++D YAK G L  A  VF   + R 
Sbjct: 366 TLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERD 425

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + +W+A+I+    HG    A+ LF EM    ++P+ VTFT VL AC+H+GLVD+    F+
Sbjct: 426 VYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFH 485

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YG+ P ++HYACMV +L RA  + EA E +++M   PSA VWGALL   S+  +V
Sbjct: 486 EMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNV 545

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+   D L ++EP N G  ++++N+Y++ GRW++   +R+ M+++ L K PG S IE 
Sbjct: 546 ELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEA 605

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           +G +  F+  D +   S  IY  LE +   ++  GY      LL  +EE+
Sbjct: 606 NGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEED 655



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 195/414 (47%), Gaps = 20/414 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + ++ +WN++I  Y+      +   +F ++L+     P+  T   V++A  +      
Sbjct: 85  IPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRV 144

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH   I+    MDL+I N+L+  Y  CG L  A  L   +S KD VS++++IS +  
Sbjct: 145 GTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQ 204

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVT 176
               E A++LF  M+R  +   +  + G++     +  L+  R     ++  G++ +   
Sbjct: 205 GNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTL 264

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +++  +++   ++   +++         +R+++  T ++D YAK G    A+ VF+   
Sbjct: 265 CNAMLDMYTKCGSVDDAQKL----FDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMP 320

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVD-KA 294
            + +  W  +ISAY  +G   +A+++FNE+ L+   +PD VT  + LSACA  G +D   
Sbjct: 321 VKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGG 380

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           W   +    + GI  +    + +V + ++   + +A E    +  +    VW A++ G  
Sbjct: 381 W--IHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER-DVYVWSAMIAGLG 437

Query: 355 ISGDVELGKFVCDHLFEI-EPENTGNYIIMANLY---SQAGRWDEADRVREQMK 404
           + G    GK   D  FE+ E +   N +   N+    S AG  DE      +M+
Sbjct: 438 MHGR---GKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEME 488



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 20/313 (6%)

Query: 107 DEVSYSAIISGYMVHGF--VEKAMDLFQVMKRPGLSTWNAVISGLV-QNNRHEAVLDLVR 163
           D  S S + +   +  F  ++ A +LF  + +P L TWN +I      ++  ++ +  + 
Sbjct: 56  DPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLD 115

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            +      PN  T   +    S     + G  +HG A+K  +  ++Y+  +++  Y   G
Sbjct: 116 LLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACG 175

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L  A+R+F     + ++ W ++ISA+A       A+ LF +M    + P+ VT   VLS
Sbjct: 176 DLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLS 235

Query: 284 ACAHSGLVDKAWDI-FNAMSGQY----GIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
           ACA      K  D+ F      Y    GI+  +     M+ + ++   + +A +   +MP
Sbjct: 236 ACA------KKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP 289

Query: 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEAD 397
            +     W  +L G +  GD +  + V    F   P +    + ++ + Y Q G+  EA 
Sbjct: 290 ER-DVFSWTIMLDGYAKMGDYDAARLV----FNAMPVKEIAAWNVLISAYEQNGKPKEAL 344

Query: 398 RVREQMKESGLAK 410
            +  +++ S +AK
Sbjct: 345 AIFNELQLSKIAK 357



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 55/272 (20%)

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF--LHGAQRVFDRFKG 237
           I S     S+ K  KE+H   ++     + + A+ +    A + F  L  A+ +FD+   
Sbjct: 28  ILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWD 296
            +L  W  +I AYA+  D  ++  +F ++L+     P+  TF  V+ A +      KA  
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASEL----KASR 143

Query: 297 IFNAMSGQ----------YGIQPSVEHY-ACMVGVLSRARRI------------------ 327
           +  A+ G           Y +   V  Y AC  G LS A R+                  
Sbjct: 144 VGTAVHGMAIKLSFGMDLYILNSLVRFYGAC--GDLSMAERLFKGISCKDVVSWNSMISA 201

Query: 328 -------SEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
                   +A E   KM    V P++     +L   +   D+E G++VC +   IE +  
Sbjct: 202 FAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY---IERKGI 258

Query: 378 GNYIIMAN----LYSQAGRWDEADRVREQMKE 405
              + + N    +Y++ G  D+A ++ ++M E
Sbjct: 259 KVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPE 290


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 281/466 (60%), Gaps = 7/466 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN+ +  +++G    +  +LF  +    +  PD  T   VL+AC +  D+  G  V
Sbjct: 77  EVTHWNTCLRSFAEGDSPADAISLFYRLREFDI-SPDHYTCSFVLKACSRLLDVRNGKIV 135

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +V +  ++ ++++ N ++ +YA CG +  AR + D+M  +D ++++ +I+  +  G  
Sbjct: 136 HGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDA 195

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  LF  M    + +W ++I G  Q  + +  +DL  EM+ +G+ PN VT+ ++    
Sbjct: 196 EGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVAC 255

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   NL  G+ IH ++ ++ Y++NI V   +ID Y K G L  A R+FD  + R+++ W+
Sbjct: 256 ADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWS 315

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+  AAHG A  A++LFN+M+N G++P+ VTF  +L AC+H G+V+K    F +M+  
Sbjct: 316 AMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD 375

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI P +EHY CMV + SRA  + EA EF+  MP+ P+  VWGALL G  +  +++L + 
Sbjct: 376 YGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEE 435

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              HL +++P N G Y++++N+Y++AGRW++  RVR+ M++ G+ K PG S I   G + 
Sbjct: 436 ATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVY 495

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           +FVA D +  ++E+I+   E+LL  M+ +GY      VLLD  E++
Sbjct: 496 NFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQ 541



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 137/291 (47%), Gaps = 48/291 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SW SMI GY+Q G  +E   LF EM ++ +L P+ VTVV+VL AC    ++V 
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PNEVTVVAVLVACADMGNLVL 263

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+F   S  + ++ +CN LI MY KCG L+ A  + D M ++  VS+SA+I+G   
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+ LF                                +M  +GV+PNAVT   I
Sbjct: 324 HGRAEDALALFN-------------------------------KMINTGVKPNAVTFIGI 352

Query: 181 FSLFSHFSNLKGGKE-----IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR-VFDR 234
               SH   ++ G++        Y +  R +        ++D +++ G L  A   + + 
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEH----YGCMVDLFSRAGLLQEAHEFIMNM 408

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT--FTAVLS 283
               + ++W A++     H    K + L  E   +  + DP+   +  VLS
Sbjct: 409 PIAPNGVVWGALLGGCKVH----KNIKLAEEATRHLSKLDPLNDGYYVVLS 455



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 136/339 (40%), Gaps = 78/339 (23%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +FQ++    ++ WN  +    + +     + L   ++   + P+  T S +    S   +
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII------- 242
           ++ GK +HGY  K     N+++   I+  YA  G +  A++VFD+   R +I        
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 243 ------------------------WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
                                   WT++I  YA  G + +A+ LF EM + G+ P+ VT 
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 279 TAVLSACA-----------------------------------HSGLVDKAWDIFNAMSG 303
            AVL ACA                                     G ++ A  IF+ M  
Sbjct: 249 VAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME- 307

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVE 360
               + +V  ++ M+  L+   R  +A    +KM    VKP+A  +  +L+  S  G VE
Sbjct: 308 ----ERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363

Query: 361 LGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEA 396
            G+     +   + I P    +Y  M +L+S+AG   EA
Sbjct: 364 KGRKYFASMTRDYGIVPR-IEHYGCMVDLFSRAGLLQEA 401



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSW++MIAG +  G  E+  ALF +M+N+ V +P+ VT + +L AC     +  
Sbjct: 306 MEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGV-KPNAVTFIGILHACSHMGMVEK 364

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G +    +   +    +++ + C  ++ ++++ G L  A   +  M    + V + A++ 
Sbjct: 365 GRKYFASMTRDYGIVPRIEHYGC--MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGL-VQNNRHEAVLDLVREMQASGVR 171
           G  VH  ++ A +  + + +  P    +  V+S +  +  R E V  + + M+  GV+
Sbjct: 423 GCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVK 480



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L  +F++    K++H + +K     +    + +    A       A+ +F       +  
Sbjct: 21  LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTH 80

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAM 301
           W   + ++A     + A+SLF  +    I PD  T + VL AC  S L+D +   I +  
Sbjct: 81  WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC--SRLLDVRNGKIVHGY 138

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             + G+Q ++     +V + +    I  A +   KMP +     W  ++      GD E 
Sbjct: 139 VEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQR-DVITWNIMIARLVKMGDAE- 196

Query: 362 GKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G +    LF   PE N  ++  M   Y+Q G+  EA  +  +M+++GL
Sbjct: 197 GAY---KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL 241


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 268/455 (58%), Gaps = 33/455 (7%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M ++ +VSW S+IA Y + G Y++   LF EM  S  + PD  ++ SVL AC   + +  
Sbjct: 715  MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM-ESKGVSPDVYSMTSVLHACACGNSLDK 773

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G +VHN++ ++++ + L + NAL+ MYAKCGS++ A  +  ++  KD VS          
Sbjct: 774  GRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVS---------- 823

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 WN +I G  +N+     L L  EMQ    RP+ +T++ +
Sbjct: 824  ---------------------WNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACL 861

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   + L+ G+ IHG  ++N Y   ++VA A+ID Y K G L  A+ +FD    + L
Sbjct: 862  LPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDL 921

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            I WT +IS    HG  ++A++ F +M   GI+PD +TFT++L AC+HSGL+++ W  FN+
Sbjct: 922  ITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNS 981

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            M  +  ++P +EHYACMV +L+R   +S+A   +  MP+KP A +WGALL G  I  DVE
Sbjct: 982  MISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVE 1041

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            L + V +H+FE+EP+N G Y+++AN+Y++A +W+E  ++RE++ + GL K PG SWIE  
Sbjct: 1042 LAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQ 1101

Query: 421  GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            G   +FV+ DT+  +++ I+ +L  L   M+ EG+
Sbjct: 1102 GKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGH 1136



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 193/441 (43%), Gaps = 74/441 (16%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP--DGVTVVSVLQACGQSSDI 58
            +  RD+VSWNSMI+G    GF       F +ML   +LR   D  T+V+ + AC     +
Sbjct: 614  LGDRDVVSWNSMISGCVMNGFSHSALEFFVQML---ILRVGVDLATLVNSVAACANVGSL 670

Query: 59   VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
              G  +H   +++    ++   N L+ MY+KCG+L+ A    ++M  K  VS++++I+ Y
Sbjct: 671  SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAY 730

Query: 119  MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            +  G  + A+ LF                                EM++ GV P+  +++
Sbjct: 731  VREGLYDDAIRLFY-------------------------------EMESKGVSPDVYSMT 759

Query: 179  SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S+    +  ++L  G+++H Y  KN     + V+ A++D YAK G +  A  VF +   +
Sbjct: 760  SVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK 819

Query: 239  SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------H 287
             ++ W  +I  Y+ +   ++A+ LF EM     +PD +T   +L AC            H
Sbjct: 820  DIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIH 878

Query: 288  SGLVDKAWD----IFNAMSGQYGIQPSVEHYACMVGVLSRARRIS--------------- 328
              ++   +     + NA+   Y    S+ H   +  ++     I+               
Sbjct: 879  GCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGN 938

Query: 329  EATEFVSKMP---VKPSAKVWGALLYGASISGDVELG-KFVCDHLFE--IEPENTGNYII 382
            EA     KM    +KP    + ++LY  S SG +  G  F    + E  +EP+   +Y  
Sbjct: 939  EAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPK-LEHYAC 997

Query: 383  MANLYSQAGRWDEADRVREQM 403
            M +L ++ G   +A  + E M
Sbjct: 998  MVDLLARTGNLSKAYNLIETM 1018



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 37/391 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S   +  WN M++ Y++ G Y E   LF++M    +   +  T   +L+       +  
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGI-TGNSYTFSCILKCFATLGRVGE 571

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H  V +        + N+LI  Y K G +D A  L DE+ D+D VS++++ISG ++
Sbjct: 572 CKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVM 631

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF   A++ F                                +M    V  +  T+ + 
Sbjct: 632 NGFSHSALEFFV-------------------------------QMLILRVGVDLATLVNS 660

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  ++  +L  G+ +HG  VK  + R +     ++D Y+K G L+ A + F++   +++
Sbjct: 661 VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+AY   G    A+ LF EM + G+ PD  + T+VL ACA    +DK  D+ N 
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY 780

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  +  +   +     ++ + ++   + EA    S++PVK     W  ++ G S +    
Sbjct: 781 IR-KNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVS-WNTMIGGYSKNS--- 835

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
           L         E++ E+  + I MA L    G
Sbjct: 836 LPNEALKLFAEMQKESRPDGITMACLLPACG 866



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 132/309 (42%), Gaps = 42/309 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE-MSD 105
           S+LQ C +   +  G  VH+ +  + I ++  +   L+ MY  CG+L   R + D  +SD
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSD 515

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                ++ ++S Y   G   +++ LF                               ++M
Sbjct: 516 NKVFLWNLMMSEYAKIGDYRESIYLF-------------------------------KKM 544

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q  G+  N+ T S I   F+    +   K IHG   K  +     V  ++I TY K+G +
Sbjct: 545 QKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEV 604

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A ++FD    R ++ W ++IS    +G +  A+  F +ML   +  D  T    ++AC
Sbjct: 605 DSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAAC 664

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           A+ G    +  +  A+ GQ G++      V     ++ + S+   +++A +   KM  K 
Sbjct: 665 ANVG----SLSLGRALHGQ-GVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT 719

Query: 342 SAKVWGALL 350
               W +L+
Sbjct: 720 VVS-WTSLI 727



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           ++L+R  Q S +  NA   SSI  L +    L+ GK +H     N       +   ++  
Sbjct: 438 VELLRMSQKSELDLNAY--SSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFM 495

Query: 219 YAKTGFLHGAQRVFDR-FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
           Y   G L   +R+FD       + +W  ++S YA  GD  +++ LF +M   GI  +  T
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555

Query: 278 FTAVLSACAHSGLV 291
           F+ +L   A  G V
Sbjct: 556 FSCILKCFATLGRV 569


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/470 (37%), Positives = 265/470 (56%), Gaps = 37/470 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++IAG++Q G Y E   + REM  +  L+PD  T+ S+L    +  D+  
Sbjct: 186 MPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNK 245

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + + +    D++I ++LI MYAKC  L                           
Sbjct: 246 GKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRL--------------------------- 278

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E ++  F ++ R    +WN++I+G VQN   +  L   R M    V+P AV+ SS+
Sbjct: 279 ----ECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSV 334

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  G+++HG  V+  +D N ++A++++D YAK G +  A+ VFDR   R +
Sbjct: 335 IPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDM 394

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTAII   A HG A  AVSLF  ML +G++P  V F AVL+AC+H+GLVD+ W  FN+
Sbjct: 395 VAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNS 454

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDV 359
           M   +GI P +EHYA +  +L RA R+ EA +F+S M  V+P+  VW  LL        V
Sbjct: 455 MERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSV 514

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL + V D L  ++ EN G Y++M+N+YS A RW +A R+R  M++ GL K P  SWIE 
Sbjct: 515 ELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEV 574

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL-----LDEVEEE 464
              + +F+A D S    ++I   L+ LL  M +EGYV+     L +V+EE
Sbjct: 575 GNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEE 624



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 48/296 (16%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +W+S+I  Y+         + F  M  S  + P+     S+L+A            +H  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSM-RSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHAC 135

Query: 68  VIESHIKMDLWICNALIGMYAKCGS---------------LDYARALLDEMSDKDEVSYS 112
            +   +  DL+I NALI  YAK  +               +D  + + D M  +D VS++
Sbjct: 136 TVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWN 195

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VR 171
            +I+G+                                QN  +   LD+VREM  +G ++
Sbjct: 196 TVIAGF-------------------------------AQNGMYVEALDMVREMGKNGKLK 224

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P++ T+SSI  +F+   ++  GKEIHGYAV+N +D ++++ +++ID YAK   L  + R 
Sbjct: 225 PDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRA 284

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           F     +  I W +II+    +G+  + +  F  ML   ++P  V+F++V+ ACAH
Sbjct: 285 FYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAH 340



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 24/240 (10%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           W+++I     ++           M++  V PN     S+    +   + K    +H   V
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------------------RSLIIW 243
           +   D ++Y+A A+I+TYAK    H A +VFD F                    R ++ W
Sbjct: 138 RLGLDSDLYIANALINTYAK---FHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSW 194

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
             +I+ +A +G   +A+ +  EM  NG ++PD  T +++L   A    V+K  +I +  +
Sbjct: 195 NTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEI-HGYA 253

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            + G    V   + ++ + ++  R+  +      +P K  A  W +++ G   +G+ + G
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK-DAISWNSIIAGCVQNGEFDRG 312


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/472 (36%), Positives = 280/472 (59%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDIVSWNSMI+GYSQ G+  E  A+F +MLN P L+PD  T+ S+L AC     +  
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G ++H +++ +  +    + NALI MYAK G ++ AR +++    S+ + +++++++ GY
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G V+ A ++F  ++   +  W A+I G VQN      L+L R M   G  PN+ T++
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLA 413

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S+ S  + L+ GK+IH  A+K        V  A+I  YAKTG ++ A+RVFD   G+
Sbjct: 414 AMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGK 473

Query: 239 SLII-WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
             I+ WT++I A A HG   +A++LF  ML+ G++PD +T+  VLSAC H GLV++    
Sbjct: 474 KEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKY 533

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +N M+  + I+P++ HYACM+ +  RA  + EA  F+  MP++P    WG+LL    I  
Sbjct: 534 YNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHK 593

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + +L K   + L  I+P N+G Y+ +AN+YS  G+W+ A + R+ MK+ G+ K  G SWI
Sbjct: 594 NADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWI 653

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                + +F  +D    + ++IY ++  +   +++ G++     +L ++EEE
Sbjct: 654 HIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEE 705



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 218/475 (45%), Gaps = 75/475 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D VSW ++I GY+Q G ++    +F +M++  V  P   TV +VL +C  +  +  
Sbjct: 102 MPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERV-PPSQFTVSNVLSSCAANQTLDI 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+FV++  +   + +  +L+ MYAKCG    A+ + D M+ K+  +++A+IS YM 
Sbjct: 161 GRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQ 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISS 179
            G  E A   F+ M    + +WN++ISG  Q   + EA+    + +    ++P+  T++S
Sbjct: 221 SGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLAS 280

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK--------------------------------NRY-D 206
           I S  ++   L  GK+IH Y ++                                NR  +
Sbjct: 281 ILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSN 340

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            NI   T+++D Y K G +  A+ +F++ + R ++ WTA+I  Y  +G  + A+ LF  M
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-NAMSGQYGIQPSVEH-----YACMVGV 320
           +N G +P+  T  A+LS  +   +++    I  +A+       PSV +     YA   G 
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYA-KTGN 459

Query: 321 LSRARRI--------------------------SEATEFVSKM---PVKPSAKVWGALLY 351
           ++ A+R+                           EA     +M    +KP    +  +L 
Sbjct: 460 INVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 352 GASISGDVELGK---FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             +  G VE G+    +   + EIEP    +Y  M +LY +AG   EA    E M
Sbjct: 520 ACTHVGLVEQGRKYYNMMTEVHEIEP-TLSHYACMIDLYGRAGLLQEAYLFIESM 573



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 158/324 (48%), Gaps = 7/324 (2%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +LQ   +  D   G  VH  +I+  + + +++ N L+  YAK GSL +A  + DEM  K 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++ +ISGY   G  E +  L   M      +W A+I G  Q    +  + +  +M +
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
             V P+  T+S++ S  +    L  G++IH + VK      + VAT++++ YAK G    
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+ VFDR   +++  W A+IS Y   G    A S F +M +     D V++ +++S  + 
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISGYSQ 251

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMPVKPSAK 344
            G   +A  IF+ M  +  ++P     A ++   +   +++   +   ++ +   + S  
Sbjct: 252 QGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 345 VWGALLYGASISGDVELGKFVCDH 368
           V  AL+   + SG VE+ + + +H
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEH 335


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 271/453 (59%), Gaps = 6/453 (1%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RD +SWN MI+G+     +++   LFR++L   +  PD  T+ S+L      + I  G 
Sbjct: 368 ERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGI-EPDSFTLGSILTGFADMTCIRQGK 426

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H+  I   ++ + ++  AL+ MY KC  +  A+   DE+S++D  +++A+ISGY    
Sbjct: 427 EIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCN 486

Query: 123 FVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            + K  +L + MK     P + TWN++++GLV+N +++  + L  EMQ S +RP+  T+ 
Sbjct: 487 QIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVG 546

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            I +  S  + +  GK++H Y+++  YD + ++   ++D YAK G +    +V+++    
Sbjct: 547 IILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNP 606

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L+   A+++AYA HG   + + +F  ML++ ++PD VTF +VLS+C H+G +   ++ F
Sbjct: 607 NLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECF 666

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   Y I P+++HY CMV +LSRA ++ EA + +  MP++  +  W ALL G  I  +
Sbjct: 667 YLME-TYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKE 725

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V LG+   + L E+EP NTGNY+++ANLY+ AGRW +  + RE M + G+ K PG SWIE
Sbjct: 726 VALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIE 785

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
              G+  F+A D S  + E+IY +L+ L   +R
Sbjct: 786 DRDGVHIFLASDKSHQRVEEIYFMLDNLTKFIR 818



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 205/416 (49%), Gaps = 12/416 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M+ +++ SW +++  +   G + +   LF E L   +  + D      VL  C    D+ 
Sbjct: 92  MTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLE 151

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G +VH  V++     ++++ NALI MY KCGSLD A+ +L+ M+ KD VS+++II+  +
Sbjct: 152 LGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACV 211

Query: 120 VHGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            +G V +A+DL + M      P + TW+AVI G   N      ++L   M  +GV P+A 
Sbjct: 212 ANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDAR 271

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T++S+    S    L  GKE+HGY V++    N +VA A++  Y + G +  A ++F +F
Sbjct: 272 TLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKF 331

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             +    +  +I  Y  +G+  KA  LF +M   G++ D +++  ++S    + + D A 
Sbjct: 332 ARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDAL 391

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALLYG 352
            +F  +  + GI+P       ++   +    I +  E  S   VK    ++ V GAL+  
Sbjct: 392 MLFRDLLME-GIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEM 450

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
                D+   +   D   EI   +T  +  + + Y++  +  +   + E+MK  G 
Sbjct: 451 YCKCNDIIAAQMAFD---EISERDTSTWNALISGYARCNQIGKIRELVERMKSDGF 503



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++V  N+M+  Y+  G  EE   +FR ML+S V RPD VT +SVL +C  +  I  
Sbjct: 603 ISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRV-RPDHVTFLSVLSSCVHAGSIKI 661

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYM 119
           G E    +   +I   L     ++ + ++ G LD A  L+  M  + D V++SA++ G  
Sbjct: 662 GYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCF 721

Query: 120 VH 121
           +H
Sbjct: 722 IH 723



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 7/202 (3%)

Query: 178 SSIFSLFSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           S+ +S     SN L  GK++H +++K  +  + +V T ++  Y+       A  +FD+  
Sbjct: 34  STTYSTILQSSNSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMT 93

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI--QPDPVTFTAVLSACAHSGLVDKA 294
            ++L  WTA++  +   G   K   LF E L +G+  + D   F  VL+ C   G ++  
Sbjct: 94  LKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELG 153

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             + + M  ++G   +V     ++ +  +   + EA + +  M  K     W +++    
Sbjct: 154 RQV-HGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVS-WNSIITACV 211

Query: 355 ISGDVELGKFVCDHLF--EIEP 374
            +G V     + +++   E+EP
Sbjct: 212 ANGVVYEALDLLENMLLSELEP 233


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 264/458 (57%), Gaps = 34/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW +MI+GYSQ G+  E   LF EML S    P+  T  +VL +C  SS    
Sbjct: 71  MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA-PNEFTFATVLTSCTSSSGFQL 129

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ VI++  +  +++ ++L+ MYAK G +  AR + D + ++D VS +AIISGY  
Sbjct: 130 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 189

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+A                               LDL R +Q  G+R N VT +S+
Sbjct: 190 LGLDEEA-------------------------------LDLFRRLQREGMRSNYVTYASV 218

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  G+++H + ++ +    + +  ++ID Y+K G L  ++R+FD    R++
Sbjct: 219 LTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTV 278

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W A++  Y+ HG   +AV LF  M   N ++PD VTF AVLS C+H G+ D+  +IF 
Sbjct: 279 ISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFY 338

Query: 300 AMSGQY-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            M  Q  G +P +EHY C+V +  RA R+ EA EF+ KMP +P+A +WG+LL    +  +
Sbjct: 339 EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQN 398

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V +G+FV   L EIE EN GNY+I++NLY+ AGRWD+   VRE MKE  + K PGRSWIE
Sbjct: 399 VHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 458

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               L +F A D S  + E+++  +  L   ++E GYV
Sbjct: 459 LDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV 496



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 175/405 (43%), Gaps = 70/405 (17%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           SVL  C   + I  G  VH  +I++  +  +++   LI +Y KC  L  AR +LDEM ++
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS                               W A+ISG  Q       L L  EM 
Sbjct: 75  NVVS-------------------------------WTAMISGYSQRGYASEALHLFVEML 103

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            SG  PN  T +++ +  +  S  + G++IH   +K  ++ +I+V ++++D YAK G + 
Sbjct: 104 MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKIC 163

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+RVFD    R ++  TAIIS YA  G   +A+ LF  +   G++ + VT+ +VL+A +
Sbjct: 164 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS 223

Query: 287 HSGLVDKAWDIFN-----AMSGQYGIQPSVEHYACMVGVLSRARRI-------------- 327
               +D    + +      +     +Q S+       G L+ +RRI              
Sbjct: 224 GLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNA 283

Query: 328 -----------SEATEFVSKM----PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE- 371
                       EA E    M     VKP +  + A+L G S  G  + G  +   +   
Sbjct: 284 MLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQ 343

Query: 372 ---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
               EPE   +Y  + +L+ +AGR +EA    ++M     A I G
Sbjct: 344 KDGFEPE-IEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWG 387


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 284/506 (56%), Gaps = 43/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+++ +N MI  Y     Y++   +FR+M+ S    PD  T   VL+AC  S ++  
Sbjct: 93  IPERNVIFYNVMIRSYMNNHLYDDALLVFRDMV-SGGFSPDHYTYPCVLKACSCSDNLRI 151

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  V +  + ++L++ N LI +Y KCG L  AR +LDEM  KD VS++++++GY  
Sbjct: 152 GLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQ 211

Query: 121 HGFVEKAMD-------------------------------------LFQVMKRPGLSTWN 143
           +   + A+D                                     +F  +++  L +WN
Sbjct: 212 NMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWN 271

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +IS  ++N+     +DL  +M    V P+A+T +S+       S L  G+ IH Y  + 
Sbjct: 272 VMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERK 331

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  ++ID YA+ G L  A+RVFDR K R +  WT++ISAY   G    AV+LF
Sbjct: 332 KLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALF 391

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            EM N+G  PD + F A+LSAC+HSGL+++    F  M+  Y I P +EH+AC+V +L R
Sbjct: 392 TEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGR 451

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           + R+ EA   + +MP+KP+ +VWGALL    +  ++++G    D L ++ PE +G Y+++
Sbjct: 452 SGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLL 511

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW E   +R  MK   + K+PG S +E +  + +F+A DT   +S++IY  L
Sbjct: 512 SNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEEL 571

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
             L+G M+E GYV      L +VEEE
Sbjct: 572 SVLVGKMKELGYVPKTDSALHDVEEE 597



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 29/306 (9%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           ++  Y   G    A ++F V+    +  +N +I   + N+ ++  L + R+M + G  P+
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +    S   NL+ G ++HG   K   D N++V   +I  Y K G L  A+ V D
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             + + ++ W ++++ YA +     A+ +  EM     +PD  T  ++L A  ++   + 
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 294 AW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWG- 347
            +  ++F  +  +     S+  +  M+ V  +     ++ +    + K  V+P A     
Sbjct: 253 LYVEEMFMNLEKK-----SLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCAS 307

Query: 348 ---------ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398
                    ALL G  I   VE  K   + L E       N +I  ++Y++ G  ++A R
Sbjct: 308 VLRACGDLSALLLGRRIHEYVERKKLCPNMLLE-------NSLI--DMYARCGCLEDAKR 358

Query: 399 VREQMK 404
           V ++MK
Sbjct: 359 VFDRMK 364



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 2/130 (1%)

Query: 161 LVREMQASGVRP-NAVTISSIF-SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           LV  ++ S V P N V +  +   +   + ++K  K +H       +  N  +   ++  
Sbjct: 17  LVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRA 76

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           YA  G    A+ VFD    R++I +  +I +Y  +     A+ +F +M++ G  PD  T+
Sbjct: 77  YAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTY 136

Query: 279 TAVLSACAHS 288
             VL AC+ S
Sbjct: 137 PCVLKACSCS 146


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 264/458 (57%), Gaps = 34/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW +MI+GYSQ G+  E   LF EML S    P+  T  +VL +C  SS    
Sbjct: 538 MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA-PNEFTFATVLTSCTSSSGFQL 596

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ VI++  +  +++ ++L+ MYAK G +  AR + D + ++D VS +AIISGY  
Sbjct: 597 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 656

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+A                               LDL R +Q  G+R N VT +S+
Sbjct: 657 LGLDEEA-------------------------------LDLFRRLQREGMRSNYVTYASV 685

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  G+++H + ++ +    + +  ++ID Y+K G L  ++R+FD    R++
Sbjct: 686 LTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTV 745

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W A++  Y+ HG   +AV LF  M   N ++PD VTF AVLS C+H G+ D+  +IF 
Sbjct: 746 ISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFY 805

Query: 300 AMSGQY-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            M  Q  G +P +EHY C+V +  RA R+ EA EF+ KMP +P+A +WG+LL    +  +
Sbjct: 806 EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQN 865

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V +G+FV   L EIE EN GNY+I++NLY+ AGRWD+   VRE MKE  + K PGRSWIE
Sbjct: 866 VHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 925

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               L +F A D S  + E+++  +  L   ++E GYV
Sbjct: 926 LDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV 963



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 175/405 (43%), Gaps = 70/405 (17%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           SVL  C   + I  G  VH  +I++  +  +++   LI +Y KC  L  AR +LDEM ++
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS                               W A+ISG  Q       L L  EM 
Sbjct: 542 NVVS-------------------------------WTAMISGYSQRGYASEALHLFVEML 570

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            SG  PN  T +++ +  +  S  + G++IH   +K  ++ +I+V ++++D YAK G + 
Sbjct: 571 MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKIC 630

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+RVFD    R ++  TAIIS YA  G   +A+ LF  +   G++ + VT+ +VL+A +
Sbjct: 631 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS 690

Query: 287 HSGLVDKAWDIFN-----AMSGQYGIQPSVEHYACMVGVLSRARRI-------------- 327
               +D    + +      +     +Q S+       G L+ +RRI              
Sbjct: 691 GLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNA 750

Query: 328 -----------SEATEFVSKM----PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE- 371
                       EA E    M     VKP +  + A+L G S  G  + G  +   +   
Sbjct: 751 MLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQ 810

Query: 372 ---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
               EPE   +Y  + +L+ +AGR +EA    ++M     A I G
Sbjct: 811 KDGFEPE-IEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWG 854



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 18/285 (6%)

Query: 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK 194
           +R  LST+ A    L     +  + + + EM   G+        S+ +     + ++ G+
Sbjct: 438 QRILLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQ 497

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
            +H + +K  Y+  +Y+ T +I  Y K   L  A+RV D    R+++ WTA+IS Y+  G
Sbjct: 498 RVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRG 557

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
            AS+A+ LF EML +G  P+  TF  VL++C  S        I + +     I+ S E +
Sbjct: 558 YASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLV-----IKTSFESH 612

Query: 315 ----ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG--KFVCDH 368
               + ++ + ++A +I EA      +P +            A ISG  +LG  +   D 
Sbjct: 613 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC------TAIISGYAQLGLDEEALDL 666

Query: 369 LFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
              ++ E    NY+  A++ +        D  R+       AK+P
Sbjct: 667 FRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 711


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 165/435 (37%), Positives = 251/435 (57%), Gaps = 32/435 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI++WN ++ G++Q G  +     F+ M +S  + P+  T+   L ACGQ  ++  G E+
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEI 521

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +V+ +HI++   + +ALI MY+ C SL+ A ++  E+S +D V               
Sbjct: 522 HGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV--------------- 566

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++IS   Q+ R    LDL+REM  S V  N VT+ S     
Sbjct: 567 ----------------VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 610

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S  + L+ GKEIH + ++   D   ++  ++ID Y + G +  ++R+FD    R L+ W 
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 670

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS Y  HG    AV+LF      G++P+ +TFT +LSAC+HSGL+++ W  F  M  +
Sbjct: 671 VMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y + P+VE YACMV +LSRA + +E  EF+ KMP +P+A VWG+LL    I  + +L ++
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 790

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              +LFE+EP+++GNY++MAN+YS AGRW++A ++R  MKE G+ K PG SWIE    L 
Sbjct: 791 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850

Query: 425 SFVAKDTSGDKSEQI 439
           SFV  DTS    EQI
Sbjct: 851 SFVVGDTSHPLMEQI 865



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 209/446 (46%), Gaps = 50/446 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++ SW +++  Y   G YEE   LF  M+N  V RPD      V +AC +  +   
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFPKVFKACSELKNYRV 208

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V+++++    + +  +  +++ M+ KCG +D AR   +E+  KD   ++ ++SGY  
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAV------------------ 158
            G  +KA+     MK    +P   TWNA+ISG  Q+ + E                    
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 159 ------------------LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
                             L + R+M   GV+PN++TI+S  S  ++ S L+ G+EIHGY 
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 201 VK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           +K    D ++ V  +++D YAK   +  A+R F   K   L+ W A+++ YA  G   +A
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           + L +EM   GI+PD +T+  +++     G    A + F  M    G+ P+    +  + 
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTTISGALA 507

Query: 320 VLSRARRISEATE---FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
              + R +    E   +V +  ++ S  V  AL+   S    +E+    C    E+   +
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVA---CSVFSELSTRD 564

Query: 377 TGNYIIMANLYSQAGRWDEA-DRVRE 401
              +  + +  +Q+GR   A D +RE
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLRE 590



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 39/348 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFRE--MLNS-PVLRPDGVTVV--SVLQACGQSSDI 58
           R + +    I G+S GG       L     +L+S  +  PD    +  S+LQ C +  ++
Sbjct: 46  RKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNL 105

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G +VH  ++ + + +  ++ + L+ +Y + G ++ AR + D+MS+++  S++AI+  Y
Sbjct: 106 RLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMY 165

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G  E+ + LF +M                           V E    GVRP+     
Sbjct: 166 CGLGDYEETIKLFYLM---------------------------VNE----GVRPDHFVFP 194

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +F   S   N + GK+++ Y +   ++ N  V  +I+D + K G +  A+R F+  + +
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + +W  ++S Y + G+  KA+   ++M  +G++PD VT+ A++S  A SG  ++A   F
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSA 343
             M G    +P+V  +  ++    +     EA     KM    VKP++
Sbjct: 315 LEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 17/234 (7%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +SI        NL+ G ++H   V N  D   ++ + +++ Y +TG +  A+R+FD+   
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R++  WTAI+  Y   GD  + + LF  M+N G++PD   F  V  AC+         D+
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 298 FNAM-----SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           ++ M      G   ++ S+       G +  ARR  E  EF           +W  ++ G
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF-------KDVFMWNIMVSG 265

Query: 353 ASISGDVELG-KFVCD-HLFEIEPEN-TGNYIIMANLYSQAGRWDEADRVREQM 403
            +  G+ +   K + D  L  ++P+  T N II    Y+Q+G+++EA +   +M
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG--YAQSGQFEEASKYFLEM 317


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 169/472 (35%), Positives = 279/472 (59%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDIVSWNSMI+GYSQ G+  E   +F +MLN P L+PD  T+ S+L AC     +  
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G ++H +++ +  +    + NALI MYAK G ++ AR +++    S+ + +++++++ GY
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G V+ A ++F  ++   +  W A+I G VQN      L+L R M   G  PN+ T++
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLA 413

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S+ S  + L+ GK+IH  A+K        V  A+I  YAKTG ++ A+RVFD   G+
Sbjct: 414 AMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGK 473

Query: 239 SLII-WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
             I+ WT++I A A HG   +A++LF  ML+ G++PD +T+  VLSAC H GLV++    
Sbjct: 474 KEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKY 533

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +N M+  + I+P++ HYACM+ +  RA  + EA  F+  MP++P    WG+LL    I  
Sbjct: 534 YNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHK 593

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + +L K   + L  I+P N+G Y+ +AN+YS  G+W+ A + R+ MK+ G+ K  G SWI
Sbjct: 594 NADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWI 653

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                + +F  +D    + ++IY ++  +   +++ G++     +L ++EEE
Sbjct: 654 HIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEE 705



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 219/475 (46%), Gaps = 75/475 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D VSW ++I GY+Q G ++    +F +M++  V  P   TV +VL +C  +  +  
Sbjct: 102 MPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERV-PPSQFTVSNVLSSCAANQTLDI 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+FV++  +   + +  +L+ MYAKCG    A+ + D M+ K+  +++A+IS YM 
Sbjct: 161 GRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQ 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISS 179
            G  E A   F+ M    + +WN++ISG  Q   + EA++   + +    ++P+  T++S
Sbjct: 221 SGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLAS 280

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK--------------------------------NRY-D 206
           I S  ++   L  GK+IH Y ++                                NR  +
Sbjct: 281 ILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSN 340

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            NI   T+++D Y K G +  A+ +F++ + R ++ WTA+I  Y  +G  + A+ LF  M
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-NAMSGQYGIQPSVEH-----YACMVGV 320
           +N G +P+  T  A+LS  +   +++    I  +A+       PSV +     YA   G 
Sbjct: 401 VNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYA-KTGN 459

Query: 321 LSRARRI--------------------------SEATEFVSKM---PVKPSAKVWGALLY 351
           ++ A+R+                           EA     +M    +KP    +  +L 
Sbjct: 460 INVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 352 GASISGDVELGK---FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             +  G VE G+    +   + EIEP    +Y  M +LY +AG   EA    E M
Sbjct: 520 ACTHVGLVEQGRKYYNMMTEVHEIEP-TLSHYACMIDLYGRAGLLQEAYLFIESM 573



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 158/324 (48%), Gaps = 7/324 (2%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +LQ   +  D   G  VH  +I+  + + +++ N L+  YAK GSL +A  + DEM  K 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++ +ISGY   G  E +  L   M      +W A+I G  Q    +  + +  +M +
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
             V P+  T+S++ S  +    L  G++IH + VK      + VAT++++ YAK G    
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+ VFDR   +++  W A+IS Y   G    A S F +M +     D V++ +++S  + 
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISGYSQ 251

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMPVKPSAK 344
            G   +A  IF+ M  +  ++P     A ++   +   +++   +   ++ +   + S  
Sbjct: 252 QGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 345 VWGALLYGASISGDVELGKFVCDH 368
           V  AL+   + SG VE+ + + +H
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEH 335


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 268/459 (58%), Gaps = 1/459 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWN +I GY + G  E+   +++ ++ S  ++PD VT++ ++ +C    D+  G E
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYK-LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKE 278

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            + +V E+ ++M + + NAL+ M++KCG +  AR + D +  +  VS++ +ISGY   G 
Sbjct: 279 FYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGL 338

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ +  LF  M+   +  WNA+I G VQ  R +  L L +EMQ S  +P+ +T+    S 
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  IH Y  K     N+ + T+++D YAK G +  A  VF   + R+ + +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY 458

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAII   A HGDAS A+S FNEM++ GI PD +TF  +LSAC H G++    D F+ M  
Sbjct: 459 TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS 518

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P ++HY+ MV +L RA  + EA   +  MP++  A VWGALL+G  + G+VELG+
Sbjct: 519 RFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGE 578

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E++P ++G Y+++  +Y +A  W++A R R  M E G+ KIPG S IE +G +
Sbjct: 579 KAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 638

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
             F+ +D S  +SE+IY  L  L   MR    VL  E E
Sbjct: 639 CEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLFSEYE 677



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 205/484 (42%), Gaps = 101/484 (20%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLQACGQSSDIVFGM 62
           +I SWN  I G+S+    +E   L+++ML       RPD  T   + + C        G 
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +   V++  +++   + NA I M+A CG ++ AR + DE   +D VS++ +I+GY   G
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             EKA+ ++++                               M++ GV+P+ VT+  + S
Sbjct: 237 EAEKAIYVYKL-------------------------------MESEGVKPDDVTMIGLVS 265

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S   +L  GKE + Y  +N     I +  A++D ++K G +H A+R+FD  + R+++ 
Sbjct: 266 SCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVS 325

Query: 243 WTAIISAYAAHG--DASK-----------------------------AVSLFNEMLNNGI 271
           WT +IS YA  G  D S+                             A++LF EM  +  
Sbjct: 326 WTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT 385

Query: 272 QPDPVTFTAVLSACAHSGLVD-----------------------------KAWDIFNAMS 302
           +PD +T    LSAC+  G +D                             K  +I  A+S
Sbjct: 386 KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALS 445

Query: 303 GQYGIQPSVE-HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGD 358
             +GIQ      Y  ++G L+     S A  + ++M    + P    +  LL      G 
Sbjct: 446 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
           ++ G+     +   F + P+   +Y IM +L  +AG  +EADR+ E M     A + G  
Sbjct: 506 IQTGRDYFSQMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGAL 564

Query: 416 WIEC 419
              C
Sbjct: 565 LFGC 568



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 161/346 (46%), Gaps = 12/346 (3%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H+FV+ + +   L  C  L+ +      +     +LD  +    +++ A+        +
Sbjct: 47  THSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESR----Y 102

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV---RPNAVTISSI 180
           ++ ++ + + ++ P + +WN  I G  ++   +    L ++M   G    RP+  T   +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F + +       G  I G+ +K R +   +V  A I  +A  G +  A++VFD    R L
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y   G+A KA+ ++  M + G++PD VT   ++S+C+  G +++  + +  
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  + G++ ++     ++ + S+   I EA      +  K +   W  ++ G +  G ++
Sbjct: 283 VK-ENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISGYARCGLLD 340

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           + + + D   ++E ++   +  M     QA R  +A  + ++M+ S
Sbjct: 341 VSRKLFD---DMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTS 383



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 65/288 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---------------------- 38
           + KR IVSW +MI+GY++ G  +  + LF +M    V+                      
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                   +PD +T++  L AC Q   +  G+ +H ++ +  + +++ +  +L+ MYAKC
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G++  A ++   +  ++ ++Y+AII G  +HG    A+  F                   
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFN------------------ 479

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                        EM  +G+ P+ +T   + S   H   ++ G++     +K+R++ N  
Sbjct: 480 -------------EMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS-QMKSRFNLNPQ 525

Query: 211 VA--TAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD 255
           +   + ++D   + G L  A R+ +     +   +W A++     HG+
Sbjct: 526 LKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGN 573


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 298/524 (56%), Gaps = 59/524 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD++SWNSMI+GY   G  E    ++++M+   +   D  T++SVL  C  S  +  
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCANSGTLSL 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  I+S  +  +   N L+ MY+KCG LD A  + ++M +++ VS++++I+GY  
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ--------------------NNRH----- 155
            G  + A+ L Q M++ G+      I+ ++                     NN       
Sbjct: 330 DGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 156 -EAVLDLVRE---MQASG--------------------VRPNAVTISSIFSLFSHFSNLK 191
             A++D+  +   M+A+                     ++P++ T++ +    +  S L+
Sbjct: 390 CNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALE 449

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GKEIHGY ++N Y  + +VA A++D Y K G L  A+ +FD    + L+ WT +I+ Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            HG  ++A++ FNEM + GI+PD V+F ++L AC+HSGL+++ W  F  M   + I+P +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
           EHYACMV +LSR   +S+A EF+  +P+ P A +WGALL G     D+EL + V + +FE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFE 629

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA-KD 430
           +EPENTG Y+++AN+Y++A +W+E  R+RE++ + GL K PG SWIE  G +  FV+  +
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNN 689

Query: 431 TSGDKSEQIYLILERLLGLMREEG------YVLL--DEVEEESA 466
           +S   S+ I  +L+++   M+EEG      Y L+  DE+++E A
Sbjct: 690 SSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMA 733



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 154/314 (49%), Gaps = 23/314 (7%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +  +N+ I  + Q G  E    L      S +   +  T  SVLQ C        G +VH
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCQKSEL---ETKTYGSVLQLCAGLKSFTDGKKVH 122

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           + +  + + +D  +   L+  YA CG L   R + D M  K+   ++ ++S Y   G  +
Sbjct: 123 SIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK 182

Query: 126 KAMDLFQVM-------KRP-------------GLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +++ LF++M       KRP              + +WN++ISG V N   E  L + ++M
Sbjct: 183 ESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              G+  +  TI S+    ++   L  GK +H  A+K+ ++R I  +  ++D Y+K G L
Sbjct: 243 MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDL 302

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            GA RVF++   R+++ WT++I+ Y   G +  A+ L  +M   G++ D V  T++L AC
Sbjct: 303 DGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHAC 362

Query: 286 AHSGLVDKAWDIFN 299
           A SG +D   D+ +
Sbjct: 363 ARSGSLDNGKDVHD 376


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 282/472 (59%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RDIV+WNSMI+G++Q G+      +F +ML   +L PD  T+ SVL AC     +  
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYSAIISGY 118
           G ++H+ ++ +   +   + NALI MY++CG ++ AR L+++   KD     ++A++ GY
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G + +A ++F  +K   +  W A+I G  Q+  +   ++L R M   G RPN+ T++
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG- 237
           ++ S+ S  ++L  GK+IHG AVK+    ++ V+ A+I  YAK G +  A R FD  +  
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R  + WT++I A A HG A +A+ LF  ML  G++PD +T+  V SAC H+GLV++    
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F+ M     I P++ HYACMV +  RA  + EA EF+ KMP++P    WG+LL    +  
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +++LGK   + L  +EPEN+G Y  +ANLYS  G+W+EA ++R+ MK+  + K  G SWI
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    +  F  +D +  +  +IY+ ++++   +++ GYV     +L ++EEE
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEE 709



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 215/473 (45%), Gaps = 71/473 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD VSW +MI GY   G Y +   +  +M+   +  P   T+ +VL +   +  +  
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATRCMET 164

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+F+++  ++ ++ + N+L+ MYAKCG    A+ + D M  +D  S++A+I+ +M 
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQ 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
            G ++ AM  F+ M    + TWN++ISG  Q       LD+  +M + S + P+  T++S
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD-------------------------------RN 208
           + S  ++   L  GK+IH + V   +D                               ++
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344

Query: 209 IYVA--TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           + +   TA++D Y K G ++ A+ +F   K R ++ WTA+I  Y  HG   +A++LF  M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404

Query: 267 LNNGIQPDPVTFTAVLSACAHS----------GLVDKAWDIF-----NAMSGQYGIQPSV 311
           +  G +P+  T  A+LS  +            G   K+ +I+     NA+   Y    ++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464

Query: 312 E----------------HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
                             +  M+  L++     EA E    M    ++P    +  +   
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524

Query: 353 ASISGDVELGKFVCDHLFEIEP--ENTGNYIIMANLYSQAGRWDEADRVREQM 403
            + +G V  G+   D + +++       +Y  M +L+ +AG   EA    E+M
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 124/246 (50%), Gaps = 4/246 (1%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  VI+S +   +++ N L+ +Y+K G   +AR L DEM  +   S++ ++S Y   G 
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++   + F  + +    +W  +I G     ++   + ++ +M   G+ P   T++++ + 
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    ++ GK++H + VK     N+ V+ ++++ YAK G    A+ VFDR   R +  W
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I+ +   G    A++ F +M     + D VT+ +++S     G   +A DIF+ M  
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQM----AERDIVTWNSMISGFNQRGYDLRALDIFSKMLR 271

Query: 304 QYGIQP 309
              + P
Sbjct: 272 DSLLSP 277


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 283/469 (60%), Gaps = 10/469 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +IVSWN +++G+++ G+++E   +F++ ++     PD VTV SVL + G S  +  G  +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +VI+  +  D  + +A+I MY K G +    +L ++    +    +A I+G   +G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +KA+++F++ K   +     +W ++I+G  QN +    L+L REMQ +GV+PN VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                + + L  G+  HG+AV+     N++V +A+ID YAK G ++ +Q VF+    ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++ ++ HG A + +S+F  ++   ++PD ++FT++LSAC   GL D+ W  F  
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+P +EHY+CMV +L RA ++ EA + + +MP +P + VWGALL    +  +V+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LF +EPEN G Y++++N+Y+  G W E D +R +M+  GL K PG SWI+  
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
             + + +A D S  + +QI   ++ +   MR+ G+       L +VEE+
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 189/394 (47%), Gaps = 42/394 (10%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I S++S+I   ++   + +   +F  M +  ++ PD   + ++ + C + S    G ++H
Sbjct: 81  IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCAELSAFKVGKQIH 139

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                S + MD ++  ++  MY +CG +  AR + D MSDKD V+ SA++  Y   G +E
Sbjct: 140 CVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199

Query: 126 KAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           + + +   M+  G+     +WN ++SG  ++  H+  + + +++   G  P+ VT+SS+ 
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG-------------- 227
                   L  G+ IHGY +K    ++  V +A+ID Y K+G ++G              
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319

Query: 228 -----------------AQRVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEM 266
                            A  +F+ FK +++    + WT+II+  A +G   +A+ LF EM
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
              G++P+ VT  ++L AC +   +       +  + +  +  +V   + ++ + ++  R
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGR 438

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           I+ +    + MP K +   W +L+ G S+ G  +
Sbjct: 439 INLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAK 471



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +AR +L   +  D    + +I+ Y  +     A  + Q +  P + +++++I  L +   
Sbjct: 38  HAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
               + +   M + G+ P++  + ++F + +  S  K GK+IH  +  +  D + +V  +
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +   Y + G +  A++VFDR   + ++  +A++ AYA  G   + V + +EM ++GI+ +
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAM 301
            V++  +LS    SG   +A  +F  +
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKI 243



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++V WNS++ G+S  G  +E  ++F  ++ +  L+PD ++  S+L ACGQ      
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G +    + E + IK  L   + ++ +  + G L  A  L+ EM  + D   + A+++  
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSC 567

Query: 119 MVHGFVEKA 127
            +   V+ A
Sbjct: 568 RLQNNVDLA 576


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 298/524 (56%), Gaps = 59/524 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD++SWNSMI+GY   G  E    ++++M+   +   D  T++SVL  C  S  +  
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCANSGTLSL 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  I+S  +  +   N L+ MY+KCG LD A  + ++M +++ VS++++I+GY  
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ--------------------NNRH----- 155
            G  + A+ L Q M++ G+      I+ ++                     NN       
Sbjct: 330 DGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 156 -EAVLDLVRE---MQASG--------------------VRPNAVTISSIFSLFSHFSNLK 191
             A++D+  +   M+A+                     ++P++ T++ +    +  S L+
Sbjct: 390 CNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALE 449

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GKEIHGY ++N Y  + +VA A++D Y K G L  A+ +FD    + L+ WT +I+ Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            HG  ++A++ FNEM + GI+PD V+F ++L AC+HSGL+++ W  F  M   + I+P +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
           EHYACMV +LSR   +S+A EF+  +P+ P A +WGALL G     D+EL + V + +FE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFE 629

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA-KD 430
           +EPEN+G Y+++AN+Y++A +W+E  R+RE++ + GL K PG SWIE  G +  FV+  +
Sbjct: 630 LEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNN 689

Query: 431 TSGDKSEQIYLILERLLGLMREEG------YVLL--DEVEEESA 466
           +S   S+ I  +L+++   M+EEG      Y L+  DE+++E A
Sbjct: 690 SSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMA 733



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 154/314 (49%), Gaps = 23/314 (7%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +  +N+ I  + Q G  E    L      S +   +  T  SVLQ C        G +VH
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCKKSEL---ETKTYSSVLQLCAGLKSFTDGKKVH 122

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           + +  + + +D  +   L+  YA CG L   R + D M  K+   ++ ++S Y   G  +
Sbjct: 123 SIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK 182

Query: 126 KAMDLFQVM-------KRP-------------GLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +++ LF++M       KRP              + +WN++ISG V N   E  L + ++M
Sbjct: 183 ESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              G+  +  TI S+    ++   L  GK +H  A+K+ ++R I  +  ++D Y+K G L
Sbjct: 243 MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDL 302

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            GA RVF++   R+++ WT++I+ Y   G +  A+ L  +M   G++ D V  T++L AC
Sbjct: 303 DGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHAC 362

Query: 286 AHSGLVDKAWDIFN 299
           A SG +D   D+ +
Sbjct: 363 ARSGSLDNGKDVHD 376



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 119/318 (37%), Gaps = 83/318 (26%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D     Y+A I  +   G +E AM+L  + K+  L T                       
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELICMCKKSELET----------------------- 99

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
                      T SS+  L +   +   GK++H     N    +  +   ++  YA  G 
Sbjct: 100 ----------KTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGD 149

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ------------ 272
           L   +RVFD  + +++ +W  ++S YA  GD  +++ LF  M+  GI+            
Sbjct: 150 LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFD 209

Query: 273 ----PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                D +++ +++S    +GL ++   I+  M    GI   +   A ++ V        
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM-YLGIDVDL---ATIISV-------- 257

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI-IMANLY 387
                                L G + SG + LGK V     +   E   N+   + ++Y
Sbjct: 258 ---------------------LVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMY 296

Query: 388 SQAGRWDEADRVREQMKE 405
           S+ G  D A RV E+M E
Sbjct: 297 SKCGDLDGALRVFEKMGE 314


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/457 (38%), Positives = 271/457 (59%), Gaps = 3/457 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ + +VSWNSMI GY+  G ++E   LFR+M     + PDG T V++L  C QS D+  
Sbjct: 149 ITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM-REWGMEPDGFTFVNLLSVCSQSRDLDL 207

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  VH F IE + +K+D+ + NAL+ MYAKCG+L  A+A+ D   +K+ VS++++IS Y 
Sbjct: 208 GRYVH-FCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYA 266

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            HG +E A  +F  M    + +WN++IS  ++  ++   LDL  +M+ S V P+  T+ S
Sbjct: 267 QHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVS 326

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I +  S   +L  GK+IH Y + N+    + +  ++ID YAK G +  A  +F    G++
Sbjct: 327 ILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKN 386

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+ W  II A A HG   +A+ LF EM  +G  PD +T T +LSAC+HSGLVD     F+
Sbjct: 387 LVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFD 446

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y +   +EHYACMV +L R   + EA E + +MP+KP   VWGALL    I G+V
Sbjct: 447 RMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNV 506

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+GK +   L E+EP + G Y++++N+Y +A RW++  ++R+ M + G+ K    S IE 
Sbjct: 507 EIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEI 566

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G +  F+  D     S  IY +L++L   +R  GY+
Sbjct: 567 DGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRSAGYL 603



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 179/356 (50%), Gaps = 17/356 (4%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I GYS      +   LFR M+ S  L P+  T+  VL+ACG  S     + VH   
Sbjct: 56  YNSLIRGYSNSDDPIDAVLLFRRMICSG-LSPNEFTLPFVLKACGCKSAYWEAVLVHGLA 114

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+  I   +++ NALI +Y  CG +  AR L D+++DK  VS++++I GY   G  ++A 
Sbjct: 115 IKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAF 174

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE----MQASGVRPNAVTISSIFSLF 184
            LF+ M+  G+         L+        LDL R     ++ +GV+ + +  +++  ++
Sbjct: 175 LLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMY 234

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   NL   + I         ++N+   T++I  YA+ G +  A+++FD+  G++++ W 
Sbjct: 235 AKCGNLHSAQAI----FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWN 290

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM--- 301
           ++IS Y   G   +A+ LFN+M N+ + PD  T  ++L+AC+  G +     I N +   
Sbjct: 291 SMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN 350

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G YG    V  Y  ++ + ++   +  A +   +MP K     W  ++   ++ G
Sbjct: 351 KGAYG----VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVS-WNVIIGALALHG 401



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 132/285 (46%), Gaps = 5/285 (1%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G ++ A  +F  + +P    +N++I G   ++     + L R M  SG+ PN  T+  + 
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                 S       +HG A+K      ++V  A+I  Y   G +H A+++FD    ++L+
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W ++I  YA  G+  +A  LF +M   G++PD  TF  +LS C+ S  +D    +   +
Sbjct: 156 SWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCI 215

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
               G++  +     +V + ++   +  A     +   K     W +++   +  G +E+
Sbjct: 216 EIT-GVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVS-WTSMISAYAQHGSIEV 273

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
            + + D   ++  +N  ++  M + Y + G++ EA  +  +M+ S
Sbjct: 274 ARQIFD---QMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNS 315


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 266/458 (58%), Gaps = 34/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D+VSWNSMI+GYS+     E   LFREM+ +   +P+ +++VSVL ACG+  D+  
Sbjct: 188 ISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG-FQPNEMSLVSVLGACGELGDLKL 246

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E+ + ++ ++ +ALI MY KCG L  AR + D M  KD+V           
Sbjct: 247 GTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKV----------- 295

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNA+I+G  QN   E  + L ++M+ S   P+ +T+  I
Sbjct: 296 --------------------TWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGI 335

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK++  YA +  +  ++YV TA++D YAK G L  A RVF     ++ 
Sbjct: 336 LSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNE 395

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W A+ISA A HG A +A++LF  M+N G  + P+ +TF  VLSAC H+GLVD+   +F
Sbjct: 396 VSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLF 455

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EHY+CMV + SRA  + EA +FV  MP KP   + GALL       +
Sbjct: 456 HMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKN 515

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +++ + V   L E+EP N+GNY+I + LY+   RWD++ R+R  MK+ G++K PG SWI+
Sbjct: 516 IDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWID 575

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  L  F A D    +  +I+ IL+ L+  +R EGY+
Sbjct: 576 INSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYI 613



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 177/405 (43%), Gaps = 42/405 (10%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S+N MI G S           F   +    L+P+ +T   +  AC     +  G   H  
Sbjct: 93  SFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCS 152

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI   +  D  + ++LI MYA+CG +  AR + DE+S KD VS                 
Sbjct: 153 VIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVS----------------- 195

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WN++ISG  +       + L REM  +G +PN +++ S+       
Sbjct: 196 --------------WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGEL 241

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +LK G  +  + V+N+   N ++ +A+I  Y K G L  A+R+FD  K +  + W A+I
Sbjct: 242 GDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMI 301

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD--KAWDIFNAMSGQY 305
           + YA +G + +A+ LF +M  +   PD +T   +LSACA  G +D  K  +I+   + + 
Sbjct: 302 TGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIY---ASER 358

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE----L 361
           G Q  V     +V + ++   +  A      MP K     W A++   +  G  +    L
Sbjct: 359 GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVS-WNAMISALAFHGQAQEALAL 417

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
            K + +    + P N   ++ + +    AG  DE  R+   M  S
Sbjct: 418 FKSMMNEGGTVSP-NDITFVGVLSACVHAGLVDEGRRLFHMMSSS 461


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 270/458 (58%), Gaps = 34/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D+VSWNSMI+GYS+     E   LFREM+ +   +P+ +++VSVL ACG+  D+  
Sbjct: 188 ISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG-FQPNEMSLVSVLGACGELGDLKL 246

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E+ + ++ ++ +ALI MY KCG L  AR + D M  KD+V+++A+I+GY  
Sbjct: 247 GTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQ 306

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ LFQ                               +M+ S   P+ +T+  I
Sbjct: 307 NGMSEEAIKLFQ-------------------------------DMRMSSTAPDQITLIGI 335

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK++  YA +  +  ++YV TA++D YAK G L  A RVF     ++ 
Sbjct: 336 LSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNE 395

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W A+ISA A HG A +A++LF  M+N G  + P+ +TF  VLSAC H+GLVD+   +F
Sbjct: 396 VSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLF 455

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EHY+CMV + SRA  + EA +FV  MP KP   + GALL       +
Sbjct: 456 HMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKN 515

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +++ + V   L E+EP N+GNY+I + LY+   RWD++ R+R  MK+ G++K PG SWI+
Sbjct: 516 IDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWID 575

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  L  F A D    +  +I+ IL+ L+  +R EGY+
Sbjct: 576 INSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYI 613



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 177/405 (43%), Gaps = 42/405 (10%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S+N MI G S           F   +    L+P+ +T   +  AC     +  G   H  
Sbjct: 93  SFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCS 152

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI   +  D  + ++LI MYA+CG +  AR + DE+S KD VS                 
Sbjct: 153 VIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVS----------------- 195

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WN++ISG  +       + L REM  +G +PN +++ S+       
Sbjct: 196 --------------WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGEL 241

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +LK G  +  + V+N+   N ++ +A+I  Y K G L  A+R+FD  K +  + W A+I
Sbjct: 242 GDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMI 301

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD--KAWDIFNAMSGQY 305
           + YA +G + +A+ LF +M  +   PD +T   +LSACA  G +D  K  +I+   + + 
Sbjct: 302 TGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIY---ASER 358

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE----L 361
           G Q  V     +V + ++   +  A      MP K     W A++   +  G  +    L
Sbjct: 359 GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVS-WNAMISALAFHGQAQEALAL 417

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
            K + +    + P N   ++ + +    AG  DE  R+   M  S
Sbjct: 418 FKSMMNEGGTVSP-NDITFVGVLSACVHAGLVDEGRRLFHMMSSS 461


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 283/469 (60%), Gaps = 10/469 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +IVSWN +++G+++ G+++E   +F++ ++     PD VTV SVL + G S  +  G  +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +VI+  +  D  + +A+I MY K G +    +L ++    +    +A I+G   +G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +KA+++F++ K   +     +W ++I+G  QN +    L+L REMQ +GV+PN VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                + + L  G+  HG+AV+     N++V +A+ID YAK G ++ +Q VF+    ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++ ++ HG A + +S+F  ++   ++PD ++FT++LSAC   GL D+ W  F  
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+P +EHY+CMV +L RA ++ EA + + +MP +P + VWGALL    +  +V+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LF +EPEN G Y++++N+Y+  G W E D +R +M+  GL K PG SWI+  
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
             + + +A D S  + +QI   ++ +   MR+ G+       L +VEE+
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 189/394 (47%), Gaps = 42/394 (10%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I S++S+I   ++   + +   +F  M +  ++ PD   + ++ + C + S    G ++H
Sbjct: 81  IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCAELSAFKVGKQIH 139

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                S + MD ++  ++  MY +CG +  AR + D MSDKD V+ SA++  Y   G +E
Sbjct: 140 CVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199

Query: 126 KAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           + + +   M+  G+     +WN ++SG  ++  H+  + + +++   G  P+ VT+SS+ 
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG-------------- 227
                   L  G+ IHGY +K    ++  V +A+ID Y K+G ++G              
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319

Query: 228 -----------------AQRVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEM 266
                            A  +F+ FK +++    + WT+II+  A +G   +A+ LF EM
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
              G++P+ VT  ++L AC +   +       +  + +  +  +V   + ++ + ++  R
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGR 438

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           I+ +    + MP K +   W +L+ G S+ G  +
Sbjct: 439 INLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAK 471



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +AR +L   +  D    + +I+ Y  +     A  + Q +  P + +++++I  L +   
Sbjct: 38  HAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
               + +   M + G+ P++  + ++F + +  S  K GK+IH  +  +  D + +V  +
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +   Y + G +  A++VFDR   + ++  +A++ AYA  G   + V + +EM ++GI+ +
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAM 301
            V++  +LS    SG   +A  +F  +
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKI 243



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++V WNS++ G+S  G  +E  ++F  ++ +  L+PD ++  S+L ACGQ      
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G +    + E + IK  L   + ++ +  + G L  A  L+ EM  + D   + A+++  
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSC 567

Query: 119 MVHGFVEKA 127
            +   V+ A
Sbjct: 568 RLQNNVDLA 576


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 281/491 (57%), Gaps = 38/491 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++++V +N MI  Y     Y E  ++F+ ML S    PD  T   VL+AC    ++  G+
Sbjct: 99  EKNVVFFNVMIRSYVNNNLYVEALSIFQVML-SCAFNPDHYTFPCVLKACSGLDNLRVGL 157

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH+ +++  +  +L+I NAL+ MY KCG L  AR +LD+M  +D VS++++++GY   G
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 123 FVEKAM-------------------------------------DLFQVMKRPGLSTWNAV 145
             + A+                                     ++F+ M +  L +WN +
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I+  V N+     + L  +M+  G++P+AVTI+S+       S L  G+ +H Y  K   
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
             N+ +  A++D YAK G L  A+ VFD+ + R ++ WT+++SAY   G    AV+LF +
Sbjct: 338 QPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAK 397

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           ML++G  PD + F +VLSAC+H+GL+D+    F  M+ QYGI P +EH+ACMV +  RA 
Sbjct: 398 MLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAG 457

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            + EA  F+ +MP++P+ +VWGALL    +   +++G    D LF++ P+ +G Y++++N
Sbjct: 458 EVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSN 517

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           +Y++AG W +   VR  MK+ G+ K+PG S +E +G + +F+A D    +++ IY  L+ 
Sbjct: 518 IYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDV 577

Query: 446 LLGLMREEGYV 456
           L+G M+E GY+
Sbjct: 578 LVGKMKELGYI 588



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 145/336 (43%), Gaps = 19/336 (5%)

Query: 80  CNALIGMYAKCGSLD--YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP 137
           C  ++  Y    +L+  +++ +++E    D      ++  Y   G    A  +F      
Sbjct: 41  CEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEK 100

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            +  +N +I   V NN +   L + + M +    P+  T   +    S   NL+ G ++H
Sbjct: 101 NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH 160

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
              VK   D N+++  A++  Y K G L  A++V D+   R ++ W ++++ YA  G   
Sbjct: 161 DAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFD 220

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL--VDKAWDIFNAMSGQYGIQPSVEHYA 315
            A+ +  EM +  +  D  T  ++     ++ L  V    ++F  M+ +  I  +V    
Sbjct: 221 DALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNV---- 276

Query: 316 CMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
            M+ +       +EA     +M    +KP A    +LL        + LG+ +  H + I
Sbjct: 277 -MIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL--HKY-I 332

Query: 373 EPENTGNYIIMAN----LYSQAGRWDEADRVREQMK 404
           E  N    +++ N    +Y++ G  +EA  V ++M+
Sbjct: 333 EKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMR 368



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 72/256 (28%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LN-----------SPV---------- 37
           M  RD+VSWNSM+AGY+Q G +++   + +EM  LN           SPV          
Sbjct: 198 MPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQ 257

Query: 38  ----------------------------LRPDGVTVVSVLQACGQSSDIV---------- 59
                                       +  + V++   ++ CG   D V          
Sbjct: 258 YIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACG 317

Query: 60  ------FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
                  G  +H ++ + +++ +L + NAL+ MYAKCG L+ AR + D+M  +D VS+++
Sbjct: 318 DLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTS 377

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-----MQAS 168
           ++S Y   G    A+ LF  M   G +  +     ++    H  +LD  R       +  
Sbjct: 378 MMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQY 437

Query: 169 GVRPNAVTISSIFSLF 184
           G+ P     + +  LF
Sbjct: 438 GIVPRIEHFACMVDLF 453


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 278/470 (59%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+VSWNSMI G+ Q G  ++   LF++M  S  ++   VT+V VL AC +  ++ F
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEF 250

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V +++ E+ + ++L + NA++ MY KCGS++ A+ L D M +KD V+++ ++ GY +
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISS 179
               E A ++   M +  +  WNA+IS   QN +    L +  E+Q    ++ N +T+ S
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S  +    L+ G+ IH Y  K+    N +V +A+I  Y+K G L  ++ VF+  + R 
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRD 430

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + +W+A+I   A HG  ++AV +F +M    ++P+ VTFT V  AC+H+GLVD+A  +F+
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFH 490

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI P  +HYAC+V VL R+  + +A +F+  MP+ PS  VWGALL    I  ++
Sbjct: 491 QMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 550

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            L +  C  L E+EP N G +++++N+Y++ G+W+    +R+ M+ +GL K PG S IE 
Sbjct: 551 NLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            G +  F++ D +   SE++Y  L  ++  ++  GY      +L  +EEE
Sbjct: 611 DGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEE 660



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 210/455 (46%), Gaps = 73/455 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K +  +WN++I  Y+ G         F +M++     P+  T   +++A  + S +  
Sbjct: 90  IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   ++S +  D+++ N+LI  Y  CG LD A  +   + +KD VS++++I+G++ 
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  +KA++LF                               ++M++  V+ + VT+  +
Sbjct: 210 KGSPDKALELF-------------------------------KKMESEDVKASHVTMVGV 238

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NL+ G+++  Y  +NR + N+ +A A++D Y K G +  A+R+FD  + +  
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298

Query: 241 IIWT-------------------------------AIISAYAAHGDASKAVSLFNEM-LN 268
           + WT                               A+ISAY  +G  ++A+ +F+E+ L 
Sbjct: 299 VTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQ 358

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
             ++ + +T  + LSACA  G ++    I + +  ++GI+ +    + ++ + S+   + 
Sbjct: 359 KNMKLNQITLVSTLSACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLE 417

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLY 387
           ++ E  + +  K    VW A++ G ++ G    G    D  ++++  N   N +   N++
Sbjct: 418 KSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query: 388 ---SQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
              S  G  DEA+ +  QM ES    +P      C
Sbjct: 474 CACSHTGLVDEAESLFHQM-ESNYGIVPEEKHYAC 507



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 155/365 (42%), Gaps = 40/365 (10%)

Query: 34  NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA--KCG 91
           N P    +    +S+++ C     +    + H  +I +    D +  + L  M A     
Sbjct: 22  NQPTTNNERSRHISLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFA 78

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           SL+YAR + DE+   +  +++ +I  Y                  P LS W         
Sbjct: 79  SLEYARKVFDEIPKPNSFAWNTLIRAYASG-------------PDPVLSIW--------- 116

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
                A LD+V E Q     PN  T   +    +  S+L  G+ +HG AVK+    +++V
Sbjct: 117 -----AFLDMVSESQC---YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFV 168

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
           A ++I  Y   G L  A +VF   K + ++ W ++I+ +   G   KA+ LF +M +  +
Sbjct: 169 ANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 228

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
           +   VT   VLSACA    ++    + + +  +  +  ++     M+ + ++   I +A 
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIE-ENRVNVNLTLANAMLDMYTKCGSIEDAK 287

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
                M  K +   W  +L G +IS D E  + V   L  +  ++   +  + + Y Q G
Sbjct: 288 RLFDAMEEKDNV-TWTTMLDGYAISEDYEAAREV---LNSMPQKDIVAWNALISAYEQNG 343

Query: 392 RWDEA 396
           + +EA
Sbjct: 344 KPNEA 348


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 278/474 (58%), Gaps = 10/474 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+IVSWNS+I  Y Q G   +   +F  M+N  +  PD +T+ SV  AC   S I  
Sbjct: 212 MDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGI-EPDEITLASVASACASLSAIRE 270

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G+++H  V++    + DL + NAL+ MYAKC  ++ AR + D M  +D VS ++++SGY 
Sbjct: 271 GLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYA 330

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V+ A  +F  M    + +WNA+I+G  QN  +E  + L   ++   + P   T  +
Sbjct: 331 KASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +  ++ ++LK G++ H + +K+ +      D +I+V  ++ID Y K G +   + VF+
Sbjct: 391 LLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE 450

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R  + W A+I  YA +G  ++A+ +F EML +G +PD VT   VLSAC+H+GLV++
Sbjct: 451 RMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEE 510

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F +M+ ++G+ P  +HY CMV +L RA  + EA   +  MP++P A VWG+LL   
Sbjct: 511 GRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAAC 570

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++ LGK+V + L EI+P N+G Y++++N+Y++ GRW +  RVR+QM++ G+ K PG
Sbjct: 571 KVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPG 630

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
            SWI     L  F+ KD      + IYLIL+ L   M+  GYV   E +++  Y
Sbjct: 631 CSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYV--PEADDDEPY 682



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D      +L  C +S  +     VH  +I++    +++I N L+ +Y KCG L+ AR + 
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D M  ++  S++A++      G +++A++LF+ M      +WNA++SG  Q +R E  L 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
            V +M +     N  +  S  S  +   +L  G +IHG   K+RY  ++Y+ +A++D Y+
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K   +  AQR FD    R+++ W ++I+ Y  +G A KA+ +F  M+N GI+PD +T  +
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           V SACA    + +   I   +      +  +     +V + ++ RR++EA     +MP++
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
                  +++ G + +  V+  + +  ++ E    N  ++  +   Y+Q G  +EA R+
Sbjct: 318 DVVSE-TSMVSGYAKASSVKAARLMFSNMME---RNVVSWNALIAGYTQNGENEEAVRL 372



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 152/319 (47%), Gaps = 64/319 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD  SWN+M++G++Q   +EE      +M +S     +  +  S L AC    D+  
Sbjct: 111 MPERDQCSWNAMVSGFAQRDRFEEALRFVVDM-HSEDFVLNEYSFGSALSACAGLMDLSI 169

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  + +S   +D+++ +AL+ MY+KC  +  A+   D+M  ++ VS++++I+ Y  
Sbjct: 170 GVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQ 229

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   KA+++F                              VR M   G+ P+ +T++S+
Sbjct: 230 NGPAGKALEVF------------------------------VRMMNC-GIEPDEITLASV 258

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK--- 236
            S  +  S ++ G +IH   +K ++Y  ++ +  A++D YAK   ++ A+ VFDR     
Sbjct: 259 ASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRD 318

Query: 237 ----------------------------GRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                                        R+++ W A+I+ Y  +G+  +AV LF  +  
Sbjct: 319 VVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKR 378

Query: 269 NGIQPDPVTFTAVLSACAH 287
             I P   TF  +L+ACA+
Sbjct: 379 ESIWPTHYTFGNLLNACAN 397


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 270/450 (60%), Gaps = 9/450 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D +SWNSMI+GY  G  ++E  +LFR++L   +  PD  T+ SVL  C   + I  G 
Sbjct: 231 QKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGI-EPDSFTLGSVLAGCADMASIRRGK 289

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E H+  I   ++ +  +  AL+ MY+KC  +  A+   D +S++D  +++A+ISGY    
Sbjct: 290 EAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCN 349

Query: 123 FVEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             EK  +L Q M+R    P + TWN +I+G V+N ++++ + L  EMQ + +RP+  T+ 
Sbjct: 350 QAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVG 409

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            I +  S  + ++ GK++H Y+++  +D ++++  A++D YAK G +    RV++     
Sbjct: 410 IILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNP 469

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L+   A+++AYA HG   + ++LF  ML + ++PD VTF AVLS+C H+G ++   +  
Sbjct: 470 NLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECL 529

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   Y + PS++HY CMV +LSRA ++ EA E +  +P +  A  W ALL G  I  +
Sbjct: 530 ALMVA-YNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNE 588

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V+LG+   + L E+EP N GNY+++ANLY+ AG+W    + R+ MK+ G+ K PG SWIE
Sbjct: 589 VDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIE 648

Query: 419 CSGGLQSFVAKD---TSGDKSEQIYLILER 445
              G+  FVAKD   TS  K +   L +++
Sbjct: 649 DRDGIHVFVAKDIYHTSTSKEDSFDLSVKK 678



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 24/337 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M  R++ SW +++  Y + GF+EE   LF ++L   V +R D      VL+ C     + 
Sbjct: 109 MPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVE 168

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G ++H       +K D              G +  A  +    S K   SY+A+I+GY 
Sbjct: 169 LGRQMHGMA----LKHD--------------GDMKSAFEMFSRFSRKSAASYNAMIAGYW 210

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            +G + KA +LF  M++ G+     +WN++ISG V  +  +    L R++   G+ P++ 
Sbjct: 211 ENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSF 270

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+ S+ +  +  ++++ GKE H  A+      N  V  A+++ Y+K   +  AQ  FD  
Sbjct: 271 TLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGV 330

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R L  W A+IS YA    A K   L  +M  +G +P+  T+  +++    +   D A 
Sbjct: 331 SERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAM 390

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
            +F  M     ++P +     ++   SR   I    +
Sbjct: 391 QLFTEMQIA-NLRPDIYTVGIILAACSRLATIQRGKQ 426



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 68/291 (23%)

Query: 1   MSKRDIVSWNSMIAGYS----------------QGGF-------------------YEEC 25
           +S+RD+ +WN++I+GY+                + GF                   Y+  
Sbjct: 330 VSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSA 389

Query: 26  KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85
             LF EM     LRPD  TV  +L AC + + I  G +VH + I +    D+ I  AL+ 
Sbjct: 390 MQLFTEM-QIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVD 448

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MYAKCG + +   + + +S+ + VS++A+++ Y +HG  E+ + LF              
Sbjct: 449 MYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALF-------------- 494

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
                            R M AS VRP+ VT  ++ S   H  +L+ G E     V    
Sbjct: 495 -----------------RRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYNV 537

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD 255
             ++   T ++D  ++ G L+ A  +       +  + W A++     H +
Sbjct: 538 MPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNE 588



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 153/377 (40%), Gaps = 67/377 (17%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P   T  S+L +CG     + G ++H   I+S      ++   L+ MYA+  S       
Sbjct: 49  PSSTTYASILDSCGSP---ILGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSF------ 99

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
                                    E A  +F  M    L +W A++   ++    E   
Sbjct: 100 -------------------------ENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAF 134

Query: 160 DLVREMQASGVRP--NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L  ++   GVR   +      +  +      ++ G+++HG A+K+              
Sbjct: 135 FLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKH-------------- 180

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
                G +  A  +F RF  +S   + A+I+ Y  +G+  KA  LF+ M   G+Q D ++
Sbjct: 181 ----DGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRIS 236

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGV--LSRARRISEATEFV 334
           + +++S      L D+A+ +F  +  + GI+P S    + + G   ++  RR  EA    
Sbjct: 237 WNSMISGYVDGSLFDEAYSLFRDLLKE-GIEPDSFTLGSVLAGCADMASIRRGKEAHSLA 295

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
               ++ ++ V GAL+   S   D+   +   D + E +   T N +I     S   R +
Sbjct: 296 IVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLP-TWNALI-----SGYARCN 349

Query: 395 EADRVRE---QMKESGL 408
           +A+++RE   +M+  G 
Sbjct: 350 QAEKIRELHQKMRRDGF 366



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++VS N+M+  Y+  G  EE  ALFR ML S V RPD VT ++VL +C  +  +  
Sbjct: 466 ISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKV-RPDHVTFLAVLSSCVHAGSLEI 524

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
           G E    ++  ++   L     ++ + ++ G L  A  L+  + ++ D V+++A++ G  
Sbjct: 525 GHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCF 584

Query: 120 VHGFVE 125
           +H  V+
Sbjct: 585 IHNEVD 590


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 281/491 (57%), Gaps = 38/491 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++++V +N MI  Y     Y E  ++F+ ML S    PD  T   VL+AC    ++  G+
Sbjct: 99  EKNVVFFNVMIRSYVNNNLYVEALSIFQVML-SCAFNPDHYTFPCVLKACSGLDNLRVGL 157

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH+ +++  +  +L+I NAL+ MY KCG L  AR +LD+M  +D VS++++++GY   G
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 123 FVEKAM-------------------------------------DLFQVMKRPGLSTWNAV 145
             + A+                                     ++F+ M +  L +WN +
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I+  V N+     + L  +M+  G++P+AVTI+S+       S L  G+ +H Y  K   
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
             N+ +  A++D YAK G L  A+ VFD+ + R ++ WT+++SAY   G    AV+LF +
Sbjct: 338 RPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAK 397

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           ML++G  PD + F +VLSAC+H+GL+D+    F  M+ QYGI P +EH+ACMV +  RA 
Sbjct: 398 MLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAG 457

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            + EA  F+ +MP++P+ +VWGALL    +   +++G    D LF++ P+ +G Y++++N
Sbjct: 458 EVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSN 517

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           +Y++AG W +   VR  MK+ G+ K+PG S +E +G + +F+A D    +++ IY  L+ 
Sbjct: 518 IYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDV 577

Query: 446 LLGLMREEGYV 456
           L+G M+E GY+
Sbjct: 578 LVGKMKELGYI 588



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 164/391 (41%), Gaps = 54/391 (13%)

Query: 29  FREMLNSPVLRPDGVTV-VSVLQACGQSSDIVFGMEVHN-----FVIESHIKMDLWICNA 82
           FR +++S  +R D + V V   +AC    D   G++  N      VI  H+++D  +   
Sbjct: 17  FRGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIK 76

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           L+  Y+  G    AR + D   +K+ V ++ +I  Y                        
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY------------------------ 112

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
                  V NN +   L + + M +    P+  T   +    S   NL+ G ++H   VK
Sbjct: 113 -------VNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK 165

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
              D N+++  A++  Y K G L  A++V D+   R ++ W ++++ YA  G    A+ +
Sbjct: 166 VGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGL--VDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
             EM +  +  D  T  ++     ++ L  V    ++F  M+ +  I  +V     M+ +
Sbjct: 226 CKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNV-----MIAI 280

Query: 321 LSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
                  +EA     +M    +KP A    +LL        + LG+ +  H + IE  N 
Sbjct: 281 YVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL--HKY-IEKGNL 337

Query: 378 GNYIIMAN----LYSQAGRWDEADRVREQMK 404
              +++ N    +Y++ G  +EA  V ++M+
Sbjct: 338 RPNLLLENALLDMYAKCGCLEEARDVFDKMR 368



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 72/256 (28%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LN-----------SPV---------- 37
           M  RD+VSWNSM+AGY+Q G +++   + +EM  LN           SPV          
Sbjct: 198 MPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQ 257

Query: 38  ----------------------------LRPDGVTVVSVLQACGQSSDIV---------- 59
                                       +  + V++   ++ CG   D V          
Sbjct: 258 YIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACG 317

Query: 60  ------FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
                  G  +H ++ + +++ +L + NAL+ MYAKCG L+ AR + D+M  +D VS+++
Sbjct: 318 DLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTS 377

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-----MQAS 168
           ++S Y   G    A+ LF  M   G +  +     ++    H  +LD  R       +  
Sbjct: 378 MMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQY 437

Query: 169 GVRPNAVTISSIFSLF 184
           G+ P     + +  LF
Sbjct: 438 GIVPRIEHFACMVDLF 453


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/469 (38%), Positives = 271/469 (57%), Gaps = 11/469 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NSMI  Y++ GF E   A +  M +S     D  T   VL++  +   +  G  VH  +
Sbjct: 139 FNSMIRAYARYGFAERTVATYFSM-HSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLI 197

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +   ++ DL++  +LI +Y KCG ++ A  + D M+ +D  S++A+++GY   G ++ A+
Sbjct: 198 LRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAAL 257

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVRPNAVTISSIFSLFSH 186
            +F+ M    + +W  +ISG  Q+   +  L L  EM  + SGVRPN VTI S+    + 
Sbjct: 258 AIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQ 317

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWT 244
            S L+ G++IH  A +   + N  V  A+   YAK G L  A+  FD+     ++LI W 
Sbjct: 318 LSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWN 377

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I+AYA++G   +AVS F EM+  GIQPD +TFT +LS C+HSGLVD     FN MS  
Sbjct: 378 TMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTT 437

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P VEHYAC+  +L RA R++EA++ V +MP+     +WG+LL       ++E+ + 
Sbjct: 438 YSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAET 497

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               LF +EPENTGNY++++N+Y++AGRW E D++R  +K  G  K PG SWIE +G   
Sbjct: 498 AARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAH 557

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESAY 467
            F+  DTS  + ++IY+ LE L   M+  G      YVL D  EEE  +
Sbjct: 558 MFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEF 606



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 3/164 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M  R+IVSW +MI+GYSQ G  ++  +LF EM+     +RP+ VT++SVL AC Q S + 
Sbjct: 263 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 322

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISG 117
            G ++H       +  +  +  AL  MYAKCGSL  AR   D++  ++K+ ++++ +I+ 
Sbjct: 323 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 382

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           Y  +G   +A+  F+ M + G+   +   +GL+    H  ++D+
Sbjct: 383 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDV 426



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 182/432 (42%), Gaps = 65/432 (15%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P  ++   V Q     + +  G +VH  ++   ++    + + ++  YA  G +D + ++
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQ---- 151
            + + +   + ++++I  Y  +GF E+ +  +  M   G +    T+  V+   V+    
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 152 ---NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
                 H  +L +       G++ +    +S+  L+     +       G    N   R+
Sbjct: 188 WMGKCVHGLILRI-------GLQFDLYVATSLIILYGKCGEINDA----GKVFDNMTIRD 236

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML- 267
           +    A++  Y K+G +  A  +F+R   R+++ WT +IS Y+  G A +A+SLF+EM+ 
Sbjct: 237 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 296

Query: 268 -NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
            ++G++P+ VT  +VL ACA    +++   I + ++ + G+  +      +  + ++   
Sbjct: 297 EDSGVRPNWVTIMSVLPACAQLSTLERGRQI-HELACRMGLNSNASVLIALTAMYAKCGS 355

Query: 327 ISEATEFVSKMP------------------------------------VKPSAKVWGALL 350
           + +A     K+                                     ++P    +  LL
Sbjct: 356 LVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLL 415

Query: 351 YGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
            G S SG V++G    +H+   + I P    +Y  +A+L  +AGR  EA ++  +M    
Sbjct: 416 SGCSHSGLVDVGLKYFNHMSTTYSINPR-VEHYACVADLLGRAGRLAEASKLVGEMPMPA 474

Query: 408 LAKIPGRSWIEC 419
              I G     C
Sbjct: 475 GPSIWGSLLAAC 486



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 132/290 (45%), Gaps = 15/290 (5%)

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           +L++ + A G  P  ++ + +F   +  + LK G ++H + +         V + ++  Y
Sbjct: 57  NLLQPLSAPG-PPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFY 115

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           A +G +  +  VF+     S +++ ++I AYA +G A + V+ +  M + G   D  TF 
Sbjct: 116 ASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFP 175

Query: 280 AVLSACAHSGLVDKAW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            VL +      +   W     + +  + G+Q  +     ++ +  +   I++A +    M
Sbjct: 176 FVLKSSVE---LLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNM 232

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEA 396
            ++     W ALL G + SG ++    +    FE  P  N  ++  M + YSQ+G   +A
Sbjct: 233 TIR-DVSSWNALLAGYTKSGCIDAALAI----FERMPWRNIVSWTTMISGYSQSGLAQQA 287

Query: 397 DRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
             + ++M +      P  +W+     L +  A+ ++ ++  QI+ +  R+
Sbjct: 288 LSLFDEMVKEDSGVRP--NWVTIMSVLPA-CAQLSTLERGRQIHELACRM 334


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/471 (36%), Positives = 274/471 (58%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW +MI+ YSQ G+  +  +LF +ML S    P+  T  +VL +C  SS  V 
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGT-EPNEFTFATVLTSCIGSSGFVL 177

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ +I+ + +  +++ ++L+ MYAK G +  AR +   + ++D VS +AIISGY  
Sbjct: 178 GRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQ 237

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+A++LF                               R +Q  G++ N VT +S+
Sbjct: 238 LGLDEEALELF-------------------------------RRLQREGMQSNYVTYTSV 266

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK++H + +++     + +  ++ID Y+K G L  A+R+FD    R++
Sbjct: 267 LTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTV 326

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W A++  Y+ HG+  + + LFN M++ N ++PD VT  AVLS C+H GL DK  DIF 
Sbjct: 327 ISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFY 386

Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            M SG+  +QP  +HY C+V +L RA R+  A EFV KMP +PSA +WG LL   S+  +
Sbjct: 387 DMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSN 446

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +++G+FV   L +IEPEN GNY+I++NLY+ AGRW++   +R  M +  + K PGRSWIE
Sbjct: 447 LDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIE 506

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               L +F A D S  + E++   ++ L    +E GYV     +L +V+EE
Sbjct: 507 LDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEE 557



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 147/317 (46%), Gaps = 43/317 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +VL  C +   I  G  VH  +I++H    +++   LI  Y KC SL  AR + D M ++
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPER 122

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS++A+IS Y   G+  +A+ LF  M R                              
Sbjct: 123 NVVSWTAMISAYSQRGYASQALSLFVQMLR------------------------------ 152

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            SG  PN  T +++ +     S    G++IH + +K  Y+ ++YV ++++D YAK G +H
Sbjct: 153 -SGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIH 211

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ +F     R ++  TAIIS YA  G   +A+ LF  +   G+Q + VT+T+VL+A +
Sbjct: 212 EARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALS 271

Query: 287 HSGLVDKAWDIFNAM-----SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
               +D    + N +          +Q S+       G L+ ARRI +          + 
Sbjct: 272 GLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLH-------ER 324

Query: 342 SAKVWGALLYGASISGD 358
           +   W A+L G S  G+
Sbjct: 325 TVISWNAMLVGYSKHGE 341


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 281/506 (55%), Gaps = 43/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+++  N MI  Y   GFY E   +F  M +  V +PD  T   VL+AC  S +IV 
Sbjct: 101 IPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHV-KPDHYTFPCVLKACSCSGNIVI 159

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +  +   L++ N L+ MY KCG L  AR +LDEMS +D VS++++++GY  
Sbjct: 160 GKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQ 219

Query: 121 HGFVEKAM-------------------------------------DLFQVMKRPGLSTWN 143
           +   + A+                                     D+F  M +  L +WN
Sbjct: 220 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWN 279

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I   ++N      ++L   M+A G  P+AV+I+S+       S L  GK+IHGY  + 
Sbjct: 280 VMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK 339

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  A+ID YAK G L  A+ VF+  K R ++ WTA+ISAY   G    AV+LF
Sbjct: 340 KLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALF 399

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           ++M ++G+ PD + F   L+AC+H+GL+++    F  M+  Y I P +EH ACMV +L R
Sbjct: 400 SKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGR 459

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A ++ EA +F+ +MP++P+ +VWGALL    +  + ++G    D LF++ PE +G Y+++
Sbjct: 460 AGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLL 519

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW+E   +R  MK  GL K PG S +E +  + +F+  D S  +S +IY  L
Sbjct: 520 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYREL 579

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
           + L+  M+E GYV      L +VEEE
Sbjct: 580 DVLVKKMKELGYVPDSESALHDVEEE 605



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 60/356 (16%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+ +I   ++ +  +   L+  YA    +  AR + DE+ +++ +  + +I  Y+ +GF
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             + + +F  M                                +  V+P+  T   +   
Sbjct: 122 YREGIQVFGTM-------------------------------CSCHVKPDHYTFPCVLKA 150

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   N+  GK+IHG A K      ++V   ++  Y K GFL  A+ V D    R ++ W
Sbjct: 151 CSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW 210

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW--DIFNAM 301
            ++++ YA +     A+ +  EM +  I  D  T  ++L A +++   +  +  D+F  M
Sbjct: 211 NSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKM 270

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-------------PVKPSAKVWGA 348
                 + S+  +  M+GV  +     EA E  S M              V P+     A
Sbjct: 271 G-----KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSA 325

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           L  G  I G +E  K + + L E       N +I  ++Y++ G  D A  V E MK
Sbjct: 326 LSLGKKIHGYIERKKLIPNLLLE-------NALI--DMYAKCGCLDRARDVFENMK 372



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%)

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
           + +LK  + +H   +      N  +   ++  YA    +  A++VFD    R++II   +
Sbjct: 53  YPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVM 112

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           I +Y  +G   + + +F  M +  ++PD  TF  VL AC+ SG
Sbjct: 113 IRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSG 155


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/463 (36%), Positives = 276/463 (59%), Gaps = 9/463 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++V+WNS+I  Y Q G   E   +F  M++S  L PD VT+ SV+ AC     +  
Sbjct: 208 MIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG-LEPDEVTLASVVSACASLCALKE 266

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G+++H  V++++  + DL + NAL+ MYAKC  ++ AR + D MS ++ VS ++++SGY 
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYA 326

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V+ A  +F  M +  + +WNA+I+G  QN  +E  L L R ++   + P   T  +
Sbjct: 327 RAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGN 386

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD------RNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + S  ++ ++L  G++ H + +K  ++       +I+V  ++ID Y K G +    RVF+
Sbjct: 387 LLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFE 446

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           + K R  + W AII  YA +G  ++A+ +F +ML  G +PD VT   VL AC+H+GLV++
Sbjct: 447 KMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEE 506

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F +M  ++G+ P  +HY CMV +L RA  ++EA   +  MPV P A VWG+LL   
Sbjct: 507 GRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAAC 565

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++E+GK   + L EI+P N+G Y++++N+Y++ GRW +  RVR+ M++ G+ K PG
Sbjct: 566 KVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPG 625

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            SWIE    +  F+ KD S    +QIY +L+ L   M+  GY+
Sbjct: 626 CSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYI 668



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 187/369 (50%), Gaps = 4/369 (1%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+      +L +C +S        VH  ++ +   M+++I N LI +Y KC  LD AR L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D M  ++  +++++IS     GF+++A  LF  M  P   +WN+++SG  Q++R E  L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           +   +M       N  +  S  S  +   +L  G ++H    K+RY  ++Y+ +A+ID Y
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           +K G +  A+ VF     R+L+ W ++I+ Y  +G AS+A+ +F  M+++G++PD VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           +V+SACA    + +   I   +      +  +     +V + ++  +++EA     +M +
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           +       +++ G + +  V+  +F+     ++   N  ++  +   Y+Q G  +EA R+
Sbjct: 313 RNVVSE-TSMVSGYARAASVKAARFM---FSKMTQRNVVSWNALIAGYTQNGENEEALRL 368

Query: 400 REQMKESGL 408
              +K   +
Sbjct: 369 FRLLKRESI 377



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 195/443 (44%), Gaps = 106/443 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-------LNSPV---------------- 37
           M +R+  +WNS+I+  ++ GF +E   LF  M        NS V                
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 38  ---LRPDGV----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
               R D +    +  S L AC    D+  G +VH  V +S    D+++ +ALI MY+KC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+  A  +   M +++ V+++++I+ Y  +G   +A+++F                   
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVF------------------- 236

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNI 209
                      VR M  SG+ P+ VT++S+ S  +    LK G +IH   VK N++  ++
Sbjct: 237 -----------VR-MMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            +  A++D YAK   ++ A+RVFDR   R+++  T+++S YA       A  +F++M   
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKM--- 341

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
             Q + V++ A+++    +G  ++A  +F                               
Sbjct: 342 -TQRNVVSWNALIAGYTQNGENEEALRLF------------------------------- 369

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL----FEIEPENTGNYII--- 382
               + +  + P+   +G LL   +   D+ LG+    H+    FE +     +  +   
Sbjct: 370 --RLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNS 427

Query: 383 MANLYSQAGRWDEADRVREQMKE 405
           + ++Y + G  ++  RV E+MKE
Sbjct: 428 LIDMYMKCGSIEDGSRVFEKMKE 450


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 28/455 (6%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           +RPD V++V+VL AC      + G  VH   + S    DL++ NAL+ MYAKCG +D A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNN 153
            + D + +KD VS++A+++GY   G  E A+ LF+ M+   +     +W+AVI+   Q  
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 154 RHEAVLDLVREMQASG-----------------VRPNAVTISSIFSLFSHFSNLKGGKEI 196
                LD+ REMQ                    V+PN  TIS      +  + L+ G++I
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 197 HGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           H Y ++N +D   +YVA  +ID YAK+G +  A+ VFD  K ++ + WT++++ Y  HG 
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             +A+ +F+EM   G+QPD VT   VL AC+HSG++D+  + FN+MS ++G+ P  EHYA
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375
           CMV +L RA R++EA E +  M ++PS+ VW ALL G  I  +VELG+     L E+  E
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE 368

Query: 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDK 435
           N G+Y +++N+Y+ A RW +  RVR  MK SG+ K PG SW++   G  +F   D +  +
Sbjct: 369 NDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQ 428

Query: 436 SEQIYLILE------RLLGLMREEGYVLLDEVEEE 464
           S+QIY IL       ++LG + E  + L D  +EE
Sbjct: 429 SKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEE 463



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 95/173 (54%), Gaps = 17/173 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSP----------------VLRPDGVTVVSV 48
           ++VSW+++IA ++Q G   E   +FREM +                  +++P+  T+   
Sbjct: 113 NVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCA 172

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           L AC + + +  G ++H +++ +H     L++ N LI MYAK G +D AR + D +  K+
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
            VS++++++GY +HG  ++A+++F  M+R GL      +  ++    H  ++D
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMID 285



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++ VSW S++ GY   G  +E   +F EM     L+PDGVT++ VL AC  S  I  
Sbjct: 228 LKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVG-LQPDGVTLLVVLYACSHSGMIDQ 286

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+E  N + +        + + C  ++ +  + G L+ A  L++ M  +   + + A++S
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYAC--MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLS 344

Query: 117 GYMVHGFVE 125
           G  +H  VE
Sbjct: 345 GCRIHANVE 353


>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 867

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 170/492 (34%), Positives = 279/492 (56%), Gaps = 42/492 (8%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + +WN++++G ++ G   E  A+ R ML   +L PD  TV S+L++   S  +  G EVH
Sbjct: 286 LATWNTVLSGCARHGRDREALAVVRRMLEQGIL-PDAATVSSLLKSVANSGSLGHGTEVH 344

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F +   +  D +   AL+ MYAKCG LD A+ + D +  ++  +++++++G+   G  +
Sbjct: 345 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFD 404

Query: 126 KAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI- 180
           +A++L + MKR    P ++TWN +I+G   N      + L+R+++++GV PN V+ +S+ 
Sbjct: 405 RALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSWTSLI 464

Query: 181 ------------FSLFSHFSN----------------------LKGGKEIHGYAVKNRYD 206
                       F+ FS                          L  GKE+H +A++  YD
Sbjct: 465 SGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALRRAYD 524

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
             + V+TA+ID YAK G L  A+RVF R +G++L+   A+++  A HG A +A +LF++M
Sbjct: 525 GEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAALFHDM 584

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
             +G++PD +TFTA+L+AC   GLV +AW+  + M  +YG+ P+ EH+ACMV +L+R   
Sbjct: 585 WRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLARRGY 644

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + EA  F+ + P +P A  WGALL G +I G+++L +    HLF++EP N+ NY+ M +L
Sbjct: 645 LDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYLAMMSL 704

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE--QIYLILE 444
           Y Q   +DEA+ ++  MK  G+   PG SW +    +  F     S    E  +IY  + 
Sbjct: 705 YEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPEIYDEMS 764

Query: 445 RLLGLMREEGYV 456
           RL+  MR  GYV
Sbjct: 765 RLVSQMRMVGYV 776



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 206/439 (46%), Gaps = 28/439 (6%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V WN  +A  ++ G ++   A FREM    V   DG      L ACG++   + G  
Sbjct: 142 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVA-ADGYACARALHACGRAGRRLEGRA 200

Query: 64  VHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH   +    +     +   L GMYA+   +  A  +L   +    V+++A+I+  +  G
Sbjct: 201 VHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLG 260

Query: 123 FVEKAMDLFQVMKR---------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
            V+ A++L + M R         P L+TWN V+SG  ++ R    L +VR M   G+ P+
Sbjct: 261 LVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPD 320

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           A T+SS+    ++  +L  G E+H + +++    + Y  TA++D YAK G L  AQRVFD
Sbjct: 321 AATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFD 380

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             + R+L  W ++++ +A  G   +A+ L   M  + I P+  T+  +++  A +GL  +
Sbjct: 381 GLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQ 440

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALL 350
           A  +   +    G+ P+V  +  ++          ++  F S+M    ++PS      LL
Sbjct: 441 AMLLLRQIKSA-GVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLL 499

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESG 407
              +    +  GK +  H F +     G  ++   + ++Y++AG    A RV        
Sbjct: 500 RACAGLALLTKGKEL--HCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRV-------- 549

Query: 408 LAKIPGRSWIECSGGLQSF 426
             ++ G++ + C+  L   
Sbjct: 550 FGRVQGKNLVCCNAMLTGL 568



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 18/205 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++V  N+M+ G +  G   E  ALF +M  S  L+PDG+T  ++L AC +S  +V   E
Sbjct: 556 KNLVCCNAMLTGLAVHGQAHEAAALFHDMWRSG-LKPDGITFTALLTAC-RSMGLV--TE 611

Query: 64  VHNFVIESHIKMDLWIC----NALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGY 118
              ++ +   K  +         ++ + A+ G LD A A ++   ++    S+ A+++G 
Sbjct: 612 AWEYLDDMEAKYGVAPTAEHHACMVDLLARRGYLDEAMAFIERSPAEPGASSWGALLTGC 671

Query: 119 MVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV--RP 172
            +HG ++     A  LF+ ++    + + A++S   Q+   +    L   M+A GV  RP
Sbjct: 672 AIHGNLDLAESAARHLFK-LEPHNSANYLAMMSLYEQHQMFDEAESLKYAMKARGVDARP 730

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIH 197
                 +  S+  H   + GG   H
Sbjct: 731 GWSWTQAGRSI--HVFEVDGGSSPH 753


>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 866

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 170/492 (34%), Positives = 279/492 (56%), Gaps = 42/492 (8%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + +WN++++G ++ G   E  A+ R ML   +L PD  TV S+L++   S  +  G EVH
Sbjct: 285 LATWNTVLSGCARHGRDREALAVVRRMLEQGIL-PDAATVSSLLKSVANSGSLGHGTEVH 343

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F +   +  D +   AL+ MYAKCG LD A+ + D +  ++  +++++++G+   G  +
Sbjct: 344 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFD 403

Query: 126 KAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI- 180
           +A++L + MKR    P ++TWN +I+G   N      + L+R+++++GV PN V+ +S+ 
Sbjct: 404 RALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSWTSLI 463

Query: 181 ------------FSLFSHFSN----------------------LKGGKEIHGYAVKNRYD 206
                       F+ FS                          L  GKE+H +A++  YD
Sbjct: 464 SGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALRRAYD 523

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
             + V+TA+ID YAK G L  A+RVF R +G++L+   A+++  A HG A +A +LF++M
Sbjct: 524 GEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAALFHDM 583

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
             +G++PD +TFTA+L+AC   GLV +AW+  + M  +YG+ P+ EH+ACMV +L+R   
Sbjct: 584 WRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLARRGY 643

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + EA  F+ + P +P A  WGALL G +I G+++L +    HLF++EP N+ NY+ M +L
Sbjct: 644 LDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYLAMMSL 703

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE--QIYLILE 444
           Y Q   +DEA+ ++  MK  G+   PG SW +    +  F     S    E  +IY  + 
Sbjct: 704 YEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPEIYDEMS 763

Query: 445 RLLGLMREEGYV 456
           RL+  MR  GYV
Sbjct: 764 RLVSQMRMVGYV 775



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 206/439 (46%), Gaps = 28/439 (6%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V WN  +A  ++ G ++   A FREM    V   DG      L ACG++   + G  
Sbjct: 141 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVA-ADGYACARALHACGRAGRRLEGRA 199

Query: 64  VHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH   +    +     +   L GMYA+   +  A  +L   +    V+++A+I+  +  G
Sbjct: 200 VHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLG 259

Query: 123 FVEKAMDLFQVMKR---------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
            V+ A++L + M R         P L+TWN V+SG  ++ R    L +VR M   G+ P+
Sbjct: 260 LVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPD 319

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           A T+SS+    ++  +L  G E+H + +++    + Y  TA++D YAK G L  AQRVFD
Sbjct: 320 AATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFD 379

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             + R+L  W ++++ +A  G   +A+ L   M  + I P+  T+  +++  A +GL  +
Sbjct: 380 GLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQ 439

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALL 350
           A  +   +    G+ P+V  +  ++          ++  F S+M    ++PS      LL
Sbjct: 440 AMLLLRQIKSA-GVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLL 498

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESG 407
              +    +  GK +  H F +     G  ++   + ++Y++AG    A RV        
Sbjct: 499 RACAGLALLTKGKEL--HCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRV-------- 548

Query: 408 LAKIPGRSWIECSGGLQSF 426
             ++ G++ + C+  L   
Sbjct: 549 FGRVQGKNLVCCNAMLTGL 567



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 18/205 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++V  N+M+ G +  G   E  ALF +M  S  L+PDG+T  ++L AC +S  +V   E
Sbjct: 555 KNLVCCNAMLTGLAVHGQAHEAAALFHDMWRSG-LKPDGITFTALLTAC-RSMGLV--TE 610

Query: 64  VHNFVIESHIKMDLWIC----NALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGY 118
              ++ +   K  +         ++ + A+ G LD A   ++   ++    S+ A+++G 
Sbjct: 611 AWEYLDDMEAKYGVAPTAEHHACMVDLLARRGYLDEAMTFIERSPAEPGASSWGALLTGC 670

Query: 119 MVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV--RP 172
            +HG ++     A  LF+ ++    + + A++S   Q+   +    L   M+A GV  RP
Sbjct: 671 AIHGNLDLAESAARHLFK-LEPHNSANYLAMMSLYEQHQMFDEAESLKYAMKARGVDARP 729

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIH 197
                 +  S+  H   + GG   H
Sbjct: 730 GWSWTQAGRSI--HVFEVDGGSSPH 752


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 300/524 (57%), Gaps = 59/524 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD++SWNSMI+GY   G  E    ++++M+   +   D  T++SVL  C  S  +  
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCANSGTLSL 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  I+S  +  +   N L+ MY+KCG LD A  + ++M +++ VS++++I+GY  
Sbjct: 270 GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVI---------SGLVQNNR--HE------------- 156
            G+ + A+ L Q M++ G+      I         SG + N +  H+             
Sbjct: 330 DGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFV 389

Query: 157 --AVLDLVRE---MQASG--------------------VRPNAVTISSIFSLFSHFSNLK 191
             A++D+  +   M+ +                     ++P++ T++ I    +  S L+
Sbjct: 390 CNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALE 449

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GKEIHGY ++N Y  + +VA A++D Y K G L  A+ +FD    + L+ WT +I+ Y 
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            HG  ++A++ FNEM + GI+PD V+F ++L AC+HSGL+++ W  F  M   + I+P +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
           EHYACMV +LSR   +S+A +F+  +P+ P A +WGALL G  I  D+EL + V + +FE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE 629

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA-KD 430
           +EPENTG Y+++AN+Y++A + +E  R+RE++ + GL K PG SWIE  G +  FV+  +
Sbjct: 630 LEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNN 689

Query: 431 TSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
           +S   S++I  +L+++   M+EEGY        +  DE+++E A
Sbjct: 690 SSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMA 733



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 155/314 (49%), Gaps = 23/314 (7%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +  +N+ I  + Q G  E    L      S +   +  T  SVLQ C     +  G +VH
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELVCMCQKSEL---ETKTYGSVLQLCAGLKSLTDGKKVH 122

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           + +  + + +D  +   L+  YA CG L   R + D M  K+   ++ ++S Y   G  +
Sbjct: 123 SIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK 182

Query: 126 KAMDLFQVM-------KRP-------------GLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +++ LF++M       KRP              + +WN++ISG V N   E  L + ++M
Sbjct: 183 ESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              G+  +  TI S+    ++   L  GK +H  A+K+ ++R I  +  ++D Y+K G L
Sbjct: 243 MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDL 302

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            GA RVF++   R+++ WT++I+ Y   G +  A+ L  +M   G++ D V  T++L AC
Sbjct: 303 DGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHAC 362

Query: 286 AHSGLVDKAWDIFN 299
           A SG +D   D+ +
Sbjct: 363 ARSGSLDNGKDVHD 376


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 175/454 (38%), Positives = 257/454 (56%), Gaps = 33/454 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD VSWN+MIAGY+Q G +EE  A F+EM  + V  P+  T+V+VL AC QS  +  G  
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV-APNESTMVTVLSACAQSGSLELGNW 285

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V +++ +  +  +L + NALI MY+KCG LD AR                          
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR-------------------------- 319

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                DLF+ +    + +WN +I G    N ++  L L R+MQ S V PN VT  SI   
Sbjct: 320 -----DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 184 FSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            ++   L  GK IH Y  K      N  + T++ID YAK G +  A++VF   K +SL  
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W A+IS  A HG A+ A+ LF +M + G +PD +TF  VLSAC+H+GLV+     F++M 
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMV 494

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y I P ++HY CM+ +L RA    EA   +  M +KP   +WG+LL    + G+VELG
Sbjct: 495 EDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELG 554

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +F   HLFE+EPEN G Y++++N+Y+ AGRWD+  R+R ++ + G+ K+PG S IE    
Sbjct: 555 EFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSV 614

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  F+  D   ++S+ IY +L+ +  L+ + G+V
Sbjct: 615 VHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHV 648



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 208/433 (48%), Gaps = 39/433 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI G S           +  ML   V  P+  T   +L++C +      G ++H  V
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGV-EPNSYTFPFLLKSCAKVGATQEGKQIHGHV 158

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++  ++ D ++  +LI MYA+ G L YA  +  + S +D VS++A+I+GY + G ++ A 
Sbjct: 159 LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDAR 218

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF+ +      +WNA+I+G  Q+ R E  L   +EM+ + V PN  T+ ++ S  +   
Sbjct: 219 RLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSG 278

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G  +  +   +    N+ +  A+ID Y+K G L  A+ +F+    + +I W  +I 
Sbjct: 279 SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIG 338

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD---------------- 292
            Y+      +A++LF +M  + ++P+ VTF ++L ACA+ G +D                
Sbjct: 339 GYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 293 --------------KAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM 337
                         K  +I  A     G++P S+  +  M+  L+     + A E   +M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 338 P---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAG 391
                +P    +  +L   S +G VELG+     +   ++I P+   +Y  M +L  +AG
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK-LQHYGCMIDLLGRAG 517

Query: 392 RWDEADRVREQMK 404
            +DEA+ + + M+
Sbjct: 518 LFDEAEALMKNME 530



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 66/353 (18%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  A+ LF+ +++P    WN +I G   ++     +D    M   GV PN+ T   + 
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT------------------- 222
              +     + GK+IHG+ +K   + + +V T++I+ YA+                    
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 223 ------------GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
                       G L  A+R+F+    R  + W A+I+ YA  G   +A++ F EM    
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 271 IQPDPVTFTAVLSACAHSGLVD-----KAW----------DIFNAMSGQY---------- 305
           + P+  T   VLSACA SG ++     ++W           + NA+   Y          
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 306 ----GI-QPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
               GI +  +  +  M+G  S      EA     KM    V+P+   + ++L   +  G
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 358 DVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            ++LGK++  ++ +  +   NT  +  + ++Y++ G  + A +V   MK   L
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN+MI+G +  G       LFR+M +     PD +T V VL AC  +  +  
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEG-FEPDDITFVGVLSACSHAGLVEL 485

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
           G +  + ++E + I   L     +I +  + G  D A AL+  M  K D   + +++   
Sbjct: 486 GRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGAC 545

Query: 119 MVHGFVE----KAMDLFQV-MKRPG 138
            VHG VE     A  LF++  + PG
Sbjct: 546 RVHGNVELGEFAAKHLFELEPENPG 570


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 276/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSWN++IAGY+Q G   +    F  ML+   + PD  T+ SVL AC     +  
Sbjct: 254 MPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSI 313

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G +VH +++ S +     + NALI MYAK GS++ AR ++ +  M+D + +S++A++ GY
Sbjct: 314 GKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGY 373

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G ++ A ++F VM    +  W A+I G  QN  ++  ++L R M  SG  PN+ T++
Sbjct: 374 VKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVA 433

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S+ +  + L+ GK+IH  A+++  +++  V+ +I+  YA++G L  A+RVFDR   R
Sbjct: 434 AVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWR 493

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              + WT++I A A HG    AV LF EML  G++PD +TF  VLSAC H G VD+    
Sbjct: 494 KETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRY 553

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F  +  ++GI P + HYACMV +L+RA   SEA EF+ +MPV+P A  WG+LL    +  
Sbjct: 554 FQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHK 613

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + +L +   + L  I+P N+G Y  ++N+YS  GRW++A ++ ++ K+  + K  G SW 
Sbjct: 614 NADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWT 673

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                +  F A D    + + +Y    ++   +++ G+V     +L +V++E
Sbjct: 674 HIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDE 725



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 214/475 (45%), Gaps = 75/475 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW  M+ G ++ G + E   +F +M+    L P   T+ +VL +C  +     
Sbjct: 122 MPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDG-LSPTQFTLTNVLSSCAATEARGV 180

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FV++  +   + + N+++ MY KCG  + ARA+ + M ++   S++A++S    
Sbjct: 181 GRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAH 240

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISS 179
            G ++ A+ LF+ M    + +WNAVI+G  QN  + +A+    R +  S + P+  TI+S
Sbjct: 241 LGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITS 300

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY---------------------------------D 206
           + S  ++   +  GK++H Y +++R                                  D
Sbjct: 301 VLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMAD 360

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            N+   TA+++ Y K G +  A+ +FD    R ++ WTA+I  Y  +G   +A+ LF  M
Sbjct: 361 LNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLM 420

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS------VEHYACMVGV 320
           + +G +P+  T  AVLS CA    ++    I          Q S      V  YA   G 
Sbjct: 421 IRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYA-RSGS 479

Query: 321 LSRARRI-------SEATEFVS----------------------KMPVKPSAKVWGALLY 351
           L  ARR+        E   + S                      ++ VKP    +  +L 
Sbjct: 480 LPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLS 539

Query: 352 GASISGDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             +  G V+ GK     L +   I PE   +Y  M +L ++AG + EA    +QM
Sbjct: 540 ACTHVGFVDEGKRYFQQLQDKHGIVPE-MSHYACMVDLLARAGLFSEAQEFIQQM 593



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 129/283 (45%), Gaps = 39/283 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY-----AKCGSLDYARALLDE 102
           +LQ C  +++   G  +H   +++ +    ++CN L+  Y        G    AR L DE
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 103 M--SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           +  + ++  ++++++S Y   G +  A  +F  M      +W  ++ GL +  R    + 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           +  +M   G+ P   T++++ S  +       G+++H + VK      + VA ++++ Y 
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208

Query: 221 KTGFLHGAQRVFDRFKGRS-------------------------------LIIWTAIISA 249
           K G    A+ VF+R   RS                               ++ W A+I+ 
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268

Query: 250 YAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLV 291
           Y  +G  +KA+  F+ ML+ + + PD  T T+VLSACA+ G+V
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMV 311



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           RN++   +++  YAK+G L  A+ VF     R  + WT ++      G   +A+ +F +M
Sbjct: 94  RNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDM 153

Query: 267 LNNGIQPDPVTFTAVLSACAHSGL--VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           + +G+ P   T T VLS+CA +    V +    F    G     P       M G    A
Sbjct: 154 VTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDA 213

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF-VCDHLFEIEPENT 377
                A     +MP + S   W A+     +S D  LG+  +   LFE  P+ T
Sbjct: 214 ---ETARAVFERMPER-SVSSWNAM-----VSLDAHLGRMDLALSLFENMPDRT 258


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 264/455 (58%), Gaps = 33/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +  IVSW S+IA + + G + E   LF EM  S  LRPD   V SV+ AC  S+ +  
Sbjct: 320 MGETTIVSWTSIIAAHVREGLHYEAIGLFDEM-QSKGLRPDIYAVTSVVHACACSNSLDK 378

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVHN + ++++  +L + NAL+ MYAKCGS++ A  +  ++  K+ VS          
Sbjct: 379 GREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVS---------- 428

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I G  QN+     L L  +MQ   ++P+ VT++ +
Sbjct: 429 ---------------------WNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACV 466

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L+ G+EIHG+ ++  Y  +++VA A++D Y K G L  AQ++FD    + +
Sbjct: 467 LPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDM 526

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+WT +I+ Y  HG   +A+S F +M   GI+P+  +FT++L AC HSGL+ + W +F++
Sbjct: 527 ILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDS 586

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +  I+P +EHYACMV +L R+  +S A +F+  MP+KP A +WGALL G  I  DVE
Sbjct: 587 MKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVE 646

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V +H+FE+EPENT  Y+++AN+Y++A +W+E  +++ ++ + GL    G SWIE  
Sbjct: 647 LAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQ 706

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G    F A DTS  +++ I  +L +L   M   GY
Sbjct: 707 GKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGGY 741



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 183/382 (47%), Gaps = 43/382 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD+VSWNSMI+G +  GF       F +MLN  V   D  T+V+VL AC    ++  
Sbjct: 219 LSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGV-DVDSATLVNVLVACANVGNLTL 277

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + +++     +   N L+ MY+KCG+L+ A  +  +M +   VS+++II+ ++ 
Sbjct: 278 GRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVR 337

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+ LF                                EMQ+ G+RP+   ++S+
Sbjct: 338 EGLHYEAIGLFD-------------------------------EMQSKGLRPDIYAVTSV 366

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G+E+H +  KN    N+ V+ A+++ YAK G +  A  +F +   +++
Sbjct: 367 VHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNI 426

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  Y+ +   ++A+ LF +M    ++PD VT   VL ACA    ++K  +I   
Sbjct: 427 VSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEKGREIHGH 485

Query: 301 M--SGQYGIQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASI 355
           +   G +    S  H AC +V +  +   +  A +    +P K    +W  ++  YG   
Sbjct: 486 ILRKGYF----SDLHVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHG 540

Query: 356 SGDVELGKFVCDHLFEIEPENT 377
            G   +  F    +  IEPE +
Sbjct: 541 FGKEAISTFEKMRVAGIEPEES 562



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 164/349 (46%), Gaps = 34/349 (9%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I  WN +++ Y++ G Y E   LF +M    + R D  T   VL+    S+ +     VH
Sbjct: 123 IFLWNLLMSEYAKIGNYRESVGLFEKMQELGI-RGDSYTFTCVLKGFAASAKVRECKRVH 181

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            +V++        + N+LI  Y KCG ++ AR L       DE+S   ++S         
Sbjct: 182 GYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILF------DELSDRDVVS--------- 226

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                           WN++ISG   N      L+   +M   GV  ++ T+ ++    +
Sbjct: 227 ----------------WNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACA 270

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
           +  NL  G+ +H Y VK  +   +     ++D Y+K G L+GA  VF +    +++ WT+
Sbjct: 271 NVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTS 330

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           II+A+   G   +A+ LF+EM + G++PD    T+V+ ACA S  +DK  ++ N +  + 
Sbjct: 331 IIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIK-KN 389

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            +  ++     ++ + ++   + EA    S++PVK     W  ++ G S
Sbjct: 390 NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVS-WNTMIGGYS 437



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/443 (20%), Positives = 180/443 (40%), Gaps = 84/443 (18%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE- 102
           T  SVLQ C +   +  G  VH+ +  + + +D  +   L+ MY  CG L   R + D  
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           ++DK                                +  WN ++S   +   +   + L 
Sbjct: 119 LNDK--------------------------------IFLWNLLMSEYAKIGNYRESVGLF 146

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            +MQ  G+R ++ T + +   F+  + ++  K +HGY +K  +     V  ++I  Y K 
Sbjct: 147 EKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKC 206

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G +  A+ +FD    R ++ W ++IS    +G +   +  F +MLN G+  D  T   VL
Sbjct: 207 GEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVL 266

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM----- 337
            ACA+ G +       +A   + G    V     ++ + S+   ++ A E   KM     
Sbjct: 267 VACANVGNLTLG-RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTI 325

Query: 338 -----------------------------PVKPSAKVWGALLYGASISGDVELGKFVCDH 368
                                         ++P      ++++  + S  ++ G+ V +H
Sbjct: 326 VSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNH 385

Query: 369 LFEIEPENTGNYI----IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              I+  N G+ +     + N+Y++ G  +EA+ +  Q+    +      SW    GG  
Sbjct: 386 ---IKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIV-----SWNTMIGG-- 435

Query: 425 SFVAKDTSGDKSEQIYLILERLL 447
              ++++  +++ Q++L +++ L
Sbjct: 436 --YSQNSLPNEALQLFLDMQKQL 456



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           NA I    +       + L+   Q S +  N  T  S+  L +   +L+ GK +H     
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISS 85

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           N    +  +   ++  Y   G L   +R+FD      + +W  ++S YA  G+  ++V L
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGL 145

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           F +M   GI+ D  TFT VL   A S  V
Sbjct: 146 FEKMQELGIRGDSYTFTCVLKGFAASAKV 174


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 276/506 (54%), Gaps = 43/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+++  N MI  Y   GFY E   +F  M    V RPD  T   VL+AC  S  IV 
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV-RPDHYTFPCVLKACSCSGTIVI 158

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +  +   L++ N L+ MY KCG L  AR +LDEMS +D VS+++++ GY  
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218

Query: 121 HGFVEKAM-------------------------------------DLFQVMKRPGLSTWN 143
           +   + A+                                     D+F  M +  L +WN
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWN 278

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I   ++N      ++L   M+A G  P+AV+I+S+       S L  GK+IHGY  + 
Sbjct: 279 VMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK 338

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  A+ID YAK G L  A+ VF+  K R ++ WTA+ISAY   G    AV+LF
Sbjct: 339 KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALF 398

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           +++ ++G+ PD + F   L+AC+H+GL+++    F  M+  Y I P +EH ACMV +L R
Sbjct: 399 SKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGR 458

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A ++ EA  F+  M ++P+ +VWGALL    +  D ++G    D LF++ PE +G Y+++
Sbjct: 459 AGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW+E   +R  MK  GL K PG S +E +  + +F+  D S  +S++IY  L
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
           + L+  M+E GYV      L +VEEE
Sbjct: 579 DVLVKKMKELGYVPDSESALHDVEEE 604



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 151/376 (40%), Gaps = 60/376 (15%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           TV  + Q      DI     VH+ +I   ++ +  +   L+  YA    +  AR + DE+
Sbjct: 41  TVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEI 100

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            +++ +  + +I  Y+ +GF  + + +F  M                             
Sbjct: 101 PERNVIIINVMIRSYVNNGFYGEGVKVFGTM----------------------------- 131

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
                 VRP+  T   +    S    +  G++IHG A K      ++V   ++  Y K G
Sbjct: 132 --CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCG 189

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           FL  A+ V D    R ++ W +++  YA +     A+ +  EM +  I  D  T  ++L 
Sbjct: 190 FLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249

Query: 284 ACAHSGLVDKAW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---- 337
           A +++   +  +  D+F  M      + S+  +  M+GV  +     EA E  S+M    
Sbjct: 250 AVSNTTTENVMYVKDMFFKMG-----KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG 304

Query: 338 ---------PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
                     V P+     AL  G  I G +E  K + + L E       N +I  ++Y+
Sbjct: 305 FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE-------NALI--DMYA 355

Query: 389 QAGRWDEADRVREQMK 404
           + G  ++A  V E MK
Sbjct: 356 KCGCLEKARDVFENMK 371


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 276/506 (54%), Gaps = 43/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+++  N MI  Y   GFY E   +F  M    V RPD  T   VL+AC  S  IV 
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV-RPDHYTFPCVLKACSCSGTIVI 158

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +  +   L++ N L+ MY KCG L  AR +LDEMS +D VS+++++ GY  
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218

Query: 121 HGFVEKAM-------------------------------------DLFQVMKRPGLSTWN 143
           +   + A+                                     D+F  M +  L +WN
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWN 278

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I   ++N      ++L   M+A G  P+AV+I+S+       S L  GK+IHGY  + 
Sbjct: 279 VMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK 338

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  A+ID YAK G L  A+ VF+  K R ++ WTA+ISAY   G    AV+LF
Sbjct: 339 KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALF 398

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           +++ ++G+ PD + F   L+AC+H+GL+++    F  M+  Y I P +EH ACMV +L R
Sbjct: 399 SKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGR 458

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A ++ EA  F+  M ++P+ +VWGALL    +  D ++G    D LF++ PE +G Y+++
Sbjct: 459 AGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW+E   +R  MK  GL K PG S +E +  + +F+  D S  +S++IY  L
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
           + L+  M+E GYV      L +VEEE
Sbjct: 579 DVLVKKMKELGYVPDSESALHDVEEE 604



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 151/376 (40%), Gaps = 60/376 (15%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           TV  + Q      DI     VH+ +I   ++ +  +   L+  YA    +  AR + DE+
Sbjct: 41  TVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEI 100

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            +++ +  + +I  Y+ +GF  + + +F  M                             
Sbjct: 101 PERNVIIINVMIRSYVNNGFYGEGVKVFGTM----------------------------- 131

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
                 VRP+  T   +    S    +  G++IHG A K      ++V   ++  Y K G
Sbjct: 132 --CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCG 189

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           FL  A+ V D    R ++ W +++  YA +     A+ +  EM +  I  D  T  ++L 
Sbjct: 190 FLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249

Query: 284 ACAHSGLVDKAW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---- 337
           A +++   +  +  D+F  M      + S+  +  M+GV  +     EA E  S+M    
Sbjct: 250 AVSNTTTENVMYVKDMFFKMG-----KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG 304

Query: 338 ---------PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
                     V P+     AL  G  I G +E  K + + L E       N +I  ++Y+
Sbjct: 305 FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE-------NALI--DMYA 355

Query: 389 QAGRWDEADRVREQMK 404
           + G  ++A  V E MK
Sbjct: 356 KCGCLEKARDVFENMK 371


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 272/536 (50%), Gaps = 72/536 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D + WN+MI+GY +   Y E   +FR+++N    R D  T++ +L A  +  ++  
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG--- 117
           GM++H+   ++      ++    I +Y+KCG +    AL  E    D V+Y+A+I G   
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 118 ---------------------------------------YMVHGF--------------- 123
                                                  Y +HG+               
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359

Query: 124 ----------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
                     +E A  LF       L +WNA+ISG  QN   E  + L REMQ S   PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            VTI+ I S  +    L  GK +H       ++ +IYV+TA+I  YAK G +  A+R+FD
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               ++ + W  +IS Y  HG   +A+++F EMLN+GI P PVTF  VL AC+H+GLV +
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
             +IFN+M  +YG +PSV+HYACMV +L RA  +  A +F+  M ++P + VW  LL   
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I  D  L + V + LFE++P+N G +++++N++S    + +A  VR+  K+  LAK PG
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            + IE       F + D S  + ++IY  LE+L G MRE GY     + L +VEEE
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEE 715



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 43/364 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D+  +N ++ G+S         ++F  +  S  L+P+  T    + A     D   
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   +      +L + + ++ MY K   ++ AR + D M +KD + ++ +ISGY  
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +    +++ +F+                           DL+ E   S  R +  T+  I
Sbjct: 198 NEMYVESIQVFR---------------------------DLINE---SCTRLDTTTLLDI 227

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L+ G +IH  A K     + YV T  I  Y+K G +     +F  F+   +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDI 287

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + + A+I  Y ++G+   ++SLF E++ +G +    T  +++    H  L+        A
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI-------YA 340

Query: 301 MSGQYGIQPSVEHYA----CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           + G Y ++ +   +A     +  V S+   I  A +   + P K S   W A++ G + +
Sbjct: 341 IHG-YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEK-SLPSWNAMISGYTQN 398

Query: 357 GDVE 360
           G  E
Sbjct: 399 GLTE 402



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSI 180
           G +  A D+F  ++RP +  +N ++ G   N    + L +   ++ S  ++PN+ T +  
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFA 125

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S F + + G+ IHG AV +  D  + + + I+  Y K   +  A++VFDR   +  
Sbjct: 126 ISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I+W  +IS Y  +    +++ +F +++N    + D  T   +L A A    +     I +
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-H 244

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ + G           + + S+  +I   +    +   KP    + A+++G + +G+ 
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGET 303

Query: 360 EL 361
           EL
Sbjct: 304 EL 305


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 169/472 (35%), Positives = 278/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R IVSWN++IAGY+Q G        F  ML++  + PD  TV SVL AC     +  
Sbjct: 439 MVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKM 498

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G ++H++++ + +     I NALI  YAK GS++ AR ++D+  ++D + +S++A++ GY
Sbjct: 499 GKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGY 558

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G  ++A ++F +M    +  W A+I G  QN +++  ++L R M   G  PN+ T++
Sbjct: 559 VKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLA 618

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S  +  + L  GK+IH  A+++  ++++ V+ AII  YA++G +  A+RVFD+   R
Sbjct: 619 AVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWR 678

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              I WT++I A A HG   +AV LF EM+  G++PD +T+  VLSACAH+G VDK    
Sbjct: 679 KETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRY 738

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +  M  ++GI P + HYACMV + +RA  ++EA EF+ +MPV P   VWG+LL    +  
Sbjct: 739 YEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRK 798

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + +L +     L  I+P N+G Y  +AN+YS  GRW++A R+ +  K+ G+ K  G SW 
Sbjct: 799 NADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWT 858

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
              G +  F A D    + + IY     +   +++ G+V     +L +V++E
Sbjct: 859 HVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDE 910



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 42/456 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSW  MI G ++ G + +    F +M+ S    P   T+ +VL +C        
Sbjct: 307 MPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV-SEGFAPSQFTLTNVLSSCAAMEACGV 365

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH FV++  +   + + N+++ MY KCG  + ARA+ + M  +   S++ ++S Y  
Sbjct: 366 GRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTH 425

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV-REMQASGVRPNAVTISS 179
            G +E A+ +F+ M    + +WN +I+G  QN      L    R + AS + P+A T++S
Sbjct: 426 QGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTS 485

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR--------- 230
           + S  ++   LK GK++H Y ++     +  +  A+I TYAK+G +  A+R         
Sbjct: 486 VLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVAD 545

Query: 231 ------------------------VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
                                   +FD    R +I WTA+I  Y  +G   +A+ LF  M
Sbjct: 546 LNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSM 605

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           +  G +P+  T  AVLSACA    +D    I +  + +   + SV     ++ V +R+  
Sbjct: 606 ILIGPEPNSHTLAAVLSACASLAYLDYGKQI-HCKAIRSLQEQSVSVSNAIITVYARSGS 664

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMA 384
           +  A     ++  +     W +++   +  G  E    + + +    ++P++   Y+ + 
Sbjct: 665 VPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHI-TYVGVL 723

Query: 385 NLYSQAGRWDEADRVREQMK-ESGLAKIPGRSWIEC 419
           +  + AG  D+  R  EQM+ E G+  +P  S   C
Sbjct: 724 SACAHAGFVDKGKRYYEQMQNEHGI--VPQMSHYAC 757



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 151/329 (45%), Gaps = 13/329 (3%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG----SLDYARALLDEM 103
           +LQ C  + +   G  +H   +++ + +  ++CN L+  YA  G        AR L D++
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 104 --SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
             + ++  ++++++S Y   G +  A  +F  M      +W  +I GL ++ R    +  
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
             +M + G  P+  T++++ S  +       G+++H + VK      + VA +++  Y K
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGK 394

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G    A+ VF+R + RS+  W  ++S Y   G    AVS+F  M+   I    V++  +
Sbjct: 395 CGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTI 450

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMP 338
           ++    +GL   A   F+ M     ++P       ++   +  R +    +   ++ +  
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 339 VKPSAKVWGALLYGASISGDVELGKFVCD 367
           +  S+++  AL+   + SG VE  + + D
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMD 539


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/432 (36%), Positives = 272/432 (62%), Gaps = 5/432 (1%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           ++P+  T+ +V++AC   + +  G + HN++I+   + D+ +  AL+ MYA+CGSL+ A 
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + D+MS++   +++A+I+G+  +  ++KA+ LF  M    + +W AVI+G  QN   + 
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L++  +M+ +G++ +   + S+ S  +  + L+ G++ H Y V++ +  +I V +A++D
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YAK+G +  A +VFD+   R+ + W +II+  A HG  + AV LF +ML  GI+P+ ++
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           F  VLSAC+H+GLV++    FN M+  YGI P V HY CM+ +L RA  + EA  F++ M
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
           PV+P   VWGALL    I G+ EL K + +HL  +E +  G Y++++N+Y+ AG+WD+A 
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 398 RVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV- 456
           +VR+ MK+ G+ K PG SWIE    + +FVA +TS  + ++I+  LE L   M+  GYV 
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVP 425

Query: 457 ----LLDEVEEE 464
               +L +VE++
Sbjct: 426 NKNFVLQDVEDD 437



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 34/274 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD+VSW ++IAGY+Q G+ +E   +F +M  +  ++ D   + SVL AC   + +  
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTG-MKSDRFIMGSVLSACADLAALEL 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H +V++S   +D+ + +AL+ MYAK GS++ A  + D+M  ++EVS+++II+G   
Sbjct: 161 GRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQ 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A+ LF+                               +M  +G++PN ++   +
Sbjct: 221 HGRGNDAVLLFE-------------------------------QMLQAGIKPNEISFVGV 249

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  SH   +  G+       +N     ++   T +ID   + G L  A+   +      
Sbjct: 250 LSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEP 309

Query: 240 LI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
            + +W A++ A   HG+   A  +   +L   +Q
Sbjct: 310 DVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQ 343



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 15/249 (6%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   GV+PN  T+S++    +  ++L+ GK+ H Y +K  ++ ++ V TA++  YA+ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A  VFD+   RS   W A+I+ +A + D  KA+ LF EM     + D V++TAV++ 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEM----SERDVVSWTAVIAG 116

Query: 285 CAHSGLVDKAWDIFN-----AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
            A +G  D++ ++FN      M     I  SV      +  L   R+      +V +   
Sbjct: 117 YAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFH---AYVVQSGF 173

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
                V  AL+   + SG +E    V D + +   E + N II     +Q GR ++A  +
Sbjct: 174 ALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ-RNEVSWNSIITG--CAQHGRGNDAVLL 230

Query: 400 REQMKESGL 408
            EQM ++G+
Sbjct: 231 FEQMLQAGI 239


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 267/469 (56%), Gaps = 44/469 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN++IAG ++ G YEE   + REM     L+PD  T+ SVL    ++ DI  
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREM-GGANLKPDSFTLSSVLPLIAENVDISR 257

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   I   +  D+++ ++LI MYAKC  +  +  +   ++++D +S          
Sbjct: 258 GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGIS---------- 307

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G VQN   +  L   R+M  + ++P + + SSI
Sbjct: 308 ---------------------WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSI 346

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H + L  GK++HGY  +N +D NI++A++++D YAK G +  A+++FDR + R +
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I   A HG A  A+ LF +M   GI+       AVL+AC+H GLVD+AW  FN+
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNS 459

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI P VEHYA +  +L RA R+ EA +F+  M + P+  +W  LL    +  +++
Sbjct: 460 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNID 519

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + + V + + E++P NTG YI++AN+YS A RW EA + R  M+  G+ K P  SWIE  
Sbjct: 520 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 579

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F+A D S    E+I   +E L+ LM +EGYV     +  +VEEE
Sbjct: 580 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEE 628



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 182/359 (50%), Gaps = 18/359 (5%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           ++W S+I  Y+  G   +    F  ML S  L PD     SVL++C    D+  G  +H 
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDY-------ARALLDEMSDKDE-VSYSAIISGY 118
           ++I   +  DL+  NAL+ MY+K   L+        A  + DEM+++   V   +++S  
Sbjct: 131 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSE- 189

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                 +    +F++M    L +WN +I+G  +N  +E  L ++REM  + ++P++ T+S
Sbjct: 190 ------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLS 243

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+  L +   ++  GKEIHG +++   D +IYVA+++ID YAK   +  + RVF     R
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             I W +II+    +G   + +  F +ML   I+P   +F++++ ACAH   +     + 
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             ++ + G   ++   + +V + ++   I  A +   +M ++     W A++ G ++ G
Sbjct: 364 GYIT-RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHG 420



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y+    LH + R+F+       + W ++I  Y +HG   +++  F  ML +G+ PD   F
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 279 TAVLSACA 286
            +VL +CA
Sbjct: 110 PSVLKSCA 117


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 288/491 (58%), Gaps = 40/491 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ +WN++++G S+ G   E   +   ML    LRPD  TV S+L++   +  +  GME+
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQG-LRPDATTVSSLLKSVANTGLLRHGMEI 314

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H F + + ++ D++   AL+ MYAKCG LD A+ +LD +  ++  +++++++GY   G  
Sbjct: 315 HCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRF 374

Query: 125 EKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + A++L ++MK+    P ++TWN +I+G   N +    + L+R+++A+GV PN V+ +S+
Sbjct: 375 DIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSL 434

Query: 181 FS------------LFSH-----------------------FSNLKGGKEIHGYAVKNRY 205
            S             F H                        +  K GKE+H +A++  Y
Sbjct: 435 ISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAY 494

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D ++ V+TA+ID Y+K G L  A+ +F+  + ++L++  A+++  A HG   +A+ LF++
Sbjct: 495 DCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHD 554

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M N+G++PD +TFTA+L+AC   GLV + W+ F++M  +YG++P+ E+YACMV +L+R  
Sbjct: 555 MWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLARCG 614

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            + EA +F+ + P+ P A  WGALL G SI G++ L +    +LF +EP N+ NY++M N
Sbjct: 615 YLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLLMMN 674

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           LY     +DEA+ ++  MK  G+   PG SWI+   G+  F        ++ +IY  L R
Sbjct: 675 LYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIR 734

Query: 446 LLGLMREEGYV 456
           L+  +++ GYV
Sbjct: 735 LVFQIKKAGYV 745



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 202/415 (48%), Gaps = 14/415 (3%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V WN  +A  ++   ++E  A+FREM    V   DG T   VL ACG++  +  G  
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGV-PADGYTCARVLHACGRAGALREGRA 177

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH + ++  +     +   L GMYA+   +  A  +LD M     V ++A+++     G 
Sbjct: 178 VHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGL 237

Query: 124 VEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           V+ A++L   M R    P ++TWN V+SG  ++ R    L +V  M   G+RP+A T+SS
Sbjct: 238 VDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSS 297

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    ++   L+ G EIH + ++N+ + ++Y  TA++D YAK G L  AQ+V D  + R+
Sbjct: 298 LLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN 357

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W ++++ YA  G    A+ L   M  N + PD  T+  +++  + +G   +A  +  
Sbjct: 358 LTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLR 417

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASIS 356
            +    G+ P+V  +  ++          ++  F  +M    V+PS      LL   +  
Sbjct: 418 QIKAA-GVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGL 476

Query: 357 GDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
              + GK +  H F +      + ++   + ++YS+ G    A  + E +++  L
Sbjct: 477 ALQKKGKEL--HCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 529



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 21/257 (8%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKG-----------GKEIHGYAVKNRYDRNIYVATAII 216
           +GV P +  +  + SL    ++L G             ++H  AV+    R+  V  A++
Sbjct: 37  TGVPPYSAGV--LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALV 94

Query: 217 DTYAKTGFLHGAQRVFDRFK---GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           D  A+ G      R+         +  ++W   ++  A   +  +A+++F EM   G+  
Sbjct: 95  DLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPA 154

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFN-AMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           D  T   VL AC  +G + +   +   A+       P V  +  + G+ +    ++ AT 
Sbjct: 155 DGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGF--LAGMYAENADVAAATR 212

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAG 391
            +  M    S   W A++   +  G V+    +   +    PE N   +  + +  S+ G
Sbjct: 213 VLDAMGAG-SVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 271

Query: 392 RWDEADRVREQMKESGL 408
           R  EA  V   M + GL
Sbjct: 272 RDREALGVVASMLKQGL 288


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 288/491 (58%), Gaps = 40/491 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ +WN++++G S+ G   E   +   ML    LRPD  TV S+L++   +  +  GME+
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQG-LRPDATTVSSLLKSVANTGLLRHGMEI 314

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H F + + ++ D++   AL+ MYAKCG LD A+ +LD +  ++  +++++++GY   G  
Sbjct: 315 HCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRF 374

Query: 125 EKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + A++L ++MK+    P ++TWN +I+G   N +    + L+R+++A+GV PN V+ +S+
Sbjct: 375 DIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSL 434

Query: 181 FS------------LFSH-----------------------FSNLKGGKEIHGYAVKNRY 205
            S             F H                        +  K GKE+H +A++  Y
Sbjct: 435 ISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAY 494

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D ++ V+TA+ID Y+K G L  A+ +F+  + ++L++  A+++  A HG   +A+ LF++
Sbjct: 495 DCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHD 554

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M N+G++PD +TFTA+L+AC   GLV + W+ F++M  +YG++P+ E+YACMV +L+R  
Sbjct: 555 MWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLARCG 614

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            + EA +F+ + P+ P A  WGALL G SI G++ L +    +LF +EP N+ NY++M N
Sbjct: 615 YLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLLMMN 674

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           LY     +DEA+ ++  MK  G+   PG SWI+   G+  F        ++ +IY  L R
Sbjct: 675 LYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIR 734

Query: 446 LLGLMREEGYV 456
           L+  +++ GYV
Sbjct: 735 LVFQIKKAGYV 745



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 202/415 (48%), Gaps = 14/415 (3%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V WN  +A  ++   ++E  A+FREM    V   DG T   VL ACG++  +  G  
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGV-PADGYTCARVLHACGRAGALREGRA 177

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH + ++  +     +   L GMYA+   +  A  +LD M     V ++A+++     G 
Sbjct: 178 VHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGL 237

Query: 124 VEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           V+ A++L   M R    P ++TWN V+SG  ++ R    L +V  M   G+RP+A T+SS
Sbjct: 238 VDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSS 297

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    ++   L+ G EIH + ++N+ + ++Y  TA++D YAK G L  AQ+V D  + R+
Sbjct: 298 LLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN 357

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W ++++ YA  G    A+ L   M  N + PD  T+  +++  + +G   +A  +  
Sbjct: 358 LTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLR 417

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASIS 356
            +    G+ P+V  +  ++          ++  F  +M    V+PS      LL   +  
Sbjct: 418 QIKAA-GVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGL 476

Query: 357 GDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
              + GK +  H F +      + ++   + ++YS+ G    A  + E +++  L
Sbjct: 477 ALQKKGKEL--HCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 529



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 21/257 (8%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKG-----------GKEIHGYAVKNRYDRNIYVATAII 216
           +GV P +  +  + SL    ++L G             ++H  AV+    R+  V  A++
Sbjct: 37  TGVPPYSAGV--LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALV 94

Query: 217 DTYAKTGFLHGAQRVFDRFK---GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           D  A+ G      R+         +  ++W   ++  A   +  +A+++F EM   G+  
Sbjct: 95  DLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPA 154

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFN-AMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           D  T   VL AC  +G + +   +   A+       P V  +  + G+ +    ++ AT 
Sbjct: 155 DGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGF--LAGMYAENADVAAATR 212

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAG 391
            +  M    S   W A++   +  G V+    +   +    PE N   +  + +  S+ G
Sbjct: 213 VLDAMGAG-SVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 271

Query: 392 RWDEADRVREQMKESGL 408
           R  EA  V   M + GL
Sbjct: 272 RDREALGVVASMLKQGL 288


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 269/468 (57%), Gaps = 36/468 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R++VSWN+MI GY+Q G  EE  A F +ML+  V  P  V+++  L AC    D+  
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGV-EPTNVSMMGALHACANLGDLER 362

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  + E  I  D+ + N+LI MY+KC  +D A ++                     
Sbjct: 363 GRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASV--------------------- 401

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                     F  +K   + TWNA+I G  QN      L+L  EMQ+  ++P++ T+ S+
Sbjct: 402 ----------FGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSV 451

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S  +  K IHG A++   D+N++V TA+IDT+AK G +  A+++FD  + R +
Sbjct: 452 ITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHV 511

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y  +G   +A+ LFNEM N  ++P+ +TF +V++AC+HSGLV++    F +
Sbjct: 512 ITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFES 571

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P+++HY  MV +L RA R+ +A +F+  MPVKP   V GA+L    I  +VE
Sbjct: 572 MKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVE 631

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   D LF+++P++ G ++++AN+Y+ A  WD+  RVR  M++ G+ K PG S +E  
Sbjct: 632 LGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELR 691

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL----LDEVEEE 464
             + +F +  T+  +S++IY  LE L   M+  GYV     + +VEE+
Sbjct: 692 NEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSIHDVEED 739



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 180/373 (48%), Gaps = 38/373 (10%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V +++M+ GY++     +    +  M    V+ P       +LQ  G++ D+  G E+H 
Sbjct: 108 VLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM-PVVYDFTYLLQLSGENLDLRRGREIHG 166

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            VI +  + +L+   A++ +YAKC                                 +E 
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQ-------------------------------IED 195

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F+ M +  L +WN V++G  QN      + +V +MQ +G +P+++T+ S+    + 
Sbjct: 196 AYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVAD 255

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G+ IHGYA +  ++  + VATA++DTY K G +  A+ VF     R+++ W  +
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTM 315

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS-GQY 305
           I  YA +G++ +A + F +ML+ G++P  V+    L ACA+ G +++   +   +   + 
Sbjct: 316 IDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKI 375

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGK 363
           G   SV +   ++ + S+ +R+  A      +  K +   W A++ G + +G V   L  
Sbjct: 376 GFDVSVMN--SLISMYSKCKRVDIAASVFGNLKHK-TVVTWNAMILGYAQNGCVNEALNL 432

Query: 364 FVCDHLFEIEPEN 376
           F      +I+P++
Sbjct: 433 FCEMQSHDIKPDS 445



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 192/442 (43%), Gaps = 75/442 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+++AGY+Q GF      +  +M  +   +PD +T+VSVL A      +  
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQ-KPDSITLVSVLPAVADLKALRI 261

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +   +  +  + +  A++  Y KCGS+  AR +   MS ++ VS          
Sbjct: 262 GRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVS---------- 311

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I G  QN   E       +M   GV P  V++   
Sbjct: 312 ---------------------WNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGA 350

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++  +L+ G+ +H    + +   ++ V  ++I  Y+K   +  A  VF   K +++
Sbjct: 351 LHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTV 410

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-W---- 295
           + W A+I  YA +G  ++A++LF EM ++ I+PD  T  +V++A A   +  +A W    
Sbjct: 411 VTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGL 470

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------SEA 330
            I   M     +  ++       G +  AR++                          EA
Sbjct: 471 AIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREA 530

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------NYI 381
            +  ++M    VKP+   + +++   S SG VE G +     FE   EN G      +Y 
Sbjct: 531 LDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMY----YFESMKENYGLEPTMDHYG 586

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            M +L  +AGR D+A +  + M
Sbjct: 587 AMVDLLGRAGRLDDAWKFIQDM 608



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 88/175 (50%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +IS +     + +A  +F+ ++      ++ ++ G  +N+     +     M+   V 
Sbjct: 80  TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P     + +  L     +L+ G+EIHG  + N +  N++  TA+++ YAK   +  A ++
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM 199

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           F+R   R L+ W  +++ YA +G A +AV +  +M   G +PD +T  +VL A A
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVA 254



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 75/170 (44%), Gaps = 2/170 (1%)

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           ++LK   +I    +KN +       T +I  + K   +  A RVF+  + +  +++  ++
Sbjct: 55  TSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTML 114

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
             YA +     AV  +  M  + + P    FT +L     +  + +  +I + M    G 
Sbjct: 115 KGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREI-HGMVITNGF 173

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           Q ++     +V + ++ R+I +A +   +MP +     W  ++ G + +G
Sbjct: 174 QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVS-WNTVVAGYAQNG 222


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 258/455 (56%), Gaps = 1/455 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+R +VSWNSMI GYS+ G  EE   +FREM     L PD  T+V +L    +  +   
Sbjct: 195 ISERTLVSWNSMINGYSKMGRSEEAVLMFREM-QEVGLEPDVFTLVGLLSVSTKHGNFDL 253

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ + I++D  + NAL+ MYAKCG+L  A+++ D+M DKD VS++ +I+ Y  
Sbjct: 254 GRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYAN 313

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG ++ A++ F  M    + +WN++I   VQ   +   +DL   M  SGV  N  T+ +I
Sbjct: 314 HGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAI 373

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  SH  +L  GK+ H Y   N    +  +  AIID YAK G L  A  VF     ++ 
Sbjct: 374 LSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNA 433

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II A A HG   +A+ +F +M  +G+ PD +TFT +LSAC+HSGLVD     F  
Sbjct: 434 VSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEI 493

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI P VEHYACMV +L R   + EA   + KMPVKP   VW ALL      G++ 
Sbjct: 494 MNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLA 553

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK +   L E+   N+G Y++++N+YS++ RWD+   + + + ++G+ K    S+IE  
Sbjct: 554 IGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEID 613

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G    F+  D     S  IY +L +L+  ++  GY
Sbjct: 614 GCCYQFMVDDKRHGASTSIYSMLGQLMDHLKSAGY 648



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 197/443 (44%), Gaps = 62/443 (13%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N +I GYS      +   L+R M+   +L P+  T+  VL+AC   S    G+ VH   
Sbjct: 102 FNHLIKGYSNSSDPIKSLLLYRRMVCDGIL-PNQFTIPFVLKACAAKSCYWLGVCVHAQS 160

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +  +     + NA++ +Y  CG +  AR + D++S++  VS++++I+GY   G  E+A+
Sbjct: 161 FKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAV 220

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSIFSLF 184
            +F+ M+  GL      + GL+  +      DL R     M  +G+  +++  +++  ++
Sbjct: 221 LMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMY 280

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   NLK  K +         D+++   T +I+ YA  G +  A   F++  G++++ W 
Sbjct: 281 AKCGNLKCAKSV----FDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWN 336

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----------------- 287
           +II  +   G  ++AV LF  M ++G+  +  T  A+LS+C+H                 
Sbjct: 337 SIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDN 396

Query: 288 ------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
                              G +  A D+F  M  +  +  +V     ++G L+      E
Sbjct: 397 NITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNV-----IIGALALHGYGKE 451

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------NY 380
           A E   KM    V P    +  LL   S SG V+ G+    H FEI     G      +Y
Sbjct: 452 AIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ----HYFEIMNLTFGISPDVEHY 507

Query: 381 IIMANLYSQAGRWDEADRVREQM 403
             M +L  + G   EA  + ++M
Sbjct: 508 ACMVDLLGRRGLLGEAISLIKKM 530



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 31/255 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  LF  + +P    +N +I G   ++     L L R M   G+ PN  TI  +    + 
Sbjct: 87  AHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAA 146

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            S    G  +H  + K     +  V  AI++ Y   G +  A+RVFD    R+L+ W ++
Sbjct: 147 KSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSM 206

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-------- 298
           I+ Y+  G + +AV +F EM   G++PD  T   +LS     G  D    +         
Sbjct: 207 INGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGI 266

Query: 299 -------NAMSGQYG---------------IQPSVEHYACMVGVLSRARRISEATEFVSK 336
                  NA+   Y                +   V  + CM+   +    I  A EF ++
Sbjct: 267 EIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQ 326

Query: 337 MPVKPSAKVWGALLY 351
           MP K     W ++++
Sbjct: 327 MPGKNVVS-WNSIIW 340



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 36/263 (13%)

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T  ++  L     +LK  K +H   + +     +     ++ +  +   L  A ++FD+ 
Sbjct: 35  THQTLHYLIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQI 94

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GL 290
              +  ++  +I  Y+   D  K++ L+  M+ +GI P+  T   VL ACA       G+
Sbjct: 95  PQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGV 154

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR----ISEATEF--------VSKM- 337
              A      M     +Q ++ +     G+++ ARR    ISE T           SKM 
Sbjct: 155 CVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMG 214

Query: 338 ---------------PVKPSAKVWGALLYGASISGDVELGKFVCDHLF--EIEPENTGNY 380
                           ++P       LL  ++  G+ +LG+FV  H+    IE ++    
Sbjct: 215 RSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTN 274

Query: 381 IIMANLYSQAGRWDEADRVREQM 403
            +M ++Y++ G    A  V +QM
Sbjct: 275 ALM-DMYAKCGNLKCAKSVFDQM 296


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/491 (36%), Positives = 281/491 (57%), Gaps = 47/491 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM---LNSPVLRPDGVTVVSVLQACGQSSD 57
           M+ +D+V+WN ++AGY+Q G  E  KAL  EM   +    LR D VT+ ++L     + D
Sbjct: 317 MAVKDVVTWNLVVAGYAQFGMVE--KAL--EMCCVMREEGLRFDCVTLSALLAVAADTRD 372

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD---------- 107
           +V GM+ H + +++  + D+ + + +I MYAKCG +D AR +   +  KD          
Sbjct: 373 LVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAA 432

Query: 108 -------------------------EVSYSAIISGYMVHGFVEKAMDLFQVMKR----PG 138
                                     VS++++I G+  +G V +A ++F  M      P 
Sbjct: 433 CAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPN 492

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           L TW  ++SGLVQN      + + REMQ  G+RPN+++I+S  S  +  + LK G+ IHG
Sbjct: 493 LITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHG 552

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
           Y ++    ++I++ T+I+D YAK G L GA+ VF     + L ++ A+ISAYA+HG A +
Sbjct: 553 YVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQARE 612

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           A+ LF +M   GI PD +T T+VLSAC+H GL+ +   +F  M  +  ++PS EHY C+V
Sbjct: 613 ALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLV 672

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
            +L+   ++ EA   +  MP  P A + G+LL     + D+EL  ++   L +++P+N+G
Sbjct: 673 KLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSG 732

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQ 438
           NY+ ++N+Y+  G+WD+   +R  MKE GL KIPG SWIE    L  F+A D S  K+E+
Sbjct: 733 NYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPKTEE 792

Query: 439 IYLILERLLGL 449
           IY+ L+ LLG 
Sbjct: 793 IYVTLD-LLGF 802



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 200/408 (49%), Gaps = 47/408 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSV-----LQACGQS 55
           MS+R+ V+WNSM+  Y+Q G  +E   +FREM      R  GV V  V       AC  S
Sbjct: 216 MSERNDVTWNSMVVTYAQNGMNQEAIRVFREM------RLQGVEVTLVALSGFFTACANS 269

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +  G + H   +   +++D  + ++++  Y K G ++ A  +   M+ KD V+++ ++
Sbjct: 270 EAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVV 329

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           +GY   G VEKA+++  VM+  GL                               R + V
Sbjct: 330 AGYAQFGMVEKALEMCCVMREEGL-------------------------------RFDCV 358

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+S++ ++ +   +L  G + H Y VKN ++ ++ V++ IID YAK G +  A+RVF   
Sbjct: 359 TLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCV 418

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + + +++W  +++A A  G + +A+ LF +M    + P+ V++ +++     +G V +A 
Sbjct: 419 RKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEAR 478

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYG 352
           ++F  M    G+ P++  +  M+  L +    S A     +M    ++P++    + L G
Sbjct: 479 NMFAEMCSS-GVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSG 537

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYII-MANLYSQAGRWDEADRV 399
            +    ++ G+ +  ++   +   + + I  + ++Y++ G  D A  V
Sbjct: 538 CTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCV 585



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 186/412 (45%), Gaps = 48/412 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++ SW ++I  +++ GF EE  ALF  + +    L PD   + +VL+ACG    + FG  
Sbjct: 118 NVFSWAAIIGLHTRTGFCEE--ALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKG 175

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH FV+++  +K  +++  +L+ MY KCG+++ A  + DEMS++++V             
Sbjct: 176 VHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDV------------- 222

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             TWN+++    QN  ++  + + REM+  GV    V +S  F+
Sbjct: 223 ------------------TWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFT 264

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++   +  G++ HG AV    + +  + ++I++ Y K G +  A+ VF     + ++ 
Sbjct: 265 ACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVT 324

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDI 297
           W  +++ YA  G   KA+ +   M   G++ D VT +A+L+  A +     G+   A+ +
Sbjct: 325 WNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCV 384

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            N   G   +   +       G +  ARR+            K    +W  +L   +  G
Sbjct: 385 KNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVR-------KKDIVLWNTMLAACAEQG 437

Query: 358 -DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              E  K       E  P N  ++  +   + + G+  EA  +  +M  SG+
Sbjct: 438 LSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGV 489



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 34/245 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           ++LQ C     +   +++H  VI+      ++ ++ + L+ +YAKCG+ + A  L  +  
Sbjct: 56  TLLQGCVYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSP 115

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
             +  S++AII  +   GF E+A  LF  +K                             
Sbjct: 116 SPNVFSWAAIIGLHTRTGFCEEA--LFGYIK----------------------------- 144

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTG 223
           MQ  G+ P+   + ++         ++ GK +H + VK       +YVAT+++D Y K G
Sbjct: 145 MQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCG 204

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +  A +VFD    R+ + W +++  YA +G   +A+ +F EM   G++   V  +   +
Sbjct: 205 AVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFT 264

Query: 284 ACAHS 288
           ACA+S
Sbjct: 265 ACANS 269


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 274/468 (58%), Gaps = 8/468 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++V+WN +++GY++   YEE K LF EM      + P+ VT+V +L AC +  D+V G  
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 64  VHN-FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++N ++ E  ++ +L + NALI M+A CG +D AR + DEM  +D +S+++I++G+    
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A   F  M      +W A+I G ++ NR + VL L R+MQ S V+P+  T+ SI +
Sbjct: 321 RIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILT 380

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H   L+ G+    Y  KN+   + ++  A+ID Y K G +  A+++F+  + +    
Sbjct: 381 ACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFT 440

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I   A +G   +A+++F+ ML   + PD +T+  V+ AC H GLV K    F+ M+
Sbjct: 441 WTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMA 500

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            Q+GI+P++ HY CMV +L RA  + EA E +  MPVKP++ VWG+LL    +  +V+L 
Sbjct: 501 VQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLA 560

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +   + + E+EPEN   Y+++ N+Y+   +W     VR+ M E G+ KIPG S +E +G 
Sbjct: 561 EMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGI 620

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           +  FVA D S  +S++IY  LE +   +   GY      V LD  EE+
Sbjct: 621 VYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEED 668



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 67/319 (21%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF- 67
           WN+MI GYS+    E   +L++ ML   + +PDG T   +L+   +   + +G  + N  
Sbjct: 103 WNTMIKGYSRINCSESGVSLYKLMLVHNI-KPDGFTFPFLLKGFTKDMALKYGKVLLNHA 161

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI   +  +L++    I +++ CG ++YAR + D M D  EV                  
Sbjct: 162 VIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD-MGDGWEV------------------ 202

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ--ASGVRPNAVTISSIFSLFS 185
                        TWN V+SG  +  R+E    L  EM+     V PN+VT+  + S  S
Sbjct: 203 ------------VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACS 250

Query: 186 HFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
              +L GGK I+   +K    + N+ +  A+ID +A  G +  A+ VFD  K R +I WT
Sbjct: 251 KLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWT 310

Query: 245 AIISAYA------------------------AHGDA-------SKAVSLFNEMLNNGIQP 273
           +I++ +A                        A  D         + ++LF +M  + ++P
Sbjct: 311 SIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKP 370

Query: 274 DPVTFTAVLSACAHSGLVD 292
           D  T  ++L+ACAH G ++
Sbjct: 371 DEFTMVSILTACAHLGALE 389



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 40/291 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW +MI GY +   ++E   LFR+M  S V +PD  T+VS+L AC     +  
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV-KPDEFTMVSILTACAHLGALEL 390

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G     ++ ++ IK D +I NALI MY KCG+++ A+ + +EM  KD+ +++A+I G   
Sbjct: 391 GEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLAN 450

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ +F  M                              ++AS V P+ +T   +
Sbjct: 451 NGHGEEALTMFSYM------------------------------LEAS-VTPDEITYIGV 479

Query: 181 FSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
               +H   +  GK      AV++    N+     ++D   + G L  A  V      + 
Sbjct: 480 MCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKP 539

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP----VTFTAVLSAC 285
           + I+W +++ A   H +   A    NE+L   ++P+     V    + +AC
Sbjct: 540 NSIVWGSLLGACRVHKNVQLAEMAANEILE--LEPENGAVYVLLCNIYAAC 588



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V  A  +F  + +P +  WN +I G  + N  E+ + L + M    ++P+  T   + 
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             F+    LK GK +  +AV + + D N++V    I  ++  G ++ A+++FD   G  +
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W  ++S Y       ++  LF EM      + P+ VT   +LSAC+    +     I+
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N    +  ++P++     ++ + +    +  A     +M  +     W +++ G + +  
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVIS-WTSIVTGFANTCR 321

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           ++L +   D + E    +  ++  M + Y +  R+ E   +   M+ S +
Sbjct: 322 IDLARKYFDQMPE---RDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV 368



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAK-TGFLHGAQRVFDR 234
           + S  SL    + +    +IH   +K     N +++   II    K +G ++ A++VFD 
Sbjct: 35  VKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDE 94

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS------ACAHS 288
               S+ IW  +I  Y+    +   VSL+  ML + I+PD  TF  +L       A  + 
Sbjct: 95  IPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYG 154

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            ++     I   +     +Q    H   + G+++ AR+I
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKI 193


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 286/491 (58%), Gaps = 40/491 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ +WN++++G S+ G   E   +   ML    LRPD  TV S+L++   +  +  GME+
Sbjct: 238 NVATWNTVLSGCSRHGRDREALGVVASMLKQG-LRPDATTVSSLLKSVANTGLLRHGMEI 296

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H F + + ++ D++   AL+ MYAKCG LD A+ + D +  ++  +++++++GY   G  
Sbjct: 297 HCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRF 356

Query: 125 EKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + A++L ++MK+    P ++TWN +I+G   N +    + L+R+++A+GV PN V+ +S+
Sbjct: 357 DIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSL 416

Query: 181 FS------------LFSH-----------------------FSNLKGGKEIHGYAVKNRY 205
            S             F H                        +  K GKE+H +A++  Y
Sbjct: 417 ISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAY 476

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D ++ V+TA+ID Y+K G L  A+ +F+  + ++L++  A+++  A HG   +A+ LF++
Sbjct: 477 DCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHD 536

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M N+G++PD +TFTA+L+AC   GLV + W+ F+ M  +YG++P+ E+YACMV +L+R  
Sbjct: 537 MWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLARCG 596

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            + EA +F+ + P+ P A  WGALL G SI G++ L +    +LF +EP N+ NY++M N
Sbjct: 597 YLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYLLMMN 656

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           LY     +DEA+ ++  MK  G+   PG SWI+   G+  F        ++ +IY  L R
Sbjct: 657 LYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIR 716

Query: 446 LLGLMREEGYV 456
           L+  +++ GYV
Sbjct: 717 LVFQIKKAGYV 727



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 193/415 (46%), Gaps = 32/415 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V WN  +A  ++   ++E  A+FREM    V R  G                     
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPRRRG-------------------RA 159

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH + ++  +     +   L GMYA+   +  A  +LD M     V ++A+++     G 
Sbjct: 160 VHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGL 219

Query: 124 VEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           V+ A++L   M R    P ++TWN V+SG  ++ R    L +V  M   G+RP+A T+SS
Sbjct: 220 VDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSS 279

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    ++   L+ G EIH + ++N+ + ++Y  TA++D YAK G L  AQ+VFD  + R+
Sbjct: 280 LLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRN 339

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W ++++ YA  G    A+ L   M  N + PD  T+  +++  + +G   +A  +  
Sbjct: 340 LTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLR 399

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASIS 356
            +    G+ P+V  +  ++          ++  F  +M    V+PS      LL   +  
Sbjct: 400 QIKAA-GVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGL 458

Query: 357 GDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
              + GK +  H F +      + ++   + ++YS+ G    A  + E +++  L
Sbjct: 459 ALQKKGKEL--HCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 511


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 170/477 (35%), Positives = 275/477 (57%), Gaps = 14/477 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R  VSWNS+I  Y Q G  +E   +F EM+   V  PD VT+ SV+ AC   S I  
Sbjct: 212 MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGV-EPDEVTLASVVSACATISAIKE 270

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G ++H  V++    + DL + NAL+ MYAKC  ++ AR + D M  +  VS ++++SGY 
Sbjct: 271 GQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYA 330

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V+ A  +F  M    + TWNA+I+G  QN  +E  L L R ++   V P   T  +
Sbjct: 331 KASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGN 390

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +  ++ ++L+ G++ H + +K+ +      D +++V  ++ID Y K G +    RVF 
Sbjct: 391 LLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQ 450

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               +  + W A+I  YA +G  +KA+ +F +ML +G  PD VT   VL AC+H+GL+D+
Sbjct: 451 HMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDE 510

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F +M+ Q+G+ P  +HY CMV +L RA  + EA   + +M ++P A VWG+LL   
Sbjct: 511 GRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAAC 570

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  +++LG++V   L E++PEN+G Y++++N+Y++   W    RVR+ M++ G+ K PG
Sbjct: 571 KVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPG 630

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL------LDEVEEE 464
            SWIE  G L  F+ KD    + ++IY++L  +L  M++ GYV        DE EE+
Sbjct: 631 CSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVPYVGSNEFDEDEEQ 687



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%)

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           L   +L  D      +L  C +S        VH  +I+S    + +I N LI +Y KCG 
Sbjct: 10  LKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGC 69

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           +D AR L D M +++  S+++II  +   GF++ A+ +F+ M +    +WN++ISG  Q+
Sbjct: 70  VDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQH 129

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
            R +  L    +M   G   N  +  S  S  +   +LK G +IH    ++ Y  ++Y+ 
Sbjct: 130 GRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMG 189

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           +A++D Y+K G +  AQ VFD    RS + W ++I+ Y  +G   +A+ +F EM+  G++
Sbjct: 190 SALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVE 249

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           PD VT  +V+SACA    + +   I   +      +  +     ++ + ++  RI+EA  
Sbjct: 250 PDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARI 309

Query: 333 FVSKMPVK 340
               MP++
Sbjct: 310 IFDMMPIR 317



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 199/443 (44%), Gaps = 106/443 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-------LNSPVL------RPDGVTVV- 46
           M +R+I SWNS+I  +++ GF ++   +F +M        NS +       R D   V  
Sbjct: 80  MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139

Query: 47  ----------------SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                           S L AC    D+  G ++H+ V  S+   D+++ +AL+ MY+KC
Sbjct: 140 AQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKC 199

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G ++YA+++ DEM+ +  VS++++I+ Y  +G V++A+ +F                   
Sbjct: 200 GRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFV------------------ 241

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNI 209
                        EM   GV P+ VT++S+ S  +  S +K G++IH   VK + +  ++
Sbjct: 242 -------------EMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDL 288

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            +  A++D YAK   ++ A+ +FD    RS++  T+++S YA    ASK V +   M +N
Sbjct: 289 ILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAK---ASK-VKVARYMFSN 344

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            +  D +T+ A+++ C  +G  ++A  +F                               
Sbjct: 345 MMVKDVITWNALIAGCTQNGENEEALILF------------------------------- 373

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGK----FVCDHLFEIEPENTGNYII--- 382
               + +  V P+   +G LL   +   D++LG+     V  H F  +     +  +   
Sbjct: 374 --RLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNS 431

Query: 383 MANLYSQAGRWDEADRVREQMKE 405
           + ++Y + G  +   RV + M E
Sbjct: 432 LIDMYMKCGSVENGCRVFQHMLE 454



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 109/254 (42%), Gaps = 17/254 (6%)

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           LV+ ++   +  ++   S + +  +   + +    +H   +K+ +    ++   +ID Y 
Sbjct: 6   LVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYG 65

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K G +  A+++FDR   R++  W +II A+   G    AV +F +M     Q D  ++ +
Sbjct: 66  KCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKM----PQVDQCSWNS 121

Query: 281 VLSACAHSGLVDKAWDIFNAMSG------QYGIQPSVEHYACMVGVLSRARRISEATEFV 334
           ++S     G  D+A   F  M G      +Y    ++   AC    L   +  S+    V
Sbjct: 122 MISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALS--AC--AGLQDLKLGSQIHSLV 177

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
            +        +  AL+   S  G VE  + V D +  +    + N +I    Y Q G  D
Sbjct: 178 YRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEM-TVRSRVSWNSLITC--YEQNGPVD 234

Query: 395 EADRVREQMKESGL 408
           EA ++  +M + G+
Sbjct: 235 EALKIFVEMIKCGV 248


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 265/456 (58%), Gaps = 1/456 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+V+WN MI GYSQ   Y+    L+ EM  S    PD + + +VL AC  + ++ +
Sbjct: 177 MSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGT-EPDAIILCTVLSACAHAGNLSY 235

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F+ ++  ++   I  +L+ MYA CG++  AR + D++  K  V  +A++SGY  
Sbjct: 236 GKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAK 295

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+ A  +F  M    L  W+A+ISG  ++ +    L L  EMQ   + P+ +T+ S+
Sbjct: 296 LGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSV 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++   L   K IH YA KN + R + +  A+ID YAK G L  A+ VF+    +++
Sbjct: 356 ISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNV 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+++I+A+A HGDA  A++LF+ M    I+P+ VTF  VL AC+H+GLV++    F++
Sbjct: 416 ISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSS 475

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I P  EHY CMV +  RA  + +A E +  MP  P+  +WG+L+      G++E
Sbjct: 476 MINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIE 535

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F    L E+EP++ G  ++++N+Y++  RWD+   VR+ MK  G++K    S IE +
Sbjct: 536 LGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVN 595

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F+  D    +S++IY  L+ ++  ++  GY 
Sbjct: 596 NEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYT 631



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 192/431 (44%), Gaps = 75/431 (17%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNS--PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           N ++  +S+G   E   +L+  +  +  P+   D  +   +L+A  + S +  G+E+H  
Sbjct: 84  NQLLRQFSRGPTPENTLSLYLHLRRNGFPL---DRFSFPPLLKAVSKLSALNLGLEIHGL 140

Query: 68  VIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
             +      D +I +ALI MYA CG +  AR L D+MS +D V+++ +I GY        
Sbjct: 141 ASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGY-------- 192

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                                   QN  ++ VL L  EM+ SG  P+A+ + ++ S  +H
Sbjct: 193 -----------------------SQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAH 229

Query: 187 FSNLKGGKEIHGYAVKNRYD----------------------RNIY---------VATAI 215
             NL  GK IH +   N +                       R +Y         V+TA+
Sbjct: 230 AGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAM 289

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           +  YAK G +  A+ +FDR   + L+ W+A+IS YA      +A+ LFNEM    I PD 
Sbjct: 290 LSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349

Query: 276 VTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
           +T  +V+SACA+ G LV   W   +  + + G   ++     ++ + ++   + +A E  
Sbjct: 350 ITMLSVISACANVGALVQAKW--IHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVF 407

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGR 392
             MP K +   W +++   ++ GD +    +   + E  IEP N   +I +    S AG 
Sbjct: 408 ENMPRK-NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEP-NGVTFIGVLYACSHAGL 465

Query: 393 WDEADRVREQM 403
            +E  +    M
Sbjct: 466 VEEGQKFFSSM 476


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 263/450 (58%), Gaps = 1/450 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALF-REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           RD+VSWN++I GY + G   E   LF R   +   +RPD VTV+  +  C Q  D+  G 
Sbjct: 185 RDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGK 244

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H FV    ++  + + NA++ MY KCGSL+ A ++ + +S++  VS++ +I G+   G
Sbjct: 245 RLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLG 304

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A  LF  M    +  WNA+++G VQN + +  + L  EMQ S V PN +T+ ++ S
Sbjct: 305 MMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLS 364

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S    L+ G  +H Y  +++   ++ + T+++D YAK G +  A  VF+    ++ + 
Sbjct: 365 ACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALT 424

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WT++I   A HG A +A+  F  M++ G+QPD +TF  VLSAC H+GLV+     F+ M 
Sbjct: 425 WTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMH 484

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +Y ++  ++HY+CM+ +L RA  + EA + V+ MP+ P A VWGAL +   + G++ LG
Sbjct: 485 AKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLG 544

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     L E++P ++G Y+++AN+Y++A    +AD+VR  M+  G+ K+PG S IE +G 
Sbjct: 545 EKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGV 604

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           +  F+ KD S   +  IY  L  +   MR 
Sbjct: 605 VHEFIVKDKSHLDTNAIYDCLHEITLQMRH 634



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 186/443 (41%), Gaps = 55/443 (12%)

Query: 23  EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82
             C  L+R +L+S   RPD +T   +++AC +     +G  V   V +     D+++ NA
Sbjct: 102 RHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNA 161

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK------R 136
            +  ++  G + +AR L DE   +D VS++ +I GY+  G   +A++LF  +       R
Sbjct: 162 AMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVR 221

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   T    +SG  Q    E    L   +   GVR     ++++  ++    +L    E+
Sbjct: 222 PDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSL----EL 277

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
                +   +R     T +I  +A+ G +  A+ +FD    R +  W A+++ Y  +   
Sbjct: 278 ANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQG 337

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--------------------------L 290
            +A++LF+EM  + + P+ +T   +LSAC+  G                          L
Sbjct: 338 KEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSL 397

Query: 291 VD---------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---P 338
           VD         KA  +FN +  Q  +      +  M+  L+      EA E+  +M    
Sbjct: 398 VDMYAKCGNIKKAICVFNEIPVQNALT-----WTSMICGLANHGHADEAIEYFQRMIDLG 452

Query: 339 VKPSAKVWGALLYGASISGDVELGK--FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           ++P    +  +L     +G VE G+  F   H          +Y  M +L  +AG  DEA
Sbjct: 453 LQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEA 512

Query: 397 DRVREQMKESGLAKIPGRSWIEC 419
           +++   M     A + G  +  C
Sbjct: 513 EQLVNAMPMDPDAVVWGALFFAC 535



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 127/259 (49%), Gaps = 34/259 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+  WN+++AGY Q    +E  ALF EM  S V  P+ +T+V++L AC Q   +  
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKV-DPNEITMVNLLSACSQLGALEM 374

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH+++    + + + +  +L+ MYAKCG++  A  + +E+  ++ ++++++I G   
Sbjct: 375 GMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLAN 434

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  ++A++ FQ M                        +DL       G++P+ +T   +
Sbjct: 435 HGHADEAIEYFQRM------------------------IDL-------GLQPDEITFIGV 463

Query: 181 FSLFSHFSNLKGGKEIHGYA-VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GR 238
            S   H   ++ G++       K   +R +   + +ID   + G L  A+++ +      
Sbjct: 464 LSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDP 523

Query: 239 SLIIWTAIISAYAAHGDAS 257
             ++W A+  A   HG+ +
Sbjct: 524 DAVVWGALFFACRMHGNIT 542


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 272/536 (50%), Gaps = 72/536 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D + WN+MI+GY +   Y E   +FR+++N    R D  T++ +L A  +  ++  
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG--- 117
           GM++H+   ++      ++    I +Y+KCG +  A  L  E    D V+Y+A+I G   
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTS 299

Query: 118 ---------------------------------------YMVHGF--------------- 123
                                                  Y +HG+               
Sbjct: 300 NGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTA 359

Query: 124 ----------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
                     +E A  LF       L +WNA+ISG  QN   E  + L REMQ S   PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPN 419

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            VTI+ I S  +    L  GK +H       ++ +IYV+TA+I  YAK G +  A+R+FD
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               ++ + W  +IS Y  HG   +A+++F+EMLN+GI P PVTF  VL AC+H+GLV +
Sbjct: 480 FMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKE 539

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
             +IFN+M  +YG +PSV+HYAC+V +L RA  +  A +F+  MP++P   VW  LL   
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGAC 599

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I  D  L + V + LFE++P+N G +++++N++S    + +A  VR+  K+  LAK PG
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            + IE       F + D S  + + I+  LE+L G MRE GY     + L +VEEE
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEE 715



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 152/361 (42%), Gaps = 37/361 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D+  +N ++ G+S         A+F  +  S  L+P+  T    + A     D   
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   I      +L + + ++ MY K   ++ AR + D M +KD + ++ +ISGY  
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +    +++ +F+                           DL+ E   S  R +  T+  I
Sbjct: 198 NEMYVESIQVFR---------------------------DLINE---SCTRLDTTTLLDI 227

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L+ G +IH  A K     + YV T  I  Y+K G +  A  +F  F+   +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDI 287

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN- 299
           + + A+I  Y ++G+   ++SLF E++ +G +    T  +++    H  L+   + I   
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI---YAIHGY 344

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           ++   +    SV     +  V S+   I  A +   + P K S   W A++ G + +G  
Sbjct: 345 SLKSNFLSHTSVS--TALTTVYSKLNEIESARKLFDESPEK-SLPSWNAMISGYTQNGLT 401

Query: 360 E 360
           E
Sbjct: 402 E 402



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGL-VQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           G +  A D+F  ++RP +  +N ++ G  V  + H ++       +++ ++PN+ T +  
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFA 125

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S F + + G  IHG A+ +  D  + + + I+  Y K   +  A++VFDR   +  
Sbjct: 126 ISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I+W  +IS Y  +    +++ +F +++N    + D  T   +L A A    +     I +
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-H 244

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ + G           + + S+  +I  A+    +   +P    + A+++G + +G+ 
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFR-RPDIVAYNAMIHGYTSNGET 303

Query: 360 EL 361
           EL
Sbjct: 304 EL 305


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 267/450 (59%), Gaps = 1/450 (0%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN++I+G+ +   +      F +M+ + V+ P  VT ++VL ACG+   I  GM+VH 
Sbjct: 89  VVWNALISGHRRSRQFRLSCCSFVDMVRTGVV-PTPVTYITVLSACGKDKYIWLGMQVHK 147

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            V+ S +  DL + NALI MYA+C  +D A  L + M  ++ VS++++ISG++  G V++
Sbjct: 148 CVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQ 207

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  LF  M      +W A+I G VQ  +    L++ REMQ S VR +  T+ S+ +  + 
Sbjct: 208 ARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQ 267

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G+    Y  ++    + +V  A++D Y+K G +  A  VF     R    WTA+
Sbjct: 268 LGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAV 327

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I   A +G   +A+++F  ML     PD VTF  VL+AC H+GLVDK  D F +M+G YG
Sbjct: 328 ILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYG 387

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           I P+V H+ C++ +L RA ++ EA E +  MP++P++ +WG LL    + G+ E+G+   
Sbjct: 388 IAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAA 447

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
           +HL E++ EN   YI+++NLY+++ RW++  R+R+ + E G+ K PG S IE +G +  F
Sbjct: 448 EHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEF 507

Query: 427 VAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +A D S   S++IY  L+++L  +++ GYV
Sbjct: 508 IAGDRSHPMSKEIYSKLDKVLTDLKDAGYV 537



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 6/203 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW +MI GY Q G + E   +FREM  S V R D  T+VSV+ AC Q   +  
Sbjct: 215 MPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKV-RADEFTMVSVVTACAQLGALET 273

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G     ++    IKMD ++ NAL+ MY+KCGS+  A  +  EM  +D+ +++A+I G  V
Sbjct: 274 GEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAV 333

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GVRPNAV 175
           +G  E+A+++F  M R   +       G++    H  ++D  R+   S     G+ PN +
Sbjct: 334 NGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVM 393

Query: 176 TISSIFSLFSHFSNLKGGKEIHG 198
               +  L      LK   E  G
Sbjct: 394 HFGCLIDLLGRAGKLKEALETIG 416



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 155/331 (46%), Gaps = 16/331 (4%)

Query: 39  RPDGVTVVSVLQACGQSSDI-VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           RPD  T   +L+A   +++    G  VH  V++  ++++  + ++L+ MYA  G    AR
Sbjct: 15  RPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVAR 74

Query: 98  ALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL----STWNAVISGLV 150
            LLD    +     V ++A+ISG+        +   F  M R G+     T+  V+S   
Sbjct: 75  TLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACG 134

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI-HGYAVKNRYDRNI 209
           ++      + + + + ASGV P+    +++  +++  S +    E+  G  V     RN 
Sbjct: 135 KDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEV-----RNT 189

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
              T++I  + + G +  A+ +FD    R  + WTA+I  Y   G   +A+ +F EM  +
Sbjct: 190 VSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFS 249

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            ++ D  T  +V++ACA  G ++        MS ++GI+        +V + S+   I +
Sbjct: 250 KVRADEFTMVSVVTACAQLGALETGEWARIYMS-RHGIKMDTFVGNALVDMYSKCGSIQQ 308

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           A     +M ++     W A++ G +++G  E
Sbjct: 309 ALGVFKEMYIRDKF-TWTAVILGLAVNGHGE 338



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 113/247 (45%), Gaps = 11/247 (4%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKG-GKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           M A G RP+A T   +    +  +     G  +H + VK   + N +VA++++  YA  G
Sbjct: 9   MLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARG 68

Query: 224 FLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
               A+ + D +  R   + ++W A+IS +        +   F +M+  G+ P PVT+  
Sbjct: 69  DGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYIT 128

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           VLSAC     +     +   +    G+ P ++    ++ + +    +  A E    M V+
Sbjct: 129 VLSACGKDKYIWLGMQVHKCVVAS-GVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVR 187

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRV 399
            +   W +++ G    G V+  +     LF+  PE +T ++  M + Y QAG++ EA  +
Sbjct: 188 NTVS-WTSVISGFLRLGQVDQAR----TLFDCMPERDTVSWTAMIDGYVQAGQFREALEM 242

Query: 400 REQMKES 406
             +M+ S
Sbjct: 243 FREMQFS 249


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 287/535 (53%), Gaps = 71/535 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-------LNSPV---------------- 37
           MS+RD+ SWN+M++ YS+ G  E+ +A+F +M        N+ +                
Sbjct: 84  MSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFF 143

Query: 38  --LRPDGV-----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
             ++ +G      T VSVL AC Q  DI  G ++H  ++ + +   +++ NAL  MYAKC
Sbjct: 144 VRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKC 203

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS---------- 140
           G+LD AR L D M +K+ VS++++ISGY+ +G  E    LF  M+  GL           
Sbjct: 204 GALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNIL 263

Query: 141 -------------------------TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                                     W  ++ G  QN + E  L L REM    VRP+  
Sbjct: 264 SAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNF 323

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           TISS+ S  +  ++L  G+ +HG AV    D ++ V++A++D Y+K G    A  VF R 
Sbjct: 324 TISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRM 383

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R++I W ++I  YA +G   +A++L+ EML+  ++PD +TF  VLSAC H+GLV++  
Sbjct: 384 LTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQ 443

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
             F ++S  +G+ P+ +HY+CM+ +L RA  + +A + +  M  +P+  +W  LL    I
Sbjct: 444 GYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRI 503

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
           + DV  G+    HLFE++P N G YI+++N+Y+  GRW +   VR  MK + + K    S
Sbjct: 504 NCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYS 563

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           WIE    +  FVA+D +  ++EQIY  L RL+  ++E G+      VL D VEEE
Sbjct: 564 WIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEE 618



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 1/252 (0%)

Query: 48  VLQACGQSSDIVFGMEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +L  C +S+D+V    +   + +  +   D ++ N L+ +YAK G+L  AR L D+MS +
Sbjct: 28  LLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRR 87

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D  S++A++S Y   G VE    +F  M      ++N VI+G   N      L+    MQ
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G      T  S+    S   ++K GK+IHG  V      +++V  A+ + YAK G L 
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD 207

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ +FDR   ++++ W ++IS Y  +G       LF EM ++G+ PD VT + +LSA  
Sbjct: 208 QARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYF 267

Query: 287 HSGLVDKAWDIF 298
             G +D+A   F
Sbjct: 268 QCGYIDEACKTF 279


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 261/450 (58%), Gaps = 1/450 (0%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN++I+G+++ G +E     F +M+ +  +    VT VSVL ACG+  D++ GM+VH 
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAM-ATAVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            V+ES +  D  + NAL+ MYA+CG +D A  L + M  +   S++++ISG +  G V++
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A DLF  M       W A+I G VQ  R    L+  R MQ   VR +  T+ S+ +  + 
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G+    Y  +     +++V  A+ID Y+K G +  A  VF     R    WTAI
Sbjct: 306 LGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAI 365

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I   A +G   +A+ +F  ML     PD VTF  VL+AC H+GLVDK  + F +M+  Y 
Sbjct: 366 ILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYN 425

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           I P+V HY C++ VL RA ++ EA + + KMP+KP++ +WG LL    + G+ E+G+   
Sbjct: 426 ISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAA 485

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
           + L E++P+N+  YI+++N+Y+++ RW +  R+R+ + E G+ K PG S IE +G +  F
Sbjct: 486 ERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEF 545

Query: 427 VAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           VA D S   +++IY  LE +L  +R  GYV
Sbjct: 546 VAADRSHPMNKEIYSKLENVLTDLRNAGYV 575



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 6/196 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD ++W +MI GY Q G + +    FR M    V R D  T+VSV+ AC Q   +  
Sbjct: 253 MPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKV-RADEFTMVSVVTACAQLGALET 311

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G     ++    IKMD+++ NALI MY+KCGS++ A  +  +M ++D+ +++AII G  V
Sbjct: 312 GEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAV 371

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-----QASGVRPNAV 175
           +G  E+A+D+F  M R   +       G++    H  ++D  RE      +A  + P  V
Sbjct: 372 NGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVV 431

Query: 176 TISSIFSLFSHFSNLK 191
               +  +      LK
Sbjct: 432 HYGCLIDVLGRAGKLK 447



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 25/255 (9%)

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE-----IHGYAVKNRYDRNIY 210
           EAV   VR M A G RP+A T  S+    +               IH + VK   + N +
Sbjct: 34  EAVAGYVR-MLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAH 92

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRF----KGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            A+++I  YA  G    A+ V +       G + ++W A+IS +   G    +   F +M
Sbjct: 93  AASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDM 152

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG-----QYGIQPSVEHYACMVGVL 321
           +        VT+ +VLSAC       K  D+   M       + G+ P       +V + 
Sbjct: 153 VRASAMATAVTYVSVLSACG------KGKDLLLGMQVHKRVLESGVLPDQRVENALVDMY 206

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
           +    +  A      M ++  A  W +++ G   SG V+  + + DH+ E    +T  + 
Sbjct: 207 AECGDMDAAWVLFEGMQMRSMAS-WTSVISGLVRSGQVDRARDLFDHMPE---RDTIAWT 262

Query: 382 IMANLYSQAGRWDEA 396
            M + Y Q GR+ +A
Sbjct: 263 AMIDGYVQVGRFRDA 277



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 20/351 (5%)

Query: 23  EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME-----VHNFVIESHIKMDL 77
           EE  A +  ML     RPD  T  S+L+A   +             +H  V++  ++ + 
Sbjct: 33  EEAVAGYVRMLAGGA-RPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNA 91

Query: 78  WICNALIGMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHGFVEKA----MD 129
              ++LI MYA  G    ARA+L+           V ++A+ISG+   G  E +    +D
Sbjct: 92  HAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVD 151

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           + +        T+ +V+S   +       + + + +  SGV P+    +++  +++   +
Sbjct: 152 MVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGD 211

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           +     +     +    R++   T++I    ++G +  A+ +FD    R  I WTA+I  
Sbjct: 212 MDAAWVL----FEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDG 267

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           Y   G    A+  F  M    ++ D  T  +V++ACA  G ++   +      G+ GI+ 
Sbjct: 268 YVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLGIKM 326

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            V     ++ + S+   I  A +    M  +     W A++ G +++G  E
Sbjct: 327 DVFVGNALIDMYSKCGSIERALDVFKDMHNRDKF-TWTAIILGLAVNGRGE 376


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 273/479 (56%), Gaps = 14/479 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGF-----YEECKALFREMLNSPVLRPDGVTVVSVLQACGQS 55
           MSKRD++SW++MIAGY+Q G+      +E   L   M    V  P+ VT +S+L+AC   
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF-PNKVTFMSILKACSVH 399

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +  G ++H  + +   + D  +  A+  MYAKCGS+  A  +  +M +K+ V++++++
Sbjct: 400 GALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLL 459

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           + Y+  G +  A  +F  M    + +WN +I+G  Q+     V +L+  M+  G +P+ V
Sbjct: 460 TMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRV 519

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           TI SI       S L+ GK +H  AVK   + +  VAT++I  Y+K G +  A+ VFD+ 
Sbjct: 520 TIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R  + W A+++ Y  HG   +AV LF  ML   + P+ +TFTAV+SAC  +GLV +  
Sbjct: 580 SNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGR 639

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           +IF  M   + ++P  +HY CMV +L RA R+ EA EF+ +MP +P   VW ALL     
Sbjct: 640 EIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKS 699

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             +V+L ++   H+  +EP N   Y+ ++N+Y+QAGRWD++ +VR+ M + GL K  G S
Sbjct: 700 HDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGES 759

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
            IE  G + +FVA+D +  + + I+  LE L   M+E GY          +DEV++E A
Sbjct: 760 SIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERA 818



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 194/435 (44%), Gaps = 48/435 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+V+W+SMIA Y+      +    F  M ++ +  P+ +T +S+L+AC   S +  
Sbjct: 139 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANI-EPNRITFLSILKACNNYSMLEK 197

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H  V  S ++ D+ +  ALI MY+KCG +  A                        
Sbjct: 198 AREIHTVVKASGMETDVAVATALITMYSKCGEISLA------------------------ 233

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   ++FQ MK   + +W A+I    Q+ +     +L  +M  +G+ PNAVT  S+
Sbjct: 234 -------CEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSL 286

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ IH +  +   + ++ VA A+I  Y K   +  A+  FDR   R +
Sbjct: 287 LNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDV 346

Query: 241 IIWTAIISAYAAHGDASK-----AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           I W+A+I+ YA  G   K        L   M   G+ P+ VTF ++L AC+  G +++  
Sbjct: 347 ISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGR 406

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I   +S + G +        +  + ++   I EA +  SKM  K +   W +LL     
Sbjct: 407 QIHAEIS-KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK-NVVAWASLLTMYIK 464

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR- 414
            GD+   + V     E+   N  ++ +M   Y+Q+G   +   +   MK  G    P R 
Sbjct: 465 CGDLTSAEKV---FSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ--PDRV 519

Query: 415 ---SWIECSGGLQSF 426
              S +E  G L + 
Sbjct: 520 TIISILEACGALSAL 534



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 149/310 (48%), Gaps = 33/310 (10%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +++ C +      G  VH  + E  + +D+++ N+LI  Y+K G +     +   M+ +D
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRD 143

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            V++S++I+ Y  +    KA D F+ MK                                
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMK-------------------------------D 172

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           + + PN +T  SI    +++S L+  +EIH     +  + ++ VATA+I  Y+K G +  
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A  +F + K R+++ WTAII A A H   ++A  L+ +ML  GI P+ VTF ++L++C  
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
              +++   I + +S + G++  V     ++ +  +   I +A E   +M  K     W 
Sbjct: 293 PEALNRGRRIHSHIS-ERGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWS 350

Query: 348 ALLYGASISG 357
           A++ G + SG
Sbjct: 351 AMIAGYAQSG 360


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 272/479 (56%), Gaps = 14/479 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGF-----YEECKALFREMLNSPVLRPDGVTVVSVLQACGQS 55
           MSKRD++SW++MIAGY+Q G+      +E   L   M    V  P+ VT +S+L+AC   
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF-PNKVTFMSILRACTAH 377

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +  G ++H  + +   ++D  +  A+  MYAKCGS+  A  +  +M++K+ V++++ +
Sbjct: 378 GALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFL 437

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           S Y+  G +  A  +F  M    + +WN +I+G  QN     V +L+  M+A G +P+ V
Sbjct: 438 SMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRV 497

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+ +I       + L+ GK +H  AVK   + +  VAT++I  Y+K G +  A+ VFD+ 
Sbjct: 498 TVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKM 557

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R  + W A+++ Y  HGD  +AV LF  ML   + P+ +T TAV+SAC+ +GLV +  
Sbjct: 558 SNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGR 617

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           +IF  M   + + P  +HY CMV +L RA R+ EA EF+  MP +P   VW ALL     
Sbjct: 618 EIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKS 677

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             +V+L +    H+ E+EP     YI ++N+Y+QAGRWD++ +VR  M + GL K  G S
Sbjct: 678 HNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGES 737

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
            IE  G + +FVA+D +  + + I+  LE L   M+E GY          +D+V++E A
Sbjct: 738 SIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKA 796



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 196/432 (45%), Gaps = 48/432 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+V+W+SMIA Y+      +    F  M ++ +  P+ +T +S+L+AC   S +  
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANI-EPNRITFLSILKACNNYSILEK 175

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V    ++ D+ +  ALI MY+KCG +  A  +  +M++++ VS++AII     
Sbjct: 176 GRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQ 235

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           H  + +A +L++ M + G+S                               PNAVT  S+
Sbjct: 236 HRKLNEAFELYEQMLQAGIS-------------------------------PNAVTFVSL 264

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ IH +  +   + ++ VA A+I  Y K   +  A+ +FDR   R +
Sbjct: 265 LNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDV 324

Query: 241 IIWTAIISAYAAHGDASK-----AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           I W+A+I+ YA  G   K        L   M   G+ P+ VTF ++L AC   G +++  
Sbjct: 325 ISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGR 384

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I   +S + G +        +  + ++   I EA +  SKM  K +   W + L     
Sbjct: 385 QIHAELS-KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIK 442

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR- 414
            GD+   + V     E+   N  ++ +M   Y+Q G   +   +   MK  G    P R 
Sbjct: 443 CGDLSSAEKV---FSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ--PDRV 497

Query: 415 ---SWIECSGGL 423
              + +E  G L
Sbjct: 498 TVITILEACGAL 509



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 40/348 (11%)

Query: 17  SQGGFYEECKA-LFREMLNS-PVLRPDGVTVVS-----VLQACGQSSDIVFGMEVHNFVI 69
           S G  +  CKA   RE +    +++  G+ V S     V++ C ++     G  VH  + 
Sbjct: 24  SGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLD 83

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           E  +++D+++ N+LI  Y+K   +  A  +   M+ +D V++S++I+ Y  +    KA D
Sbjct: 84  ELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFD 143

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
            F+                                M  + + PN +T  SI    +++S 
Sbjct: 144 TFE-------------------------------RMTDANIEPNRITFLSILKACNNYSI 172

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L+ G++IH        + ++ VATA+I  Y+K G +  A  VF +   R+++ WTAII A
Sbjct: 173 LEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA 232

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
            A H   ++A  L+ +ML  GI P+ VTF ++L++C     +++   I + +S + G++ 
Sbjct: 233 NAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHIS-ERGLET 291

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +     ++ +  +   + EA E   +M  K     W A++ G + SG
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAGYAQSG 338



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 120/262 (45%), Gaps = 5/262 (1%)

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
           L +  R    + L+  ++  G+  N+ T   +    +     + GK +H    +   + +
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           IY+  ++I+ Y+K   +  A++VF R   R ++ W+++I+AYA +   +KA   F  M +
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
             I+P+ +TF ++L AC +  +++K   I   +    G++  V     ++ + S+   IS
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAM-GMETDVAVATALITMYSKCGEIS 209

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMANL 386
            A E   KM  + +   W A++   +    +     + + + +  I P N   ++ + N 
Sbjct: 210 VACEVFHKM-TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSLLNS 267

Query: 387 YSQAGRWDEADRVREQMKESGL 408
            +     +   R+   + E GL
Sbjct: 268 CNTPEALNRGRRIHSHISERGL 289


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 262/457 (57%), Gaps = 32/457 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V  ++MI+GY   G  +E   +FR +L   + RP+ V + SVL AC   + +  G E+
Sbjct: 413 DVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI-RPNAVAIASVLPACASMAAMKLGQEL 471

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H++ +++  +   ++ +AL+ MYAKCG LD +  +  ++S KDEV               
Sbjct: 472 HSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEV--------------- 516

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                           TWN++IS   QN   E  L+L REM   GV+ + VTISS+ S  
Sbjct: 517 ----------------TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    +  GKEIHG  +K     +++  +A+ID Y K G L  A RVF+    ++ + W 
Sbjct: 561 ASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWN 620

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II++Y A+G   ++VSL   M   G + D VTF A++SACAH+G V +   +F  M+ +
Sbjct: 621 SIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE 680

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EH+ACMV + SRA ++ +A E +  MP KP A +WGALL+   +  +VEL + 
Sbjct: 681 YQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEI 740

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               LF+++P N+G Y++M+N+ + AGRWD   +VR  MK++ + KIPG SW++ +    
Sbjct: 741 ASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSH 800

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
            FVA D S   SE IY+ L+ +L  +REEGY+ + ++
Sbjct: 801 LFVAADKSHPDSEDIYMSLKSILLELREEGYIPMPDL 837



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 161/286 (56%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D+V+WN MI+G  Q GF ++   LF +M  S + RPD VT+VS+L A    +    
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI-RPDSVTLVSLLPALTDLNGFNQ 366

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +++ + + MD+++ +AL+ +Y KC ++  A+++ D     D V  S +ISGY++
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++A+ +F                               R +   G+RPNAV I+S+
Sbjct: 427 NGMSQEAVKMF-------------------------------RYLLEQGIRPNAVAIASV 455

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + +K G+E+H YA+KN Y+   YV +A++D YAK G L  +  +F +   +  
Sbjct: 456 LPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDE 515

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + W ++IS++A +G+  +A++LF EM   G++   VT ++VLSACA
Sbjct: 516 VTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACA 561



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD V WN M+ GY + G       LF +M  S    P+  T+   L      SD+ F
Sbjct: 207 MAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGC-EPNFATLACFLSVSATESDLFF 265

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H   ++  ++ ++ + N L+ MYAKC  LD                          
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD-------------------------- 299

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    LF +M R  L TWN +ISG VQN   +  L L  +MQ SG+RP++VT+ S+
Sbjct: 300 -----DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSL 354

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  +    GKE+HGY V+N    ++++ +A++D Y K   +  AQ V+D  K   +
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +I + +IS Y  +G + +AV +F  +L  GI+P+ V   +VL ACA
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 32/279 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + WN +I G +  G Y      + +M   P    PD  T   V+++C     I  G  VH
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                  +  D+++ +ALI MYA  G L  AR + D M+++D V ++ ++ GY+  G V 
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A++LF                                +M+ASG  PN  T++   S+ +
Sbjct: 230 SAVELFG-------------------------------DMRASGCEPNFATLACFLSVSA 258

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             S+L  G ++H  AVK   +  + VA  ++  YAK   L    ++F       L+ W  
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +IS    +G   +A+ LF +M  +GI+PD VT  ++L A
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 137/332 (41%), Gaps = 44/332 (13%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIK-MDLWICNALIGMYAKCGSLDYARALLDEM 103
           +++VL+ C   S +  G++VH   + + +   D  +   L+GMY        AR   D +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYV------LARRFRDAV 95

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           +      +S++  G                        WN +I GL     + + L    
Sbjct: 96  A-----VFSSLPRGAAACAL-----------------PWNWLIRGLTMAGDYRSALLFYL 133

Query: 164 EMQA--SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
           +M A  S   P++ T   +    +    +  G+ +H  A     D +++V +A+I  YA 
Sbjct: 134 KMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYAN 193

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G L  A++VFD    R  ++W  ++  Y   G  S AV LF +M  +G +P+  T    
Sbjct: 194 GGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACF 253

Query: 282 LSACAHSGLVDKAWDIF-----NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           LS  A         D+F     + ++ +YG++  V     +V + ++ + + +  +    
Sbjct: 254 LSVSATES------DLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL 307

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFV-CD 367
           MP +     W  ++ G   +G V+    + CD
Sbjct: 308 MP-RDDLVTWNGMISGCVQNGFVDQALLLFCD 338


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/471 (36%), Positives = 268/471 (56%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++IAG +Q G YEE   + +EM     LRPD  T+ S+L    + +++  
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEM-GKENLRPDSFTLSSILPIFTEHANVTK 217

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + I      D++I ++LI MYAKC  ++ +      +S++D +S          
Sbjct: 218 GKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAIS---------- 267

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G VQN R +  L   R M    V+P  V+ SS+
Sbjct: 268 ---------------------WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSV 306

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK--GR 238
               +H + L  GK++H Y ++  +D N ++A++++D YAK G +  A+ +F++ +   R
Sbjct: 307 IPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDR 366

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ WTAII   A HG A  AVSLF EML +G++P  V F AVL+AC+H+GLVD+ W  F
Sbjct: 367 DMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYF 426

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N+M   +G+ P +EHYA +  +L RA R+ EA +F+S M  +P+  VW  LL       +
Sbjct: 427 NSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKN 486

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +EL + V + +  ++P N G ++IM+N+YS A RW +A ++R +M+++GL K P  SWIE
Sbjct: 487 IELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIE 546

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL-----LDEVEEE 464
               + +F+A D S    ++I   L  LL  M +EGYVL     L +V+EE
Sbjct: 547 VGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEE 597



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 161/356 (45%), Gaps = 15/356 (4%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           ++W  +I  Y+  G      A F  +L S  + PD     S+L+A            +H 
Sbjct: 42  LAWICIIKCYASHGLLRHSLASF-NLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            VI      DL+  NAL+ MY+K            +        YS  I         + 
Sbjct: 101 AVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKI---------DS 151

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
              LF  M    + +WN VI+G  QN  +E  L++V+EM    +RP++ T+SSI  +F+ 
Sbjct: 152 VRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTE 211

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            +N+  GKEIHGYA+++ +D+++++ +++ID YAK   +  +   F     R  I W +I
Sbjct: 212 HANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSI 271

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAWDIFNAM 301
           I+    +G   + +  F  ML   ++P  V+F++V+ ACAH   ++      A+ I    
Sbjct: 272 IAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGF 331

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                I  S+       G +  AR I    E   +  V  +A + G  ++G ++  
Sbjct: 332 DDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDA 387


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/472 (37%), Positives = 260/472 (55%), Gaps = 40/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +++RD+VSWN+MI GY +   YEE   LF+EM+ + V RPD  T+VSVL AC QS  I  
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV-RPDEGTLVSVLSACAQSGSIEL 233

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E+H  V + H     L I NA IG+Y+KCG ++ A  L + +S KD VS         
Sbjct: 234 GREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVS--------- 284

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 WN +I G    N ++  L L +EM  SG  PN VT+ S
Sbjct: 285 ----------------------WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLS 322

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +    +H   +  G+ IH Y  K          + T++ID YAK G +  A +VF+    
Sbjct: 323 VLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMH 382

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +SL  W A+I  +A HG A+ A  LF+ M  NGI+PD +T   +LSAC+HSGL+D    I
Sbjct: 383 KSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHI 442

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F +++  Y I P +EHY CM+ +L  A    EA E +  MP++P   +W +LL    + G
Sbjct: 443 FKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHG 502

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++EL +     L EIEPEN+G+Y++++N+Y+ AGRW++  R+RE +   G+ K+PG S I
Sbjct: 503 NLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSI 562

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    +  F+  D    +S +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 563 EIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEE 614



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 207/443 (46%), Gaps = 51/443 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M+ G +          ++  M++   + P+  T   +L++C +S     G ++
Sbjct: 47  NLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHV-PNAYTFPFLLKSCAKSKTFEEGRQI 105

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++   ++D +   +LI MYA+ G L+ AR + D  S +D VS +A+I+GY   G V
Sbjct: 106 HAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDV 165

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F  +    + +WNA+I+G V+N  +E  L+L +EM  + VRP+  T+ S+ S  
Sbjct: 166 RSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSAC 225

Query: 185 SHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           +   +++ G+EIH     +  +  ++ +  A I  Y+K G +  A  +F+    + ++ W
Sbjct: 226 AQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSW 285

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD----------- 292
             +I  Y       +A+ LF EML +G  P+ VT  +VL ACAH G +D           
Sbjct: 286 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK 345

Query: 293 --------------------------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
                                      A  +FN+M     +  S+  +  M+   +   R
Sbjct: 346 RLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSM-----MHKSLSSWNAMIFGFAMHGR 400

Query: 327 ISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNY 380
            + A +  S+M    ++P       LL   S SG ++LG+ +   +   + I P+   +Y
Sbjct: 401 ANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPK-LEHY 459

Query: 381 IIMANLYSQAGRWDEADRVREQM 403
             M +L   AG + EA+ +   M
Sbjct: 460 GCMIDLLGHAGLFKEAEEIIHMM 482



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 32/257 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+  + P L  WN ++ GL  ++   + L++   M + G  PNA T   +    + 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               + G++IH   +K   + + Y  T++I  YA+ G L  A++VFD    R ++  TA+
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 247 ISAYAAHGDA-------------------------------SKAVSLFNEMLNNGIQPDP 275
           I+ YA+ GD                                 +A+ LF EM+   ++PD 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            T  +VLSACA SG ++   +I   +   +G   S++     +G+ S+   +  A+    
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE 275

Query: 336 KMPVKPSAKVWGALLYG 352
            +  K     W  L+ G
Sbjct: 276 GLSCKDVVS-WNTLIGG 291


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/430 (36%), Positives = 254/430 (59%), Gaps = 1/430 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+WNSMI G  + G   E   +++EM  +  +RP+ +T++ ++ +C Q  D+  G E
Sbjct: 222 RDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEITMIGMISSCSQVQDLNLGKE 280

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H ++ E  ++  + + NAL+ MY KCG L  AR L D M+ K  VS++ ++ GY   GF
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGF 340

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A ++   +    +  WNA+ISG VQ  + +  L L  EMQ   + P+ VT+ +  S 
Sbjct: 341 LDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSA 400

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  IH Y  +++   ++ + TA++D YAK G +  A +VF+    R+ + W
Sbjct: 401 CSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTW 460

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+I   A HG+A  A+S F++M++ GI PD +TF  VLSAC H GLV++    F+ MS 
Sbjct: 461 TAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSS 520

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P ++HY+CMV +L RA  + EA E V  MP+   A V GAL +   + G+V++G+
Sbjct: 521 KFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGE 580

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L EI+P+++GNY+++A++YS+A  W EA   R+ M + G+ K PG S +E +G +
Sbjct: 581 RTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIV 640

Query: 424 QSFVAKDTSG 433
             FV     G
Sbjct: 641 HEFVLPPYDG 650



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 200/484 (41%), Gaps = 103/484 (21%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ SWN+ I GY + G  E    L++ ML    L+PD  T   +L+ C        G+ V
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              V++   + D+++ NA I M   CG L  A  + ++   +D V+++++I+G +  G  
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+ ++                               +EM+A  VRPN +T+  + S  
Sbjct: 241 IEAIKIY-------------------------------KEMEAEKVRPNEITMIGMISSC 269

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S   +L  GKE H Y  ++  +  I +  A++D Y K G L  A+ +FD    ++L+ WT
Sbjct: 270 SQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWT 329

Query: 245 AIISAYAAHG-------------------------------DASKAVSLFNEMLNNGIQP 273
            ++  YA  G                                  +A++LF+EM    I+P
Sbjct: 330 TMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEP 389

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D VT    LSAC+  G +D    I + +  ++ +   V     +V + ++   I+ A + 
Sbjct: 390 DKVTMVNCLSACSQLGALDVGIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQV 448

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVE---------------------LGKF-VCDH--- 368
             ++P + +   W A++ G ++ G+ +                     LG    C H   
Sbjct: 449 FEEIPQR-NCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGL 507

Query: 369 -------------LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
                         F + P+   +Y  M +L  +AG  +EA+ + + M  +  A + G  
Sbjct: 508 VEEGRKYFSEMSSKFNVSPK-LKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGAL 566

Query: 416 WIEC 419
           +  C
Sbjct: 567 FFAC 570



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 41/239 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYE-------------------------------ECKALF 29
           M+++ +VSW +M+ GY++ GF +                               E  ALF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            EM     + PD VT+V+ L AC Q   +  G+ +H+++    + +D+ +  AL+ MYAK
Sbjct: 380 HEM-QIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAK 438

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAV 145
           CG++  A  + +E+  ++ ++++A+I G  +HG  + A+  F  M   G+     T+  V
Sbjct: 439 CGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGV 498

Query: 146 ISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           +S        E       EM +   V P     S +  L     +L+  +E+    VKN
Sbjct: 499 LSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEEL----VKN 553


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 272/470 (57%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSW+++I+GY Q G YEE   +F EM N+  +R D V VVSVL AC   S +  
Sbjct: 264 MDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAHLSIVKT 322

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  VI   I+  + + NALI MY+  G +  A+ L +   + D++S++++ISG M 
Sbjct: 323 GKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMK 382

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VEKA  LF VM    + +W+AVISG  Q++     L L  EMQ   +RP+   + S+
Sbjct: 383 CGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSV 442

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +H + L  GK +H Y  KN    N+ + T ++D Y K G +  A  VF+  + + +
Sbjct: 443 ISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGV 502

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I   A +G   +++ +F+EM NNG+ P+ +TF  VL AC H GLVD+    F +
Sbjct: 503 SSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFAS 562

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI+P+V+HY CMV +L RA  ++EA + +  MP+ P    WGALL      GD E
Sbjct: 563 MIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 622

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V   L E++P++ G +++++N+++  G W++   VR  MK+ G+ K PG S IE +
Sbjct: 623 MGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 682

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           G +  F+A D +     ++  +L  +   ++ EGY      V LD  EEE
Sbjct: 683 GVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEE 732



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 218/496 (43%), Gaps = 106/496 (21%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+M+  Y Q    E+   L++ M+ + V  PD  T   V+QAC        G E+H+ V
Sbjct: 109 WNTMMRAYIQSNSAEKALLLYKLMVKNNV-GPDNYTYPLVVQACAVRLLEFGGKEIHDHV 167

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     D+++ N LI MYA CG++  AR L DE    D VS+++I++GY+  G VE+A 
Sbjct: 168 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAK 227

Query: 129 -------------------------------DLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
                                           LF  M    + +W+A+ISG  QN  +E 
Sbjct: 228 LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEE 287

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L +  EM A+G+R + V + S+ S  +H S +K GK IHG  ++   +  + +  A+I 
Sbjct: 288 ALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIH 347

Query: 218 TYAKTGFLHGAQR-------------------------------VFDRFKGRSLIIWTAI 246
            Y+ +G +  AQ+                               +FD    + ++ W+A+
Sbjct: 348 MYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAV 407

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQY 305
           IS YA H   S+ ++LF+EM    I+PD     +V+SAC H   +D+  W   +A   + 
Sbjct: 408 ISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKW--VHAYIRKN 465

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGK 363
           G++ +V     ++ +  +   +  A E  + M  K     W AL+ G +++G VE  L  
Sbjct: 466 GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEK-GVSSWNALIIGLAVNGLVERSLDM 524

Query: 364 F--------------------VCDHL----------------FEIEPENTGNYIIMANLY 387
           F                     C H+                  IEP N  +Y  M +L 
Sbjct: 525 FSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP-NVKHYGCMVDLL 583

Query: 388 SQAGRWDEADRVREQM 403
            +AG  +EA+++ E M
Sbjct: 584 GRAGLLNEAEKLIESM 599



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ ++ +F  ++      WN ++   +Q+N  E  L L + M  + V P+  T   +   
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +      GGKEIH + +K  +D ++YV   +I+ YA  G +  A+++FD       + W
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            +I++ Y   GD  +A  +F++M     Q + V   +++      G V +AW +FN M
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQM----PQRNIVASNSMIVLLGKMGQVMEAWKLFNEM 264



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 7/237 (2%)

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF--LHGAQRV 231
            +T+S + +   +  NLK    I    +   +  + + A+ ++     + F  L  + ++
Sbjct: 38  TITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQI 97

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR +  +  +W  ++ AY     A KA+ L+  M+ N + PD  T+  V+ ACA   L 
Sbjct: 98  FDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLE 157

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
               +I + +  + G    V     ++ + +    + +A +   + PV  S   W ++L 
Sbjct: 158 FGGKEIHDHVL-KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS-WNSILA 215

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G    GDVE  K + D + +     + + I+   L  + G+  EA ++  +M E  +
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQRNIVASNSMIV---LLGKMGQVMEAWKLFNEMDEKDM 269


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 166/472 (35%), Positives = 277/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R IVSWN++IAGY+Q G  +     F  ML +  + PD  TV SVL AC     +  
Sbjct: 255 MEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKM 314

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G ++H++++ + +     I NALI  YAK GS++ AR ++D+  ++D + +S++A++ GY
Sbjct: 315 GKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGY 374

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G  ++A ++F VM    +  W A+I G  QN +++  ++L R M  SG  PN+ T++
Sbjct: 375 VKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLA 434

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S  +  + L  GK+IH  A+++  ++++ V+ AII  YA++G +  A+RVFD+   R
Sbjct: 435 AVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWR 494

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              + WT++I A A HG   +A+ LF EML  G++PD VT+  V SAC H+G +DK    
Sbjct: 495 KETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRY 554

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +  M  ++GI P + HYACMV +L+RA  ++EA EF+ +MPV P   VWG+LL    +  
Sbjct: 555 YEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRK 614

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + +L +   + L  I+P+N+G Y  +AN+YS  GRW++A R+ +  K+  + K  G SW 
Sbjct: 615 NADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWT 674

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                +  F A D    + + I      +   +++ G+V     +L +V++E
Sbjct: 675 HVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDE 726



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 216/456 (47%), Gaps = 42/456 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW  M+ G ++ G + +    F +M+    L P    + +VL +C  +     
Sbjct: 123 MPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEG-LAPSQFMLTNVLSSCAATEARGI 181

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FVI+  +   + + N+++ MY KCG  + ARA+ + M  + E S++A++S Y  
Sbjct: 182 GRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTH 241

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV-REMQASGVRPNAVTISS 179
            G ++ A+ +F+ M+   + +WNA+I+G  QN   +  L    R + AS + P+  T++S
Sbjct: 242 QGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTS 301

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR--------- 230
           + S  ++   LK GK++H Y ++     +  +  A+I TYAK+G +  A+R         
Sbjct: 302 VLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVAD 361

Query: 231 ------------------------VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
                                   VFD    R +I WTA+I  Y  +G   +A+ LF  M
Sbjct: 362 LNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSM 421

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           + +G +P+  T  AVLSACA    +     I +  + +   + SV     ++ V +R+  
Sbjct: 422 IRSGPEPNSHTLAAVLSACASLAYLGYGKQI-HCRAIRSLQEQSVSVSNAIITVYARSGS 480

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMA 384
           +  A     ++  +     W +++   +  G  E    + + +    ++P+    YI + 
Sbjct: 481 VPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRV-TYIGVF 539

Query: 385 NLYSQAGRWDEADRVREQM-KESGLAKIPGRSWIEC 419
           +  + AG  D+  R  EQM  E G+  +P  S   C
Sbjct: 540 SACTHAGFIDKGKRYYEQMLNEHGI--VPEMSHYAC 573



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 150/329 (45%), Gaps = 13/329 (3%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC----GSLDYARALLDEM 103
           +LQ    + +   G  +H   +++ + +  ++CN L+  YA+     G    AR L D++
Sbjct: 31  LLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDI 90

Query: 104 --SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
             + ++  ++++++S Y   G +  A  +F  M      +W  ++ GL +  R    +  
Sbjct: 91  PYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKT 150

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
             +M   G+ P+   ++++ S  +       G+++H + +K      + VA +++  Y K
Sbjct: 151 FLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGK 210

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G    A+ VF+R K RS   W A++S Y   G    A+S+F  M    I    V++ A+
Sbjct: 211 CGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAI 266

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE---FVSKMP 338
           ++    +GL D A   F+ M     ++P       ++   +  R +    +   ++ +  
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 339 VKPSAKVWGALLYGASISGDVELGKFVCD 367
           +  S+++  AL+   + SG VE  + + D
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMD 355



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 23/232 (9%)

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF----LHGAQRVFDR--FKGRSLII 242
           N   G+ IH +AVK     + Y+   ++  YA+ G      H A+R+FD   +  R+   
Sbjct: 40  NPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFT 99

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +++S YA  G  + A  +F +M     + D V++T ++     +G    A   F  M 
Sbjct: 100 WNSLLSMYAKSGRLADARVVFAQM----PERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 303 GQYGIQPSVEHYACMVGVLS-----RARRISEATE-FVSKMPVKPSAKVWGALLYGASIS 356
           G+ G+ PS      +  VLS      AR I      FV K+ +     V  ++LY     
Sbjct: 156 GE-GLAPS---QFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKC 211

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           GD E  + V + + ++  E++ N   M +LY+  GR D A  + E M+E  +
Sbjct: 212 GDAETARAVFERM-KVRSESSWN--AMVSLYTHQGRMDLALSMFENMEERSI 260


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/466 (36%), Positives = 269/466 (57%), Gaps = 21/466 (4%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTV-----VSVLQACGQSSDIVFG 61
           V+W S+++ +++ G Y+E   LF+      V+R  G+ +       VL  C   +++ +G
Sbjct: 234 VTWTSLLSSHARCGLYDETLELFK------VMRTRGIEIGAEALAVVLSVCADMAEVDWG 287

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H +V++   +  L++ NALIG Y K   +  A  +  E+ +K+ VS++A+IS Y   
Sbjct: 288 KEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAES 347

Query: 122 GFVEKAMDLFQVMK----------RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           G  ++A   F  M+          RP + +W+AVISG     R E  L+L R+MQ + V 
Sbjct: 348 GLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVM 407

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
            N VTISS+ S+ +  + L  G+E+HGYA++N    NI V   +I+ Y K G       V
Sbjct: 408 ANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLV 467

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FD  +GR LI W ++I  Y  HG    A+  FNEM+   ++PD +TF A+LSAC+H+GLV
Sbjct: 468 FDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLV 527

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
               ++F+ M  ++ I+P+VEHYACMV +L RA  + EAT+ V  MP++P+  VWGALL 
Sbjct: 528 AAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLN 587

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
              +  D+++ +     +  ++ + TG++++++N+Y+  GRWD++ RVR   +  GL KI
Sbjct: 588 SCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKI 647

Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL 457
           PG+SWIE    + +F A +      E IY+ILE L   M  E Y L
Sbjct: 648 PGQSWIEVRKKVYTFSAGNLVHFGLEDIYVILEELNLHMASENYKL 693



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 162/310 (52%), Gaps = 11/310 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S   ++ WNS+I      G+++    L+ EM     L PDG T+  V++AC         
Sbjct: 93  SLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFL-PDGFTLPLVIRACSSLGSSYLC 151

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             VH   ++   +  L + N L+GMY K G ++ AR L D M  +  VS++ ++SGY ++
Sbjct: 152 RIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALN 211

Query: 122 GFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                A  +F+ M+  GL     TW +++S   +   ++  L+L + M+  G+   A  +
Sbjct: 212 RDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEAL 271

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           + + S+ +  + +  GKEIHGY VK  Y+  ++V  A+I TY K   +  A +VF   K 
Sbjct: 272 AVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKN 331

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG------IQPDPVTFTAVLSACAHSGLV 291
           ++L+ W A+IS+YA  G   +A + F  M  +       ++P+ ++++AV+S  A+ G  
Sbjct: 332 KNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRG 391

Query: 292 DKAWDIFNAM 301
           +K+ ++F  M
Sbjct: 392 EKSLELFRQM 401



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 162/360 (45%), Gaps = 43/360 (11%)

Query: 71  SHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSA--IISGYMVHGFVEK 126
           SH+  D  I  +    + +C +L  AR L  ++  +    + + A  +I+ Y    F+  
Sbjct: 23  SHVHNDELI-YSFHAFFQRCFTLQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSH 81

Query: 127 AMDLFQVMKRPGLS---TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           A  +F  +    L     WN++I   V +  H+  L+L  EM+  G  P+  T+  +   
Sbjct: 82  ARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRA 141

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +    + +H +A++  +  +++V   ++  Y K G +  A+++FD    RS++ W
Sbjct: 142 CSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSW 201

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             ++S YA + D+  A  +F  M   G+QP+ VT+T++LS+ A  GL D+  ++F  M  
Sbjct: 202 NTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRT 261

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           + GI+   E  A ++ V +    +                  WG  ++G  + G  E   
Sbjct: 262 R-GIEIGAEALAVVLSVCADMAEVD-----------------WGKEIHGYVVKGGYEDYL 303

Query: 364 FVCDHL-----------------FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           FV + L                  EI+ +N  ++  + + Y+++G  DEA      M++S
Sbjct: 304 FVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKS 363



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 33/232 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + +++SW+++I+G++  G  E+   LFR+M  + V+  + VT+ SVL  C + + +  
Sbjct: 370 LVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVM-ANCVTISSVLSVCAELAALNL 428

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + I + +  ++ + N LI MY KCG       + D +  +D +S++++I GY +
Sbjct: 429 GRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGM 488

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+  F                                EM  + ++P+ +T  +I
Sbjct: 489 HGLGENALRTFN-------------------------------EMIRARMKPDNITFVAI 517

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRV 231
            S  SH   +  G+ +    V   R + N+     ++D   + G L  A  +
Sbjct: 518 LSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDI 569



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD++SWNS+I GY   G  E     F EM+ +  ++PD +T V++L AC  +  +  G  
Sbjct: 474 RDLISWNSLIGGYGMHGLGENALRTFNEMIRAR-MKPDNITFVAILSACSHAGLVAAGRN 532

Query: 64  VHN-FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           + +  V E  I+ ++     ++ +  + G L  A  ++  M  + +E  + A+++
Sbjct: 533 LFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLN 587


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/453 (37%), Positives = 266/453 (58%), Gaps = 40/453 (8%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
            +I  W  +    ++ GFYEE  + F EM     LRP+   + S+L+ACG  SD   G  +
Sbjct: 868  NIRRWIVLTGACARRGFYEEALSAFSEM-QKEGLRPNQFVLPSILKACGHLSDRRTGENM 926

Query: 65   HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            H  ++++  + D +I +ALI MY+KCG ++ A  + D + DKD V  +A++SGY  HGFV
Sbjct: 927  HTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFV 986

Query: 125  EKAMDLFQVMKR---------------------------------------PGLSTWNAV 145
             +A+BL Q M++                                       P + +W +V
Sbjct: 987  HEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSV 1046

Query: 146  ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
            ISG VQN  +    D  +EM   G  P++VTISS+    ++ +NL+ GKEIHGYA+    
Sbjct: 1047 ISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGV 1106

Query: 206  DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
            ++++YV +A++D YAK G++  A+ +F     R+ + W ++I  YA HG  ++A+ LFN+
Sbjct: 1107 EKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQ 1166

Query: 266  MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
            M  +  + D +TFTAVL+AC+H+G+V+    +F  M  +Y I+P +EHYACMV +L RA 
Sbjct: 1167 MEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAG 1226

Query: 326  RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            ++SEA + +  MPV+P   VWGALL      G++EL +   +HLFE+EPE+ G+ ++++N
Sbjct: 1227 KLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSN 1286

Query: 386  LYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            LY+ AGRW  A ++++ MK+    K PG SWIE
Sbjct: 1287 LYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 238/455 (52%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+I+SW + I G+ Q G +++    F  M  S +  P+  T   VL +CG   D + 
Sbjct: 275 LRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGI-EPNEFTFSIVLASCGCVKDFID 333

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H  VI+  +   +++  A+I MY+  G +D A     +M                 
Sbjct: 334 GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMG---------------- 377

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         +     +WNA+I+G V N + E  ++    M    V  N  T S+I
Sbjct: 378 --------------RAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNI 423

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   S F +L    +IH   +K+  + N++VA+++I+ Y + G L  A +VF +     +
Sbjct: 424 FKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADV 483

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +II AY+ +GD  KA+ L  +M+  G +P   TF  VLSAC+HSGLV +  + F +
Sbjct: 484 VSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKS 543

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y IQP   H +CMV +L RA ++  A +F+ K+ +KP+A +W  LL     + +++
Sbjct: 544 MVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQ 603

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + ++V + + ++EP +   Y+ ++N+Y++ GRW +A+  R  M++  ++K PG SWIE +
Sbjct: 604 MAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVN 663

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F + D +  +  ++Y  L++L+  +++ GY
Sbjct: 664 NKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIGY 698



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 154/323 (47%), Gaps = 36/323 (11%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P    V S L  CG+   +  G   H FV++  +  D ++C +LI MYAKCG +D A  +
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+M+  D  + + +IS Y  +GF  +A   FQV  + G                     
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQA---FQVFMQIG--------------------- 206

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
                    G RPN  T S++ ++    S ++ GK++H + VK +Y     V  A++  Y
Sbjct: 207 -------NMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLY 259

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           +K G +  A+ VF+  + R++I WTA I+ +  HGD  KA+  F+ M  +GI+P+  TF+
Sbjct: 260 SKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFS 319

Query: 280 AVLSACAHSGLVDKAWD--IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            VL++C   G V    D  +F+    + G+   V     ++ + S    + EA +   +M
Sbjct: 320 IVLASC---GCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM 376

Query: 338 PVKPSAKVWGALLYGASISGDVE 360
               S   W AL+ G  ++  +E
Sbjct: 377 GRAASNVSWNALIAGYVLNEKIE 399



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 134/287 (46%), Gaps = 33/287 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+  D  + N +I+ Y++ GF+ +   +F ++ N    RP+  T  ++L  CG  S I  
Sbjct: 174 MTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGT-RPNHYTYSTMLAVCGTISAIQE 232

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++     +  + NAL+ +Y+KCG ++ A  + + +  ++ +S++A I+G+  
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQ 292

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  +KA+  F +M+                                SG+ PN  T S +
Sbjct: 293 HGDFKKALKQFSMMRE-------------------------------SGIEPNEFTFSIV 321

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRS 239
            +      +   G+  H   +K      ++V TAIID Y+  G +  A++ F +  +  S
Sbjct: 322 LASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAAS 381

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            + W A+I+ Y  +    KA+  F  M+   +  +  T++ +  AC+
Sbjct: 382 NVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACS 428



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 84   IGMYAKCGSLDYARALLDEMS--DKDEVSYSA--IISGYMVHGFVEKAMDLFQVMKRPGL 139
            I MYA+  +L   RAL   +       ++Y A  ++S Y   G +  A  LF  +    +
Sbjct: 810  IDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNI 869

Query: 140  STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
              W  +     +   +E  L    EMQ  G+RPN   + SI     H S+ + G+ +H  
Sbjct: 870  RRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTV 929

Query: 200  AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
             +KN ++ + Y+ +A+I  Y+K G +  A RVFD    + L++  A++S YA HG   +A
Sbjct: 930  ILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEA 989

Query: 260  VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            + L  +M   G++P+ V++  +++  +  G      ++F  M+   G++P V
Sbjct: 990  LBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN-GVEPDV 1040



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 36/194 (18%)

Query: 3    KRDIVSWNSMIAGYSQ------------------------------GGFYE-----ECKA 27
            K ++VSWN++IAG+SQ                               GF +     E   
Sbjct: 1002 KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFD 1061

Query: 28   LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
             F+EML+     P  VT+ S+L AC   +++  G E+H + +   ++ D+++ +AL+ MY
Sbjct: 1062 AFKEMLDQGFC-PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMY 1120

Query: 88   AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
            AKCG +  A+ L   M +++ V+++++I GY  HG+  +A++LF  M+       +   +
Sbjct: 1121 AKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 1180

Query: 148  GLVQNNRHEAVLDL 161
             ++    H  +++L
Sbjct: 1181 AVLNACSHAGMVEL 1194



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 43/221 (19%)

Query: 176  TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
            T +    +++    L  G+ +H + V     R  Y A  ++  Y + G L  A+++FD+ 
Sbjct: 805  TYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 864

Query: 236  KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-------- 287
               ++  W  +  A A  G   +A+S F+EM   G++P+     ++L AC H        
Sbjct: 865  PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGE 924

Query: 288  ---------------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
                                        G V+KA  +F+     + +   +     MV  
Sbjct: 925  NMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD-----WIVDKDLVVMNAMVSG 979

Query: 321  LSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
             ++   + EA + V KM    VKP+   W  L+ G S  GD
Sbjct: 980  YAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 1020



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M +R+ V+WNS+I GY+  G+  E   LF +M  S   + D +T  +VL AC  +  +  
Sbjct: 1136 MPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDT-KLDHLTFTAVLNACSHAGMVEL 1194

Query: 61   GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
            G  +   + E +    +++ + C  ++ +  + G L  A  L+  M  + D+  + A++ 
Sbjct: 1195 GESLFXKMQEKYRIEPRLEHYAC--MVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 1252

Query: 117  GYMVHGFVEKA 127
                HG +E A
Sbjct: 1253 ACRNHGNIELA 1263


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 268/470 (57%), Gaps = 37/470 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++V+W  +IAGY+Q G  +    L  +M  + V  P+ +T  S+LQ C     +  
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA-PNKITYTSILQGCTTPLALEH 316

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH ++I+S    ++W+ NALI MY KCG L  AR L  ++  +D V           
Sbjct: 317 GKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVV----------- 365

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TW A+++G  Q   H+  +DL R MQ  G++P+ +T +S 
Sbjct: 366 --------------------TWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSA 405

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L+ GK IH   V   Y  ++Y+ +A++  YAK G +  A+ VF++   R++
Sbjct: 406 LTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNV 465

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I+  A HG   +A+  F +M   GI+PD VTFT+VLSAC H GLV++    F +
Sbjct: 466 VAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRS 525

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P VEHY+C V +L RA  + EA   +  MP +P   VWGALL    I  DVE
Sbjct: 526 MYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVE 585

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            G+   +++ +++P++ G Y+ ++N+Y+ AGR+++A++VR+ M++  + K PG+SWIE  
Sbjct: 586 RGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 645

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEES 465
           G +  F  +D S  ++++IY  L +L   ++E+GYV     +L +V+EE 
Sbjct: 646 GKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQ 695



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 205/437 (46%), Gaps = 79/437 (18%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+IVSW +MI  +  G    E    + E +     +PD VT VS+L A      +  G +
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCY-ETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  + ++ ++++  +  +L+GMYAKCG +  A+ + D++ +K+ V+++ +I+GY   G 
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+ A++L +                               +MQ + V PN +T +SI   
Sbjct: 279 VDVALELLE-------------------------------KMQQAEVAPNKITYTSILQG 307

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ GK++H Y +++ Y R I+V  A+I  Y K G L  A+++F     R ++ W
Sbjct: 308 CTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTW 367

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------------ 285
           TA+++ YA  G   +A+ LF  M   GI+PD +TFT+ L++C                  
Sbjct: 368 TAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVH 427

Query: 286 -----------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                            A  G +D A  +FN MS     + +V  +  M+   ++  R  
Sbjct: 428 AGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMS-----ERNVVAWTAMITGCAQHGRCR 482

Query: 329 EATEFVSKMP---VKPSAKVWGALLYGASISGDVELGK--FVCDHL-FEIEPENTGNYII 382
           EA E+  +M    +KP    + ++L   +  G VE G+  F   +L + I+P    +Y  
Sbjct: 483 EALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKP-MVEHYSC 541

Query: 383 MANLYSQAGRWDEADRV 399
             +L  +AG  +EA+ V
Sbjct: 542 FVDLLGRAGHLEEAENV 558



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 191/464 (41%), Gaps = 101/464 (21%)

Query: 32  MLNSPVLRPDGVTVVS-----VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
           +LN+ +L+  G  V S     +LQ C +   +  G EVH  +++S I+ + ++ N L+ M
Sbjct: 83  ILNTMILQ--GTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSM 140

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YAKCGSL  AR + D + D++ VS                               W A+I
Sbjct: 141 YAKCGSLTDARRVFDGIRDRNIVS-------------------------------WTAMI 169

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206
              V  N++         M+ +G +P+ VT  S+ + F++   L+ G+++H    K   +
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
               V T+++  YAK G +  AQ +FD+   ++++ WT +I+ YA  G    A+ L  +M
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM 289

Query: 267 LNNGIQPDPVTFTAVLSACA----------------HSGLVDKAWDIFNAMSGQYGIQPS 310
               + P+ +T+T++L  C                  SG   + W + NA+   Y     
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW-VVNALITMY----- 343

Query: 311 VEHYACMVGVLSRARRI-------------------------SEATEFVSKMP---VKPS 342
                C  G L  AR++                          EA +   +M    +KP 
Sbjct: 344 -----CKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPD 398

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRVR 400
              + + L   S    ++ GK +   L      +   Y+   + ++Y++ G  D+A  V 
Sbjct: 399 KMTFTSALTSCSSPAFLQEGKSIHQQLVH-AGYSLDVYLQSALVSMYAKCGSMDDARLVF 457

Query: 401 EQMKESGL----AKIPGRSWI-ECSGGLQSFVAKDTSGDKSEQI 439
            QM E  +    A I G +    C   L+ F      G K +++
Sbjct: 458 NQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKV 501



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 2/217 (0%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           +S L +  R +  L ++  M   G R  +     +    +   +L+ G+E+H   +K+  
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
             N Y+   ++  YAK G L  A+RVFD  + R+++ WTA+I A+ A     +A   +  
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M   G +PD VTF ++L+A  +  L+     +   ++ + G++        +VG+ ++  
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIA-KAGLELEPRVGTSLVGMYAKCG 246

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            IS+A     K+P K +   W  L+ G +  G V++ 
Sbjct: 247 DISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVA 282


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 273/466 (58%), Gaps = 7/466 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V+WN M++GY++   +++ K LF EM    V  P+ VT+V +L AC +  D+  G  +
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGV-SPNSVTLVLMLSACSKLKDLEGGKHI 230

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           + ++    ++ +L + N LI M+A CG +D A+++ D M ++D +S+++I++G+   G +
Sbjct: 231 YKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQI 290

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A   F  +      +W A+I G ++ NR    L L REMQ S V+P+  T+ SI +  
Sbjct: 291 DLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTAC 350

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +H   L+ G+ +  Y  KN    + +V  A+ID Y K G +  A++VF     +    WT
Sbjct: 351 AHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWT 410

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I   A +G   +A+++F+ M+   I PD +T+  VL AC H+G+V+K    F +M+ Q
Sbjct: 411 AMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQ 470

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           +GI+P+V HY CMV +L RA R+ EA E +  MPVKP++ VWG+LL    +  +V+L + 
Sbjct: 471 HGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEM 530

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               + E+EPEN   Y+++ N+Y+   RW+   +VR+ M E G+ K PG S +E +G + 
Sbjct: 531 AAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY 590

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
            FVA D S  +S++IY  LE ++  + + GY      V LD  EE+
Sbjct: 591 EFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEED 636



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 192/459 (41%), Gaps = 102/459 (22%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI GYS+    +   +++  ML S + +PD  T   +L+   ++  + +G  + N  
Sbjct: 75  WNTMIKGYSRINHPQNGVSMYLLMLASNI-KPDRFTFPFLLKGFTRNMALQYGKVLLNHA 133

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY-MVHGFVEKA 127
           ++     +L++  A I M++ C  +D AR + D     + V+++ ++SGY  V  F +  
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSK 193

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
           M                                L  EM+  GV PN+VT+  + S  S  
Sbjct: 194 M--------------------------------LFIEMEKRGVSPNSVTLVLMLSACSKL 221

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +L+GGK I+ Y      +RN+ +   +ID +A  G +  AQ VFD  K R +I WT+I+
Sbjct: 222 KDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIV 281

Query: 248 SAYAAHGDAS-------------------------------KAVSLFNEMLNNGIQPDPV 276
           + +A  G                                  +A++LF EM  + ++PD  
Sbjct: 282 TGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEF 341

Query: 277 TFTAVLSACAHSGLVD-----KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI---- 327
           T  ++L+ACAH G ++     K +   N++     +  ++       G + +A+++    
Sbjct: 342 TMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM 401

Query: 328 ---------------------SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGK 363
                                 EA    S M    + P    +  +L   + +G VE G+
Sbjct: 402 HHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQ 461

Query: 364 -FVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRV 399
            F      +  I+P N  +Y  M +L  +AGR +EA  V
Sbjct: 462 SFFISMTMQHGIKP-NVTHYGCMVDLLGRAGRLEEAHEV 499



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD VSW +MI GY +   + E  ALFREM  S V +PD  T+VS+L AC     +  
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNV-KPDEFTMVSILTACAHLGALEL 358

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  ++ ++ IK D ++ NALI MY KCG++  A+ +  EM  KD+ +++A+I G  +
Sbjct: 359 GEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAI 418

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD-----LVREMQASGVRPNAV 175
           +G  E+A+ +F  M    ++       G++    H  +++      +      G++PN  
Sbjct: 419 NGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVT 478

Query: 176 TISSIFSLFSHFSNLKGGKEI 196
               +  L      L+   E+
Sbjct: 479 HYGCMVDLLGRAGRLEEAHEV 499



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 136/293 (46%), Gaps = 10/293 (3%)

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           SG M++     A  +F  + +P L  WN +I G  + N  +  + +   M AS ++P+  
Sbjct: 54  SGKMIY-----ARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRF 108

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T   +   F+    L+ GK +  +AVK+ +D N++V  A I  ++    +  A++VFD  
Sbjct: 109 TFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMG 168

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
               ++ W  ++S Y       K+  LF EM   G+ P+ VT   +LSAC+    ++   
Sbjct: 169 DAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK 228

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I+  ++G   ++ ++     ++ + +    + EA      M  +     W +++ G + 
Sbjct: 229 HIYKYINGGI-VERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVIS-WTSIVTGFAN 286

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            G ++L +   D   +I   +  ++  M + Y +  R+ EA  +  +M+ S +
Sbjct: 287 IGQIDLARKYFD---QIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNV 336



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D  +W +MI G +  G  EE  A+F  M+ + +  PD +T + VL AC  +  +  
Sbjct: 401 MHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASI-TPDEITYIGVLCACTHAGMVEK 459

Query: 61  GMEVH-NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
           G     +  ++  IK ++     ++ +  + G L+ A  ++  M  K + + + +++   
Sbjct: 460 GQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGAC 519

Query: 119 MVHGFVEKA 127
            VH  V+ A
Sbjct: 520 RVHKNVQLA 528



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 110/297 (37%), Gaps = 41/297 (13%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--KTGFLHGAQRVFDRFK 236
           S  SL     ++   K+IH + +K     +      +I      ++G +  A++VFD   
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
             +L IW  +I  Y+        VS++  ML + I+PD  TF  +L     +  +     
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKV 128

Query: 297 IFN-----AMSGQYGIQPSVEHYACMVGVLSRARRI---SEATEFVS------------- 335
           + N            +Q +  H   +  ++  AR++    +A E V+             
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQ 188

Query: 336 ------------KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF-EIEPENTGNYII 382
                       K  V P++     +L   S   D+E GK +  ++   I   N     +
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV 248

Query: 383 MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQI 439
           + ++++  G  DEA  V + MK   +      SW     G  +    D +    +QI
Sbjct: 249 LIDMFAACGEMDEAQSVFDNMKNRDVI-----SWTSIVTGFANIGQIDLARKYFDQI 300


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 175/522 (33%), Positives = 280/522 (53%), Gaps = 74/522 (14%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           SK ++VSW+++I G++Q G+ +E   L   M  +    P+  T+ SVL AC +  ++  G
Sbjct: 7   SKPNLVSWSAVIGGFAQNGYDKEALELLCRM-QAAGFEPNARTLASVLPACARLQNLNLG 65

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H +V       + ++ N L+ +Y +C  +  A  +    S K+ VSY+ +I GY  +
Sbjct: 66  KEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCEN 125

Query: 122 GFVEKAMDLFQVMKRPG-------------------------------------LSTWNA 144
           G VEKA +LF  M+  G                                      +TWN 
Sbjct: 126 GNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNV 185

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS-------------LFS------ 185
           +ISG    N+ E + +L+++M+  G  PN  T + I S             LF+      
Sbjct: 186 LISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSS 245

Query: 186 ----------------HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
                             + +  GK++H ++++  Y+ ++++  A++D YAK G +  A 
Sbjct: 246 LRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAM 305

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           +V++R    +L+   A+++AYA HG   + ++LF  ML NG +PD VTF +VLS+C H+G
Sbjct: 306 QVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAG 365

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            V+   + F+ M+  Y + PS++HY C+V +LSRA R+ EA E V K+P KP + +WGAL
Sbjct: 366 AVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGAL 424

Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           L G  I G+VELG+   + L E+EP NTGNY+++ANLY+ AGRW + DR R+ +K+ G+ 
Sbjct: 425 LGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMH 484

Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
           K PG SWIE    +  F++ D S +K+E IY  L+ L   MR
Sbjct: 485 KSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 526



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 68/283 (24%)

Query: 1   MSKRDIVSWNSMIAGYS-----------------------------------QGGFYEEC 25
           +++RD  +WN +I+GY+                                   + G  E  
Sbjct: 175 VTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELA 234

Query: 26  KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85
             LF EM  S  LRPD  TV  +L AC + + I  G +VH   I    ++D+ I  AL+ 
Sbjct: 235 LRLFTEMQTSS-LRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVD 293

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MYAKCGS+ +A  + + +S+ + VS +A+++ Y +HG  ++ + LF              
Sbjct: 294 MYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALF-------------- 339

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
                            R M  +G RP+ VT  S+ S   H   ++ G E          
Sbjct: 340 -----------------RNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNV 382

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAII 247
             ++   T I+D  ++ G L  A  +  +   +   ++W A++
Sbjct: 383 TPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALL 425



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++VS N+M+  Y+  G  +E  ALFR ML +   RPD VT +SVL +C  +  +  
Sbjct: 311 ISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNG-FRPDHVTFLSVLSSCVHAGAVET 369

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
           G E  + +   ++   L     ++ + ++ G LD A  L+ ++  K D V + A++ G +
Sbjct: 370 GHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCV 429

Query: 120 VHGFVE 125
           + G VE
Sbjct: 430 IWGNVE 435


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 171/458 (37%), Positives = 262/458 (57%), Gaps = 33/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++++D+VSWNS+++GY++ GF  E   +F  +       PD +++VSVL ACG+  D+  
Sbjct: 178 ITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLEL 237

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E  +K++ +I +ALI MY+KCG L  +R + D M  +D +           
Sbjct: 238 GRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFI----------- 286

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNA IS   QN   +  + L   M+ +GV PN VT++++
Sbjct: 287 --------------------TWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAV 326

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK++  YA       +I+VATA+ID YAK G L  AQRVF+    ++ 
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND 386

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             W A+ISA A+HG A +A+SLF  M + G   +P+ +TF ++LSAC H+GLVD+ + +F
Sbjct: 387 ASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLF 446

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EHY+CMV +LSRA  + EA + + KMP KP     GAL        +
Sbjct: 447 DMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKN 506

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++G+ V   L E++P N+GNYII + +Y     WD+A R+R  M+E+G+ K PG SWIE
Sbjct: 507 VDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIE 566

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               L+ F++ D     S  +  I++ L   +++EGYV
Sbjct: 567 VGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYV 604



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 172/369 (46%), Gaps = 35/369 (9%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           + P+  T   V  AC    +I      H  V +  +  D    N+++ MY +CG    AR
Sbjct: 113 ISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVAR 172

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + DE+++KD VS+++++SGY   GF  +A+++F  ++                      
Sbjct: 173 KVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLR---------------------- 210

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
                   + SG  P+ +++ S+        +L+ G+ + G+ V+     N Y+ +A+I 
Sbjct: 211 --------EESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALIS 262

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y+K G L  ++R+FD    R  I W A ISAYA +G A +A+SLF+ M  NG+ P+ VT
Sbjct: 263 MYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            TAVLSACA  G +D    + +  +   G+Q  +     ++ + ++   +  A    + M
Sbjct: 323 LTAVLSACASIGALDLGKQM-DEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS---QAGRWD 394
           P K  A  W A++   +  G  +    + + + +       N I   +L S    AG  D
Sbjct: 382 PRKNDAS-WNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVD 440

Query: 395 EADRVREQM 403
           E  R+ + M
Sbjct: 441 EGYRLFDMM 449



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           S+     LL +     + +YS +I  ++     + A   F +M R   +TW+        
Sbjct: 48  SIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA---FNIMLRATTTTWH-------- 96

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
              +   L L  +M+   + PN  T   +F   ++   ++  +  H    K   D + + 
Sbjct: 97  --DYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHT 154

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNG 270
             +++  Y + G    A++VFD    + L+ W +++S YA  G A +AV +F  +   +G
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESG 214

Query: 271 IQPDPVTFTAVLSACAHSG 289
            +PD ++  +VL AC   G
Sbjct: 215 FEPDEMSLVSVLGACGELG 233


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 272/470 (57%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D V+WN +I GY Q G Y++   LF +M +S  ++PD V + +VL ACG + ++ +
Sbjct: 182 MCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSD-MKPDSVILCTVLSACGHAGNLSY 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H FV ++   +D  +  ALI MYA CG++D AR + D +S K  +  +A++SGY  
Sbjct: 241 GRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAK 300

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+ A  +F  M    L  W+A+ISG  ++++ +  L L  EM      P+ +T+ S+
Sbjct: 301 LGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSV 360

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  SH   L     IH Y  ++ + R + V  A+ID YAK G L  A+ VF+    +++
Sbjct: 361 ISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNV 420

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+++I+A+A HG+A  A+ LF  M    I+P+ VTF  VL AC H+GLV++   +F++
Sbjct: 421 ISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSS 480

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI P+ EHY CMV +  RA  + +A E +  MP  P+  +WG+L+    + G+ E
Sbjct: 481 MINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAE 540

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F    L E+EP++ G  ++++N+Y++  RW++   +R+ M   G++K    S IE +
Sbjct: 541 LGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEIN 600

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
             +  F+  D    +S++IY  L+ ++  ++  GY      +L+D  EE+
Sbjct: 601 NQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEED 650



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 193/444 (43%), Gaps = 70/444 (15%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N ++   S+  F E+   L+  +        D  +  S+L+A  + S    G+E+H    
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +     D +I   LI MYA C  +  AR L D+M   D V+                   
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVA------------------- 189

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
                       WN +I G  QN  ++  L L  +M++S ++P++V + ++ S   H  N
Sbjct: 190 ------------WNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGN 237

Query: 190 LKGGKEIH------GYAVKNR---------------------YD----RNIYVATAIIDT 218
           L  G+ IH      GYA+ +                      YD    +++ V+TA++  
Sbjct: 238 LSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSG 297

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           YAK G +  A+ +FD+   R L+ W+A+IS YA      +A+ LF+EML     PD +T 
Sbjct: 298 YAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITM 357

Query: 279 TAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            +V+SAC+H G + +A W         +G   SV +   ++ + ++   + +A E    M
Sbjct: 358 LSVISACSHVGALAQANWIHTYVDRSGFGRALSVNN--ALIDMYAKCGNLVKAREVFENM 415

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYSQAGRWDEA 396
           P K +   W +++   ++ G+ +    +   + E+  E  G  +I +      AG  +E 
Sbjct: 416 PRK-NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEG 474

Query: 397 DRVREQM-KESGLAKIPGRSWIEC 419
           +++   M  E G++  P R    C
Sbjct: 475 EKLFSSMINEHGIS--PTREHYGC 496


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 259/457 (56%), Gaps = 33/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR++  WN +I  Y++ G +E    L+R M++  V  PD  T    L+AC    D+  
Sbjct: 123 MPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGV-EPDNFTYPLALKACAALLDLET 181

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH  V+ +H   D+++C  L+ MYAKCG +D ARA+ D +  +D V           
Sbjct: 182 GREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSV----------- 230

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+   QN R    L L R+M A+GV P   T+ S 
Sbjct: 231 --------------------VWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVST 270

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L  G+E+HG+  +  +DR   + T+++D YAK+G++  A+ +F++   R L
Sbjct: 271 ISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + W A+I  Y  HG   +A+ LFN+M +   + PD +TF  VLSAC H G+V +A + F 
Sbjct: 331 VSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFG 390

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y I+P+V+H+ C+V VL  A R  EA + +  MP++P + +WGALL G  I  +V
Sbjct: 391 LMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNV 450

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+     L E+EPE+ GNY++++N+Y+Q+G+W++A RVR+ M   GL KI G SWIE 
Sbjct: 451 ELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIEL 510

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G    F+  D S  +S +IY  LERL GLM + GY+
Sbjct: 511 KGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYM 547



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 31/238 (13%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
            SVLQ+C  S  +  G ++H  ++ S +  D  +   L+ +YA CG + +AR L      
Sbjct: 66  TSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRL------ 119

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                                    F  M +  +  WN +I    ++  HE  + L R M
Sbjct: 120 -------------------------FDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGM 154

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              GV P+  T        +   +L+ G+E+H   +   +  +++V   ++D YAK G +
Sbjct: 155 VDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCV 214

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
             A+ VFDR + R  ++W ++I+AY  +G   +A+SL  +M  NG+ P   T  + +S
Sbjct: 215 DDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTIS 272


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 169/453 (37%), Positives = 266/453 (58%), Gaps = 40/453 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I  W  +    ++ GFYEE  + F EM     LRP+   + S+L+ACG  SD   G  +
Sbjct: 92  NIRRWIVLTGACARRGFYEEALSAFSEM-QKEGLRPNQFVLPSILKACGHLSDRRTGENM 150

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  ++++  + D +I +ALI MY+KCG ++ A  + D + DKD V  +A++SGY  HGFV
Sbjct: 151 HTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFV 210

Query: 125 EKAMDLFQVMKR---------------------------------------PGLSTWNAV 145
            +A++L Q M++                                       P + +W +V
Sbjct: 211 HEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSV 270

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           ISG VQN  +    D  +EM   G  P++VTISS+    ++ +NL+ GKEIHGYA+    
Sbjct: 271 ISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGV 330

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           ++++YV +A++D YAK G++  A+ +F     R+ + W ++I  YA HG  ++A+ LFN+
Sbjct: 331 EKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQ 390

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M  +  + D +TFTAVL+AC+H+G+V+    +F  M  +Y I+P +EHYACMV +L RA 
Sbjct: 391 MEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAG 450

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           ++SEA + +  MPV+P   VWGALL      G++EL +   +HLFE+EPE+ G+ ++++N
Sbjct: 451 KLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSN 510

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           LY+ AGRW  A ++++ MK+    K PG SWIE
Sbjct: 511 LYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 84  IGMYAKCGSLDYARALLDEMS--DKDEVSYSA--IISGYMVHGFVEKAMDLFQVMKRPGL 139
           I MYA+  +L   RAL   +       ++Y A  ++S Y   G +  A  LF  +    +
Sbjct: 34  IDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNI 93

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
             W  +     +   +E  L    EMQ  G+RPN   + SI     H S+ + G+ +H  
Sbjct: 94  RRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTV 153

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            +KN ++ + Y+ +A+I  Y+K G +  A RVFD    + L++  A++S YA HG   +A
Sbjct: 154 ILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEA 213

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
           ++L  +M   G++P+ V++  +++  +  G      ++F  M+   G++P V
Sbjct: 214 LNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN-GVEPDV 264



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 40/203 (19%)

Query: 3   KRDIVSWNSMIAGYSQ------------------------------GGFYE-----ECKA 27
           K ++VSWN++IAG+SQ                               GF +     E   
Sbjct: 226 KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFD 285

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
            F+EML+     P  VT+ S+L AC   +++  G E+H + +   ++ D+++ +AL+ MY
Sbjct: 286 AFKEMLDQGFC-PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMY 344

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWN 143
           AKCG +  A+ L   M +++ V+++++I GY  HG+  +A++LF  M+         T+ 
Sbjct: 345 AKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 404

Query: 144 AVISGLVQNNRHEAVLDLVREMQ 166
           AV++        E    L R+MQ
Sbjct: 405 AVLNACSHAGMVELGESLFRKMQ 427



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 43/221 (19%)

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T +    +++    L  G+ +H + V     R  Y A  ++  Y + G L  A+++FD+ 
Sbjct: 29  TYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 88

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-------- 287
              ++  W  +  A A  G   +A+S F+EM   G++P+     ++L AC H        
Sbjct: 89  PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGE 148

Query: 288 ---------------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
                                       G V+KA  +F+     + +   +     MV  
Sbjct: 149 NMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD-----WIVDKDLVVMNAMVSG 203

Query: 321 LSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
            ++   + EA   V KM    VKP+   W  L+ G S  GD
Sbjct: 204 YAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 244



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V+WNS+I GY+  G+  E   LF +M  S   + D +T  +VL AC  +  +  
Sbjct: 360 MPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDT-KLDHLTFTAVLNACSHAGMVEL 418

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G  +   + E +    +++ + C  ++ +  + G L  A  L+  M  + D+  + A++ 
Sbjct: 419 GESLFRKMQEKYRIEPRLEHYAC--MVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 476

Query: 117 GYMVHGFVEKA 127
               HG +E A
Sbjct: 477 ACRNHGNIELA 487


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 276/472 (58%), Gaps = 9/472 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +++V +N++++ Y + G   E  A+  EML + P  RPD +T++S + AC +  D+  G 
Sbjct: 304 KNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGP--RPDRITMLSAVSACSELDDVSCGK 361

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
             H +V+ + ++    +CNA+I MY KCG  + A  + D M +K  VS++++I+G++ +G
Sbjct: 362 WCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNG 421

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A  +F  M    L +WN +I  LVQ +  +  ++L R MQ+ G+  + VT+  + S
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVAS 481

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
              +   L   K IHGY  K     ++++ TA++D +A+ G    A +VF++   R +  
Sbjct: 482 ACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSA 541

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA I A A  G+ + A+ LF+EML  GI+PD V F A+L+A +H GLV++ W IF +M 
Sbjct: 542 WTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMK 601

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             YGI P   HY CMV +L RA  +SEA   ++ M ++P+  +WG+LL    +  +V++ 
Sbjct: 602 DIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIA 661

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
            +  + + E++PE TG +++++N+Y+ AGRWD+  +VR  +KE G  K+PG S IE +G 
Sbjct: 662 AYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGK 721

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAYV 468
           +  F   D S  +   I  +L+ +   +R+ GY      VLLD  E+E  Y+
Sbjct: 722 IFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYL 773



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 201/468 (42%), Gaps = 110/468 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSW S+I GY++ G Y+E  +LF EM+   + RP+ VT+V V+ AC +  D+  
Sbjct: 200 MSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGI-RPNSVTMVGVISACAKLQDLQL 258

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V   + E  ++++  + NAL+ MY KCG++D AR + DE  DK+ V Y+ I+S Y+ 
Sbjct: 259 GEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVR 318

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +                               VL ++ EM   G RP+ +T+ S 
Sbjct: 319 QGLARE-------------------------------VLAVLGEMLKHGPRPDRITMLSA 347

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S   ++  GK  HGY ++N  +    V  AII+ Y K G    A RVFDR   ++ 
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407

Query: 241 IIWTAIISAYAAHGDA-------------------------------SKAVSLFNEMLNN 269
           + W ++I+ +  +GD                                 +A+ LF  M + 
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSE 467

Query: 270 GIQPDPVTFTAVLSACAHSGLVD-----------------------------------KA 294
           GI  D VT   V SAC + G +D                                    A
Sbjct: 468 GITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSA 527

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLY 351
             +FN M     ++  V  +   +G ++     + A E   +M    +KP   V+ ALL 
Sbjct: 528 MQVFNKM-----VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLT 582

Query: 352 GASISGDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
             S  G VE G  +      ++ I P+   +Y  M +L  +AG   EA
Sbjct: 583 ALSHGGLVEQGWHIFRSMKDIYGIAPQAV-HYGCMVDLLGRAGLLSEA 629



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 146/278 (52%), Gaps = 32/278 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           ++S+I G+S  G   +   +FR+++    + PD  T   VL AC +S+ +  G +VH  +
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAV-PDNFTFPFVLSACTKSAALTEGFQVHGAI 165

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++   + D+++ N+LI  Y +CG +D  R + D+MS+++ VS++++I GY   G  ++A+
Sbjct: 166 VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF                                EM   G+RPN+VT+  + S  +   
Sbjct: 226 SLF-------------------------------FEMVEVGIRPNSVTMVGVISACAKLQ 254

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G+++     +   + N  +  A++D Y K G +  A+++FD    ++L+++  I+S
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            Y   G A + +++  EML +G +PD +T  + +SAC+
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACS 352



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 116/217 (53%), Gaps = 18/217 (8%)

Query: 85  GMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHG------FVEKAMDLFQVM 134
           G + KC ++   + L  +++    +   +S + +IS     G      + +KA++LF  +
Sbjct: 38  GSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELF--I 95

Query: 135 KRPGLSTWNAVISGLVQNNR-----HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +  G+   + + S L++        ++A++ + R++   G  P+  T   + S  +  + 
Sbjct: 96  EDNGIMGTHYMFSSLIRGFSACGLGYKAIV-VFRQLMCMGAVPDNFTFPFVLSACTKSAA 154

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L  G ++HG  VK  ++R+++V  ++I  Y + G +   +RVFD+   R+++ WT++I  
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           YA  G   +AVSLF EM+  GI+P+ VT   V+SACA
Sbjct: 215 YAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACA 251



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 109/257 (42%), Gaps = 42/257 (16%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGF---LHGAQRVFDRFKGRSLII-----WTA 245
           K++H    KN  + +    T +I +  + G    L  AQ+  + F   + I+     +++
Sbjct: 50  KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSS 109

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM---- 301
           +I  ++A G   KA+ +F +++  G  PD  TF  VLSAC  S  + + + +  A+    
Sbjct: 110 LIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMG 169

Query: 302 -SGQYGIQPSVEHYACMVGVLSRARRI-------------------------SEATEFVS 335
                 ++ S+ H+    G +   RR+                          EA     
Sbjct: 170 FERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFF 229

Query: 336 KM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAG 391
           +M    ++P++     ++   +   D++LG+ VC  + E+E E N      + ++Y + G
Sbjct: 230 EMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCG 289

Query: 392 RWDEADRVREQMKESGL 408
             D+A ++ ++  +  L
Sbjct: 290 AIDKARKIFDECVDKNL 306


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 248/453 (54%), Gaps = 32/453 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN +I  Y++ G  E    L+REML    + PD  T   VL+AC    D+  G EV
Sbjct: 129 NVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREV 188

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V+ +    D+++C  LI MYAKCG +D A A+ D  + +D V               
Sbjct: 189 HDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAV--------------- 233

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++I+   QN R    L L R M A G+ P  VT+ S  S  
Sbjct: 234 ----------------VWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAA 277

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G+E+HGY  +  +     + T+++D YAK+G++  A+ +FD+   R LI W 
Sbjct: 278 ADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWN 337

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           A+I  +  HG A  A  LF  M N   + PD +TF  VLSAC H G+V +A ++F+ M  
Sbjct: 338 AMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVT 397

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y I+P V+HY C+V VL  + R  EA++ +  M VKP + +WGALL G  I  +VEL +
Sbjct: 398 VYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAE 457

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E+EPE+ GNY++++N+Y+Q+G+W+EA RVR+ M   GL KI   SWIE  G  
Sbjct: 458 LALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKS 517

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F+  D S  +S++IY  LERL GL+ + GYV
Sbjct: 518 HGFLVGDASHPRSDEIYEELERLEGLISQTGYV 550



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 25/197 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD V WNSMIA   Q G   E  AL R M    +  P  VT+VS + A   +  +  G E
Sbjct: 230 RDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIA-PTIVTLVSAISAAADAGALPRGRE 288

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +           +  +L+ MYAK G +  AR L D++  ++ +S++A+I G+ +HG 
Sbjct: 289 LHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGH 348

Query: 124 VEKAMDLFQVMKR-----PGLSTWNAVIS-----GLVQNNRHEAVLDLVREMQASGVRPN 173
            + A +LF+ M+      P   T+  V+S     G+VQ  +   V DL+           
Sbjct: 349 ADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKE--VFDLM----------- 395

Query: 174 AVTISSIFSLFSHFSNL 190
            VT+ SI  +  H++ L
Sbjct: 396 -VTVYSIKPMVQHYTCL 411



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIIS 248
           ++ G+++H   + +    +  +AT ++D YA  G +  A+R+FD    + ++ +W  +I 
Sbjct: 79  VRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIR 138

Query: 249 AYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACA 286
           AYA  G    A+ L+ EML  G ++PD  T+  VL ACA
Sbjct: 139 AYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACA 177



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+++SWN+MI G+   G  +    LFR M N   + PD +T V VL AC     +    E
Sbjct: 331 RELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKE 390

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVH 121
           V + ++  + IK  +     L+ +    G    A  ++  M  K D   + A+++G  +H
Sbjct: 391 VFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIH 450

Query: 122 GFVEKA 127
             VE A
Sbjct: 451 KNVELA 456


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/460 (36%), Positives = 269/460 (58%), Gaps = 8/460 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN +I+GY +   YE+   +FR M     LRP+  TVVS L AC     +  
Sbjct: 193 MPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLEL 252

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +V E  +   + I NAL+ MY KCG L  AR + ++M  K  + +++++SGY+ 
Sbjct: 253 GKEIHRYVRE-QLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVN 311

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +++A +LF+      +  W A+I+G VQ NR +  + L REMQ   V P+  T+ ++
Sbjct: 312 CGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVAL 371

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IHGY  +N+   +  V TA+I+ YAK GF+  +  +F+  K +  
Sbjct: 372 LTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDT 431

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT+II   A +G  SKA+ LF EM+  G++PD +TF  VLSAC+H GLV++    F +
Sbjct: 432 ASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRS 491

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
           M+  Y I+P +EHY C++ +L RA ++ EA E + K P   +     ++GALL      G
Sbjct: 492 MTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHG 551

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +VE+G+ V   L  IE  ++  + ++AN+Y+ A RW++  +VR +MK+ G+ K+PG S +
Sbjct: 552 NVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 611

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILER----LLGLMREE 453
           E +G +  F+  D S  +  +IY +L+     LLGL   E
Sbjct: 612 EVNGIVHEFLVGDASHPEMREIYSMLDSIAKPLLGLDENE 651



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 201/470 (42%), Gaps = 118/470 (25%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N +I  +++ G + +   LFR+ L    L PD  T   V +A G   ++  G +V+ FV
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQ-LREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++S ++ D ++CN+L+ MYA+ G +   R + +EM  +D VS++ +ISGY          
Sbjct: 159 VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGY---------- 208

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSLFSHF 187
                                V+  R+E  +D+ R M Q S +RPN  T+ S  S     
Sbjct: 209 ---------------------VKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIAL 247

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV---------------- 231
             L+ GKEIH Y V+ +    I +  A++D Y K G L  A+ +                
Sbjct: 248 KMLELGKEIHRY-VREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMV 306

Query: 232 ---------------FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
                          F+R   R +++WTA+I+ Y        AV+LF EM    + PD  
Sbjct: 307 SGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRF 366

Query: 277 TFTAVLSACAH-----------------------------------SGLVDKAWDIFNAM 301
           T  A+L+ CA                                     G ++K+ +IFN +
Sbjct: 367 TLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGL 426

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
                 +     +  ++  L+   + S+A E  ++M    VKP    +  +L   S  G 
Sbjct: 427 K-----EKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGL 481

Query: 359 VELGKFVCDH------LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402
           VE G+    H      +++IEP+   +Y  + +L  +AG+ DEA+ + E+
Sbjct: 482 VEEGR---KHFRSMTAVYQIEPK-LEHYGCLIDLLGRAGQLDEAEELIEK 527



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 134/285 (47%), Gaps = 9/285 (3%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  A  +F  +  PGL  +N VI    +N      + L R+++  G+ P+  T   +F
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                   ++ G++++G+ VK+  + + YV  +++D YA+ G +   ++VF+    R ++
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199

Query: 242 IWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            W  +IS Y        AV +F  M   + ++P+  T  + LSAC    +++   +I   
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  Q G    + +   +V +  +   +S A E  + MP+K +   W +++ G    G ++
Sbjct: 260 VREQLGFTIKIGN--ALVDMYCKCGHLSIAREIFNDMPIK-TVICWTSMVSGYVNCGQLD 316

Query: 361 LGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             +     LFE  P  +   +  M N Y Q  R+D+A  +  +M+
Sbjct: 317 EAR----ELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQ 357


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 265/469 (56%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++I G ++   ++E  ++ REM     + PD  T+ +VL    + +DI  
Sbjct: 130 MLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM-PDTFTLSTVLPIFAECADIKR 188

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH + I++    D+++ ++LI MYA C  +DY+  + D  SD D V           
Sbjct: 189 GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAV----------- 237

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++G  QN   E  L + R M  +GVRP  VT SS+
Sbjct: 238 --------------------LWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSL 277

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F + S L+ GK++H Y ++ R++ NI++++++ID Y K G +  A+RVF+  +   +
Sbjct: 278 IPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDI 337

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  YA HG  ++A  LF  M    ++P+ +TF AVL+AC+H+GLVD  W  FN+
Sbjct: 338 VSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNS 397

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS QYG  PS+EH A +   L RA  + EA  F+S+M +KP++ VW  LL    +  +  
Sbjct: 398 MSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTV 457

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   +FE+EP++ G+++I++N+YS +GRW+EA ++R+ M+  G+ K P  SWIE  
Sbjct: 458 LAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVK 517

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             L  F+A D S    ++I   L      M  +GYV     +L ++EEE
Sbjct: 518 NKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEE 566


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 258/451 (57%), Gaps = 32/451 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V  ++MI+GY   G  +E   +FR +L   + RP+ V + SVL AC   + +  G E+
Sbjct: 413 DVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI-RPNAVAIASVLPACASMAAMKLGQEL 471

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H++ +++  +   ++ +AL+ MYAKCG LD +  +  ++S KDEV               
Sbjct: 472 HSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEV--------------- 516

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                           TWN++IS   QN   E  L+L REM   GV+ + VTISS+ S  
Sbjct: 517 ----------------TWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    +  GKEIHG  +K     +++  +A+ID Y K G L  A RVF+    ++ + W 
Sbjct: 561 ASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWN 620

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II++Y A+G   ++VSL   M   G + D VTF A++SACAH+G V +   +F  M+ +
Sbjct: 621 SIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE 680

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EH+ACMV + SRA ++ +A E +  MP KP A +WGALL+   +  +VEL + 
Sbjct: 681 YQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEI 740

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               LF+++P N+G Y++M+N+ + AGRWD   +VR  MK++ + KIPG SW++ +    
Sbjct: 741 ASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSH 800

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            FVA D S   SE IY+ L+ +L  +REEG+
Sbjct: 801 LFVAADKSHPDSEDIYMSLKSILLELREEGH 831



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 161/286 (56%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D+V+WN MI+G  Q GF ++   LF +M  S + RPD VT+VS+L A    +    
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI-RPDSVTLVSLLPALTDLNGFNQ 366

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +++ + + MD+++ +AL+ +Y KC ++  A+++ D     D V  S +ISGY++
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++A+ +F                               R +   G+RPNAV I+S+
Sbjct: 427 NGMSQEAVKMF-------------------------------RYLLEQGIRPNAVAIASV 455

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + +K G+E+H YA+KN Y+   YV +A++D YAK G L  +  +F +   +  
Sbjct: 456 LPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDE 515

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + W ++IS++A +G+  +A++LF EM   G++   VT ++VLSACA
Sbjct: 516 VTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACA 561



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD V WN M+ GY + G       LF +M  S    P+  T+   L      SD+ F
Sbjct: 207 MAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGC-EPNFATLACFLSVSATESDLFF 265

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H   ++  ++ ++ + N L+ MYAKC  LD                          
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD-------------------------- 299

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    LF +M R  L TWN +ISG VQN   +  L L  +MQ SG+RP++VT+ S+
Sbjct: 300 -----DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSL 354

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  +    GKE+HGY V+N    ++++ +A++D Y K   +  AQ V+D  K   +
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +I + +IS Y  +G + +AV +F  +L  GI+P+ V   +VL ACA
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 32/279 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + WN +I G +  G Y      + +M   P    PD  T   V+++C     I  G  VH
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                  +  D+++ +ALI MYA  G L  AR + D M+++D V ++ ++ GY+  G V 
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A++LF                                +M+ASG  PN  T++   S+ +
Sbjct: 230 SAVELFG-------------------------------DMRASGCEPNFATLACFLSVSA 258

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             S+L  G ++H  AVK   +  + VA  ++  YAK   L    ++F       L+ W  
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +IS    +G   +A+ LF +M  +GI+PD VT  ++L A
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 137/335 (40%), Gaps = 50/335 (14%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIK-MDLWICNALIGMYAKCGSLDYARALLDEM 103
           +++VL+ C   S +  G++VH   + + +   D  +   L+GMY        AR   D  
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYV------LARRFRD-- 93

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLD 160
                                  A+ +F  + R   +    WN +I GL     + + L 
Sbjct: 94  -----------------------AVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALL 130

Query: 161 LVREMQA--SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
              +M A  S   P++ T   +    +    +  G+ +H  A     D +++V +A+I  
Sbjct: 131 FYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKM 190

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           YA  G L  A++VFD    R  ++W  ++  Y   G  S AV LF +M  +G +P+  T 
Sbjct: 191 YANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATL 250

Query: 279 TAVLSACAHSGLVDKAWDIF-----NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
              LS  A         D+F     + ++ +YG++  V     +V + ++ + + +  + 
Sbjct: 251 ACFLSVSATES------DLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKL 304

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFV-CD 367
              MP +     W  ++ G   +G V+    + CD
Sbjct: 305 FGLMP-RDDLVTWNGMISGCVQNGFVDQALLLFCD 338


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 262/458 (57%), Gaps = 33/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++++D+VSWNS+++GY++ GF  E   +F  +       PD +++VSVL ACG+  D+  
Sbjct: 178 ITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLEL 237

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E  +K++ +I +ALI MY+KCG L  +R + D M  +D +           
Sbjct: 238 GRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFI----------- 286

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNA IS   QN   +  + L   M+ +GV PN VT++++
Sbjct: 287 --------------------TWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAV 326

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK++  YA       +I+VATA+ID YAK G L  AQRVF+    ++ 
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND 386

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             W A+ISA A+HG A +A+SLF  M + G   +P+ +TF ++LSAC H+GLVD+ + +F
Sbjct: 387 ASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLF 446

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EHY+CMV +LSRA  + EA + + KMP KP     GAL        +
Sbjct: 447 DMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKN 506

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++G+ V   L E++P N+GNYII + +Y     WD+A R+R  M+E+G+ K PG SWIE
Sbjct: 507 VDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIE 566

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               L+ F++ D     S  +  I++ L   +++EGY+
Sbjct: 567 VGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYL 604



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 172/369 (46%), Gaps = 35/369 (9%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           + P+  T   V  AC    +I      H  V +  +  D    N+++ MY +CG    AR
Sbjct: 113 ISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVAR 172

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + DE+++KD VS+++++SGY   GF  +A+++F  ++                      
Sbjct: 173 KVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLR---------------------- 210

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
                   + SG  P+ +++ S+        +L+ G+ + G+ V+     N Y+ +A+I 
Sbjct: 211 --------EESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALIS 262

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y+K G L  ++R+FD    R  I W A ISAYA +G A +A+SLF+ M  NG+ P+ VT
Sbjct: 263 MYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            TAVLSACA  G +D    + +  +   G+Q  +     ++ + ++   +  A    + M
Sbjct: 323 LTAVLSACASIGALDLGKQM-DEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS---QAGRWD 394
           P K  A  W A++   +  G  +    + + + +       N I   +L S    AG  D
Sbjct: 382 PRKNDAS-WNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVD 440

Query: 395 EADRVREQM 403
           E  R+ + M
Sbjct: 441 EGYRLFDMM 449



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           S+     LL +     + +YS +I  ++     + A   F +M R   +TW+        
Sbjct: 48  SIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA---FNIMLRATTTTWH-------- 96

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
              +   L L  +M+   + PN  T   +F   ++   ++  +  H    K   D + + 
Sbjct: 97  --DYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHT 154

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNG 270
             +++  Y + G    A++VFD    + L+ W +++S YA  G A +AV +F  +   +G
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESG 214

Query: 271 IQPDPVTFTAVLSACAHSG 289
            +PD ++  +VL AC   G
Sbjct: 215 FEPDEMSLVSVLGACGELG 233


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 270/466 (57%), Gaps = 8/466 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I   S      E   L+  ML S  L+PD +T   V++AC +SS   FG+ VH  V
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSG-LKPDHMTYPFVIKACNESSVTWFGLLVHTHV 192

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++S  + D +I ++LI +YA    L  A+ L +  S +D VS++A+I GY+ H  +  A 
Sbjct: 193 VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHAR 252

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F  M    + +WN +I+G     +    L L  +M+A GV+P   T+ S+ S  +H  
Sbjct: 253 MVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLG 312

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  G  +H Y   NR + N  V TA++D YAK G +  A +VF+  + + ++ W  II+
Sbjct: 313 ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIA 372

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
             A HG+  +A  LF EM   G++P+ +TF A+LSAC+H+G+VD+   + + MS  YGI+
Sbjct: 373 GMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIE 432

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P VEHY C++ +L+RA  + EA E +  MP++P+    GALL G  I G+ ELG+ V   
Sbjct: 433 PKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKR 492

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           L  ++P ++G YI+++N+Y+ A +WD+A +VR  MK +G++K+PG S IE  G +  FVA
Sbjct: 493 LINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVA 552

Query: 429 KDTSGDKSEQIYLILERL-------LGLMREEGYVLLDEVEEESAY 467
            D S  +S +IY  L  +       +G   + G VLLD  EE+  +
Sbjct: 553 GDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEH 598



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 41/237 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN+MI GY+  G   E  ALF +M    V +P   TVVS+L AC     +  
Sbjct: 258 MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLGALDK 316

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H ++ ++ I+++  +  AL+ MYAKCG +  A  + + M  KD ++++ II+G  +
Sbjct: 317 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 376

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V++A  LF                               +EM+ +GV PN +T  +I
Sbjct: 377 HGNVKEAQQLF-------------------------------KEMKEAGVEPNDITFVAI 405

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            S  SH   +  G+++       Y ++ + +        +ID  A+ GFL  A  + 
Sbjct: 406 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH----YGCVIDLLARAGFLEEAMELI 458



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 144/317 (45%), Gaps = 36/317 (11%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           F+  A  +F  ++ P  S +N++I  L  +      L L   M  SG++P+ +T   +  
Sbjct: 115 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 174

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S    G  +H + VK+ ++ + Y+ +++I  YA    L  A+++F+    R ++ 
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 234

Query: 243 WTAIISAYAAH-------------------------------GDASKAVSLFNEMLNNGI 271
           W A+I  Y  H                               G  ++A++LF++M   G+
Sbjct: 235 WNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGV 294

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
           +P   T  ++LSACAH G +DK   +   ++       S+   A +V + ++  +IS AT
Sbjct: 295 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA-LVDMYAKCGKISLAT 353

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMANLYSQ 389
           +  + M  K     W  ++ G +I G+V+  + +   + E  +EP N   ++ + +  S 
Sbjct: 354 QVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP-NDITFVAILSACSH 411

Query: 390 AGRWDEADRVREQMKES 406
           AG  DE  ++ + M  S
Sbjct: 412 AGMVDEGQKLLDCMSSS 428



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+++WN++IAG +  G  +E + LF+EM  + V  P+ +T V++L AC  +  +  
Sbjct: 359 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGV-EPNDITFVAILSACSHAGMVDE 417

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G ++ + +  S+    K++ + C  +I + A+ G L+ A  L+  M  + +  +  A++ 
Sbjct: 418 GQKLLDCMSSSYGIEPKVEHYGC--VIDLLARAGFLEEAMELIGTMPMEPNPSALGALLG 475

Query: 117 GYMVHGFVE 125
           G  +HG  E
Sbjct: 476 GCRIHGNFE 484


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/493 (33%), Positives = 280/493 (56%), Gaps = 46/493 (9%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + +WN++++G ++ G   E  A+ R ML    L PD  TV S+L++   +  +  GMEVH
Sbjct: 272 LATWNAVLSGCARHGRDREALAVLRRMLEQG-LWPDATTVSSLLKSVANAGMVRHGMEVH 330

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F +   +  D +   AL+ MYAKCG LD AR + D +  ++  +++++++G+   G  E
Sbjct: 331 CFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFE 390

Query: 126 KAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
            A++L + MKR    P ++TWN +I+G   N      + L+R+++A+G+ PN V+ +S+ 
Sbjct: 391 AALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLI 450

Query: 182 SLFSH-----------------------------------FSNLKGGKEIHGYAVKNRYD 206
           S   H                                    + LK GKE+H +A++  YD
Sbjct: 451 SGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALRRAYD 510

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            ++ V TA+ID Y+K G L  A+R+F R + ++L+   A+++  A HG + +A++LF+++
Sbjct: 511 CDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLFHDL 570

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
             +G++PD +TFTA+L+AC   GL+ + W+ F+ M  +YG+ P+ E+YACMV +L+R+  
Sbjct: 571 WRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGY 630

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + EA   + + PV P A +WGALL G SI G+++L +    +LF +EP N+ NY+++ +L
Sbjct: 631 LDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSANYLMIMSL 690

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y     +DEAD ++  MK  G+   PG SWI+   G+  F   +  G    +   I E L
Sbjct: 691 YEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVF---EVDGSPHPETAEICEEL 747

Query: 447 LGLMRE---EGYV 456
           + L+R+    GYV
Sbjct: 748 MSLVRQIKMTGYV 760



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 203/417 (48%), Gaps = 16/417 (3%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V WN  +A  ++ G ++E    FREM    V   DG  +  VL ACG+++    G  
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVA-ADGYALARVLHACGRAAARREGKA 190

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARA-LLDEMSDKDEVSYSAIISGYMVH 121
           VH   +++  +     +   L GMYA+   +  A A LL        V++ A+++  +  
Sbjct: 191 VHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRL 250

Query: 122 GFVEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           G V+ AM+L   M R    P L+TWNAV+SG  ++ R    L ++R M   G+ P+A T+
Sbjct: 251 GLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTV 310

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           SS+    ++   ++ G E+H + +++    + Y  TA++D YAK G L  A+RVFD  + 
Sbjct: 311 SSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEH 370

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+L  W ++++ +A  G    A+ L   M  N + P+  T+  +++  + +GL  +A  +
Sbjct: 371 RNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLL 430

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGAS 354
              +    G+ P+V  +  ++          ++  F  +M    V+PS      LL   +
Sbjct: 431 LRQIKAA-GLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACA 489

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
               ++ GK +  H F +      + ++   + ++YS+AG    A R+  +++   L
Sbjct: 490 GLALLKKGKEL--HCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNL 544



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 141/309 (45%), Gaps = 49/309 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++VSW S+I+G    G YE+    F+EM    V +P  VT++ +L+AC   + +  G E+
Sbjct: 442 NVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGV-QPSLVTMLVLLRACAGLALLKKGKEL 500

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H F +      D+ +  ALI MY+K GSL  A+ +   + +K+ V  +A+++G  VHG  
Sbjct: 501 HCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQS 560

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+ LF                            DL R    SG++P+++T +++ +  
Sbjct: 561 HEAITLFH---------------------------DLWR----SGLKPDSITFTALLTAC 589

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATA-----IIDTYAKTGFLHGAQRVFDRF---K 236
                +  G E       N   +   V TA     ++D  A++G+L  A  + +R     
Sbjct: 590 RSMGLITEGWEY----FDNMETKYGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDP 645

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAW 295
           G SL  W A+++  + HG+   A      +    ++P +   +  ++S   H  + D+A 
Sbjct: 646 GASL--WGALLTGCSIHGNLDLAEVAARNLFR--LEPYNSANYLMIMSLYEHEQMYDEAD 701

Query: 296 DIFNAMSGQ 304
            +  AM  +
Sbjct: 702 SLKYAMKAR 710



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 10/222 (4%)

Query: 195 EIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFK----GRSLIIWTAIISA 249
           ++H  AV+  +  R   VA A+ D  A+ G    ++R+ +       G+  ++W   ++ 
Sbjct: 84  QLHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAM 143

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD--KAWDIFNAMSGQYGI 307
            A  G+  +A+  F EM   G+  D      VL AC  +      KA       +G    
Sbjct: 144 LAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAGLVDA 203

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
            P V  +  + G+ +    ++ AT  + +    P +  W A++      G V+    +  
Sbjct: 204 HPLVPGF--LAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAG 261

Query: 368 HLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +    PE T   +  + +  ++ GR  EA  V  +M E GL
Sbjct: 262 RMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGL 303



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++V  N+M+ G +  G   E   LF ++  S  L+PD +T  ++L AC     I  
Sbjct: 539 IQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSG-LKPDSITFTALLTACRSMGLITE 597

Query: 61  G------MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSA 113
           G      ME    V+ +    + + C  ++ + A+ G LD A AL++    D     + A
Sbjct: 598 GWEYFDNMETKYGVVPT---AENYAC--MVDLLARSGYLDEAMALIERSPVDPGASLWGA 652

Query: 114 IISGYMVHGFVEKAMDLFQVMKR 136
           +++G  +HG     +DL +V  R
Sbjct: 653 LLTGCSIHG----NLDLAEVAAR 671


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 259/438 (59%), Gaps = 1/438 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALF-REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           RD+VSWN++I GY + G   E   LF R + +   +RPD VT++  +  C Q  D+  G 
Sbjct: 185 RDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGK 244

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H FV    ++  + + NA++ MY KCGSL+ A+++ + + +K  VS++ +I G+   G
Sbjct: 245 RLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLG 304

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A  LF  M    +  WNA+++G VQN + +  + L  EMQ S V PN +T+ ++ S
Sbjct: 305 MMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLS 364

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S    L+ G  +H Y  +++   ++ + T+++D YAK G +  A  +F     ++ + 
Sbjct: 365 ACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALT 424

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I   A HG A +A+  F  M++ G+QPD +TF  VLSAC H+GLV +    F+ M 
Sbjct: 425 WTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMH 484

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +Y ++  ++HY+CM+ +L RA  + EA + V+ MP+ P A VWGAL +   + G++ LG
Sbjct: 485 EKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLG 544

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     L E++P ++G Y+++AN+Y++A    +AD+VR  M+  G+ K+PG S IE +G 
Sbjct: 545 EKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGV 604

Query: 423 LQSFVAKDTSGDKSEQIY 440
           +  F+ KD S   +  IY
Sbjct: 605 VHEFIVKDKSHLDTIAIY 622



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 165/345 (47%), Gaps = 14/345 (4%)

Query: 23  EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82
             C  L+R +L S   RPD +T   +L+AC +     +G  V   V +     D+++ NA
Sbjct: 102 RHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNA 161

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM------KR 136
            +  ++  GS+  AR L DE   +D VS++ +I GY+  G   +A++LF  +       R
Sbjct: 162 GVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVR 221

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   T    +SG  Q    E    L   + + GVR     ++++  ++    +L+  K  
Sbjct: 222 PDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAK-- 279

Query: 197 HGYAVKNRYDRNIYVA-TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
              +V  R D    V+ T +I  +A+ G +  A+ +FD    R +  W A+++ Y  +  
Sbjct: 280 ---SVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQ 336

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             +A++LF+EM  + + P+ +T   +LSAC+  G ++    + + +  ++ +  SV    
Sbjct: 337 GKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYID-RHQLYLSVALGT 395

Query: 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            +V + ++   I +A     ++P K +A  W A++ G +  G  +
Sbjct: 396 SLVDMYAKCGNIKKAICIFKEIPDK-NALTWTAMICGLANHGHAD 439



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 127/259 (49%), Gaps = 34/259 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+  WN+++AGY Q    +E  ALF EM  S V  P+ +T+V++L AC Q   +  
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKV-DPNEITMVNLLSACSQLGALEM 374

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH+++    + + + +  +L+ MYAKCG++  A  +  E+ DK+ ++++A+I G   
Sbjct: 375 GMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLAN 434

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  ++A++ FQ M                        +DL       G++P+ +T   +
Sbjct: 435 HGHADEAIEYFQRM------------------------IDL-------GLQPDEITFIGV 463

Query: 181 FSLFSHFSNLKGGKEIHGYA-VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GR 238
            S   H   +K G++       K   +R +   + +ID   + G L  A+++ +      
Sbjct: 464 LSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDP 523

Query: 239 SLIIWTAIISAYAAHGDAS 257
             ++W A+  A   HG+ +
Sbjct: 524 DAVVWGALFFACRMHGNIT 542


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 265/469 (56%), Gaps = 9/469 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++++WN +++G ++ G   +       M    +LRPD   V   L A G    +  G ++
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQL 179

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + +++  + D  +  ALI MY KCG       + DE S  D  S +A+I+G   +  V
Sbjct: 180 HGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQV 239

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            +A+ LF+     G+     +W ++++  VQN +    ++  REMQA G  PN+VTI  +
Sbjct: 240 CEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCV 299

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F++ + L  G+  H +A++  +  ++YV++A++D YAK G +  A+ +FD    R++
Sbjct: 300 LPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNV 359

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  YA +G+A  AV +F+ ML    +PD VTFT +L+AC  +GL ++    F  
Sbjct: 360 VSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKE 419

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YG+ P +EHYACMV +L RA ++ EA + +S MP +P A +WG+LL    + G+V+
Sbjct: 420 MHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVD 479

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LF +EPEN GNY++++N+Y+    WD  +RVRE MK+ GL K  G SWIE  
Sbjct: 480 LAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIK 539

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +   +A D S      I   + +L   MR+ G+V     +L +VEE+
Sbjct: 540 NKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQ 588



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 139/287 (48%), Gaps = 12/287 (4%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD   + +  ++C     +     +H     S +  D ++ ++L+  Y + G+   ARAL
Sbjct: 18  PDPHLLPTAFKSC---PTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 100 LDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR-----PGLSTWNAVISGLVQN 152
            D M    +  V +SA+++ +   G  E A  L + M+R     P + TWN ++SGL ++
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 153 NRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
            R    +  +  M   G +RP+A  +S   S       +  G+++HGYAVK     +  V
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACV 194

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
            TA+ID Y K G      RVFD      +    A+I+  + +    +A+ LF E ++ G+
Sbjct: 195 VTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGV 254

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           + + V++T++++ C  +G   +A + F  M  Q G +P+     C++
Sbjct: 255 ELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVTIPCVL 300



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 39/228 (17%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV------------------------ 37
           S  D+ S N++IAG S+     E   LF+E ++  V                        
Sbjct: 219 SHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAV 278

Query: 38  ----------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
                       P+ VT+  VL A    + ++ G   H F +      D+++ +AL+ MY
Sbjct: 279 EFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMY 338

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM----KRPGLSTWN 143
           AKCG +  AR + D M  ++ VS++A+I GY ++G    A+ +F  M    ++P + T+ 
Sbjct: 339 AKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFT 398

Query: 144 AVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNL 190
            +++   Q    E      +EM    GV P     + + +L      L
Sbjct: 399 CLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKL 446



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN+MI GY+  G       +F  ML     +PD VT   +L AC Q+     
Sbjct: 354 MVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCK-QKPDMVTFTCLLAACTQAGLTEE 412

Query: 61  GM----EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAII 115
           G     E+HN    S  +M+ + C  ++ +  + G LD A  L+ +M  + D   + +++
Sbjct: 413 GRHYFKEMHNEYGVS-PRMEHYAC--MVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLL 469

Query: 116 SGYMVHGFVEKA 127
               VHG V+ A
Sbjct: 470 GSCRVHGNVDLA 481


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 265/469 (56%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++I G ++   ++E  ++ REM     + PD  T+ +VL    + +DI  
Sbjct: 447 MLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM-PDTFTLSTVLPIFAECADIKR 505

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH + I++    D+++ ++LI MYA C  +DY+  + D  SD D V           
Sbjct: 506 GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAV----------- 554

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++G  QN   E  L + R M  +GVRP  VT SS+
Sbjct: 555 --------------------LWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSL 594

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F + S L+ GK++H Y ++ R++ NI++++++ID Y K G +  A+RVF+  +   +
Sbjct: 595 IPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDI 654

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  YA HG  ++A  LF  M    ++P+ +TF AVL+AC+H+GLVD  W  FN+
Sbjct: 655 VSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNS 714

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS QYG  PS+EH A +   L RA  + EA  F+S+M +KP++ VW  LL    +  +  
Sbjct: 715 MSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTV 774

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   +FE+EP++ G+++I++N+YS +GRW+EA ++R+ M+  G+ K P  SWIE  
Sbjct: 775 LAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVK 834

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             L  F+A D S    ++I   L      M  +GYV     +L ++EEE
Sbjct: 835 NKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEE 883


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 267/478 (55%), Gaps = 11/478 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+++ +V+WN+MI+GY   GF+ E   +FR+M    + + D  T  SVL AC  +   + 
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGI-QWDEFTYTSVLSACANAGFFLH 309

Query: 61  GMEVHNFVIESH----IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G +VH +++ +     +   L + NAL  +Y KCG +D AR + ++M  KD VS++AI+S
Sbjct: 310 GKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILS 369

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G +++A   F+ M    L TW  +ISGL QN   E  L L   M++ G  P    
Sbjct: 370 GYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYA 429

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +      +  + L  G+++H   V+  +D ++    A+I  YAK G +  A  +F    
Sbjct: 430 FAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMP 489

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
               + W A+I+A   HG  ++A+ LF  ML   I PD +TF  VLS C+H+GLV++   
Sbjct: 490 YLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHR 549

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F +MSG YGI P  +HYA M+ +L RA + SEA + +  MPV+P   +W ALL G  I 
Sbjct: 550 YFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIH 609

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+++LG    + LFE+ P++ G Y++++N+Y+  GRWD+  +VR+ M++ G+ K PG SW
Sbjct: 610 GNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSW 669

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAYV 468
           IE    +  F+  D    + + +Y  LE L   MR+ GY      VL D   E+  YV
Sbjct: 670 IEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYV 727



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 20/320 (6%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGM 62
           RD V +N+MI GYS          LFR++L +   RPD  T  SVL A      D     
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNG-FRPDNFTFTSVLGALALIVEDEKQCQ 170

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGS---------LDYARALLDEMSDKDEVSYSA 113
           ++H  V++S       + NAL+ ++ KC S         +  AR L DEM+++DE+S++ 
Sbjct: 171 QIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTT 230

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I+GY+ +G ++ A      M    +  WNA+ISG V +      L++ R+M   G++ +
Sbjct: 231 MIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWD 290

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRNIYVATAIIDTYAKTGFLHGAQ 229
             T +S+ S  ++      GK++H Y ++       D ++ V  A+   Y K G +  A+
Sbjct: 291 EFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEAR 350

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           +VF++   + L+ W AI+S Y   G   +A S F EM    +    +T+T ++S  A +G
Sbjct: 351 QVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL----LTWTVMISGLAQNG 406

Query: 290 LVDKAWDIFNAMSGQYGIQP 309
             +++  +FN M  + G +P
Sbjct: 407 FGEESLKLFNRMKSE-GFEP 425



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 186/428 (43%), Gaps = 56/428 (13%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM--EVHNFVIESHIKMDLWICNALIGMYA 88
           +M N+  +R       + LQ C   + + + +   VH  +I S  K   +I N LI +Y 
Sbjct: 2   DMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYC 61

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST--WNAVI 146
           K   L  A  L DE+   D V+ + +I+ +   G    A ++F         T  +NA+I
Sbjct: 62  KSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMI 121

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF-SNLKGGKEIHGYAVKN-- 203
           +G   NN     ++L R++  +G RP+  T +S+    +    + K  ++IH   VK+  
Sbjct: 122 TGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGS 181

Query: 204 --------------------------------------RYDRNIYVATAIIDTYAKTGFL 225
                                                   +R+    T +I  Y + G L
Sbjct: 182 GFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGEL 241

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++  D    + ++ W A+IS Y  HG   +A+ +F +M   GIQ D  T+T+VLSAC
Sbjct: 242 DAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSAC 301

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS----RARRISEATEFVSKMPVKP 341
           A++G       + +A   +   +PS++    +   L+    +  ++ EA +  ++MPVK 
Sbjct: 302 ANAGFFLHGKQV-HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKD 360

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVR 400
               W A+L G   +G ++  K      FE  PE N   + +M +  +Q G  +E+ ++ 
Sbjct: 361 LVS-WNAILSGYVNAGRIDEAK----SFFEEMPERNLLTWTVMISGLAQNGFGEESLKLF 415

Query: 401 EQMKESGL 408
            +MK  G 
Sbjct: 416 NRMKSEGF 423


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 261/444 (58%), Gaps = 1/444 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           RD+VSWN++I GY + G   E   LF  M+    V+RPD VT+++ +  CGQ  D+  G 
Sbjct: 189 RDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGR 248

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H FV    +   + + NAL+ MY KCGSL+ A+++ + +  +  VS++ +I G+   G
Sbjct: 249 RLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFG 308

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A  +F  M    +  WNA+++G VQ  + +  L L  EMQ + V P+ +T+ ++ +
Sbjct: 309 LMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLT 368

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S    L+ G  +H Y  K+R   ++ + T++ID YAK G +  A  +F     ++ + 
Sbjct: 369 ACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALT 428

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I   A HG A++A+  F  M+  G +PD +TF  VLSAC H+GLV +  + F+ M 
Sbjct: 429 WTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLME 488

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +Y ++  ++HY+CM+ +L RA  + EA + V+ MP++P A VWGA+ +   + G++ LG
Sbjct: 489 TKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLG 548

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     L EI+P ++G Y+++AN+Y++A    +AD+VR  M+  G+ K+PG S IE +G 
Sbjct: 549 EKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGV 608

Query: 423 LQSFVAKDTSGDKSEQIYLILERL 446
           +  F+ KD S   S  IY  L  +
Sbjct: 609 VHEFIVKDKSHMDSHAIYDCLHEI 632



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 191/443 (43%), Gaps = 49/443 (11%)

Query: 20  GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79
           G    C  L+R +L S   RPD +T   +L+AC +  +  +G      V+   +  D+++
Sbjct: 103 GVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFV 162

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM----- 134
            NA     +  G ++ AR L D    +D VS++ +I GY+  G   +A++LF  M     
Sbjct: 163 VNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDA 222

Query: 135 -KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
             RP   T  A +SG  Q    E    L   + + GV      ++++  ++    +L+  
Sbjct: 223 VVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMA 282

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K +     +    R +   T +I  +AK G +  A++VFD    R +  W A+++ Y   
Sbjct: 283 KSV----FERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQC 338

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
               +A+SLF+EM    + PD +T   +L+AC+  G ++    +   +  ++ +  SV  
Sbjct: 339 KQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIE-KHRLVFSVAL 397

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD-----------VELG 362
              ++ + ++   I +A     ++P K +A  W A++ G +  G            +ELG
Sbjct: 398 GTSLIDMYAKCGNIEKAIHIFKEIPEK-NALTWTAMICGLANHGHANEAIEHFRTMIELG 456

Query: 363 K------FV-----CDH------------LFEIE---PENTGNYIIMANLYSQAGRWDEA 396
           +      F+     C H            L E +        +Y  M +L  +AG  DEA
Sbjct: 457 QKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEA 516

Query: 397 DRVREQMKESGLAKIPGRSWIEC 419
           +++   M     A + G  +  C
Sbjct: 517 EQLVNTMPMEPDAVVWGAIFFAC 539



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 34/259 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+  WN+++ GY Q    +E  +LF EM  + V+ PD +T+V++L AC Q   +  
Sbjct: 320 MPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVV-PDEITMVNLLTACSQLGALEM 378

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH ++ +  +   + +  +LI MYAKCG+++ A  +  E+ +K+ ++++A+I G   
Sbjct: 379 GMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLAN 438

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A++ F                               R M   G +P+ +T   +
Sbjct: 439 HGHANEAIEHF-------------------------------RTMIELGQKPDEITFIGV 467

Query: 181 FSLFSHFSNLKGGKEIHGYA-VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S   H   +K G+E       K   +R +   + +ID   + G L  A+++ +      
Sbjct: 468 LSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEP 527

Query: 240 -LIIWTAIISAYAAHGDAS 257
             ++W AI  A    G+ S
Sbjct: 528 DAVVWGAIFFACRMQGNIS 546


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 267/470 (56%), Gaps = 11/470 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++++WN +++G ++ G   +       M     L PD   V   L A G   D+  G ++
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFL-PDATGVSCALSAVGDVGDVAVGEQL 178

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +V+++  ++D  +  ALI MY KCG  D    + DE S  D  S +A+++G   +  V
Sbjct: 179 HGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV 238

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            +A+ LF+     G+     +W ++++  VQN R    +DL REMQ+ G+ PN+VTI  +
Sbjct: 239 SEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCV 298

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F++ + L  G+  H ++++  +  +IYV +A++D YAK G +  A+ +F+    R++
Sbjct: 299 LPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNV 358

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  YA HG+A  AV LF  M ++  +PD VTFT VL AC+ +G  ++    FN 
Sbjct: 359 VSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNE 418

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI P +EHYACMV +L RA ++ +A + +++MP +P   +WG+LL    + G+V 
Sbjct: 419 MQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVV 478

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   ++LF++EPEN GNY++++N+Y+    WD  +R+R+ MK  GL K  G SWIE  
Sbjct: 479 LAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIK 538

Query: 421 GGLQSFVAKDTSGDKSEQI-----YLILE-RLLGLMREEGYVLLDEVEEE 464
             +   +A D+S      I     +L +E R LG      YVL D  E+E
Sbjct: 539 NKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQE 588



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 196/444 (44%), Gaps = 55/444 (12%)

Query: 73  IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQ 132
           +  D ++ ++L+  Y + G+   AR++LD M  +  V +SA+I+ +  HG  E A  L +
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110

Query: 133 VMK----RPGLSTWNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            M+     P + TWN ++SGL ++ R  +AVL LVR M   G  P+A  +S   S     
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR-MHGEGFLPDATGVSCALSAVGDV 169

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            ++  G+++HGY VK     +  VATA+ID Y K G      RVFD      +    A++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           +  + +   S+A+ LF E +  GI+ + V++T++++ C  +G   +A D+F  M  + GI
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GI 288

Query: 308 QPSVEHYAC-----------------------------------MVGVLSRARRISEATE 332
           +P+     C                                   +V + ++  R+ +A  
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARM 348

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAG 391
               MP + +   W A++ G ++ G+ E   +         E  +   +  +    SQAG
Sbjct: 349 IFEAMPYR-NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407

Query: 392 RWDEADR--VREQMKESGLAKIPGRSWIECSGGLQSFVAK-DTSGDKSEQIYL-----IL 443
            W E  R    E   + G++  P      C   L     K D + D   Q+       I 
Sbjct: 408 -WTEEGRSYFNEMQHKHGIS--PRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIW 464

Query: 444 ERLLGLMREEGYVLLDEVEEESAY 467
             LLG  R  G V+L EV  E+ +
Sbjct: 465 GSLLGSCRVHGNVVLAEVAAENLF 488



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 39/234 (16%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREM----------------------------- 32
           S  D+ S N+++AG S+     E   LFRE                              
Sbjct: 218 SHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAV 277

Query: 33  -----LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
                + S  + P+ VT+  VL A    + ++ G   H F +      D+++ +AL+ MY
Sbjct: 278 DLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMY 337

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWN 143
           AKCG +  AR + + M  ++ VS++A+I GY +HG  E A+ LF+ M+    +P L T+ 
Sbjct: 338 AKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFT 397

Query: 144 AVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
            V+    Q    E       EMQ   G+ P     + + +L      L    +I
Sbjct: 398 CVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDI 451



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 11/141 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN+MI GY+  G  E    LFR M +S   +PD VT   VL AC Q+     
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKE-KPDLVTFTCVLGACSQAGWTEE 411

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G    N +   H    +M+ + C  ++ +  + G LD A  ++++M  + D   + +++ 
Sbjct: 412 GRSYFNEMQHKHGISPRMEHYAC--MVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 117 GYMVHGFV----EKAMDLFQV 133
              VHG V      A +LFQ+
Sbjct: 470 SCRVHGNVVLAEVAAENLFQL 490


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 265/447 (59%), Gaps = 1/447 (0%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI GYS     EE   L+  ML   V   +  T   +L+AC   S +    ++H  +
Sbjct: 86  WNTMIRGYSNSKEPEEALLLYHHMLYHSVPH-NAYTFPFLLKACSSMSALEETQQIHAHI 144

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+     +++  N+L+ +Y+K G +  AR L D++  +D VS++++I GY   G +E A 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAY 204

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           ++F  M    + +W ++ISG V   + +  L+L   MQ +G++ + V + S     +   
Sbjct: 205 EIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLG 264

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  GK IH Y  K+  + +  +   +ID YAK G L  A  VF + + + + +WTA+IS
Sbjct: 265 VLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMIS 324

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA HG   +A+  F +M   G++P+ +TFT +L+AC+H+GLV +A  +F +M   +G +
Sbjct: 325 GYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFK 384

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           PS+EHY CMV +L RA  + EA E +  MPVKP+A +WGALL    I G++ELGK +   
Sbjct: 385 PSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKI 444

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           L +++P + G YI +A++++ AG W++A RVR QMKE G++K+PG S I  +G    F+A
Sbjct: 445 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 504

Query: 429 KDTSGDKSEQIYLILERLLGLMREEGY 455
            D S  + ++I  +LE+++  +REEGY
Sbjct: 505 GDESHPQIKEIDHMLEQIVERLREEGY 531



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 79/311 (25%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREM------------------------------ 32
           +RD VSWNSMI GY++ G  E    +F  M                              
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           + +  ++ D V +VS LQAC     +  G  +H ++ +  I++D  +   LI MYAKCG 
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD 300

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           L+ A  +  +M +K    ++A+ISGY +HG   +A++ F                     
Sbjct: 301 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFM-------------------- 340

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK-------EIHGYAVKNRY 205
                      +MQ +GV PN +T + I +  SH   +   K        IHG      +
Sbjct: 341 -----------KMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG------F 383

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFN 264
             +I     ++D   + G L  A+ + +    + +  IW A+++A   HG+    + L  
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN----LELGK 439

Query: 265 EMLNNGIQPDP 275
           ++    IQ DP
Sbjct: 440 QIGKILIQVDP 450



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 151/361 (41%), Gaps = 44/361 (12%)

Query: 84  IGMYAKCGSLDYARALLDEMSDK----DEVSYSAIIS--GYMVHGFVEKAMDLFQVMKRP 137
           + +  +C +++  R +  +M       DE+  S +++       G +  A  +F  + RP
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
               WN +I G   +   E  L L   M    V  NA T   +    S  S L+  ++IH
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR----------------------- 234
            + +K  +   IY   ++++ Y+K+G +  A+ +FD+                       
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 235 --------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
                      R++I WT++IS     G   +A++LF+ M   GI+ D V   + L ACA
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 287 HSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
             G++D+  W   +A   ++ I+        ++ + ++   + EA E   KM  K    V
Sbjct: 262 DLGVLDQGKW--IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEK-GVSV 318

Query: 346 WGALLYGASISGDVE--LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           W A++ G +I G     L  F+      +EP N   +  +    S AG   EA  + E M
Sbjct: 319 WTAMISGYAIHGRGREALEWFMKMQTAGVEP-NQMTFTGILTACSHAGLVHEAKLLFESM 377

Query: 404 K 404
           +
Sbjct: 378 E 378


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 283/506 (55%), Gaps = 43/506 (8%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            + K+++V +N MI  Y     Y +   +F+ M    +  PD  T   VL+A   S D+  
Sbjct: 1086 IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGI-DPDHYTYPCVLKASSGSEDLWV 1144

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            GM++H  V+   + +++++ N LI MY KCG L  A  +LDZM  +D VS++++++G   
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCAR 1204

Query: 121  HGFVEKAMDLFQVMKRPGLS-------------------------------------TWN 143
            +G  + A+++ + M+  GL                                      +WN
Sbjct: 1205 NGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWN 1264

Query: 144  AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
             +I+  + N+     +D+  +M+   V P+A++I+S+       S L  G+ IH Y V+ 
Sbjct: 1265 VMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK 1324

Query: 204  RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            R   N+ +  A+ID YAK G L  A+ VFD+ K R ++ WT++ISAY  +G    AVSLF
Sbjct: 1325 RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLF 1384

Query: 264  NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            + M + G+ PD + F +VLSAC+H+GL+D+    F  M+ +  I P +EH+ CMV +L R
Sbjct: 1385 SRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGR 1444

Query: 324  ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
            A ++ EA  F+ +MP++P+ +VWGALL    +  ++ +G    D LF++ PE +G Y+++
Sbjct: 1445 AGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLL 1504

Query: 384  ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
            +N+Y++AGRW++   VR  MK  G+ K+PG S  E    + +F+A D S  +S+QIY  L
Sbjct: 1505 SNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEEL 1564

Query: 444  ERLLGLMREEGYV-----LLDEVEEE 464
            + L+G M+E GYV      L +VEEE
Sbjct: 1565 DVLVGKMKEAGYVPETDSALHDVEEE 1590



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 51/373 (13%)

Query: 45   VVSVLQACGQ----SSDIVFGMEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARAL 99
            VV     CGQ    + DI +  ++H+ + I+  +  +  +   L+  YA CG     R +
Sbjct: 1023 VVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHI 1082

Query: 100  LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
             DE+  K+ V ++ +I  Y                               V N+ +   L
Sbjct: 1083 FDEIPKKNVVFFNVMIRSY-------------------------------VNNHLYSDAL 1111

Query: 160  DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
             + + M   G+ P+  T   +    S   +L  G +IH   V+   D N++V   +I  Y
Sbjct: 1112 LVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMY 1171

Query: 220  AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
             K G L  A RV D    R ++ W ++++  A +G    A+ +  EM   G++PD  T  
Sbjct: 1172 GKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMA 1231

Query: 280  AVLSACAHSGLVDKAW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            ++L A  ++ L + ++  ++F  ++ +     S+  +  M+ V       +EA +   +M
Sbjct: 1232 SLLPAVTNTCLDNVSFVKEMFMKLANK-----SLVSWNVMIAVYMNNSMPAEAVDIFLQM 1286

Query: 338  ---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAG 391
                V P A    ++L        + LG+ +  H + +      N ++   + ++Y++ G
Sbjct: 1287 EDHAVDPDAISIASVLPACGDLSALLLGRRI--HEYVVRKRLQPNLLLENALIDMYAKCG 1344

Query: 392  RWDEADRVREQMK 404
              + A  V +QMK
Sbjct: 1345 CLEYAREVFDQMK 1357


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 280/476 (58%), Gaps = 11/476 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R+IVSWNS+I  Y Q G   +   +F  M+++ V  PD +T+ SV+ AC   S I  
Sbjct: 212 MAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGV-EPDEITLASVVSACASWSAIRE 270

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G+++H  V++    + DL + NAL+ MYAKC  ++ AR + D M  ++ VS ++++ GY 
Sbjct: 271 GLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYA 330

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V+ A  +F  M    + +WNA+I+G  QN  +E  + L   ++   + P   T  +
Sbjct: 331 RAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +  ++ ++LK G++ H   +K+ +      + +I+V  ++ID Y K G +     VF+
Sbjct: 391 LLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFE 450

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R ++ W A+I  YA +G  + A+ +F +ML +G +PD VT   VLSAC+H+GLV++
Sbjct: 451 RMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEE 510

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F++M  + G+ P  +H+ CMV +L RA  + EA + +  MP++P   VWG+LL   
Sbjct: 511 GRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAAC 570

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++ELGK+V + L EI+P N+G Y++++N+Y++ GRW +  RVR+QM++ G+ K PG
Sbjct: 571 KVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPG 630

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL---DEVEEESA 466
            SWIE    +  F+ KD      + I+L+L+ L   M+  GYV     DE+ EE +
Sbjct: 631 CSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEADDDEICEEES 686



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 189/359 (52%), Gaps = 4/359 (1%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D      +L +C +S   +    +H  +I++    +++I N L+  Y KCG  + AR + 
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D M  ++  SY+A++S     G +++A ++F+ M  P   +WNA++SG  Q++R E  L 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
              +M +     N  +  S  S  +  ++L  G +IH    K+RY  ++Y+ +A++D Y+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K G +  AQR FD    R+++ W ++I+ Y  +G A KA+ +F  M++NG++PD +T  +
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           V+SACA    + +   I   +  +   +  +     +V + ++ RR++EA     +MP++
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
                  +++ G + +  V+  + +  ++ E   +N  ++  +   Y+Q G  +EA R+
Sbjct: 318 NVVSE-TSMVCGYARAASVKAARLMFSNMME---KNVVSWNALIAGYTQNGENEEAVRL 372



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 156/319 (48%), Gaps = 64/319 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D  SWN+M++G++Q   +EE    F +M +S     +  +  S L AC   +D+  
Sbjct: 111 MPEPDQCSWNAMVSGFAQHDRFEEALRFFVDM-HSEDFVLNEYSFGSALSACAGLTDLNM 169

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  + +S   +D+++ +AL+ MY+KCG +  A+   D M+ ++ VS++++I+ Y  
Sbjct: 170 GIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQ 229

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   KA+++F VM                              M  +GV P+ +T++S+
Sbjct: 230 NGPAGKALEVF-VM------------------------------MMDNGVEPDEITLASV 258

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            S  + +S ++ G +IH   VK ++Y  ++ +  A++D YAK   ++ A+ VFDR   R 
Sbjct: 259 VSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRN 318

Query: 239 ------------------------------SLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                                         +++ W A+I+ Y  +G+  +AV LF  +  
Sbjct: 319 VVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKR 378

Query: 269 NGIQPDPVTFTAVLSACAH 287
             I P   TF  +L+ACA+
Sbjct: 379 ESIWPTHYTFGNLLNACAN 397


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 275/469 (58%), Gaps = 6/469 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+V+WN+MI  Y + G  +E   LF EM +S V+ PD + + +++ ACG++ ++ +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRY 230

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              ++ F+IE+ ++MD  +  AL+ MYA  G +D AR    +MS ++    +A++SGY  
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++ A  +F   ++  L  W  +IS  V+++  +  L +  EM  SG++P+ V++ S+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++   L   K +H     N  +  + +  A+I+ YAK G L   + VF++   R++
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+++I+A + HG+AS A+SLF  M    ++P+ VTF  VL  C+HSGLV++   IF +
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 470

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+ +Y I P +EHY CMV +  RA  + EA E +  MPV  +  +WG+L+    I G++E
Sbjct: 471 MTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELE 530

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGKF    + E+EP++ G  ++M+N+Y++  RW++   +R  M+E  + K  G S I+ +
Sbjct: 531 LGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQN 590

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G    F+  D    +S +IY  L+ ++  ++  GYV     +L +VEEE
Sbjct: 591 GKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEE 639



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 201/408 (49%), Gaps = 51/408 (12%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           R D  + + +L+A  + S +  GME+H    +     D ++    + MYA CG ++YAR 
Sbjct: 108 RLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARN 167

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ------N 152
           + DEMS +D V+++ +I  Y   G V++A  LF+ MK   +     ++  +V       N
Sbjct: 168 VFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN 227

Query: 153 NRH-EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
            R+  A+ + + E   + VR +   ++++ ++++    +   +E      +    RN++V
Sbjct: 228 MRYNRAIYEFLIE---NDVRMDTHLLTALVTMYAGAGCMDMAREF----FRKMSVRNLFV 280

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
           +TA++  Y+K G L  AQ +FD+ + + L+ WT +ISAY       +A+ +F EM  +GI
Sbjct: 281 STAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGI 340

Query: 272 QPDPVTFTAVLSACAHSGLVDKA-W--------------DIFNAMSGQYG---------- 306
           +PD V+  +V+SACA+ G++DKA W               I NA+   Y           
Sbjct: 341 KPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRD 400

Query: 307 -----IQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
                 + +V  ++ M+  LS     S+A    ++M    V+P+   +  +LYG S SG 
Sbjct: 401 VFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL 460

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           VE GK +   +   + I P+   +Y  M +L+ +A    EA  V E M
Sbjct: 461 VEEGKKIFASMTDEYNITPK-LEHYGCMVDLFGRANLLREALEVIESM 507



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 127 AMDLFQVMKRPGLS-TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           A+++F  +  P  S  +N  +  L +++   A +   + ++  G R +  +   I    S
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             S L  G E+HG A K     + +V T  +D YA  G ++ A+ VFD    R ++ W  
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  Y   G   +A  LF EM ++ + PD +    ++SAC  +G +     I+  +  + 
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI-EN 241

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            ++        +V + + A  +  A EF  KM V+ +  V  A++ G S  G ++  + +
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-NLFVSTAMVSGYSKCGRLDDAQVI 300

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            D   + E ++   +  M + Y ++    EA RV E+M  SG+
Sbjct: 301 FD---QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGI 340


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/469 (37%), Positives = 261/469 (55%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++K++ V W++MI GY       +  AL+ +ML    L P   T+ ++L+AC Q +D+  
Sbjct: 271 VNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKR 330

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +I+S + +D  + N+LI MYAKCG +D A   LDEM  KD VSYSAII     
Sbjct: 331 GKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAII----- 385

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                     SG VQN   E  L + R+MQ+SG+ P   T+ ++
Sbjct: 386 --------------------------SGCVQNGYAEKALLIFRQMQSSGIAPYLETMIAL 419

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G   HGY V   +  +  +  AIID Y+K G +  ++ +FDR + R +
Sbjct: 420 LPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDI 479

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  +I  Y  HG   +A+SLF E+   G++PD VT  AVLSAC+HSGLV +    F++
Sbjct: 480 ISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSS 539

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + I+P + HY CMV +L+RA  + EA  F+ +MP  P+ ++WGALL       ++E
Sbjct: 540 MSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIE 599

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V   +  + PE TGN+++M+N+YS  GRWD+A  +R   +  G  K PG SW+E S
Sbjct: 600 MGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEIS 659

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           G +  F+    S  +S  I   L+ LL  M++ GY      +L +VEEE
Sbjct: 660 GVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEE 708



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 165/363 (45%), Gaps = 38/363 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K  +V WN MI  Y+  G +++   L+  ML   V  P   T   +L+AC     +  
Sbjct: 67  IPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV-TPTNFTFPFLLKACSSLQALQL 125

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H       + MDL++  AL+ MYAKCG L  A+ L + +S +D             
Sbjct: 126 GRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR------------ 173

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             +  WNA+I+    +  H   +  V +MQ +GV PN+ T+ SI
Sbjct: 174 -----------------DIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSI 216

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  + L  GK IH Y ++N +  N+ + TA++D YAK   L  A+++F+    ++ 
Sbjct: 217 LPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKND 276

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + W+A+I  Y  H   S A++L+++ML   G+ P P T   +L ACA    + +   +  
Sbjct: 277 VCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHC 336

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M  + G+         ++ + ++   +  A  F+ +M  K +        Y A ISG V
Sbjct: 337 HMI-KSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVS------YSAIISGCV 389

Query: 360 ELG 362
           + G
Sbjct: 390 QNG 392



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 195/436 (44%), Gaps = 68/436 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RDIV+WN+MIA +S    + +      +M  + V  P+  T+VS+L   GQ++ +  G  
Sbjct: 173 RDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGV-TPNSSTLVSILPTIGQANALHQGKA 231

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H + I +    ++ +  AL+ MYAKC  L YAR + + ++ K++V +SA+I GY++H  
Sbjct: 232 IHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDS 291

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +  A+ L+  M                              +   G+ P   T++++   
Sbjct: 292 ISDALALYDDM------------------------------LCIYGLNPTPATLATMLRA 321

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  ++LK GK++H + +K+  D +  V  ++I  YAK G +  A    D    +  + +
Sbjct: 322 CAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSY 381

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVDKAWDIF 298
           +AIIS    +G A KA+ +F +M ++GI P   T  A+L AC+H      G     + + 
Sbjct: 382 SAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVV 441

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------SEATEF 333
              +    I  ++       G ++ +R I                          EA   
Sbjct: 442 RGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSL 501

Query: 334 VSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLY 387
             ++    +KP      A+L   S SG V  GK+    +   F I+P    +YI M +L 
Sbjct: 502 FQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPR-MAHYICMVDLL 560

Query: 388 SQAGRWDEADRVREQM 403
           ++AG  DEA    ++M
Sbjct: 561 ARAGNLDEAYTFIQRM 576



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 26/328 (7%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A  +F  + +P +  WN +I     +   +  + L   M   GV P   T   +   
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--KGRSLI 241
            S    L+ G+ IH +A       ++YV+TA++  YAK G L+ AQ +F+    + R ++
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVDKAWD 296
            W A+I+A++ H   ++ +    +M   G+ P+  T  ++L         H G    A+ 
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           I N       +Q ++        +L  AR+I        K  V  SA + G +L+  SIS
Sbjct: 237 IRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVN--KKNDVCWSAMIGGYVLHD-SIS 293

Query: 357 GDVEL-GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG--LAKIPG 413
             + L    +C +     P        M    +Q        ++   M +SG  L    G
Sbjct: 294 DALALYDDMLCIYGLNPTPATLAT---MLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350

Query: 414 RSWI----ECS------GGLQSFVAKDT 431
            S I    +C       G L   +AKDT
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEMIAKDT 378


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 173/468 (36%), Positives = 267/468 (57%), Gaps = 17/468 (3%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           + M+A Y+  G  +   ++F  +        D  T   VL++  +   +  G  VH  ++
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGI-------GDYFTFPFVLKSSVELLSVWMGKCVHGLIL 161

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
              ++ DL++  +LI +Y KCG ++ A  + D M+ +D  S++A+++GY   G ++ A+ 
Sbjct: 162 RIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALA 221

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVRPNAVTISSIFSLFSHF 187
           +F+ M    + +W  +ISG  Q+   +  L L  EM  + SGVRPN VTI S+    +  
Sbjct: 222 IFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQL 281

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTA 245
           S L+ G++IH  A +   + N  V  A+   YAK G L  A+  FD+     ++LI W  
Sbjct: 282 STLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNT 341

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I+AYA++G   +AVS F EM+  GIQPD +TFT +LS C+HSGLVD     FN MS  Y
Sbjct: 342 MITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTY 401

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            I P VEHYAC+  +L RA R++EA++ V +MP+     +WG+LL       ++E+ +  
Sbjct: 402 SINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETA 461

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
              LF +EPENTGNY++++N+Y++AGRW E D++R  +K  G  K PG SWIE +G    
Sbjct: 462 ARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHM 521

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEG------YVLLDEVEEESAY 467
           F+  DTS  + ++IY+ LE L   M+  G      YVL D  EEE  +
Sbjct: 522 FLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEF 569



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 3/164 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M  R+IVSW +MI+GYSQ G  ++  +LF EM+     +RP+ VT++SVL AC Q S + 
Sbjct: 226 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 285

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISG 117
            G ++H       +  +  +  AL  MYAKCGSL  AR   D++  ++K+ ++++ +I+ 
Sbjct: 286 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 345

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           Y  +G   +A+  F+ M + G+   +   +GL+    H  ++D+
Sbjct: 346 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDV 389


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 269/463 (58%), Gaps = 8/463 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSWN +I  Y Q G   E    F  M      +PD VT+ SV+ AC   +    
Sbjct: 217 MEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELG-FKPDEVTLASVVSACATLAAFKE 275

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G+++H  V++S   + DL + NAL+ MYAKCG ++ AR + D M  ++ VS + ++SGY 
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYA 335

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V+ A  +F  +K+  + +WNA+I+G  QN  +E  L L R ++   V P   T  +
Sbjct: 336 KSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGN 395

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +  ++ ++L+ G++ H + VK+ +      + +I+V  ++ID Y K G +    RVF+
Sbjct: 396 LLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFE 455

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               +  + W  +I  YA +G   +A+ LF +ML +G +PD VT    L AC+H+GLV++
Sbjct: 456 NMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEE 515

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F +M+ ++G+ P  +HY CMV +L RA  + EA + +  MP +P A VW +LL   
Sbjct: 516 GRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSAC 575

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  ++ LGK+V + +FEI+P ++G Y+++AN+YS+ GRW +A  VR+ M+  G+ K PG
Sbjct: 576 KVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPG 635

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            SWI+    +  F+ KD    + ++IY IL+ L   MR+ GYV
Sbjct: 636 CSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYV 678



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 151/277 (54%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  +I++    +++I N LI +Y KCG LDYAR + D MS+++  S+++IIS  M  GF
Sbjct: 46  VHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGF 105

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+++  LF +M      +WN++I+G  Q++R E  LD    M       N  +  S  S 
Sbjct: 106 VDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSA 165

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +LK G +IHG   K++Y  ++++ + +ID Y+K G +  A+RVFD  + ++++ W
Sbjct: 166 CSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSW 225

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +I+ Y  +G A +A+  F  M   G +PD VT  +V+SACA      +   I   +  
Sbjct: 226 NCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVK 285

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
               +  +     +V + ++  R++EA     +MPV+
Sbjct: 286 SDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 186/415 (44%), Gaps = 81/415 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D  SWNSMIAG++Q   +EE    F  M     +  D  +  S L AC +  D+  
Sbjct: 116 MPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLND-YSFGSGLSACSRLKDLKL 174

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S   +D+++ + LI  Y+KCG +  AR + D M +K+ VS++ +I+ Y  
Sbjct: 175 GAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQ 234

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++ F                                 M   G +P+ VT++S+
Sbjct: 235 NGPAIEALEAFG-------------------------------RMTELGFKPDEVTLASV 263

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +  +  K G +IH   VK +++  ++ +  A++D YAK G ++ A+ VFDR   R+
Sbjct: 264 VSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRN 323

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            +  T ++S YA       A S+F  +     Q D V++ A+++    +G  ++A  +F 
Sbjct: 324 AVSETTMVSGYAKSASVKAARSMFATIK----QKDIVSWNALIAGYTQNGENEEALGLF- 378

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
                                             + +  V P+   +G LL  ++   D+
Sbjct: 379 --------------------------------RMLKRESVCPTHYTFGNLLNASANLADL 406

Query: 360 ELGK----FVCDHLFEI----EPE-NTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           ELG+     V  H F      EP+   GN +I  ++Y + G  +E  RV E M E
Sbjct: 407 ELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLI--DMYMKCGSVEEGLRVFENMVE 459


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 165/440 (37%), Positives = 254/440 (57%), Gaps = 2/440 (0%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S +D+V+W +MI GY+     EE   +F  ML S V  P+ VT+++V+ AC    ++  G
Sbjct: 319 SDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHV-EPNEVTLIAVVSACSDMGNLEMG 377

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             VH  V E +++  L + NAL+ MY KC  L  AR L D M+ KD  S++++++GY   
Sbjct: 378 KRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKC 437

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +E A   F    R     W+A+I+G  QNN+ +  L L  EM   GV P   T+ S+ 
Sbjct: 438 GDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVL 497

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           S     + L  G  IH Y V  +    ++ +  AI+D YAK G +  A  VF     R+L
Sbjct: 498 SACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNL 557

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  +I+ YAA+G A +A+++F++M N G +P+ +TF ++L+AC+H GL+ +  + F+ 
Sbjct: 558 ISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDN 617

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YGI+P   HYACMV +L R   + EA + ++ MP++P    WGALL    + G+VE
Sbjct: 618 MERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVE 677

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +    +L  ++PE++G Y+++AN  +   +W +  RVR  MK+ G+ KIPG S IE  
Sbjct: 678 LARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEID 737

Query: 421 GGLQSFVAKDTSGDKSEQIY 440
           GG   F+  D S  +SE+IY
Sbjct: 738 GGFVEFLVADESHPQSEEIY 757



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 175/378 (46%), Gaps = 20/378 (5%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI GY          + F  M    V   D  + V  L+AC Q   +  G  V+  V
Sbjct: 225 WNTMIRGYQNARKPIFAFSFFVYMFQLRV-EMDSRSFVFALKACQQFETVFEGESVYCVV 283

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +     +L + N LI  YA+ G L  AR + DE SDKD V+++ +I GY  H   E+AM
Sbjct: 284 WKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAM 343

Query: 129 DLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++F++M      P   T  AV+S        E    +  +++   +R +    +++  ++
Sbjct: 344 EVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMY 403

Query: 185 SHFSNLKGGKEIHGYAVKNRYDR----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                L   +E+        +DR    ++Y  T++++ YAK G L  A+R FD+   ++ 
Sbjct: 404 VKCDCLVDAREL--------FDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNA 455

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I+ Y+ +    +++ LF+EM+  G+ P   T  +VLSAC     ++    I   
Sbjct: 456 VCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQY 515

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
                 I  SV     +V + ++   I  ATE  S MP + +   W  ++ G + +G  +
Sbjct: 516 FVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPER-NLISWNTMIAGYAANGRAK 574

Query: 361 LGKFVCDHLFEI--EPEN 376
               V D +  +  EP N
Sbjct: 575 QAINVFDQMRNMGFEPNN 592



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 144/336 (42%), Gaps = 85/336 (25%)

Query: 1   MSKRDIVSWNS-------------------------------MIAGYSQGGFYEECKALF 29
           M+ +D+ SW S                               MIAGYSQ    +E   LF
Sbjct: 419 MATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLF 478

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN-FVIESHIKMDLWICNALIGMYA 88
            EM+   V+ P   T+VSVL ACGQ + +  G  +H  FV+   I + + + NA++ MYA
Sbjct: 479 HEMMERGVV-PIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYA 537

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCGS+D A  +   M +++ +S++ +I+GY  +G  ++A+++F                 
Sbjct: 538 KCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFD---------------- 581

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI-----HGYAVKN 203
                          +M+  G  PN +T  S+ +  SH   +  G+E        Y +K 
Sbjct: 582 ---------------QMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKP 626

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-IIWTAIISAYAAHGDASKAVSL 262
             +R  Y    ++D   +TG L  A ++      +     W A+++A   HG+    V L
Sbjct: 627 --ERGHY--ACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGN----VEL 678

Query: 263 FNEMLNNGIQPDPV---TFTAVLSACAHSGLVDKAW 295
                +N ++ DP     +  + + CA+    D+ W
Sbjct: 679 ARLSAHNLLRLDPEDSGIYVLLANTCAN----DRKW 710



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 11/293 (3%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  A  +F  +++P    WN +I G  QN R + +      +    +R    + S +F
Sbjct: 205 GDLHYAHTIFNRVEQPNTFMWNTMIRG-YQNAR-KPIFAFSFFVYMFQLRVEMDSRSFVF 262

Query: 182 SL--FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +L     F  +  G+ ++    K  +D  + V   +I  YA+ G L  A++VFD    + 
Sbjct: 263 ALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ WT +I  YAAH  + +A+ +F  ML + ++P+ VT  AV+SAC+  G ++    +  
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHE 382

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +  +  ++ S+  +  ++ +  +   + +A E   +M  K     W +++ G +  GD+
Sbjct: 383 KVE-EKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATK-DVYSWTSMVNGYAKCGDL 440

Query: 360 ELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
           E  +      F+  P +N   +  M   YSQ  +  E+ ++  +M E G+  I
Sbjct: 441 ESAR----RFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPI 489



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 15/196 (7%)

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           A +G LH A  +F+R +  +  +W  +I  Y        A S F  M    ++ D  +F 
Sbjct: 202 AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFV 261

Query: 280 AVLSACAHSGLVDKAWDIFNAM-----SGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
             L AC     V +   ++  +       +  ++  + H+    G+L  AR++ + +   
Sbjct: 262 FALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESS-- 319

Query: 335 SKMPVKPSAKVWGALL--YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                      W  ++  Y A    +  +  F    L  +EP N    I + +  S  G 
Sbjct: 320 -----DKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEP-NEVTLIAVVSACSDMGN 373

Query: 393 WDEADRVREQMKESGL 408
            +   RV E+++E  +
Sbjct: 374 LEMGKRVHEKVEEKNM 389


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 257/455 (56%), Gaps = 32/455 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S  D V   +MI+GY   G  +E    FR ++    ++P  VT  S+  A    + +  G
Sbjct: 322 SSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER-MKPTSVTFSSIFPAFAGLAALNLG 380

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H  +I++ +     + +A++ MYAKCG LD A  + + +++KD +            
Sbjct: 381 KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAI------------ 428

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WN++I+   QN R    ++L R+M   G R + V+IS   
Sbjct: 429 -------------------CWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGAL 469

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  ++   L  GKEIHG  +K     ++Y  +++ID YAK G L+ ++RVFDR + R+ +
Sbjct: 470 SACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEV 529

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W +IISAY  HGD  + ++LF+EML NGIQPD VTF  ++SAC H+G VD+    ++ M
Sbjct: 530 SWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLM 589

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + +YGI   +EHYAC+  +  RA R+ EA E ++ MP  P A VWG LL    I G+VEL
Sbjct: 590 TEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVEL 649

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    HLF+++P N+G Y+++AN+ + AG+W +  +VR  MKE G+ K+PG SWIE + 
Sbjct: 650 AEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNN 709

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               FVA D S   + QIY +L+ LL  +++EGYV
Sbjct: 710 ATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 209/424 (49%), Gaps = 59/424 (13%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + D+VSWN +I+GY Q G   E + LFR M+++ + +PD +T  S L    +   +    
Sbjct: 222 QSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGI-KPDSITFASFLPCVNELLSLKHCK 280

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H ++I   + +D+++ +ALI +Y KC  ++ A+ +L + S  D V  + +ISGY+++G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             ++A+                           EA   LV+E     ++P +VT SSIF 
Sbjct: 341 KNKEAL---------------------------EAFRWLVQER----MKPTSVTFSSIFP 369

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            F+  + L  GKE+HG  +K + D   +V +AI+D YAK G L  A RVF+R   +  I 
Sbjct: 370 AFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC 429

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM- 301
           W ++I++ + +G   +A++LF +M   G + D V+ +  LSACA+   +    +I   M 
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489

Query: 302 -----SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
                S  Y     ++ YA   G L+ +RR+ +  +  +++        W +++      
Sbjct: 490 KGPLRSDLYAESSLIDMYA-KCGNLNFSRRVFDRMQERNEVS-------WNSIISAYGNH 541

Query: 357 GDVELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
           GD++     C  LF       I+P++   ++ + +    AG+ DE  R    M E     
Sbjct: 542 GDLK----ECLALFHEMLRNGIQPDHV-TFLGIISACGHAGQVDEGIRYYHLMTEE--YG 594

Query: 411 IPGR 414
           IP R
Sbjct: 595 IPAR 598



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D V WN M+ GY + G       +F EM +S + +P+ VT   VL  C   + +  
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEI-KPNSVTFACVLSVCASEAMLDL 177

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   +   +++D  + N L+ MY+KC  L  AR L D     D VS          
Sbjct: 178 GTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVS---------- 227

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +ISG VQN        L R M ++G++P+++T +S 
Sbjct: 228 ---------------------WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASF 266

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +LK  KEIHGY +++    ++++ +A+ID Y K   +  AQ++  +      
Sbjct: 267 LPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDT 326

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           ++ T +IS Y  +G   +A+  F  ++   ++P  VTF+++  A A
Sbjct: 327 VVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFA 372



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 32/275 (11%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN MI G++  G +      + +ML + V  PD  T   V++AC     +  G  VH  
Sbjct: 25  AWNWMIRGFTMMGQFNYALLFYLKMLGAGV-SPDKYTFPYVVKACCGLKSVKMGKIVHET 83

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V    +K D+++ ++LI +YA+ G L  A+ L D +  KD V                  
Sbjct: 84  VNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSV------------------ 125

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WN +++G V+N      + +  EM+ S ++PN+VT + + S+ +  
Sbjct: 126 -------------LWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASE 172

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           + L  G ++HG AV    + +  VA  ++  Y+K   L  A+++FD      L+ W  II
Sbjct: 173 AMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGII 232

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           S Y  +G   +A  LF  M++ GI+PD +TF + L
Sbjct: 233 SGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++++D + WNSMI   SQ G   E   LFR+M      R D V++   L AC     + +
Sbjct: 422 ITEKDAICWNSMITSCSQNGRPGEAINLFRQM-GMEGTRYDCVSISGALSACANLPALHY 480

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  +I+  ++ DL+  ++LI MYAKCG+L+++R + D M +++EVS+++IIS Y  
Sbjct: 481 GKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGN 540

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG +++ + LF  M R G+   +    G++    H   +D
Sbjct: 541 HGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVD 580



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 88/175 (50%)

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y+  G ++ A +LF  ++    S WN +I G     +    L    +M  +GV P+  T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +        ++K GK +H          +++V +++I  YA+ G L  AQ +FD    
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           +  ++W  +++ Y  +GD+  A+ +F EM ++ I+P+ VTF  VLS CA   ++D
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 182/538 (33%), Positives = 280/538 (52%), Gaps = 76/538 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN+MI GYSQ G YEE   LF EM+N    +PD +T+ S+LQACG   D+ F
Sbjct: 336 MVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEF 393

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKC------------------------------ 90
           G  VH+++I S  + D    N LI MYAKC                              
Sbjct: 394 GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQ 453

Query: 91  -GSLDYARALLDEMS---DKDEVSYSAIIS----------GYMVH--------------- 121
            GS D A  L   M      D V+Y  ++S          G  +H               
Sbjct: 454 NGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS 513

Query: 122 ----------GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
                     G +  ++ +F+ MK   + TWN +I+  V +      L ++  M+  GV 
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 573

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T+ SI  + S  +  + GKEIHG   K   + ++ V   +I+ Y+K G L  + +V
Sbjct: 574 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 633

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           F   K + ++ WTA+ISA   +G+  KAV  F EM   GI PD V F A++ AC+HSGLV
Sbjct: 634 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 693

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
           ++  + F+ M   Y I+P +EHYAC+V +LSR+  + +A +F+  MP+KP + +WGALL 
Sbjct: 694 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 753

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
              +SGD E+ + V + + E+ P++TG Y++++N+Y+  G+WD+   +R+ +K  GL K 
Sbjct: 754 ACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKD 813

Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           PG SW+E    +  F       ++ E++  +L  L GLM +EGY+     +L +++E+
Sbjct: 814 PGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDED 871



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 34/289 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+I+GY+  G++ E   ++    N  V+ PD  T+ SVL+ACG    +  
Sbjct: 235 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV-PDSYTMSSVLRACGGLGSVEE 293

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  + +  IK D+ + N L+ MY K   L   R + D+M  +D VS++ +I GY  
Sbjct: 294 GDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQ 353

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+++ LF  M                                 +  +P+ +TI+SI
Sbjct: 354 VGLYEESIKLFMEM--------------------------------VNQFKPDLLTITSI 381

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                H  +L+ GK +H Y + + Y+ +   +  +I+ YAK G L  +Q VF   K +  
Sbjct: 382 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 441

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + W ++I+ Y  +G   +A+ LF +M+   ++PD VT+  +LS     G
Sbjct: 442 VSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLG 489



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 193/437 (44%), Gaps = 74/437 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WNS+I   +  G + E  +L+ E      L+PD  T  SV+ AC    D      +
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSET-QRIRLQPDTYTFPSVINACAGLLDFEMAKSI 196

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V+      DL+I NALI MY +   LD AR + +EM  +D VS++++ISGY  +G+ 
Sbjct: 197 HDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY- 255

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN               L++    +  GV P++ T+SS+    
Sbjct: 256 -----------------WN-------------EALEIYYRFRNLGVVPDSYTMSSVLRAC 285

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               +++ G  IHG   K    +++ V   ++  Y K   L   +R+FD+   R  + W 
Sbjct: 286 GGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN 345

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------------ 292
            +I  Y+  G   +++ LF EM+N   +PD +T T++L AC H G ++            
Sbjct: 346 TMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 404

Query: 293 ------KAWDIFNAMSGQYG-IQPSVEHYA---C--------MVGVLSRARRISEATEFV 334
                  A +I   M  + G +  S E ++   C        M+ V  +     EA +  
Sbjct: 405 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF 464

Query: 335 SKMP--VKPSAKVWGALLYGASISGDVELGKFV-CDHLFEIEPENTGNYIIMAN----LY 387
             M   VKP +  +  LL  ++  GD+ LGK + CD    +      + I+++N    +Y
Sbjct: 465 KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD----LAKMGFNSNIVVSNTLVDMY 520

Query: 388 SQAGRWDEADRVREQMK 404
           ++ G   ++ +V E MK
Sbjct: 521 AKCGEMGDSLKVFENMK 537


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 269/495 (54%), Gaps = 36/495 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM------------------------------LN 34
           ++V+WN++IAGY+Q G  +E K LF++M                              L+
Sbjct: 488 NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELH 547

Query: 35  SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94
                P   +  S L AC    D+  G  +H+  I++  + + ++ N LI MYAKCG+++
Sbjct: 548 RSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 607

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
               +   +  KD VS++++ISG   +  ++ A  +F+ M +  + +W A+IS  VQ   
Sbjct: 608 DGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGH 667

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
            E  LDL  +M A G++PN +T++S+ S   +   +K G++ H    K  +D  ++V  +
Sbjct: 668 GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNS 727

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I  Y K G+  G   VF+      LI W A++   A +G   +A+ +F +M   GI PD
Sbjct: 728 LITMYFKCGYEDGFC-VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPD 786

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            ++F  VL AC+H+GLVD+ W  FN+M+ +YGI P V HY CMV +L RA  +SEA   +
Sbjct: 787 QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI 846

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
             MPVKP + +W ALL    I  +VELG+ V + LF++    +  Y++++NL++  G WD
Sbjct: 847 ENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWD 906

Query: 395 EADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           +   +R+ MK+ GL K PG SWI+    L  FV  D + D+ E+IY  L+   G  R  G
Sbjct: 907 KVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATG 966

Query: 455 YV-----LLDEVEEE 464
           Y+     +L +VEEE
Sbjct: 967 YMPDTNFVLHDVEEE 981



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 171/352 (48%), Gaps = 19/352 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNSMI GYSQ G  +E + LF   +   +      T   +L    +   I  
Sbjct: 197 MIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR-----TWTILLTGYAKEGRIEE 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EV     ES  + ++   NA+I  Y + G L  AR L DEM +K+  S++++++GY  
Sbjct: 252 AREV----FESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCH 307

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              + +A +LF  M      +W  +ISG V  + +    D+  +M  +  RP+      +
Sbjct: 308 CYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVV 367

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L+    +   A+K  Y+ ++ V +AI++ Y + G L  A   F+    R+ 
Sbjct: 368 LSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNE 427

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT +I+A+A  G    A+ L+  +    +     T TA+++A A  G + KA  IF+ 
Sbjct: 428 YSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDE 483

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +     + P+V  +  ++   ++   + EA +   KMPVK SA  W A++ G
Sbjct: 484 I-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMIAG 529



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 174/399 (43%), Gaps = 95/399 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA--------- 51
           M +R+ VSW  MI+GY     Y E   +F +M  + V RPD    V VL A         
Sbjct: 321 MPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRT-VARPDQSIFVVVLSAITGLDDLEL 379

Query: 52  ----------CGQSSDIVFGMEVHN------------FVIESHIKMDLWICNALIGMYAK 89
                      G   D+V G  + N               E+  + + +    +I  +A+
Sbjct: 380 IGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ 439

Query: 90  CGSLD-------------------------------YARALLDEMSDKDEVSYSAIISGY 118
           CG LD                                AR + DE+ + + V+++AII+GY
Sbjct: 440 CGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGY 499

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G +++A DLFQ M     ++W A+I+G VQN      L+L+ E+  SG  P+  + +
Sbjct: 500 TQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFT 559

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG--------------- 223
           S  S  ++  +++ G+ IH  A+K     N YV   +I  YAK G               
Sbjct: 560 SALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK 619

Query: 224 ----------------FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
                            L  A+ VF++   R ++ WTAIISAY   G    A+ LF +ML
Sbjct: 620 DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML 679

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
             GI+P+ +T T++LSAC + G + K  + F+A+  + G
Sbjct: 680 ARGIKPNQLTVTSLLSACGNLGAI-KLGEQFHALIFKLG 717



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 150/334 (44%), Gaps = 46/334 (13%)

Query: 77  LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR 136
           L+ CN  I    + G ++ AR + +EM  +D VS++++I+GY  +G V++A  LF     
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
             + TW  +++G  +  R E      RE+  S    N V+ +++ S +    +LK  +++
Sbjct: 231 KNIRTWTILLTGYAKEGRIEE----AREVFESMTERNVVSWNAMISGYVQNGDLKNARKL 286

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
                    ++N+    +++  Y     +  A+ +FD+   R+ + W  +IS Y    D 
Sbjct: 287 ----FDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDY 342

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            +A  +F +M     +PD   F  VLSA   +GL D                        
Sbjct: 343 WEAWDVFVKMCRTVARPDQSIFVVVLSAI--TGLDDLE---------------------- 378

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE- 375
           ++G L   R I+  T +   + V        A+L   + +G ++L      H FE  PE 
Sbjct: 379 LIGSL---RPIAIKTGYEGDVVVG------SAILNAYTRNGSLDLAM----HFFETMPER 425

Query: 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           N  ++  M   ++Q GR D+A ++ E++ E  +A
Sbjct: 426 NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA 459



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 197 HGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H    KN+     +++     I    + G +  A+RVF+    R ++ W ++I+ Y+ +G
Sbjct: 157 HKSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNG 216

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
              +A  LF+  +   I+    T+T +L+  A  G +++A ++F +M+     + +V  +
Sbjct: 217 KVDEARLLFDAFVGKNIR----TWTILLTGYAKEGRIEEAREVFESMT-----ERNVVSW 267

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374
             M+    +   +  A +   +MP K  A  W +++ G      +   +     LF+  P
Sbjct: 268 NAMISGYVQNGDLKNARKLFDEMPEKNVAS-WNSVVTGYCHCYRMSEAR----ELFDQMP 322

Query: 375 E-NTGNYIIMANLYSQAGRWDEA 396
           E N+ ++++M + Y     + EA
Sbjct: 323 ERNSVSWMVMISGYVHISDYWEA 345


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 258/458 (56%), Gaps = 33/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+VSWNSMIAGY++ G   E   +F EM       PD +++VSVL ACG+  D+  
Sbjct: 177 IPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLEL 236

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E  + ++ +I +ALI MYAKCG L  AR + D M+ +D +           
Sbjct: 237 GRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVI----------- 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNAVISG  QN   +  + L   M+   V  N +T++++
Sbjct: 286 --------------------TWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAV 325

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK+I  YA +  +  +I+VATA+ID YAK G L  AQRVF     ++ 
Sbjct: 326 LSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNE 385

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             W A+ISA A+HG A +A+SLF  M + G   +P+ +TF  +LSAC H+GLV++ + +F
Sbjct: 386 ASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLF 445

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EHY+CMV +L+RA  + EA + + KMP KP     GALL       +
Sbjct: 446 DMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKN 505

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++G+ V   + E++P N+GNYII + +Y+    W+++ R+R  M++ G+ K PG SWIE
Sbjct: 506 VDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIE 565

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               L  F A D     S  +  I++ L   ++ EGYV
Sbjct: 566 VENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYV 603



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 34/304 (11%)

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V +  +  D    ++LI MY++CG + +AR + DE+  +D VS++++I+GY   G  
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCA 198

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+++F  M R                                G  P+ +++ S+    
Sbjct: 199 REAVEVFGEMGR------------------------------RDGFEPDEMSLVSVLGAC 228

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               +L+ G+ + G+ V+     N Y+ +A+I  YAK G L  A+R+FD    R +I W 
Sbjct: 229 GELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWN 288

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+IS YA +G A +A+SLF+ M  + +  + +T TAVLSACA  G +D    I +  + Q
Sbjct: 289 AVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQI-DEYASQ 347

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LG 362
            G Q  +     ++ + ++   ++ A     +MP K  A  W A++   +  G  +  L 
Sbjct: 348 RGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEAS-WNAMISALASHGKAKEALS 406

Query: 363 KFVC 366
            F C
Sbjct: 407 LFQC 410



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 5/215 (2%)

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEV-SYSAIISGYMVH--GFVEKAMDLFQVMKR 136
           C  L+ +  +C S    + +  +M  K  + S +  +    +H   F   ++    +   
Sbjct: 18  CKCLVFLAKQCSSSKTLQQVHAQMVVKSSIHSPNNHLLSKAIHLKNFTYASLLFSHIAPH 77

Query: 137 PGLSTWNAVISGLVQNNRHEAV-LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
           P    +N +I  L     H  + L L   M +  + PN  T    F   ++ + L   + 
Sbjct: 78  PNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARA 137

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
            H    K     + +   ++I  Y++ G +  A++VFD    R L+ W ++I+ YA  G 
Sbjct: 138 AHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGC 197

Query: 256 ASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSG 289
           A +AV +F EM   +G +PD ++  +VL AC   G
Sbjct: 198 AREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELG 232


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 175/469 (37%), Positives = 260/469 (55%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWN+MIAGY+Q G  +E   LF +M  + V  P+  T+VSVL AC QS+ +  
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV-PPNESTIVSVLSACAQSNALDL 279

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  + +++ +  +  +L + NALI MY+KCG L  AR L D+M ++D +           
Sbjct: 280 GNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVI----------- 328

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               +WN +I G      ++  L L REM ASGV P  +T  SI
Sbjct: 329 --------------------SWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSI 368

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   +  GK IH Y  KN    +  ++T++ID YAK G +  A++VFD  K +SL
Sbjct: 369 LPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSL 428

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I   A HG A KA  LF++M ++GI+P+ +TF  +LSAC H+GLVD     F++
Sbjct: 429 ASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSS 488

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P  +HY CM+ +L RA    EA   +  M VKP   +WG+LL      G VE
Sbjct: 489 MVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVE 548

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V + LFE+EP+N G Y++++N+Y+ AG+WD+  R+R ++ + G+ K+PG + IE  
Sbjct: 549 LGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVD 608

Query: 421 GGLQSFVAKDTSGDKSEQIYLILE------RLLGLMREEGYVLLDEVEE 463
             +  F+  D    +SE IY +LE      ++ G + +   VL D  EE
Sbjct: 609 NVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEE 657



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 232/491 (47%), Gaps = 51/491 (10%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WNSMI G S           F  M+ S V  P+  T   +L++C + +    G ++H  V
Sbjct: 97  WNSMIRGLSMSLSPALALVFFVRMIYSGV-EPNSYTFPFLLKSCAKLASAHEGKQIHAHV 155

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     D++I  +LI MYA+ G ++ A+ + D+ + +D +S++A+I+GY + G++++A 
Sbjct: 156 LKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRAR 215

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M    + +WNA+I+G  Q  R +  L L  +M+ + V PN  TI S+ S  +  +
Sbjct: 216 QLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSN 275

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  G  +  +        N+ +  A+ID Y+K G L  A+ +FD    R +I W  +I 
Sbjct: 276 ALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIG 335

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD---------------- 292
            Y       +A++LF EML +G++P  +TF ++L +CAH G +D                
Sbjct: 336 GYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV 395

Query: 293 -------------KAWDIFNAMSGQYGIQ-PSVEHYACMVGVLSRARRISEATEFVSKMP 338
                        K  +I  A     G++  S+  +  M+  L+   +  +A E  SKM 
Sbjct: 396 STSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMS 455

Query: 339 ---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGR 392
              ++P+   +  +L     +G V+LG+     +   ++I P+ + +Y  M +L  +AG 
Sbjct: 456 SDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPK-SQHYGCMIDLLGRAGL 514

Query: 393 WDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           ++EA+ + + M+     K  G  W    G  +          + E   L+ ERL  L  +
Sbjct: 515 FEEAESLLQNME----VKPDGAIWGSLLGACRDH-------GRVELGELVAERLFELEPD 563

Query: 453 E--GYVLLDEV 461
               YVLL  +
Sbjct: 564 NPGAYVLLSNI 574



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  A+ LF  ++ P L  WN++I GL  +      L     M  SGV PN+ T   + 
Sbjct: 77  GDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLL 136

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +  ++   GK+IH + +K  +  ++++ T++I+ YA++G ++ AQ VFD+   R  I
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            +TA+I+ YA  G   +A  LF+EM       D V++ A+++  A  G   +A  +F  M
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEM----PVKDVVSWNAMIAGYAQMGRSKEALLLFEDM 252

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-------VKPSAKVWGALLYGAS 354
             +  + P+    + +V VLS   + S A +  + M        +  + K+  AL+   S
Sbjct: 253 R-KANVPPN---ESTIVSVLSACAQ-SNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYS 307

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             GD++  + + D + E    +  ++ +M   Y+    + EA  +  +M  SG+
Sbjct: 308 KCGDLQTARELFDDMLE---RDVISWNVMIGGYTHMCSYKEALALFREMLASGV 358



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--KTGFLHGAQRVFDRFKGR 238
             L S   +++  K+IH + +K      ++  + +I+  A  ++G +  A  +F+  +  
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L IW ++I   +     + A+  F  M+ +G++P+  TF  +L +CA      +   I 
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI- 151

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A   + G    V  +  ++ + +++  ++ A     +   +  A  + AL+ G ++ G 
Sbjct: 152 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR-DAISFTALIAGYALWGY 210

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++  + + D   E+  ++  ++  M   Y+Q GR  EA  + E M+++ +   P  S I
Sbjct: 211 MDRARQLFD---EMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVP--PNESTI 264


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/509 (33%), Positives = 276/509 (54%), Gaps = 49/509 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+ +WNSMI+ Y   G + E    F ++L    +RPD  T   VL+ACG   D   
Sbjct: 77  IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD--- 133

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +  +   + ++++  +LI MY++ G    AR+L D+M  +D  S++A+ISG + 
Sbjct: 134 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 193

Query: 121 HGFVEKAMDLFQVMKRPGLS---------------------------------------T 141
           +G   +A+D+   M+  G+                                        +
Sbjct: 194 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVIS 253

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           WN +I+G  QN      +++ + M+    + PN  T  SI   ++H   L+ G +IHG  
Sbjct: 254 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV 313

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +K     +++VAT +ID Y K G L  A  +F +    S + W AIIS +  HG A K +
Sbjct: 314 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTL 373

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            LF EML+ G++PD VTF ++LSAC+HSG V++    F  M  +YGI+PS++HY CMV +
Sbjct: 374 KLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDL 432

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L RA  +  A +F+  MP++P A +WGALL    I G++ELGKF  D LFE++ +N G Y
Sbjct: 433 LGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYY 492

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
           ++++N+Y+  G+W+  D+VR   +E GL K PG S IE +  +  F   + S  K ++IY
Sbjct: 493 VLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 552

Query: 441 LILERLLGLMREEGYV-----LLDEVEEE 464
             L  L   M+  GY+     +L +VEE+
Sbjct: 553 EELRVLTAKMKSLGYIPDYSFVLQDVEED 581



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 114/248 (45%), Gaps = 37/248 (14%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S+   F   +H  ++ +     ++I   L+ +YA  G +  +R   D++  KD  +++++
Sbjct: 29  STKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSM 88

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           IS Y+ +G                              + HEA+    + +  S +RP+ 
Sbjct: 89  ISAYVHNG------------------------------HFHEAIGCFYQLLLVSEIRPDF 118

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T   +         L  G++IH +A K  +  N++VA ++I  Y++ GF   A+ +FD 
Sbjct: 119 YTFPPVLKA---CGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDD 175

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC----AHSGL 290
              R +  W A+IS    +G+A++A+ + +EM   GI+ + VT  ++L       A  GL
Sbjct: 176 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGL 235

Query: 291 VDKAWDIF 298
           +D A  +F
Sbjct: 236 LDSAHKVF 243



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           LF   +     K +H   V     ++I+++T +++ YA  G +  ++  FD+   + +  
Sbjct: 25  LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYA 84

Query: 243 WTAIISAYAAHGDASKAVSLFNE-MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           W ++ISAY  +G   +A+  F + +L + I+PD  TF  VL AC    LVD      +  
Sbjct: 85  WNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG--TLVDGR--KIHCW 140

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + + G Q +V   A ++ + SR      A      MP +     W A++ G   +G+   
Sbjct: 141 AFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS-WNAMISGLIQNGNAAQ 199

Query: 362 GKFVCDHLFEIEPENTG-NYI-------IMANLYSQAGRWDEADRVRE 401
              V D   E+  E    N++       +  ++Y++ G  D A +V E
Sbjct: 200 ALDVLD---EMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFE 244


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/538 (33%), Positives = 280/538 (52%), Gaps = 76/538 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN+MI GYSQ G YEE   LF EM+N    +PD +T+ S+LQACG   D+ F
Sbjct: 277 MVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEF 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKC------------------------------ 90
           G  VH+++I S  + D    N LI MYAKC                              
Sbjct: 335 GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQ 394

Query: 91  -GSLDYARALLDEMS---DKDEVSYSAIIS----------GYMVH--------------- 121
            GS D A  L   M      D V+Y  ++S          G  +H               
Sbjct: 395 NGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS 454

Query: 122 ----------GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
                     G +  ++ +F+ MK   + TWN +I+  V +      L ++  M+  GV 
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 514

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T+ SI  + S  +  + GKEIHG   K   + ++ V   +I+ Y+K G L  + +V
Sbjct: 515 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 574

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           F   K + ++ WTA+ISA   +G+  KAV  F EM   GI PD V F A++ AC+HSGLV
Sbjct: 575 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 634

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
           ++  + F+ M   Y I+P +EHYAC+V +LSR+  + +A +F+  MP+KP + +WGALL 
Sbjct: 635 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 694

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
              +SGD E+ + V + + E+ P++TG Y++++N+Y+  G+WD+   +R+ +K  GL K 
Sbjct: 695 ACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 754

Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           PG SW+E    +  F       ++ E++  +L  L GLM +EGY+     +L +++E+
Sbjct: 755 PGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDED 812



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 34/289 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+I+GY+  G++ E   ++    N  V+ PD  T+ SVL+ACG    +  
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV-PDSYTMSSVLRACGGLGSVEE 234

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  + +  IK D+ + N L+ MY K   L   R + D+M  +D VS++ +I GY  
Sbjct: 235 GDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQ 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+++ LF  M                                 +  +P+ +TI+SI
Sbjct: 295 VGLYEESIKLFMEM--------------------------------VNQFKPDLLTITSI 322

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                H  +L+ GK +H Y + + Y+ +   +  +I+ YAK G L  +Q VF   K +  
Sbjct: 323 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 382

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + W ++I+ Y  +G   +A+ LF +M+   ++PD VT+  +LS     G
Sbjct: 383 VSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLG 430



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 194/437 (44%), Gaps = 74/437 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WNS+I   +  G + E  +L+ E      L+PD  T  SV+ AC    D      +
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSET-QRIRLQPDTYTFPSVINACAGLLDFEMAKSI 137

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V++     DL+I NALI MY +   LD AR + +EM  +D VS++++ISGY  +G+ 
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY- 196

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN               L++    +  GV P++ T+SS+    
Sbjct: 197 -----------------WN-------------EALEIYYRFRNLGVVPDSYTMSSVLRAC 226

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               +++ G  IHG   K    +++ V   ++  Y K   L   +R+FD+   R  + W 
Sbjct: 227 GGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN 286

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------------ 292
            +I  Y+  G   +++ LF EM+N   +PD +T T++L AC H G ++            
Sbjct: 287 TMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 345

Query: 293 ------KAWDIFNAMSGQYG-IQPSVEHYA---C--------MVGVLSRARRISEATEFV 334
                  A +I   M  + G +  S E ++   C        M+ V  +     EA +  
Sbjct: 346 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF 405

Query: 335 SKMP--VKPSAKVWGALLYGASISGDVELGKFV-CDHLFEIEPENTGNYIIMAN----LY 387
             M   VKP +  +  LL  ++  GD+ LGK + CD    +      + I+++N    +Y
Sbjct: 406 KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCD----LAKMGFNSNIVVSNTLVDMY 461

Query: 388 SQAGRWDEADRVREQMK 404
           ++ G   ++ +V E MK
Sbjct: 462 AKCGEMGDSLKVFENMK 478


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 261/469 (55%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+++ G ++ G + E   L REM      +PD  T+ SVL    + +D+  
Sbjct: 133 MPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGC-KPDSFTLSSVLPIFAEGADVRR 191

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+H F   +    D+++ ++LI MYA C   DY+  + D +  +D +           
Sbjct: 192 GMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI----------- 240

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++G  QN   +  L L R M  SG++P  VT SS+
Sbjct: 241 --------------------LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSL 280

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                + ++L  GK++H Y ++  +D N+++++++ID Y K G +  A+R+FDR +   +
Sbjct: 281 IPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDI 340

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  +A HG A +A+ LF+ M    ++P+ +TF AVL+AC+H+GLVDK W  FN+
Sbjct: 341 VSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNS 400

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI PS+EH+A +   L R  ++ EA  F+S M +KP+A VW  LL    +  +  
Sbjct: 401 MSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTV 460

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   +F++EP + G++II++N YS +GRW+EA  +R+ M++ G+ K P  SWIE  
Sbjct: 461 LAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVK 520

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                FVA D S    E+I   L      M  +GYV     +  ++EEE
Sbjct: 521 NKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEE 569



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 185/398 (46%), Gaps = 35/398 (8%)

Query: 8   SWNSMI-AGYSQGGFYEECKALFREMLNSPVLRPDGV--TVVSVLQACGQSSDIVFGMEV 64
           SW   I    SQG F+       R   + P      V  ++   L++C        G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   + S    D +  NAL+ +Y K         L    S   E+  SA++        +
Sbjct: 81  HALALRSGAFADRFAANALLNLYCK---------LPAPPSHSPEMDGSAVV--------L 123

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E    +F  M    + +WN ++ G  ++ RH   L LVREM   G +P++ T+SS+  +F
Sbjct: 124 ESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIF 183

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  ++++ G E+HG+A +N +  +++V +++ID YA       + +VFD    R  I+W 
Sbjct: 184 AEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWN 243

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH--SGLVDK---AWDIFN 299
           ++++  A +G   +A+ LF  ML++GI+P PVTF++++ AC +  S L+ K   A+ I  
Sbjct: 244 SMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG 303

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
              G   I  S+    C  G +S ARRI +  +        P    W A++ G ++ G  
Sbjct: 304 GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ-------SPDIVSWTAMIMGHALHGPA 356

Query: 360 ELGKFVCDH--LFEIEPENTGNYIIMANLYSQAGRWDE 395
                + D   L  ++P N   ++ +    S AG  D+
Sbjct: 357 REALVLFDRMELGNLKP-NHITFLAVLTACSHAGLVDK 393


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 264/447 (59%), Gaps = 1/447 (0%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI GYS     EE   L+  ML   V   +  T   +L+AC   S      ++H  +
Sbjct: 86  WNTMIRGYSNSKEPEEALLLYHHMLYHSVPH-NAYTFPFLLKACSSMSASEETQQIHAHI 144

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+     +++  N+L+ +Y+K G +  AR L D++  +D VS++++I GY   G +E A 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAY 204

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           ++F  M    + +W ++ISG V   + +  L+L   MQ +G++ + V + S     +   
Sbjct: 205 EIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLG 264

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  GK IH Y  K+  + +  +   +ID YAK G L  A  VF + + + + +WTA+IS
Sbjct: 265 VLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMIS 324

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA HG   +A+  F +M   G++P+ +TFT +L+AC+H+GLV +A  +F +M   +G +
Sbjct: 325 GYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFK 384

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           PS+EHY CMV +L RA  + EA E +  MPVKP+A +WGALL    I G++ELGK +   
Sbjct: 385 PSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKI 444

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           L +++P + G YI +A++++ AG W++A RVR QMKE G++K+PG S I  +G    F+A
Sbjct: 445 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 504

Query: 429 KDTSGDKSEQIYLILERLLGLMREEGY 455
            D S  + ++I  +LE+++  +REEGY
Sbjct: 505 GDESHPQIKEIDHMLEQIVERLREEGY 531



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 79/311 (25%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREM------------------------------ 32
           +RD VSWNSMI GY++ G  E    +F  M                              
Sbjct: 181 QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHR 240

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           + +  ++ D V +VS LQAC     +  G  +H ++ +  I++D  +   LI MYAKCG 
Sbjct: 241 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD 300

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           L+ A  +  +M +K    ++A+ISGY +HG   +A++ F                     
Sbjct: 301 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFM-------------------- 340

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK-------EIHGYAVKNRY 205
                      +MQ +GV PN +T + I +  SH   +   K        IHG      +
Sbjct: 341 -----------KMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG------F 383

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFN 264
             +I     ++D   + G L  A+ + +    + +  IW A+++A   HG+    + L  
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN----LELGK 439

Query: 265 EMLNNGIQPDP 275
           ++    IQ DP
Sbjct: 440 QIGKILIQVDP 450



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 150/361 (41%), Gaps = 44/361 (12%)

Query: 84  IGMYAKCGSLDYARALLDEMSDK----DEVSYSAIIS--GYMVHGFVEKAMDLFQVMKRP 137
           + +  +C +++  R +  +M       DE+  S +++       G +  A  +F  + RP
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
               WN +I G   +   E  L L   M    V  NA T   +    S  S  +  ++IH
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIH 141

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR----------------------- 234
            + +K  +   IY   ++++ Y+K+G +  A+ +FD+                       
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 235 --------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
                      R++I WT++IS     G   +A++LF+ M   GI+ D V   + L ACA
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 287 HSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
             G++D+  W   +A   ++ I+        ++ + ++   + EA E   KM  K    V
Sbjct: 262 DLGVLDQGKW--IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEK-GVSV 318

Query: 346 WGALLYGASISGDVE--LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           W A++ G +I G     L  F+      +EP N   +  +    S AG   EA  + E M
Sbjct: 319 WTAMISGYAIHGRGREALEWFMKMQTAGVEP-NQMTFTGILTACSHAGLVHEAKLLFESM 377

Query: 404 K 404
           +
Sbjct: 378 E 378


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 265/468 (56%), Gaps = 36/468 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++ +VSWNSM+ GY Q G  E+  A+F +ML   +  P GVT++  L AC    D+  
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI-DPTGVTIMEALHACADLGDLER 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH FV + ++  D+ + N+LI MY+KC  +D A  + + ++ +  VS          
Sbjct: 368 GKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS---------- 417

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN R    L+   EM++ G++P++ T+ S+
Sbjct: 418 ---------------------WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSV 456

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S  +  K IHG  +++  D+NI+V TA++D Y+K G +H A+++FD    R +
Sbjct: 457 IPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHV 516

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y  HG    A+ LF++M    ++P+ +T+ +V+SAC+HSGLVD+    F +
Sbjct: 517 ITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKS 576

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++PS++HY  MV +L RA RI EA +F+  MP+ P   V+GA+L    I  ++E
Sbjct: 577 MKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIE 636

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+     LFE+ P+  G ++++AN+Y+   +W +   VR+ M++ GL K PG S +E  
Sbjct: 637 VGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELR 696

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV----LLDEVEEE 464
             + SF +  T+  +S++IY  LE L+  ++  GYV    L+ +VE++
Sbjct: 697 NEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDD 744



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 172/351 (49%), Gaps = 34/351 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +++M+ GY++    E   A    M    V +P       +L+ CG ++D+  G E+H  +
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDV-KPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I +    +++    ++ MYAKC  +D A  + D M ++D VS++ II+G+  +GF +KA 
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA- 232

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                                         L+LV  MQ  G RP+++T+ ++    +   
Sbjct: 233 ------------------------------LELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  GK IHGYA++  + + + ++TA+ D Y+K G +  A+ +FD    ++++ W +++ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            Y  +G+  KA+++F +ML  GI P  VT    L ACA  G +++     +    Q  + 
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLG 381

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             +     ++ + S+ +R+  A++  + +  +     W A++ G + +G V
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS-WNAMILGYAQNGRV 431



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 195/412 (47%), Gaps = 47/412 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN++IAG+SQ GF ++   L   M +    RPD +T+V+VL A      ++ 
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG-QRPDSITLVTVLPAAADVGLLMV 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + I +     + I  AL  MY+KCGS++ AR + D M  K  VS+++++ GY+ 
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  EKA+ +F+                               +M   G+ P  VTI   
Sbjct: 327 NGEPEKAIAVFE-------------------------------KMLEEGIDPTGVTIMEA 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+ GK +H +  +     +I V  ++I  Y+K   +  A  +F+   GR+ 
Sbjct: 356 LHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFN 299
           + W A+I  YA +G  S+A++ F+EM + G++PD  T  +V+ A A   +   A W   +
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW--IH 473

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +  +  +  ++     +V + S+   I  A +    M        W A++ G    G  
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHG-- 530

Query: 360 ELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            LG+   D LF+      +EP N   Y+ + +  S +G  DE  R  + MK+
Sbjct: 531 -LGRAALD-LFDKMKKGAVEP-NDITYLSVISACSHSGLVDEGLRHFKSMKQ 579



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 40/325 (12%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + ++S +  +G + +A  +F+ +     + ++ ++ G  +N+  E  L  +  M+   V+
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P     + +  +    ++LK GKEIHG  + N +  N++  T +++ YAK   +  A ++
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR   R L+ W  II+ ++ +G A KA+ L   M + G +PD +T   VL A A  GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 292 ---------------DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS-------- 328
                           K  +I  A++  Y    SVE    +   + +   +S        
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 329 -------EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
                  +A     KM    + P+       L+  +  GD+E GKFV  H F ++  N G
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV--HKF-VDQLNLG 381

Query: 379 NYIIMAN----LYSQAGRWDEADRV 399
           + I + N    +YS+  R D A  +
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDI 406



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 194 KEIH---GYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           KE+H      +KN  Y+ +++  T ++  ++K G ++ A RVF+    +   ++  ++  
Sbjct: 63  KELHQIIPLVIKNGLYNEHLF-QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKG 121

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           YA +     A++    M  + ++P    FT +L  C  +  + +  +I     GQ     
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEI----HGQLITNS 177

Query: 310 SVEHYACMVGVL---SRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +   M GV+   ++ R+I +A +   +MP +     W  ++ G S +G
Sbjct: 178 FAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGFSQNG 227


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 257/455 (56%), Gaps = 32/455 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S  D V   +MI+GY   G  +E    FR ++    ++P  VT  S+  A    + +  G
Sbjct: 322 SSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER-MKPTSVTFSSIFPAFAGLAALNLG 380

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H  +I++ +     + +A++ MYAKCG LD A  + + +++KD +            
Sbjct: 381 KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAI------------ 428

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WN++I+   QN R    ++L R+M   G R + V+IS   
Sbjct: 429 -------------------CWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGAL 469

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  ++   L  GKEIHG  +K     ++Y  +++ID YAK G L+ ++RVFDR + ++ +
Sbjct: 470 SACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEV 529

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W +IISAY  HGD  + ++LF+EML NGIQPD VTF  ++SAC H+G VD+    ++ M
Sbjct: 530 SWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLM 589

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + +YGI   +EHYAC+  +  RA R+ EA E ++ MP  P A VWG LL    I G+VEL
Sbjct: 590 TEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVEL 649

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    HLF+++P N+G Y+++AN+ + AG+W +  +VR  MKE G+ K+PG SWIE + 
Sbjct: 650 AEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNN 709

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               FVA D S   + QIY +L+ LL  +++EGYV
Sbjct: 710 ATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 210/426 (49%), Gaps = 59/426 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D+VSWN +I+GY Q G   E + LFR M+++ + +PD +T  S L    +   +  
Sbjct: 220 LPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGI-KPDSITFASFLPCVNELLSLKH 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H ++I   + +D+++ +ALI +Y KC  ++ A+  L + S  D V  + +ISGY++
Sbjct: 279 CKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVL 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++A++ F+         W                  LV+E     ++P +VT SSI
Sbjct: 339 NGKNKEALEAFR---------W------------------LVQER----MKPTSVTFSSI 367

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F  F+  + L  GKE+HG  +K + D   +V +AI+D YAK G L  A RVF+R   +  
Sbjct: 368 FPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDA 427

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W ++I++ + +G   +A++LF +M   G + D V+ +  LSACA+   +    +I   
Sbjct: 428 ICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGL 487

Query: 301 M------SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           M      S  Y     ++ YA   G L+ +RR+ +  +       + +   W +++    
Sbjct: 488 MIKGPLRSDLYAESSLIDMYA-KCGNLNFSRRVFDRMQ-------EKNEVSWNSIISAYG 539

Query: 355 ISGDVELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             GD++     C  LF       I+P++   ++ + +    AG+ DE  R    M E   
Sbjct: 540 NHGDLK----ECLALFHEMLRNGIQPDHV-TFLGIISACGHAGQVDEGIRYYHLMTEE-- 592

Query: 409 AKIPGR 414
             IP R
Sbjct: 593 YGIPAR 598



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D V WN M+ GY + G       +F EM +S + +P+ VT   VL  C   + +  
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEI-KPNSVTFACVLSVCASEAMLDL 177

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   +   +++D  + N L+ MY+KC  L  AR L D +   D VS          
Sbjct: 178 GTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVS---------- 227

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +ISG VQN        L R M ++G++P+++T +S 
Sbjct: 228 ---------------------WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASF 266

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +LK  KEIHGY +++    ++++ +A+ID Y K   +  AQ+   +      
Sbjct: 267 LPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDT 326

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           ++ T +IS Y  +G   +A+  F  ++   ++P  VTF+++  A A
Sbjct: 327 VVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFA 372



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 32/275 (11%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN MI G++  G +      + +ML + V  PD  T   V++AC     +  G  VH  
Sbjct: 25  AWNWMIRGFTMMGQFNYALLFYLKMLGAGV-SPDKYTFPYVVKACCGLKSVKMGKIVHET 83

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V    +K D+++ ++LI +YA+ G L  A+ L D +  KD V                  
Sbjct: 84  VNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSV------------------ 125

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WN +++G V+N      + +  EM+ S ++PN+VT + + S+ +  
Sbjct: 126 -------------LWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASE 172

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           + L  G ++HG AV    + +  VA  ++  Y+K   L  A+++FD      L+ W  II
Sbjct: 173 AMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGII 232

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           S Y  +G   +A  LF  M++ GI+PD +TF + L
Sbjct: 233 SGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y+  G ++ A +LF  ++    S WN +I G     +    L    +M  +GV P+  T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +        ++K GK +H          +++V +++I  YA+ G L  AQ +FD    
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  ++W  +++ Y  +GD+  A+ +F EM ++ I+P+ VTF  VLS CA   ++D    +
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
                G  G++        ++ + S+ + +  A +    +P
Sbjct: 182 HGIAVG-CGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP 221


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 282/506 (55%), Gaps = 43/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K+++V +N MI  Y     Y +   +F+ M    +  PD  T   VL+A   S D+  
Sbjct: 97  IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGI-DPDHYTYPCVLKASSGSEDLWV 155

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM++H  V+   + +++++ N LI MY KCG L  A  +LD+M  +D VS++++++G   
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCAR 215

Query: 121 HGFVEKAMDLFQVMKRPGLS-------------------------------------TWN 143
           +G  + A+++ + M+  GL                                      +WN
Sbjct: 216 NGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWN 275

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I+  + N+     +D+  +M+   V P+A++I+S+       S L  G+ IH Y V+ 
Sbjct: 276 VMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK 335

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           R   N+ +  A+ID YAK G L  A+ VFD+ K R ++ WT++ISAY  +G    AVSLF
Sbjct: 336 RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLF 395

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           + M + G+ PD + F +VLSAC+H+GL+D+    F  M+ +  I P +EH+ CMV +L R
Sbjct: 396 SRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGR 455

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A ++ EA  F+ +MP++P+ +VWGALL    +  ++ +G    D LF++ PE +G Y+++
Sbjct: 456 AGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLL 515

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW++   VR  MK  G+ K+PG S  E    + +F+A D S  +S+QIY  L
Sbjct: 516 SNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEEL 575

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
           +  +G M+E GYV      L +VEEE
Sbjct: 576 DVSVGKMKEAGYVPETDSALHDVEEE 601



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 134/299 (44%), Gaps = 15/299 (5%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           ++  Y V G       +F  + +  +  +N +I   V N+ +   L + + M   G+ P+
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +    S   +L  G +IH   V+   D N++V   +I  Y K G L  A RV D
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +   R ++ W ++++  A +G    A+ +  EM   G++PD  T  ++L A  ++ L + 
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 294 AW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGA 348
           ++  ++F  ++ +     S+  +  M+ V       +EA +   +M    V P A    +
Sbjct: 257 SFVKEMFMKLANK-----SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMK 404
           +L        + LG+ +  H + +      N ++   + ++Y++ G  + A  V +QMK
Sbjct: 312 VLPACGDLSALLLGRRI--HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMK 368


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 264/448 (58%), Gaps = 2/448 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++R +VSW +M++GY QGG+Y E   LF++M    V+ PD V +V+VL AC    D   
Sbjct: 328 MNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI-PDEVALVTVLSACVHLEDFDL 386

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH F++   + +D ++ NAL+ +YAKCG LD A    +++  K   S+++++ G+  
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR 446

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+KA D F  +    + +WN +++  V+++      ++  +MQ+S V+P+  T+ S+
Sbjct: 447 SGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISL 506

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G  ++ Y  KN    +  + TA+ID Y K G +  A  +F +   +++
Sbjct: 507 LSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNV 566

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            +WTA+++AYA  G A +A+ L+ EM   G++PD VTF A+L+AC+H GLVD+ +  FN 
Sbjct: 567 FVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNK 626

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +   Y I P++ HY CMV +L R   + E  +F+ +MP++P   +W +L+       +VE
Sbjct: 627 LRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVE 686

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L EI+P N G +++++N+Y+ AGRWD+  +VR ++ E+G+ K PG + IE +
Sbjct: 687 LAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQN 746

Query: 421 GGLQSFVAKD-TSGDKSEQIYLILERLL 447
           G +  FVA +  S D    +  I  RLL
Sbjct: 747 GVVHEFVASNLVSADILCMLQDIERRLL 774



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 208/416 (50%), Gaps = 20/416 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD++SWN+MI+ Y   G Y E   LF EML S VL PD +T+VS++  C +  D+  
Sbjct: 194 MTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVL-PDEITMVSLVSTCAKLKDLEM 252

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISGY 118
           G  +H +++++ + +   + N L+ MY+KCG +D A  LL   + S+ D V ++ ++SGY
Sbjct: 253 GKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGY 312

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +    ++KA  LF  M    L +W  ++SG VQ   +   L+L ++M+   V P+ V + 
Sbjct: 313 VKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALV 372

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S   H  +   G+ +H + V      + ++  A++D YAK G L  A R F++   +
Sbjct: 373 TVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S   W +++  +   G   KA   FN++     + D V++  +++A     L +++++IF
Sbjct: 433 SAASWNSMLDGFCRSGGVDKARDFFNKI----PEKDIVSWNTMVNAYVKHDLFNESFEIF 488

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATE------FVSKMPVKPSAKVWGALLYG 352
             M     ++P       ++ +LS   ++           ++ K  +   A +  AL+  
Sbjct: 489 CKMQSS-NVKPD---KTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDM 544

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
               G VE+   +   + E   +N   +  M   Y+  G+  EA  +  +M+E G+
Sbjct: 545 YGKCGCVEMAYEIFTQIIE---KNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGV 597



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 193/435 (44%), Gaps = 70/435 (16%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + WN+++    + G  +E    +  M+   VL  D  T   ++ AC ++ D+  G EVH 
Sbjct: 99  IIWNTLLENKLKEGCPQEVLECYYHMVTQGVLL-DISTFHFLIHACCKNFDVKLGSEVHG 157

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +++     +  + N L+G+Y+KCG L     L ++M+ +D +S++ +IS Y++ G   +
Sbjct: 158 RILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYRE 217

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+DLF                                EM  SGV P+ +T+ S+ S  + 
Sbjct: 218 ALDLFD-------------------------------EMLVSGVLPDEITMVSLVSTCAK 246

Query: 187 FSNLKGGKEIHGYAVKNRY---------------------------------DRNIYVAT 213
             +L+ GK +H Y V N+                                  + ++ + T
Sbjct: 247 LKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
            ++  Y K+  +  A+++FD+   RSL+ WT ++S Y   G   +++ LF +M    + P
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIP 366

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D V    VLSAC H    D    + +A    YG+         ++ + ++  ++ EA   
Sbjct: 367 DEVALVTVLSACVHLEDFDLGRSV-HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
             ++P K SA  W ++L G   SG V+  +   D   +I  ++  ++  M N Y +   +
Sbjct: 426 FEQLPCK-SAASWNSMLDGFCRSGGVDKAR---DFFNKIPEKDIVSWNTMVNAYVKHDLF 481

Query: 394 DEADRVREQMKESGL 408
           +E+  +  +M+ S +
Sbjct: 482 NESFEIFCKMQSSNV 496



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 161/370 (43%), Gaps = 43/370 (11%)

Query: 37  VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96
           VLRP  +  + +L++C   S+I     +H  +I +++  D  I + ++       +LD A
Sbjct: 32  VLRPHWI--IDLLKSC---SNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCA 86

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             +L         SYS                        P    WN ++   ++    +
Sbjct: 87  HQIL---------SYS----------------------HEPESIIWNTLLENKLKEGCPQ 115

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
            VL+    M   GV  +  T   +        ++K G E+HG  +K  + RN  +   ++
Sbjct: 116 EVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLM 175

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             Y+K G L    ++F++   R +I W  +IS Y   G   +A+ LF+EML +G+ PD +
Sbjct: 176 GLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEI 235

Query: 277 TFTAVLSACAHSGLVDKAWDI-FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           T  +++S CA    ++    +    +  +  I+ S+    C+V + S+  ++ EA   +S
Sbjct: 236 TMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL--LNCLVDMYSKCGKMDEAHGLLS 293

Query: 336 KM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
           +    +    +W  L+ G   S  ++  + + D + E    +  ++  M + Y Q G + 
Sbjct: 294 RCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNE---RSLVSWTTMMSGYVQGGYYC 350

Query: 395 EADRVREQMK 404
           E+  + +QM+
Sbjct: 351 ESLELFQQMR 360


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 274/457 (59%), Gaps = 2/457 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K ++ SWNS+IA  ++ G   E    F  M     L+P+  T    +++C    D+  
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSM-RKLSLKPNRSTFPCAIKSCSALLDLHS 94

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   +    + DL++ +AL+ MY+KCG L  AR L DE+S ++ VS++++I+GY+ 
Sbjct: 95  GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 154

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISS 179
           +    +A+ +F  M    + +WN++I+   QN      +++   M   G +  NAVT+S+
Sbjct: 155 NDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSA 214

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    +H  + + GK IH   +K   + N++V T+IID Y K G +  A++ FDR + ++
Sbjct: 215 VLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKN 274

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +  W+A+++ Y  HG A +A+ +F EM   G++P+ +TF +VL+AC+H+GL+++ W  F 
Sbjct: 275 VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFK 334

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           AMS ++ ++P VEHY CMV +L RA  + EA + +  M ++P   VWGALL    +  +V
Sbjct: 335 AMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNV 394

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +LG+     LFE++P+N G Y++++N+Y+ AGRW++ +R+R  MK SGL K PG S ++ 
Sbjct: 395 DLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDI 454

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G +  F+  D    + E+IY  LE+L   ++E GYV
Sbjct: 455 KGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 491


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 262/455 (57%), Gaps = 33/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSW +MI  Y++ G +++   LF+EM     +RPD   + S L A   +  +  
Sbjct: 146 MEQKNVVSWTAMITSYTRAGHFDKVAGLFQEM-GLEGIRPDVFAITSALDAFAGNESLKH 204

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH + I + I+  L + NAL+ MY KCG ++ AR + D ++ KD +S++ +I GY  
Sbjct: 205 GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSR 264

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                +A  LF  M              L+Q                  +RPNAVT++ I
Sbjct: 265 SNLANEAFTLFNEM--------------LLQ------------------LRPNAVTMACI 292

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+L+ G+E+H YAV+  Y  + +VA A++D Y K G L  A+R+FD    ++L
Sbjct: 293 LPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNL 352

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT +I+ Y  HG    A++LF +M  +GIQPD  +F+A+L AC+HSGL D+ W  FNA
Sbjct: 353 ISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNA 412

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I+P ++HYACMV +L     + EA EF+  MP++P + +W +LL G  I  +V+
Sbjct: 413 MRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVK 472

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +FE+EPENTG Y+++AN+Y++A RW+   +++ ++   GL +  G SWIE  
Sbjct: 473 LAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVR 532

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G    F A++ +  +  +I   L+ +   M+EEG+
Sbjct: 533 GKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGH 567



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 184/414 (44%), Gaps = 71/414 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M +RDI+SWNS+I G +  G Y++   LF  M L    L  D  T++SV+ AC QS    
Sbjct: 45  MPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQEL--DSTTLLSVMPACVQSHYSF 102

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  VH + + + +  +  + NAL+ MY+ C        +   M  K+ VS++A+I+ Y 
Sbjct: 103 IGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYT 162

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G  +K   LFQ                               EM   G+RP+   I+S
Sbjct: 163 RAGHFDKVAGLFQ-------------------------------EMGLEGIRPDVFAITS 191

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
               F+   +LK GK +HGYA++N  +  + VA A+++ Y K G++  A+ +FD    + 
Sbjct: 192 ALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKD 251

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            I W  +I  Y+    A++A +LFNEML   ++P+ VT   +L A A    +++  ++  
Sbjct: 252 TISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREM-- 308

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
                         YA   G L           FV+   V    K  GALL         
Sbjct: 309 ------------HAYAVRRGYLE--------DNFVANALVDMYVKC-GALL--------- 338

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            L + + D L     +N  ++ IM   Y   GR  +A  + EQMK SG+    G
Sbjct: 339 -LARRLFDML---TNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAG 388



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 52/349 (14%)

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH ++++        +CNALI  YAK                               
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNR---------------------------- 34

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +E A+ +F  M +  + +WN++I G   N  ++  ++L   M   G   ++ T+ S+
Sbjct: 35  ---IEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSV 91

Query: 181 F--SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
               + SH+S + G   +HGY+V+        +  A++D Y+         ++F   + +
Sbjct: 92  MPACVQSHYSFIGG--VVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQK 149

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVDK 293
           +++ WTA+I++Y   G   K   LF EM   GI+PD    T+ L A A       G    
Sbjct: 150 NVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVH 209

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            + I N +     +  ++       G +  AR       F+     K     W  L+ G 
Sbjct: 210 GYAIRNGIEEVLPVANALMEMYVKCGYMEEAR-------FIFDHVTKKDTISWNTLIGGY 262

Query: 354 SISGDV-ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
           S S    E      + L ++ P    N + MA +   A      +R RE
Sbjct: 263 SRSNLANEAFTLFNEMLLQLRP----NAVTMACILPAAASLSSLERGRE 307


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 257/432 (59%), Gaps = 6/432 (1%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD  T   VL+AC + SD+V G  +H    +     +L++ N ++ +Y  CG +  A  L
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            ++M  +D V+++ +I+     G ++ A   F  M    + +W ++ISG VQ  +    +
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           DL  +++   VRPN VT+ S+ +  +   +L  G+ +H Y+ K+ + RN++V   +ID Y
Sbjct: 128 DLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMY 187

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K G L  A+RVF   + R+++ W+A+I+  A HG A +A+ LF+EM+  G++P+ VTF 
Sbjct: 188 VKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFI 247

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
            +L AC+H GL+D+    F +M+  YG+ P +EHY C+V + SRA  + EA EF+  MP+
Sbjct: 248 GLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPI 307

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           KP+  VWGALL G  +  +++L +    HL E++P N G Y++++N+Y++A RW++A RV
Sbjct: 308 KPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARV 367

Query: 400 REQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY---- 455
           R+ MK+ G+ K  G S I  +G +  FVA D +  ++E I  I ++LL  M+  GY    
Sbjct: 368 RKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKT 427

Query: 456 --VLLDEVEEES 465
             VLLD  E+E 
Sbjct: 428 SVVLLDMEEKEK 439



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 6/200 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++ SW SMI+G+ Q G   E   LF ++ +  V RP+ VTVVSVL AC    D+  
Sbjct: 102 MPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAV-RPNEVTVVSVLAACADLGDLDL 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +  +S  K ++ +CN LI MY KCG L+ AR +  EM ++  VS+SA+I+G  +
Sbjct: 161 GRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAM 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GVRPNAV 175
           HG  E+A+ LF  M + G+        GL+    H  ++D  R   AS     GV P   
Sbjct: 221 HGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIE 280

Query: 176 TISSIFSLFSHFSNLKGGKE 195
               +  LFS    L+   E
Sbjct: 281 HYGCVVDLFSRAGLLEEAHE 300



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 46/277 (16%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY----- 219
           M+   V P+  T S +       S++  GK IHG   K  +  N+++   I++ Y     
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 220 --------------------------AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
                                     AK G + GA   F R   +++  WT++IS +   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
           G  ++A+ LF ++ +  ++P+ VT  +VL+ACA  G +D    I +  S + G + +V  
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHV 179

Query: 314 YACMV------GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
              ++      G L  ARR+    E       + +   W A++ G ++ G  E    +  
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEME-------ERTVVSWSAMIAGLAMHGQAEEALCLFS 232

Query: 368 HLFEIEPENTG-NYIIMANLYSQAGRWDEADRVREQM 403
            + ++  +  G  +I + +  S  G  DE  R    M
Sbjct: 233 EMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASM 269


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 258/451 (57%), Gaps = 5/451 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN-F 67
           W ++I GY+  G + E   L+  M    +  P   T  ++L+AC  + D+  G +VH   
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGI-GPVSFTFTALLKACSAALDVNLGRQVHTQT 165

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           ++      DL++ N LI MY KCG L     + DEM D+D +S++++I  Y   G +E A
Sbjct: 166 ILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAA 225

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            +LF  +    +  W A+++G  QN R    L++   MQA+GV+ + VT+  + S  +  
Sbjct: 226 SELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQL 285

Query: 188 SNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
              K    +   A ++ +    N+ V +A+ID YAK G +  A +VF+R + R++  +++
Sbjct: 286 GAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSS 345

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  +A HG A  A+ LF+EML   I+P+ VTF  VL+AC+H+G+V++   +F  M   +
Sbjct: 346 MIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECH 405

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G+ PS +HYACMV +L RA R+ EA   V  MP+ P   VWGALL    I G+ ++ +  
Sbjct: 406 GVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIA 465

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG-LQ 424
             HLFE+EP   GNYI+++N+Y+ AGRWD+  +VR+ M+  GL K PG SW+E   G + 
Sbjct: 466 ASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIH 525

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            F A D S  KS +I   LE LL  ++  GY
Sbjct: 526 EFFAGDMSHPKSREIKQALEDLLDRLKYLGY 556



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 168/415 (40%), Gaps = 75/415 (18%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD-----YARAL 99
           +VSVL  C   + +    +VH  +    ++   ++   L+    K   LD     Y R +
Sbjct: 42  LVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTK---LDVPMDPYPRLV 95

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
             ++   +   ++A+I GY + G   +++ L+  M+R G+   +   + L++       +
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155

Query: 160 DLVREMQAS-----GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +L R++        G   +    +++  ++     L  G  +         DR++   T+
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRV----FDEMLDRDVISWTS 211

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I  YAK G +  A  +FD    + ++ WTA+++ YA +    +A+ +F  M   G++ D
Sbjct: 212 LIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTD 271

Query: 275 PVTFTAVLSACAH-------------------------------------SGLVDKAWDI 297
            VT   V+SACA                                       G V+ A+ +
Sbjct: 272 EVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKV 331

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGAS 354
           F  M      + +V  Y+ M+   +       A E   +M    +KP+   +  +L   S
Sbjct: 332 FERME-----ERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACS 386

Query: 355 ISGDVELGKFVCDHLFEIEPENTG------NYIIMANLYSQAGRWDEADRVREQM 403
            +G VE G+     LF +  E  G      +Y  M +L  +AGR +EA  + + M
Sbjct: 387 HAGMVEQGQ----QLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM 437



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 123/314 (39%), Gaps = 80/314 (25%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR------------------------------ 30
           M  RD++SW S+I  Y++ G  E    LF                               
Sbjct: 201 MLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVF 260

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYA 88
           E + +  ++ D VT+V V+ AC Q     +   V +   +S      ++ + +ALI MYA
Sbjct: 261 ERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYA 320

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCGS++ A  + + M +++  SYS++I G+ +HG    AM+LF                 
Sbjct: 321 KCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD---------------- 364

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK-------EIHGYAV 201
                          EM  + ++PN VT   + +  SH   ++ G+       E HG A 
Sbjct: 365 ---------------EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAP 409

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-IIWTAIISAYAAHGD---AS 257
              +         ++D   + G L  A  +           +W A++ A   HG+   A 
Sbjct: 410 SEDH------YACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQ 463

Query: 258 KAVSLFNEMLNNGI 271
            A S   E+  NGI
Sbjct: 464 IAASHLFELEPNGI 477



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 20/240 (8%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA--QRVFDRF 235
           S + S+    +++   K++H +  +   ++  +V   ++ T  K         + VF + 
Sbjct: 40  SRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQV 99

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           +  +  +WTA+I  YA  G   ++V L+N M   GI P   TFTA+L AC+ +  V+   
Sbjct: 100 EYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGR 159

Query: 296 DIFNA--MSGQYG----IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            +     + G +G    +  ++       G L    R+ +  E + +  +      W +L
Sbjct: 160 QVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFD--EMLDRDVIS-----WTSL 212

Query: 350 LYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +   +  G++E        LF+  P ++   +  M   Y+Q  R  EA  V E+M+ +G+
Sbjct: 213 IVAYAKVGNMEAA----SELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGV 268



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ S++SMI G++  G       LF EML + + +P+ VT + VL AC  +  +  
Sbjct: 335 MEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEI-KPNRVTFIGVLTACSHAGMVEQ 393

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G ++   + E H      D + C  ++ +  + G L+ A  L+  M  +     + A++ 
Sbjct: 394 GQQLFAMMEECHGVAPSEDHYAC--MVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLG 451

Query: 117 GYMVHGFVEKAM----DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
              +HG  + A      LF+ ++  G+  +  + +      R + V  + + M+A G++ 
Sbjct: 452 ACRIHGNPDMAQIAASHLFE-LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKK 510

Query: 173 N 173
           N
Sbjct: 511 N 511


>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 251/417 (60%), Gaps = 7/417 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+ ++ +W +++  YS+ G  +EC   + EM    VL PD      V +ACGQ   +  
Sbjct: 423 LSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVL-PDKYVFPKVFRACGQLLWLEV 481

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH  V+    + DL +CN+LI MY+K G +   R + DEM ++D +S++++ISGY  
Sbjct: 482 GIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYCK 541

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              ++ A+++F++M R  + TWNA+I G V        L+   +MQ SG+  N +TIS++
Sbjct: 542 R--IQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTV 599

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +LK GK++H Y  KN +   I V  A+I  Y+K G +  A  +F     R L
Sbjct: 600 LPA----CDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDL 655

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  +  HG    A+ L  +M ++ + P+ VTFT+ LSAC+HSGLVD+  ++F+ 
Sbjct: 656 VSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHT 715

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +G  P +EH++C+V +L+RA R+ +A  F+ KMP+KPS  +W ALL       +V 
Sbjct: 716 MTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVS 775

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + K   + LF++EPE+ GNY+ ++N+Y++AGRWD+A  VR+ M++ GL K  G SWI
Sbjct: 776 VAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 832



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 125/327 (38%), Gaps = 45/327 (13%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  LF  + +P +  W A++    +N   +  +    EM+  GV P+      +F     
Sbjct: 416 AQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQ 475

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G ++H   V    + ++ V  ++ID Y+K+G +   +RVFD    R ++ W ++
Sbjct: 476 LLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSM 535

Query: 247 ISAYAAH-GDASK----------------------------AVSLFNEMLNNGIQPDPVT 277
           IS Y     DA                              A+  F++M  +GI  + +T
Sbjct: 536 ISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQIT 595

Query: 278 FTAVLSAC-AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
            + VL AC   SG    A+   N+ S    +  ++ H     G +  A  I   +  +S+
Sbjct: 596 ISTVLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSI--FSNMISR 653

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE----NTGNYIIMANLYSQAGR 392
             V      W  ++ G  + G   LG+F    L ++       N+  +    +  S +G 
Sbjct: 654 DLVS-----WNTMIGGFGMHG---LGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGL 705

Query: 393 WDEADRVREQMKESGLAKIPGRSWIEC 419
            DE   +   M        PG     C
Sbjct: 706 VDEGMELFHTMTRD-FGFTPGMEHFSC 731


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 269/460 (58%), Gaps = 8/460 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNS+I  Y Q G   E   +F+ ML S V  PD VT+ SV+ AC   S I  
Sbjct: 213 MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWV-EPDEVTLASVISACASLSAIKV 271

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G EVH  V++   ++ D+ + NA + MYAKC  +  AR + D M  ++ ++ ++++SGY 
Sbjct: 272 GQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYA 331

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +    + A  +F  M    + +WNA+I+G  QN  +E  L L   ++   V P   T ++
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFAN 391

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           I    +  ++L  G + H + +K+ +      + +I+V  ++ID Y K G +     VF 
Sbjct: 392 ILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +   R  + W A+I  +A +G  ++A+ LF EML++G +PD +T   VLSAC H+G V++
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEE 511

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F++M+  +G+ P  +HY CMV +L RA  + EA   + +MPV+P + +WG+LL   
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAAC 571

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  ++ LGK+V + LFE+E  N+G Y++++N+Y++ G+W +A  VR+ M++ G+ K PG
Sbjct: 572 KVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPG 631

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
            SWI+  G    F+ KD S  + +QI+ +L+ L+  MR++
Sbjct: 632 CSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMRQK 671



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 151/277 (54%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  VI+S    +++I N LI  YAKCGSL+  R L D+M  ++  +++++++G    GF
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +++A  LF+ M      TWN+++SG  Q++R E  L     M   G   N  T +S  S 
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  +++  G +IH    K+    ++Y+ +A++D Y+K G ++ AQ+VFD    R+++ W
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            ++I+ Y  +G A +A+ +F  ML + ++PD VT  +V+SACA    +    ++   +  
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
              ++  +      V + ++  RI EA      MP++
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 155/318 (48%), Gaps = 64/318 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD  +WNSM++G++Q    EE    F  M++      +  T  S L AC   +D+  
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALYYF-AMMHKEGFVLNEYTFASGLSACSGLNDMNR 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H+ + +S    D++I +AL+ MY+KCG+++ A+ + DEM D++ VS++++I+ Y  
Sbjct: 171 GVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQ 230

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+ +FQVM    L +W                           V P+ VT++S+
Sbjct: 231 NGPAVEALKVFQVM----LESW---------------------------VEPDEVTLASV 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFD------ 233
            S  +  S +K G+E+H   VK    RN I ++ A +D YAK   +  A+ +FD      
Sbjct: 260 ISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319

Query: 234 -------------------------RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                                    +   R+++ W A+I+ Y  +G+  +A+SLF  +  
Sbjct: 320 VIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379

Query: 269 NGIQPDPVTFTAVLSACA 286
             + P   TF  +L ACA
Sbjct: 380 ESVCPTHYTFANILKACA 397


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 270/476 (56%), Gaps = 11/476 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSW++MI   S+   ++    L REM N   +RP  V +VS++     ++++  
Sbjct: 185 MMERDVVSWSTMIRSLSRNKEFDMALELIREM-NFMQVRPSEVAMVSMVNLFADTANMRM 243

Query: 61  GMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G  +H +VI +  +  M +    AL+ MYAKCG L  AR L + ++ K  VS++A+I+G 
Sbjct: 244 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 303

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +    +E+A  LF   +   +  W A++S   Q N  +   +L  +M+ SGVRP  VTI 
Sbjct: 304 IRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIV 363

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ SL +    L  GK +H Y  K R + +  + TA++D YAK G ++ A R+F     R
Sbjct: 364 SLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISR 423

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + +W AII+ +A HG   +A+ +F EM   G++P+ +TF  +L AC+H+GLV +   +F
Sbjct: 424 DICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF 483

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   +G+ P +EHY CMV +L RA  + EA E +  MP+KP+  VWGAL+    +  +
Sbjct: 484 EKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKN 543

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +LG+     L EIEPEN G  ++M+N+Y+ A RW +A  VR+ MK  G+ K PG S IE
Sbjct: 544 PQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIE 603

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
            +G +  F+  D S  +  +I  +L  +   + E GYV         +DE E+E+A
Sbjct: 604 VNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETA 659



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 108/467 (23%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +I  Y++         ++ + L       D     SVL+ACGQ S    G E+H FV
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQ-LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++  +  D+++ NAL+ MY +C  ++YAR + D+M ++D VS                  
Sbjct: 151 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVS------------------ 192

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                        W+ +I  L +N   +  L+L+REM    VRP+ V + S+ +LF+  +
Sbjct: 193 -------------WSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTA 239

Query: 189 NLKGGKEIHGYAVKNRYDRNIYV--ATAIIDTYAKTGF---------------------- 224
           N++ GK +H Y ++N  + ++ V   TA++D YAK G                       
Sbjct: 240 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 299

Query: 225 ---------LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
                    L  A+ +FD  + R ++IWTA++SAYA      +A +LF++M  +G++P  
Sbjct: 300 IAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 359

Query: 276 VTFTAVLSACAHSGLVD-----------------------------KAWDIFNAMSGQYG 306
           VT  ++LS CA +G +D                             K  DI NA +G+  
Sbjct: 360 VTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDI-NA-AGRLF 417

Query: 307 IQPSVEHYACMVGVLSRARRI----SEATEFVSKMP---VKPSAKVWGALLYGASISGDV 359
           I+ ++    CM   +     +     EA +  ++M    VKP+   +  LL+  S +G V
Sbjct: 418 IE-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLV 476

Query: 360 ELGKFVCD---HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             GK + +   H F + P+   +Y  M +L  +AG  DEA  + + M
Sbjct: 477 TEGKKLFEKMVHTFGLVPQ-IEHYGCMVDLLGRAGLLDEAHEMIKSM 522


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 258/450 (57%), Gaps = 33/450 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RD+VSW +MI GY + GF  E   LF EM     L+ DG+T+V VL +C +  D+  G 
Sbjct: 188 QRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGEN-LQADGMTLVIVLSSCARLGDLRLGR 246

Query: 63  EVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           ++H ++I  S++ +D+++ NAL+ MY KCG  ++AR +  EM  K+ VS           
Sbjct: 247 KLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS----------- 295

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WN++ISGL Q  + +  L + R+MQ  GV+P+ VT+ ++ 
Sbjct: 296 --------------------WNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 335

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  ++   L+ GK +H Y  +N+   + ++  A++D YAK G +  A  VF     + + 
Sbjct: 336 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 395

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            +TA+I   A HG   KA+ LF+EM   GI+PD VTF  VL+AC+H GLV++    F  M
Sbjct: 396 SYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDM 455

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S  Y ++P +EHY CMV +L RA  I+EA EF+  MP++P A V GALL    I G VEL
Sbjct: 456 STIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVEL 515

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ V   + +IEP   G Y++M+N+YS A RW +A ++R+ MKE  L K PG S IE  G
Sbjct: 516 GESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDG 575

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            +  F   D S  K ++IY +L+ ++  ++
Sbjct: 576 VIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 605



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 193/418 (46%), Gaps = 80/418 (19%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           ++++ML+  ++ PD  T+  VL+AC +S  +  G EVH   I+  +  D+++ N L+ MY
Sbjct: 112 VYKQMLSKGIV-PDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMY 170

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           A C  +  AR + D    +D VS++ +I GY+  GF  + + LF                
Sbjct: 171 AVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLF---------------- 214

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYD 206
                           EM    ++ + +T+  + S  +   +L+ G+++H Y ++N   +
Sbjct: 215 ---------------FEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVN 259

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            +++V  A++D Y K G  + A++VF     ++++ W ++IS  A  G   +++ +F +M
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM 319

Query: 267 LNNGIQPDPVTFTAVLSACAHSGL-----------------------------------V 291
              G++PD VT  AVL++CA+ G+                                   +
Sbjct: 320 QRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSI 379

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGA 348
           D+A  +F AM+     +  V  Y  M+  L+   +  +A +  S+MP   ++P    +  
Sbjct: 380 DQACWVFQAMN-----RKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVG 434

Query: 349 LLYGASISGDVELG-KFVCD--HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           +L   S  G VE G K+  D   ++ + P+   +Y  M +L  +AG  +EA+     M
Sbjct: 435 VLTACSHVGLVEEGRKYFEDMSTIYNLRPQ-LEHYGCMVDLLGRAGLINEAEEFIRNM 491



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWNSMI+G +Q G ++E   +FR+M    V +PD VT+V+VL +C     +  
Sbjct: 288 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV-KPDDVTLVAVLNSCANLGVLEL 346

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++  + I+ D +I NAL+ MYAKCGS+D A  +   M+ KD  SY+A+I G  +
Sbjct: 347 GKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAM 406

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG   KA+DLF  M + G+        G++    H  +++
Sbjct: 407 HGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVE 446



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 10/290 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV--REMQASGVRPNAVTISSIFSLF 184
           A+ L   ++ P L  +NA+I GL  +N ++++  LV  ++M + G+ P+  TI  +    
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSN-NDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 135

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    ++ G+E+HG A+K     ++YV+  ++  YA    +  A++VFD    R L+ WT
Sbjct: 136 AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 195

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  Y   G A + V LF EM    +Q D +T   VLS+CA  G +     +   +   
Sbjct: 196 TMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN 255

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LG 362
             +   V     +V +  +    + A +   +MPVK +   W +++ G +  G  +  L 
Sbjct: 256 SNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK-NVVSWNSMISGLAQKGQFKESLY 314

Query: 363 KFVCDHLFEIEPENTGNYIIM---ANL-YSQAGRWDEADRVREQMKESGL 408
            F       ++P++     ++   ANL   + G+W  A   R Q++  G 
Sbjct: 315 MFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF 364


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 255/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R +VSWNSMI GY Q G  E    +F++ML+  V +P  VTV+  L AC    D+  
Sbjct: 192 MDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGV-QPTNVTVMGALHACADLGDLER 250

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  V +  +  D+ + N+LI MY+KC  +D A                        
Sbjct: 251 GKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIA------------------------ 286

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   D+F+ ++   L +WNA+I G  QN      L+   EMQ+  ++P++ T+ S+
Sbjct: 287 -------ADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSV 339

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S  +  K IHG  ++   D+N++V TA++D YAK G +H A+++FD    R +
Sbjct: 340 IPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHV 399

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y  HG    +V LF EM    I+P+ +TF   LSAC+HSGLV++    F +
Sbjct: 400 ITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFES 459

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P+++HY  MV +L RA R+++A +F+ KMP+KP   V+GA+L    I  +V+
Sbjct: 460 MKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVD 519

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     +F++ P++ G ++++AN+Y+ A  W +  +VR  M++SGL K PG S +E  
Sbjct: 520 LGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIG 579

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SF +  TS  +S++IY  LE L+  +R  GYV
Sbjct: 580 NEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYV 615



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 163/349 (46%), Gaps = 34/349 (9%)

Query: 12  MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES 71
           M+ GY++    +   + F  M +  V RP       +L+ CG +SD+  G E+H  VI S
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSV-RPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 72  HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131
               +L+    ++ MYAKC  ++ A  + D M ++D                        
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERD------------------------ 95

Query: 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
                  L  WN +ISG  QN   +  L LV  M   G RP+++TI SI    +    L+
Sbjct: 96  -------LVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLR 148

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            G  +HGY ++  ++  + V+TA++D Y+K G +  A+ +FD    R+++ W ++I  Y 
Sbjct: 149 IGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYV 208

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
             GDA  A+ +F +ML+ G+QP  VT    L ACA  G +++     + +  Q  +   V
Sbjct: 209 QSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDV 267

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
                ++ + S+ +R+  A +    +  K     W A++ G + +G V 
Sbjct: 268 SVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS-WNAMILGYAQNGCVN 315



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 13/255 (5%)

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           ++ G  +++  ++ L     M+   VRP     + +  L    S+LK GKEIHG  + + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
           +  N++  T +++ YAK   ++ A  +FDR   R L+ W  +IS YA +G A  A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVL 321
            M   G +PD +T  ++L A A + L+     I  A+ G   + G +  V     +V + 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLL----RIGMAVHGYVLRAGFESLVNVSTALVDMY 176

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGN 379
           S+   +S A      M  +     W +++ G   SGD E    +   + +  ++P N   
Sbjct: 177 SKCGSVSIARVIFDGMDHRTVVS-WNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNV-- 233

Query: 380 YIIMANLYSQAGRWD 394
             +M  L++ A   D
Sbjct: 234 -TVMGALHACADLGD 247


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 286/526 (54%), Gaps = 71/526 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D+V+WN MI+GY Q GF +E   LF EM+ S  ++PD +T  S L    + + +  
Sbjct: 309 MPKTDLVTWNGMISGYVQNGFMDEASCLFHEMI-SARMKPDSITFSSFLPLLSEGATLRQ 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKC------------------------------ 90
           G E+H ++I + + +D+++ +ALI +Y KC                              
Sbjct: 368 GKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVL 427

Query: 91  -----GSLDYARALLDEMSDKDEVSYSAIIS----------GYMVHGFVEK--------- 126
                 +L+  R LL E    + V+ ++++           G  +HG + K         
Sbjct: 428 NGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYV 487

Query: 127 ---AMDLFQVMKRPGLS-------------TWNAVISGLVQNNRHEAVLDLVREMQASGV 170
               MD++    R  L+              WN++I+   QN + E  +DL R+M  +G 
Sbjct: 488 GSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT 547

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           + + V+IS+  S  ++   L  GKEIH + ++  +  +++  +A+ID Y+K G L  A R
Sbjct: 548 KYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACR 607

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD  + ++ + W +II+AY  HG    +++LF+ ML +GIQPD VTF A++SAC H+G 
Sbjct: 608 VFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQ 667

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VD+    F  M+ + GI   +EHYACMV +  RA R++EA   ++ MP  P A VWG LL
Sbjct: 668 VDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLL 727

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               + G+VEL +    +LF+++P+N+G Y++++N+++ AG+W+   ++R  MKE G+ K
Sbjct: 728 GACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQK 787

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +PG SWI+ +     FVA D S  +S QIYL+L+ L   +R+EGYV
Sbjct: 788 VPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYV 833



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 144/286 (50%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V WN M+ GY + G ++    +F EM  +    P+ VT   VL  C     I F
Sbjct: 208 MPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET-NPNSVTFACVLSVCASEIMINF 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V+ S ++MD  + N L+ MYAKCG L  AR L D M   D             
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTD------------- 313

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L TWN +ISG VQN   +    L  EM ++ ++P+++T SS 
Sbjct: 314 ------------------LVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSF 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             L S  + L+ GKEIH Y ++N    ++++ +A+ID Y K   +  A+++FD+     +
Sbjct: 356 LPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDI 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           ++ TA+IS Y  +G  + A+ +F  +L   ++ + VT  +VL ACA
Sbjct: 416 VVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 32/274 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN MI G++  G ++     + +ML    L PD  T   V++ACG  + +  G  VH+ +
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVALGRVVHDKI 173

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
                ++D+++ ++LI  Y++ G +  AR L D M  KD V                   
Sbjct: 174 QFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGV------------------- 214

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                        WN +++G V+N   +    +  EM+ +   PN+VT + + S+ +   
Sbjct: 215 ------------LWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEI 262

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            +  G ++HG  V +  + +  VA  ++  YAK G L  A+R+FD      L+ W  +IS
Sbjct: 263 MINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMIS 322

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
            Y  +G   +A  LF+EM++  ++PD +TF++ L
Sbjct: 323 GYVQNGFMDEASCLFHEMISARMKPDSITFSSFL 356



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 134/327 (40%), Gaps = 36/327 (11%)

Query: 26  KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85
           K L   + N   L P    +VS+LQ C   S +  G + H  ++ + I  +  +   L+G
Sbjct: 33  KPLQFSIHNDDSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLG 89

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MY  CG      A LD                         A ++F  ++      WN +
Sbjct: 90  MYVLCG------AFLD-------------------------AKNIFYQLRLWCSEPWNWM 118

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I G     + +  L    +M   G  P+  T   +       +++  G+ +H       +
Sbjct: 119 IRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGF 178

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           + +++V +++I  Y++ G +H A+ +FDR   +  ++W  +++ Y  +GD   A  +F E
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M      P+ VTF  VLS CA   +++    + + +    G++        ++ + ++  
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQL-HGLVVSSGLEMDSPVANTLLAMYAKCG 297

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYG 352
            + +A      MP K     W  ++ G
Sbjct: 298 HLFDARRLFDMMP-KTDLVTWNGMISG 323


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 268/471 (56%), Gaps = 38/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++V+W  +IAGY+Q G  +    L   M  + V  P+ +T  S+LQ C   + +  
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA-PNKITFASILQGCTTPAALEH 267

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH ++I+S    +LW+ N+LI MY KCG L+ AR                       
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEAR----------------------- 304

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    LF  +    + TW A+++G  Q   H+  ++L R MQ  G++P+ +T +S+
Sbjct: 305 --------KLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSV 356

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L+ GK IH   V   Y+ ++Y+ +A++  YAK G +  A  VF++   R++
Sbjct: 357 LTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416

Query: 241 IIWTAIISAYAA-HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + WTAII+   A HG   +A+  F++M   GI+PD VTFT+VLSAC H GLV++    F 
Sbjct: 417 VAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFR 476

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   YGI+P VEHY+C V +L RA  + EA   +  MP  P   VWGALL    +  DV
Sbjct: 477 SMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDV 536

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E G+   +++ +++P++ G Y+ ++++Y+ AGR+++A++VR+ M++  + K PG+SWIE 
Sbjct: 537 ERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEV 596

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEES 465
            G +  F  +D S  +SEQIY+ L +L   ++E GYV     +L +V+EE 
Sbjct: 597 DGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQ 647



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 206/437 (47%), Gaps = 78/437 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+IVSW +MI  +  G    E    + E +     +PD VT VS+L A      +  G +
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCY-ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  ++E+ ++++  +  +L+GMYAKCG +  AR + D + +K+ V+++ +I+GY   G 
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+ A++L +                                MQ + V PN +T +SI   
Sbjct: 230 VDVALELLET-------------------------------MQQAEVAPNKITFASILQG 258

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  + L+ GK++H Y +++ Y R ++V  ++I  Y K G L  A+++F     R ++ W
Sbjct: 259 CTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTW 318

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------------ 285
           TA+++ YA  G   +A++LF  M   GI+PD +TFT+VL++C                  
Sbjct: 319 TAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVH 378

Query: 286 -----------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                            A  G +D A  +FN MS +      V   A + G  ++  R  
Sbjct: 379 AGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERN----VVAWTAIITGCCAQHGRCR 434

Query: 329 EATEFVSKMP---VKPSAKVWGALLYGASISGDVELGK--FVCDHL-FEIEPENTGNYII 382
           EA E+  +M    +KP    + ++L   +  G VE G+  F   +L + I+P    +Y  
Sbjct: 435 EALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKP-MVEHYSC 493

Query: 383 MANLYSQAGRWDEADRV 399
             +L  +AG  +EA+ V
Sbjct: 494 FVDLLGRAGHLEEAENV 510



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 179/437 (40%), Gaps = 81/437 (18%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +LQ C +   +  G EVH  +++S I+ + ++ N L+ MYAKCGSL  AR + D + D++
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            VS                               W A+I   V  N++         M+ 
Sbjct: 113 IVS-------------------------------WTAMIEAFVAGNKNLEAFKCYETMKL 141

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           +G +P+ VT  S+ + F++   L+ G+++H   V+   +    V T+++  YAK G +  
Sbjct: 142 AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISK 201

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+ +FDR   ++++ WT +I+ YA  G    A+ L   M    + P+ +TF ++L  C  
Sbjct: 202 ARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTT 261

Query: 288 SGLVDKAWDIFN-AMSGQYG----IQPSVEHYACMVGVLSRARRI--------------- 327
              ++    +    +   YG    +  S+    C  G L  AR++               
Sbjct: 262 PAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAM 321

Query: 328 ----------SEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374
                      EA     +M    +KP    + ++L   S    ++ GK +   L     
Sbjct: 322 VTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVH-AG 380

Query: 375 ENTGNYI--IMANLYSQAGRWDEADRVREQMKE----------SGLAKIPGRSWIECSGG 422
            N   Y+   + ++Y++ G  D+A  V  QM E          +G     GR    C   
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGR----CREA 436

Query: 423 LQSFVAKDTSGDKSEQI 439
           L+ F      G K +++
Sbjct: 437 LEYFDQMKKQGIKPDKV 453


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/469 (36%), Positives = 259/469 (55%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW++MI GY      +E   LF +M+    + P  VT+ SVL+AC + +D+  
Sbjct: 271 MGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H ++I+    +D+ + N L+ MYAKCG +D A    DEM+ KD VS+S        
Sbjct: 331 GRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFS-------- 382

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                  A++SG VQN      L + R MQ SG+ P+  T+  +
Sbjct: 383 -----------------------AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGV 419

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G   HGY +   +  +  +  A+ID Y+K G +  A+ VF+R     +
Sbjct: 420 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 479

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  Y  HG   +A+ LF+++L  G++PD +TF  +LS+C+HSGLV +    F+A
Sbjct: 480 VSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDA 539

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + I P +EH  CMV +L RA  I EA  F+  MP +P  ++W ALL    I  ++E
Sbjct: 540 MSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIE 599

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V   +  + PE+TGN+++++N+YS AGRWD+A  +R   K+ GL KIPG SWIE +
Sbjct: 600 LGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           G + +FV  D S  +  QI   LE LL  M+  GY      +  +VEEE
Sbjct: 660 GIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE 708



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 43/362 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+V+WN+MIAG S  G  ++   L  +M    +  P+  T+V VL   G++  +  
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGH 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + +       + +   L+ MYAKC  L YAR + D M  ++EVS+SA+I GY+ 
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVA 288

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A++LF  M                              +    + P  VT+ S+
Sbjct: 289 SDCMKEALELFDQM------------------------------ILKDAMDPTPVTLGSV 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G+++H Y +K     +I +   ++  YAK G +  A R FD    +  
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVDKAW 295
           + ++AI+S    +G+A+ A+S+F  M  +GI PD  T   VL AC+H      G     +
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I    +    I  +      ++ + S+  +IS A E  ++M  +     W A++ G  I
Sbjct: 439 LIVRGFATDTLICNA------LIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGI 491

Query: 356 SG 357
            G
Sbjct: 492 HG 493



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 33/282 (11%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++ WN +I  Y+  G ++    L+  ML+  V RP+  T   VL+AC     I  G+E+H
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGV-RPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           +      ++ D+++C AL+  YAKCG L                                
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGIL-------------------------------V 161

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A  LF  M    +  WNA+I+G       +  + L+ +MQ  G+ PN+ TI  +     
Sbjct: 162 EAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L  GK +HGY V+  +D  + V T ++D YAK   L  A+++FD    R+ + W+A
Sbjct: 222 EAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 246 IISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACA 286
           +I  Y A     +A+ LF++M L + + P PVT  +VL ACA
Sbjct: 282 MIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 165/401 (41%), Gaps = 80/401 (19%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           + +L+AC QS  +    ++H   +++    D  + + L  +Y  C  +  AR L DE+ +
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                                          P +  WN +I     N   +  +DL   M
Sbjct: 72  -------------------------------PSVILWNQIIRAYAWNGPFDGAIDLYHSM 100

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              GVRPN  T   +    S    ++ G EIH +A     + +++V TA++D YAK G L
Sbjct: 101 LHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGIL 160

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL--- 282
             AQR+F     R ++ W A+I+  + +G    AV L  +M   GI P+  T   VL   
Sbjct: 161 VEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTV 220

Query: 283 ---SACAH--------------------SGLVDK---------AWDIFNAMSGQYGIQPS 310
               A  H                    +GL+D          A  IF+ M    G++  
Sbjct: 221 GEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVM----GVRNE 276

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVK----PSAKVWGALLYGASISGDVELGKFVC 366
           V  ++ M+G    +  + EA E   +M +K    P+    G++L   +   D+  G+ + 
Sbjct: 277 VS-WSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKL- 334

Query: 367 DHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMK 404
            H + I+  +  + ++   + ++Y++ G  D+A R  ++M 
Sbjct: 335 -HCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN 374


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 258/462 (55%), Gaps = 14/462 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V WN+MI+GY   G   E   LFR M+   V   D  T  SVL AC  +     G 
Sbjct: 257 KFDVV-WNAMISGYVHSGMVVEAFELFRRMVLERVPL-DEFTFTSVLSACANAGFFAHGK 314

Query: 63  EVH--------NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
            VH        NFV E+ + ++    NAL+ +Y+KCG++  AR + D M  KD VS++ I
Sbjct: 315 SVHGQITRLQPNFVPEAALPVN----NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTI 370

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           +SGY+    ++KA+++F+ M      +W  ++SG V     E  L L   M+A  V+P  
Sbjct: 371 LSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCD 430

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T +   S      +LK GK++HG+ V+  ++ +     A+I  YA+ G +  A  +F  
Sbjct: 431 YTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLV 490

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
                 + W A+ISA   HG   +A+ LF+ M+  GI PD ++F  VL+AC HSGLVD+ 
Sbjct: 491 MPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEG 550

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           +  F +M   +GI P  +HY  ++ +L RA RI EA + +  MP +P+  +W A+L G  
Sbjct: 551 FQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCR 610

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
            SGD+ELG    D LF++ P++ G YI+++N YS AGRW +A RVR+ M++ G+ K PG 
Sbjct: 611 TSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 670

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           SWIE    +  FV  DT   ++ ++Y  LE +   MR+ GYV
Sbjct: 671 SWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYV 712



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 14/323 (4%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF- 60
           ++RD V  N++I+ Y++        A+FR +L S  LRPD  +  ++L A G   +I   
Sbjct: 117 ARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVR 176

Query: 61  -GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY---ARALLDEMSDKDEVSYSAIIS 116
              ++   V++S     L + NAL+ +Y KC +L+    AR +LDEM DKD ++++ ++ 
Sbjct: 177 HCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVV 236

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G V  A  +F+ +       WNA+ISG V +       +L R M    V  +  T
Sbjct: 237 GYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFT 296

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            +S+ S  ++      GK +HG   + +     +  + V  A++  Y+K G +  A+R+F
Sbjct: 297 FTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIF 356

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D  K + ++ W  I+S Y       KAV +F EM       + +++  ++S   H G  +
Sbjct: 357 DNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFSE 412

Query: 293 KAWDIFNAMSGQYGIQPSVEHYA 315
            A  +FN M  +  ++P    YA
Sbjct: 413 DALKLFNRMRAE-DVKPCDYTYA 434



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 32/170 (18%)

Query: 1   MSKRDIVSWNS-------------------------------MIAGYSQGGFYEECKALF 29
           M  +D+VSWN+                               M++GY  GGF E+   LF
Sbjct: 359 MKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLF 418

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
             M    V +P   T    + ACG+   +  G ++H  +++   +      NALI MYA+
Sbjct: 419 NRMRAEDV-KPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYAR 477

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           CG++  A  +   M + D VS++A+IS    HG   +A++LF  M   G+
Sbjct: 478 CGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGI 527


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 264/455 (58%), Gaps = 1/455 (0%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
            K +   WNS +   ++G    +   LF  +    V  PD  T  SVL+AC    D+  G
Sbjct: 89  QKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSVLRACLNLLDLSNG 147

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H  V +   + +L++ N ++ +YA CG +  AR L ++M  +D V+++ +I+  +  
Sbjct: 148 RILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQ 207

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  E A DLF  M    + +W ++I+G VQ  + +  + L  +M+ +GV+ N VT+ ++ 
Sbjct: 208 GDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL 267

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +    L  G  IH Y+ ++ + RN+ ++  +ID Y K G L  A +VF+  + R+++
Sbjct: 268 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W+A+I   A HG A +A+ LF++M   GI+P+ VTF  +L AC+H GL+ +    F +M
Sbjct: 328 SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 387

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  YGI P +EHY CMV +LSRA  + EA EF+  MP+KP+  VWGALL    +  +VE+
Sbjct: 388 TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEM 447

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    HL E++P N G Y++++N+Y++AGRW++  RVR+ MK+  + K PG S I   G
Sbjct: 448 AEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDG 507

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FVA + S   +EQI+   E LL  MR +GYV
Sbjct: 508 VVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYV 542



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 40/287 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SW SMIAGY Q G  +E   LF +M  + V + + VTVV+VL AC     +  
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV-KCNEVTVVAVLAACADLGALDL 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +H +      K ++ I N LI MY KCG L+ A  + +EM ++  VS+SA+I G  +
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E+A+ LF                                +M   G+ PN VT   +
Sbjct: 339 HGRAEEALRLFS-------------------------------DMSQVGIEPNGVTFIGL 367

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQR-VFDRFKGR 238
               SH   +  G+       ++      I     ++D  ++ G LH A   + +     
Sbjct: 368 LHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKP 427

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT--FTAVLS 283
           + ++W A++ A   H    K V +  E + + ++ DP+   +  VLS
Sbjct: 428 NGVVWGALLGACRVH----KNVEMAEEAIKHLLELDPLNDGYYVVLS 470


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 264/455 (58%), Gaps = 1/455 (0%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
            K +   WNS +   ++G    +   LF  +    V  PD  T  SVL+AC    D+  G
Sbjct: 89  QKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSVLRACLNLLDLSNG 147

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H  V +   + +L++ N ++ +YA CG +  AR L ++M  +D V+++ +I+  +  
Sbjct: 148 RILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQ 207

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  E A DLF  M    + +W ++I+G VQ  + +  + L  +M+ +GV+ N VT+ ++ 
Sbjct: 208 GDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL 267

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +    L  G  IH Y+ ++ + RN+ ++  +ID Y K G L  A +VF+  + R+++
Sbjct: 268 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W+A+I   A HG A +A+ LF++M   GI+P+ VTF  +L AC+H GL+ +    F +M
Sbjct: 328 SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 387

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  YGI P +EHY CMV +LSRA  + EA EF+  MP+KP+  VWGALL    +  +VE+
Sbjct: 388 TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEM 447

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    HL E++P N G Y++++N+Y++AGRW++  RVR+ MK+  + K PG S I   G
Sbjct: 448 AEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDG 507

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FVA + S   +EQI+   E LL  MR +GYV
Sbjct: 508 VVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYV 542



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 40/287 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SW SMIAGY Q G  +E   LF +M  + V + + VTVV+VL AC     +  
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV-KCNEVTVVAVLAACADLGALDL 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +H +      K ++ I N LI MY KCG L+ A  + +EM ++  VS+SA+I G  +
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E+A+ LF                                +M   G+ PN VT   +
Sbjct: 339 HGRAEEALRLFS-------------------------------DMSQVGIEPNGVTFIGL 367

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQR-VFDRFKGR 238
               SH   +  G+       ++      I     ++D  ++ G LH A   + +     
Sbjct: 368 LHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKP 427

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT--FTAVLS 283
           + ++W A++ A   H    K V +  E + + ++ DP+   +  VLS
Sbjct: 428 NGVVWGALLGACRVH----KNVEMAEEAIKHLLELDPLNDGYYVVLS 470



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 116/267 (43%), Gaps = 35/267 (13%)

Query: 127 AMDLFQVM--KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           A  +F+ +  ++P    WN+ +  L + +     + L   ++   V P+  T SS+    
Sbjct: 79  AQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL------------------- 225
            +  +L  G+ +HG   K  +  N+Y+   I+  YA  G +                   
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198

Query: 226 ------------HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
                        GA  +F R   R++  WT++I+ Y   G A +A+ LF +M   G++ 
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC 258

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           + VT  AVL+ACA  G +D    I +  S ++G + +V     ++ +  +   + EA + 
Sbjct: 259 NEVTVVAVLAACADLGALDLGMRI-HEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKV 317

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVE 360
             +M  + +   W A++ G ++ G  E
Sbjct: 318 FEEMEER-TVVSWSAMIGGLAMHGRAE 343



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 12/247 (4%)

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q   V+P +     I  L  +F++    +++H   +K     +I   T +    A T   
Sbjct: 18  QIHHVKPQSSETLKI-DLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSF 76

Query: 226 HGAQRVFDRFKGRS--LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           H AQ++F+  + +     +W + + A A       A+ LF  +    + PD  T ++VL 
Sbjct: 77  HYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLR 136

Query: 284 ACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
           AC +  L+D +   I + +  + G + ++     +V + +    + EA     KMP +  
Sbjct: 137 ACLN--LLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQR-D 193

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVRE 401
              W  ++      GD E G +    LF   PE N  ++  M   Y Q G+  EA  +  
Sbjct: 194 VVTWNIMIAQLIKQGDHE-GAY---DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 402 QMKESGL 408
           +M+E+G+
Sbjct: 250 KMEEAGV 256


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 257/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+++ G ++ G + E     R+M      RPD  T+ +VL    + +D+  
Sbjct: 130 MIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREG-FRPDSFTLSTVLPIFAECADVKR 188

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+EVH F   +    D+++ ++LI MYA C   DY+  + D +  +D +           
Sbjct: 189 GLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHI----------- 237

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++G  QN   E  L + R M  +GVRP  VT SS+
Sbjct: 238 --------------------LWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSL 277

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +  + ++L+ GK++H Y +   ++ N+++++++ID Y K G +  A  +FD+     +
Sbjct: 278 IPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDV 337

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  YA HG A +A+ LF  M     +P+ +TF AVL+AC+H+GLVDK W  F +
Sbjct: 338 VSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKS 397

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI P++EH+A +   L RA  + EA  F+SKM +KP+A VW  LL    +  +  
Sbjct: 398 MSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTM 457

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   + E+EP + G++++++N+YS +GRW+EA  +RE M++ G+ K P  SWIE  
Sbjct: 458 LAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVK 517

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             L  FVA D S    ++I   L      M  EG+V     +  ++EEE
Sbjct: 518 SKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEE 566



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 159/357 (44%), Gaps = 29/357 (8%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNF 67
           W   I   +  G + +  +LF  M  S   R     ++ + L++C        G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 68  VIESHIKMDLWICNALIGMYAK--CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            I S    D +  NAL+ +Y K  C  LD     + ++                     E
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTA--------------FE 121

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
               +F  M    + +WN ++ G  +  RH   L  VR+M   G RP++ T+S++  +F+
Sbjct: 122 SVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFA 181

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             +++K G E+HG+A +N +D +++V +++ID YA       + +VFD    R  I+W +
Sbjct: 182 ECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNS 241

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVDKAWDIFNA 300
           +++  A +G   +A+ +F  ML  G++P PVTF++++  C +      G    A+ I   
Sbjct: 242 LLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGG 301

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                 I  S+    C  G +S A  I +      KM   P    W A++ G ++ G
Sbjct: 302 FEDNVFISSSLIDMYCKCGEISIAHCIFD------KMS-SPDVVSWTAMIMGYALHG 351



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 4/153 (2%)

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           AI+D    +      ++VFD    R ++ W  ++   A  G   +A+    +M   G +P
Sbjct: 109 AIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRP 168

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D  T + VL   A    V +  ++ +  + + G    V   + ++ + +   R   + + 
Sbjct: 169 DSFTLSTVLPIFAECADVKRGLEV-HGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKV 227

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVE--LGKF 364
              +PV+    +W +LL G + +G VE  LG F
Sbjct: 228 FDNLPVRDHI-LWNSLLAGCAQNGSVEEALGIF 259


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 267/461 (57%), Gaps = 2/461 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+M+  ++Q G+++E    + E     + + +G +   VL  C +  ++  
Sbjct: 152 MPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGI-QCNGFSFAGVLTVCVKLKEVGL 210

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH  ++ +    ++ + ++++  Y KCG +  AR L DEMS +D ++++ ++SGY  
Sbjct: 211 TRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAK 270

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++ A +LF  M      +W A+ISG  +N      L+L  +M    VRP+  T SS 
Sbjct: 271 WGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSC 330

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-S 239
               +  ++LK GK+IH Y ++  +  N  V +A+ID Y+K G L   ++VFD    +  
Sbjct: 331 LCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLD 390

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++W  IISA A HG   +A+ + ++M+ +G +PD +TF  +L+AC+HSGLV +  + F 
Sbjct: 391 VVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFE 450

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +MS  YGI PS EHYAC++ +L RA    E  + + KMP KP  +VW ALL    I G +
Sbjct: 451 SMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHI 510

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+   + L E+EP+++  Y++++++Y+  GRW+   +VR+ M E  + K    SW+E 
Sbjct: 511 ELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEI 570

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460
              + SF   D+S    EQIY +LE+L G M E+  + + +
Sbjct: 571 ENKVHSFSVSDSSHPLKEQIYSVLEQLAGQMEEDASLFIAQ 611



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 186/374 (49%), Gaps = 11/374 (2%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYA 96
           LR D  T+ S+LQ C  S  +  G  VH  +  + +K    ++ N LI MYAKCG    A
Sbjct: 55  LRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           R + D+MS ++  S++ ++SGY   G ++ A  LF  M    + +WN ++    Q    +
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWD 174

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             L    E +  G++ N  + + + ++      +   +++HG  +   +  N+ ++++++
Sbjct: 175 EALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVL 234

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           D Y K G +  A+++FD    R ++ WT ++S YA  GD   A  LF EM     + +PV
Sbjct: 235 DAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEM----PEKNPV 290

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA---CMVGVLSRARRISEATEF 333
           ++TA++S  A +G+  KA ++F  M   + ++P    ++   C    ++  +   +   +
Sbjct: 291 SWTALISGYARNGMGHKALELFTKMM-LFHVRPDQFTFSSCLCACASIASLKHGKQIHAY 349

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           + ++  +P+  V  AL+   S  G + +G+ V D +         N II A   +Q G  
Sbjct: 350 LLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISA--LAQHGCG 407

Query: 394 DEADRVREQMKESG 407
           +EA ++ + M  SG
Sbjct: 408 EEAIQMLDDMVRSG 421



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 12/196 (6%)

Query: 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK 194
           +RP L    A++    +N  +EAV  L   +   G+R ++ T++S+    +    L+ GK
Sbjct: 23  RRPCLV--EAIVKLCKKNKLNEAVSSL-ENLARRGLRLDSRTLASLLQHCADSRALREGK 79

Query: 195 EIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
            +H +       R   +++  +I+ YAK G    A++VFD+   R+L  W  ++S YA  
Sbjct: 80  RVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
           G    A  LF++M     + D V++  ++ A A  G  D+A   ++    Q GIQ +   
Sbjct: 140 GMIKPARKLFDKM----PEKDVVSWNTMVIAHAQCGYWDEALRFYSEFR-QLGIQCNGFS 194

Query: 314 YACMVGVLSRARRISE 329
           +A   GVL+   ++ E
Sbjct: 195 FA---GVLTVCVKLKE 207


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 267/460 (58%), Gaps = 8/460 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNS+I  + Q G   E   +F+ ML S V  PD VT+ SV+ AC   S I  
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV-EPDEVTLASVISACASLSAIKV 271

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G EVH  V+++  ++ D+ + NA + MYAKC  +  AR + D M  ++ ++ +++ISGY 
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +    + A  +F  M    + +WNA+I+G  QN  +E  L L   ++   V P   + ++
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           I    +  + L  G + H + +K+ +      + +I+V  ++ID Y K G +     VF 
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +   R  + W A+I  +A +G  ++A+ LF EML +G +PD +T   VLSAC H+G V++
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEE 511

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F++M+  +G+ P  +HY CMV +L RA  + EA   + +MP++P + +WG+LL   
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAAC 571

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  ++ LGK+V + L E+EP N+G Y++++N+Y++ G+W++   VR+ M++ G+ K PG
Sbjct: 572 KVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPG 631

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
            SWI+  G    F+ KD S  + +QI+ +L+ L+  MR E
Sbjct: 632 CSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPE 671



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 41  DGVTVVSVLQACGQSS-DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           D      +L +C +S    ++   VH  VI+S    +++I N LI  Y+KCGSL+  R +
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+M  ++  +++++++G    GF+++A  LF+ M      TWN+++SG  Q++R E  L
Sbjct: 78  FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
                M   G   N  + +S+ S  S  +++  G ++H    K+ +  ++Y+ +A++D Y
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           +K G ++ AQRVFD    R+++ W ++I+ +  +G A +A+ +F  ML + ++PD VT  
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           +V+SACA    +    ++   +     ++  +      V + ++  RI EA      MP+
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317

Query: 340 K 340
           +
Sbjct: 318 R 318



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 157/318 (49%), Gaps = 64/318 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD  +WNSM++G++Q    EE    F  M++      +  +  SVL AC   +D+  
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYF-AMMHKEGFVLNEYSFASVLSACSGLNDMNK 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH+ + +S    D++I +AL+ MY+KCG+++ A+ + DEM D++ VS++++I+ +  
Sbjct: 171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQ 230

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+D+FQ+M                                 S V P+ VT++S+
Sbjct: 231 NGPAVEALDVFQMMLE-------------------------------SRVEPDEVTLASV 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFD------ 233
            S  +  S +K G+E+HG  VKN   RN I ++ A +D YAK   +  A+ +FD      
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319

Query: 234 -------------------------RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                                    +   R+++ W A+I+ Y  +G+  +A+SLF  +  
Sbjct: 320 VIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379

Query: 269 NGIQPDPVTFTAVLSACA 286
             + P   +F  +L ACA
Sbjct: 380 ESVCPTHYSFANILKACA 397


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 263/468 (56%), Gaps = 36/468 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++ +VSWNSM+ GY Q G  E+  A+F +ML   +  P GVT++  L AC    D+  
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI-DPTGVTIMEALHACADLGDLER 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH FV + ++  D+ + N+LI MY+KC  +D A  + + ++ +  VS          
Sbjct: 368 GKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS---------- 417

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN R    L+   EM++ G++P++ T+ S+
Sbjct: 418 ---------------------WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSV 456

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S  +  K IHG  +++  D+NI+V TA++D Y+K G +H A+++FD    R +
Sbjct: 457 IPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHV 516

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y  HG    A+ LF++M    ++P+ +T+ +V+SAC+HSGLVD+    F +
Sbjct: 517 ITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKS 576

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++PS++HY  MV +L RA RI EA +F+  MP+ P   V+GA      I  ++E
Sbjct: 577 MKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIE 636

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+     LFE+ P+  G ++++AN+Y+   +W +   VR+ M++ GL K PG S +E  
Sbjct: 637 VGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELR 696

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV----LLDEVEEE 464
             + SF +  T+  +S++IY  LE L+  ++  GYV    L+ +VE++
Sbjct: 697 NEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDD 744



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 172/351 (49%), Gaps = 34/351 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +++M+ GY++    E   A    M    V +P       +L+ CG ++D+  G E+H  +
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDV-KPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I +    +++    ++ MYAKC  +D A  + D M ++D VS++ II+G+  +GF +KA 
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA- 232

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                                         L+LV  MQ  G RP+++T+ ++    +   
Sbjct: 233 ------------------------------LELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  GK IHGYA++  + + + ++TA+ D Y+K G +  A+ +FD    ++++ W +++ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            Y  +G+  KA+++F +ML  GI P  VT    L ACA  G +++     +    Q  + 
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLG 381

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             +     ++ + S+ +R+  A++  + +  +     W A++ G + +G V
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS-WNAMILGYAQNGRV 431



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 195/412 (47%), Gaps = 47/412 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN++IAG+SQ GF ++   L   M +    RPD +T+V+VL A      ++ 
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG-QRPDSITLVTVLPAAADVGLLMV 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + I +     + I  AL  MY+KCGS++ AR + D M  K  VS+++++ GY+ 
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  EKA+ +F+                               +M   G+ P  VTI   
Sbjct: 327 NGEPEKAIAVFE-------------------------------KMLEEGIDPTGVTIMEA 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+ GK +H +  +     +I V  ++I  Y+K   +  A  +F+   GR+ 
Sbjct: 356 LHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFN 299
           + W A+I  YA +G  S+A++ F+EM + G++PD  T  +V+ A A   +   A W   +
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW--IH 473

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +  +  +  ++     +V + S+   I  A +    M        W A++ G    G  
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHG-- 530

Query: 360 ELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            LG+   D LF+      +EP N   Y+ + +  S +G  DE  R  + MK+
Sbjct: 531 -LGRAALD-LFDKMKKGAVEP-NDITYLSVISACSHSGLVDEGLRHFKSMKQ 579



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 40/325 (12%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + ++S +  +G + +A  +F+ +     + ++ ++ G  +N+  E  L  +  M+   V+
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P     + +  +    ++LK GKEIHG  + N +  N++  T +++ YAK   +  A ++
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR   R L+ W  II+ ++ +G A KA+ L   M + G +PD +T   VL A A  GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 292 ---------------DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS-------- 328
                           K  +I  A++  Y    SVE    +   + +   +S        
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 329 -------EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
                  +A     KM    + P+       L+  +  GD+E GKFV  H F ++  N G
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV--HKF-VDQLNLG 381

Query: 379 NYIIMAN----LYSQAGRWDEADRV 399
           + I + N    +YS+  R D A  +
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDI 406



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 194 KEIH---GYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           KE+H      +KN  Y+ +++  T ++  ++K G ++ A RVF+    +   ++  ++  
Sbjct: 63  KELHQIIPLVIKNGLYNEHLF-QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKG 121

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           YA +     A++    M  + ++P    FT +L  C  +  + +  +I     GQ     
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEI----HGQLITNS 177

Query: 310 SVEHYACMVGVL---SRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +   M GV+   ++ R+I +A +   +MP +     W  ++ G S +G
Sbjct: 178 FAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGFSQNG 227


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 174/525 (33%), Positives = 273/525 (52%), Gaps = 71/525 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   ++V+WN MIAG+ Q GF +E   LF EM+++ V  PD +T  S L +  +S+ +  
Sbjct: 134 MPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGV-SPDSITFASFLPSVTESASLKQ 192

Query: 61  GMEVHNFVIESHIKM-------------------------------DLWICNALIGMYAK 89
           G E+H +++   I +                               D+ +C A+I  Y  
Sbjct: 193 GKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVL 252

Query: 90  CG----SLDYARALLDEMSDKDEVSY---------------------------------- 111
            G    +L+  R LL+E    + V+                                   
Sbjct: 253 NGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHV 312

Query: 112 -SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
            SAI+  Y   G ++ A  +F+ M       WNA+I+   QN + +  +DL R+M   G+
Sbjct: 313 GSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGL 372

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             + V+IS+  S  ++   L  GK IH + +K  +D  ++  +A+ID Y K G L  A+ 
Sbjct: 373 SYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARC 432

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD  + ++ + W +II+AY +HG    +++LF++ML +GIQPD VTF  +LSAC H+G 
Sbjct: 433 VFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQ 492

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VDK    F  M+ +YGI   +EHYAC+V +  RA R++EA E +  MP  P   VWG LL
Sbjct: 493 VDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLL 552

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               + G+VEL +     L +++PEN+G Y++++N+++ AG+W    ++R  MK+ G+ K
Sbjct: 553 GACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQK 612

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +PG SWIE +     FVA D S  +S QIY +L  LL  +R+EGY
Sbjct: 613 VPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNLLLELRKEGY 657



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 173/357 (48%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V WN M+ G+ + G       +F +M N    +P+ +T  SVL  C   +   F
Sbjct: 33  MPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQT-KPNSITFASVLSICASEALSEF 91

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI      D  + NAL+ MY+K G          ++SD               
Sbjct: 92  GNQLHGLVISCGFHFDPLVANALVAMYSKFG----------QLSD--------------- 126

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A+ LF  M    + TWN +I+G VQN   +    L  EM ++GV P+++T +S 
Sbjct: 127 ------ALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++LK GKEIHGY +++    ++++ +A+ID Y K   +  A ++F +     +
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++ TAIIS Y  +G  + A+ +F  +L   + P+ VT  +VL ACA    ++   ++ +A
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKEL-HA 299

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              ++G+       + ++ + ++  R+  A +   +MP K  A  W A++   S +G
Sbjct: 300 NILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQNG 355



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 125/251 (49%), Gaps = 2/251 (0%)

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           DE   S++I  Y  +G +E A  LF  M       WN +++G V+     + + +  +M+
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
               +PN++T +S+ S+ +  +  + G ++HG  +   +  +  VA A++  Y+K G L 
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A ++F+     +++ W  +I+ +  +G   +A  LF+EM++ G+ PD +TF + L +  
Sbjct: 126 DALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVT 185

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
            S  + +  +I   +  ++GI   V   + ++ +  + R +  A + + K        V 
Sbjct: 186 ESASLKQGKEIHGYIL-RHGIALDVFLKSALIDIYFKCRDVGMACK-IFKQSTNVDIVVC 243

Query: 347 GALLYGASISG 357
            A++ G  ++G
Sbjct: 244 TAIISGYVLNG 254


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 263/451 (58%), Gaps = 4/451 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD VSWN MI+GY +   +E+    FREM      +PD  TVVS L AC    ++  
Sbjct: 304 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 363

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+HN+V    +     I NAL+ MYAKCG L+ AR + DEMS K+ + ++++ISGY+ 
Sbjct: 364 GDEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 422

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A DLF       +  W A+I+G VQ +  +  + L REMQ   V+P+  T+ ++
Sbjct: 423 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTL 482

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IHGY  +NR   ++ V TA+I+ Y+K G +  +  +F   + +  
Sbjct: 483 LTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDT 542

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT+II   A +G  S+A+ LF+EM   G +PD +TF  VLSAC+H GLV++    FN+
Sbjct: 543 ASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNS 602

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
           M   + I+P VEHY C++ +L RA  + EA E + ++P++       ++GALL    I  
Sbjct: 603 MKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHN 662

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +V++G+ +   L  IE  ++  + ++AN+Y+   RW++A +VR +MKE G+ K+PG S I
Sbjct: 663 NVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLI 722

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLG 448
           E  G +  F+  D S  +  +I  +L R+ G
Sbjct: 723 EVDGIVHEFLVGDPSHPEMMEICSMLNRVTG 753



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 198/468 (42%), Gaps = 112/468 (23%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N M+  Y++ G   +   LF++ L    L PDG T   VL+A G   D+  G +V  F+
Sbjct: 211 YNVMVKMYAKRGILRKVLLLFQQ-LREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFI 269

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++ + +D ++ N+LI MY +  +++ A+ L DEM+ +D VS++ +ISGY          
Sbjct: 270 VKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGY---------- 319

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHF 187
                                V+  R E  ++  REMQ  G  +P+  T+ S  S  +  
Sbjct: 320 ---------------------VRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTAL 358

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            NL+ G EIH Y V+        +  A++D YAK G L+ A+ +FD    +++I WT++I
Sbjct: 359 KNLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMI 417

Query: 248 SAYAAHGDASK-------------------------------AVSLFNEMLNNGIQPDPV 276
           S Y   GD  +                               AV+LF EM    ++PD  
Sbjct: 418 SGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKF 477

Query: 277 TFTAVLSACAH-----------------------------------SGLVDKAWDIFNAM 301
           T   +L+ CA                                     G VDK+ +IF  +
Sbjct: 478 TVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL 537

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
             +         +  ++  L+   + SEA    S+M     KP    +  +L   S  G 
Sbjct: 538 EDK-----DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL 592

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           VE G+   + +     IEP+   +Y  + +L  +AG  DEA+ + +++
Sbjct: 593 VEEGRRFFNSMKKVHRIEPK-VEHYGCVIDLLGRAGLLDEAEELIQEI 639



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 142/323 (43%), Gaps = 15/323 (4%)

Query: 90  CGSLDYARALLDEM------SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWN 143
           C S+D  + +  ++       D+D ++           G +  A  +F  ++ P L  +N
Sbjct: 153 CKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYN 212

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            ++    +      VL L ++++  G+ P+  T   +        +++ G+++ G+ VK 
Sbjct: 213 VMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKT 272

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             D + YV  ++ID Y +   +  A+++FD    R  + W  +IS Y        A++ F
Sbjct: 273 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 332

Query: 264 NEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
            EM   G + PD  T  + LSAC     ++   +I N +  + G    +++   ++ + +
Sbjct: 333 REMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYA 390

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYI 381
           +   ++ A     +M +K +   W +++ G    GD+   +     LF+  P  +   + 
Sbjct: 391 KCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDLREAR----DLFDKSPVRDVVLWT 445

Query: 382 IMANLYSQAGRWDEADRVREQMK 404
            M N Y Q   +D+A  +  +M+
Sbjct: 446 AMINGYVQFHHFDDAVALFREMQ 468


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/462 (35%), Positives = 265/462 (57%), Gaps = 14/462 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V WN+MI+GY Q G   +   LFR M++  V   D  T  SVL AC  +   V G 
Sbjct: 261 KFDVV-WNAMISGYVQSGMCADAFELFRRMVSEKVPL-DEFTFTSVLSACANAGFFVHGK 318

Query: 63  EVH--------NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
            VH        NFV E+ + ++    NAL+ +Y+K G +  A+ + D M+ KD VS++ I
Sbjct: 319 SVHGQIIRLQPNFVPEAALPVN----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTI 374

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           +SGY+  G ++KA+++F+VM      +W  ++SG V     E  L L  +M+A  V+P  
Sbjct: 375 LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCD 434

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T +   +       LK G+++H + V+  ++ +     A++  YAK G ++ A+ VF  
Sbjct: 435 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 494

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
                 + W A+ISA   HG   +A+ LF++M+  GI PD ++F  +L+AC H+GLVD+ 
Sbjct: 495 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 554

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           +  F +M   +GI P  +HYA ++ +L R+ RI EA + +  MP +P+  +W A+L G  
Sbjct: 555 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR 614

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
            +GD+E G +  D LF + P++ G YI+++N YS AGRW +A RVR+ M++ G+ K PG 
Sbjct: 615 TNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 674

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           SWIE    +  F+  DT   +++++Y  LE +   MR+ GYV
Sbjct: 675 SWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYV 716



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 201/423 (47%), Gaps = 28/423 (6%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV-- 59
           ++RD V  N+M++ +++        ++F  +L S  LRPD  +  +++ A GQ  ++   
Sbjct: 121 ARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAP 180

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY---ARALLDEMSDKDEVSYSAIIS 116
              ++H  V++S     L + NALI +Y KC + +    AR +LDEM DKD+++++ ++ 
Sbjct: 181 HCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVV 240

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G V  A  +F+ +       WNA+ISG VQ+       +L R M +  V  +  T
Sbjct: 241 GYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFT 300

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            +S+ S  ++      GK +HG  ++ +     +  + V  A++  Y+K G +  A+R+F
Sbjct: 301 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 360

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    + ++ W  I+S Y   G   KAV +F  M       + +++  ++S   H GL +
Sbjct: 361 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSE 416

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMV------GVLSRARRISEATEFVSKMPVKPSAKVW 346
            A  +FN M  +  ++P    YA  +      G L   R++      + +   + S    
Sbjct: 417 DALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQLH---AHLVQCGFEASNSAG 472

Query: 347 GALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            ALL   +  G V   + V    F + P  ++ ++  M +   Q G   EA  + +QM  
Sbjct: 473 NALLTMYAKCGAVNDARLV----FLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVA 528

Query: 406 SGL 408
            G+
Sbjct: 529 EGI 531



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)

Query: 1   MSKRDIVSWNS-------------------------------MIAGYSQGGFYEECKALF 29
           M+ +D+VSWN+                               M++GY  GG  E+   LF
Sbjct: 363 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 422

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            +M    V +P   T    + ACG+   +  G ++H  +++   +      NAL+ MYAK
Sbjct: 423 NQMRAEDV-KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAK 481

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG+++ AR +   M + D VS++A+IS    HG   +A++LF  M   G+         +
Sbjct: 482 CGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTI 541

Query: 150 VQNNRHEAVLD 160
           +    H  ++D
Sbjct: 542 LTACNHAGLVD 552


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 275/469 (58%), Gaps = 6/469 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD+V+WN+MI  Y + G  +E   LF EM +S V+ PD + + +++ ACG++ ++ +
Sbjct: 175 MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRY 233

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +++F+IE+ ++MD  +  AL+ MYA  G +D A     +MS ++    +A++SGY  
Sbjct: 234 NRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSK 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++ A  +F   +   L  W  +IS   +++  +  L +  EM  SG++P+ VT+ S+
Sbjct: 294 AGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSV 353

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S   +   L   K +H Y   N  +  + +  A+I+ YAK G L  A+ VF++   R++
Sbjct: 354 ISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNV 413

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+++I+A+A HG+AS ++SLF +M    ++P+ VTF  VL  C+HSGLV++   IF +
Sbjct: 414 VSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 473

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+ +Y I P +EHY CMV +  RA  + EA E +  MP+ P+  +WG+L+    + G++E
Sbjct: 474 MTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELE 533

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     + ++EP++ G  ++M+N+Y++  RWD    +R  M++  + K  G S I+ +
Sbjct: 534 LGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLN 593

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G    F+  D    +S +IY  L  ++  ++  GYV     +L +VEEE
Sbjct: 594 GKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEE 642



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 214/440 (48%), Gaps = 52/440 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + +NS++   S+ G       LF + +     R D ++   +L+A  + S +  GME+H 
Sbjct: 80  IVFNSLLRDLSRSG-EPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHG 138

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           F  +     D ++   L+ MYA CG ++YAR + DEMS +D V+++ +I  Y   G +++
Sbjct: 139 FAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDE 198

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQ------NNRH-EAVLDLVREMQASGVRPNAVTISS 179
           A  LF+ MK   +     ++  +V       N R+  A+ D + E   + VR +   +++
Sbjct: 199 AFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIE---NDVRMDTHLLTA 255

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + ++++    +    E      +    RN++V+TA++  Y+K G L  A+ +FD+ + + 
Sbjct: 256 LVTMYAGAGCMDMAMEF----FRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKD 311

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-W--- 295
           L+ WT +ISAYA      +A+ +F EM  +GI+PD VT  +V+SAC + G +DKA W   
Sbjct: 312 LVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHR 371

Query: 296 -----------DIFNAMSGQY----GIQPS-----------VEHYACMVGVLSRARRISE 329
                       I NA+   Y    G+  +           V  ++ M+   +     S+
Sbjct: 372 YTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASD 431

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
           +    ++M    V+P+   +  +LYG S SG VE GK +   +   + I P+   +Y  M
Sbjct: 432 SLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPK-IEHYGCM 490

Query: 384 ANLYSQAGRWDEADRVREQM 403
            +L+ +A    EA  V E M
Sbjct: 491 VDLFGRANLLREALEVIESM 510



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 137/283 (48%), Gaps = 6/283 (2%)

Query: 127 AMDLFQ-VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           A++LF  +   P    +N+++  L ++    A +   + ++  G R + ++   I    S
Sbjct: 66  ALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVS 125

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             S L  G E+HG+A K     + +V T ++D YA  G ++ A+ VFD    R ++ W  
Sbjct: 126 KVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNT 185

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  Y   G   +A  LF EM ++ + PD +    ++SAC  +G +     I++ +  + 
Sbjct: 186 MIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLI-EN 244

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            ++        +V + + A  +  A EF  KM V+ +  V  A++ G S +G ++  + +
Sbjct: 245 DVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVR-NLFVSTAMVSGYSKAGRLDDARVI 303

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            D   + E ++   +  M + Y+++    EA RV E+M  SG+
Sbjct: 304 FD---QTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGI 343


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/459 (35%), Positives = 257/459 (55%), Gaps = 45/459 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR +VSWN+MI+G+ Q G  EE  A+F  M+++ V  PD  T+VS L +CG   ++  
Sbjct: 245 MLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARV-EPDSATIVSALPSCGYLKELEL 303

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH  V ++H++  + + NAL+ MY++CG +D A  +  E  +KD ++++++I+GY++
Sbjct: 304 GIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIM 363

Query: 121 HGFVEKAMDLFQVMKRPGLST--------------------------------------- 141
           +G  + A+ L   M+  G+                                         
Sbjct: 364 NGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKR 423

Query: 142 ---WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
              WNA++SGL+ N      + L + M    V  N  T +S+   ++  ++LK    +H 
Sbjct: 424 TVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHS 483

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDA 256
           Y V++ +   I V T +ID Y+K G L  A ++FD    K + +I+W+ +I+ Y  HG  
Sbjct: 484 YLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHG 543

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
             AV LFN+M+++G+QP+ +TFT+VL AC+H GLVD    +F  M   Y   P   HY C
Sbjct: 544 ETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTC 603

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           +V +L RA R+ EA + +  MP + +  +WGALL    I  +VELG+   + LFE+EPE+
Sbjct: 604 VVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPES 663

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
           TGNYI++AN+Y+  GRW +A+ VR  M + GL K P +S
Sbjct: 664 TGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQS 702



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 31/286 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S   +  WN++I  Y   GF+ +   +F  M+ S    PD  T   V++AC   S +  
Sbjct: 143 LSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNV 202

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H   + S    ++++ N+L+ MY  CG +  AR                       
Sbjct: 203 GVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLAR----------------------- 239

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    +F VM +  + +WN +ISG  QN R E  L +   M  + V P++ TI S 
Sbjct: 240 --------QVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSA 291

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                +   L+ G ++H    KN     I V  A++D Y++ G +  A  VF   K + +
Sbjct: 292 LPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDV 351

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           I WT++I+ Y  +G+A  A++L   M  +G+ P+ VT  ++LSACA
Sbjct: 352 ITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACA 397



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS-------GYMVHGFVEKAMDLFQ 132
           C++L+  YA   SL+  + L         +     I         Y   G V  A  LF 
Sbjct: 82  CDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFD 141

Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLK 191
            +  P L  WNA+I   V    H   L +   M  SG   P+  T   +    S  S L 
Sbjct: 142 DLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLN 201

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            G  IHG A+ + +  N++V  +++  Y   G +  A++VF+    RS++ W  +IS + 
Sbjct: 202 VGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWF 261

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            +G   +A+++FN M++  ++PD  T  + L +C +   ++    +   +   + +Q  +
Sbjct: 262 QNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNH-LQEKI 320

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           E    +V + SR   I EA+   ++   K     W +++ G  ++G+ +    +C
Sbjct: 321 EVRNALVDMYSRCGGIDEASLVFAETKEK-DVITWTSMINGYIMNGNAKSALALC 374



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 61/275 (22%)

Query: 182 SLFSHFS---NLKGGKEIHGYAVKN---RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           SL  H++   +L   K +HG+ + +        I++ + +  +YA  G +  A+++FD  
Sbjct: 84  SLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDL 143

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACA-------- 286
              SL +W AII  Y   G    A+ +F+ M+ +G   PD  TF  V+ AC+        
Sbjct: 144 SDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVG 203

Query: 287 ---------------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
                                      + G V  A  +FN M     ++ SV  +  M+ 
Sbjct: 204 VLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM-----LKRSVVSWNTMIS 258

Query: 320 VLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELG----KFVC-DHLFE 371
              +  R  EA    + M    V+P +    + L       ++ELG    K V  +HL E
Sbjct: 259 GWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQE 318

Query: 372 -IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            IE  N      + ++YS+ G  DEA  V  + KE
Sbjct: 319 KIEVRNA-----LVDMYSRCGGIDEASLVFAETKE 348


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 250/455 (54%), Gaps = 34/455 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY Q G +EE    F EM  + VL P+  T+V VL ACG +     G  
Sbjct: 226 KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL-PNKSTMVVVLSACGHTRSGELGKW 284

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           + ++V ++    +L + NALI MY KCG  D AR L D + +KD +S             
Sbjct: 285 IGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS------------- 331

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +I G    + +E  L L   M  S V+PN VT   I   
Sbjct: 332 ------------------WNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHA 373

Query: 184 FSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            +    L  GK +H Y  KN R   N  + T++ID YAK G +  A+RVF     R+L  
Sbjct: 374 CACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS 433

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           W A++S +A HG A +A++LF+EM+N G+ +PD +TF  VLSAC  +GLVD     F +M
Sbjct: 434 WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSM 493

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              YGI P ++HY CM+ +L+RA +  EA   +  M ++P   +WG+LL      G VE 
Sbjct: 494 IQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEF 553

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G++V + LF++EPEN G +++++N+Y+ AGRWD+  R+R ++ + G+ K+PG + IE  G
Sbjct: 554 GEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDG 613

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  F+  D    +   IY +L  +  L+ E G+V
Sbjct: 614 DVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFV 648



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 177/358 (49%), Gaps = 2/358 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K ++  WNS+I GYS          LF  ML   V +P+  T   + ++C ++     G 
Sbjct: 93  KHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGV-QPNSHTFPFLFKSCTKAKATHEGK 151

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H   ++  +  +  +  ++I MYA  G +D+AR + D+ S +D VS++A+I+GY+  G
Sbjct: 152 QLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQG 211

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A  LF  +    + +WNA+ISG VQ+ R E  +    EMQ + V PN  T+  + S
Sbjct: 212 CLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLS 271

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
              H  + + GK I  +   N +  N+ +  A+ID Y K G    A+ +FD  + + +I 
Sbjct: 272 ACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS 331

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  +I  Y+      +A++LF  ML + ++P+ VTF  +L ACA  G +D    +   + 
Sbjct: 332 WNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYID 391

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
                  +   +  ++ + ++   I  A      M  +  A  W A+L G ++ G  E
Sbjct: 392 KNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGFAMHGHAE 448



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 12/181 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D++SWN+MI GYS    YEE  ALF  ML S V +P+ VT + +L AC     +  
Sbjct: 324 IEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNV-KPNDVTFLGILHACACLGALDL 382

Query: 61  GMEVHNFV---IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G  VH ++   + +     LW   +LI MYAKCG ++ A  +   M  ++  S++A++SG
Sbjct: 383 GKWVHAYIDKNLRNSSNASLW--TSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSG 440

Query: 118 YMVHGFVEKAMDLFQVMK-----RPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVR 171
           + +HG  E+A+ LF  M      RP   T+  V+S   Q    +      R M Q  G+ 
Sbjct: 441 FAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGIS 500

Query: 172 P 172
           P
Sbjct: 501 P 501



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++ SWN+M++G++  G  E   ALF EM+N  + RPD +T V VL AC Q+  +  
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G +    +I+ + I   L     +I + A+    + A  L+  M  + D   + +++S  
Sbjct: 486 GHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSAC 545

Query: 119 MVHGFVE----KAMDLFQV 133
             HG VE     A  LFQ+
Sbjct: 546 KAHGRVEFGEYVAERLFQL 564



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 22/245 (8%)

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--KTGFLHGAQRVFD---RF 235
            +L     N+   K+IH   +K   +  ++V + +I   A   +G L  A  +F+   + 
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQH 91

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGL 290
              ++ IW ++I  Y+       ++ LF+ ML  G+QP+  TF  +  +C      H G 
Sbjct: 92  HKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGK 151

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
              A  +  A+     +  SV H    VG +  AR + + +           A  + AL+
Sbjct: 152 QLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSL-------RDAVSFTALI 204

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
            G    G ++  + + D   EI  ++  ++  M + Y Q+GR++EA     +M+E+ +  
Sbjct: 205 TGYVSQGCLDDARRLFD---EIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANV-- 259

Query: 411 IPGRS 415
           +P +S
Sbjct: 260 LPNKS 264


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 250/453 (55%), Gaps = 32/453 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN +I  Y++ G  E    L+R ML    ++PD  T   VL+AC    D+  G EV
Sbjct: 134 NVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREV 193

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V+ ++   D+++C  LI MYAKCG +D A A+ ++ + +D                 
Sbjct: 194 HDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDA---------------- 237

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                          + WN++I+   QN R    L L R M A G+ P   T+ S  S  
Sbjct: 238 ---------------AVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAA 282

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  S L  G+E+HGY  +  +     + T+++D YAK+G++  A  +F++   R LI W 
Sbjct: 283 AVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWN 342

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           A+I  +  HG A  A  LF+ M +   + PD +TF  VLSAC H G+V +A ++F+ M  
Sbjct: 343 AMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVT 402

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y I+P+V+HY C+V VL  + R  EA++ +  M VKP + +WGALL G  I  +VEL +
Sbjct: 403 VYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAE 462

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E+EPE+ GNY++++N+Y+++G+W+EA RVR+ M   GL KI   SWIE  G  
Sbjct: 463 LALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKF 522

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F+  D S  +S+ IY  LERL GL+ + GYV
Sbjct: 523 HGFLVGDASHPRSDDIYEELERLEGLISQTGYV 555



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIIS 248
           ++ G+++H   + +    +  +AT ++D YA  G +  A+RVFD    + ++ +W  +I 
Sbjct: 84  VRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIR 143

Query: 249 AYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACA 286
           AYA  G    A+ L+  ML  G ++PD  T+  VL ACA
Sbjct: 144 AYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACA 182



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 16/210 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD   WNSMIA   Q G   E   L R M    +  P   T+VS + A   +S +  G E
Sbjct: 235 RDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIA-PTIATLVSAISAAAVASALPRGRE 293

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +           +  +L+ MYAK G +  A  L +++  ++ +S++A+I G+ +HG 
Sbjct: 294 LHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGH 353

Query: 124 VEKAMDLFQVMKR-----PGLSTWNAVIS-----GLVQNNRHEAVLDLVREMQASGVRPN 173
            + A +LF  M+      P   T+  V+S     G+VQ  +   V DL+  +    ++P 
Sbjct: 354 ADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKE--VFDLM--VTVYSIKPT 409

Query: 174 AVTISSIFSLFSHFSNLKGGKE-IHGYAVK 202
               + +  +  H    K   + I G  VK
Sbjct: 410 VQHYTCLVDVLGHSGRFKEASDVIKGMLVK 439



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+++SWN+MI G+   G  +    LF  M +   + PD +T V VL AC     +    E
Sbjct: 336 RELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKE 395

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVH 121
           V + ++  + IK  +     L+ +    G    A  ++  M  K D   + A+++G  +H
Sbjct: 396 VFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIH 455

Query: 122 GFVEKA 127
             VE A
Sbjct: 456 KNVELA 461


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 255/457 (55%), Gaps = 33/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR++  WN +I  Y++ G  E    L+R M+   V  PD  T   VL+AC    D+  
Sbjct: 123 MPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGV-EPDNFTYPLVLKACAALLDLET 181

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH  V  +    D+++C  ++ MYAKCG +D ARA+ D ++ +D V           
Sbjct: 182 GREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAV----------- 230

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+   QN R    L L R+M A+G+ P   T+ S 
Sbjct: 231 --------------------VWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSA 270

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L  G+E+HG+  +  +     + T+++D YAK+G++  A+ +F++   R L
Sbjct: 271 VSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + W A+I  Y  HG A +A++LFN+M  +  + PD +TF  VLSAC H G+V++A + F 
Sbjct: 331 VSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFY 390

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y I+P+V+HY C++ VL    R  EA + +  M ++P + +WGALL G  I  +V
Sbjct: 391 LMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNV 450

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+     L E+EPE+ GNY+ ++N+Y+Q+G+W++A RVR+ M   GL KI   SWIE 
Sbjct: 451 ELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIEL 510

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G    F+  D S  +S++IY  LERL GLM + GYV
Sbjct: 511 KGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYV 547



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +SI        +L+ G+++HG  + +    +  ++T ++D YA  G +  A+R+FD    
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           R++ +W  +I AYA  G    AV L+  M+ +G++PD  T+  VL ACA
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACA 174


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/462 (35%), Positives = 265/462 (57%), Gaps = 14/462 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V WN+MI+GY Q G   +   LFR M++  V   D  T  SVL AC  +   V G 
Sbjct: 263 KFDVV-WNAMISGYVQSGMCADAFELFRRMVSEKVPL-DEFTFTSVLSACANAGFFVHGK 320

Query: 63  EVH--------NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
            VH        NFV E+ + ++    NAL+ +Y+K G +  A+ + D M+ KD VS++ I
Sbjct: 321 SVHGQIIRLQPNFVPEAALPVN----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTI 376

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           +SGY+  G ++KA+++F+VM      +W  ++SG V     E  L L  +M+A  V+P  
Sbjct: 377 LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCD 436

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T +   +       LK G+++H + V+  ++ +     A++  YAK G ++ A+ VF  
Sbjct: 437 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 496

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
                 + W A+ISA   HG   +A+ LF++M+  GI PD ++F  +L+AC H+GLVD+ 
Sbjct: 497 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 556

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           +  F +M   +GI P  +HYA ++ +L R+ RI EA + +  MP +P+  +W A+L G  
Sbjct: 557 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR 616

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
            +GD+E G +  D LF + P++ G YI+++N YS AGRW +A RVR+ M++ G+ K PG 
Sbjct: 617 TNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 676

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           SWIE    +  F+  DT   +++++Y  LE +   MR+ GYV
Sbjct: 677 SWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYV 718



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 201/423 (47%), Gaps = 28/423 (6%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV-- 59
           ++RD V  N+M++ +++        ++F  +L S  LRPD  +  +++ A GQ  ++   
Sbjct: 123 ARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAP 182

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY---ARALLDEMSDKDEVSYSAIIS 116
              ++H  V++S     L + NALI +Y KC + +    AR +LDEM DKD+++++ ++ 
Sbjct: 183 HCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVV 242

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G V  A  +F+ +       WNA+ISG VQ+       +L R M +  V  +  T
Sbjct: 243 GYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFT 302

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            +S+ S  ++      GK +HG  ++ +     +  + V  A++  Y+K G +  A+R+F
Sbjct: 303 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 362

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    + ++ W  I+S Y   G   KAV +F  M       + +++  ++S   H GL +
Sbjct: 363 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSE 418

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMV------GVLSRARRISEATEFVSKMPVKPSAKVW 346
            A  +FN M  +  ++P    YA  +      G L   R++      + +   + S    
Sbjct: 419 DALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQLH---AHLVQCGFEASNSAG 474

Query: 347 GALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            ALL   +  G V   + V    F + P  ++ ++  M +   Q G   EA  + +QM  
Sbjct: 475 NALLTMYAKCGAVNDARLV----FLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVA 530

Query: 406 SGL 408
            G+
Sbjct: 531 EGI 533



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)

Query: 1   MSKRDIVSWNS-------------------------------MIAGYSQGGFYEECKALF 29
           M+ +D+VSWN+                               M++GY  GG  E+   LF
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 424

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            +M    V +P   T    + ACG+   +  G ++H  +++   +      NAL+ MYAK
Sbjct: 425 NQMRAEDV-KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAK 483

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG+++ AR +   M + D VS++A+IS    HG   +A++LF  M   G+         +
Sbjct: 484 CGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTI 543

Query: 150 VQNNRHEAVLD 160
           +    H  ++D
Sbjct: 544 LTACNHAGLVD 554


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 267/456 (58%), Gaps = 2/456 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWN+MI  ++ GG  ++   LF+EM    V +P+ +T+VSVL AC +  D+ F
Sbjct: 234 MPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDV-KPNVITMVSVLSACAKKIDLEF 292

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  + +++  +     L + NA++ MY KCG ++ A+ L ++MS+KD VS++ ++ G+  
Sbjct: 293 GRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAK 352

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISS 179
            G  ++A  +F  M     + WNA+IS   QN +    L L  EMQ S   +P+ VT+  
Sbjct: 353 LGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLIC 412

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                +    +  G  IH Y  K+  + N ++AT+++D YAK G L+ A  VF   + + 
Sbjct: 413 ALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKD 472

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + +W+A+I A A +G    A+ LF+ ML   I+P+ VTFT +L AC H+GLV++   +F 
Sbjct: 473 VYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFE 532

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI P ++HY C+V +  RA  + +A  F+ KMP+ P+A VWGALL   S  G+V
Sbjct: 533 QMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNV 592

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    +L E+EP N G +++++N+Y++AG W++   +R+ M++S + K P  S I+ 
Sbjct: 593 ELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDV 652

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +G +  F+  D S   S++IY  L+ +    +  GY
Sbjct: 653 NGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGY 688



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 202/496 (40%), Gaps = 116/496 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + ++  WN++I GY+      +   +F  ML+S    P+  T   + +A  +   +  
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  VI++ +  DL+I N+LI  Y   G+ D A  +   M  KD VS          
Sbjct: 192 GSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVS---------- 241

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+        +  L L +EM+   V+PN +T+ S+
Sbjct: 242 ---------------------WNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSV 280

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L+ G+ I  Y   N +  ++ +  A++D Y K G ++ A+ +F++   + +
Sbjct: 281 LSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDI 340

Query: 241 IIWT-------------------------------AIISAYAAHGDASKAVSLFNEM-LN 268
           + WT                               A+ISAY  +G    A+SLF+EM L+
Sbjct: 341 VSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLS 400

Query: 269 NGIQPDPVTFTAVLSACAHSGLVD-----------------------------------K 293
              +PD VT    L A A  G +D                                   K
Sbjct: 401 KDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNK 460

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALL 350
           A ++F+A+      +  V  ++ M+G L+   +   A +  S M    +KP+A  +  +L
Sbjct: 461 AMEVFHAVE-----RKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNIL 515

Query: 351 YGASISGDVELGKFVCDHLFE-IEP-----ENTGNYIIMANLYSQAGRWDEADRVREQMK 404
              + +G V  G    + LFE +EP         +Y+ + +++ +AG  ++A    E+M 
Sbjct: 516 CACNHAGLVNEG----EQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMP 571

Query: 405 ESGLAKIPGRSWIECS 420
               A + G     CS
Sbjct: 572 IPPTAAVWGALLGACS 587



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 12/309 (3%)

Query: 107 DEVSYSAIISGYMVHGF--VEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVR 163
           D  + S +++ Y +     +  A ++F  + +P L  WN +I G   + +  ++ L  + 
Sbjct: 103 DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLH 162

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            + +    PN  T   +F   S    L  G  +HG  +K     ++++  ++I+ Y  +G
Sbjct: 163 MLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSG 222

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               A RVF    G+ ++ W A+I+A+A  G   KA+ LF EM    ++P+ +T  +VLS
Sbjct: 223 APDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLS 282

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           ACA    ++    I + +    G    +     M+ +  +   I++A +  +KM  K   
Sbjct: 283 ACAKKIDLEFGRWICSYIENN-GFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIV 341

Query: 344 KVWGALLYGASISGDVELGKFVCDH-LFEIEPEN-TGNYIIMANLYSQAGRWDEADRVRE 401
             W  +L      G  +LG +   H +F+  P   T  +  + + Y Q G+   A  +  
Sbjct: 342 S-WTTML-----DGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFH 395

Query: 402 QMKESGLAK 410
           +M+ S  AK
Sbjct: 396 EMQLSKDAK 404



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 119/282 (42%), Gaps = 47/282 (16%)

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--KTGFLH 226
           G + N V  ++I       +N    K+IH + ++     + Y A+ ++  YA      L 
Sbjct: 64  GEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLI 123

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSAC 285
            A+ VF++    +L  W  +I  YA+  D +++  +F  ML++  + P+  TF  +  A 
Sbjct: 124 YAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAA 183

Query: 286 AH----------SGLVDKA---WDIF--NAMSGQYGIQ--PSVEH-------------YA 315
           +            G+V KA    D+F  N++   YG    P + H             + 
Sbjct: 184 SRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWN 243

Query: 316 CMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
            M+   +      +A     +M    VKP+     ++L   +   D+E G+++C ++   
Sbjct: 244 AMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYI--- 300

Query: 373 EPENTG--NYIIMAN----LYSQAGRWDEADRVREQMKESGL 408
             EN G   ++I+ N    +Y + G  ++A  +  +M E  +
Sbjct: 301 --ENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDI 340


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/470 (36%), Positives = 265/470 (56%), Gaps = 7/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSW+++I+ Y Q   YEE   LF+EM N+  +  D V V+SVL AC +   ++ 
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEM-NANGIMVDEVVVLSVLSACSRLLVVIT 307

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  V++  I+  + + NALI MY+ C  +  A+ L  E    D++S++++ISGY+ 
Sbjct: 308 GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVK 367

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +EKA  LF  M      +W+A+ISG  Q +R    L L +EMQ  G +P+   + S+
Sbjct: 368 CGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSV 427

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +H + L  GK IH Y  KN    NI + T +I+ Y K G +  A  VF   + + +
Sbjct: 428 ISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGV 487

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I   A +G   K++  F+EM  +G+ P+ +TF AVL AC H GLVD+    FN+
Sbjct: 488 STWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNS 547

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I P+++HY CMV +L RA  + EA E +  MP+ P    WGALL      GD E
Sbjct: 548 MIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNE 607

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            G+ +   L E+ P++ G  ++++N+Y+  G W +   VR  M++ G+ K PG S IE  
Sbjct: 608 TGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAH 667

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           G +  F+A D +  ++E I  +L+ +   ++ EGY      V LD  EEE
Sbjct: 668 GRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEE 717



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 185/416 (44%), Gaps = 71/416 (17%)

Query: 10  NSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           N+M+ GY Q      CKA+  ++ ML S V   D  T   + Q+C        G  + + 
Sbjct: 95  NTMMKGYMQRN--SPCKAIWVYKFMLESNV-AADNYTYPILFQSCSIRLAEFDGKCIQDH 151

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V++     D++I N LI MYA CG+L  AR + D  S  D VS++++++GY++ G VE+A
Sbjct: 152 VLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEA 211

Query: 128 MD-------------------------------LFQVMKRPGLSTWNAVISGLVQNNRHE 156
            D                               LF  MK+  L +W+A+IS   QN  +E
Sbjct: 212 KDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYE 271

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             L L +EM A+G+  + V + S+ S  S    +  GK +HG  VK   +  + +  A+I
Sbjct: 272 EALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALI 331

Query: 217 DTYA-------------------------------KTGFLHGAQRVFDRFKGRSLIIWTA 245
             Y+                               K G +  A+ +FD    +  + W+A
Sbjct: 332 HMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSA 391

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQ 304
           +IS YA     ++ + LF EM   G +PD     +V+SAC H   +D+  W   +A   +
Sbjct: 392 MISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKW--IHAYIRK 449

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            G++ ++     ++ +  +   + +A E    +  K     W AL+ G +++G V+
Sbjct: 450 NGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEK-GVSTWNALILGLAMNGLVD 504



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 131/347 (37%), Gaps = 69/347 (19%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + ++  +F  ++ P     N ++ G +Q N     + + + M  S V  +  T   +F  
Sbjct: 76  INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF----------- 232
            S       GK I  + +K  +D ++Y+   +I+ YA  G L  A++VF           
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSW 195

Query: 233 --------------------DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN---- 268
                               DR   R++I   ++I  +   G+  +A  LFNEM      
Sbjct: 196 NSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLV 255

Query: 269 ---------------------------NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
                                      NGI  D V   +VLSAC+   LV     + + +
Sbjct: 256 SWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRL-LVVITGKLVHGL 314

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             + GI+  V     ++ + S    +  A +  S+         W +++ G    G++E 
Sbjct: 315 VVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQIS-WNSMISGYVKCGEIEK 373

Query: 362 GKFVCDHLFEIEPENTG-NYIIMANLYSQAGRWDEADRVREQMKESG 407
            +     LF+  P+    ++  M + Y+Q  R+ E   + ++M+  G
Sbjct: 374 AR----ALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEG 416



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/246 (17%), Positives = 106/246 (43%), Gaps = 18/246 (7%)

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           ++P  +T+  + +      N+K   +I    + + + ++ + A+ ++    +  F++  Q
Sbjct: 20  LKP-TLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQ 78

Query: 230 --RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA- 286
             ++F   +  +  I   ++  Y       KA+ ++  ML + +  D  T+  +  +C+ 
Sbjct: 79  SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSI 138

Query: 287 ----HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
                 G   +   +         IQ ++ +   + G LS AR++ + +  +  +     
Sbjct: 139 RLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS---- 194

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402
              W ++L G  + G+VE  K V D + E     + + I+   L+ + G  +EA ++  +
Sbjct: 195 ---WNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIV---LFGKKGNVEEACKLFNE 248

Query: 403 MKESGL 408
           MK+  L
Sbjct: 249 MKQKDL 254


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 255/458 (55%), Gaps = 33/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD VSWNSMIAGY++ G   E   +FREM       PD +++VS+L ACG+  D+  
Sbjct: 183 IPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLEL 242

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E  + ++ +I +ALI MYAKCG L                           
Sbjct: 243 GRWVEGFVVERGMTLNSYIGSALISMYAKCGEL--------------------------- 275

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E A  +F  M    + TWNAVISG  QN   +  + L   M+   V  N +T++++
Sbjct: 276 ----ESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAV 331

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK+I  YA +  +  +I+VATA+ID YAK+G L  AQRVF     ++ 
Sbjct: 332 LSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNE 391

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             W A+ISA AAHG A +A+SLF  M + G   +P+ +TF  +LSAC H+GLVD+ + +F
Sbjct: 392 ASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLF 451

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EHY+CMV +L+RA  + EA + + KMP KP     GALL       +
Sbjct: 452 DMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKN 511

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++G+ V   + E++P N+GNYII + +Y+    W+++ R+R  M++ G+ K PG SWIE
Sbjct: 512 VDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIE 571

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               L  F A D     S  +  I++ L   ++ EGYV
Sbjct: 572 VENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYV 609



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 173/385 (44%), Gaps = 36/385 (9%)

Query: 22  YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81
           Y    +LF  M+ S  L PD  T      +C   + +      H+ + +  +  D    +
Sbjct: 103 YPLALSLFHRMM-SLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAH 161

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           +LI  YA+CG +  AR + DE+  +D VS++++I+GY   G   +A+++F+ M R     
Sbjct: 162 SLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGR----- 216

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                                      G  P+ +++ S+        +L+ G+ + G+ V
Sbjct: 217 -------------------------RDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVV 251

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           +     N Y+ +A+I  YAK G L  A+R+FD    R +I W A+IS YA +G A +A+ 
Sbjct: 252 ERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAIL 311

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           LF+ M  + +  + +T TAVLSACA  G +D    I +  + Q G Q  +     ++ + 
Sbjct: 312 LFHGMKEDCVTANKITLTAVLSACATIGALDLGKQI-DEYASQRGFQHDIFVATALIDMY 370

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
           +++  +  A      MP K  A  W A++   +  G  +    +  H+ +       N I
Sbjct: 371 AKSGSLDNAQRVFKDMPQKNEAS-WNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDI 429

Query: 382 IMANLYS---QAGRWDEADRVREQM 403
               L S    AG  DE  R+ + M
Sbjct: 430 TFVGLLSACVHAGLVDEGYRLFDMM 454



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 11/160 (6%)

Query: 131 FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
           F +M R   +TW+           +   L L   M +  + P+  T    F   ++ ++L
Sbjct: 89  FNIMIRALTTTWH----------NYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASL 138

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
                 H    K     + + A ++I  YA+ G +  A++VFD    R  + W ++I+ Y
Sbjct: 139 SHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGY 198

Query: 251 AAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSG 289
           A  G A +AV +F EM   +G +PD ++  ++L AC   G
Sbjct: 199 AKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELG 238


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 263/451 (58%), Gaps = 4/451 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD VSWN MI+GY +   +E+    FREM      +PD  TVVS L AC    ++  
Sbjct: 258 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 317

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+HN+V    +     I NAL+ MYAKCG L+ AR + DEMS K+ + ++++ISGY+ 
Sbjct: 318 GDEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 376

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A DLF       +  W A+I+G VQ +  +  + L REMQ   ++P+  T+ ++
Sbjct: 377 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTL 436

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IHGY  +NR   ++ V TA+I+ Y+K G +  +  +F   + +  
Sbjct: 437 LTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDT 496

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT+II   A +G  S+A+ LF+EM   G +PD +TF  VLSAC+H GLV++    FN+
Sbjct: 497 ASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNS 556

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV---WGALLYGASISG 357
           M   + I+P VEHY C++ +L RA  + EA E + ++P++    V   +GALL    I  
Sbjct: 557 MKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHN 616

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +V++G+ +   L  IE  ++  + ++AN+Y+   RW++A +VR +MKE G+ K+PG S I
Sbjct: 617 NVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLI 676

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLG 448
           E  G +  F+  D S  +  +I  +L R+ G
Sbjct: 677 EVDGIVHEFLVGDPSHPEMIEICSMLNRVTG 707



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 198/468 (42%), Gaps = 112/468 (23%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N M+  Y++ G   +   LF++ L    L PDG T   VL+A G   D+  G +V  F+
Sbjct: 165 YNVMVKIYAKRGILRKVLLLFQQ-LREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFI 223

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++ + +D ++ N+LI MY +  +++ A+ L DEM+ +D VS++ +ISGY          
Sbjct: 224 VKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGY---------- 273

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHF 187
                                V+  R E  ++  REMQ  G  +P+  T+ S  S  +  
Sbjct: 274 ---------------------VRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTAL 312

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            NL+ G EIH Y V+        +  A++D YAK G L+ A+ +FD    +++I WT++I
Sbjct: 313 KNLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMI 371

Query: 248 SAYAAHGDASK-------------------------------AVSLFNEMLNNGIQPDPV 276
           S Y   GD  +                               AV+LF EM    I+PD  
Sbjct: 372 SGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKF 431

Query: 277 TFTAVLSACAH-----------------------------------SGLVDKAWDIFNAM 301
           T   +L+ CA                                     G VDK+ +IF  +
Sbjct: 432 TVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL 491

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
             +         +  ++  L+   + SEA    S+M     KP    +  +L   S  G 
Sbjct: 492 EDK-----DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL 546

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           VE G+   + +     IEP+   +Y  + +L  +AG  DEA+ + +++
Sbjct: 547 VEEGRRFFNSMKKVHRIEPK-VEHYGCVIDLLGRAGLLDEAEELIQEI 593



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 142/323 (43%), Gaps = 15/323 (4%)

Query: 90  CGSLDYARALLDEM------SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWN 143
           C S+D  + +  ++       D+D ++           G +  A  +F  ++ P L  +N
Sbjct: 107 CKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYN 166

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            ++    +      VL L ++++  G+ P+  T   +        +++ G+++ G+ VK 
Sbjct: 167 VMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKT 226

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             D + YV  ++ID Y +   +  A+++FD    R  + W  +IS Y        A++ F
Sbjct: 227 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 286

Query: 264 NEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
            EM   G + PD  T  + LSAC     ++   +I N +  + G    +++   ++ + +
Sbjct: 287 REMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYA 344

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYI 381
           +   ++ A     +M +K +   W +++ G    GD+   +     LF+  P  +   + 
Sbjct: 345 KCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDLREAR----DLFDKSPVRDVVLWT 399

Query: 382 IMANLYSQAGRWDEADRVREQMK 404
            M N Y Q   +D+A  +  +M+
Sbjct: 400 AMINGYVQFHHFDDAVALFREMQ 422


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/437 (38%), Positives = 254/437 (58%), Gaps = 10/437 (2%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D  T+  VL++C   S +  G  VH   +   ++ D ++  +LI MY KCG +  AR L 
Sbjct: 180 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 239

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D+M  +D  S++A+I+GYM  G +  A DLF+ M+   + +W A+ISG  QN   E  L 
Sbjct: 240 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 299

Query: 161 LVREMQASG--VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           L  EM   G  ++PN VTI S+    +  + L+ G+ IH +A       N  V TA+   
Sbjct: 300 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 359

Query: 219 YAKTGFLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           YAK   L  A+  FD     G++LI W  +I+AYA+HG   +AVS+F  ML  G+QPD V
Sbjct: 360 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAV 419

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           TF  +LS C+HSGL+D   + FN M   + ++P VEHYAC+V +L RA R+ EA E +S+
Sbjct: 420 TFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQ 479

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           MP++    VWGALL       ++E+ +     LF +EP+N+GNY++++NLY++AG W+E 
Sbjct: 480 MPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEV 539

Query: 397 DRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE------RLLGLM 450
            ++R  +K  G+ K PG SWIE +G    F+  D S  ++++IY  LE      ++ G +
Sbjct: 540 KKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYI 599

Query: 451 REEGYVLLDEVEEESAY 467
            +  +VL D  EEE  Y
Sbjct: 600 PDTSFVLHDISEEEKEY 616



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R+IVSW +MI+GY+Q GF E+   LF EML +   ++P+ VT+VSVL AC QS+ + 
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIISG 117
            G  +H+F     + ++  +  AL GMYAKC SL  AR   D ++   K+ ++++ +I+ 
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           Y  HG   +A+ +F+ M R G+        GL+    H  ++D
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLID 435



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 176/449 (39%), Gaps = 108/449 (24%)

Query: 31  EMLNSPVLR--PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
            +L  P+L+  P   +   + Q   + + I  G + H  ++   ++ + ++   ++ MYA
Sbjct: 64  RILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYA 123

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
             G LD A  + D + +   + Y++II  Y  HG         +   R            
Sbjct: 124 SSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYAR------------ 171

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
                           M   G+  +  T+  +    +  S +  G+ +HG  ++   + +
Sbjct: 172 ----------------MHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGD 215

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFD-------------------------------RFKG 237
            YV  ++ID Y K G +  A+++FD                               R + 
Sbjct: 216 FYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEH 275

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAW 295
           R+++ WTA+IS Y  +G A +A+ LF+EML +G  ++P+ VT  +VL ACA S  +++  
Sbjct: 276 RNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGR 335

Query: 296 DIFN---------------AMSGQYGIQPS-VEHYACMVGVLSRARRI------------ 327
            I +               A++G Y    S VE   C   +    + +            
Sbjct: 336 RIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYAS 395

Query: 328 ----SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDH------LFEIEP 374
                EA      M    V+P A  +  LL G S SG ++ G    +H      +  +EP
Sbjct: 396 HGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG---LNHFNDMGTIHSVEP 452

Query: 375 ENTGNYIIMANLYSQAGRWDEADRVREQM 403
               +Y  + +L  +AGR  EA  +  QM
Sbjct: 453 R-VEHYACVVDLLGRAGRLVEAKELISQM 480



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  + + IF   +  + +K G++ H   V +    N ++A  ++  YA +G L  A  V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 232 FDRFKGRSLIIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           FDR    S +++ +II AY  HG        +  +  M   G+  D  T   VL +CA  
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
             V     + +    + G++      A ++ +  +   I +A +   KM V+  A  W A
Sbjct: 195 SRVCMGRCV-HGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMAS-WNA 252

Query: 349 LLYGASISGDVELGKFVCDHLFE-IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           L+ G    G++     V + LFE +E  N  ++  M + Y+Q G  ++A  + ++M + G
Sbjct: 253 LIAGYMKEGEIG----VAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDG 308

Query: 408 LAKIPGRSWI 417
               P  +W+
Sbjct: 309 SEMKP--NWV 316


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 259/477 (54%), Gaps = 41/477 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D+VSW +MIAGY+Q   + E   LF+EM N  + R D +   S + AC     +  
Sbjct: 476 LREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGI-RSDNIGFSSAISACAGIQALNQ 534

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H     S    DL I NAL+ +YA+CG    A    +++  KD +S          
Sbjct: 535 GQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS---------- 584

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  Q+   E  L +  +M  +GV  N  T  S 
Sbjct: 585 ---------------------WNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSA 623

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ +N+K GK+IH   +K  YD     +  +I  Y+K G +  A+R F     +++
Sbjct: 624 VSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNV 683

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ Y+ HG  S+AVSLF EM   G+ P+ VTF  VLSAC+H GLV++    F +
Sbjct: 684 VSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRS 743

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS ++G+ P  EHY C+V +L RA  +  A EF+ +MP++P A +W  LL   ++  ++E
Sbjct: 744 MSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIE 803

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EPE++  Y++++N+Y+ +G+WD  DR R+ MK+ G+ K PGRSWIE  
Sbjct: 804 IGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVK 863

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE----SAYV 468
             + +F   D     +EQIY  ++ L     E GYV     LL++VE+E    +AY+
Sbjct: 864 NSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYI 920



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 34/360 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +S+NS+I+G +Q GF +    LF +M     ++PD VTV S+L AC        
Sbjct: 274 MHRRDRISYNSLISGLAQRGFSDRALQLFEKM-QLDCMKPDCVTVASLLSACASVGAGYK 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H++VI+  +  DL I  +L+ +Y KC                              
Sbjct: 333 GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD---------------------------- 364

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +E A + F   +   +  WN ++    Q         +  +MQ  G+ PN  T  SI
Sbjct: 365 ---IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSI 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L  G++IH   +K+ +  N+YV + +ID YAK G L  A+ +  R +   +
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I+ Y  H   ++A+ LF EM N GI+ D + F++ +SACA    +++   I +A
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI-HA 540

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            S   G    +     +V + +R  R  +A     K+  K +   W AL+ G + SG  E
Sbjct: 541 QSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCE 599



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 164/353 (46%), Gaps = 34/353 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V WN M+  Y Q G   E   +F +M     L P+  T  S+L+ C     +  G ++
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQM-QIEGLMPNQYTYPSILRTCTSLGALDLGEQI 437

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+S  + ++++C+ LI MYAK                               HG +
Sbjct: 438 HTQVIKSGFQFNVYVCSVLIDMYAK-------------------------------HGEL 466

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A  + Q ++   + +W A+I+G  Q++     L L +EM+  G+R + +  SS  S  
Sbjct: 467 DTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC 526

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G++IH  +  + Y  ++ +  A++  YA+ G    A   F++   +  I W 
Sbjct: 527 AGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWN 586

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+IS +A  G   +A+ +F++M   G++ +  TF + +SA A++  + +   I +AM  +
Sbjct: 587 ALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQI-HAMMIK 645

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G     E    ++ + S+   I +A     +MP K +   W A++ G S  G
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEK-NVVSWNAMITGYSQHG 697



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 144/289 (49%), Gaps = 32/289 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D VSW +MI+G SQ G  +E   LF +M  S V+ P      SVL AC +      G +
Sbjct: 176 KDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI-PTPYVFSSVLSACTKIELFKLGEQ 234

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F+++  +  + ++CNAL+ +Y++ G+L  A  +  +M  +D +SY+++ISG    GF
Sbjct: 235 LHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGF 294

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            ++A+ LF+                               +MQ   ++P+ VT++S+ S 
Sbjct: 295 SDRALQLFE-------------------------------KMQLDCMKPDCVTVASLLSA 323

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +       GK++H Y +K     ++ +  +++D Y K   +  A   F   +  ++++W
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLW 383

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
             ++ AY   G+ S++  +F +M   G+ P+  T+ ++L  C   G +D
Sbjct: 384 NVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALD 432



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 166/401 (41%), Gaps = 69/401 (17%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC-GQSSDIVFGMEVHNF 67
           WN +I+G        +   LF  M+   V  PD  T  SVL+AC G  +      ++H  
Sbjct: 79  WNKVISGLLAKKLASQVLGLFSLMITENV-TPDESTFASVLRACSGGKAPFQVTEQIHAK 137

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           +I         +CN LI +Y+K G +D A+ + + +  KD VS                 
Sbjct: 138 IIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS----------------- 180

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         W A+ISGL QN R +  + L  +M  S V P     SS+ S  +  
Sbjct: 181 --------------WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKI 226

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
              K G+++HG+ VK       +V  A++  Y++ G L  A+++F +   R  I + ++I
Sbjct: 227 ELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLI 286

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           S  A  G + +A+ LF +M  + ++PD VT  ++LSACA  G            +G  G 
Sbjct: 287 SGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVG------------AGYKGK 334

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
           Q                        +V KM +     + G+LL       D+E      +
Sbjct: 335 Q---------------------LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH---E 370

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +    E EN   + +M   Y Q G   E+  +  QM+  GL
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGL 411



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D ++V  S +I  Y+ HG V+ A+ LF  +    +S WN VISGL+       VL L   
Sbjct: 42  DGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSL 101

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGK-------EIHGYAVKNRYDRNIYVATAIID 217
           M    V P+  T +S+    S      GGK       +IH   + + +  +  V   +ID
Sbjct: 102 MITENVTPDESTFASVLRACS------GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLID 155

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y+K G +  A+ VF+R   +  + W A+IS  + +G   +A+ LF +M  + + P P  
Sbjct: 156 LYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV 215

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC--MVGVLSRARRISEATEFVS 335
           F++VLSAC    L  K  +  +    ++G+  S E + C  +V + SR   +  A +  S
Sbjct: 216 FSSVLSACTKIELF-KLGEQLHGFIVKWGL--SSETFVCNALVTLYSRWGNLIAAEQIFS 272

Query: 336 KM 337
           KM
Sbjct: 273 KM 274



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 106/248 (42%), Gaps = 35/248 (14%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M+  G+R N  T   +F    +  +L   K++H    K+ +D    + + +ID Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A ++FD     ++  W  +IS   A   AS+ + LF+ M+   + PD  TF +VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           C+                G+   Q + + +A ++                       S  
Sbjct: 121 CS---------------GGKAPFQVTEQIHAKII-----------------HHGFGSSPL 148

Query: 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           V   L+   S +G V+L K V + LF    +++ +++ M +  SQ GR DEA  +  QM 
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLF---LKDSVSWVAMISGLSQNGREDEAILLFCQMH 205

Query: 405 ESGLAKIP 412
           +S +   P
Sbjct: 206 KSAVIPTP 213


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 266/483 (55%), Gaps = 40/483 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V+WN MI+ Y Q G +E+   +   M     LR D VT+ S+L     + D+  G +
Sbjct: 378 KDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKK 437

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--------------- 108
           +H F I +    D+ + + ++ MYAKCG +D AR +      K +               
Sbjct: 438 LHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKG 497

Query: 109 ---------------------VSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWN 143
                                VS++++I G+  +G V +A D+F  M+     P L TW 
Sbjct: 498 LSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWT 557

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +ISGL QN        + ++MQ +G+RPN+++I+S  S  ++ + L  G+ IHGY ++N
Sbjct: 558 TMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRN 617

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
               ++ + T+IID YAK G L  A+ VF     + L ++ A+ISAYA+HG +++A++LF
Sbjct: 618 FMSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALF 677

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            E++  GI PD +TFT+VLSAC+H  L+ +  ++F  M  +  ++PS +HY C+V +L+ 
Sbjct: 678 QELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTN 737

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
             ++ EA   +  MP  P A + G+LL     + + EL  ++   L ++EP N GNY+ +
Sbjct: 738 DGQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVAL 797

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y+  G+WDE   +R  MKE GL KIPG SWIE    L  F+A D S  + E+IY IL
Sbjct: 798 SNVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEVGQELNVFIASDKSHPEKEEIYKIL 857

Query: 444 ERL 446
           + L
Sbjct: 858 DLL 860



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 198/413 (47%), Gaps = 57/413 (13%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           KR+ V WNSMI GY Q G   E   LF +M     + P  V++     AC     +  G 
Sbjct: 274 KRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEGK 333

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMVH 121
           + H  VI    +++  + ++++  Y+K G ++    +   M+  KDEV+++ +IS Y+  
Sbjct: 334 QGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQF 393

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  EKA+++   M+                              +   +R + VT+SS+ 
Sbjct: 394 GMFEKALEMCHWMR------------------------------EEENLRFDCVTLSSLL 423

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-- 239
           +L +   ++K GK++HG+ ++N +  ++ V + ++D YAK G +  A+ VF  F G+   
Sbjct: 424 ALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVF-HFAGKKKD 482

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++W  +++A A  G + +A+ LF +M    + P+ V++ +++     +G V +A D+F+
Sbjct: 483 IVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFS 542

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKP---------SAKVWG 347
            M    G+ P++  +  M+  L++     EA+    +M    ++P         SA    
Sbjct: 543 EMQLS-GVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNM 601

Query: 348 ALL-YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           ALL YG SI G      +V  +      + T + I   ++Y++ G  D+A  V
Sbjct: 602 ALLNYGRSIHG------YVMRNFMSFSLQITTSII---DMYAKCGNLDDAKFV 645



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 194/454 (42%), Gaps = 82/454 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++ S+ +++   ++ G Y+E    + EM+      PD   V + L+ACG    I F
Sbjct: 167 VKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFC-PDNFVVPNGLKACGGLRWIGF 225

Query: 61  GMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIIS 116
           G  +H FV++   + D  +++  +L+ MY KCG L+ A  + DEM +  +++V ++++I 
Sbjct: 226 GRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIV 285

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+ +G   +A+ LF+ M+  G                              GV P+ V+
Sbjct: 286 GYVQNGMNVEAVGLFEKMRFEG------------------------------GVEPSEVS 315

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +S  FS  ++   ++ GK+ H   +   ++ N  + ++I++ Y+K G +   + VF    
Sbjct: 316 LSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMA 375

Query: 237 G-RSLIIWTAIISAYAAHGDASKAVSLFNEM----------------------------- 266
             +  + W  +IS+Y   G   KA+ + + M                             
Sbjct: 376 VLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLG 435

Query: 267 -------LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
                  + N    D    + VL   A  G++D A  +F+      G +  +  +  M+ 
Sbjct: 436 KKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFA----GKKKDIVLWNTMLA 491

Query: 320 VLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGK--FVCDHLFEIEP 374
             +      EA +   +M    V P+   W +L++G   +G V   +  F    L  + P
Sbjct: 492 ACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTP 551

Query: 375 ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            N   +  M +  +Q G   EA RV +QM+ +G+
Sbjct: 552 -NLITWTTMISGLAQNGLGYEASRVFQQMQGAGM 584



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 55/330 (16%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C  + D+  G+++H  +I+  S    + ++ + L+ +YAKC               
Sbjct: 109 LLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKCN-------------- 154

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                    ++   VH F         V+K   L ++ A++    +N  ++  L    EM
Sbjct: 155 ---------LTRVAVHFFR-------NVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEM 198

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTG 223
              G  P+   + +          +  G+ IHG+ VK  N +D  +YVAT+++D Y K G
Sbjct: 199 MEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCG 258

Query: 224 FLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTA 280
            L  A++VFD    + R+ ++W ++I  Y  +G   +AV LF +M    G++P  V+ + 
Sbjct: 259 VLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSG 318

Query: 281 VLSACAHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
             SACA+   V++     A  I       Y +  S+ ++   VG++       E  E V 
Sbjct: 319 FFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLI-------EEVELVF 371

Query: 336 K-MPVKPSAKVWGALLYGASISGDVELGKF 364
           + M V      W  +     IS  V+ G F
Sbjct: 372 RSMAVLKDEVTWNLM-----ISSYVQFGMF 396



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S +++  +N+MI+ Y+  G   E  ALF+E++   ++ PD +T  SVL AC     +  G
Sbjct: 650 STKELPVYNAMISAYASHGKSAEALALFQELVKQGIM-PDHITFTSVLSACSHGRLLKEG 708

Query: 62  MEVHNFVI-ESHIKMDLWICNALIGMYAKCGSLDYA-RALLDEMSDKD 107
           +E+  +++ E  +K        L+ +    G LD A R +L   S  D
Sbjct: 709 LELFKYMVCELQMKPSEKHYGCLVKLLTNDGQLDEALRIILTMPSPPD 756


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 170/437 (38%), Positives = 254/437 (58%), Gaps = 10/437 (2%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D  T+  VL++C   S +  G  VH   +   ++ D ++  +LI MY KCG +  AR L 
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D+M  +D  S++A+I+GYM  G +  A DLF+ M+   + +W A+ISG  QN   E  L 
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225

Query: 161 LVREMQASG--VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           L  EM   G  ++PN VTI S+    +  + L+ G+ IH +A       N  V TA+   
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 285

Query: 219 YAKTGFLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           YAK   L  A+  FD     G++LI W  +I+AYA+HG   +AVS+F  ML  G+QPD V
Sbjct: 286 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAV 345

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           TF  +LS C+HSGL+D   + FN M   + ++P VEHYAC+V +L RA R+ EA E +S+
Sbjct: 346 TFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQ 405

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           MP++    VWGALL       ++E+ +     LF +EP+N+GNY++++NLY++AG W+E 
Sbjct: 406 MPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEV 465

Query: 397 DRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE------RLLGLM 450
            ++R  +K  G+ K PG SWIE +G    F+  D S  ++++IY  LE      ++ G +
Sbjct: 466 KKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYI 525

Query: 451 REEGYVLLDEVEEESAY 467
            +  +VL D  EEE  Y
Sbjct: 526 PDTSFVLHDISEEEKEY 542



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R+IVSW +MI+GY+Q GF E+   LF EML +   ++P+ VT+VSVL AC QS+ + 
Sbjct: 199 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIISG 117
            G  +H+F     + ++  +  AL GMYAKC SL  AR   D ++   K+ ++++ +I+ 
Sbjct: 259 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 318

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           Y  HG   +A+ +F+ M R G+        GL+    H  ++D
Sbjct: 319 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLID 361



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 131/319 (41%), Gaps = 78/319 (24%)

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           L+    M   G+  +  T+  +    +  S +  G+ +HG  ++   + + YV  ++ID 
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 219 YAKTGFLHGAQRVFD-------------------------------RFKGRSLIIWTAII 247
           Y K G +  A+++FD                               R + R+++ WTA+I
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 248 SAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIFN------ 299
           S Y  +G A +A+ LF+EML +G  ++P+ VT  +VL ACA S  +++   I +      
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 300 ---------AMSGQYGIQPS-VEHYACMVGVLSRARRI----------------SEATEF 333
                    A++G Y    S VE   C   +    + +                 EA   
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 334 VSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDH------LFEIEPENTGNYIIMA 384
              M    V+P A  +  LL G S SG ++ G    +H      +  +EP    +Y  + 
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG---LNHFNDMGTIHSVEPR-VEHYACVV 387

Query: 385 NLYSQAGRWDEADRVREQM 403
           +L  +AGR  EA  +  QM
Sbjct: 388 DLLGRAGRLVEAKELISQM 406


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 264/445 (59%), Gaps = 4/445 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           K  +  +N +I  YS    ++ +C +L+ +ML    L P+  T   +  AC   S    G
Sbjct: 44  KPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFL-PNQHTFNFLFSACTSLSSPSLG 102

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H   I+S  + DL+   AL+ MY K G+L+ AR L D+M  +   +++A+++G+   
Sbjct: 103 QMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARF 162

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSI 180
           G ++ A++LF++M    + +W  +ISG  ++ ++   L L   M Q  G+ PNAVT++SI
Sbjct: 163 GDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASI 222

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-RS 239
           F  F++   L+ G+ +  YA KN + +N+YV+ A+++ YAK G +  A +VF+     R+
Sbjct: 223 FPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRN 282

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W ++I   A HG+  K + L+++ML  G  PD VTF  +L AC H G+V+K   IF 
Sbjct: 283 LCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFK 342

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M+  + I P +EHY CMV +L RA ++ EA E + +MP+KP + +WGALL   S   +V
Sbjct: 343 SMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNV 402

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +   + LF +EP N GNY+I++N+Y+ AG+WD   ++R+ MK S + K  G S+IE 
Sbjct: 403 ELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEE 462

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILE 444
            G L  F+ +D S  +S +I+ +L+
Sbjct: 463 GGQLHKFIVEDRSHPESNEIFALLD 487



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 32/261 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSW +MI+GYS+   Y E   LF  M     + P+ VT+ S+  A      +  
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEI 234

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
           G  V  +  ++    +L++ NA++ MYAKCG +D A  + +E+ S ++  S++++I G  
Sbjct: 235 GQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLA 294

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           VHG   K + L+  M   G S  +    GL+    H  +++  R +  S       T  +
Sbjct: 295 VHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKS-----MTTSFN 349

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I     H+                           ++D   + G L  A  V  R   + 
Sbjct: 350 IIPKLEHYG-------------------------CMVDLLGRAGQLREAYEVIQRMPMKP 384

Query: 240 -LIIWTAIISAYAAHGDASKA 259
             +IW A++ A + H +   A
Sbjct: 385 DSVIWGALLGACSFHDNVELA 405



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K+IHGY ++N  D+       +I+   +   LH A +V       +L ++  +I AY++H
Sbjct: 5   KQIHGYTLRNGIDQ----TKILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSH 60

Query: 254 GD-ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE 312
                +  SL+++ML +   P+  TF  + SAC  S        + +    + G +P + 
Sbjct: 61  PQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACT-SLSSPSLGQMLHTHFIKSGFEPDLF 119

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
               ++ + ++   +  A +   +MPV+     W A++ G +  GD++    V   LF +
Sbjct: 120 AATALLDMYTKVGTLELARKLFDQMPVR-GVPTWNAMMAGHARFGDMD----VALELFRL 174

Query: 373 EP-ENTGNYIIMANLYSQAGRWDEA 396
            P  N  ++  M + YS++ ++ EA
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEA 199


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 258/455 (56%), Gaps = 33/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K +I  WN +I GY+  G YE    L+ +M +  ++ PD  T   VL+AC   S I  
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV-PDNFTFPFVLKACAALSAIEH 194

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  V+++  + D+++  ALI MYAKCG +  AR + D++  +D V           
Sbjct: 195 GREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV----------- 243

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++   QN   +A L L  EM  +G+RP   T+ + 
Sbjct: 244 --------------------LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTA 283

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L  G+E+HG + +  ++ +  V TA++D YAK G +  A+ +F+R   + +
Sbjct: 284 ISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRV 343

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ YA HG A++A+ LF EM N   +PD +TF  VLSAC+H GL+++ W  F  
Sbjct: 344 VSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFET 402

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P+V+HY CMV +L  + R+ EA   + +M V P + VWGALL    I  +VE
Sbjct: 403 MIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVE 462

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + L E+EP++ GNY+I++N+Y+QAG+W+   ++R+ M +  L K    SWIE  
Sbjct: 463 LGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVK 522

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             + +F++ DTS   S++IY  LER+ GLM+E GY
Sbjct: 523 NKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGY 557



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 171/407 (42%), Gaps = 71/407 (17%)

Query: 35  SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94
           S  L P      S+LQ+C     I  G ++H  V  +    D  I   L+ +Y  C SL 
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
            AR L D +   +                               +  WN +I G   N  
Sbjct: 128 SARLLFDRIPKHN-------------------------------IFLWNVLIRGYAWNGP 156

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +EA + L  +M   G+ P+  T   +    +  S ++ G+EIH + V+  ++++++V  A
Sbjct: 157 YEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAA 216

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +ID YAK G +  A+ VFD+   R  ++W ++++AY+ +G     +SL +EM+  G++P 
Sbjct: 217 LIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPT 276

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
             T    +SA A +  + +  ++ + +S +   +   +    +V + ++   +  A    
Sbjct: 277 EATLVTAISASADNAALPQGREL-HGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLF 335

Query: 335 SKMPVKPSAKVWGALLYGASISGDV--------ELGK--------FV-----CDH----- 368
            ++ VK     W A++ G ++ G          E+ +        FV     C H     
Sbjct: 336 ERLGVKRVVS-WNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLE 394

Query: 369 ----LFE-------IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
                FE       I+P    +Y  M +L   +GR DEA  +  QMK
Sbjct: 395 EGWMFFETMIRDYKIDP-TVQHYTCMVDLLGHSGRLDEAYNLIMQMK 440


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 285/507 (56%), Gaps = 46/507 (9%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA---CGQ--- 54
            M+ R  VSWN+M++GY+          +FR M+ S  L P+ VT  S+L +   CGQ   
Sbjct: 1034 MAVRSCVSWNTMVSGYALNYDCHGASEMFR-MMGSAGLEPNLVTWTSLLSSHARCGQHVE 1092

Query: 55   --------------------------SSDIVF---GMEVHNFVIESHIKMDLWICNALIG 85
                                      S D+     G  +H +V++   +  L++ N+LI 
Sbjct: 1093 TMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLIC 1152

Query: 86   MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF--------QVMKRP 137
            +Y K G+++ AR L  E+  K+ VS++A+IS Y   G+ ++A  +F          M RP
Sbjct: 1153 LYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRP 1212

Query: 138  GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
             + +W+AVI G     + E  L+L R MQ + V+ N+VTI+S+ S+ +  + L  G+EIH
Sbjct: 1213 NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIH 1272

Query: 198  GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
            G+ V++  D NI V   +I+ Y K+G       VF++ + + LI W  +++ Y  HG   
Sbjct: 1273 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 1332

Query: 258  KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
             A+  F++M+ +G +PD VTF AVLSAC+H+GLV +  ++F+ M  ++ ++P +EHYACM
Sbjct: 1333 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 1392

Query: 318  VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
            V +L RA  + EA++ V  MPV+P+A VWGALL    +  + E+ +     +F +  E  
Sbjct: 1393 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 1452

Query: 378  GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE 437
            G+Y++++N+Y+ +GRW+++ +VR   K  GL K PG+SWI+    +  F A +T   + E
Sbjct: 1453 GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELE 1512

Query: 438  QIYLILERLLGLMREEGYVLLDEVEEE 464
            ++Y IL+ L   M  EGY+   +++EE
Sbjct: 1513 EVYRILKDLGLQMEVEGYI--PDIDEE 1537



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 159/305 (52%), Gaps = 9/305 (2%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
            +++ WNS++      G+ EE   ++  M    V   DG T   V++AC           V
Sbjct: 937  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGV-SADGFTFPLVIRACALMGSRKLCRSV 995

Query: 65   HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            H  V+E   + +L + N L+GMY K G +D AR + + M+ +  VS++ ++SGY ++   
Sbjct: 996  HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 1055

Query: 125  EKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              A ++F++M      P L TW +++S   +  +H   ++L   M+  G+   A  ++ +
Sbjct: 1056 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 1115

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             S+    +    GK IHGY VK  ++  ++V  ++I  Y K G ++ A+ +F   K +++
Sbjct: 1116 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 1175

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNG----IQPDPVTFTAVLSACAHSGLVDKAWD 296
            + W A+IS+YA  G   +A ++F ++        ++P+ V+++AV+   A  G  ++A +
Sbjct: 1176 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 1235

Query: 297  IFNAM 301
            +F  M
Sbjct: 1236 LFRRM 1240



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 114  IISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGV 170
            ++S Y   G V  A  +F+V      S    WN+++   V +   E  L++   M+  GV
Sbjct: 910  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 969

Query: 171  RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
              +  T   +    +   + K  + +HG+ V+  +  N++V   ++  Y K G +  A++
Sbjct: 970  SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 1029

Query: 231  VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
            VF+R   RS + W  ++S YA + D   A  +F  M + G++P+ VT+T++LS+ A  G 
Sbjct: 1030 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 1089

Query: 291  VDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
              +  ++F  M    GI  + E  A ++ V
Sbjct: 1090 HVETMELFGRMR-MRGIGATAEALAVVLSV 1118



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 11/194 (5%)

Query: 171  RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
            +PN   +     L    S     ++IH   +     R+ ++A  ++  YA  G +  AQR
Sbjct: 866  QPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR 925

Query: 231  VFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            VF+        +L++W +I+ A  AHG   +A+ ++  M   G+  D  TF  V+ ACA 
Sbjct: 926  VFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACAL 985

Query: 288  SGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
             G    +  +  ++ G   + G Q ++     ++G+  +  R+ +A +   +M V+ S  
Sbjct: 986  MG----SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR-SCV 1040

Query: 345  VWGALLYGASISGD 358
             W  ++ G +++ D
Sbjct: 1041 SWNTMVSGYALNYD 1054


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 266/460 (57%), Gaps = 5/460 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+VSWN MI  Y Q G + E   L+++ L+    +    T VS+L AC     +  
Sbjct: 268 MKKRDMVSWNVMIGCYVQNGDFHEALELYQK-LDMEGFKRTKATFVSILGACSSVKALAQ 326

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+ ++E  +  ++ +  AL+ MYAKCGSL+ AR + + M ++D V++S +I  Y  
Sbjct: 327 GRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYAS 386

Query: 121 HGFVEKAMDLFQVMKRPGLS---TWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVT 176
           +G+ + A    +V  R G      WNA+I+  VQN    A + + REM  A+G++P+AVT
Sbjct: 387 NGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVT 446

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
             ++    +    L   K +H    ++  + N+ V   +I+ YA+ G L  A+R+F   K
Sbjct: 447 FIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++++ WTA+++A++ +G  ++A+ LF EM   G++PD VT+T++L  C H G +++ W 
Sbjct: 507 EKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWR 566

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F  M+  +G+ P+ +H+A MV +L R+ R+ +A E +  MP +P    W   L    I 
Sbjct: 567 YFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIH 626

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G +ELG+   + ++E++P +T  YI M+N+Y+  G W++   VR++M+E GL K+PG S+
Sbjct: 627 GKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSF 686

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           IE  G L  F +      ++++I   L RL GLMR  GYV
Sbjct: 687 IEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYV 726



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 176/370 (47%), Gaps = 41/370 (11%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R++VSWN+MIA Y+Q G   E   L+  M N   L  D VT VSVL AC   S +  G 
Sbjct: 72  QRNVVSWNAMIAAYAQNGHSTEALVLYWRM-NLQGLGTDHVTFVSVLGAC---SSLAQGR 127

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+HN V  S +     + NAL+ MYA+ GS+  A+ +   +  +DE S++A+I  +   G
Sbjct: 128 EIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSG 187

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
               A+ +F+ MK                                  ++PN+ T  ++ S
Sbjct: 188 DWSGALRIFKEMK--------------------------------CDMKPNSTTYINVIS 215

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            FS    L  G++IH   V N +D ++ VATA+I+ Y K G  H A+ VFD+ K R ++ 
Sbjct: 216 GFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVS 275

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  +I  Y  +GD  +A+ L+ ++   G +    TF ++L AC+    + +   + ++  
Sbjct: 276 WNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHI 334

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG---DV 359
            + G+   V     +V + ++   + EA +  + M  +  A  W  L+   + +G   D 
Sbjct: 335 LERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDA 393

Query: 360 ELGKFVCDHL 369
              + V D L
Sbjct: 394 RKARKVFDRL 403



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 193/415 (46%), Gaps = 48/415 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD  SWN++I  +SQ G +     +F+EM     ++P+  T ++V+        +  
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD--MKPNSTTYINVISGFSTPEVLPE 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  ++ +    DL +  ALI MY KCGS   AR + D+M  +D VS++ +I  Y+ 
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++L+Q                               ++   G +    T  SI
Sbjct: 286 NGDFHEALELYQ-------------------------------KLDMEGFKRTKATFVSI 314

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    L  G+ +H + ++   D  + VATA+++ YAK G L  A++VF+  K R  
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 241 IIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + W+ +I AYA++G   DA KA  +F+ + +     D + + A+++    +G    A  I
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSR----DTICWNAMITTYVQNGCAVAAMKI 430

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGAS 354
           F  M+G  G++P    +  ++   +   R+SE       +S+  ++ +  V   L+   +
Sbjct: 431 FREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYA 490

Query: 355 ISGDVELGKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             G +E      + LF    E T  ++  M   +SQ GR+ EA  + ++M   G+
Sbjct: 491 RCGSLEEA----ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 170/407 (41%), Gaps = 81/407 (19%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           +PD VT ++VL +C    D+  G  +H  +  S  + D  + NALI MY KC SL  AR+
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 99  LLDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + + M    ++ VS++A+I+ Y  +G   +A+ L+  M   GL T               
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGT--------------- 108

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
                           + VT  S+       S+L  G+EIH     +  D    +A A++
Sbjct: 109 ----------------DHVTFVSVLGA---CSSLAQGREIHNRVFYSGLDSFQSLANALV 149

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM---------- 266
             YA+ G +  A+R+F   + R    W A+I A++  GD S A+ +F EM          
Sbjct: 150 TMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTT 209

Query: 267 ------------------------LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
                                   + NG   D V  TA+++     G   +A ++F+ M 
Sbjct: 210 YINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMK 269

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDV 359
            +  +  +V     M+G   +     EA E   K+ +   K +   + ++L   S    +
Sbjct: 270 KRDMVSWNV-----MIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 360 ELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             G+ V  H+ E  ++ E       + N+Y++ G  +EA +V   MK
Sbjct: 325 AQGRLVHSHILERGLDSE-VAVATALVNMYAKCGSLEEARKVFNAMK 370


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 268/472 (56%), Gaps = 10/472 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V+W S+I+ Y++ G++EE   LF  M    V    G  +  V+  C      V    +
Sbjct: 142 NLVTWTSLISSYARSGWHEEAMELFGLMRMKGV-EVSGEALAVVISICADLGAFVRAKII 200

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + ++   +   ++ +ALI +Y K G ++ A  L  EM +K   S++A+I+ +   G  
Sbjct: 201 HEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLC 260

Query: 125 EKAMDLFQVMKR--------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           ++A+++F  ++R        P + +W+A+I G     R +  L+L R MQ + +  NAVT
Sbjct: 261 DEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVT 320

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           IS++ SL +  + L  G+EIHG+ V+     NI V   +++ YAK G L     +F++ +
Sbjct: 321 ISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTE 380

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + LI W ++I+ Y  HG    A+  F++M+  G +PD VTF AVLS+C+HSGLV +   
Sbjct: 381 RKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRR 440

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F+ M  +Y I+P +EHYACMV +L RA  + EA+E V  MPV P+A VWGALL    + 
Sbjct: 441 LFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMH 500

Query: 357 GDVELGKFVCDHLFEI-EPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            + E+ +    HLF +   E TG Y++++N+Y+ +GRW+++ RVR   K  GL K PG+S
Sbjct: 501 NNTEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQS 560

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
           WI+    + +F A +      EQI+ ILE L   M  EG V   ++  ++ Y
Sbjct: 561 WIKVEKNVYTFSAGNNMQRGFEQIFEILEELTFQMEREGTVHDTDITPQAVY 612



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 144/269 (53%), Gaps = 8/269 (2%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           DG T   V++AC      + G  +H  V+E   +  L + N LIGMYAK G +  AR L 
Sbjct: 41  DGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLF 100

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHE 156
           D MS +  +S++ ++S Y  +     A+++FQ M+     P L TW ++IS   ++  HE
Sbjct: 101 DRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHE 160

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             ++L   M+  GV  +   ++ + S+ +        K IH YAVK  ++   +V +A+I
Sbjct: 161 EAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALI 220

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG----IQ 272
             Y K G ++GA  +F   K +SL  W A+I+++A  G   +A+ +F+++  +G    ++
Sbjct: 221 CVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLR 280

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           P+ V+++A++   A  G   +A ++F  M
Sbjct: 281 PNVVSWSAIIDGFASKGREKEALELFRRM 309



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 133/257 (51%), Gaps = 13/257 (5%)

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
           A+  + R M+  G   +  T   +    ++  +   GK IHG+ ++  +  +++V   +I
Sbjct: 25  AISVMPRRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELI 84

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YAK G +  A+ +FDR   RS I W  ++SAYA + D + A+ +F  M + G++P+ V
Sbjct: 85  GMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLV 144

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV------GVLSRARRISEA 330
           T+T+++S+ A SG  ++A ++F  M  + G++ S E  A ++      G   RA+ I   
Sbjct: 145 TWTSLISSYARSGWHEEAMELFGLMRMK-GVEVSGEALAVVISICADLGAFVRAKIIH-- 201

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390
            E+  K   +  + V  AL+      GDV  G +  +   E++ ++  ++  +   +++A
Sbjct: 202 -EYAVKGGFEEYSFVKSALICVYGKHGDVN-GAW--NLFLEMKNKSLASWNALITSHAEA 257

Query: 391 GRWDEADRVREQMKESG 407
           G  DEA  +  Q++ SG
Sbjct: 258 GLCDEALEIFSQLERSG 274



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 19/207 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI---- 58
           ++D++SWNSMI GY   G        F +M+     +PDGVT V+VL +C  S  +    
Sbjct: 381 RKDLISWNSMITGYGMHGLGMNALETFDQMIKLG-FKPDGVTFVAVLSSCSHSGLVHEGR 439

Query: 59  -VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
            +F   +  + IE   +M+ + C  ++ +  + G L  A  ++  M    +   + A+++
Sbjct: 440 RLFDQMLKKYRIEP--QMEHYAC--MVDLLGRAGLLREASEIVKNMPVAPNACVWGALLN 495

Query: 117 GYMVHGFV----EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
              +H       E A  LF +  R    T+  + +    + R E    +    +  G++ 
Sbjct: 496 SCRMHNNTEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKK 555

Query: 173 NA----VTISSIFSLFSHFSNLKGGKE 195
           N     + +      FS  +N++ G E
Sbjct: 556 NPGQSWIKVEKNVYTFSAGNNMQRGFE 582


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/470 (35%), Positives = 270/470 (57%), Gaps = 11/470 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNS+I  Y Q G   E   LF EM+ +    PD VT+ SV+ AC   +    
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMM-AAGFSPDEVTLSSVMSACAGLAADRE 270

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G +VH  +++   ++ D+ + NAL+ MYAKCG    AR + D M  +  VS ++I++GY 
Sbjct: 271 GRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYA 330

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               VE A  +F  M    +  WN +I+   QN   E  + L  +++   + P   T  +
Sbjct: 331 KSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGN 390

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKN--RYD----RNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +   + ++L+ G++ H + +K   R+D     +++V  +++D Y KTG +    +VF+
Sbjct: 391 VLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFE 450

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R  + W A+I  YA +G A  A+ LF  ML +   PD VT   VLSAC HSGLVD+
Sbjct: 451 RMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDE 510

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F++M+  +GI PS +HY CMV +L RA  + EA E ++ MP++P + +W +LL   
Sbjct: 511 GRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGAC 570

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  +VELG++    LFE++P+N+G Y++++N+Y++ G+W E  RVR  MK+ G++K PG
Sbjct: 571 RLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPG 630

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
            SWIE    +  F+A+D       +I+  L R++ +  E G   +DE+++
Sbjct: 631 CSWIEIGRKMNVFLARDKRHPCRNEIHNTL-RIIQM--EMGRTSIDEIDD 677



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 176/346 (50%), Gaps = 6/346 (1%)

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++S +  + ++ N L+  YA+ G L  AR + DE+  ++  SY+A++S Y   G  
Sbjct: 40  HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRP 99

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV--LDLVREMQASGVRPNAVTISSIFS 182
           ++A  LF+ +  P   ++NAV++ L ++ R  A   L  +  M A     NA + +S  S
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALS 159

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   + + G+++HG   ++ +  ++++ +A++D YAK      A+RVFD    R+++ 
Sbjct: 160 ACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVS 219

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++I+ Y  +G   +A+ LF EM+  G  PD VT ++V+SACA      +   +   M 
Sbjct: 220 WNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMV 279

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
               ++  +     +V + ++  R  EA      MP + S     ++L G + S +VE  
Sbjct: 280 KCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR-SIVSETSILTGYAKSANVEDA 338

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + V   + E   +N   + ++   Y+Q G  +EA R+  Q+K   +
Sbjct: 339 QVVFSQMVE---KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI 381



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 185/410 (45%), Gaps = 81/410 (19%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL-FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D  S+N+++A  ++ G      AL F   +++     +  +  S L AC    D   G +
Sbjct: 113 DQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQ 172

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V  S    D+ I +AL+ MYAKC   + AR + D M +++ VS++++I+ Y  +G 
Sbjct: 173 VHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGP 232

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V +A+ LF                                EM A+G  P+ VT+SS+ S 
Sbjct: 233 VGEALMLFV-------------------------------EMMAAGFSPDEVTLSSVMSA 261

Query: 184 FSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            +  +  + G+++H + VK +R   ++ +  A++D YAK G    A+ +FD    RS++ 
Sbjct: 262 CAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVS 321

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
            T+I++ YA   +   A  +F++M+   +    + +  +++A A +G  ++A  +F    
Sbjct: 322 ETSILTGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLF---- 373

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
               +Q                         + +  + P+   +G +L       D++LG
Sbjct: 374 ----VQ-------------------------LKRDSIWPTHYTYGNVLNACGNIADLQLG 404

Query: 363 KFVCDHL------FEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQM 403
           +    H+      F+  PE+    GN ++  ++Y + G  D+  +V E+M
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLV--DMYLKTGSIDDGAKVFERM 452



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 4/112 (3%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S +  L     NL G +  H   +K+      ++   ++ TYA+ G L  A+RVFD    
Sbjct: 21  SPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPL 80

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           R+   + A++SAYA  G   +A +LF  + +    PD  ++ AV++A A  G
Sbjct: 81  RNTFSYNALLSAYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHG 128


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 285/507 (56%), Gaps = 46/507 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA---CGQ--- 54
           M+ R  VSWN+M++GY+          +FR M+ S  L P+ VT  S+L +   CGQ   
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFR-MMGSAGLEPNLVTWTSLLSSHARCGQHVE 254

Query: 55  --------------------------SSDIVF---GMEVHNFVIESHIKMDLWICNALIG 85
                                     S D+     G  +H +V++   +  L++ N+LI 
Sbjct: 255 TMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLIC 314

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF--------QVMKRP 137
           +Y K G+++ AR L  E+  K+ VS++A+IS Y   G+ ++A  +F          M RP
Sbjct: 315 LYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRP 374

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            + +W+AVI G     + E  L+L R MQ + V+ N+VTI+S+ S+ +  + L  G+EIH
Sbjct: 375 NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIH 434

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
           G+ V++  D NI V   +I+ Y K+G       VF++ + + LI W  +++ Y  HG   
Sbjct: 435 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 494

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
            A+  F++M+ +G +PD VTF AVLSAC+H+GLV +  ++F+ M  ++ ++P +EHYACM
Sbjct: 495 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 554

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           V +L RA  + EA++ V  MPV+P+A VWGALL    +  + E+ +     +F +  E  
Sbjct: 555 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 614

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE 437
           G+Y++++N+Y+ +GRW+++ +VR   K  GL K PG+SWI+    +  F A +T   + E
Sbjct: 615 GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELE 674

Query: 438 QIYLILERLLGLMREEGYVLLDEVEEE 464
           ++Y IL+ L   M  EGY+   +++EE
Sbjct: 675 EVYRILKDLGLQMEVEGYI--PDIDEE 699



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 159/305 (52%), Gaps = 9/305 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WNS++      G+ EE   ++  M    V   DG T   V++AC           V
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGV-SADGFTFPLVIRACALMGSRKLCRSV 157

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V+E   + +L + N L+GMY K G +D AR + + M+ +  VS++ ++SGY ++   
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 125 EKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             A ++F++M      P L TW +++S   +  +H   ++L   M+  G+   A  ++ +
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+    +    GK IHGY VK  ++  ++V  ++I  Y K G ++ A+ +F   K +++
Sbjct: 278 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 337

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG----IQPDPVTFTAVLSACAHSGLVDKAWD 296
           + W A+IS+YA  G   +A ++F ++        ++P+ V+++AV+   A  G  ++A +
Sbjct: 338 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 397

Query: 297 IFNAM 301
           +F  M
Sbjct: 398 LFRRM 402



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 13/321 (4%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGV 170
           ++S Y   G V  A  +F+V      S    WN+++   V +   E  L++   M+  GV
Sbjct: 72  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             +  T   +    +   + K  + +HG+ V+  +  N++V   ++  Y K G +  A++
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VF+R   RS + W  ++S YA + D   A  +F  M + G++P+ VT+T++LS+ A  G 
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWG 347
             +  ++F  M  + GI  + E  A ++ V        E      +V K   +    V  
Sbjct: 252 HVETMELFGRMRMR-GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKN 310

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV---REQMK 404
           +L+      G+V   + +     EI+ +N  ++  + + Y+  G  DEA  +    E+  
Sbjct: 311 SLICLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTD 367

Query: 405 ESGLAKIPGRSWIECSGGLQS 425
           E  + +    SW    GG  S
Sbjct: 368 EYPMVRPNVVSWSAVIGGFAS 388



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           +L R +     +PN   +     L    S     ++IH   +     R+ ++A  ++  Y
Sbjct: 17  NLSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVY 76

Query: 220 AKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           A  G +  AQRVF+        +L++W +I+ A  AHG   +A+ ++  M   G+  D  
Sbjct: 77  AGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGF 136

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           TF  V+ ACA  G   K     +    + G Q ++     ++G+  +  R+ +A +   +
Sbjct: 137 TFPLVIRACALMG-SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195

Query: 337 MPVKPSAKVWGALLYGASISGD 358
           M V+ S   W  ++ G +++ D
Sbjct: 196 MAVR-SCVSWNTMVSGYALNYD 216


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 262/476 (55%), Gaps = 19/476 (3%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH- 65
           V WN+MI+GY Q G   E   LFR M+ S  + PD  T  S+L AC  +   + G  VH 
Sbjct: 262 VVWNAMISGYVQSGMCAEAFELFRRMV-SKRIPPDEFTFTSLLSACANAGFFLHGKSVHG 320

Query: 66  -------NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
                  +FV E+ + ++    NAL+ +Y+K G +  A  + D M+ KD VS++ I+SGY
Sbjct: 321 QFIRLQPDFVPEAALPVN----NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGY 376

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G ++ A  +F+ M      +W  ++SG V     E  L L  +M++  V+P   T +
Sbjct: 377 IESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYA 436

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
              +       LK GK++H + V+  ++ +     A++  YA+ G +  A+ VF      
Sbjct: 437 GAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNV 496

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + W A+ISA   HG   +A+ LF++M+  GI PD ++F  +L+AC H+GLVD  +  F
Sbjct: 497 DSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYF 556

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   +GI P  +HYA ++ +L RA RI EA + +  MP +P+  +W A+L G  I+GD
Sbjct: 557 ESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGD 616

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +ELG +  D LF++ PE+ G YI+++N YS AGRW +A RVR+ M++ G+ K PG SWIE
Sbjct: 617 MELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIE 676

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEESAYV 468
               +  F+  DT    + ++Y  LE +   MR+ GYV      L D    E  YV
Sbjct: 677 VGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYV 732



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 198/422 (46%), Gaps = 23/422 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIV 59
           +++RD V  N+MI+ +++        ++FR +L S   LRPD  +  S+L A GQ  D+ 
Sbjct: 117 VARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLA 176

Query: 60  FG--MEVHNFVIESHIKMDLWICNALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAI 114
                ++H  V +      L + NALI +Y KC   G    AR +LDEM +KDE++++ I
Sbjct: 177 VSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTI 236

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           + G++  G V  A   F+ +       WNA+ISG VQ+       +L R M +  + P+ 
Sbjct: 237 VVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDE 296

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQR 230
            T +S+ S  ++      GK +HG  ++ + D      + V  A++  Y+K+G +  A +
Sbjct: 297 FTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATK 356

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +FD    + ++ W  I+S Y   G    A  +F EM         +++  ++S   H GL
Sbjct: 357 IFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKS----ELSWMVMVSGYVHGGL 412

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMV---GVLSRARRISEATEFVSKMPVKPSAKVWG 347
            + A  +FN M  +  ++P    YA  V   G L   +   +    + +   + S     
Sbjct: 413 AEDALKLFNQMRSE-DVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGN 471

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           ALL   +  G V+  + V    F + P  ++ ++  M +   Q G   EA  + +QM   
Sbjct: 472 ALLTMYARCGAVKDARLV----FLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQ 527

Query: 407 GL 408
           G+
Sbjct: 528 GI 529



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK--GRSLIIWTAIISAYAAHGDAS 257
           AV  R D     AT+++  YA  G L  +   FD      R  ++  A+ISA+A    A+
Sbjct: 80  AVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAA 139

Query: 258 KAVSLFNEML--NNGIQPDPVTFTAVLSA 284
            AVS+F  +L  ++ ++PD  +FT++LSA
Sbjct: 140 PAVSVFRSLLASDDSLRPDDYSFTSLLSA 168


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 271/471 (57%), Gaps = 18/471 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD +SWN+MI+GY+QGG   + + LF E   SP    D  T  +++    Q+     
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDE---SPT--RDVFTWTAMVSGYVQN----- 279

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           GM  E   F  E   K ++   NA+I  Y +   +D AR L + M  ++  S++ +I+GY
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSY-NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY 338

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G + +A   F +M +    +W A+I+G  Q+  +E  L++  E++  G   N  T  
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFG 398

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
              S  +  + L+ GK+IHG AVK  Y    +V  A++  Y K G +  A   F+  + +
Sbjct: 399 CALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK 458

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W  +++ YA HG   +A+++F  M   G++PD +T   VLSAC+H+GL+D+  + F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M+  YG+ P+ +HY CM+ +L RA R+ EA + +  MP +P A  WGALL  + I G+
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG+   + +F++EP+N+G Y++++NLY+ +GRW +AD++R +M++ G+ K+PG SW+E
Sbjct: 579 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F   D S  + E+IY  LE L   MREEGYV     +L +VEEE
Sbjct: 639 VQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEE 689



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 193/453 (42%), Gaps = 69/453 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWNS+++GY+Q G+ +E + +F  M     +  +G+    V     + + ++F
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                    ES    DL   N L+G + +   L  AR L D+M  +D +S++ +ISGY  
Sbjct: 197 ---------ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQ 247

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A  LF       + TW A++SG VQN     +LD  +         N V+ +++
Sbjct: 248 GGGLSQARRLFDESPTRDVFTWTAMVSGYVQN----GMLDEAKTFFDEMPEKNEVSYNAM 303

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +     +   +E+     ++   RNI     +I  Y + G +  A++ FD    R  
Sbjct: 304 IAGYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC 359

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-------------- 286
           + W AII+ YA  G   +A+++F E+  +G   +  TF   LS CA              
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419

Query: 287 ---------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR-- 323
                                  G +D+A D F  +      +  V  +  M+   +R  
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE-----EKDVVSWNTMLAGYARHG 474

Query: 324 -ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-----NT 377
             R+     E +    VKP       +L   S +G ++ G    ++ + +  +      +
Sbjct: 475 FGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGT---EYFYSMTKDYGVIPTS 531

Query: 378 GNYIIMANLYSQAGRWDEA-DRVREQMKESGLA 409
            +Y  M +L  +AGR +EA D +R    + G A
Sbjct: 532 KHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAA 564



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 162/356 (45%), Gaps = 27/356 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI+ WN  I+ + + G  +    +F  M      R   V+  +++    ++S       +
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMP-----RRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            + + E     DL+  N ++  Y +   L  AR L D M +KD VS+++++SGY  +G+V
Sbjct: 103 FDQMPER----DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYV 158

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A ++F  M      +WN +++  V N R E    L      S    + ++ + +   F
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCLMGGF 214

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                L   +    +       R+      +I  YA+ G L  A+R+FD    R +  WT
Sbjct: 215 VRKKKLGDAR----WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWT 270

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++S Y  +G   +A + F+EM     + + V++ A+++    +  +D A ++F +M  +
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
                ++  +  M+    +   I++A +F   MP +     W A++ G + SG  E
Sbjct: 327 -----NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS-WAAIIAGYAQSGHYE 376



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 134/304 (44%), Gaps = 54/304 (17%)

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           + D D + ++  IS +M +G  + A+ +F  M R    ++NA+ISG ++N++     +L 
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            +M                                        +R+++    ++  Y + 
Sbjct: 104 DQMP---------------------------------------ERDLFSWNVMLTGYVRN 124

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
             L  A+R+FD    + ++ W +++S YA +G   +A  +F+ M     + + +++  +L
Sbjct: 125 CRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLL 180

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
           +A  H+G +++A  +F + S    I      + C++G   R +++ +A     KMPV+  
Sbjct: 181 AAYVHNGRIEEACLLFESKSDWDLIS-----WNCLMGGFVRKKKLGDARWLFDKMPVR-D 234

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVRE 401
           A  W  ++ G +  G +   +     LF+  P  +   +  M + Y Q G  DEA    +
Sbjct: 235 AISWNTMISGYAQGGGLSQAR----RLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 402 QMKE 405
           +M E
Sbjct: 291 EMPE 294



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 38/140 (27%)

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
           ++GL+D   + F  M+ +Y + P+ +HY CM+ +L R  R+ E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           GALL  + I G+ ELG+      F++ P+N+G                       +M++ 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG---------------------ISKMRDV 857

Query: 407 GLAKIPGRSWIECSGGLQSF 426
           G+ K+PG SW E    + +F
Sbjct: 858 GVQKVPGYSWFEVQNKIHTF 877


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 250/450 (55%), Gaps = 32/450 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+++ G ++ G + E   L R+M      RPD  T+ SVL    + +D+  
Sbjct: 131 MIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREG-FRPDSFTLSSVLPIFAECADVKR 189

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH F + +    D+++ ++LI MYA C   DY+  + D +  +D +           
Sbjct: 190 GSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPI----------- 238

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN+V++G  QN   E  L + R M  +GVRP  VT SS+
Sbjct: 239 --------------------LWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSL 278

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +  + ++L+ GK++H Y ++  ++ N+++++++ID Y K G +  A  +FDR     +
Sbjct: 279 IPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDV 338

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I  YA HG A +A+ LF  M     +P+ +TF AVL+AC+H+GLVDK W  F +
Sbjct: 339 VSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKS 398

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI P++EH A +  +L RA  + EA  F+SKM +KP+A VW  LL    +  +  
Sbjct: 399 MSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTM 458

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   + E+EP + G++++++N+YS +GRW+EA  +R+ M++ G+ K P  SWIE  
Sbjct: 459 LAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVK 518

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLM 450
             L  FVA D S     +   + E L  ++
Sbjct: 519 NKLHVFVAHDRSHPCCIECSTLSEHLAAII 548



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 167/371 (45%), Gaps = 53/371 (14%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVH 65
           +SW   I   +  G + +  +LF  M      R     ++ + L++C        G  +H
Sbjct: 15  LSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLH 74

Query: 66  NFVIESHIKMDLWICNALIGMYAK--CG-----------------SLDYARALLDEMSDK 106
              I S    D +  NAL+ +Y K  C                  +L+  R + DEM ++
Sbjct: 75  ALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIER 134

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D VS+                               N ++ G  +  RH   L LVR+M 
Sbjct: 135 DVVSW-------------------------------NTLVLGCAEEGRHHEALVLVRKMW 163

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G RP++ T+SS+  +F+  +++K G E+HG+AV+N +D +++V +++ID YA      
Sbjct: 164 REGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTD 223

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            + +VFD    R  I+W ++++  A +G   +A+ +F  ML  G++P PVTF++++  C 
Sbjct: 224 YSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCG 283

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
           +   + +     +A   + G + +V   + ++ +  +   IS A     +M   P    W
Sbjct: 284 NLASL-RFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRM-CSPDVVSW 341

Query: 347 GALLYGASISG 357
            A++ G ++ G
Sbjct: 342 TAMIMGYALHG 352


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 285/507 (56%), Gaps = 46/507 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA---CGQ--- 54
           M+ R  VSWN+M++GY+          +FR M+ S  L P+ VT  S+L +   CGQ   
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFR-MMGSAGLEPNLVTWTSLLSSHARCGQHVE 254

Query: 55  --------------------------SSDIVF---GMEVHNFVIESHIKMDLWICNALIG 85
                                     S D+     G  +H +V++   +  L++ N+LI 
Sbjct: 255 TMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLIC 314

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF--------QVMKRP 137
           +Y K G+++ AR L  E+  K+ VS++A+IS Y   G+ ++A  +F          M RP
Sbjct: 315 LYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRP 374

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            + +W+AVI G     + E  L+L R MQ + V+ N+VTI+S+ S+ +  + L  G+EIH
Sbjct: 375 NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIH 434

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
           G+ V++  D NI V   +I+ Y K+G       VF++ + + LI W  +++ Y  HG   
Sbjct: 435 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 494

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
            A+  F++M+ +G +PD VTF AVLSAC+H+GLV +  ++F+ M  ++ ++P +EHYACM
Sbjct: 495 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 554

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           V +L RA  + EA++ V  MPV+P+A VWGALL    +  + E+ +     +F +  E  
Sbjct: 555 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 614

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE 437
           G+Y++++N+Y+ +GRW+++ +VR   K  GL K PG+SWI+    +  F A +T   + E
Sbjct: 615 GSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELE 674

Query: 438 QIYLILERLLGLMREEGYVLLDEVEEE 464
           ++Y IL+ L   M  EGY+   +++EE
Sbjct: 675 EVYRILKDLGLQMEVEGYI--PDIDEE 699



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 159/305 (52%), Gaps = 9/305 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WNS++      G+ EE   ++  M    V   DG T   V++AC           V
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGV-SADGFTFPLVIRACALMGSRKLCRSV 157

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V+E   + +L + N L+GMY K G +D AR + + M+ +  VS++ ++SGY ++   
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 125 EKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             A ++F++M      P L TW +++S   +  +H   ++L   M+  G+   A  ++ +
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+    +    GK IHGY VK  ++  ++V  ++I  Y K G ++ A+ +F   K +++
Sbjct: 278 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 337

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG----IQPDPVTFTAVLSACAHSGLVDKAWD 296
           + W A+IS+YA  G   +A ++F ++        ++P+ V+++AV+   A  G  ++A +
Sbjct: 338 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 397

Query: 297 IFNAM 301
           +F  M
Sbjct: 398 LFRRM 402



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 13/321 (4%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGV 170
           ++S Y   G V  A  +F+V      S    WN+++   V +   E  L++   M+  GV
Sbjct: 72  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             +  T   +    +   + K  + +HG+ V+  +  N++V   ++  Y K G +  A++
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VF+R   RS + W  ++S YA + D   A  +F  M + G++P+ VT+T++LS+ A  G 
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWG 347
             +  ++F  M  + GI  + E  A ++ V        E      +V K   +    V  
Sbjct: 252 HVETMELFGRMRMR-GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKN 310

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV---REQMK 404
           +L+      G+V   + +     EI+ +N  ++  + + Y+  G  DEA  +    E+  
Sbjct: 311 SLICLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTD 367

Query: 405 ESGLAKIPGRSWIECSGGLQS 425
           E  + +    SW    GG  S
Sbjct: 368 EYPMVRPNVVSWSAVIGGFAS 388



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           +L R +     +PN   +     L    S     ++IH   +     R+ ++A  ++  Y
Sbjct: 17  NLSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVY 76

Query: 220 AKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           A  G +  AQRVF+        +L++W +I+ A  AHG   +A+ ++  M   G+  D  
Sbjct: 77  AGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGF 136

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           TF  V+ ACA  G   K     +    + G Q ++     ++G+  +  R+ +A +   +
Sbjct: 137 TFPLVIRACALMG-SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195

Query: 337 MPVKPSAKVWGALLYGASISGD 358
           M V+ S   W  ++ G +++ D
Sbjct: 196 MAVR-SCVSWNTMVSGYALNYD 216


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 283/490 (57%), Gaps = 40/490 (8%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + +WN++++G ++ G   E   + R ML+   L+PD  ++ S+L++      +  GME H
Sbjct: 287 LATWNAVLSGCARNGRDREAFGVVRIMLDQG-LQPDSSSMSSLLKSVASLGLLAHGMEAH 345

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F + + ++ D++   A + MYAKCG L+YA+ + D +  ++  +++++++GY   G  +
Sbjct: 346 GFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFD 405

Query: 126 KAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI- 180
            A+DL + MKR    P ++TWN +I+G   N +    + L+R+++A G+ PN V+ +S+ 
Sbjct: 406 HALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLLRQIKAIGLTPNVVSWTSLI 465

Query: 181 ------------FSLFSHFSN----------------------LKGGKEIHGYAVKNRYD 206
                       F  F+                          LK GKE+H +A++  YD
Sbjct: 466 SGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYD 525

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           R++ V TA+ID Y+K+G L  AQR+F+R +  +L+   A+++  AAHG   +A++LF++M
Sbjct: 526 RDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIALFHDM 585

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
            N+G++PD +TFTA+L+AC    LV + W+ F+ M  +YG+ P+VE+YACMV +L+R   
Sbjct: 586 CNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLLARCGY 645

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + EA +F++K P K  + +WGALL G ++ G++ L +     LF++EP N+ NY+ M +L
Sbjct: 646 LDEAMDFINKSPFKSVSSLWGALLTGCTLHGNLALAEAAARKLFKLEPYNSANYLQMVSL 705

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y     +DEA+ ++  MK   L   PG SWI+    +  F  +      + +IY  L RL
Sbjct: 706 YEHEQMFDEAESLKYAMKARALDTRPGWSWIQIEQSIHVFEVEGKPHPDTAEIYEELIRL 765

Query: 447 LGLMREEGYV 456
           +  +R+ GYV
Sbjct: 766 VFQIRKSGYV 775



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 203/416 (48%), Gaps = 19/416 (4%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN  +A  ++   + +  A F EM    V  PDG      L ACG++     G  VH 
Sbjct: 149 VLWNKRVAMLAEAEEWGDAIAAFGEMRARGVA-PDGYACARALHACGRAGAPREGQAVHA 207

Query: 67  FVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
              ++ H+     +   L GMYA+   +  AR +L E  D   V+++ +++     G V+
Sbjct: 208 HAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGLVD 266

Query: 126 KAMDLFQVMKR-------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            A+DL + M R       P L+TWNAV+SG  +N R      +VR M   G++P++ ++S
Sbjct: 267 DALDLAERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMS 326

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +    L  G E HG+ ++N+ + ++Y  TA +D YAK G L  AQ+VFD  + R
Sbjct: 327 SLLKSVASLGLLAHGMEAHGFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELR 386

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++  W ++++ YA  G    A+ L  EM  N + PD  T+  +++  + +G   +A  + 
Sbjct: 387 NITTWNSLVAGYANAGQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLL 446

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASI 355
             +    G+ P+V  +  ++          ++  F ++M    V+PS      LL   + 
Sbjct: 447 RQIKA-IGLTPNVVSWTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAG 505

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
              ++ GK +  H F +      + ++   + ++YS++G    A R+ E+++E+ L
Sbjct: 506 LALLKKGKEL--HCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNL 559



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + ++VS N+M+ G +  G   E  ALF +M NS  L+PD +T  ++L AC     +  
Sbjct: 554 IQENNLVSSNAMLTGLAAHGQGHEAIALFHDMCNSG-LKPDSITFTALLTACRSMDLVTE 612

Query: 61  GMEVHNFVIESHIKMDLWICN--ALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIISG 117
           G E  +  +ES   +   + N   ++ + A+CG LD A   +++   K   S + A+++G
Sbjct: 613 GWEYFD-TMESRYGVTPTVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSLWGALLTG 671

Query: 118 YMVHG 122
             +HG
Sbjct: 672 CTLHG 676


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 176/467 (37%), Positives = 269/467 (57%), Gaps = 18/467 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--I 58
           M +R++VSWN++I  + Q    +E + LF  M    V+     T+V+ L   G+  D  +
Sbjct: 186 MPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVI--SWTTMVAGLSKNGRIDDARL 243

Query: 59  VFG-MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +F  M V N V         W  N +I  YA+   LD A  L ++M +++  S++ +I+G
Sbjct: 244 LFDKMPVRNVVS--------W--NTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITG 293

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVT 176
           ++ +G +E+A+D F  M    + TW AVISG VQ+ R E  L +  EMQA+  V+PN  T
Sbjct: 294 FIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGT 353

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--R 234
             S+    S  + L  G++IH    K  Y     V +A+I+ Y+K G L  A+++FD   
Sbjct: 354 FVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGS 413

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R ++ W  +I+AYA HG   KA+SLF+EM   G +PD VT+ A+LSAC+H+GLVD+ 
Sbjct: 414 IGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEG 473

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F  +     I+   +H+ C+V +  RA R+ EA +F+  + VKPSA VW ALL G +
Sbjct: 474 LKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCN 533

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           + G ++LGK   + L E EPEN G Y++++N+Y+  G+W EA  VR +MK+ GL K PG 
Sbjct: 534 VHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGC 593

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
           SWIE    +  FV  D S  + E IYL+L  L   M++ G+ L +++
Sbjct: 594 SWIEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDL 640



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 56/371 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW ++I GY + G  EE K LF         R D +  V              
Sbjct: 92  MPDRDVVSWTAVITGYIKCGMIEEAKTLFD--------RNDAIKNVVT------------ 131

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                            W   AL+  Y +   ++ AR L D M  K+ +S++ +I GY  
Sbjct: 132 -----------------W--TALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYAR 172

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G++++A+DLF+ M    + +WN VI+  +Q  R +   +L   M    V    ++ +++
Sbjct: 173 KGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTM 228

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +  S     K G+      + ++   RN+     +I  YA+   L  A ++F++   R 
Sbjct: 229 VAGLS-----KNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERE 283

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W  +I+ +  +G   +AV  F +M N  +    VT+TAV+S     G  ++A  IF+
Sbjct: 284 LSSWNTMITGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFS 339

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWGALLYGASIS 356
            M     ++P+   +  ++G  S+   + E     + +SK   +  A V  AL+   S  
Sbjct: 340 EMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKC 399

Query: 357 GDVELGKFVCD 367
           G++EL + + D
Sbjct: 400 GELELARKIFD 410



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 43/258 (16%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L S FS  +   +I         + N+  +  +I    K G +  A++VF+    R ++ 
Sbjct: 40  LSSQFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVS 99

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS------------------- 283
           WTA+I+ Y   G   +A +LF+   N+ I+ + VT+TA++S                   
Sbjct: 100 WTAVITGYIKCGMIEEAKTLFDR--NDAIK-NVVTWTALVSGYVRWNRIEEARRLFDAMP 156

Query: 284 ------------ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
                         A  G +D+A D+F  M      + +V  +  ++    + RR+ EA 
Sbjct: 157 VKNVISWNTMIEGYARKGWIDQALDLFEXMP-----ERNVVSWNTVITAFMQRRRVDEAQ 211

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
           E  ++MP +     W  ++ G S +G ++  + + D   ++   N  ++  M   Y+Q  
Sbjct: 212 ELFNRMPERDVIS-WTTMVAGLSKNGRIDDARLLFD---KMPVRNVVSWNTMIIGYAQNM 267

Query: 392 RWDEADRVREQMKESGLA 409
           R DEA ++ EQM E  L+
Sbjct: 268 RLDEAFKLFEQMPERELS 285


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 275/524 (52%), Gaps = 71/524 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D+V+WN MI+G  Q G  ++   LF +M  S  L+PD VT+ S+L A  + +    
Sbjct: 309 MPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSG-LQPDSVTLASLLPALTELNGFKQ 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +++ +   +D+++ +AL+ +Y KC  +  A+ + D     D V  S +ISGY++
Sbjct: 368 GKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVL 427

Query: 121 ---------------------------------------------HGFVEK--------- 126
                                                        HG+V K         
Sbjct: 428 NRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYV 487

Query: 127 ---AMDLFQVMKRPGLS-------------TWNAVISGLVQNNRHEAVLDLVREMQASGV 170
               MD++    R  LS             TWN++IS   QN   E  LDL R+M   GV
Sbjct: 488 ESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGV 547

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           + N VTISSI S  +    +  GKEIHG  +K     +++  +A+ID Y K G L  A R
Sbjct: 548 KYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALR 607

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VF+    ++ + W +IISAY AHG   ++V L   M   G + D VTF A++SACAH+G 
Sbjct: 608 VFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQ 667

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V +   +F  M+ +Y I+P VEH +CMV + SRA ++ +A +F++ MP KP A +WGALL
Sbjct: 668 VQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALL 727

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
           +   +  +VEL +     LF+++P N G Y++M+N+ + AGRWD   ++R  MK+  + K
Sbjct: 728 HACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQK 787

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           IPG SW++ +     FVA D +   SE+IY+ L+ L+  +++EG
Sbjct: 788 IPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELKQEG 831



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 176/365 (48%), Gaps = 44/365 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V WN M+ GY + G       LFR M  S    P+  T+   L  C   +D++ 
Sbjct: 208 MDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGC-DPNFATLACFLSVCAAEADLLS 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H   ++  ++ ++ + N L+ MYAKC  L                           
Sbjct: 267 GVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCL--------------------------- 299

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E+A  LF +M R  L TWN +ISG VQN   +  L L  +MQ SG++P++VT++S+
Sbjct: 300 ----EEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASL 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  +  K GKEIHGY V+N    ++++ +A++D Y K   +  AQ VFD  K   +
Sbjct: 356 LPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDV 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-- 298
           +I + +IS Y  +  +  AV +F  +L  GI+P+ V   + L ACA    +    ++   
Sbjct: 416 VIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGY 475

Query: 299 ---NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
              NA  G+  ++ +      ++ + S+  R+  +    SKM  K     W +++   + 
Sbjct: 476 VLKNAYEGRCYVESA------LMDMYSKCGRLDLSHYMFSKMSAKDEV-TWNSMISSFAQ 528

Query: 356 SGDVE 360
           +G+ E
Sbjct: 529 NGEPE 533



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 32/279 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + WN +I G++  G +      + +M   P   RPDG T+  V+++C     +  G  VH
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVH 170

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                  +  D+++ +ALI MYA                                 G ++
Sbjct: 171 RTTRALGLDRDMYVGSALIKMYADA-------------------------------GLLD 199

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A ++F  M       WN ++ G V+     + + L R M+ASG  PN  T++   S+ +
Sbjct: 200 GAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCA 259

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             ++L  G ++H  AVK   +  + VA  ++  YAK   L  A R+F       L+ W  
Sbjct: 260 AEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNG 319

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +IS    +G    A+ LF +M  +G+QPD VT  ++L A
Sbjct: 320 MISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPA 358



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 34/334 (10%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P    ++++L+ C   S +  G+ +H   + S                           L
Sbjct: 34  PCAYRLLALLRGCVAPSHLPLGLRIHARAVTS--------------------------GL 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS---TWNAVISGLVQNNRHE 156
           LD          + ++  Y++      A+ +F  + R   +    WN +I G      H 
Sbjct: 68  LDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHR 127

Query: 157 AVLDLVREMQA--SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
             +    +M A  S  RP+  T+  +    +    L  G+ +H        DR++YV +A
Sbjct: 128 LAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSA 187

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I  YA  G L GA+ VFD    R  ++W  ++  Y   GD + AV LF  M  +G  P+
Sbjct: 188 LIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPN 247

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
             T    LS CA    +     + + ++ +YG++P V     +V + ++ + + EA    
Sbjct: 248 FATLACFLSVCAAEADLLSGVQL-HTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLF 306

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELG-KFVCD 367
             MP +     W  ++ G   +G V+   +  CD
Sbjct: 307 GLMP-RDDLVTWNGMISGCVQNGLVDDALRLFCD 339


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 260/462 (56%), Gaps = 39/462 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW +MI G+ +     E    F EM  S V   + +TVVSVL+A  ++ D+ FG  
Sbjct: 167 KDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVA-ANEMTVVSVLKATRKAEDVRFGRS 225

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H F +E+  ++ D++I ++L+ MY KCG  D A+ + DEM  ++ V             
Sbjct: 226 IHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVV------------- 272

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             TW A+I+G VQ    E  + +  EM  S V PN  T+SS+ S
Sbjct: 273 ------------------TWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLS 314

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H   L  G+ +H Y +KN  + N  V T +ID YAK G L  A  VF+R + +++  
Sbjct: 315 ACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYT 374

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I+ +AAHG A  AV LF+ ML++ + P+ VTF  VLSACAH GLV++   +F +M 
Sbjct: 375 WTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMK 434

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            ++ ++P  +HYACMV +  R   + EA   + +MP++P+  VWGAL     I  D ELG
Sbjct: 435 ERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELG 494

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K+    + +++P ++G Y ++ANLYS++  WD+  RVR+QMK+  + K PG SWIE  G 
Sbjct: 495 KYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGK 554

Query: 423 LQSFVAKDTSGD-KSEQIYLILERLLGLMREEGYVLLDEVEE 463
           L  F+A D     +S+ +Y  L+ +   MR     L DE+E+
Sbjct: 555 LHEFIAFDDKKPLESDDLYKTLDNVGVQMR-----LPDELED 591



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 181/412 (43%), Gaps = 71/412 (17%)

Query: 29  FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
           +R+M  + V+ P   T   +L+A  +  D     + H  +++     DL++ N+LI  Y+
Sbjct: 92  YRQMRRNGVV-PSRHTFPPLLKAVFKLRD-ANPFQFHAHILKFGFDSDLFVRNSLISGYS 149

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
            CG  ++   + D   DKD VS++A+I G++ +    +AM  F  MKR            
Sbjct: 150 NCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKR------------ 197

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDR 207
                              SGV  N +T+ S+        +++ G+ IHG+ ++  R   
Sbjct: 198 -------------------SGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRC 238

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           ++++ ++++D Y K G    AQ+VFD    R+++ WTA+I+ Y       K + +F EML
Sbjct: 239 DVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEML 298

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
            + + P+  T ++VLSACAH G + +      + I N++     +  ++  +    G L 
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLE 358

Query: 323 RA----RRISE---------------------ATEFVSKM---PVKPSAKVWGALLYGAS 354
            A     R+ E                     A +    M    V P+   +  +L   +
Sbjct: 359 EAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACA 418

Query: 355 ISGDVELGK---FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             G VE G+         F +EP+   +Y  M +L+ + G  +EA  + E+M
Sbjct: 419 HGGLVEEGRRLFLSMKERFNLEPK-ADHYACMVDLFGRKGLLEEAKALIERM 469



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 36/258 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++V+W ++IAGY QG  +E+   +F EML S V  P+  T+ SVL AC     +  
Sbjct: 266 MPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHR 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +VI++ I+++  +   LI  YAKCG L+ A  + + + +K+  +++A+I+G+  
Sbjct: 325 GRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAA 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+   A+DLF                                 M +S V PN VT   +
Sbjct: 385 HGYAIGAVDLFHT-------------------------------MLSSHVSPNEVTFIVV 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S  +H   ++ G+ +   ++K R++          ++D + + G L  A+ + +R    
Sbjct: 414 LSACAHGGLVEEGRRLF-LSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472

Query: 239 SL-IIWTAIISAYAAHGD 255
               +W A+  +   H D
Sbjct: 473 PTNAVWGALFGSCLIHKD 490



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 111/248 (44%), Gaps = 6/248 (2%)

Query: 127 AMDLFQVMKRPGLSTWNAVI---SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           A  L   ++ P +  W++++   SG V  NR  + L   R+M+ +GV P+  T   +   
Sbjct: 55  ARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSY-RQMRRNGVVPSRHTFPPLLKA 113

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +     + H + +K  +D +++V  ++I  Y+  G      RVFD  + + ++ W
Sbjct: 114 VFKLRD-ANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSW 172

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+I  +  +  + +A++ F EM  +G+  + +T  +VL A   +  V     I      
Sbjct: 173 TAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLE 232

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
              ++  V   + +V +  +     +A +   +MP + +   W AL+ G       E G 
Sbjct: 233 AGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSR-NVVTWTALIAGYVQGRCFEKGM 291

Query: 364 FVCDHLFE 371
           FV + + +
Sbjct: 292 FVFEEMLK 299


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 176/467 (37%), Positives = 269/467 (57%), Gaps = 18/467 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--I 58
           M +R++VSWN++I  + Q    +E + LF  M    V+     T+V+ L   G+  D  +
Sbjct: 186 MPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVI--SWTTMVAGLSKNGRIDDARL 243

Query: 59  VFG-MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +F  M V N V         W  N +I  YA+   LD A  L ++M +++  S++ +I+G
Sbjct: 244 LFDKMPVRNVVS--------W--NTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITG 293

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVT 176
           ++ +G +E+A+D F  M    + TW AVISG VQ+ R E  L +  EMQA+  V+PN  T
Sbjct: 294 FIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGT 353

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--R 234
             S+    S  + L  G++IH    K  Y     V +A+I+ Y+K G L  A+++FD   
Sbjct: 354 FVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGS 413

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R ++ W  +I+AYA HG   KA+SLF+EM   G +PD VT+ A+LSAC+H+GLVD+ 
Sbjct: 414 IGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEG 473

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F  +     I+   +H+ C+V +  RA R+ EA +F+  + VKPSA VW ALL G +
Sbjct: 474 LKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCN 533

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           + G ++LGK   + L E EPEN G Y++++N+Y+  G+W EA  VR +MK+ GL K PG 
Sbjct: 534 VHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGC 593

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
           SWIE    +  FV  D S  + E IYL+L  L   M++ G+ L +++
Sbjct: 594 SWIEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDL 640



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 56/371 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW ++I GY + G  EE K LF         R D +  V              
Sbjct: 92  MPDRDVVSWTAVITGYIKCGMIEEAKTLFD--------RNDAIKNVVT------------ 131

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                            W   AL+  Y +   ++ AR L D M  K+ +S++ +I GY  
Sbjct: 132 -----------------W--TALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYAR 172

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G++++A+DLF+ M    + +WN VI+  +Q  R +   +L   M    V    ++ +++
Sbjct: 173 KGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTM 228

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +  S     K G+      + ++   RN+     +I  YA+   L  A ++F++   R 
Sbjct: 229 VAGLS-----KNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERE 283

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W  +I+ +  +G   +AV  F +M N  +    VT+TAV+S     G  ++A  IF+
Sbjct: 284 LSSWNTMITGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFS 339

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWGALLYGASIS 356
            M     ++P+   +  ++G  S+   + E     + +SK   +  A V  AL+   S  
Sbjct: 340 EMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKC 399

Query: 357 GDVELGKFVCD 367
           G++EL + + D
Sbjct: 400 GELELARKIFD 410



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 43/258 (16%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L S FS  +   +I         + N+  +  +I    K G +  A++VF+    R ++ 
Sbjct: 40  LSSQFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVS 99

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS------------------- 283
           WTA+I+ Y   G   +A +LF+   N+ I+ + VT+TA++S                   
Sbjct: 100 WTAVITGYIKCGMIEEAKTLFDR--NDAIK-NVVTWTALVSGYVRWNRIEEARRLFDAMP 156

Query: 284 ------------ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
                         A  G +D+A D+F  M      + +V  +  ++    + RR+ EA 
Sbjct: 157 VKNVISWNTMIEGYARKGWIDQALDLFEKMP-----ERNVVSWNTVITAFMQRRRVDEAQ 211

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
           E  ++MP +     W  ++ G S +G ++  + + D   ++   N  ++  M   Y+Q  
Sbjct: 212 ELFNRMPERDVIS-WTTMVAGLSKNGRIDDARLLFD---KMPVRNVVSWNTMIIGYAQNM 267

Query: 392 RWDEADRVREQMKESGLA 409
           R DEA ++ EQM E  L+
Sbjct: 268 RLDEAFKLFEQMPERELS 285


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 259/457 (56%), Gaps = 34/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D+VSWNSMI+GYS+ G+  +   LF EM ++    PD +T+VS+L ACG   D+  
Sbjct: 187 ISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAG-FEPDEMTLVSILGACGDLGDLGL 245

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  FV+E+ + ++ ++ +ALIGMY KCG L  AR + D M  KD V           
Sbjct: 246 GSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVV----------- 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNA+I+G  QN   +  + L   M+ SGV P+ +T+  +
Sbjct: 295 --------------------TWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGV 334

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK +  YA +     +IYV+TA+ID YAK G L  A RVF+    ++ 
Sbjct: 335 LSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNE 394

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W A+ISA A HG   +++SLF  M   G  ++P+ ++F  VLSAC H+GLVD+   +F
Sbjct: 395 VSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLF 454

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + MS  +G+ P +EH++CMV +L+RA  + EA +F+ KMP KP   V GALL       +
Sbjct: 455 DLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRN 514

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++ + V   L E+EP N+GNYII + +++   RWD++ R+R  M++ G+ K PG SWIE
Sbjct: 515 VDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIE 574

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
               +  F A D     S+ +  ++  L   M+ EGY
Sbjct: 575 IENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGY 611



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 35/321 (10%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           +RP+  T   V  AC     +  G   H+ V++S +  D  + ++LI MY++CG L  AR
Sbjct: 122 IRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCAR 181

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + DE+S+KD VS++++ISGY   G+   A+ LF                          
Sbjct: 182 RVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFG------------------------- 216

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
                 EM+ +G  P+ +T+ SI        +L  G  I G+ V+N  D N +V +A+I 
Sbjct: 217 ------EMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIG 270

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y K G L  A+RVFDR   + ++ W A+I+ YA +G + +A+ LF+ M  +G+ PD +T
Sbjct: 271 MYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKIT 330

Query: 278 FTAVLSACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
              VLSACA  G +D   W   +  + + G+Q  +     ++ + ++   + +A      
Sbjct: 331 LVGVLSACASIGALDFGKW--LDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFED 388

Query: 337 MPVKPSAKVWGALLYGASISG 357
           MP K     W A++   +  G
Sbjct: 389 MPQKNEVS-WNAMISALAFHG 408



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 38/261 (14%)

Query: 118 YMVHGFVE-----KAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
           +++H F++      A  LF  +  P    +N +I GL     +    ++   +M+  G+R
Sbjct: 64  FLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIR 123

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           PN  T   +F   ++   L  G+  H   +K+    + +V  ++I  Y++ G L  A+RV
Sbjct: 124 PNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRV 183

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG-- 289
           FD    + L+ W ++IS Y+  G A  AV LF EM + G +PD +T  ++L AC   G  
Sbjct: 184 FDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDL 243

Query: 290 ---------LVDKAWD----IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
                    +V+   D    + +A+ G YG            G LS ARR+ +       
Sbjct: 244 GLGSWIEGFVVENEMDLNSFVGSALIGMYG----------KCGDLSSARRVFDRM----- 288

Query: 337 MPVKPSAKVWGALLYGASISG 357
             VK     W A++ G + +G
Sbjct: 289 --VKKDVVTWNAMITGYAQNG 307


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 262/457 (57%), Gaps = 27/457 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++V+WNS+I  Y Q G   E   +F  M++S  L PD VT+ SV+ AC     +  
Sbjct: 208 MIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG-LEPDEVTLASVVSACASLCALKE 266

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G+++H  V++++  + DL + NAL+ MYAKC  ++ AR + D MS ++ VS ++++SGY 
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYA 326

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V+ A  +F  M +  + +WNA+I+G  QN  +E  L L R ++   + P   T   
Sbjct: 327 RAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYT--- 383

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                  F NL                 +I+V  ++ID Y K G +    RVF++ K R 
Sbjct: 384 -------FGNL--------------LKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERD 422

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            + W AII  YA +G  ++A+ +F +ML  G +PD VT   VL AC+H+GLV++    F 
Sbjct: 423 CVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFF 482

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M  ++G+ P  +HY CMV +L RA  ++EA   +  MPV P A VWG+LL    + G++
Sbjct: 483 SME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNI 541

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+GK   + L EI+P N+G Y++++N+Y++ GRW +  RVR+ M++ G+ K PG SWIE 
Sbjct: 542 EMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEV 601

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
              +  F+ KD S    +QIY +L+ L   M+  GY+
Sbjct: 602 ESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYI 638



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 187/369 (50%), Gaps = 4/369 (1%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+      +L +C +S        VH  ++ +   M+++I N LI +Y KC  LD AR L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D M  ++  +++++IS     GF+++A  LF  M  P   +WN+++SG  Q++R E  L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           +   +M       N  +  S  S  +   +L  G ++H    K+RY  ++Y+ +A+ID Y
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           +K G +  A+ VF     R+L+ W ++I+ Y  +G AS+A+ +F  M+++G++PD VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           +V+SACA    + +   I   +      +  +     +V + ++  +++EA     +M +
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           +       +++ G + +  V+  +F+     ++   N  ++  +   Y+Q G  +EA R+
Sbjct: 313 RNVVSE-TSMVSGYARAASVKAARFM---FSKMTQRNVVSWNALIAGYTQNGENEEALRL 368

Query: 400 REQMKESGL 408
              +K   +
Sbjct: 369 FRLLKRESI 377



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 165/346 (47%), Gaps = 69/346 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-------LNSPV---------------- 37
           M +R+  +WNS+I+  ++ GF +E   LF  M        NS V                
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 38  ---LRPDGV----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
               R D +    +  S L AC    D+  G +VH  V +S    D+++ +ALI MY+KC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+  A  +   M +++ V+++++I+ Y  +G   +A+++F                   
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVF------------------- 236

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNI 209
                      VR M  SG+ P+ VT++S+ S  +    LK G +IH   VK N++  ++
Sbjct: 237 -----------VR-MMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            +  A++D YAK   ++ A+RVFDR   R+++  T+++S YA       A  +F++M   
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKM--- 341

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             Q + V++ A+++    +G  ++A  +F  +  +  I P+  HY 
Sbjct: 342 -TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRE-SIWPT--HYT 383


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 271/471 (57%), Gaps = 18/471 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD +SWN+MI+GY+QGG   + + LF E   SP    D  T  +++    Q+     
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDE---SPT--RDVFTWTAMVSGYVQN----- 279

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           GM  E   F  E   K ++   NA+I  Y +   +D AR L + M  ++  S++ +I+GY
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSY-NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY 338

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G + +A   F +M +    +W A+I+G  Q+  +E  L++  E++  G   N  T  
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFG 398

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
              S  +  + L+ GK+IHG AVK  Y    +V  A++  Y K G +  A   F+  + +
Sbjct: 399 CALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK 458

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W  +++ YA HG   +A+++F  M   G++PD +T   VLSAC+H+GL+D+  + F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M+  YG+ P+ +HY CM+ +L RA R+ EA + +  MP +P A  WGALL  + I G+
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG+   + +F++EP+N+G Y++++NLY+ +GRW +AD++R +M++ G+ K+PG SW+E
Sbjct: 579 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F   D S  + E+IY  LE L   MREEGYV     +L +VEEE
Sbjct: 639 VQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEE 689



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 17/286 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWNS+++GY+Q G+ +E + +F  M     +  +G+    V     + + ++F
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                    ES    DL   N L+G + +   L  AR L D+M  +D +S++ +ISGY  
Sbjct: 197 ---------ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQ 247

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A  LF       + TW A++SG VQN     +LD  +         N V+ +++
Sbjct: 248 GGGLSQARRLFDESPTRDVFTWTAMVSGYVQN----GMLDEAKTFFDEMPEKNEVSYNAM 303

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +     +   +E+     ++   RNI     +I  Y + G +  A++ FD    R  
Sbjct: 304 IAGYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC 359

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + W AII+ YA  G   +A+++F E+  +G   +  TF   LS CA
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 165/363 (45%), Gaps = 29/363 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI+ WN  I+ + + G  +    +F  M      R   V+  +++    ++S       +
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMP-----RRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            + + E     DL+  N ++  Y +   L  AR L D M +KD VS+++++SGY  +G+V
Sbjct: 103 FDQMPER----DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYV 158

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A ++F  M      +WN +++  V N R E    L      S    + ++ + +   F
Sbjct: 159 DEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCLMGGF 214

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                L   +    +       R+      +I  YA+ G L  A+R+FD    R +  WT
Sbjct: 215 VRKKKLGDAR----WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWT 270

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++S Y  +G   +A + F+EM     + + V++ A+++    +  +D A ++F +M  +
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LG 362
                ++  +  M+    +   I++A +F   MP +     W A++ G + SG  E  L 
Sbjct: 327 -----NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS-WAAIIAGYAQSGHYEEALN 380

Query: 363 KFV 365
            FV
Sbjct: 381 MFV 383



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 134/304 (44%), Gaps = 54/304 (17%)

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           + D D + ++  IS +M +G  + A+ +F  M R    ++NA+ISG ++N++     +L 
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            +M                                        +R+++    ++  Y + 
Sbjct: 104 DQMP---------------------------------------ERDLFSWNVMLTGYVRN 124

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
             L  A+R+FD    + ++ W +++S YA +G   +A  +F+ M     + + +++  +L
Sbjct: 125 CRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLL 180

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
           +A  H+G +++A  +F + S    I      + C++G   R +++ +A     KMPV+  
Sbjct: 181 AAYVHNGRIEEACLLFESKSDWDLIS-----WNCLMGGFVRKKKLGDARWLFDKMPVR-D 234

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVRE 401
           A  W  ++ G +  G +   +     LF+  P  +   +  M + Y Q G  DEA    +
Sbjct: 235 AISWNTMISGYAQGGGLSQAR----RLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 402 QMKE 405
           +M E
Sbjct: 291 EMPE 294


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 262/457 (57%), Gaps = 33/457 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +K+D+VSW ++I G  + G   E    F EM +S V   D VT+VSVL A     D+ FG
Sbjct: 165 AKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGV-EVDEVTIVSVLCAAAMLRDVWFG 223

Query: 62  MEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             VH F +ES  +  D+++ +AL+ MY+KCG                             
Sbjct: 224 RWVHGFYVESGRVIWDVYVGSALVDMYSKCG----------------------------- 254

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             + + A+ +F  M    L +W A+I+G VQ NR++  L + +EM   G+ PN  T++S 
Sbjct: 255 --YCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSA 312

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L  G+ +H Y  +++   N  + TA++D Y+K G +  A  VF++   + +
Sbjct: 313 LTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDV 372

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTA+I+  A  GDA  +++LF++M+ + +QP+ VTF  VLSACAH GLVD+  ++F  
Sbjct: 373 YPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRL 432

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P+V+HY CMV +L RA R+ EA +F+  MP++P+  VWGAL  G  I    E
Sbjct: 433 MICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFE 492

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ + +HL +++P ++G YI++ANLYS+  +W+ A  VR  MK  G+ K PG SWIE +
Sbjct: 493 LGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVN 552

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL 457
           G +  F+A D S  +S  +Y++LE +   ++   Y L
Sbjct: 553 GVIHEFIAFDKSHTESINVYMMLESVSAQLKLATYAL 589



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 201/441 (45%), Gaps = 83/441 (18%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGMEV 64
           I  WN++I G+S     +     +  + N  V+ PD  T   +L+A  +  ++  F    
Sbjct: 69  IFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVI-PDRHTFPLLLKAFSKLRNENPFQFYA 127

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++  +  D ++ N+L+  +A CG +D +R L  E + KD VS++A+I+G + +G  
Sbjct: 128 H--IVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRA 185

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A++ F                                EM++SGV  + VTI S+    
Sbjct: 186 VEALECFV-------------------------------EMRSSGVEVDEVTIVSVLCAA 214

Query: 185 SHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           +   ++  G+ +HG+ V++ R   ++YV +A++D Y+K G+   A +VF+    R+L+ W
Sbjct: 215 AMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSW 274

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMS 302
            A+I+ Y       +A+ +F EM+  GI+P+  T T+ L+ACA  G +D+  W       
Sbjct: 275 GALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDR 334

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD---- 358
            + G+   +     +V + S+   + EA     K+P K     W A++ G ++ GD    
Sbjct: 335 SKLGLNSKLG--TALVDMYSKCGCVDEALLVFEKLPAK-DVYPWTAMINGLAMRGDALSS 391

Query: 359 -----------------------------------VELGKF-VCDHLFEIEPENTGNYII 382
                                              +EL +  +CD  + +EP N  +Y  
Sbjct: 392 LNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICD--YRLEP-NVDHYGC 448

Query: 383 MANLYSQAGRWDEADRVREQM 403
           M +L  +AGR +EA +  E M
Sbjct: 449 MVDLLGRAGRLEEAIKFIESM 469



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 123/277 (44%), Gaps = 38/277 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSW ++IAGY Q   Y+E   +F+EM+   +  P+  TV S L AC Q   +  
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGI-EPNQSTVTSALTACAQLGSLDQ 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V  S + ++  +  AL+ MY+KCG +D A  + +++  KD   ++A+I+G  +
Sbjct: 325 GRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAM 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    +++LF  M R                               S V+PN VT   +
Sbjct: 385 RGDALSSLNLFSQMIR-------------------------------SRVQPNGVTFLGV 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +H   +  G E+    + + R + N+     ++D   + G L  A +  +      
Sbjct: 414 LSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEP 473

Query: 240 LI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
              +W A+ S    H    KA  L   + N+ I+  P
Sbjct: 474 TPGVWGALFSGCMIH----KAFELGEHIGNHLIKLQP 506



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 129/295 (43%), Gaps = 46/295 (15%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF------------VEKAM 128
           ++++  + KCG+ D+ +          + +   I SG   H F            +   +
Sbjct: 9   HSILCCFHKCGTFDHLK----------QTTSILITSGLAHHTFFLSDILRSATKDLGYTL 58

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  +  P +  WN +I G   +++ + VL     ++  GV P+  T   +   FS   
Sbjct: 59  LLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           N +   + + + VK   D + +V  +++  +A  G++  ++R+F     + ++ WTA+I+
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDI 297
               +G A +A+  F EM ++G++ D VT  +VL A A           H   V+    I
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           ++   G           + +V + S+     +A +  ++MP +     WGAL+ G
Sbjct: 238 WDVYVG-----------SALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAG 280


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 258/469 (55%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW++MI GY      +E   LF +M+    + P  VT+ SVL+AC + +D+  
Sbjct: 271 MGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H ++I+    +D+ + N L+ MYAKCG +D A    D M+ KD VS          
Sbjct: 331 GRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS---------- 380

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                ++A++SG VQN      L + R MQ SG+ P+  T+  +
Sbjct: 381 ---------------------FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGV 419

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G   HGY +   +  +  +  A+ID Y+K G +  A+ VF+R     +
Sbjct: 420 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 479

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  Y  HG   +A+ LF+++L  G++PD +TF  +LS+C+HSGLV +    F+A
Sbjct: 480 VSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDA 539

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + I P +EH  CMV +L RA  I EA  F+  MP +P  ++W ALL    I  ++E
Sbjct: 540 MSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIE 599

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V   +  + PE+TGN+++++N+YS AGRWD+A  +R   K+ GL KIPG SWIE +
Sbjct: 600 LGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           G + +FV  D S  +  QI   LE LL  M+  GY      +  +VEEE
Sbjct: 660 GIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE 708



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 43/362 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+V+WN+MIAG S  G  ++   L  +M    +  P+  T+V VL   G++  +  
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGH 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + +       + +   L+ MYAKC  L YAR + D M  ++EVS+SA+I GY+ 
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVX 288

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A++LF  M                              +    + P  VT+ S+
Sbjct: 289 SDCMKEALELFDQM------------------------------ILKDAMDPTPVTLGSV 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G+++H Y +K     +I +   ++  YAK G +  A R FD    +  
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDS 378

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVDKAW 295
           + ++AI+S    +G+A+ A+S+F  M  +GI PD  T   VL AC+H      G     +
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I    +    I  +      ++ + S+  +IS A E  ++M  +     W A++ G  I
Sbjct: 439 LIVRGFATDTLICNA------LIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGI 491

Query: 356 SG 357
            G
Sbjct: 492 HG 493



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 33/282 (11%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++ WN +I  Y+  G ++    L+  ML+  V RP+  T   VL+AC     I  G+E+H
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGV-RPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           +      ++ D+++C AL+  YAKCG L                                
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGIL-------------------------------V 161

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A  LF  M    +  WNA+I+G       +  + L+ +MQ  G+ PN+ TI  +     
Sbjct: 162 EAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L  GK +HGY V+  +D  + V T ++D YAK   L  A+++FD    R+ + W+A
Sbjct: 222 EAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 246 IISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACA 286
           +I  Y       +A+ LF++M L + + P PVT  +VL ACA
Sbjct: 282 MIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 163/401 (40%), Gaps = 80/401 (19%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           + +L+AC QS  +    ++H   +++    D  + + L  +Y  C  +  AR L DE+ +
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                                          P +  WN +I     N   +  +DL   M
Sbjct: 72  -------------------------------PSVILWNQIIRAYAWNGPFDGAIDLYHSM 100

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              GVRPN  T   +    S    ++ G EIH +A     + +++V TA++D YAK G L
Sbjct: 101 LHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGIL 160

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL--- 282
             AQR+F     R ++ W A+I+  + +G    AV L  +M   GI P+  T   VL   
Sbjct: 161 VEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTV 220

Query: 283 ---SACAH--------------------SGLVDK---------AWDIFNAMSGQYGIQPS 310
               A  H                    +GL+D          A  IF+ M    G++  
Sbjct: 221 GEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVM----GVRNE 276

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVK----PSAKVWGALLYGASISGDVELGKFVC 366
           V  ++ M+G    +  + EA E   +M +K    P+    G++L   +   D+  G+ + 
Sbjct: 277 VS-WSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKL- 334

Query: 367 DHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMK 404
            H + I+     + ++   + ++Y++ G  D+A R  + M 
Sbjct: 335 -HCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN 374


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 256/469 (54%), Gaps = 7/469 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ +SW  MIAGY+Q G  EE   L +E+  S +L P   ++ S+  AC     +  
Sbjct: 379 MPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML-PSLSSLTSIFFACSNIVALET 437

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  ++   + + + CNALI MY KC +++YAR +   M  KD VS+++ ++  + 
Sbjct: 438 GTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +  +++A + F  M      +W  +IS      +    +   + M      PN+  ++ +
Sbjct: 498 NDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTIL 557

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +       K G++IH  A+K   D  + VA A+I  Y K G    ++R+FD  + R +
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDI 616

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  II+ YA HG   +A+ ++  M + G+ P+ VTF  +L+AC+H+GLVD+ W  F +
Sbjct: 617 FTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKS 676

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG+ P  EHYACMV +L R   +  A +F+  MP++P   +W ALL    I  + E
Sbjct: 677 MSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAE 736

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK   + LF IEP N GNY++++N+YS  G W E   VR+ MK+ G+ K PG SW +  
Sbjct: 737 IGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIK 796

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + SFV  D   ++ E+I   LE L  L++  GYV     +L +++EE
Sbjct: 797 DKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEE 845



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 213/477 (44%), Gaps = 82/477 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA--------- 51
           M +R++VSW  MI+GY +   + +   +F +M    +L PD     S L A         
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL-PDQSNFASALSAVKGLGNLDV 242

Query: 52  ----------CGQSSDIVFGMEVHNF------VIESHIK--------------------- 74
                      G   D+V G  + N       V+++ IK                     
Sbjct: 243 LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALS 302

Query: 75  ----MDLWIC-------------NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
               +D  I               ALI   A+CG +D AR L +++ +   VS++A+I+G
Sbjct: 303 HGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           YM +G V +A +LF  M      +W  +I+G  QN R E  L L++E+  SG+ P+  ++
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +SIF   S+   L+ G ++H  AVK     N +   A+I  Y K   +  A++VF R   
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + ++ W + ++A   +    +A + F+ ML+     D V++T ++SA AH+   ++A   
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGA 538

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSR--ARRISEATEFVS-KMPVKPSAKVWGALLYGAS 354
           F  M  ++ + P+      ++GV     A +I +    V+ K+ +     V  AL     
Sbjct: 539 FKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL----- 592

Query: 355 ISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           IS   + G      +F++  E    T N II    Y+Q G   EA ++ + M+ +G+
Sbjct: 593 ISMYFKCGCADSRRIFDLMEERDIFTWNTIITG--YAQHGLGREAIKMYQHMESAGV 647



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 173/365 (47%), Gaps = 28/365 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDI++WNSMI+ Y   G  +  + L+ + ++   +R   +    +L   G+   ++ 
Sbjct: 60  MPRRDIIAWNSMISAYCHNGMPDAARDLY-DAISGGNMRTGAI----LLSGYGRLGRVLE 114

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              V + ++E +     W  NA+I  Y + G +  AR L D M  +D  S++++++GY  
Sbjct: 115 ARRVFDGMLERNTVA--W--NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCH 170

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +  A +LF+ M    L +W  +ISG  +   H    D+  +M   G+ P+    +S 
Sbjct: 171 SLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASA 230

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGFLHGAQRVFDRFKGRS 239
            S      NL   + +   A+K  ++R++ + TAI++ Y++ T  L  A + F+    R+
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN 290

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVDKAW 295
              W+ +I+A +  G    A++++        + DPV      TA+++  A  G +D A 
Sbjct: 291 EYTWSTMIAALSHGGRIDAAIAVY--------ERDPVKSIACRTALITGLAQCGRIDDAR 342

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +F  +      +P V  +  ++    +   ++EA E   KMP + +   W  ++ G + 
Sbjct: 343 ILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-WAGMIAGYAQ 396

Query: 356 SGDVE 360
           +G  E
Sbjct: 397 NGRSE 401



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 155/340 (45%), Gaps = 16/340 (4%)

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V  +H ++++  C+A I    + G +  AR + D M  +D ++++++IS Y  +G  + A
Sbjct: 25  VRHAHGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA 84

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            DL+  +    + T   ++SG  +  R   VL+  R +    +  N V  +++ S +   
Sbjct: 85  RDLYDAISGGNMRTGAILLSGYGRLGR---VLE-ARRVFDGMLERNTVAWNAMISCYVQN 140

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            ++   + +          R++    +++  Y  +  +  A+ +F++   R+L+ WT +I
Sbjct: 141 GDITMARRL----FDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMI 196

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           S Y    +  KA  +F +M   G+ PD   F + LSA    G +D   +    ++ + G 
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD-VLESLRVLALKTGF 255

Query: 308 QPSVEHYACMVGVLSRARRISE-ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           +  V     ++ V SR   + + A +F   M ++ +   W  ++   S  G ++    V 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESM-IERNEYTWSTMIAALSHGGRIDAAIAV- 313

Query: 367 DHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
              +E +P ++      +    +Q GR D+A  + EQ+ E
Sbjct: 314 ---YERDPVKSIACRTALITGLAQCGRIDDARILFEQIPE 350


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 275/472 (58%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+MI+GY+Q GF  E   +F +ML     +PD  T+ S L AC    ++  
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G ++H  +I +       + NALI MY+K G ++ A+ ++++  +S+ D ++++A++ GY
Sbjct: 297 GKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGY 356

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G +  A  +F  ++   +  W A+I G VQN  ++  ++L R M   G +PN  T++
Sbjct: 357 VKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLA 416

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-G 237
           ++ S+ S  ++L  G++IH  A ++    ++ V+ A+I  YAK+G ++ A+ VF+     
Sbjct: 417 TMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWK 476

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R  I WT++I A A HG   +A++LF  ML NGI+PD +T+  VLSAC H GLV++    
Sbjct: 477 RDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSY 536

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +N M   + I P+  HYACM+ +  RA  + EA  F+  MP++P    WG+LL    +  
Sbjct: 537 YNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHK 596

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +VEL +   + L  IEPEN+G Y  +AN+YS  G+W+ A  +R+ MK+ G+ K  G SW+
Sbjct: 597 NVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWV 656

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           +    +  F   D    + + IY ++ ++   +++ G+V     +L ++EEE
Sbjct: 657 QIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEE 708



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 199/412 (48%), Gaps = 38/412 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D VSW +MI GY+Q G +E    +FREM++  V  P   T+ +VL +C     +  
Sbjct: 105 MPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDV-PPTQFTLTNVLASCAAVECLGI 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FV++  +   + + N+L+ MYAK G    A+ + D M  K   S++ +IS +M 
Sbjct: 164 GRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQ 223

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
            G V+ A   F+ M    + +WNA+ISG  Q+      LD+  +M   S  +P+  T++S
Sbjct: 224 SGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLAS 283

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDR-------------------------------- 207
             S  ++  NLK GK+IH + ++  +D                                 
Sbjct: 284 ALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISN 343

Query: 208 -NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            ++   TA++D Y K G ++ A+R+FD  + R ++ WTA+I  Y  +G    A+ LF  M
Sbjct: 344 LDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSM 403

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           +  G +P+  T   +LS  +    +D    I +A + + G   SV     ++ + +++  
Sbjct: 404 IKEGPKPNNYTLATMLSVSSSLASLDHGRQI-HASATRSGNASSVSVSNALITMYAKSGS 462

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPEN 376
           I++A    + +  K     W +++   +  G  E    + + + E  I+P++
Sbjct: 463 INDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 148/314 (47%), Gaps = 43/314 (13%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           E  +S +L        S LQ   +  D   G  +H  +I++ + + +++ N L+  YAK 
Sbjct: 2   ETSSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKT 61

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G +  A  + DEM  K   S++ I+SGY   G +E+A  +F+ M  P   +W A+I G  
Sbjct: 62  GFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYN 121

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
           Q  + E  + + REM +  V P   T++++ +  +    L  G+++H + VK+     I 
Sbjct: 122 QMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYIS 181

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFK-------------------------------GRS 239
           VA ++++ YAK+G    A+ VFDR K                                R 
Sbjct: 182 VANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERD 241

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACA-----------H 287
           ++ W A+IS Y  HG   +A+ +F++ML ++  +PD  T  + LSACA           H
Sbjct: 242 VVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIH 301

Query: 288 SGLVDKAWDIFNAM 301
           + ++   +D F A+
Sbjct: 302 AHIIRTEFDTFGAV 315


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 256/469 (54%), Gaps = 7/469 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ +SW  MIAGY+Q G  EE   L +E+  S +L P   ++ S+  AC     +  
Sbjct: 379 MPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML-PSLSSLTSIFFACSNIVALET 437

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  ++   + + + CNALI MY KC +++YAR +   M  KD VS+++ ++  + 
Sbjct: 438 GTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +  +++A + F  M      +W  +IS      +    +   + M      PN+  ++ +
Sbjct: 498 NDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTIL 557

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +       K G++IH  A+K   D  + VA A+I  Y K G    ++R+FD  + R +
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDI 616

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  II+ YA HG   +A+ ++  M + G+ P+ VTF  +L+AC+H+GLVD+ W  F +
Sbjct: 617 FTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKS 676

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG+ P  EHYACMV +L R   +  A +F+  MP++P   +W ALL    I  + E
Sbjct: 677 MSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAE 736

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK   + LF IEP N GNY++++N+YS  G W E   VR+ MK+ G+ K PG SW +  
Sbjct: 737 IGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIK 796

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + SFV  D   ++ E+I   LE L  L++  GYV     +L +++EE
Sbjct: 797 DKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEE 845



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 170/334 (50%), Gaps = 18/334 (5%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
            ALI   A+CG +D AR L +++ +   VS++A+I+GYM +G V +A +LF  M      
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W  +I+G  QN R E  L L++E+  SG+ P+  +++SIF   S+   L+ G ++H  A
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK     N +   A+I  Y K   +  A++VF R   + ++ W + ++A   +    +A 
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEAR 505

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           + F+ ML+     D V++T ++SA AH+   ++A   F  M  ++ + P+      ++GV
Sbjct: 506 NTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGV 560

Query: 321 LSR--ARRISEATEFVS-KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN- 376
                A +I +    V+ K+ +     V  AL     IS   + G      +F++  E  
Sbjct: 561 CGSLGASKIGQQIHTVAIKLGMDSELIVANAL-----ISMYFKCGCADSRRIFDLMEERD 615

Query: 377 --TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             T N II    Y+Q G   EA ++ + M+ +G+
Sbjct: 616 IFTWNTIITG--YAQHGLGREAIKMYQHMESAGV 647



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 173/365 (47%), Gaps = 28/365 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDI++WNSMI+ Y   G  +  + L+ + ++   +R   +    +L   G+   ++ 
Sbjct: 60  MPRRDIIAWNSMISAYCHNGMPDAARDLY-DAISGGNMRTGAI----LLSGYGRLGRVLE 114

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              V + ++E +     W  NA+I  Y + G +  AR L D M  +D  S++++++GY  
Sbjct: 115 ARRVFDGMLERNTVA--W--NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCH 170

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +  A +LF+ M    L +W  +ISG  +   H    D+  +M   G+ P+    +S 
Sbjct: 171 SLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASA 230

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGFLHGAQRVFDRFKGRS 239
            S      NL   + +   A+K  ++R++ + TAI++ Y++ T  L  A + F+    R+
Sbjct: 231 LSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN 290

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVDKAW 295
              W+ +I+A +  G    A++++        + DPV      TA+++  A  G +D A 
Sbjct: 291 EYTWSTMIAALSHGGRIDAAIAVY--------ERDPVKSIACRTALITGLAQCGRIDDAR 342

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +F  +      +P V  +  ++    +   ++EA E   KMP + +   W  ++ G + 
Sbjct: 343 ILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-WAGMIAGYAQ 396

Query: 356 SGDVE 360
           +G  E
Sbjct: 397 NGRSE 401



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 155/340 (45%), Gaps = 16/340 (4%)

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V  +H ++++  C+A I    + G +  AR + D M  +D ++++++IS Y  +G  + A
Sbjct: 25  VRHAHGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA 84

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            DL+  +    + T   ++SG  +  R   VL+  R +    +  N V  +++ S +   
Sbjct: 85  RDLYDAISGGNMRTGAILLSGYGRLGR---VLE-ARRVFDGMLERNTVAWNAMISCYVQN 140

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            ++   + +          R++    +++  Y  +  +  A+ +F++   R+L+ WT +I
Sbjct: 141 GDITMARRL----FDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMI 196

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           S Y    +  KA  +F +M   G+ PD   F + LSA    G +D   +    ++ + G 
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD-VLESLRVLALKTGF 255

Query: 308 QPSVEHYACMVGVLSRARRISE-ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           +  V     ++ V SR   + + A +F   M ++ +   W  ++   S  G ++    V 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESM-IERNEYTWSTMIAALSHGGRIDAAIAV- 313

Query: 367 DHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
              +E +P ++      +    +Q GR D+A  + EQ+ E
Sbjct: 314 ---YERDPVKSIACRTALITGLAQCGRIDDARILFEQIPE 350


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 267/472 (56%), Gaps = 15/472 (3%)

Query: 5   DIVSWNSMIAGYSQGG-FYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++++WN +++G ++ G   +   AL R  ++S    PD   V   L A G   ++  G +
Sbjct: 117 NVITWNGLVSGLNRSGRALDAVTALVR--MHSEGFFPDATGVSCALSAVGDVKEVSVGKQ 174

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V+++  ++D  +  ALI MY KCG  D    +  E S  D  S +A+++G   +  
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 124 VEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           V +A+ LF+     G+     +W ++++  VQN R    +DL R MQ+ GV PN+VTI  
Sbjct: 235 VSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPC 294

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +   F++ + L  G+  H ++++  +  ++YV +A++D YAK G    A+ +FD    R+
Sbjct: 295 VLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRN 354

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I  YA HGDA+ AV LF  M     +PD VTFT VL AC+ +GL ++    FN
Sbjct: 355 VVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFN 414

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   +GI P +EHYACMV +L R+ ++ EA + +++MP +P + +WG+LL    + G+V
Sbjct: 415 EMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNV 474

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            L +   + LF++EP N GNY++++N+Y+    WD  +RVR++MK  GL K  G SWIE 
Sbjct: 475 LLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEI 534

Query: 420 SGGLQSFVAKDTS-------GDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +   +A D S        +K  Q+ + + R LG      +VL D  E+E
Sbjct: 535 KNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNR-LGFAPSRDFVLHDVEEQE 585



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 204/480 (42%), Gaps = 64/480 (13%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD   + S L++C           +H   + S +  D ++ ++L+  Y + G+   AR++
Sbjct: 18  PDPHLLPSALKSCPAQP---LARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRH 155
            D M +K+ V +SA+I+GY   G  E A  L + M+     P + TWN ++SGL ++ R 
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 156 -EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
            +AV  LVR M + G  P+A  +S   S       +  GK++HGY VK     +  V TA
Sbjct: 135 LDAVTALVR-MHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTA 193

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +ID Y K G      RVF       +    A+++  + +   S+A+ LF E +  G++ +
Sbjct: 194 LIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELN 253

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC------------------ 316
            V++T++++ C  +G   +A D+F  M    G++P+     C                  
Sbjct: 254 VVSWTSIVACCVQNGRDLEAVDLFRTMQ-SIGVEPNSVTIPCVLPAFANVAALMHGRSAH 312

Query: 317 -----------------MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
                            +V + ++  +   A      MP + +   W A++ G ++ GD 
Sbjct: 313 CFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR-NVVSWNAMIGGYAMHGDA 371

Query: 360 ELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
               +  C      +  +   +  +    SQAG  +E  R   +M++ G    P      
Sbjct: 372 ANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQ-GHGISPRMEHYA 430

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILE-----------RLLGLMREEGYVLLDEVEEESAY 467
           C   + + + +  SG   E   LI E            LLG  R  G VLL EV  E  +
Sbjct: 431 C---MVTLLGR--SGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLF 485



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN+MI GY+  G       LF  M      +PD VT   VL AC Q+     
Sbjct: 350 MPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCK-QKPDLVTFTCVLGACSQAGLTEE 408

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G    N + + H    +M+ + C  ++ +  + G LD A  L++EM  + D   + +++ 
Sbjct: 409 GRRYFNEMQQGHGISPRMEHYAC--MVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLG 466

Query: 117 GYMVHGFV----EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR-EMQASGVR 171
              V+G V      A  LFQ+   PG +    ++S +  + +    ++ VR EM+  G++
Sbjct: 467 SCRVYGNVLLAEVAAEKLFQL--EPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLK 524


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/537 (32%), Positives = 282/537 (52%), Gaps = 101/537 (18%)

Query: 31  EMLN-SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           E++N SP    +  T  SVLQ C     I  G  +H+ +  + +++D  + + L+ MY  
Sbjct: 89  ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148

Query: 90  CGSL-------------------------------------------------DYARALL 100
           CG L                                                 + AR L 
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST------------------- 141
           DE+ D+D +S++++ISGY+ +G  EK +DLF+ M   G++T                   
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDM 268

Query: 142 ------------------------WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                   W ++I+G  +    +  + L  EM+   + PN++T+
Sbjct: 269 YSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITM 328

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           + I    +  + L+ G+EIHG+ ++N +  + +VA A++D Y K G L  A+ +FD    
Sbjct: 329 ACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPE 388

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + L+ WT +I+ Y  HG  S+A++ FNEM N+GI+PD V+F ++L AC+HSGL+D+ W  
Sbjct: 389 KDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGF 448

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN M     I+P  EHYAC+V +L+RA  +S+A +F+  MP++P A +WGALL G  I  
Sbjct: 449 FNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYH 508

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           DV+L + V +H+FE+EPENTG Y+++AN+Y++A +W+E  ++RE++   GL K PG SWI
Sbjct: 509 DVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 568

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG------YVLL--DEVEEESA 466
           E  G +  FV  D+S   + +I L+L++    M+EEG      Y L+  D+ E+E A
Sbjct: 569 EIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMA 625


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 257/455 (56%), Gaps = 33/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSW +MI  Y++ G Y++   LF+EM      RPD   + S L A   +  +  
Sbjct: 358 MVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM-GLEGTRPDIFAITSALHAFAGNELLKH 416

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH + I + ++  L + NAL+ MY KCG+++ A+ + D +  KD +S          
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMIS---------- 466

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I G  +NN       L  EM    +RPNAVT++ I
Sbjct: 467 ---------------------WNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCI 504

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+L+ G+E+H YA++  Y  + +VA A+ID Y K G L  A+R+FDR   ++L
Sbjct: 505 LPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNL 564

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT +++ Y  HG    A++LF +M  +GI PD  +F+A+L AC+HSGL D+ W  F+A
Sbjct: 565 ISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDA 624

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I+P ++HY CMV +L     + EA EF+  MP++P + +W +LL G  I  +V+
Sbjct: 625 MRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVK 684

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + +FE+EPENTG Y+++AN+Y++A RW+   +++ ++   GL +  G SWIE  
Sbjct: 685 LAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAK 744

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G +  F+A + +  +  +I   L  +   M+EEG+
Sbjct: 745 GKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGH 779



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 182/410 (44%), Gaps = 71/410 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD++SWNSMI+G +  G Y++   LF  M L    L  D  T++SVL AC +   + 
Sbjct: 257 MPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEEL--DSATLLSVLPACAELHLLF 314

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  VH + +++       + N L+ MY+ C        +   M  K+ VS++A+I+ Y 
Sbjct: 315 LGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYT 374

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G  +K   LFQ                               EM   G RP+   I+S
Sbjct: 375 RAGLYDKVAGLFQ-------------------------------EMGLEGTRPDIFAITS 403

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
               F+    LK GK +HGYA++N  ++ + V  A+++ Y K G +  A+ +FD    + 
Sbjct: 404 ALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKD 463

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I W  +I  Y+ +  A++A SLF EML   ++P+ VT T +L A A    +++  ++  
Sbjct: 464 MISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREM-- 520

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
                         YA   G L          +FV+   +    K  GALL         
Sbjct: 521 ------------HAYALRRGYLE--------DDFVANALIDMYVKC-GALL--------- 550

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
            L + + D L     +N  ++ IM   Y   GR  +A  + EQM+ SG+A
Sbjct: 551 -LARRLFDRL---SNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIA 596



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 119/262 (45%), Gaps = 38/262 (14%)

Query: 37  VLRPDGV---TVVSVLQACGQSSDIVFGMEVHNFVIESHIK---MDLWICNALIGMYAKC 90
           +L  DGV   +  +VLQ C +   +  G   H  V  S +    MD  +   L+ MY KC
Sbjct: 83  LLGSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKC 142

Query: 91  GSLDYARALLDEMSDKDEVS-YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           G L+ AR + DEM    +V  ++A++SGY       KA DL                   
Sbjct: 143 GDLENARRVFDEMPQVSDVRVWTALMSGY------AKAGDL------------------- 177

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
                 E VL L R+M   GVRP+A TIS +    +   +++ G+ +HG   K  +    
Sbjct: 178 -----REGVL-LFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQC 231

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            V  A++  YAK+     A  VFD    R +I W ++IS   ++G   KA+ LF  M   
Sbjct: 232 AVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLE 291

Query: 270 GIQPDPVTFTAVLSACAHSGLV 291
           G + D  T  +VL ACA   L+
Sbjct: 292 GEELDSATLLSVLPACAELHLL 313



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRF 235
           ++  L S   +L+GGK  H     +   R+     +   ++  Y K G L  A+RVFD  
Sbjct: 96  AVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEM 155

Query: 236 KGRSLI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              S + +WTA++S YA  GD  + V LF +M   G++PD  T + VL   A  G ++  
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG 215

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            ++ + +  + G          ++   +++ R  +A      MP +     W +++ G +
Sbjct: 216 -EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVIS-WNSMISGCT 273

Query: 355 ISG 357
            +G
Sbjct: 274 SNG 276


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/469 (37%), Positives = 261/469 (55%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD  SWN+MI+GY Q G   E   +  EM    V + D +TV SVL  C Q  DI+ 
Sbjct: 55  MPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGV-KMDAITVASVLPVCAQVGDILS 113

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +VI+  ++ +L++ NALI MYAK GSL +A+ +   +  KD VS++ +I+GY  
Sbjct: 114 GKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQ 172

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++++ +M+                   HE ++            PN  T  SI
Sbjct: 173 NGLASEAIEVYLLMEE------------------HEEII------------PNQGTWVSI 202

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              +SH   L+ G  IHG  +KN    +++V T +ID Y K G L  A  +F +   ++ 
Sbjct: 203 LPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNS 262

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS Y  HGD  KA+ LF EM    ++PD +TF ++LSAC+HSGLV  A   FN 
Sbjct: 263 VPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNM 322

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YGI+PS++HY CMV +  RA  +  A  F+ KMP++P A  WGALL    I G++E
Sbjct: 323 MEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIE 382

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   + LFE++ EN G Y++++N+Y+  G+W+  D VR   ++ GL K PG S I  +
Sbjct: 383 LGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILN 442

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  F   + +  K E+IY  L  L   ++  GYV     +L +VEE+
Sbjct: 443 NKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEED 491



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 158/314 (50%), Gaps = 38/314 (12%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           V++ACG   D++ G ++H  V++   + D+++  +L+ MY++ G +  AR L D+M  +D
Sbjct: 3   VVKACG---DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++A+ISGY                                QN      LD+  EM+ 
Sbjct: 60  RGSWNAMISGY-------------------------------CQNGNAAEALDIADEMRL 88

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV+ +A+T++S+  + +   ++  GK IH Y +K+  +  ++V+ A+I+ YAK G L  
Sbjct: 89  EGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGH 148

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACA 286
           AQ+VF     + ++ W  +I+ YA +G AS+A+ ++  M  +  I P+  T+ ++L A +
Sbjct: 149 AQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYS 207

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
           H G + +   I   +  +  +   V    C++ +  +  ++ +A     ++P K S   W
Sbjct: 208 HVGALQQGMRIHGQVI-KNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVP-W 265

Query: 347 GALLYGASISGDVE 360
            A++    + GD E
Sbjct: 266 NAMISCYGVHGDGE 279



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L  GK+IH   +K  ++ +++VA +++  Y++ G +  A+++FD    R    W A+IS
Sbjct: 9   DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMIS 68

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            Y  +G+A++A+ + +EM   G++ D +T  +VL  CA  G +     + +    ++G++
Sbjct: 69  GYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSG-KLIHLYVIKHGLE 127

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG----DVELGKF 364
             +     ++ + ++   +  A + V  + +K     W  L+ G + +G     +E+   
Sbjct: 128 FELFVSNALINMYAKFGSLGHAQK-VFGLLIKDVVS-WNTLITGYAQNGLASEAIEVYLL 185

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + +H  EI P N G ++ +   YS  G   +  R+  Q+ ++ L
Sbjct: 186 MEEHE-EIIP-NQGTWVSILPAYSHVGALQQGMRIHGQVIKNCL 227


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/506 (32%), Positives = 287/506 (56%), Gaps = 44/506 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ +++V +N MI  Y     Y++   +++ M     + PD  T   VL+A  +S  +  
Sbjct: 80  ITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFV-PDMYTYPCVLKASSRSDSLWV 138

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  V++  + ++L++ N LI MY KC SL  A+ +LDE+  +D VS+++++S Y  
Sbjct: 139 GLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQ 198

Query: 121 HGFVEKAMDL-------------------------------------FQVMKRPGLSTWN 143
           +G    A++L                                     F  + +  + +WN
Sbjct: 199 NGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWN 258

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            +I+  V N+  +  + L  +M+A+GV P+ V+I S+   +   S L  G+ +H +A + 
Sbjct: 259 VMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERK 318

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           +   N+ +  A+ID YAK G L  A+ VF++ + R ++ WT+IISAY   G    AV++F
Sbjct: 319 KLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVF 378

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            EM N+G+ PD + F +VL+AC+H+GL+D     FN M+ + GI P +EH+AC+V +L R
Sbjct: 379 AEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGR 437

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A +I EA  F+ +MP++P  +VWG LL    +  ++ +G    D L  + PE++G Y+++
Sbjct: 438 AGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLL 497

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y++AGRW +   +R  M+  G+ K+PG S +E + G+ +F+A D S  +S++IY  L
Sbjct: 498 SNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEEL 557

Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
           + L+G M+E GY+      L +VEEE
Sbjct: 558 DVLVGKMKELGYMPETDSALHDVEEE 583



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 152/365 (41%), Gaps = 57/365 (15%)

Query: 54  QSSDIVFGMEVHNFVI-ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
           Q  DI    ++H  V+ + +++ +  +   L+ +YA CG    AR + DE++DK+ V ++
Sbjct: 30  QYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFN 89

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            +I  Y                               V N+ ++  L + + M   G  P
Sbjct: 90  VMIRSY-------------------------------VNNHLYKDALLVYKTMYTQGFVP 118

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           +  T   +    S   +L  G +IHG  +K   D N+YV   +I  Y K   L  AQ+V 
Sbjct: 119 DMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--- 289
           D    R ++ W +++S YA +G  + A+ L  EM    ++P+  T  ++L A  ++    
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDN 238

Query: 290 ----------LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
                     L  K+   +N M   Y +  S+   A  V + S+        + VS + V
Sbjct: 239 VLYVKEMFLKLTKKSVISWNVMIAMY-VNNSMPKEA--VVLYSQMEANGVEPDVVSIVSV 295

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
            P+     AL  G  +    E  K + + L E       N +I  ++Y++ G   +A  V
Sbjct: 296 LPAYGDLSALSLGRRVHKFAERKKLLPNLLLE-------NALI--DMYAKCGCLRDARAV 346

Query: 400 REQMK 404
             QM+
Sbjct: 347 FNQMQ 351


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 265/460 (57%), Gaps = 8/460 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN MI+GY +   +E+   +F  M     L PD  TVVS L AC     +  
Sbjct: 198 MPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLEL 257

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H++V   ++K    I NAL+ MY KCG L  ARA+ +EM  K+ + ++ ++SGY  
Sbjct: 258 GKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYAN 316

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E+A +LF+      +  W A+I+G VQ NR +  + L REMQ   V+P+   + S+
Sbjct: 317 CGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSL 376

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    ++ GK IH +  +NR   +  V TA+I+ YAK GF+  A  +F   + +  
Sbjct: 377 LTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDT 436

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT+II   A +G  SKA+ LF++M   G++PD +TF  VLSAC+H GLV++    FN+
Sbjct: 437 ASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNS 496

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA---KVWGALLYGASISG 357
           M  +Y I+P VEHY C+V +L RA  ++EA E + K+P +  A    ++G+LL    I G
Sbjct: 497 MRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYG 556

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +VE+G+ V   L + E  ++  + ++AN+Y+ A RW++  +VR +MK+ G+ K PG S I
Sbjct: 557 NVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSI 616

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLIL----ERLLGLMREE 453
           E    +  F +   S  +  +IY +L    + LLG  + E
Sbjct: 617 EVDSIIHEFFSGHPSHPEMREIYYMLNIMAKPLLGSAKNE 656



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 17/290 (5%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +  A  +F+ ++ P L  +N +I    +   ++  L L  +++  G+ P+  T   +
Sbjct: 84  NGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFV 143

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F    +   +   +++ G   K   + + YV  ++ID YA+       + +FD    R +
Sbjct: 144 FKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDV 203

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W  +IS Y        A+++F  M   +G+ PD  T  + LSAC     ++    I +
Sbjct: 204 ISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHH 263

Query: 300 AMSGQYGIQPSVEH----YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +       P + +      C  G LS AR + E      +MP K +   W  ++ G + 
Sbjct: 264 YVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFE------EMPSK-NVICWTTMVSGYAN 316

Query: 356 SGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            G++E  +     LFE  P  +   +  M N Y Q  R+DEA  +  +M+
Sbjct: 317 CGELEEAR----ELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQ 362


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 263/454 (57%), Gaps = 5/454 (1%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS---SDIVFGME 63
           VSW S I+ + +   + +  + F +ML + V  P+ +T++++L AC  S   + I FG  
Sbjct: 53  VSWTSSISHHCKNNNFLKAASEFIQMLEAEV-EPNHITLITLLSACAHSPSKTSITFGAA 111

Query: 64  VHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H    +    M D+ +  ALI MYAKCG LDYAR + D+M  ++ VS++ +I GYM +G
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V+ A+ LF  +    + +W  VI G V+   +E  L+  REMQ +GV P+ VT+ +I S
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++   L  G  +H   +K  +  N+ V  ++ID YA+ G +  A++VFD    R+L+ 
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +II  +A +G A KA+S F  M   G++P+ V++T+ L+AC+H+GL+D+   IF  + 
Sbjct: 292 WNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIK 351

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             +   P +EHY C+V + SRA R+ EA + + KMP+ P+  V G+LL      GDVEL 
Sbjct: 352 RDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELA 411

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + V  +  E+ P    NY++ +N+Y+  G+WD A +VR +MKE GL K    S IE   G
Sbjct: 412 EKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSG 471

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  FV+ D   ++++ IY  LE L   +   GYV
Sbjct: 472 IHKFVSGDKYHEENDYIYSALELLSFELHLYGYV 505



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 134/294 (45%), Gaps = 69/294 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQ--------------------------GGF-----YEECKALF 29
           M  R++VSWN+MI GY +                          GGF     YEE    F
Sbjct: 152 MGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECF 211

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           REM  + V+ PD VTV++++ AC     +  G+ VH  V++   + ++ + N+LI MYA+
Sbjct: 212 REMQLAGVV-PDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYAR 270

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG ++ AR + D MS ++ VS+++II G+ V+G  +KA+  F+ MK+ GL          
Sbjct: 271 CGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGL---------- 320

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN- 208
                                 PN V+ +S  +  SH   +  G +I  +A   R  RN 
Sbjct: 321 ---------------------EPNGVSYTSALTACSHAGLIDEGLKI--FADIKRDHRNS 357

Query: 209 --IYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHGDASKA 259
             I     ++D Y++ G L  A  V  +     + ++  ++++A    GD   A
Sbjct: 358 PRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELA 411



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 22/223 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSWNS+I G++  G  ++  + FR M     L P+GV+  S L AC  +  I  
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFFRSM-KKEGLEPNGVSYTSALTACSHAGLIDE 342

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+++   +   H    +++ + C  L+ +Y++ G L  A  ++ +M    +EV   ++++
Sbjct: 343 GLKIFADIKRDHRNSPRIEHYGC--LVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLA 400

Query: 117 GYMVHGFVEKAMDL--FQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPN 173
                G VE A  +  +QV   PG  +   + S +     + +    + REM+  G++ N
Sbjct: 401 ACRTQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKN 460

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAI 215
                        FS+++    IH +   ++Y + N Y+ +A+
Sbjct: 461 LA-----------FSSIEIDSGIHKFVSGDKYHEENDYIYSAL 492


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 267/469 (56%), Gaps = 14/469 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN+MI+GY+Q G   E + LF E   SPV   D  T  +++    Q+  +  
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPV--RDVFTWTAMVSGYVQNGMLDE 284

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              V + + E +     W  NA+I  Y +C  +D AR L + M  ++  S++ +I+GY  
Sbjct: 285 ARRVFDGMPEKNSVS--W--NAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQ 340

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G + +A + F  M +    +W A+I+G  Q+   E  L L  EM+  G R N  T +S 
Sbjct: 341 NGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 400

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L+ GK++HG  VK   +   YV  A++  Y K G +  A  VF+  + + +
Sbjct: 401 LSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEV 460

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ YA HG   +A+ LF  M   GI PD VT   VLSAC+H+GLVDK  + F +
Sbjct: 461 VSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYS 520

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI  + +HY CM+ +L RA R+ +A   +  MP +P A  WGALL  + I G+ E
Sbjct: 521 MTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTE 580

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     +FE+EP+N+G Y++++NLY+ +GRW +  R+R +M++ G+ K+PG SW+E  
Sbjct: 581 LGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQ 640

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F   D+   + ++IY  LE L   M++EGYV     +L +VEEE
Sbjct: 641 NKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE 689



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 201/446 (45%), Gaps = 68/446 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+M++GY+Q G+ +E K +F EM   P    + ++   +L A  Q+  I  
Sbjct: 137 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM---PC--KNSISWNGMLAAYVQNGRI-- 189

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E    + ES    +L   N ++G Y K   L  AR + D M ++DEVS++ +ISGY  
Sbjct: 190 --EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQ 247

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G + +A  LF+      + TW A++SG VQN     +LD  R +       N+V+ ++I
Sbjct: 248 NGELLEAQRLFEESPVRDVFTWTAMVSGYVQN----GMLDEARRVFDGMPEKNSVSWNAI 303

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +     +   +E+     +    +N+     +I  YA+ G +  A+  FDR   R  
Sbjct: 304 IAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS 359

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           I W AII+ YA  G   +A+ LF EM  +G + +  TFT+ LS CA              
Sbjct: 360 ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 419

Query: 288 ----------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                                  G +D A+ +F  +      +  V  +  M+   +R  
Sbjct: 420 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE-----EKEVVSWNTMIAGYARHG 474

Query: 326 RISEAT---EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-----NT 377
              EA    E + K  + P       +L   S +G V+ G    ++ + +  +     N+
Sbjct: 475 FGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT---EYFYSMTQDYGITANS 531

Query: 378 GNYIIMANLYSQAGRWDEADRVREQM 403
            +Y  M +L  +AGR D+A  + + M
Sbjct: 532 KHYTCMIDLLGRAGRLDDAQNLMKNM 557



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 168/354 (47%), Gaps = 29/354 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DIV WN  I  + + G   +C +  R   + P  R   ++  +++  C  +       ++
Sbjct: 48  DIVKWNIAITNHMRNG---QCDSALRLFNSMP--RRSSISWNAMISGCLSNDKFYLARQL 102

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
                E     DL   N +I    +  +L  AR L D+M ++D VS++A++SGY  +G+V
Sbjct: 103 ----FEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A ++F  M      +WN +++  VQN R    ++  R +  S      ++ + +   +
Sbjct: 159 KEAKEIFDEMPCKNSISWNGMLAAYVQNGR----IEDARRLFESKADWELISWNCMMGGY 214

Query: 185 SHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +K  + +    + +R  +R+      +I  YA+ G L  AQR+F+    R +  W
Sbjct: 215 -----VKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTW 269

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA++S Y  +G   +A  +F+ M     + + V++ A+++       +D+A ++F AM  
Sbjct: 270 TAMVSGYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 325

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           Q     +V  +  M+   ++   I++A  F  +MP + S   W A++ G + SG
Sbjct: 326 Q-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-WAAIIAGYAQSG 373



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 69/359 (19%)

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR--------- 154
           +D D V ++  I+ +M +G  + A+ LF  M R    +WNA+ISG + N++         
Sbjct: 45  TDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFE 104

Query: 155 HEAVLDLV------------REMQASGV------RPNAVTISSIFSLFSHFSNLKGGKEI 196
                DLV            R ++A+ +        + V+ +++ S ++    +K  KEI
Sbjct: 105 KMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEI 164

Query: 197 H----------------GYAVKNRYD--RNIYVATA---------IIDTYAKTGFLHGAQ 229
                             Y    R +  R ++ + A         ++  Y K   L  A+
Sbjct: 165 FDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDAR 224

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            +FDR   R  + W  +IS YA +G+  +A  LF E        D  T+TA++S    +G
Sbjct: 225 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE----SPVRDVFTWTAMVSGYVQNG 280

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           ++D+A  +F+ M      + SV   A + G + + +R+ +A E    MP + +   W  +
Sbjct: 281 MLDEARRVFDGMPE----KNSVSWNAIIAGYV-QCKRMDQARELFEAMPCQ-NVSSWNTM 334

Query: 350 LYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           + G + +GD+   +    + F+  P+ ++ ++  +   Y+Q+G  +EA  +  +MK  G
Sbjct: 335 ITGYAQNGDIAQAR----NFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 264/474 (55%), Gaps = 34/474 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R I  WN+MIAGYSQ    +E   LF  M  S  L  +  T+  V+ AC +S     
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H FV++  +  D ++ N L+ MY++ G +D A  +  +M D+D V+++ +I+GY+ 
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 396

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR----PNAVT 176
               E A+ L   M+                        +L R++     R    PN++T
Sbjct: 397 SEHHEDALLLLHKMQ------------------------NLERKVSKGASRVSLKPNSIT 432

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + +I    +  S L  GKEIH YA+KN    ++ V +A++D YAK G L  +++VFD+  
Sbjct: 433 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 492

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +++I W  II AY  HG+  +A+ L   M+  G++P+ VTF +V +AC+HSG+VD+   
Sbjct: 493 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 552

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASI 355
           IF  M   YG++PS +HYAC+V +L RA RI EA + ++ MP     A  W +LL  + I
Sbjct: 553 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 612

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             ++E+G+    +L ++EP    +Y+++AN+YS AG WD+A  VR  MKE G+ K PG S
Sbjct: 613 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 672

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           WIE    +  FVA D+S  +SE++   LE L   MR+EGYV     +L  VEE+
Sbjct: 673 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 726



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 38/294 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSD 57
           +S+R+ VSWNS+I+       +E     FR ML+  V  P   T+VSV+ AC        
Sbjct: 72  ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLPMPEG 130

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           ++ G +VH + +    +++ +I N L+ MY K G L  ++ LL     +D          
Sbjct: 131 LMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD---------- 179

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                L TWN V+S L QN +    L+ +REM   GV P+  TI
Sbjct: 180 ---------------------LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 218

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           SS+    SH   L+ GKE+H YA+KN   D N +V +A++D Y     +   +RVFD   
Sbjct: 219 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 278

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSG 289
            R + +W A+I+ Y+ +    +A+ LF  M  + G+  +  T   V+ AC  SG
Sbjct: 279 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 332



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 189/449 (42%), Gaps = 82/449 (18%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+WN++++   Q     E     REM+   V  PD  T+ SVL AC     +  G E
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV-EPDEFTISSVLPACSHLEMLRTGKE 236

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H + +++  +  + ++ +AL+ MY  C  +   R + D M D+                
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK--------------- 281

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIF 181
                           +  WNA+I+G  QN    EA+L  +   +++G+  N+ T++ + 
Sbjct: 282 ----------------IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 325

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                       + IHG+ VK   DR+ +V   ++D Y++ G +  A R+F + + R L+
Sbjct: 326 PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV 385

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLN-----------NGIQPDPVTFTAVLSACAHSGL 290
            W  +I+ Y        A+ L ++M N             ++P+ +T   +L +CA    
Sbjct: 386 TWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSA 445

Query: 291 VDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI------------------ 327
           + K     A+ I N ++    +  ++       G L  +R++                  
Sbjct: 446 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 505

Query: 328 -------SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGK---FVCDHLFEIEP 374
                   EA + +  M    VKP+   + ++    S SG V+ G    +V    + +EP
Sbjct: 506 YGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEP 565

Query: 375 ENTGNYIIMANLYSQAGRWDEADRVREQM 403
            ++ +Y  + +L  +AGR  EA ++   M
Sbjct: 566 -SSDHYACVVDLLGRAGRIKEAYQLMNMM 593



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 36/254 (14%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYA 96
           ++PD     ++L+A     D+  G ++H  V +    +D + + N L+ +Y KCG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             + D +S++++VS                               WN++IS L    + E
Sbjct: 66  YKVFDRISERNQVS-------------------------------WNSLISSLCSFEKWE 94

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG---GKEIHGYAVKNRYDRNIYVAT 213
             L+  R M    V P++ T+ S+ +  S+    +G   GK++H Y ++ + + N ++  
Sbjct: 95  MALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIIN 153

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
            ++  Y K G L  ++ +   F GR L+ W  ++S+   +    +A+    EM+  G++P
Sbjct: 154 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 213

Query: 274 DPVTFTAVLSACAH 287
           D  T ++VL AC+H
Sbjct: 214 DEFTISSVLPACSH 227



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHG 227
           G++P+     ++    +   +++ GK+IH +  K  Y  + + VA  +++ Y K G    
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             +VFDR   R+ + W ++IS+  +      A+  F  ML+  ++P   T  +V++AC++
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 261/454 (57%), Gaps = 1/454 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSW +++ GY++ G  +E   LF  M+    +RP+ VT+V+ + A GQ   + F
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H +V E  +   + + NAL+ M+ KCG + YAR + D M  KD  S++++++ Y  
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF+ M R  + +W+ +I+   Q N+ E  + L REM A+GV P   T+ S+
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383

Query: 181 FSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +    L  G+ I+  Y V N+    + +  A+ID +AK G +  A ++FD    R+
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERN 443

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A+A HG + +A+ LF ++    I PD +TF  +L++C+HSGLV +    F 
Sbjct: 444 VVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFK 503

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y I+P VEHYACM+ +L +   + EA E    MP++     WGALL    + G+V
Sbjct: 504 EMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNV 563

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G  V D L E++P ++G Y++M+ +Y+   +WD+   +R  M++ G+ K PG S IE 
Sbjct: 564 EIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEV 623

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
            G    F+  D S   SE+IY  L+ +   +++E
Sbjct: 624 EGKFHDFLVADVSHACSEEIYSALKNIYFHLKQE 657



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 12/286 (4%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-----K 135
           NAL+  YA   SLD A  + DEM ++D VS++ ++ GY   G  ++A  LF  M      
Sbjct: 182 NALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGM 241

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
           RP   T  A +S + Q       + L + +   GV  +    +++  +F     ++  +E
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301

Query: 196 I-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           +  G  VK     ++Y  T++++ YAK G L  A+++F     R+++ W+ +I+AY+   
Sbjct: 302 VFDGMEVK-----DVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
              +AV LF EM+  G+ P   T  +VLSACA  G +D    I+        I  +V   
Sbjct: 357 QPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLG 416

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
             ++ + ++   + EA++   +M  + +   W  ++   ++ G  E
Sbjct: 417 NALIDMFAKCGDVGEASKLFDEMAER-NVVSWNTMIMAHAVHGQSE 461


>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
 gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
          Length = 547

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 262/450 (58%), Gaps = 41/450 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           W  +I  YS+ G+Y E  ++F E L    LRP    + SVL+ACG  S+   G ++H  +
Sbjct: 97  WIVLIGAYSRCGYYPEALSVFCE-LQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLI 155

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++ ++ D ++C+ALI MYAK G ++ AR + + M+ KD V+ +A++SGY  HG  E+A+
Sbjct: 156 LKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEAL 215

Query: 129 DLFQVMK----RPGLSTWN-----------------------------------AVISGL 149
           +L + M+    +P L TWN                                   +VISG 
Sbjct: 216 NLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEMVRELFKEMEANGIEPDVVSWTSVISGF 275

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
           VQN R+E   D  R M  +G  P + TISS+    +   N + GKEIHG+++    ++++
Sbjct: 276 VQNFRNEEAFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSLALGVEKDV 335

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           YV TA++D YAK G+ + A+ +F R   R+   W ++I  YA HG  ++A+ LF++M ++
Sbjct: 336 YVRTALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYCNEAIELFHQMKDD 395

Query: 270 GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
             +  D +TFTA+L+ACAH+GLVD    +F  M  +YGI P VEHYACMV V  RA +++
Sbjct: 396 DEKKLDHLTFTAILTACAHAGLVDLGRSLFQLMQSKYGIVPRVEHYACMVDVFGRAGKLA 455

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
           EA + +  MPVKP   VWGALL      G++EL +    HL E+EP + GN ++++++Y+
Sbjct: 456 EAYDLIKTMPVKPDLYVWGALLGACRKHGEIELAEEAAKHLSELEPGSVGNSLLLSDIYA 515

Query: 389 QAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            AG W    ++++ MK+  + K PG SWIE
Sbjct: 516 NAGSWGHVVKLKKMMKKRKMKKFPGCSWIE 545



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 169/365 (46%), Gaps = 38/365 (10%)

Query: 46  VSVLQACGQSSDIVFGMEVH-NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           + +++ CG++ D+ FG  +H   +I+   ++  +     I  YA CG +  AR L D++ 
Sbjct: 32  IELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAK-FIAFYAACGKIKDARILFDKIP 90

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
             +   +  +I  Y   G+  +A+ +F                                E
Sbjct: 91  RTNPRRWIVLIGAYSRCGYYPEALSVFC-------------------------------E 119

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           +Q  G+RP+   I S+     H S    G+++H   +KN  + + YV +A+ID YAK+G 
Sbjct: 120 LQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGE 179

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A+RVF+   G+ L+   A++S YA HG A +A++L  EM   GI+P+ VT+  +++ 
Sbjct: 180 VEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTG 239

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKP 341
            +  G  +   ++F  M    GI+P V  +  ++    +  R  EA +   +M      P
Sbjct: 240 FSQIGEEEMVRELFKEMEAN-GIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHP 298

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVR 400
           ++    +LL   +  G+   GK +  H   +  E +      + ++Y++ G + EA  + 
Sbjct: 299 TSATISSLLPACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKILF 358

Query: 401 EQMKE 405
            +M E
Sbjct: 359 WRMSE 363



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSW S+I+G+ Q    EE    FR MLN+    P   T+ S+L AC    +   G E+
Sbjct: 264 DVVSWTSVISGFVQNFRNEEAFDTFRRMLNAG-FHPTSATISSLLPACASVGNGRCGKEI 322

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   +   ++ D+++  AL+ MYAKCG    A+ L   MS+++  +++++I GY  HG+ 
Sbjct: 323 HGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYC 382

Query: 125 EKAMDLFQVMKRPGLSTWNAV-ISGLVQNNRHEAVLDLVREM 165
            +A++LF  MK       + +  + ++    H  ++DL R +
Sbjct: 383 NEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSL 424



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R+  +WNSMI GY+  G+  E   LF +M +    + D +T  ++L AC  +  +  
Sbjct: 361 MSERNSATWNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDL 420

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G  +   +   +    +++ + C  ++ ++ + G L  A  L+  M  K D   + A++ 
Sbjct: 421 GRSLFQLMQSKYGIVPRVEHYAC--MVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLG 478

Query: 117 GYMVHGFVEKA 127
               HG +E A
Sbjct: 479 ACRKHGEIELA 489


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 269/456 (58%), Gaps = 34/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++I+SW +MI+GY Q  F  E   LF EM N    +PDG    SVL +CG    +  
Sbjct: 313 MVVKNIISWTTMISGYMQNSFDWEAMKLFGEM-NRLGWKPDGFACTSVLTSCGSREALEQ 371

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH + I+++++ D ++ N LI MYAK   L  A+ + D M++++ +SY         
Sbjct: 372 GRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISY--------- 422

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 NA+I G     +    L+L  EM+    +PN  T +++
Sbjct: 423 ----------------------NAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAAL 460

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S+ ++L+ G++ H   VK   D   +V  A++D YAK G +  A+++F+    R +
Sbjct: 461 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 520

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++IS +A HG+A +A+ +F EM+  GIQP+ VTF AVLSAC+H+G V+   + FN+
Sbjct: 521 VCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNS 580

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M G +GI+P  EHYAC+V +L R+ ++ EA EF+ KMP++P+A VW +LL    I+G+VE
Sbjct: 581 MPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 639

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK+  +     +P+++G+YI+++N+++  G W +  +VR++M  S + K PGRSWIE +
Sbjct: 640 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 699

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F+A+DT+  +++ I  +L+ L+  ++  GYV
Sbjct: 700 NKVNVFIARDTTHREAD-IGSVLDILIQHIKGAGYV 734



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 203/441 (46%), Gaps = 81/441 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++++W+SM++ YSQ G+ EE   +F ++       P+   + SV++AC Q   +  
Sbjct: 110 MPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK 169

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H FV+ S    D+++  +LI  Y+K G+++ AR + D++S+K  V+++ II+GY  
Sbjct: 170 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 229

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                               R    L+L  +M+ + V P+   +SS+
Sbjct: 230 CG-------------------------------RSAVSLELFAQMRETNVVPDRYVVSSV 258

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+GGK+IH Y ++   + ++ V   +ID Y K   +   +++FD+   +++
Sbjct: 259 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 318

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           I WT +IS Y  +    +A+ LF EM   G +PD    T+VL++C               
Sbjct: 319 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAY 378

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                               A S L+  A  +F+ M+ Q     +V  Y  M+   S   
Sbjct: 379 TIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQ-----NVISYNAMIEGYSSQE 433

Query: 326 RISEATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCDHL----FEIEPENTG 378
           ++SEA E   +M V   KP+   + AL+  AS    +  G+   + L     +  P  T 
Sbjct: 434 KLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN 493

Query: 379 NYIIMANLYSQAGRWDEADRV 399
               + ++Y++ G  +EA ++
Sbjct: 494 ---ALVDMYAKCGSIEEARKM 511



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 157/320 (49%), Gaps = 32/320 (10%)

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           L  P LRP      ++LQ     + I+    +H  +I S ++ D ++ N LI + +K   
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 99

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           +D AR + D+M  K+ +++S+++S Y   G+ E+A+ +F                     
Sbjct: 100 VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVF--------------------- 138

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
                 +DL R+   SG  PN   ++S+    +    ++ G ++HG+ V++ +D+++YV 
Sbjct: 139 ------VDLQRK---SGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVG 189

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           T++ID Y+K G +  A+ VFD+   ++ + WT II+ Y   G ++ ++ LF +M    + 
Sbjct: 190 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 249

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           PD    ++VLSAC+    ++    I +A   + G +  V     ++   ++  R+    +
Sbjct: 250 PDRYVVSSVLSACSMLEFLEGGKQI-HAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 333 FVSKMPVKPSAKVWGALLYG 352
              +M VK +   W  ++ G
Sbjct: 309 LFDQMVVK-NIISWTTMISG 327


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/511 (33%), Positives = 275/511 (53%), Gaps = 52/511 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K DIV+WN +++G+   G+ EE   + + M      +P+  ++ SVLQA  +   +  G 
Sbjct: 332 KPDIVTWNCLLSGHFLHGYKEEVLNILQRM-QGEGFKPNSSSMTSVLQAISELGFLNMGK 390

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E H +V+ +    D+++  +LI MY K  SL  A+A+ D M +++  ++++++SGY   G
Sbjct: 391 ETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKG 450

Query: 123 FVEKAMDLFQVMKR----PGLSTWNAVISGLVQ--------------------------- 151
             E A+ L   M++    P L TWN +ISG                              
Sbjct: 451 MFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWT 510

Query: 152 ----------NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                     NNR    L    +MQ  GV PN+ +I+ +    +  S L+ GKEIH  ++
Sbjct: 511 ALISGSSQAGNNRDS--LKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSI 568

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           +N +  +++VATA+ID Y+K+  L  A +VF R + ++L  W  +I  +A  G   +A+S
Sbjct: 569 RNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAIS 628

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           +FNEM   G+ PD +TFTA+LSAC +SGL+ + W  F++M   Y I P +EHY CMV +L
Sbjct: 629 VFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLL 688

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
            RA  + EA + +  MP+KP A +WGALL    I  +++  +    +LF++EP N+ NYI
Sbjct: 689 GRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYI 748

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYL 441
           +M NLYS   RW++ D +RE M  +G+      SWI+ +  +  F + +     + +IY 
Sbjct: 749 LMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYF 808

Query: 442 ILERLLGLMREEGYVL--------LDEVEEE 464
            L +L+  M++ GYV         +DEVE++
Sbjct: 809 ELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQ 839



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 143/308 (46%), Gaps = 34/308 (11%)

Query: 4   RDIVSWNSMIAGY-SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R+ + WNS +  + S  G       +F+E+    V+    V  V+ L+ C +  DI  GM
Sbjct: 95  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVA-LKTCTRVMDIWLGM 153

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H  +I+    +D+++  AL+  Y +C  L                             
Sbjct: 154 EIHGCLIKRGFDLDVYLRCALMNFYGRCWGL----------------------------- 184

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             EKA  +F  M  P    WN  I   +Q+ + +  ++L R+MQ S ++    TI  +  
Sbjct: 185 --EKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 242

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                  L   K+IHGY  +   D ++ +   +I  Y+K G L  A+RVFD  + R+   
Sbjct: 243 ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 302

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++IS+YAA G  + A SLF E+ ++ ++PD VT+  +LS     G  ++  +I   M 
Sbjct: 303 WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 362

Query: 303 GQYGIQPS 310
           G+ G +P+
Sbjct: 363 GE-GFKPN 369


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 256/444 (57%), Gaps = 6/444 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +N+MI  Y     Y     ++++ML      +P+  PD  T   V+++C        G +
Sbjct: 80  YNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIF-PDKFTFPFVVKSCAGLMCYDLGKQ 138

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V +   K +  + N+L+ MY KC SLD A  + +EM+++D VS++ +ISG++  G 
Sbjct: 139 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQ 198

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F+ M+   + +W A++SG  +   +   L+  R MQ  G+ P+ +++ S+   
Sbjct: 199 MRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPA 258

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ GK IH YA K  + RNI V  A+I+ YAK G +   +R+FD+   R +I W
Sbjct: 259 CAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISW 318

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           + +I   A HG A +A+ LF EM    I+P+ +TF  +LSACAH+GL+++    F +M  
Sbjct: 319 STMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKR 378

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y I+P VEHY C+V +L  + R+ +A E + KMP+KP + +WG+LL       ++E+  
Sbjct: 379 DYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAV 438

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
              +HL E+EP +TGNY++++NLY+  G+WD   R+R+ M+   + K PG S IE    +
Sbjct: 439 IAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMV 498

Query: 424 QSFVAKDTSGDKSEQIYLILERLL 447
           Q F + D S   S+ IY +L+ L+
Sbjct: 499 QEFASGDDSKPFSKAIYRVLKLLV 522



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 69/302 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M++RD VSWN++I+G+ + G     +A+F EM +  +                       
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237

Query: 38  -------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                  + PD +++VSVL AC Q   +  G  +H +  ++    ++ +CNALI MYAKC
Sbjct: 238 RRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKC 297

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+D  R L D+M+++D +S+S +I G   HG   +A++LFQ                  
Sbjct: 298 GSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQ------------------ 339

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                        EMQ + + PN +T   + S  +H   L  G     Y    + D NI 
Sbjct: 340 -------------EMQKAKIEPNIITFVGLLSACAHAGLLNEGLR---YFESMKRDYNIE 383

Query: 211 VAT----AIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFNE 265
                   +++    +G L  A  +  +   +    IW +++S+  +H +   AV     
Sbjct: 384 PGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEH 443

Query: 266 ML 267
           +L
Sbjct: 444 LL 445



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/410 (20%), Positives = 172/410 (41%), Gaps = 67/410 (16%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           V +L+ C    +IV   ++H  +++  +    ++   ++ +       +YA  L   ++D
Sbjct: 18  VPILKNC---PNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVAD 74

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMK---------RPGLSTWNAVI---SGLVQNN 153
            +   Y+A+I  Y  +     A+ +++ M           P   T+  V+   +GL+   
Sbjct: 75  PNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLM--- 131

Query: 154 RHEAVLDLVREMQAS----GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
                 DL +++       G + N V  +S+  ++    +L    ++     +   +R+ 
Sbjct: 132 ----CYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKV----FEEMTERDA 183

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
                +I  + + G +  A+ +F+  + +++  WTAI+S YA  G  + A+  F  M   
Sbjct: 184 VSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV 243

Query: 270 GIQPDPVTFTAVLSACAHSGLV----------DKA-----WDIFNAMSGQYGIQPSVEH- 313
           GI+PD ++  +VL ACA  G +          DKA       + NA+   Y    S++  
Sbjct: 244 GIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEG 303

Query: 314 --------------YACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASIS 356
                         ++ M+  L+   R  EA E   +M    ++P+   +  LL   + +
Sbjct: 304 RRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHA 363

Query: 357 GDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           G +  G    + +   + IEP    +Y  + NL   +GR D+A  + ++M
Sbjct: 364 GLLNEGLRYFESMKRDYNIEP-GVEHYGCLVNLLGLSGRLDQALELIKKM 412



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 23/212 (10%)

Query: 161 LVREMQASGVRPNAVTISSIF-SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           + R+++A  +R     +  IF  +  +  N+   K+IH + VK    ++ ++ T ++D  
Sbjct: 1   MARKLRALKIR----EMEDIFVPILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVC 56

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-----NNGIQPD 274
                   A  +F R    +  ++ A+I AY  +     A++++ +ML      N I PD
Sbjct: 57  NHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPD 116

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEAT 331
             TF  V+ +CA  GL+   +D+   + G   ++G + +      +V +  +   + +A 
Sbjct: 117 KFTFPFVVKSCA--GLM--CYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAH 172

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +   +M  +  A  W  L     ISG V LG+
Sbjct: 173 KVFEEM-TERDAVSWNTL-----ISGHVRLGQ 198


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 259/465 (55%), Gaps = 39/465 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+V+W +MI G+ + G   E    F EM  + V   + +TVVSVL+A G+  D+ FG  
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA-ANEMTVVSVLKAAGKVEDVRFGRS 225

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH   +E+  +K D++I ++L+ MY KC   D A+ + DEM  ++ V             
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVV------------- 272

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             TW A+I+G VQ+   +  + +  EM  S V PN  T+SS+ S
Sbjct: 273 ------------------TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H   L  G+ +H Y +KN  + N    T +ID Y K G L  A  VF+R   +++  
Sbjct: 315 ACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYT 374

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I+ +AAHG A  A  LF  ML++ + P+ VTF AVLSACAH GLV++   +F +M 
Sbjct: 375 WTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMK 434

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           G++ ++P  +HYACMV +  R   + EA   + +MP++P+  VWGAL     +  D ELG
Sbjct: 435 GRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELG 494

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K+    + +++P ++G Y ++ANLYS++  WDE  RVR+QMK+  + K PG SWIE  G 
Sbjct: 495 KYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGK 554

Query: 423 LQSFVA-KDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESA 466
           L  F+A  D    +S+ +Y  L+ +   MR     L DE+E+ +A
Sbjct: 555 LCEFIAFDDKKPLESDDLYKTLDTVGVQMR-----LPDELEDVTA 594



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 188/434 (43%), Gaps = 73/434 (16%)

Query: 9   WNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           W+S+I  +S G       +   +R M  + V+ P   T   +L+A  +  D     + H 
Sbjct: 70  WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVI-PSRHTFPPLLKAVFKLRD-SNPFQFHA 127

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +++  +  D ++ N+LI  Y+  G  D+A  L D   DKD V+++A+I G++ +G   +
Sbjct: 128 HIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASE 187

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           AM  F                                EM+ +GV  N +T+ S+      
Sbjct: 188 AMVYFV-------------------------------EMKKTGVAANEMTVVSVLKAAGK 216

Query: 187 FSNLKGGKEIHG-YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             +++ G+ +HG Y    R   ++++ ++++D Y K      AQ+VFD    R+++ WTA
Sbjct: 217 VEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTA 276

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-------- 297
           +I+ Y       K + +F EML + + P+  T ++VLSACAH G + +   +        
Sbjct: 277 LIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNS 336

Query: 298 --FNAMSGQYGI--------------------QPSVEHYACMVGVLSRARRISEATEFVS 335
              N  +G   I                    + +V  +  M+   +      +A +   
Sbjct: 337 IEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFY 396

Query: 336 KM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQ 389
            M    V P+   + A+L   +  G VE G+ +   +   F +EP+   +Y  M +L+ +
Sbjct: 397 TMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPK-ADHYACMVDLFGR 455

Query: 390 AGRWDEADRVREQM 403
            G  +EA  + E+M
Sbjct: 456 KGLLEEAKALIERM 469



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 36/258 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++V+W ++IAGY Q   +++   +F EML S V  P+  T+ SVL AC     +  
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV-APNEKTLSSVLSACAHVGALHR 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++I++ I+++      LI +Y KCG L+ A  + + + +K+  +++A+I+G+  
Sbjct: 325 GRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAA 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+   A DLF                                 M +S V PN VT  ++
Sbjct: 385 HGYARDAFDLFYT-------------------------------MLSSHVSPNEVTFMAV 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S  +H   ++ G+ +   ++K R++          ++D + + G L  A+ + +R    
Sbjct: 414 LSACAHGGLVEEGRRLF-LSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472

Query: 239 SL-IIWTAIISAYAAHGD 255
              ++W A+  +   H D
Sbjct: 473 PTNVVWGALFGSCLLHKD 490



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 5/161 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVI---SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           A  L   ++   +  W+++I   SG +  NR  + L   R M+ +GV P+  T   +   
Sbjct: 55  ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFL-AYRHMRRNGVIPSRHTFPPLLKA 113

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +     + H + VK   D + +V  ++I  Y+ +G    A R+FD  + + ++ W
Sbjct: 114 VFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTW 172

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           TA+I  +  +G AS+A+  F EM   G+  + +T  +VL A
Sbjct: 173 TAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 264/474 (55%), Gaps = 34/474 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R I  WN+MIAGYSQ    +E   LF  M  S  L  +  T+  V+ AC +S     
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H FV++  +  D ++ N L+ MY++ G +D A  +  +M D+D V+++ +I+GY+ 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR----PNAVT 176
               E A+ L   M+                        +L R++     R    PN++T
Sbjct: 484 SEHHEDALLLLHKMQ------------------------NLERKVSKGASRVSLKPNSIT 519

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + +I    +  S L  GKEIH YA+KN    ++ V +A++D YAK G L  +++VFD+  
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +++I W  II AY  HG+  +A+ L   M+  G++P+ VTF +V +AC+HSG+VD+   
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASI 355
           IF  M   YG++PS +HYAC+V +L RA RI EA + ++ MP     A  W +LL  + I
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             ++E+G+    +L ++EP    +Y+++AN+YS AG WD+A  VR  MKE G+ K PG S
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           WIE    +  FVA D+S  +SE++   LE L   MR+EGYV     +L  VEE+
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 38/294 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSD 57
           +S+R+ VSWNS+I+       +E     FR ML+  V  P   T+VSV+ AC        
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLPMPEG 217

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           ++ G +VH + +    +++ +I N L+ MY K G L  ++ LL     +D          
Sbjct: 218 LMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD---------- 266

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                L TWN V+S L QN +    L+ +REM   GV P+  TI
Sbjct: 267 ---------------------LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           SS+    SH   L+ GKE+H YA+KN   D N +V +A++D Y     +   +RVFD   
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSG 289
            R + +W A+I+ Y+ +    +A+ LF  M  + G+  +  T   V+ AC  SG
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 36/254 (14%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYA 96
           ++PD     ++L+A     D+  G ++H  V +    +D + + N L+ +Y KCG     
Sbjct: 93  IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             + D +S++++VS                               WN++IS L    + E
Sbjct: 153 YKVFDRISERNQVS-------------------------------WNSLISSLCSFEKWE 181

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG---GKEIHGYAVKNRYDRNIYVAT 213
             L+  R M    V P++ T+ S+ +  S+    +G   GK++H Y ++ + + N ++  
Sbjct: 182 MALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIIN 240

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
            ++  Y K G L  ++ +   F GR L+ W  ++S+   +    +A+    EM+  G++P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 274 DPVTFTAVLSACAH 287
           D  T ++VL AC+H
Sbjct: 301 DEFTISSVLPACSH 314



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 142 WNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           W  ++   V++N   EAVL  V +M   G++P+     ++    +   +++ GK+IH + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYV-DMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 201 VKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            K  Y   ++ VA  +++ Y K G      +VFDR   R+ + W ++IS+  +      A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           +  F  ML+  ++P   T  +V++AC++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSN 211


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/479 (36%), Positives = 271/479 (56%), Gaps = 49/479 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+W ++IAGYSQ G   E   LFR+M+ S  L P+ VT++SVL AC        G E+
Sbjct: 365 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEI 423

Query: 65  HNFVIESHIKM----------DLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYS 112
           H + +++ +            DL + NALI MY+KC S   AR++ D+  + +++ V+++
Sbjct: 424 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 483

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            +I G+  +G    A+ LF                           ++++ E    GV P
Sbjct: 484 VMIGGHAQYGDSNDALKLF---------------------------VEMISE--PYGVAP 514

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIY-VATAIIDTYAKTGFLHGAQR 230
           NA TIS I    +H + ++ GK+IH Y +++ RY+ + Y VA  +ID Y+K G +  A+ 
Sbjct: 515 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 574

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD    +S I WT++++ Y  HG  S+A+ +F++M   G  PD +TF  VL AC+H G+
Sbjct: 575 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 634

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VD+    F++MS  YG+ P  EHYAC + +L+R+ R+ +A   V  MP++P+A VW ALL
Sbjct: 635 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALL 694

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               +  +VEL +   + L E+  EN G+Y +++N+Y+ AGRW +  R+R  MK+SG+ K
Sbjct: 695 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 754

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            PG SW++   G  SF   D S   S QIY +LE L+  ++  GYV      L +V+EE
Sbjct: 755 RPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 813



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 215/465 (46%), Gaps = 72/465 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML----NSPV-LRPDGVTVVSVLQACGQSSDIV 59
           D++SWNS+++ + +         LF +M       P   R D +++V++L ACG    + 
Sbjct: 223 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 282

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              EVH   I +    D+++ NALI  YAKCG ++ A  + + M  KD VS++A+++GY 
Sbjct: 283 QTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 342

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             G  E A +LF+ M++  +     TW AVI+G  Q       L+L R+M  SG  PN V
Sbjct: 343 QSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCV 402

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRY----------DRNIYVATAIIDTYAKTGFL 225
           TI S+ S  +       G EIH Y++KN            D ++ V  A+ID Y+K    
Sbjct: 403 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 462

Query: 226 HGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAV 281
             A+ +FD    + R+++ WT +I  +A +GD++ A+ LF EM++   G+ P+  T + +
Sbjct: 463 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 522

Query: 282 LSACAH-------------------------------------SGLVDKAWDIFNAMSGQ 304
           L ACAH                                      G VD A  +F++MS  
Sbjct: 523 LMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-- 580

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALLYGASISGDVEL 361
              Q S   +  M+       R SEA +   KM      P    +  +LY  S  G V+ 
Sbjct: 581 ---QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 637

Query: 362 GKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           G    D +   + + P    +Y    +L +++GR D+A R  + M
Sbjct: 638 GLSYFDSMSADYGLTPR-AEHYACAIDLLARSGRLDKAWRTVKDM 681



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 146/298 (48%), Gaps = 29/298 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN +I  + + G  +    +   ML +   RPD  T+  VL+ACG+      G   H 
Sbjct: 121 VWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RPDHFTLPHVLKACGELPSYRCGSAFHG 179

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGF 123
            +  +  + +++ICNAL+ MY++CGSL+ A  + DE++ +   D +S+++I+S ++    
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+DLF  M                          L+   + +  R + ++I +I   
Sbjct: 240 AWTALDLFSKMT-------------------------LIVHEKPTNERSDIISIVNILPA 274

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                 +   KE+HG A++N    +++V  A+ID YAK G +  A +VF+  + + ++ W
Sbjct: 275 CGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 334

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            A+++ Y+  G+   A  LF  M    I  D VT+TAV++  +  G   +A ++F  M
Sbjct: 335 NAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 134/307 (43%), Gaps = 14/307 (4%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +++ Y+  G  + A+ + + +       WN +I   ++  R ++ +++   M  +G R
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T+  +        + + G   HG    N ++ N+++  A++  Y++ G L  A  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 232 FDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEML------NNGIQPDPVTFTAVL 282
           FD    R +   I W +I+SA+    +A  A+ LF++M           + D ++   +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 283 SACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
            AC     V +  ++  NA+  + G  P V     ++   ++   +  A +  + M  K 
Sbjct: 273 PACGSLKAVPQTKEVHGNAI--RNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330

Query: 342 SAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
               W A++ G S SG+ E   +   +   E  P +   +  +   YSQ G   EA  + 
Sbjct: 331 VVS-WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 401 EQMKESG 407
            QM  SG
Sbjct: 390 RQMIFSG 396



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           + T ++ +Y   G    A  V +R      + W  +I  +   G    A+++   ML  G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
            +PD  T   VL AC       +    F+ +    G + +V     +V + SR   + EA
Sbjct: 151 TRPDHFTLPHVLKACGELPSY-RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 331 T 331
           +
Sbjct: 210 S 210


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 264/474 (55%), Gaps = 34/474 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R I  WN+MIAGYSQ    +E   LF  M  S  L  +  T+  V+ AC +S     
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H FV++  +  D ++ N L+ MY++ G +D A  +  +M D+D V+++ +I+GY+ 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR----PNAVT 176
               E A+ L   M+                        +L R++     R    PN++T
Sbjct: 484 SEHHEDALLLLHKMQ------------------------NLERKVSKGASRVSLKPNSIT 519

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + +I    +  S L  GKEIH YA+KN    ++ V +A++D YAK G L  +++VFD+  
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +++I W  II AY  HG+  +A+ L   M+  G++P+ VTF +V +AC+HSG+VD+   
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASI 355
           IF  M   YG++PS +HYAC+V +L RA RI EA + ++ MP     A  W +LL  + I
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             ++E+G+    +L ++EP    +Y+++AN+YS AG WD+A  VR  MKE G+ K PG S
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           WIE    +  FVA D+S  +SE++   LE L   MR+EGYV     +L  VEE+
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 38/294 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSD 57
           +S+R+ VSWNS+I+       +E     FR ML+  V  P   T+VSV+ AC        
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLPMPEG 217

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           ++ G +VH + +    +++ +I N L+ MY K G L  ++ LL     +D          
Sbjct: 218 LMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD---------- 266

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                L TWN V+S L QN +    L+ +REM   GV P+  TI
Sbjct: 267 ---------------------LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           SS+    SH   L+ GKE+H YA+KN   D N +V +A++D Y     +   +RVFD   
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSG 289
            R + +W A+I+ Y+ +    +A+ LF  M  + G+  +  T   V+ AC  SG
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 36/254 (14%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYA 96
           ++PD     ++L+A     D+  G ++H  V +    +D + + N L+ +Y KCG     
Sbjct: 93  IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             + D +S++++VS                               WN++IS L    + E
Sbjct: 153 YKVFDRISERNQVS-------------------------------WNSLISSLCSFEKWE 181

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG---GKEIHGYAVKNRYDRNIYVAT 213
             L+  R M    V P++ T+ S+ +  S+    +G   GK++H Y ++ + + N ++  
Sbjct: 182 MALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIIN 240

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
            ++  Y K G L  ++ +   F GR L+ W  ++S+   +    +A+    EM+  G++P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 274 DPVTFTAVLSACAH 287
           D  T ++VL AC+H
Sbjct: 301 DEFTISSVLPACSH 314



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 142 WNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           W  ++   V++N   EAVL  V +M   G++P+     ++    +   +++ GK+IH + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYV-DMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 201 VKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            K  Y   ++ VA  +++ Y K G      +VFDR   R+ + W ++IS+  +      A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           +  F  ML+  ++P   T  +V++AC++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSN 211


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/479 (36%), Positives = 271/479 (56%), Gaps = 49/479 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+W ++IAGYSQ G   E   LFR+M+ S  L P+ VT++SVL AC        G E+
Sbjct: 372 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEI 430

Query: 65  HNFVIESHIKM----------DLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYS 112
           H + +++ +            DL + NALI MY+KC S   AR++ D+  + +++ V+++
Sbjct: 431 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 490

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            +I G+  +G    A+ LF                           ++++ E    GV P
Sbjct: 491 VMIGGHAQYGDSNDALKLF---------------------------VEMISE--PYGVAP 521

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIY-VATAIIDTYAKTGFLHGAQR 230
           NA TIS I    +H + ++ GK+IH Y +++ RY+ + Y VA  +ID Y+K G +  A+ 
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 581

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD    +S I WT++++ Y  HG  S+A+ +F++M   G  PD +TF  VL AC+H G+
Sbjct: 582 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 641

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VD+    F++MS  YG+ P  EHYAC + +L+R+ R+ +A   V  MP++P+A VW ALL
Sbjct: 642 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALL 701

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               +  +VEL +   + L E+  EN G+Y +++N+Y+ AGRW +  R+R  MK+SG+ K
Sbjct: 702 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 761

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            PG SW++   G  SF   D S   S QIY +LE L+  ++  GYV      L +V+EE
Sbjct: 762 RPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 820



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 25/377 (6%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML----NSPV-LRPDGVTVVSVLQACGQSSDIV 59
           D++SWNS+++ + +         LF +M       P   R D +++V++L ACG    + 
Sbjct: 230 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 289

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              EVH   I +    D+++ NALI  YAKCG ++ A  + + M  KD VS++A+++GY 
Sbjct: 290 QTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 349

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             G  E A +LF+ M++  +     TW AVI+G  Q       L+L R+M  SG  PN V
Sbjct: 350 QSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCV 409

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRY----------DRNIYVATAIIDTYAKTGFL 225
           TI S+ S  +       G EIH Y++KN            D ++ V  A+ID Y+K    
Sbjct: 410 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 469

Query: 226 HGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAV 281
             A+ +FD    + R+++ WT +I  +A +GD++ A+ LF EM++   G+ P+  T + +
Sbjct: 470 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 529

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMPVK 340
           L ACAH   +     I   +   +  + S    A C++ + S+   +  A      M  K
Sbjct: 530 LMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK 589

Query: 341 PSAKVWGALLYGASISG 357
            SA  W +++ G  + G
Sbjct: 590 -SAISWTSMMTGYGMHG 605



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 146/298 (48%), Gaps = 29/298 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN +I  + + G  +    +   ML +   RPD  T+  VL+ACG+      G   H 
Sbjct: 128 VWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RPDHFTLPHVLKACGELPSYRCGSAFHG 186

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGF 123
            +  +  + +++ICNAL+ MY++CGSL+ A  + DE++ +   D +S+++I+S ++    
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+DLF  M                          L+   + +  R + ++I +I   
Sbjct: 247 AWTALDLFSKMT-------------------------LIVHEKPTNERSDIISIVNILPA 281

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                 +   KE+HG A++N    +++V  A+ID YAK G +  A +VF+  + + ++ W
Sbjct: 282 CGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 341

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            A+++ Y+  G+   A  LF  M    I  D VT+TAV++  +  G   +A ++F  M
Sbjct: 342 NAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 134/307 (43%), Gaps = 14/307 (4%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +++ Y+  G  + A+ + + +       WN +I   ++  R ++ +++   M  +G R
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T+  +        + + G   HG    N ++ N+++  A++  Y++ G L  A  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 232 FDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEML------NNGIQPDPVTFTAVL 282
           FD    R +   I W +I+SA+    +A  A+ LF++M           + D ++   +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 283 SACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
            AC     V +  ++  NA+  + G  P V     ++   ++   +  A +  + M  K 
Sbjct: 280 PACGSLKAVPQTKEVHGNAI--RNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337

Query: 342 SAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
               W A++ G S SG+ E   +   +   E  P +   +  +   YSQ G   EA  + 
Sbjct: 338 VVS-WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 401 EQMKESG 407
            QM  SG
Sbjct: 397 RQMIFSG 403



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           + T ++ +Y   G    A  V +R      + W  +I  +   G    A+++   ML  G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
            +PD  T   VL AC       +    F+ +    G + +V     +V + SR   + EA
Sbjct: 158 TRPDHFTLPHVLKACGELPSY-RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 331 T 331
           +
Sbjct: 217 S 217


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 260/450 (57%), Gaps = 2/450 (0%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS-DIVFGMEVH 65
           V+WN++I+G+++GG + E    F +M  +    P  VT VSVL ACG+ + D++ GM+VH
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAA-PTPVTYVSVLSACGKGTRDVLLGMQVH 146

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V+ S +  DL + NAL+ MYA+C  +  A  + D M  +  VS+++++SG    G V+
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A DLF  M      +W A+I G V   R    L++ REMQ S V  +  T+ S+ +  +
Sbjct: 207 EARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACA 266

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L+ G+ +  Y  +     + +V  A+ID Y+K G +  A  VF     R    WTA
Sbjct: 267 QLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTA 326

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           II   A +G   +A+ +F+ M+     PD VTF  VL+AC H+GLVDK  + F +M   Y
Sbjct: 327 IILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAY 386

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            I P+V HY C++ +L RA +I+EA + + +MP+ P++ +WG LL    + G+ E+G+ V
Sbjct: 387 NIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELV 446

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
            + L E++PEN+  YI+++N+Y++  RW++  R+R  + E G+ K PG S IE  G +  
Sbjct: 447 AERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHE 506

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           FVA D S   S++IY  LE ++  +   GY
Sbjct: 507 FVAGDQSHPMSKEIYSKLESIISDLNNVGY 536



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 6/189 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW +MI GY     + E   +FREM  S V   D  T+VSV+ AC Q   +  
Sbjct: 215 MPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNV-SADEFTMVSVITACAQLGALEM 273

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  ++    IKMD ++ NALI MY+KCGS++ A  +   M  +D+ +++AII G  V
Sbjct: 274 GEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAV 333

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-----MQASGVRPNAV 175
           +G+ E+A+++F  M R   +       G++    H  ++D  RE     ++A  + PN V
Sbjct: 334 NGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVV 393

Query: 176 TISSIFSLF 184
               I  L 
Sbjct: 394 HYGCIIDLL 402



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 29/334 (8%)

Query: 39  RPDGVTVVSVLQA----CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94
           RPD  T  ++L+A     G S        VH  V+   +  +  + ++L+  Y   G   
Sbjct: 16  RPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGA 75

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLV 150
            ARAL+ E      V+++A+ISG+   G   ++   F  M R G +    T+ +V+S   
Sbjct: 76  AARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACG 133

Query: 151 QNNRHEAVLDLVREMQ------ASGVRPNAVTISSIFSLFSHFSNLKGG-KEIHGYAVKN 203
           +  R     D++  MQ       SGV P+    +++  +++  +++    K   G  V  
Sbjct: 134 KGTR-----DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQV-- 186

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
              R++   T+++   A+ G +  A+ +FDR   R  + WTA+I  Y       +A+ +F
Sbjct: 187 ---RSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMF 243

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            EM  + +  D  T  +V++ACA  G ++    +   MS Q GI+        ++ + S+
Sbjct: 244 REMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSK 302

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              I  A +    M  +     W A++ G +++G
Sbjct: 303 CGSIERALDVFKGMHHRDKF-TWTAIILGLAVNG 335


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 267/469 (56%), Gaps = 14/469 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN+MI+GY+Q G   E + LF E   SPV   D  T  +++    Q+  +  
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPV--RDVFTWTAMVSGYVQNGMLDE 203

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              V + + E +     W  NA+I  Y +C  +D AR L + M  ++  S++ +I+GY  
Sbjct: 204 ARRVFDGMPEKNSVS--W--NAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQ 259

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G + +A + F  M +    +W A+I+G  Q+   E  L L  EM+  G R N  T +S 
Sbjct: 260 NGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 319

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L+ GK++HG  VK   +   YV  A++  Y K G +  A  VF+  + + +
Sbjct: 320 LSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEV 379

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ YA HG   +A+ LF  M   GI PD VT   VLSAC+H+GLVDK  + F +
Sbjct: 380 VSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYS 439

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI  + +HY CM+ +L RA R+ +A   +  MP +P A  WGALL  + I G+ E
Sbjct: 440 MTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTE 499

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     +FE+EP+N+G Y++++NLY+ +GRW +  R+R +M++ G+ K+PG SW+E  
Sbjct: 500 LGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQ 559

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F   D+   + ++IY  LE L   M++EGYV     +L +VEEE
Sbjct: 560 NKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE 608



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 198/446 (44%), Gaps = 68/446 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+M++GY+Q G+ +E K +F EM     +  +G+    V     + +  +F
Sbjct: 56  MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 115

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                    ES    +L   N ++G Y K   L  AR + D M ++DEVS++ +ISGY  
Sbjct: 116 ---------ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQ 166

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G + +A  LF+      + TW A++SG VQN     +LD  R +       N+V+ ++I
Sbjct: 167 NGELLEAQRLFEESPVRDVFTWTAMVSGYVQN----GMLDEARRVFDGMPEKNSVSWNAI 222

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +     +   +E+     +    +N+     +I  YA+ G +  A+  FDR   R  
Sbjct: 223 IAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS 278

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           I W AII+ YA  G   +A+ LF EM  +G + +  TFT+ LS CA              
Sbjct: 279 ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 338

Query: 288 ----------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                                  G +D A+ +F  +      +  V  +  M+   +R  
Sbjct: 339 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE-----EKEVVSWNTMIAGYARHG 393

Query: 326 RISEAT---EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-----NT 377
              EA    E + K  + P       +L   S +G V+ G    ++ + +  +     N+
Sbjct: 394 FGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT---EYFYSMTQDYGITANS 450

Query: 378 GNYIIMANLYSQAGRWDEADRVREQM 403
            +Y  M +L  +AGR D+A  + + M
Sbjct: 451 KHYTCMIDLLGRAGRLDDAQNLMKNM 476



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 136/267 (50%), Gaps = 20/267 (7%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           +L  AR L D+M ++D VS++A++SGY  +G+V++A ++F  M      +WN +++  VQ
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQ 104

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIY 210
           N R    ++  R +  S      ++ + +   +     +K  + +    + +R  +R+  
Sbjct: 105 NGR----IEDARRLFESKADWELISWNCMMGGY-----VKRNRLVDARGIFDRMPERDEV 155

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
               +I  YA+ G L  AQR+F+    R +  WTA++S Y  +G   +A  +F+ M    
Sbjct: 156 SWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM---- 211

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
            + + V++ A+++       +D+A ++F AM  Q     +V  +  M+   ++   I++A
Sbjct: 212 PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQA 266

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISG 357
             F  +MP + S   W A++ G + SG
Sbjct: 267 RNFFDRMPQRDSIS-WAAIIAGYAQSG 292


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 256/444 (57%), Gaps = 2/444 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWN++I GY + G   E   +F  M+    + PD VT++ V+    Q  D+  G  
Sbjct: 184 RDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRR 243

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +V ESH ++  + + N ++ MY KCG L+ A+++ + +  K  VS++ +I GY   G
Sbjct: 244 LHGYV-ESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFG 302

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A  +F  M    +  WNA+++G VQ  R +  L L  +MQ + V P+ +T+ ++ S
Sbjct: 303 LMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLS 362

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S    L+ G  +H Y  + R   ++ + T ++D Y+K G +  A RVF     ++ + 
Sbjct: 363 ACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALT 422

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+IS  A HG A  A+  F  M+  G+QPD +TF  VLSAC H+GLV +  + F+ M 
Sbjct: 423 WTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMV 482

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +Y ++  ++HY+CMV +L RA  + EA   V+ MP++P A VWGAL +   + G++ LG
Sbjct: 483 SKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLG 542

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     L E++P ++G Y+++AN+Y++A    +AD+VR  M+  G+ K+PG S IE +G 
Sbjct: 543 EKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGV 602

Query: 423 LQSFVAKDTSGDKSEQIYLILERL 446
           +  F+ KD S      IY  L  +
Sbjct: 603 VHEFIVKDKSHTDIAAIYDCLHEI 626



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 15/349 (4%)

Query: 20  GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79
           G    C  L+  +L S   RPD +T   +L+AC +  +  +G  V   V+      D+++
Sbjct: 100 GLVTRCLPLYCSLLRSA--RPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFV 157

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
            NA +   A C S+  AR L D    +D VS++ +I GY+  G   +A+++F  M   G 
Sbjct: 158 VNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGA 217

Query: 140 STWNAV-ISGLVQNNRHEAVLDLVREM----QASGVRPNAVTISSIFSLFSHFSNLKGGK 194
            T + V + G+V  +     L+L R +    ++ GVR     ++ +  ++    +L+  K
Sbjct: 218 VTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAK 277

Query: 195 EIHGYAVKNRYDRNIYVA-TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
                +V    D+   V+ T +I  YA+ G +  A++VFD    R +  W A+++ Y   
Sbjct: 278 -----SVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQC 332

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
               +A+ LF++M    ++PD +T   +LSAC+  G ++    + + +  +  +  SV  
Sbjct: 333 KRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYID-RRRVSLSVML 391

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
              +V + S+   I +A     ++P K +A  W A++ G +  G  ++ 
Sbjct: 392 GTNLVDMYSKCGNIEKAIRVFKEIPEK-NALTWTAMISGLANHGHADVA 439



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 126/289 (43%), Gaps = 63/289 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM---------------------------- 32
           + K+ IVSW +MI GY+Q G  ++ + +F EM                            
Sbjct: 283 IDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLF 342

Query: 33  --LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
             +   ++ PD +T+V++L AC Q   +  GM VH+++    + + + +   L+ MY+KC
Sbjct: 343 HDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKC 402

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G+++ A  +  E+ +K+ ++++A+ISG   HG  + A+  FQ                  
Sbjct: 403 GNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQ------------------ 444

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV-KNRYDRNI 209
                         M   G++P+ +T   + S   H   +K G+E     V K   +R +
Sbjct: 445 -------------RMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKM 491

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGDAS 257
              + ++D   + G+L  A+ + +        ++W A+  A   HG+ +
Sbjct: 492 KHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNIT 540


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 249/457 (54%), Gaps = 36/457 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MIAGY Q G +EE  A F  M  + V  P+  T+VSVL ACG    +  G  
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADV-SPNQSTMVSVLSACGHLRSLELGKW 280

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           + ++V +     +L + NAL+ MY+KCG +  AR L D M DKD +              
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVI-------------- 326

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +I G    + +E  L L   M    V PN VT  ++   
Sbjct: 327 -----------------LWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPA 369

Query: 184 FSHFSNLKGGKEIHGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +    L  GK +H Y  KN        N+ + T+II  YAK G +  A++VF     RS
Sbjct: 370 CASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRS 429

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W A+IS  A +G A +A+ LF EM+N G QPD +TF  VLSAC  +G V+     F+
Sbjct: 430 LASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFS 489

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M+  YGI P ++HY CM+ +L+R+ +  EA   +  M ++P   +WG+LL    I G V
Sbjct: 490 SMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQV 549

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E G++V + LFE+EPEN+G Y++++N+Y+ AGRWD+  ++R ++ + G+ K+PG + IE 
Sbjct: 550 EFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEI 609

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G +  F+  D    +SE I+ +L+ +  L+ E G+V
Sbjct: 610 DGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFV 646



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 188/366 (51%), Gaps = 9/366 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I  WN++I  +S          LF +ML+S  L P+  T  S+ ++C +S       ++
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSG-LYPNSHTFPSLFKSCAKSKATHEAKQL 149

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   ++  + +   +  +LI MY++ G L +AR + D+ + +D VS++A+I+GY+  G V
Sbjct: 150 HAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHV 209

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A  LF  +    + +WNA+I+G VQ+ R E  L     MQ + V PN  T+ S+ S  
Sbjct: 210 DDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSAC 269

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
            H  +L+ GK I  +     + +N+ +  A++D Y+K G +  A+++FD  + + +I+W 
Sbjct: 270 GHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWN 329

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-W---DIFNA 300
            +I  Y       +A+ LF  ML   + P+ VTF AVL ACA  G +D   W    I   
Sbjct: 330 TMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKN 389

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           + G   +  +V  +  ++ + ++   +  A +    M  +  A  W A++ G +++G  E
Sbjct: 390 LKGTGNVN-NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAE 447

Query: 361 --LGKF 364
             LG F
Sbjct: 448 RALGLF 453



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 15/162 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D++ WN+MI GY     YEE   LF  ML   V  P+ VT ++VL AC     +  
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENV-TPNDVTFLAVLPACASLGALDL 378

Query: 61  GMEVHNFVIESHIK-------MDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
           G  VH + I+ ++K       + LW   ++I MYAKCG ++ A  +   M  +   S++A
Sbjct: 379 GKWVHAY-IDKNLKGTGNVNNVSLW--TSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNA 435

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQ 151
           +ISG  ++G  E+A+ LF+ M   G      T+  V+S   Q
Sbjct: 436 MISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 10/198 (5%)

Query: 127 AMDLFQVM--KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           A+ LF  +  + P +  WN +I          + L L  +M  SG+ PN+ T  S+F   
Sbjct: 78  ALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSC 137

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +        K++H +A+K     + +V T++I  Y++ G L  A+ VFD+   R  + +T
Sbjct: 138 AKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFT 197

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+ Y + G    A  LF+E+       D V++ A+++    SG  ++A   F  M  +
Sbjct: 198 ALITGYVSEGHVDDARRLFDEI----PAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ-E 252

Query: 305 YGIQPSVEHYACMVGVLS 322
             + P+    + MV VLS
Sbjct: 253 ADVSPN---QSTMVSVLS 267


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 274/476 (57%), Gaps = 20/476 (4%)

Query: 5   DIVSWNSMIAGYS-----QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           ++  +N++I G S     +  F+   KAL   +L      PD +T   +++AC Q  +  
Sbjct: 81  NLFIYNALIRGCSTSENPENSFHYYIKALRFGLL------PDNITHPFLVKACAQLENAP 134

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            GM+ H   I+   + D ++ N+L+ MYA  G ++ AR++   M   D VS++ +I+GY 
Sbjct: 135 MGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYH 194

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G  + A +LF  M    L TW+ +ISG  +NN  E  ++    +QA GV  N   +  
Sbjct: 195 RCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVG 254

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S  +H   L  G++ H Y ++N+   N+ + TA++D YA+ G +  A  VF++   + 
Sbjct: 255 VISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKD 314

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ WTA+I+  A HG A KA+  F+EM   G  P  +TFTAVL+AC+H+G+V++  +IF 
Sbjct: 315 VLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFE 374

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   +G++P +EHY CMV +L RA ++ +A +FV KMPVKP+A +W ALL    I  +V
Sbjct: 375 SMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNV 434

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+ V   L E++PE +G+Y++++N+Y++A +W +   +R+ MK+ G+ K PG S IE 
Sbjct: 435 EVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEI 494

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILER-LLGLMREEGYV--------LLDEVEEESA 466
            G +  F   D +  + E+I  I E  +L  ++  GYV         +DE E+E A
Sbjct: 495 DGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGA 550



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 35/230 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M + D+VSW  MIAGY + G  +  + LF  M    +                       
Sbjct: 178 MCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETF 237

Query: 38  --LRPDGV-----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
             L+ +GV      +V V+ +C     +  G + H +V+ + + ++L +  A++ MYA+C
Sbjct: 238 EALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARC 297

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVI 146
           G+++ A  + +++ +KD + ++A+I+G  +HG+ EKA+  F  M + G      T+ AV+
Sbjct: 298 GNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVL 357

Query: 147 SGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKE 195
           +        E  L++   M+   GV P       +  L      L+  ++
Sbjct: 358 TACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEK 407



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 14/244 (5%)

Query: 134 MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
           ++ P L  +NA+I G   +   E       +    G+ P+ +T   +    +   N   G
Sbjct: 77  IQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMG 136

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
            + HG A+K+ ++++ YV  +++  YA  G ++ A+ VF R     ++ WT +I+ Y   
Sbjct: 137 MQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRC 196

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
           GDA  A  LF+ M    +    VT++ ++S  A +   +KA + F A+  + G+   V +
Sbjct: 197 GDAKSARELFDRMPERNL----VTWSTMISGYARNNCFEKAVETFEALQAE-GV---VAN 248

Query: 314 YACMVGVLSRARRI------SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
              MVGV+S    +       +A E+V +  +  +  +  A++   +  G+VE    V +
Sbjct: 249 ETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFE 308

Query: 368 HLFE 371
            L E
Sbjct: 309 QLPE 312



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 19/234 (8%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY--AKTGFLHGAQRVFDRFKGRSL 240
           L    SN +  K IH + ++     +++ A+ +I     + T  LH A RV  + +  +L
Sbjct: 23  LLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNL 82

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVDKAW 295
            I+ A+I   +   +   +   + + L  G+ PD +T   ++ ACA       G+     
Sbjct: 83  FIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQ 142

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I +     + +Q S+ H    VG ++ AR + +          +     W  ++ G   
Sbjct: 143 AIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRM-------CRFDVVSWTCMIAGYHR 195

Query: 356 SGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            GD +  +     LF+  PE N   +  M + Y++   +++A    E ++  G+
Sbjct: 196 CGDAKSAR----ELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGV 245


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 260/445 (58%), Gaps = 6/445 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++  WNS+I GY++   Y E   LF +M +S VL PD  T+ ++ +   +   +  
Sbjct: 84  LQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVL-PDDFTLSTLSKVSSELGALFS 142

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   I      D  + N+++ MY KCG+ + +R + DEM+ ++  S++ +I+GY V
Sbjct: 143 GKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAV 202

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISS 179
            G +     +F  MK   + +W A+I+G V+N   +  L L R+MQ   G+ PN V++ S
Sbjct: 203 SGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVS 262

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF-DRFKGR 238
           +    S FS L  G++IHG+AV+   +  + +  A+ID Y+K G L  A+RVF D    +
Sbjct: 263 VLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCK 322

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             I W+++IS Y  HG   +A+ L+++ML  GI+PD +T   +LSAC+ SGLV++  +I+
Sbjct: 323 DAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIY 382

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +++   YGI+P++E +AC+V +L RA ++  A +F+  MPV+P   VWGAL+  + I GD
Sbjct: 383 SSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGD 442

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E+ +     L ++EPEN  NY+ ++NLY+ + RWD    VR  MK+  L K+PG SWI 
Sbjct: 443 LEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWIS 502

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLIL 443
            +     F     S     Q+ LIL
Sbjct: 503 INNKTHCFYTLKYS---LRQVCLIL 524



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 130/285 (45%), Gaps = 45/285 (15%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +F  ++   +  WN++I+G  +N  +     L  +M +S V P+  T+S++  + S    
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK---------------------------- 221
           L  GK IHG +++  +  +  VA +I+  Y K                            
Sbjct: 140 LFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAG 199

Query: 222 ---TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVT 277
              +G L   +RVFDR K R++  WTA+I+ Y  +GD+ +A+SLF +M + +GI+P+ V+
Sbjct: 200 YAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVS 259

Query: 278 FTAVLSAC-AHSGLVD----KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
             +VL AC + SGL+       + +   ++ +  +  ++       G L  ARR+ E   
Sbjct: 260 LVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS 319

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPE 375
                     A  W +++ G  + G  +    + D + +  I P+
Sbjct: 320 LCKD------AISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 358



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 186 HFS----NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           HFS    +LK  ++ H   +     +N  +AT +I  YA     + ++ VFD  + +++ 
Sbjct: 31  HFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVF 90

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +W ++I+ YA +   ++A  LFN+M ++ + PD  T + +    +  G +     I +  
Sbjct: 91  LWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSI-HGK 149

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S + G          ++ +  +     E+ +   +M ++ S   W  L+ G ++SG++ +
Sbjct: 150 SIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGS-WNVLIAGYAVSGNLVV 208

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           G+ V D +   +  N  ++  M N Y + G  DEA  +   M+
Sbjct: 209 GRRVFDRM---KCRNVFSWTAMINGYVENGDSDEALSLFRDMQ 248


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 268/472 (56%), Gaps = 10/472 (2%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           SK+  V+WN+MI+GY+  G Y E   +FR+M+ S + + D  T  SV+  C  +     G
Sbjct: 250 SKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKI-QLDEFTFTSVISVCANAGCFRLG 308

Query: 62  MEVHNFVIES----HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
            E+H + +++       + + + NALI  Y KCG +D A+ + ++M ++D VS++ I+SG
Sbjct: 309 KEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSG 368

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y+    +++A   F  M    + +W  +ISGL Q    E  L     M+  G  P     
Sbjct: 369 YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAF 428

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +      S   +LK G+++H   V+  Y+ ++    A+I  YA+ G +  A  +F     
Sbjct: 429 AGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC 488

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
              I W A+I+A   HG  ++A+ LF EML  GI PD ++F  V+SAC+H+GLV +    
Sbjct: 489 VDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKY 548

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F++M   YG+ P  EHYA ++ +L RA + SEA E +  MP +P A +W ALL G  I G
Sbjct: 549 FDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHG 608

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +++LG    + LFE++P++ G Y++++N+Y+ AG+W++  +VR+ M++ G+ K PG SWI
Sbjct: 609 NIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWI 668

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    + SF+  D +  +  QIY  LE+L+  MR+ GYV     +L +VE +
Sbjct: 669 EVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESD 720



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 151/320 (47%), Gaps = 20/320 (6%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI-VFGM 62
           RD V +N+MI  YS          LF +M      RPD  T  SVL A    ++      
Sbjct: 110 RDSVFYNAMITAYSHNHDGHAAIELFCDMQRDN-FRPDNYTFTSVLGALALVAEKEKHCQ 168

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGS---------LDYARALLDEMSDKDEVSYSA 113
           ++H  V++S       + NALI  Y KC +         +  AR L DEM ++DE+S++ 
Sbjct: 169 QLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTT 228

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           II+GY+ +  ++ A +      +     WNA+ISG      +    ++ R+M  S ++ +
Sbjct: 229 IITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLD 288

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKN----RYDRNIYVATAIIDTYAKTGFLHGAQ 229
             T +S+ S+ ++    + GKE+H Y +K       D  + V  A+I  Y K G +  AQ
Sbjct: 289 EFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQ 348

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            +F++   R L+ W  I+S Y       +A S FNEM    I    +++  ++S  A  G
Sbjct: 349 EIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNI----LSWIIMISGLAQIG 404

Query: 290 LVDKAWDIFNAMSGQYGIQP 309
             ++A   FN M  Q G +P
Sbjct: 405 FAEEALKFFNRMKLQ-GFEP 423



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 175/423 (41%), Gaps = 59/423 (13%)

Query: 40  PDGVTVV-----SVLQACGQSSDIVFGM--EVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           PD +        S+LQ C   S I + +   VH  +I S  +    I N LI +Y+K   
Sbjct: 4   PDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSK 63

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST--WNAVISGLV 150
           L+YAR L DE+   D V+ + +I+ Y   G ++ +  +F         +  +NA+I+   
Sbjct: 64  LNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYS 123

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL-KGGKEIHGYAVKNRYDRNI 209
            N+   A ++L  +MQ    RP+  T +S+    +  +   K  +++H   VK+      
Sbjct: 124 HNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVT 183

Query: 210 YVATAIIDTYAKT---------GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS--- 257
            V  A+I +Y K            +  A+++FD    R  + WT II+ Y  + D     
Sbjct: 184 SVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAK 243

Query: 258 ----------------------------KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
                                       +A  +F +M+ + IQ D  TFT+V+S CA++G
Sbjct: 244 EFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAG 303

Query: 290 LVDKAWDI---FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
                 ++   F           ++     ++    +  ++  A E  +KMP +     W
Sbjct: 304 CFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVS-W 362

Query: 347 GALLYG-ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             +L G  ++    E   F      E+  +N  ++IIM +  +Q G  +EA +   +MK 
Sbjct: 363 NIILSGYVNVRCMDEAKSF----FNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKL 418

Query: 406 SGL 408
            G 
Sbjct: 419 QGF 421


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 265/468 (56%), Gaps = 3/468 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K  +  +N +I  YS  G + +C +L+ +M       P+  +   +  AC   S    
Sbjct: 42  IPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGC-SPNEHSFTFLFSACASLSSHQQ 100

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   ++S    D++   AL+ MYAK G L  AR   DEM+ +D  +++++I+GY  
Sbjct: 101 GRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYAR 160

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISS 179
            G +E A++LF++M    +++W A+ISG  QN ++   L +   M+  + +RPN VT++S
Sbjct: 161 CGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLAS 220

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
           +    ++   L+ G+ I  YA  N Y +N+YV+ A+++ YA+ G +  A  VF+   GR 
Sbjct: 221 VLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRR 280

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L  W ++I   A HG   +A+ LF +ML  G  PD VTF  VL AC H G+V +    F
Sbjct: 281 NLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFF 340

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   + I P +EHY CMV +L RA  + EA + + +MP++P + VWG LL   S  G 
Sbjct: 341 ESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGH 400

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL +     LFE+EP N GNY+I++N+Y+ AGRWD   R+R+ MK   + K  G S+IE
Sbjct: 401 VELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIE 460

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESA 466
             G +  F+ +D S  +S++IY +L+ +   M+  G V   + E E+A
Sbjct: 461 EGGHIHKFIVEDRSHSRSDEIYALLDEVSMKMKLHGNVNDSDSEIETA 508



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 138/346 (39%), Gaps = 78/346 (22%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +  A  LF  + +P +  +N +I     +  H     L  +M   G  PN  + + +FS 
Sbjct: 32  IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--------- 234
            +  S+ + G+ +H + VK+ +  +++  TA++D YAK G L  A++ FD          
Sbjct: 92  CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151

Query: 235 ----------------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-I 271
                                    R++  WTA+IS YA +G  +KA+S+F  M     +
Sbjct: 152 NSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEM 211

Query: 272 QPDPVTFTAVLSACAH-----------------------------------SGLVDKAWD 296
           +P+ VT  +VL ACA+                                    G +DKAW 
Sbjct: 212 RPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWG 271

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGA 353
           +F  + G+  +      +  M+  L+   R  EA E   KM      P    +  +L   
Sbjct: 272 VFEEIDGRRNLCS----WNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLAC 327

Query: 354 SISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEA 396
           +  G V  G+   + +   F I P+   +Y  M +L  +AG   EA
Sbjct: 328 THGGMVVEGQHFFESMERDFSIAPK-LEHYGCMVDLLGRAGELREA 372


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/494 (33%), Positives = 272/494 (55%), Gaps = 42/494 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K DI++WNS+++G+   G YE      R  L S   +PD  ++ S LQA  +      G 
Sbjct: 330 KPDIITWNSLLSGHLLQGSYENVLTNIRS-LQSAGFKPDSCSITSALQAVIELGYFNLGK 388

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAK-------------------C------------G 91
           E+H +++ S ++ D+++C +L+ MY K                   C            G
Sbjct: 389 EIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKG 448

Query: 92  SLDYARALLDEMSDK----DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWN 143
             D A  LL +M ++    D V++++++SGY + G  E+A+ +   +K  GL+    +W 
Sbjct: 449 LFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWT 508

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A+ISG  QN  +   L    +MQ   V+PN+ TIS++    +  S LK G+EIH +++K+
Sbjct: 509 AMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKH 568

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            +  +IY+ATA+ID Y+K G L  A  VF   K ++L  W  ++  YA +G   +  +LF
Sbjct: 569 GFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLF 628

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           + M   GI+PD +TFTA+LS C +SGLV   W  F++M   Y I P++EHY+CMV +L +
Sbjct: 629 DNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGK 688

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A  + EA +F+  MP K  A +WGA+L    +  D+++ +    +LF +EP N+ NY++M
Sbjct: 689 AGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLM 748

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGR-SWIECSGGLQSFVAKDTSGDKSEQIYLI 442
            N+YS   RW + +R++E M   G+ KIP   SWI+    +  F  +  S  +  +IY  
Sbjct: 749 MNIYSTFERWGDVERLKESMTAMGV-KIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFD 807

Query: 443 LERLLGLMREEGYV 456
           L +L+  +++ GYV
Sbjct: 808 LYQLISEIKKLGYV 821



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 217/410 (52%), Gaps = 14/410 (3%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+++    +   +E+   L R M ++     DG T+V +LQACG+   +  G ++H +V
Sbjct: 200 WNTIVMANLRSERWEDALELSRRMQSASAKATDG-TIVKLLQACGKLRALNEGKQIHGYV 258

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I      +  ICN+++ MY++   L+ ARA+ D   D +  S+++IIS Y V+G +  A 
Sbjct: 259 IRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAW 318

Query: 129 DLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           DLF+ M+    +P + TWN+++SG +    +E VL  +R +Q++G +P++ +I+S     
Sbjct: 319 DLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAV 378

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                   GKEIHGY ++++ + ++YV T+++D Y K   L  A+ VF   K +++  W 
Sbjct: 379 IELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWN 438

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++IS Y   G    A  L  +M   GI+ D VT+ +++S  + SG  ++A  + N +   
Sbjct: 439 SLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKS- 497

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVEL 361
            G+ P+V  +  M+    +    ++A +F S+M    VKP++     LL   +    ++ 
Sbjct: 498 LGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKK 557

Query: 362 GKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
           G+ +  H F ++     +  I   + ++YS+ G+   A  V   +KE  L
Sbjct: 558 GEEI--HCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTL 605



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 184/423 (43%), Gaps = 68/423 (16%)

Query: 4   RDIVSWNSMIAGY-SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R+ + WNS +  + S GG   E   +F+E+ +  V + D   +  VL+ C    ++  GM
Sbjct: 93  RNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGV-KFDSKALTVVLKICLALMELWLGM 151

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           EVH  +++   ++D+ +  ALI +Y KC  +D A  + DE   +++              
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDF------------- 198

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              WN ++   +++ R E  L+L R MQ++  +    TI  +  
Sbjct: 199 ------------------LWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQ 240

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                  L  GK+IHGY ++     N  +  +I+  Y++   L  A+ VFD  +  +L  
Sbjct: 241 ACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLAS 300

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +IIS+YA +G  + A  LF EM ++ I+PD +T+ ++LS     G  +       ++ 
Sbjct: 301 WNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQ 360

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
              G +P     +C   + S  + + E   F             G  ++G  +   +E  
Sbjct: 361 SA-GFKPD----SC--SITSALQAVIELGYF-----------NLGKEIHGYIMRSKLEYD 402

Query: 363 KFVCDHLFEIEPEN------------TGNYIIMA-----NLYSQAGRWDEADRVREQMKE 405
            +VC  L ++  +N            T N  I A     + Y+  G +D A+++  QMKE
Sbjct: 403 VYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKE 462

Query: 406 SGL 408
            G+
Sbjct: 463 EGI 465



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 19/185 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++ +  WN M+ GY+  G  EE   LF  M  + + RPD +T  ++L  C  S  ++ 
Sbjct: 600 IKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGI-RPDAITFTALLSGCKNSGLVMD 658

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIISGY 118
           G +  + +   + I   +   + ++ +  K G LD A   +  M  K + S + A+++  
Sbjct: 659 GWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAAC 718

Query: 119 MVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQN-----NRHEAVLDLVREMQASG 169
            +H  ++     A +LF+      L  +N+    L+ N      R   V  L   M A G
Sbjct: 719 RLHKDIKIAEIAARNLFR------LEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMG 772

Query: 170 VR-PN 173
           V+ PN
Sbjct: 773 VKIPN 777



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 42/242 (17%)

Query: 178 SSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVAT-AIIDTYAKTGFLHGAQRVF 232
           S  FS F H       L   +E+H   +K     N+     +++  Y + G    A +VF
Sbjct: 28  SPKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVF 87

Query: 233 DRFKGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
                R+ ++W + +  +A+  GD+ + + +F E+ + G++ D    T VL  C     +
Sbjct: 88  FVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMEL 147

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
               ++ +A   + G Q  V     ++ +  +   I  A +   + P++           
Sbjct: 148 WLGMEV-HACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQE---------- 196

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
                          D L+        N I+MANL S+  RW++A  +  +M+ +     
Sbjct: 197 ---------------DFLW--------NTIVMANLRSE--RWEDALELSRRMQSASAKAT 231

Query: 412 PG 413
            G
Sbjct: 232 DG 233


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/496 (34%), Positives = 271/496 (54%), Gaps = 38/496 (7%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++ WN +I  Y+  G ++    L+  ML+  V RP+  T   VL+AC     I  G+E+H
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGV-RPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           +      ++ D+++C AL+  YAKCG L  A+ L   MS +D V+++A+I+G  ++G  +
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 126 KAMDLFQVMKRPGLS--------------------------------TWNAVISGLVQNN 153
            A+ L   M+  G+                                 +W+A+I G V ++
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 252

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
             +  LD+ R MQ SG+ P+  T+  +    SH + L+ G   HGY +   +  +  +  
Sbjct: 253 CMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 312

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           A+ID Y+K G +  A+ VF+R     ++ W A+I  Y  HG   +A+ LF+++L  G++P
Sbjct: 313 ALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 372

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D +TF  +LS+C+HSGLV +    F+AMS  + I P +EH  CMV +L RA  I EA  F
Sbjct: 373 DDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHF 432

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           +  MP +P  ++W ALL    I  ++ELG+ V   +  + PE+TGN+++++N+YS AGRW
Sbjct: 433 IRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRW 492

Query: 394 DEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           D+A  +R   K+ GL KIPG SWIE +G + +FV  D S  +  QI   LE LL  M+  
Sbjct: 493 DDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRL 552

Query: 454 GY-----VLLDEVEEE 464
           GY      +  +VEEE
Sbjct: 553 GYQAECSFVFQDVEEE 568



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 148/369 (40%), Gaps = 57/369 (15%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           + +L+AC QS  +    ++H   +++    D  + + L  +Y  C  +  AR L DE+ +
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                                          P +  WN +I     N   +  +DL   M
Sbjct: 72  -------------------------------PSVILWNQIIRAYAWNGPFDGAIDLYHSM 100

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              GVRPN  T   +    S    ++ G EIH +A     + +++V TA++D YAK G L
Sbjct: 101 LHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGIL 160

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             AQR+F     R ++ W A+I+  + +G    AV L  +M   GI P+  T   VL  C
Sbjct: 161 VEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC 220

Query: 286 AHSGLVDKAWDI--------FNAMSGQYGIQPSVEHYACMVGVLSRARRISEA---TEFV 334
                  K +D+        ++AM G Y          CM   L   R +  +    +  
Sbjct: 221 QCLLYARKIFDVMGVRNEVSWSAMIGGYVASD------CMKEALDIFRMMQLSGIDPDLT 274

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
           + + V P+     AL +G    G + +  F  D L         N +I  ++YS+ G+  
Sbjct: 275 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-------CNALI--DMYSKCGKIS 325

Query: 395 EADRVREQM 403
            A  V  +M
Sbjct: 326 FAREVFNRM 334



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 42/261 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW++MI GY      +E   +FR M  S +  PD  T++ VL AC   + +  
Sbjct: 233 MGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGI-DPDLTTMLGVLPACSHLAALQH 291

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H ++I      D  ICNALI MY+KCG + +AR + + M   D VS++A+I GY +
Sbjct: 292 GFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGI 351

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+ LF                                ++ A G++P+ +T   +
Sbjct: 352 HGLGMEALGLFH-------------------------------DLLALGLKPDDITFICL 380

Query: 181 FSLFSHFSNLKGGK-----EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
            S  SH   +  G+         +++  R +  I     ++D   + G +  A       
Sbjct: 381 LSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCI----CMVDILGRAGLIDEAHHFIRNM 436

Query: 236 KGRSLI-IWTAIISAYAAHGD 255
                + IW+A++SA   H +
Sbjct: 437 PFEPDVRIWSALLSACRIHKN 457



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV- 59
           M + DIVSWN+MI GY   G   E   LF ++L +  L+PD +T + +L +C  S  ++ 
Sbjct: 334 MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL-ALGLKPDDITFICLLSSCSHSGLVME 392

Query: 60  ----FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAI 114
               F     +F I    +M+  IC  ++ +  + G +D A   +  M  + +V  +SA+
Sbjct: 393 GRLWFDAMSRDFSIVP--RMEHCIC--MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 115 ISGYMVHGFVE 125
           +S   +H  +E
Sbjct: 449 LSACRIHKNIE 459


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 270/489 (55%), Gaps = 43/489 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWN+MI GY+Q G  +    LF +M    V+  +  TV+S+L  CG+      
Sbjct: 141 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN--TVMSMLAQCGR------ 192

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +E    + +   + D+    A+I   +K G +D AR L D M +++ VS++A+I+GY  
Sbjct: 193 -IEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQ 251

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN---------------------------- 152
           +  +++A+DLF+ M    L +WN +I+GL+QN                            
Sbjct: 252 NLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGC 311

Query: 153 ----NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
                  EA+    R +  +G +PN  T  S+    S+ + L  G+++H    K  Y  +
Sbjct: 312 VQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDS 371

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            +V +A+I+ Y+K G L  A+++FD      R L+ W  II+AYA HG   +A++ F EM
Sbjct: 372 TFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEM 431

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
             +G +PD VT+  +LSAC+H+GLV++    F+ +     I    +HYAC+V +  RA R
Sbjct: 432 RKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGR 491

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + EA  F+ ++  KPSA+VWGALL G ++  +V++GK     L E+EPEN G Y++++N+
Sbjct: 492 LKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNI 551

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y+  G+W EA RVR +MK+ GL K PG SWIE    +  FV  D S  +S+ IY +L  L
Sbjct: 552 YASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDL 611

Query: 447 LGLMREEGY 455
              M++ GY
Sbjct: 612 HSKMKKAGY 620



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 181/411 (44%), Gaps = 32/411 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++   N MI   S+ G   E + LF EM    V+     TV+S    CG         E 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVI--TWTTVISGYIKCGMIE------EA 102

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
                    K ++    A++G Y +   +  A  L +EM +K+ VS++ +I GY  +G +
Sbjct: 103 RRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRI 162

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + AM LF+ M    + +WN V+S L Q  R E    L   M    V    ++ +++ +  
Sbjct: 163 DSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV----ISWTAMIAGL 218

Query: 185 SHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           S     K G+      + +R  +RN+    A+I  YA+   L  A  +F+R   R L  W
Sbjct: 219 S-----KNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSW 273

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +I+    +GD  +A  LFNEM    +    +++T +++ C   G  ++A  IF+ M  
Sbjct: 274 NTMITGLIQNGDLRRARKLFNEMPKKNV----ISWTTMITGCVQEGESEEALKIFSRMLS 329

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWGALLYGASISGDVE 360
             G +P+   +  ++G  S    + E     + +SK   + S  V  AL+   S  G  E
Sbjct: 330 TNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG--E 387

Query: 361 LG---KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           LG   K   D +       + N II A  Y+  G   EA    ++M++SG 
Sbjct: 388 LGTARKMFDDGMTSQRDLVSWNGIIAA--YAHHGYGKEAINFFKEMRKSGF 436



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 45/235 (19%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG----------- 254
           D N+     +I   +K G +  A+R+FD  +   +I WT +IS Y   G           
Sbjct: 49  DGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDR 108

Query: 255 -DASKAV--------------------SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            DA K V                     LFNEM N  +    V++  ++   A +G +D 
Sbjct: 109 VDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV----VSWNTMIDGYAQNGRIDS 164

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           A  +F  M      + +V  +  ++ +L++  RI EA     +MP +     W A++ G 
Sbjct: 165 AMYLFEKMP-----ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVIS-WTAMIAGL 218

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           S +G ++  + + D + E    N  ++  M   Y+Q  R DEA  + E+M E  L
Sbjct: 219 SKNGRIDEARLLFDRMPE---RNVVSWNAMITGYAQNLRLDEALDLFERMPERDL 270


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 257/456 (56%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ + +VSWNSMI GY Q G       +F++M++  V     VTV+  L AC    D+  
Sbjct: 337 MTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQV-EMTNVTVMGALHACADLGDVEQ 395

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  + +  +  D+ + N+LI MY+KC  +D A                        
Sbjct: 396 GRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIA------------------------ 431

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   ++F+ ++   L +WNA+I G  QN R    +D   +MQ   ++P++ T+ S+
Sbjct: 432 -------AEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSV 484

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S L   K IHG  ++   D+N++VATA++D YAK G +H A+++FD    R +
Sbjct: 485 IPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHV 544

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I  Y  HG    A+ LF +M    I+P+ VTF  VLSAC+HSGLV++ +  F +
Sbjct: 545 TTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGS 604

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P+++HY  MV +L RA R++EA +F+ KMP++P+  V+GA+L    I  +VE
Sbjct: 605 MKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVE 664

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + +F+++P++ G ++++AN+Y+ A  WD+  RVR  M++ G+ K PG S +E  
Sbjct: 665 LGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQ 724

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F +  TS  ++++IY  LE L   ++  GY+
Sbjct: 725 NEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYM 760



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 181/370 (48%), Gaps = 36/370 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +++M+ GY++    ++  + F  M    V RP       +L+ CG ++D+  G E+H  +
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGV-RPVVYNFTYLLKVCGDNADLRKGKEIHCQL 201

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I +    +++    ++ MYAKC  ++ A  + D M ++D                     
Sbjct: 202 IVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERD--------------------- 240

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                     L  WN +ISG  QN   +  L+LV  MQ  G RP+++TI SI    +   
Sbjct: 241 ----------LVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVG 290

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G+ IHGY+++  ++  + V+TA++D Y+K G +  A+ +FDR  G++++ W ++I 
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            Y  +GD   A+ +F +M++  ++   VT    L ACA  G V++   +   +  Q  + 
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLD-QLELG 409

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV-ELGKFVCD 367
             V     ++ + S+ +R+  A E    +  K +   W A++ G + +G + E   + C 
Sbjct: 410 SDVSVMNSLISMYSKCKRVDIAAEIFENLQHK-TLVSWNAMILGYAQNGRINEAIDYFCK 468

Query: 368 -HLFEIEPEN 376
             L  I+P++
Sbjct: 469 MQLQNIKPDS 478



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + ++S +   G + +A  +FQ ++      ++ ++ G  +N+  +  +     M+  GVR
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P     + +  +    ++L+ GKEIH   + N +  N++  T +++ YAK   +  A ++
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR   R L+ W  IIS YA +G    A+ L   M   G +PD +T  ++L A A  G +
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
                I +  S + G +  V     +V + S+   +  A     +M  K +   W +++ 
Sbjct: 293 RIGRSI-HGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK-TVVSWNSMID 350

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
           G   +GD      +   + + + E T N  +M  L++ A   D
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMT-NVTVMGALHACADLGD 392



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 194 KEIHGYA---VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
           KE+H +    +KN         T ++  + K G LH A RVF   + +   ++  ++  Y
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
           A +     AVS F  M  +G++P    FT +L  C  +  + K  +I   +    G   +
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVN-GFASN 209

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
           V     +V + ++ R + EA +   +MP +     W  ++ G + +G    GK   + + 
Sbjct: 210 VFAMTGVVNMYAKCRLVEEAYKMFDRMPER-DLVCWNTIISGYAQNG---FGKTALELVL 265

Query: 371 EIEPE 375
            ++ E
Sbjct: 266 RMQEE 270


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 256/451 (56%), Gaps = 2/451 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +V++N+MI+GY   G Y+E   + R M++S +   D  T  SV++AC  +  +  G +VH
Sbjct: 251 LVAYNAMISGYVNCGLYQEALEMVRRMVSSGI-ELDEFTYPSVIRACANARLLQLGKQVH 309

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            +V+           N+L+ +Y KCG  + ARA+ ++M  KD VS++A++SGY+  G + 
Sbjct: 310 AYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A  +F+ MK   + +W  +ISGL +N   E  L L   M+  G  P     S      +
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                  G++ H   VK  +D ++    A+I  YAK G +  AQ+VF        + W A
Sbjct: 429 VLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNA 488

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I+A   HG   +AV ++ EML  GI+PD +TF  VL+AC+H+GLVD+    FN+M   Y
Sbjct: 489 LIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVY 548

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            I P  +HYA ++ +L R+ + SEA   +  +P KP+A++W ALL G  + G++ELG   
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
            D LF + PE+ G Y++++N+Y+  G+W+E  RVR+ M++ G+ K    SWIE    + +
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           F+  DTS  ++E +Y  L+ L   MR  GYV
Sbjct: 669 FLVDDTSHPEAEAVYKYLQDLGKEMRRLGYV 699



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 162/315 (51%), Gaps = 13/315 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIV 59
           +S RD V +N+MI G+S          LF +M +    +PD  T  SVL        D  
Sbjct: 108 VSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG-FKPDDFTYASVLAGLALVVDDEK 166

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGS----LDYARALLDEMSDKDEVSYSAII 115
             ++ H   ++S       + NAL+ +Y++C S    L  AR + D++ +KDE S++ ++
Sbjct: 167 QCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMM 226

Query: 116 SGYMVHGFVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           +GY+ +G  +   +L + M +   L  +NA+ISG V    ++  L++VR M +SG+  + 
Sbjct: 227 TGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDE 286

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T  S+    ++   L+ GK++H Y ++ R D + +   +++  Y K G  + A+ +F++
Sbjct: 287 FTYPSVIRACANARLLQLGKQVHAYVLR-REDFSFHFDNSLVTLYYKCGKFNEARAIFEK 345

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              + L+ W A++S Y + G   +A  +F EM    I    +++  ++S  A +G  ++ 
Sbjct: 346 MPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEG 401

Query: 295 WDIFNAMSGQYGIQP 309
             +F+ M  + G +P
Sbjct: 402 LKLFSCMKRE-GFEP 415



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 45/384 (11%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  +I    +    I N LI +Y K   LDYAR L DE+S+ D+++ + ++SGY   G 
Sbjct: 36  VHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 124 VEKAMDLFQVMKRPGLST--WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           +  A  +F+        T  +NA+I+G   NN   + ++L  +M+  G +P+  T +S+ 
Sbjct: 96  IALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL 155

Query: 182 S-LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG----FLHGAQRVFDRFK 236
           + L     + K   + H  A+K+       V+ A++  Y++       LH A++VFD   
Sbjct: 156 AGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIP 215

Query: 237 GR--------------------------------SLIIWTAIISAYAAHGDASKAVSLFN 264
            +                                 L+ + A+IS Y   G   +A+ +  
Sbjct: 216 EKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVR 275

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
            M+++GI+ D  T+ +V+ ACA++ L+     +   +  +     S      +V +  + 
Sbjct: 276 RMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF--SFHFDNSLVTLYYKC 333

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384
            + +EA     KMP K     W ALL G   SG +   K +     E++ +N  +++IM 
Sbjct: 334 GKFNEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLI---FKEMKEKNILSWMIMI 389

Query: 385 NLYSQAGRWDEADRVREQMKESGL 408
           +  ++ G  +E  ++   MK  G 
Sbjct: 390 SGLAENGFGEEGLKLFSCMKREGF 413



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 63/287 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR--------------PDGVTVV 46
           M  +D+VSWN++++GY   G   E K +F+EM    +L                +G+ + 
Sbjct: 346 MPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLF 405

Query: 47  SVLQACG-QSSDIVF---------------GMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           S ++  G +  D  F               G + H  +++      L   NALI MYAKC
Sbjct: 406 SCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKC 465

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G ++ A+ +   M   D VS++A+I+    HG   +A+D+++                  
Sbjct: 466 GVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYE------------------ 507

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL-KGGKEIHGYAVKNRYDRNI 209
                        EM   G+RP+ +T  ++ +  SH   + +G K  +      R     
Sbjct: 508 -------------EMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGA 554

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-IWTAIISAYAAHGD 255
                +ID   ++G    A+ + +    +    IW A++S    HG+
Sbjct: 555 DHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGN 601



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 44/260 (16%)

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           ++L+  + +HG  +   +  + ++   +ID Y K+  L  A+++FD       I  T ++
Sbjct: 28  TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMV 87

Query: 248 SAYAAHGDAS---------------------------------KAVSLFNEMLNNGIQPD 274
           S Y A GD +                                  A++LF +M + G +PD
Sbjct: 88  SGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR----ISEA 330
             T+ +VL+  A     +K    F+A + + G          +V V SR       +  A
Sbjct: 148 DFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSA 207

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYS 388
            +    +P K   + W  ++ G   +G  +LGK     L +   EN     Y  M + Y 
Sbjct: 208 RKVFDDIPEK-DERSWTTMMTGYVKNGCFDLGK----ELLKGMDENMKLVAYNAMISGYV 262

Query: 389 QAGRWDEADRVREQMKESGL 408
             G + EA  +  +M  SG+
Sbjct: 263 NCGLYQEALEMVRRMVSSGI 282


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 276/478 (57%), Gaps = 14/478 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSD 57
           +S  +I ++N+++  +SQ   +    + F   L   N+P   PD  T  SVL+AC   + 
Sbjct: 85  LSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAP--NPDEYTFTSVLKACAGLAQ 142

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           ++ G +VH FV +   + +L++ N+L+ +Y K G    A+ L DEM  +D VS++ +ISG
Sbjct: 143 VLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISG 202

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVT 176
           Y   G V+KA  +F  M    L +W+ +ISG  +N ++   ++L R+MQ   G+ PN VT
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVT 262

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S+ S  +H   L  GK IH +  +N+ +  +++  A+ D YAK G +  A+ VF    
Sbjct: 263 LVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMH 322

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R +I W+ II   A +G A++A + F EM+ +G++P+ ++F  +L+AC H+GLVDK  +
Sbjct: 323 ERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLE 382

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F+ M   YGI P +EHY C+V +LSRA R+ +A   ++ MP++P+  VWGALL G  I 
Sbjct: 383 YFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIY 442

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            D E G+ V   + E++  ++G+ + +AN+Y+  GR D+A   R +M+++   K PG SW
Sbjct: 443 KDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSW 502

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
           IE +  +  F   D+S  +S +IY ++  L   M+  GY          +DE E+E A
Sbjct: 503 IEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDA 560


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/452 (36%), Positives = 259/452 (57%), Gaps = 32/452 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DIV   +MI+GY   G       +FR +L    +R + VT+ SVL AC   + +  G E+
Sbjct: 315 DIVVCTAMISGYVLNGMNNNALEIFRWLLQER-MRANSVTLASVLPACAGLAALTLGKEL 373

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  ++++      ++ +A++ MYAKCG LD A      +SDKD V               
Sbjct: 374 HGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAV--------------- 418

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++I+   QN + E  +DL R+M  +G + + V+IS+  S  
Sbjct: 419 ----------------CWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSAC 462

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           ++   L  GKEIH + ++  +  +++  +A+ID Y+K G L  A RVFD  + ++ + W 
Sbjct: 463 ANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWN 522

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II+AY  HG    +++LF+ ML +GIQPD VTF A++SAC H+G VD+    F  M+ +
Sbjct: 523 SIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEE 582

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            GI   +EHYACMV +  RA R++EA   ++ MP  P A VWG LL    + G+VEL + 
Sbjct: 583 LGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEV 642

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              +LF+++P+N+G Y++++N+++ AG+W+   ++R  MKE G+ K+PG SWI+ +    
Sbjct: 643 ASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTH 702

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            FVA D S  +S QIYL+L+ L   +R+EGYV
Sbjct: 703 MFVAADRSHPQSSQIYLLLKNLFLELRKEGYV 734



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 194/442 (43%), Gaps = 87/442 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V WN M+ GY + G ++    +F EM  +    P+ VT   VL  C     I F
Sbjct: 208 MPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET-NPNSVTFACVLSVCASEIMINF 266

Query: 61  GMEVHNFVIESHIKMDLWICN--ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G ++H  V+ S ++MD  + N  ALI +Y KC  ++ AR + D+ +  D V  +A+ISGY
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGY 326

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                     V++G+  N      L++ R +    +R N+VT++
Sbjct: 327 --------------------------VLNGMNNN-----ALEIFRWLLQERMRANSVTLA 355

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +  + L  GKE+HG+ +KN +  + YV +AI+D YAK G L  A + F     +
Sbjct: 356 SVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK 415

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----------- 287
             + W ++I++ + +G   +A+ LF +M   G + D V+ +A LSACA+           
Sbjct: 416 DAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIH 475

Query: 288 ------------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
                                    G +D A  +F+ M  +  +      +  ++     
Sbjct: 476 AFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVS-----WNSIIAAYGN 530

Query: 324 ARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-- 378
             R+ ++      M    ++P    + A++     +G V+ G     H F    E  G  
Sbjct: 531 HGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGI----HYFRCMTEELGIM 586

Query: 379 ----NYIIMANLYSQAGRWDEA 396
               +Y  M +L+ +AGR +EA
Sbjct: 587 ARMEHYACMVDLFGRAGRLNEA 608



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 34/280 (12%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN MI G++  G ++     + +ML    L PD  T   V++ACG  + +  G  VH+ +
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVALGRVVHDKI 173

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
                ++D+++ ++LI  Y++ G +  AR L D M  KD V ++ +++GY+ +G  + A 
Sbjct: 174 QFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNAT 233

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F  M+R                               +   PN+VT + + S+ +   
Sbjct: 234 GVFMEMRR-------------------------------TETNPNSVTFACVLSVCASEI 262

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVAT--AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            +  G ++HG  V +  + +  VA   A+ID Y K   +  A+++FD+     +++ TA+
Sbjct: 263 MINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAM 322

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           IS Y  +G  + A+ +F  +L   ++ + VT  +VL ACA
Sbjct: 323 ISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 362



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 34/267 (12%)

Query: 26  KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85
           K L   + N   L P    +VS+LQ C   S +  G + H  ++ + I  +  +   L+G
Sbjct: 33  KPLQFSIHNDDSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLG 89

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MY  CG      A LD                         A ++F  ++      WN +
Sbjct: 90  MYVLCG------AFLD-------------------------AKNIFYQLRLWCSEPWNWM 118

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I G     + +  L    +M   G  P+  T   +       +++  G+ +H       +
Sbjct: 119 IRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGF 178

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           + +++V +++I  Y++ G +H A+ +FDR   +  ++W  +++ Y  +GD   A  +F E
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVD 292
           M      P+ VTF  VLS CA   +++
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMIN 265



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ VSWNS+IA Y   G  ++   LF  ML   + +PD VT ++++ ACG +  +  
Sbjct: 513 MEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGI-QPDHVTFLAIISACGHAGQVDE 571

Query: 61  GMEVHNFVIES---HIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+     + E      +M+ + C  ++ ++ + G L+ A  +++ M    D   +  ++ 
Sbjct: 572 GIHYFRCMTEELGIMARMEHYAC--MVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLG 629

Query: 117 GYMVHGFVEKA----MDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
              +HG VE A     +LF +   P  S +  ++S +  N  + E+VL +   M+  GV+
Sbjct: 630 ACRLHGNVELAEVASRNLFDL--DPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQ 687


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 169/465 (36%), Positives = 271/465 (58%), Gaps = 6/465 (1%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS--DIVFGME 63
           IVSW S IA + + G   E  A F  M  + V RP+ +T +++L AC       + FG  
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGV-RPNHITFLTLLSACTDFPLEGLRFGGS 112

Query: 64  VHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +V +  +  + + +  AL+ MY+KCG LD A  + DEM  ++ VS++ +I G M +G
Sbjct: 113 IHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNG 172

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V +A+ LF  M      +W ++I G V+    E  L+  REMQ +GV P+ VTI S+ +
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++   L  G  I+ + +K  +  NI ++ ++ID Y++ G +  A++VF++   RSL+ 
Sbjct: 233 ACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVS 292

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++I  +A +G A +A+  FN M   G +PD V+FT  L+AC+HSGLVD+    F+ M 
Sbjct: 293 WNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMK 352

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
               I P +EHY C+V + SRA R+ +A   ++ MP+KP+  V G+LL      GDV L 
Sbjct: 353 RTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLA 412

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + +  +L E++P +  NY++++N+Y+  GRWD A +VR++MK  G+ K PG S IE  G 
Sbjct: 413 ERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGS 472

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
           +  FVA D +  +++ IY +L+ L   +R  GYV   E+E   +Y
Sbjct: 473 IHEFVAGDKTHVETQNIYAMLDHLFLELRICGYV--PEIEVGKSY 515



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 128/265 (48%), Gaps = 34/265 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD +SW SMI G+ + G +E+    FREM  + V  PD VT++SVL AC     +  
Sbjct: 184 MSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGV-EPDYVTIISVLAACANLGALGL 242

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ ++ FV++   K ++ I N+LI MY++CG +  AR + ++M  +  VS++++I G+ +
Sbjct: 243 GLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFAL 302

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A++ F +M++                                G RP+ V+ +  
Sbjct: 303 NGHAEEALEFFNLMRK-------------------------------EGFRPDGVSFTGA 331

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            +  SH   +  G +      + R     I     ++D Y++ G L  A  V      + 
Sbjct: 332 LTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKP 391

Query: 239 SLIIWTAIISAYAAHGDASKAVSLF 263
           + ++  ++++A   HGD   A  L 
Sbjct: 392 NEVVLGSLLAACRTHGDVGLAERLM 416


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 264/471 (56%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW +MI+GYSQ GF  E   LF +ML S    P+  T  +VL +C   S    
Sbjct: 71  MRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDT-EPNEFTFATVLSSCTGFSGFEL 129

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ + + + +  +++ ++L+ MYAK G +  AR + + + ++D VS +AI      
Sbjct: 130 GRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI------ 183

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                    ISG  Q    E  L+L   +Q  G+  N VT +S+
Sbjct: 184 -------------------------ISGYAQLGLDEEALELFCRLQREGMSSNYVTYASL 218

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK++H + ++      + +  ++ID Y+K G L+ A+++F+    R++
Sbjct: 219 LTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTV 278

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W A++  Y+ HG   + V LF  M   N ++PD VTF AVLS C+H GL DK  ++F+
Sbjct: 279 ISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFD 338

Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            M +G   I+  +EHY C++ +L RA R+ EA E + KMP +P+A +WG+LL    +  +
Sbjct: 339 EMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSN 398

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
             +G+FV   L EIEPEN GNY+I++NLY+ AGRW++   VRE M E  + K PGRSWIE
Sbjct: 399 TNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIE 458

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F A D S  + E+++L +  LL   +E GYV     +L +V+EE
Sbjct: 459 LDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEE 509



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 157/329 (47%), Gaps = 43/329 (13%)

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           +  P ++ DG  ++  L  C     +  G  VH  +I++     +++   LI +Y KC  
Sbjct: 3   IQGPEIKFDGYNML--LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           L  AR + DEM +++ VS++A+ISGY   GF  +A+ LF  M R                
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLR---------------- 104

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
                          S   PN  T +++ S  + FS  + G++IH +  K  Y+ +I+V 
Sbjct: 105 ---------------SDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVG 149

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           ++++D YAK G +H A+ VF+    R ++  TAIIS YA  G   +A+ LF  +   G+ 
Sbjct: 150 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS 209

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----MVGVLSRARRIS 328
            + VT+ ++L+A +    +D    + + +     ++  +  Y      ++ + S+   ++
Sbjct: 210 SNYVTYASLLTALSGLAALDHGKQVHSHV-----LRCELPFYVVLQNSLIDMYSKCGNLN 264

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISG 357
            A +  + MPV+ +   W A+L G S  G
Sbjct: 265 YARKIFNNMPVR-TVISWNAMLVGYSKHG 292


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 255/470 (54%), Gaps = 37/470 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +VSW +MI  ++Q     E   LF  M+ S  ++P+ VT+V+VL AC ++ D+  
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H ++ E      + +   L+ +Y KCG +  AR                       
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLAR----------------------- 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   DLF   +   L +WN +I+G V+++ +E  L L REMQ  G++ + VT++S+
Sbjct: 243 --------DLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASL 294

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   L+ GK +H Y  K R D ++ + TA++D YAK G +  A +VF     + +
Sbjct: 295 LLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDV 354

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I   A  G A  A+  F+EM   G++PD +TF  VL+AC+H+G VD+    FN+
Sbjct: 355 MTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNS 414

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGIQP++EHY  +V +L RA RI+EA E +  MP+ P   V G LL    I G++E
Sbjct: 415 MSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLE 474

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
             +     L EI+P ++G Y++++N+Y  + +W+EA R RE M E G+ K PG S IE  
Sbjct: 475 AAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVH 534

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           G +  FV  D+S  +S +I  +LE ++  ++  GY      VL D  EEE
Sbjct: 535 GVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEE 584



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 185/391 (47%), Gaps = 41/391 (10%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           + NS+I G +    ++E    ++EM+   ++ PD  T  S+ ++C  SS+   G ++H  
Sbjct: 55  TCNSIIRGCTDKNLHQEALLFYQEMMVQGLI-PDRYTFPSLFKSCRNSSE---GKQIHCH 110

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
             +     D +  N L+ MY+ CG L  AR + D+M DK  VS++ +I    VH      
Sbjct: 111 STKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIG---VH------ 161

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                       + W+       Q N  EAV    R M++  V+PN VT+ ++ +  +  
Sbjct: 162 ------------AQWD-------QPN--EAVRLFDRMMKSENVKPNEVTLVNVLTACARA 200

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +L   K IH Y  ++ + R++ + T ++D Y K G +  A+ +FD+ + ++L  W  +I
Sbjct: 201 RDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMI 260

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAMSGQYG 306
           + +    +  +A+ LF EM   GI+ D VT  ++L AC H G ++   W   +A   +  
Sbjct: 261 NGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKW--LHAYIKKQR 318

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKF 364
           I   V     +V + ++   I  A +   +MP K     W AL+ G ++ G  E  L  F
Sbjct: 319 IDVDVALGTALVDMYAKCGSIETAIQVFHEMPEK-DVMTWTALILGLAMCGQAENALQYF 377

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
              H+  ++P+      ++A   S AG  DE
Sbjct: 378 DEMHIKGVKPDAITFVGVLAAC-SHAGFVDE 407



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G ++ A  +F  +  P   T N++I G    N H+  L   +EM   G+ P+  T  S  
Sbjct: 36  GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS-- 93

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            LF    N   GK+IH ++ K  +  + Y    +++ Y+  G L  A++VFD+ + ++++
Sbjct: 94  -LFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVV 152

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHS 288
            W  +I  +A     ++AV LF+ M+ +  ++P+ VT   VL+ACA +
Sbjct: 153 SWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARA 200


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 267/470 (56%), Gaps = 9/470 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  +N+MI G+S     ++    + +     +L PD +T   ++++C +   I  G + 
Sbjct: 83  NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLL-PDNLTFPFLVKSCTKLHCISMGSQA 141

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +I+   + D+++ N+L+ MYA  G  + A  +   M   D VS++++I G+   G V
Sbjct: 142 HGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDV 201

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  LF  M    L TW+ +ISG  QNN  +  ++L + +Q+ GVR N   + S+ S  
Sbjct: 202 ESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSC 261

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +H   L+ G+  H Y VKN    N+ + TA++D YA+ G +  A  VF+    R  + WT
Sbjct: 262 AHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWT 321

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+  A HG + +++  F  M+  G+ P  +TFTAVLSAC+H GLV++ + IF +M   
Sbjct: 322 ALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRD 381

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           + ++P +EHY CMV +L RA ++ EA  FV KMPVKP+A VWGALL    I  + E+G+ 
Sbjct: 382 HRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGER 441

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L ++ P+++G Y++++N+Y+ A  W++   +R+ MK  GL K PG S IE  G + 
Sbjct: 442 VGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVH 501

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
            F   D+S  + ++I  + E +L  +R  GY          +DE E+ESA
Sbjct: 502 KFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESA 551



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 131/258 (50%), Gaps = 34/258 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++V+W++MI+GY+Q   +++   LF+ +L S  +R +   +VSV+ +C     +  
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFK-VLQSQGVRANETVMVSVISSCAHLGALEL 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H++V+++ + ++L +  AL+ MYA+CGS+D A  + +++ ++D +S++A+I+G  +
Sbjct: 270 GERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAM 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+ E+++  F  M   GL+                               P  +T +++
Sbjct: 330 HGYSERSLKYFATMVEAGLT-------------------------------PRDITFTAV 358

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            S  SH   ++ G +I       +R +  +     ++D   + G L  A+R   +   + 
Sbjct: 359 LSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKP 418

Query: 239 SLIIWTAIISAYAAHGDA 256
           +  +W A++ A   H +A
Sbjct: 419 NAPVWGALLGACRIHKNA 436



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 101/484 (20%), Positives = 192/484 (39%), Gaps = 122/484 (25%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE 108
           L+ C   SD+     +H ++I +HI  D++  + LI               +D  S    
Sbjct: 24  LETC---SDLTHLKIIHAYMIRTHIICDVFAASRLIAF------------CVDPSSGTSL 68

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           + Y++ I               F  ++ P L  +NA+I G   +   +       + Q  
Sbjct: 69  IDYASRI---------------FSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQ 113

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA-------- 220
           G+ P+ +T   +    +    +  G + HG+ +K+ +++++YV  +++  YA        
Sbjct: 114 GLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAA 173

Query: 221 -----------------------KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
                                  K G +  A+++FD+   ++L+ W+ +IS YA +    
Sbjct: 174 TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFD 233

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG---LVDKAWD--IFNAMSGQYGIQPSVE 312
           KAV LF  + + G++ +     +V+S+CAH G   L ++A D  + N M+    +  +  
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTA-- 291

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKF------ 364
               +V + +R   I +A      +P + +   W AL+ G ++ G  E  L  F      
Sbjct: 292 ----LVDMYARCGSIDKAVWVFEDLPERDTLS-WTALIAGLAMHGYSERSLKYFATMVEA 346

Query: 365 --------------VCDH---------LFE-------IEPENTGNYIIMANLYSQAGRWD 394
                          C H         +FE       +EP    +Y  M +L  +AG+ +
Sbjct: 347 GLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPR-LEHYGCMVDLLGRAGKLE 405

Query: 395 EADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           EA+R         + K+P +      G L        + +  E++  IL +LL   +  G
Sbjct: 406 EAERF--------VLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLP--QHSG 455

Query: 455 YVLL 458
           Y +L
Sbjct: 456 YYVL 459


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 256/472 (54%), Gaps = 40/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNSMI  Y Q    +E   +F++ML+  V +P  V+V+  L AC    D+  
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGV-KPTDVSVMGALHACADLGDLER 355

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   +E  +  ++ + N+LI MY KC  +D A ++  ++  +  VS          
Sbjct: 356 GRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVS---------- 405

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN R    L+   +MQA  V+P+  T  S+
Sbjct: 406 ---------------------WNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSV 444

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S     K IHG  ++N  D+N++V TA++D YAK G +  A+ +FD    R +
Sbjct: 445 ITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHV 504

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I  Y  HG    A+ LF EM    I+P+ VTF +V+SAC+HSGLV+     F+ 
Sbjct: 505 TTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHM 564

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I+PS++HY  MV +L RA R++EA +F+ +MPVKP+  V+GA+L    I  +V 
Sbjct: 565 MKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVN 624

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
             + V + LFE+ PE+ G ++++AN+Y  A  W++  +VR  M   GL K PG S +E  
Sbjct: 625 FAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIK 684

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV--------LLDEVEEE 464
             + SF +  T+   S++IY  LE+L+  ++E GYV        L D+V+E+
Sbjct: 685 NEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGLEDDVKEQ 736



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 227/505 (44%), Gaps = 94/505 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+++AGYSQ G       +   M     L+P  +T+VSVL A      I  
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEEN-LKPSFITIVSVLPAVSALRLIRI 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + + +     + I  AL+ MYAKCGSL  AR L D M +++ VS++++I  Y+ 
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +   ++AM +FQ M                        LD        GV+P  V++   
Sbjct: 315 NENPKEAMVIFQKM------------------------LD-------EGVKPTDVSVMGA 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+ G+ IH  +V+   DRN+ V  ++I  Y K   +  A  +F + + R++
Sbjct: 344 LHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTI 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           + W A+I  +A +G   +A++ F++M    ++PD  T+ +V++A A              
Sbjct: 404 VSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGV 463

Query: 288 -------------SGLVDK---------AWDIFNAMSGQYGIQPSVEHYACMV---GVLS 322
                        + LVD          A  IF+ MS ++     V  +  M+   G   
Sbjct: 464 VMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----VTTWNAMIDGYGTHG 518

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL----FEIEPENTG 378
             +   E  E + K  ++P+   + +++   S SG VE G   C H+    + IEP +  
Sbjct: 519 IGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAG-LKCFHMMKENYSIEP-SMD 576

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQ 438
           +Y  M +L  +AGR +EA     QM        P +  +   G +        + + +E+
Sbjct: 577 HYGAMVDLLGRAGRLNEAWDFIMQM--------PVKPAVNVYGAMLGACQIHKNVNFAEK 628

Query: 439 IYLILERLLGLMREEG--YVLLDEV 461
              + ERL  L  E+G  +VLL  +
Sbjct: 629 ---VAERLFELNPEDGGYHVLLANI 650



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 172/357 (48%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K+  V + +M+ G+++    ++    F  M +  V  P       +L+ CG  +++  
Sbjct: 95  IDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEV-EPVVYNFTYLLKVCGDEAELRV 153

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  +++S   +DL+    L  MYAKC  +  AR + D M ++D VS          
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVS---------- 203

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +++G  QN      L++V  M    ++P+ +TI S+
Sbjct: 204 ---------------------WNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSV 242

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    ++ GKEIHGYA++  +D  + +ATA++D YAK G L  A+ +FD    R++
Sbjct: 243 LPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNV 302

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I AY  + +  +A+ +F +ML+ G++P  V+    L ACA  G +++   I + 
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI-HK 361

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +S +  +  +V     ++ +  + + +  A     K+  +     W A++ G + +G
Sbjct: 362 LSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVS-WNAMILGFAQNG 417



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 151/347 (43%), Gaps = 41/347 (11%)

Query: 89  KCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNA 144
           +C SL   R +L  +      ++ +  + ++S +  +G V++A  +F+ + +     +  
Sbjct: 46  RCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYT 105

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           ++ G  + +  +  L     M+   V P     + +  +    + L+ GKEIHG  VK+ 
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
           +  +++  T + + YAK   +H A++VFDR   R L+ W  I++ Y+ +G A  A+ + N
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVN 225

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLV---------------DKAWDIFNAMSGQYG--- 306
            M    ++P  +T  +VL A +   L+               D   +I  A+   Y    
Sbjct: 226 LMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCG 285

Query: 307 ------------IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPS-AKVWGALL 350
                       ++ +V  +  M+    +     EA     KM    VKP+   V GAL 
Sbjct: 286 SLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALH 345

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
             A + GD+E G+F+  H   +E E   N  ++ +L S   +  E D
Sbjct: 346 ACADL-GDLERGRFI--HKLSVELELDRNVSVVNSLISMYCKCKEVD 389



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 81/189 (42%), Gaps = 6/189 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L    S+LK  + I     KN   +     T ++  + + G +  A RVF+    +  ++
Sbjct: 43  LLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVL 102

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           +  ++  +A   D  KA+  F  M ++ ++P    FT +L  C     +    +I + + 
Sbjct: 103 YYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEI-HGLL 161

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG----D 358
            + G    +     +  + ++ R++ EA +   +MP +     W  ++ G S +G     
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVS-WNTIVAGYSQNGMARMA 220

Query: 359 VELGKFVCD 367
           +E+   +C+
Sbjct: 221 LEMVNLMCE 229


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 255/443 (57%), Gaps = 4/443 (0%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSP----VLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +N+MI  Y     Y     ++++ML +P     + PD  T   V+++C        G +V
Sbjct: 80  YNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 139

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V +   K +  + N+L+ MY KC SLD A  + +EM+++D VS++ +ISG++  G +
Sbjct: 140 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQM 199

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A  +F+ M+   + +W A++SG  +   +   L+  R MQ  G+ P+ +++ S+    
Sbjct: 200 RRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDC 259

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L+ GK IH YA K  + RNI V  A+I+ YAK G +   +R+FD+ K R +I W+
Sbjct: 260 AQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWS 319

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I   A HG A +A+ LF EM    I+P  +TF  +L+ACAH+GL+++    F +M   
Sbjct: 320 TMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRD 379

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I+P VEHY C+V +L  + R+ +A E V KMP KP + +WG+LL      G++++   
Sbjct: 380 YNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVI 439

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
             +HL E+EP +TGNY++++NLY+  G+WD   R+R+ M+   + K PG S IE    +Q
Sbjct: 440 AMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQ 499

Query: 425 SFVAKDTSGDKSEQIYLILERLL 447
            F + D S   S+ I  +L+ L+
Sbjct: 500 EFASGDDSKPFSKAICRVLKLLV 522



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 61/298 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M++RD VSWN++I+G+ + G     +A+F EM +  +                       
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237

Query: 38  -------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                  + PD +++VSVL  C Q   +  G  +H +  ++    ++ +CNALI MYAKC
Sbjct: 238 RRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKC 297

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+D  R L D+M ++D +S+S +I G   HG   +A++LFQ M++  +        GL+
Sbjct: 298 GSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLL 357

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
               H  +L+        G+R         F       N++ G E +G            
Sbjct: 358 TACAHAGLLN-------EGLR--------YFESMKRDYNIEPGVEHYG------------ 390

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFNEML 267
               +++    +G L  A  +  +   +    IW +++S+  +HG+   AV     +L
Sbjct: 391 ---CLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLL 445



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 71/363 (19%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           V +L+ C    +IV   ++H  +++  +    ++   ++ +    G  +YA  L   ++D
Sbjct: 18  VPILKDC---PNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVAD 74

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
            +   Y+A+I  Y  +     A+ +++ M                  N H          
Sbjct: 75  PNAFLYNAMIRAYKHNKVYVLAITVYKQM----------------LGNPH---------- 108

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             + + P+  T   +    +       GK++HG+  K     N  V  ++++ Y K   L
Sbjct: 109 GENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSL 168

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A RVF+    R  + W  +IS +   G   +A ++F EM +  I     ++TA++S  
Sbjct: 169 DDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGY 224

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A  G    A + F  M    GI+P                      + +S + V P    
Sbjct: 225 ARIGCYADALEFFRRMQ-MVGIEP----------------------DEISLVSVLPDCAQ 261

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQ 402
            GAL          ELGK++  H++  +     N  +   +  +Y++ G  D+  R+ +Q
Sbjct: 262 LGAL----------ELGKWI--HIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309

Query: 403 MKE 405
           MKE
Sbjct: 310 MKE 312


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 268/456 (58%), Gaps = 6/456 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D++SWN+++  +++ G       L   ML   + RPD +T+++++Q     S +  
Sbjct: 350 ISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGI-RPDSITILTIIQYYAAVSRVKK 408

Query: 61  GMEVHNFVIESHI---KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
             E H++ I   +        + N ++  YAKCG++ YA  +   +S+K + V+ +++IS
Sbjct: 409 VKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMIS 468

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+     + A  +F  M    L+TWN ++    +N+  +  L L  E+Q  G++P+ VT
Sbjct: 469 GYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVT 528

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I SI    +H +++   ++ HGY ++  ++ ++ +  A ID Y+K G + GA ++F    
Sbjct: 529 IMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKLFLSSP 587

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + L+++TA++  +A HG   +A+ +F+ ML  G++PD V  TAVL AC+H+GLVD+ W 
Sbjct: 588 QKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWK 647

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IFN++   +G QP++E YAC+V +L+R  RI +A  FV++MP++ +A +WG LL      
Sbjct: 648 IFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTH 707

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VELG+ V DHLF+IE +N GNY++M+NLY+   RWD    +R  M+   L K  G SW
Sbjct: 708 HEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSW 767

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           IE       F+A D+S  +   IY  L  L  LM+E
Sbjct: 768 IEVGRRKNVFIAGDSSHPQRSIIYRTLSTLDQLMKE 803



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 202/483 (41%), Gaps = 101/483 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++IAGY+  G + +   LF E ++   ++PD VT+VSVL AC    ++  
Sbjct: 247 MKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQV 306

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              +H ++I    ++ D  + NAL+  YAKC   +Y +A                     
Sbjct: 307 AKGIHGYIIRHPGLREDTSVGNALLSFYAKC---NYTQA--------------------- 342

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                  A+  F ++ R  L +WNA++    ++     +++L+  M   G+RP+++TI +
Sbjct: 343 -------ALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILT 395

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK-------------------------NRY--------- 205
           I   ++  S +K  KE H Y+++                          +Y         
Sbjct: 396 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLS 455

Query: 206 -DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
             RN+    ++I  Y  +     A  +F+      L  W  ++  YA +    +A+SLF+
Sbjct: 456 EKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFH 515

Query: 265 EMLNNGIQPDPVTFTAVLSACAH----------SGLVDKAW-----------DIFNAMSG 303
           E+   G++PD VT  ++L ACAH           G V +A            D+++    
Sbjct: 516 ELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGS 575

Query: 304 QYGI--------QPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
            +G         Q  +  +  MVG  +      EA    S M    VKP   +  A+L+ 
Sbjct: 576 VFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFA 635

Query: 353 ASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
            S +G V+ G  + + + ++         Y  + +L ++ GR  +A     +M     A 
Sbjct: 636 CSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANAN 695

Query: 411 IPG 413
           I G
Sbjct: 696 IWG 698



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 36/295 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSDIVF 60
           +D+VSWN++IAG+S+  F EE   LF  ML  P+ +P+  T+ S+L  C    +++   +
Sbjct: 145 KDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPI-QPNYATIASILPVCASLEENAGYRY 203

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G EVH  V+    +  D+ + N+L+  Y + G ++ A  L   M  +D VS++AII+GY 
Sbjct: 204 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYA 263

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G   KA++LF                                 +    ++P++VT+ S
Sbjct: 264 SNGEWLKALELFSEF------------------------------ISLETIKPDSVTLVS 293

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +    +H  NL+  K IHGY +++   R +  V  A++  YAK  +   A + F     +
Sbjct: 294 VLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRK 353

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            LI W AI+ A+   G  +  V+L + ML  GI+PD +T   ++   A    V K
Sbjct: 354 DLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKK 408



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 149/294 (50%), Gaps = 39/294 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M +RD V WN +++G +    +E E   LFR M      +P+ VT+  VL  C +  +  
Sbjct: 39  MDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLREDA 98

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGY 118
            G  VH++VI+S ++      NALI MYAKCG +   A A  + +  KD VS++A+I+G+
Sbjct: 99  -GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGF 157

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             + F E+A  LF  M           + G +Q                    PN  TI+
Sbjct: 158 SENKFTEEAFKLFHAM-----------LKGPIQ--------------------PNYATIA 186

Query: 179 SIFSLFSHFSNLKG---GKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           SI  + +      G   GKE+H + ++      ++ V  +++  Y + G +  A+ +F  
Sbjct: 187 SILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRN 246

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAH 287
            K R L+ W AII+ YA++G+  KA+ LF+E ++   I+PD VT  +VL ACAH
Sbjct: 247 MKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 300



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 35/211 (16%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           +C  L+ +YAK G+LDY   L  EM  +D V                             
Sbjct: 15  LCKGLLNLYAKSGALDYCNKLFGEMDQRDPV----------------------------- 45

Query: 139 LSTWNAVISGLVQNNRHEA-VLDLVREMQ-ASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
              WN V+SGL     HEA V+ L R M   +  +PN+VTI+ +  + +       GK +
Sbjct: 46  --IWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSV 102

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           H Y +K+  + +     A+I  YAK G +   A   F+R + + ++ W A+I+ ++ +  
Sbjct: 103 HSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKF 162

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +A  LF+ ML   IQP+  T  ++L  CA
Sbjct: 163 TEEAFKLFHAMLKGPIQPNYATIASILPVCA 193


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 257/468 (54%), Gaps = 40/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFRE--MLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++ V+W++M+  Y    F  E   LF +  ML   V+    VT+ +V++ C   +D+  G
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H + I+S   +DL + N L+ MYAKCG ++ A    +EM  +D VS           
Sbjct: 345 TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS----------- 393

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               + A+ISG VQN   E  L +  EMQ SG+ P   T++S+ 
Sbjct: 394 --------------------FTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVL 433

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +H + L  G   H YA+   +  +  +  A+ID YAK G +  A++VFDR   R ++
Sbjct: 434 PACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIV 493

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  +I AY  HG   +A+ LF+ M + G++PD VTF  ++SAC+HSGLV +    FNAM
Sbjct: 494 SWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAM 553

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  +GI P +EHYACMV +LSRA    E   F+ KMP++P  +VWGALL    +  +VEL
Sbjct: 554 TQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVEL 613

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ V   + ++ PE+TGN+++++N+YS  GRWD+A +VR   KE G  K PG SWIE SG
Sbjct: 614 GEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISG 673

Query: 422 GLQSFVAKD-TSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAYV 468
            + +F+     S  +  QI   L+ LL  M+  GY      + ES+YV
Sbjct: 674 VVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGY------QAESSYV 715



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 205/442 (46%), Gaps = 71/442 (16%)

Query: 1   MSKRDIVSWNSMIAGYS-QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M KRD+V+WNSMI+G+S   G Y+E   L  +M N   + P+  T+V VL A  Q + + 
Sbjct: 180 MHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND--VSPNSSTIVGVLPAVAQVNSLR 237

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGY 118
            G E+H F +      D+ +   ++ +Y KC  +DYAR + D M   K+EV++SA++  Y
Sbjct: 238 HGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAY 297

Query: 119 MVHGFVEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           +V  F+ +A++LF Q++                              ++   +  +AVT+
Sbjct: 298 VVCDFMREALELFCQLLM-----------------------------LKDDVIVLSAVTL 328

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +++  + ++ ++L  G  +H YA+K+ +  ++ V   ++  YAK G ++GA R F+    
Sbjct: 329 ATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDL 388

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVD 292
           R  + +TAIIS Y  +G++ + + +F EM  +GI P+  T  +VL ACA     H G   
Sbjct: 389 RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS 448

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS------------------------ 328
             + I    +    I  ++       G +  AR++                         
Sbjct: 449 HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIG 508

Query: 329 -EATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
            EA      M    +KP    +  L+   S SG V  GK+  + +   F I P    +Y 
Sbjct: 509 LEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPR-MEHYA 567

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            M +L S+AG + E     E+M
Sbjct: 568 CMVDLLSRAGLFKEVHSFIEKM 589



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 198/450 (44%), Gaps = 84/450 (18%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++V WN +I  Y+  G YEE   L+ +ML   +  P+  T   VL+AC    +   G E
Sbjct: 82  KNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI-TPNRFTFPFVLKACSALKEASEGRE 140

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +    ++ ++++  AL+  YAKCG LD A+ + D+M  +D V+++++ISG+ +H  
Sbjct: 141 IHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLH-- 198

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                                          ++ V  L+ +MQ + V PN+ TI  +   
Sbjct: 199 ----------------------------EGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPA 229

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLII 242
            +  ++L+ GKEIHG+ V+  +  ++ V T I+D Y K   +  A+R+FD     ++ + 
Sbjct: 230 VAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVT 289

Query: 243 WTAIISAYAAHGDASKAVSLFNEML---NNGIQPDPVTFTAVLSACAH------------ 287
           W+A++ AY       +A+ LF ++L   ++ I    VT   V+  CA+            
Sbjct: 290 WSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHC 349

Query: 288 -----------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
                                   G+++ A   FN M     ++ +V   A + G +   
Sbjct: 350 YAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMD----LRDAVSFTAIISGYVQNG 405

Query: 325 RRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
               E      +M    + P      ++L   +    +  G   C H + I    T + +
Sbjct: 406 NS-EEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGS--CSHCYAIICGFTADTM 462

Query: 382 I---MANLYSQAGRWDEADRVREQMKESGL 408
           I   + ++Y++ G+ D A +V ++M + G+
Sbjct: 463 ICNALIDMYAKCGKIDTARKVFDRMHKRGI 492



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 128/301 (42%), Gaps = 18/301 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VS+ ++I+GY Q G  EE   +F EM  S +  P+  T+ SVL AC   + + +
Sbjct: 386 MDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGI-NPEKATLASVLPACAHLAGLHY 444

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H + I      D  ICNALI MYAKCG +D AR + D M  +  VS++ +I  Y +
Sbjct: 445 GSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGI 504

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE--------MQASGVRP 172
           HG   +A+ LF  M+  GL   +     L+    H     LV E         Q  G+ P
Sbjct: 505 HGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSG---LVAEGKYWFNAMTQDFGIIP 561

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID---TYAKTGFLHGAQ 229
                + +  L S        KE+H +  K   + ++ V  A++     Y       G  
Sbjct: 562 RMEHYACMVDLLSRAGLF---KEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVS 618

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           +   +    S   +  + + Y+A G    A  +       G +  P      +S   H+ 
Sbjct: 619 KKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTF 678

Query: 290 L 290
           L
Sbjct: 679 L 679



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 38/318 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICN------ALIGMYAKCGSLDYARALL 100
           +L++C QS  +  G  +H  +++  H   +  + N       L+ +Y  C  L  AR + 
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D+M  + +                              +  WN +I     N  +E  +D
Sbjct: 75  DKMPHRPK-----------------------------NVVLWNLLIRAYAWNGPYEEAID 105

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L  +M   G+ PN  T   +    S       G+EIH    + R + N+YV+TA++D YA
Sbjct: 106 LYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYA 165

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K G L  A+ VFD+   R ++ W ++IS ++ H  +   V+     + N + P+  T   
Sbjct: 166 KCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVG 225

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           VL A A    +    +I +    + G    V     ++ V  + + I  A      M + 
Sbjct: 226 VLPAVAQVNSLRHGKEI-HGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIV 284

Query: 341 PSAKVWGALLYGASISGD 358
            +   W A++ GA +  D
Sbjct: 285 KNEVTWSAMV-GAYVVCD 301


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 268/456 (58%), Gaps = 6/456 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D++SWN+++  +++ G       L   ML   + RPD +T+++++Q     S +  
Sbjct: 411 ISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGI-RPDSITILTIIQYYAAVSRVKK 469

Query: 61  GMEVHNFVIESHI---KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
             E H++ I   +        + N ++  YAKCG++ YA  +   +S+K + V+ +++IS
Sbjct: 470 VKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMIS 529

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+     + A  +F  M    L+TWN ++    +N+  +  L L  E+Q  G++P+ VT
Sbjct: 530 GYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVT 589

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I SI    +H +++   ++ HGY ++  ++ ++ +  A ID Y+K G + GA ++F    
Sbjct: 590 IMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKLFLSSP 648

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + L+++TA++  +A HG   +A+ +F+ ML  G++PD V  TAVL AC+H+GLVD+ W 
Sbjct: 649 QKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWK 708

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IFN++   +G QP++E YAC+V +L+R  RI +A  FV++MP++ +A +WG LL      
Sbjct: 709 IFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTH 768

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VELG+ V DHLF+IE +N GNY++M+NLY+   RWD    +R  M+   L K  G SW
Sbjct: 769 HEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSW 828

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           IE       F+A D+S  +   IY  L  L  LM+E
Sbjct: 829 IEVGRRKNVFIAGDSSHPQRSIIYRTLSTLDQLMKE 864



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 202/483 (41%), Gaps = 101/483 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++IAGY+  G + +   LF E ++   ++PD VT+VSVL AC    ++  
Sbjct: 308 MKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQV 367

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              +H ++I    ++ D  + NAL+  YAKC   +Y +A                     
Sbjct: 368 AKGIHGYIIRHPGLREDTSVGNALLSFYAKC---NYTQA--------------------- 403

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                  A+  F ++ R  L +WNA++    ++     +++L+  M   G+RP+++TI +
Sbjct: 404 -------ALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILT 456

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK-------------------------NRY--------- 205
           I   ++  S +K  KE H Y+++                          +Y         
Sbjct: 457 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLS 516

Query: 206 -DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
             RN+    ++I  Y  +     A  +F+      L  W  ++  YA +    +A+SLF+
Sbjct: 517 EKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFH 576

Query: 265 EMLNNGIQPDPVTFTAVLSACAH----------SGLVDKAW-----------DIFNAMSG 303
           E+   G++PD VT  ++L ACAH           G V +A            D+++    
Sbjct: 577 ELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGS 636

Query: 304 QYGI--------QPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
            +G         Q  +  +  MVG  +      EA    S M    VKP   +  A+L+ 
Sbjct: 637 VFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFA 696

Query: 353 ASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
            S +G V+ G  + + + ++         Y  + +L ++ GR  +A     +M     A 
Sbjct: 697 CSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANAN 756

Query: 411 IPG 413
           I G
Sbjct: 757 IWG 759



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 36/295 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSDIVF 60
           +D+VSWN++IAG+S+  F EE   LF  ML  P+ +P+  T+ S+L  C    +++   +
Sbjct: 206 KDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPI-QPNYATIASILPVCASLEENAGYRY 264

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G EVH  V+    +  D+ + N+L+  Y + G ++ A  L   M  +D VS++AII+GY 
Sbjct: 265 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYA 324

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G   KA++LF                                 +    ++P++VT+ S
Sbjct: 325 SNGEWLKALELFSEF------------------------------ISLETIKPDSVTLVS 354

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +    +H  NL+  K IHGY +++   R +  V  A++  YAK  +   A + F     +
Sbjct: 355 VLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRK 414

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            LI W AI+ A+   G  +  V+L + ML  GI+PD +T   ++   A    V K
Sbjct: 415 DLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKK 469



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 149/294 (50%), Gaps = 39/294 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M +RD V WN +++G +    +E E   LFR M      +P+ VT+  VL  C +  +  
Sbjct: 100 MDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLREDA 159

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGY 118
            G  VH++VI+S ++      NALI MYAKCG +   A A  + +  KD VS++A+I+G+
Sbjct: 160 -GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGF 218

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             + F E+A  LF  M           + G +Q                    PN  TI+
Sbjct: 219 SENKFTEEAFKLFHAM-----------LKGPIQ--------------------PNYATIA 247

Query: 179 SIFSLFSHFSNLKG---GKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           SI  + +      G   GKE+H + ++      ++ V  +++  Y + G +  A+ +F  
Sbjct: 248 SILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRN 307

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAH 287
            K R L+ W AII+ YA++G+  KA+ LF+E ++   I+PD VT  +VL ACAH
Sbjct: 308 MKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 361



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 38/270 (14%)

Query: 22  YEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE-SHIKMDLWI 79
           ++E  +LF E +   V  +P+G  + ++L++C   S I FG  +H + ++  H+     +
Sbjct: 18  HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQS-L 76

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           C  L+ +YAK G+LDY   L  EM  +D V                              
Sbjct: 77  CKGLLNLYAKSGALDYCNKLFGEMDQRDPV------------------------------ 106

Query: 140 STWNAVISGLVQNNRHEA-VLDLVREMQ-ASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
             WN V+SGL     HEA V+ L R M   +  +PN+VTI+ +  + +       GK +H
Sbjct: 107 -IWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVH 164

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
            Y +K+  + +     A+I  YAK G +   A   F+R + + ++ W A+I+ ++ +   
Sbjct: 165 SYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFT 224

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            +A  LF+ ML   IQP+  T  ++L  CA
Sbjct: 225 EEAFKLFHAMLKGPIQPNYATIASILPVCA 254



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 154 RHEAVLDLV--REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
           RH+  L L   R   + G +PN   ++++       S ++ G  +HGYA+K  +     +
Sbjct: 17  RHDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSL 76

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA-HGDASKAVSLFNEM-LNN 269
              +++ YAK+G L    ++F     R  +IW  ++S  A      ++ + LF  M + N
Sbjct: 77  CKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVN 136

Query: 270 GIQPDPVTFTAVLSACA 286
             +P+ VT   VL  CA
Sbjct: 137 EAKPNSVTIAIVLPVCA 153


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 248/448 (55%), Gaps = 5/448 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           W ++I G++  G +E+    + +ML   V  P+  T  S+L+ C     I  G  +H+  
Sbjct: 96  WTAIIHGHALRGLHEQALNFYAQMLTQGV-EPNAFTFSSILKLC----PIEPGKALHSQA 150

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     DL++   L+ +YA+ G +  A+ L D M +K  VS +A+++ Y  HG ++ A 
Sbjct: 151 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 210

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M+      WN +I G  QN      L L R M  +  +PN VT+ S+ S      
Sbjct: 211 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 270

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L+ G+ +H Y   N    N++V TA++D Y+K G L  A+ VFD+   + ++ W ++I 
Sbjct: 271 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 330

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA HG + +A+ LF  M   G+ P  +TF  +LSAC HSG V + WDIFN M  +YGI+
Sbjct: 331 GYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 390

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P +EHY CMV +L RA  + +A E V  M ++P   +WG LL    + G + LG+ + + 
Sbjct: 391 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 450

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           L +    N+G YI+++N+Y+  G WD   R+R  MK+SG+ K PG S IE +  +  F+A
Sbjct: 451 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLA 510

Query: 429 KDTSGDKSEQIYLILERLLGLMREEGYV 456
              +  K ++IY++LE + G ++  GY 
Sbjct: 511 GGLNHPKRKEIYMMLEEINGWLKSHGYT 538



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 20/287 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V WN MI GY+Q G   E   LFR ML +   +P+ VTV+SVL ACGQ   +  
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA-KPNEVTVLSVLSACGQLGALES 274

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++  + I+ ++ +  AL+ MY+KCGSL+ AR + D++ DKD V+++++I GY +
Sbjct: 275 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 334

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL----DLVREMQAS-GVRPNAV 175
           HGF ++A+ LF+ M R GL   N    G++    H   +    D+  +M+   G+ P   
Sbjct: 335 HGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 394

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG----AQRV 231
               + +L     +++   E+    VKN    NI     +  T      LHG     +++
Sbjct: 395 HYGCMVNLLGRAGHVEQAYEL----VKN---MNIEPDPVLWGTLLGACRLHGKIALGEKI 447

Query: 232 FDRFKGRSLI---IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            +    ++L     +  + + YAA G+      L   M ++G++ +P
Sbjct: 448 VELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 494



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 37/271 (13%)

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y   G ++ ++ LF   + P +  W A+I G      HE  L+   +M   GV PNA T 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           SSI  L      ++ GK +H  AVK  +D ++YV T ++D YA+ G +  AQ++FD    
Sbjct: 132 SSILKL----CPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187

Query: 238 RSLIIWTAIISAYAAHGD-------------------------------ASKAVSLFNEM 266
           +SL+  TA+++ YA HG+                                ++A+ LF  M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           L    +P+ VT  +VLSAC   G ++    + + +    GIQ +V     +V + S+   
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGS 306

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           + +A     K+  K     W +++ G ++ G
Sbjct: 307 LEDARLVFDKIDDK-DVVAWNSMIVGYAMHG 336



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           +IH    ++  D +  +   +  +YA  G L  +  +F R +  S+  WTAII  +A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
              +A++ + +ML  G++P+  TF+++L  C       +     ++ + + G    +   
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP-----IEPGKALHSQAVKLGFDSDLYVR 162

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374
             ++ V +R   +  A +    MP K    +  A+L   +  G+++  + + D +   E 
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSL-TAMLTCYAKHGELDAARVLFDGM---EE 218

Query: 375 ENTGNYIIMANLYSQAGRWDEA 396
            +   + +M + Y+Q G  +EA
Sbjct: 219 RDGVCWNVMIDGYTQNGMPNEA 240


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 261/451 (57%), Gaps = 5/451 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH-NF 67
           W +MI GY+  G   E    +  M    V  P   T  ++ +ACG + ++  G +VH   
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGV-GPVSFTFSALFKACGAALNMDLGKQVHAQT 168

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           ++      DL++ N++I +Y KCG L  AR + DEMS++D VS++ +I  Y  +G +E A
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             LF  +    +  W A+++G  QN R +  L+  ++MQ  G+  + VT++ + S  +  
Sbjct: 229 SGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQL 288

Query: 188 SNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             +K    I   A ++ +    N+ V +A+ID Y+K G    A +VF+  K R++  +++
Sbjct: 289 GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSS 348

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  YA HG A  A+ LF++ML   I+P+ VTF  +LSAC+H+GLV++   +F  M   +
Sbjct: 349 MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFF 408

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G+ PS +HYACMV +L RA  + EA + V  MP++P+  VWGALL    I G+ ++ +  
Sbjct: 409 GVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIA 468

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG-LQ 424
            + LF++EP   GNYI+++N+Y+ AGRW+E  ++R+ ++E G  K PG SW E   G + 
Sbjct: 469 ANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIH 528

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            F A DT+  +S +I   L++L+  +R  GY
Sbjct: 529 DFFAGDTTHPRSSEIRQALKQLIERLRSHGY 559



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 81/369 (21%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC----GSLDYARALL 100
           ++S+L  C   S I    +VH  +I + +    ++   LI M  K     GS  Y   + 
Sbjct: 45  LMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGS--YPLLVF 99

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
            +++  +   ++A+I GY + G + ++ + +  M+R                        
Sbjct: 100 GQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRR------------------------ 135

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTY 219
                   GV P + T S++F       N+  GK++H   +    +  ++YV  ++ID Y
Sbjct: 136 -------DGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLY 188

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K GFL  A++VFD    R ++ WT +I AYA +GD   A  LF+++ +     D V +T
Sbjct: 189 VKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSK----DMVAWT 244

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           A+++  A +G   +A + F  M                       + +   T+ V+   V
Sbjct: 245 AMVTGYAQNGRPKEALEYFQKM-----------------------QDVGMETDEVTLAGV 281

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEA 396
             +    GA+ +   I    E   F            +GN ++   + ++YS+ G  DEA
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGF----------GPSGNVVVGSALIDMYSKCGSPDEA 331

Query: 397 DRVREQMKE 405
            +V E MKE
Sbjct: 332 YKVFEVMKE 340



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 128/324 (39%), Gaps = 81/324 (25%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL-------------RP------- 40
           MS+RD+VSW  +I  Y++ G  E    LF ++ +  ++             RP       
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYF 263

Query: 41  ----------DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYA 88
                     D VT+  V+ AC Q   +     + +    S      ++ + +ALI MY+
Sbjct: 264 QKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYS 323

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCGS D A  + + M +++  SYS++I GY +HG    A+ LF                 
Sbjct: 324 KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH---------------- 367

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG-----YAVKN 203
                          +M  + +RPN VT   I S  SH   ++ G+++       + V  
Sbjct: 368 ---------------DMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI----IWTAIISAYAAHGDASKA 259
             D        ++D   + G L   +   D  K   +     +W A++ A   HG+   A
Sbjct: 413 SPDH----YACMVDLLGRAGCL---EEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIA 465

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLS 283
               NE+    ++P+ +    +LS
Sbjct: 466 QIAANELFK--LEPNGIGNYILLS 487



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR--VFDRFKGRSLIIWTAIISAYA 251
           K++H + ++N   +  YV T +I    K     G+    VF +    +  +WTA+I  YA
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
             G  S++ + +  M  +G+ P   TF+A+  AC  +  +D    +        G    +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
                M+ +  +   +  A +   +M  +     W  L+   +  GD+E    + D   +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS-WTELIVAYAKYGDMESASGLFD---D 234

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +  ++   +  M   Y+Q GR  EA    ++M++ G+
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 257/444 (57%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++  +NS+I  Y+    Y +   +++++L   +  PD  T   + ++C        
Sbjct: 68  VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYL 127

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  + +   +  +   NALI MY K   L  A  + DEMS++D +S+++++SGY  
Sbjct: 128 GKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYAR 187

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++KA  LF +M    + +W A+ISG      +   +D  REMQ +G+ P+ +++ S+
Sbjct: 188 LGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H  +L+ GK IH YA +    +   V  A+I+ Y+K G L  A ++F++ KG+ +
Sbjct: 248 LPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDV 307

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+ +IS YA HG+A +A   F EM    ++P+ +TF  +LSAC+H GL  +    F+ 
Sbjct: 308 ISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDM 367

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I+P +EHY C++ VL+RA ++  A E    MPVKP +K+WG+LL      G+++
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLD 427

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +     DHL E+EP++ GNY+++AN+Y+  G+W++  R+R+ +++  + K PG S IE +
Sbjct: 428 VALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVN 487

Query: 421 GGLQSFVAKDTSGDKSEQIYLILE 444
             +Q FVA D S     +I L+L+
Sbjct: 488 NIVQEFVAGDNSKPFWTEISLVLQ 511



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/398 (20%), Positives = 171/398 (42%), Gaps = 46/398 (11%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +I   +    ++   ++ +  K G +DYA  L +++S+ +   Y++II  Y  + 
Sbjct: 28  KIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNS 87

Query: 123 FVEKAMDLFQVMKR-----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                + +++ + R     P   T+  +               +   +   G R + VT 
Sbjct: 88  LYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTE 147

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +++  ++  F +L    ++         +R++    +++  YA+ G +  A+ +F     
Sbjct: 148 NALIDMYMKFDDLVDAHKV----FDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMID 203

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD--KAW 295
           ++++ WTA+IS Y   G   +A+  F EM   GI+PD ++  +VL +CAH G ++  K  
Sbjct: 204 KTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWI 263

Query: 296 DIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATE-------------------- 332
            ++    G   Q G+  ++       G+LS+A ++ E T+                    
Sbjct: 264 HMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNA 323

Query: 333 ------FV--SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
                 F+   +  VKP+   +  LL   S  G  + G    D +   ++IEP+   +Y 
Sbjct: 324 HRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPK-IEHYG 382

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            + ++ ++AG+ + A  + + M     +KI G     C
Sbjct: 383 CLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSC 420



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K+IH   + +   ++ ++ T ++D   K G +  A R+F++    ++ ++ +II AY  +
Sbjct: 27  KKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 254 GDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSG 289
                 + ++ ++L   I+ PD  TF  +  +CA  G
Sbjct: 87  SLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLG 123


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 261/455 (57%), Gaps = 3/455 (0%)

Query: 3   KRDI-VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS-DIVF 60
           +RD  V WN++I+G+++   + E    F +M  +    P  VT VSVL ACG+ + D++ 
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAA-PTPVTYVSVLSACGKGTGDVLL 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM+VH  V+ S +  DL + NAL+ MYA+C  ++ A  L D M  +  VS+++++SG   
Sbjct: 164 GMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTR 223

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V++A DLF  M      +W A+I G VQ  R    L++ REMQ S V  +  T+ S+
Sbjct: 224 LGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSV 283

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ G+ +  Y  +     + +V  A+ID Y+K G +  A  VF     R  
Sbjct: 284 ITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDK 343

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTAII   A +G   +A+ +F+ M+     PD VTF  VL+AC H+GLVDK  + F +
Sbjct: 344 FTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLS 403

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P+V HY C++ +  RA +I+EA + + +MP+ P++ +WG LL    + G+ E
Sbjct: 404 MRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSE 463

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V + L +++PEN+  Y +++N+Y++  RW++  R+R  + E G+ K PG S IE +
Sbjct: 464 IGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMN 523

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G +  FVA D S   S++IY  LE ++  +   GY
Sbjct: 524 GIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGY 558



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 141/327 (43%), Gaps = 55/327 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW +MI GY Q   + E   +FREM  S V   D  T+VSV+ AC Q   +  
Sbjct: 237 MPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNV-SADEFTMVSVITACAQLGALEM 295

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  ++    IKMD ++ NALI MY+KCGS++ A  +  +M  +D+ +++AII G  V
Sbjct: 296 GEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAV 355

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-----QASGVRPNAV 175
           +G+ E+A+++F  M     +       G++    H  ++D  RE      +   + PN V
Sbjct: 356 NGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVV 415

Query: 176 TISSIFSLFSH----------------------FSNLKGGKEIHGYA-----VKNRY--- 205
               I  LF                        +  L     +HG +     V  R    
Sbjct: 416 HYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQM 475

Query: 206 -DRNIYVATAIIDTYAKTGFLHGAQRV--------FDRFKGRSLIIWTAIISAYAAHGDA 256
              N  V T + + YAK       +R+          +  G SLI    II  + A GD 
Sbjct: 476 DPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVA-GDQ 534

Query: 257 S---------KAVSLFNEMLNNGIQPD 274
           S         K  S+ N++ N G  PD
Sbjct: 535 SHPMSKEIYCKLESIINDLNNVGYFPD 561



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 9/258 (3%)

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
           R +AV    R M A G  P+A T   +    +  S+    + +H + VK    RN +VAT
Sbjct: 24  REDAVAGYAR-MLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVAT 82

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           +++  YA  G    A+ +    +  + ++W A+IS +       +A   F +M   G  P
Sbjct: 83  SLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAP 142

Query: 274 DPVTFTAVLSACAH-SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
            PVT+ +VLSAC   +G V     +   + G  G+ P +     +V + +    +  A +
Sbjct: 143 TPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWK 201

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAG 391
               M V+ S   W +LL G +  G V+  +     LF   PE +T ++  M + Y QA 
Sbjct: 202 LFDGMQVR-SVVSWTSLLSGLTRLGRVDEAR----DLFGRMPERDTVSWTAMIDGYVQAA 256

Query: 392 RWDEADRVREQMKESGLA 409
           R+ EA  +  +M+ S ++
Sbjct: 257 RFREALEMFREMQCSNVS 274



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 23/329 (6%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD  T   +L+A  + S       VH  V++  +  +  +  +L+  YA  G    ARAL
Sbjct: 41  PDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARAL 100

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRH 155
           L E      V ++A+ISG+       +A   F  M R G +    T+ +V+S   +    
Sbjct: 101 LSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG- 159

Query: 156 EAVLDLVREMQ------ASGVRPNAVTISSIFSLFSHFSNLKGG-KEIHGYAVKNRYDRN 208
               D++  MQ       SGV P+    +++  +++  ++++   K   G  V     R+
Sbjct: 160 ----DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQV-----RS 210

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           +   T+++    + G +  A+ +F R   R  + WTA+I  Y       +A+ +F EM  
Sbjct: 211 VVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQC 270

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
           + +  D  T  +V++ACA  G ++    +   MS Q GI+        ++ + S+   I 
Sbjct: 271 SNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIE 329

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISG 357
            A +    M  +     W A++ G +++G
Sbjct: 330 RALDVFKDMHHR-DKFTWTAIILGLAVNG 357


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 164/493 (33%), Positives = 262/493 (53%), Gaps = 40/493 (8%)

Query: 3    KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            K DIV+WNS+++GY+      +  A+ +  +    L+P+  ++ S+LQA  +   +  G 
Sbjct: 724  KPDIVTWNSLLSGYASKALSRDAIAVLKR-IQIAGLKPNTSSISSLLQAVYEPGLVKLGK 782

Query: 63   EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD--------------- 107
             +H +VI + +  D+++   LI MY K G L YAR + D M +K+               
Sbjct: 783  AIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTG 842

Query: 108  --------------------EVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWN 143
                                 V++++++SGY   G  EKA+ +   MK+    P + +W 
Sbjct: 843  LLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWT 902

Query: 144  AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            A++SG  +N      L +  +MQ  GV PN+ TISS+  +    S L  GKE+H + +KN
Sbjct: 903  AILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKN 962

Query: 204  RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
               R+ +VATA++D YAK+G L  A  +F   K + L  W  +I  YA      + +++F
Sbjct: 963  NLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVF 1022

Query: 264  NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            N ML  GI+PD +TFT+VLS C +SGLV + W  F+ M   YG+ P++EH +CMV +L R
Sbjct: 1023 NAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGR 1082

Query: 324  ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
            +  + EA +F+  MP+KP A +WGA L    I  D+EL +     L  +EP N+ NY++M
Sbjct: 1083 SGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMM 1142

Query: 384  ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
             NLYS   RW + +R+R  M  + +      SWI+    +  F A+  +     +IY  L
Sbjct: 1143 INLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYFEL 1202

Query: 444  ERLLGLMREEGYV 456
             +L+  M++ GY+
Sbjct: 1203 YKLVSEMKKSGYM 1215



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 222/450 (49%), Gaps = 47/450 (10%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M KRD ++WN ++    Q G +E+   LFR M  S     D  T+V +LQ C        
Sbjct: 586  MPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDS-TMVKLLQVCSNKEGFAQ 644

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G ++H +V+    + ++ +CN+LI MY++ G L+ +R + + M D++  S+++I+S Y  
Sbjct: 645  GRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTR 704

Query: 121  HGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
             G+V+ AM L   M+    +P + TWN+++SG          + +++ +Q +G++PN  +
Sbjct: 705  LGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSS 764

Query: 177  ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            ISS+         +K GK IHGY ++N+   ++YV T +ID Y KTG+L  A+ VFD   
Sbjct: 765  ISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMD 824

Query: 237  GRSLIIWTAII-----------------------------------SAYAAHGDASKAVS 261
             ++++ W ++I                                   S YA  G   KA++
Sbjct: 825  EKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALA 884

Query: 262  LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP---SVEHYACMV 318
            +  +M  NG++P+ V++TA+LS C+ +G       IF  M  + G+ P   ++     ++
Sbjct: 885  VVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEE-GVSPNSATISSLLRIL 943

Query: 319  GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
            G LS      E   F  K  +   A V  AL+   + SGD++    +   + + +P  + 
Sbjct: 944  GCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGI-KNKPLASW 1002

Query: 379  NYIIMANLYSQAGRWDEADRVREQMKESGL 408
            N +IM   Y+   R +E   V   M E+G+
Sbjct: 1003 NCMIMG--YAMFRRGEEGIAVFNAMLEAGI 1030



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 148/318 (46%), Gaps = 37/318 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           R+ VSW   +      G  E+ K L  F  + N  V   D V +  V + C        G
Sbjct: 486 RNQVSWRDFLEKAEDFGV-EKYKVLEEFVRLQNKGV-NFDEVVLAMVFRICAVLMYRFLG 543

Query: 62  MEVHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +H  +I+  +   D  + +AL+G Y +C SLD A  + DEM  +D+++++ I+   + 
Sbjct: 544 FTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQ 603

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  EKA+ LF+VM+  G   +++ +  L+Q                             
Sbjct: 604 SGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQ----------------------------- 634

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + S+      G++IHGY ++  ++ N+ +  ++I  Y++ G L  +++VF+    R+L
Sbjct: 635 --VCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNL 692

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W +I+S+Y   G    A+ L +EM   G++PD VT+ ++LS  A   L   A  +   
Sbjct: 693 SSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKR 752

Query: 301 MSGQYGIQPSVEHYACMV 318
           +    G++P+    + ++
Sbjct: 753 IQIA-GLKPNTSSISSLL 769



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            +  + + SWN MI GY+     EE  A+F  ML + +  PD +T  SVL  C  S  +  
Sbjct: 994  IKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGI-EPDAITFTSVLSVCKNSGLVRE 1052

Query: 61   GMEVHNFVIESHIKMDLWI--CNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISG 117
            G +  + ++ SH  +   I  C+ ++ +  + G LD A   +  M  K D   + A +S 
Sbjct: 1053 GWKYFD-LMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSS 1111

Query: 118  YMVHGFVEKA 127
              +H  +E A
Sbjct: 1112 CKIHRDLELA 1121


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 265/460 (57%), Gaps = 5/460 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+VSWN MI  Y   G + E   L+++ L+    +    T VS+L AC     +  
Sbjct: 268 MKKRDMVSWNVMIGCYVLNGDFHEALELYQK-LDMEGFKRTKATFVSILGACSSVKALAQ 326

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+ ++E  +  ++ +  AL+ MYAKCGSL+ AR + + M ++D V++S +I  Y  
Sbjct: 327 GRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYAS 386

Query: 121 HGFVEKAMDLFQVMKRPGLS---TWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVT 176
           +G+ + A    +V  R G     +WNA+I+  VQN    A + + REM  A+G++P+AVT
Sbjct: 387 NGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVT 446

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
             ++    +    L   K +H    ++  + N+ V   +I+ YA+ G L  A+R+F   K
Sbjct: 447 FIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++++ WTA+++A++ +G  ++A+ LF EM   G++PD VT+T++L  C H G +++ W 
Sbjct: 507 EKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWR 566

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F  M+  + + P+ +H+A MV +L R+ R+ +A E +  MP +P    W   L    I 
Sbjct: 567 YFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIH 626

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G +ELG+   + ++E++P +T  YI M+N+Y+  G W++   VR++M+E GL K+PG S+
Sbjct: 627 GKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSF 686

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           IE  G L  F +      ++++I   L RL GLMR  GYV
Sbjct: 687 IEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYV 726



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 195/415 (46%), Gaps = 48/415 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD  SWN++I  +SQ G +     +F+EM     ++P+  T ++V+        +  
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD--VKPNSTTYINVISGFSTPEVLPE 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  ++ +    DL +  ALI MY KCGS   AR + D+M  +D VS++ +I  Y++
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++L+Q                               ++   G +    T  SI
Sbjct: 286 NGDFHEALELYQ-------------------------------KLDMEGFKRTKATFVSI 314

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    L  G+ +H + ++   D  + VATA+++ YAK G L  A++VF+  K R  
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 241 IIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + W+ +I AYA++G   DA KA  +F+ + +     D +++ A+++    +G    A  I
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSR----DTISWNAMITTYVQNGCAVAAMKI 430

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGAS 354
           F  M+G  G++P    +  ++   +   R+SE       +S+  ++ +  V   L+   +
Sbjct: 431 FREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYA 490

Query: 355 ISGDVELGKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             G +E      + LF    E T  ++  M   +SQ GR+ EA  + ++M   G+
Sbjct: 491 RCGSLEEA----ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 191/410 (46%), Gaps = 45/410 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R++VSWN+MIA Y+Q G   E   L+  M N   L  D VT VSVL AC   S +  G 
Sbjct: 72  QRNVVSWNAMIAAYAQNGHSTEALVLYWRM-NLQGLGTDHVTFVSVLGAC---SSLAQGR 127

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+HN V  S +     + NAL+ MYA+ GS                              
Sbjct: 128 EIHNRVFYSGLDSFQSLANALVTMYARFGS------------------------------ 157

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V  A  +FQ ++    ++WNAVI    Q+      L + +EM+   V+PN+ T  ++ S
Sbjct: 158 -VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVIS 215

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            FS    L  G++IH   V N +D ++ VATA+I+ Y K G  H A+ VFD+ K R ++ 
Sbjct: 216 GFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVS 275

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  +I  Y  +GD  +A+ L+ ++   G +    TF ++L AC+    + +   + ++  
Sbjct: 276 WNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHI 334

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG---DV 359
            + G+   V     +V + ++   + EA +  + M  +  A  W  L+   + +G   D 
Sbjct: 335 LERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDA 393

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV-REQMKESGL 408
              + V D L      +T ++  M   Y Q G    A ++ RE    +GL
Sbjct: 394 RKARKVFDRL---GSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 170/407 (41%), Gaps = 81/407 (19%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           +PD VT ++VL +C    D+V G  +H  +  S  + D  + NALI MY KC SL  AR+
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 99  LLDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + + M    ++ VS++A+I+ Y  +G   +A+ L+  M   GL T               
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGT--------------- 108

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
                           + VT  S+       S+L  G+EIH     +  D    +A A++
Sbjct: 109 ----------------DHVTFVSVLGA---CSSLAQGREIHNRVFYSGLDSFQSLANALV 149

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM---------- 266
             YA+ G +  A+R+F   + R    W A+I A++  GD S A+ +F EM          
Sbjct: 150 TMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTT 209

Query: 267 ------------------------LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
                                   + NG   D V  TA+++     G   +A ++F+ M 
Sbjct: 210 YINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMK 269

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDV 359
            +  +  +V     M+G         EA E   K+ +   K +   + ++L   S    +
Sbjct: 270 KRDMVSWNV-----MIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 360 ELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             G+ V  H+ E  ++ E       + N+Y++ G  +EA +V   MK
Sbjct: 325 AQGRLVHSHILERGLDSE-VAVATALVNMYAKCGSLEEARKVFNAMK 370


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 261/451 (57%), Gaps = 5/451 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH-NF 67
           W +MI GY+  G   E    +  M    V  P   T  ++ +ACG + ++  G +VH   
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGV-GPVSFTFSALFKACGAALNMDLGKQVHAQT 168

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           ++      DL++ N++I +Y KCG L  AR + DEMS++D VS++ +I  Y  +G +E A
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             LF  +    +  W A+++G  QN R +  L+  ++MQ  G+  + VT++ + S  +  
Sbjct: 229 SGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQL 288

Query: 188 SNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             +K    I   A ++ +    N+ V +A+ID Y+K G    A +VF+  K R++  +++
Sbjct: 289 GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSS 348

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  YA HG A  A+ LF++ML   I+P+ VTF  +LSAC+H+GLV++   +F  M   +
Sbjct: 349 MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFF 408

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G+ PS +HYACMV +L RA  + EA + V  MP++P+  VWGALL    I G+ ++ +  
Sbjct: 409 GVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIA 468

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG-LQ 424
            + LF++EP   GNYI+++N+Y+ AGRW+E  ++R+ ++E G  K PG SW E   G + 
Sbjct: 469 ANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIH 528

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            F A DT+  +S +I   L++L+  +R  GY
Sbjct: 529 DFFAGDTTHPRSSEIRQALKQLIERLRSHGY 559



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 81/369 (21%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC----GSLDYARALL 100
           ++S+L  C   S I    +VH  +I + +    ++   LI M  K     GS  Y   + 
Sbjct: 45  LMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGS--YPLLVF 99

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
            +++  +   ++A+I GY + G + ++ + +  M+R                        
Sbjct: 100 GQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRR------------------------ 135

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTY 219
                   GV P + T S++F       N+  GK++H   +    +  ++YV  ++ID Y
Sbjct: 136 -------DGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLY 188

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K GFL  A++VFD    R ++ WT +I AYA +GD   A  LF+++       D V +T
Sbjct: 189 VKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL----PLKDMVAWT 244

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           A+++  A +G   +A + F  M                       + +   T+ V+   V
Sbjct: 245 AMVTGYAQNGRPKEALEYFQKM-----------------------QDVGMETDEVTLAGV 281

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEA 396
             +    GA+ +   I    E   F            +GN ++   + ++YS+ G  DEA
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGF----------GPSGNVVVGSALIDMYSKCGSPDEA 331

Query: 397 DRVREQMKE 405
            +V E MKE
Sbjct: 332 YKVFEVMKE 340



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 127/324 (39%), Gaps = 81/324 (25%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL-------------RP------- 40
           MS+RD+VSW  +I  Y++ G  E    LF ++    ++             RP       
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYF 263

Query: 41  ----------DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYA 88
                     D VT+  V+ AC Q   +     + +    S      ++ + +ALI MY+
Sbjct: 264 QKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYS 323

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCGS D A  + + M +++  SYS++I GY +HG    A+ LF                 
Sbjct: 324 KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH---------------- 367

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG-----YAVKN 203
                          +M  + +RPN VT   I S  SH   ++ G+++       + V  
Sbjct: 368 ---------------DMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI----IWTAIISAYAAHGDASKA 259
             D        ++D   + G L   +   D  K   +     +W A++ A   HG+   A
Sbjct: 413 SPDH----YACMVDLLGRAGCL---EEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIA 465

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLS 283
               NE+    ++P+ +    +LS
Sbjct: 466 QIAANELFK--LEPNGIGNYILLS 487



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR--VFDRFKGRSLIIWTAIISAYA 251
           K++H + ++N   +  YV T +I    K     G+    VF +    +  +WTA+I  YA
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
             G  S++ + +  M  +G+ P   TF+A+  AC  +  +D    +        G    +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
                M+ +  +   +  A +   +M  +     W  L+   +  GD+E    + D   +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS-WTELIVAYAKYGDMESASGLFD---D 234

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +  ++   +  M   Y+Q GR  EA    ++M++ G+
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 254/458 (55%), Gaps = 37/458 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNSMI+GYS+ GF +E   LF EM       PD +T+VSVL ACG   D+  
Sbjct: 189 MGDRDLVSWNSMISGYSKMGFTKEAIGLFMEM-REEGFEPDEMTLVSVLGACGDLGDLGL 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  FV+E  ++++ ++ +ALI MY KCG L  AR + D M +KD V           
Sbjct: 248 GRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVV----------- 296

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNA+I+G  QN      + L   M+ +G  P+ VT+  +
Sbjct: 297 --------------------TWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEV 336

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L  GK +  +A +     ++YVA+A+ID YAK G L  A RVF+    ++ 
Sbjct: 337 LSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNE 396

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W A+ISA A HG A +A+SLF  M   N  +QP+ +TF  VLSAC H+GLVD+   +F
Sbjct: 397 VSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLF 456

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M+  +G+ P VEHY+CMV + +RA  + EA + + KMP KP   V G+LL       +
Sbjct: 457 ESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRN 516

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ++G+ V     E+E  N+GNY+I + +Y+   RWD++ ++R  M++ G++K PG SWI+
Sbjct: 517 ADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWID 576

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               +  F A D+  + S  IY +L      M+ EGY+
Sbjct: 577 IGAHVHEFHAGDSLHNHSMNIYQLLNE---EMKREGYI 611



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 199/412 (48%), Gaps = 42/412 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQG-GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           ++K +I ++N M+ G +     Y+ C  L+ + L S  L+ +  T   +  ACG    +V
Sbjct: 87  LTKPNIYAFNVMLRGLATTWKKYDFCVELYYK-LKSLGLKANNFTYPFLFIACGNVRGLV 145

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G   H  V ++ +  D ++ ++LI MYA+CG + +AR + DEM D+D VS++++ISGY 
Sbjct: 146 HGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYS 205

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             GF ++A+ LF                                EM+  G  P+ +T+ S
Sbjct: 206 KMGFTKEAIGLFM-------------------------------EMREEGFEPDEMTLVS 234

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +        +L  G+ + G+ ++ + + N Y+ +A+ID Y K G L  A+RVFD    + 
Sbjct: 235 VLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKD 294

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIF 298
           ++ W AII+ YA +G +++A+ LFN M   G  PD VT   VLSAC+  G +D   W   
Sbjct: 295 VVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKW--V 352

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              + + G+Q  V   + ++ + ++   + +A      MP K     W A++   +  G 
Sbjct: 353 ETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVS-WNAMISALAFHGQ 411

Query: 359 VE----LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
            +    L + +      ++P N   +I + +    AG  DE  ++ E M  S
Sbjct: 412 AQEALSLFRRMSKDNGTVQP-NDITFIGVLSACVHAGLVDEGRQLFESMNLS 462



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           S+     LL ++ D  +++Y++++               F  + +P +  +N ++ GL  
Sbjct: 60  SIPKPNFLLSKIIDLKDLAYASLV---------------FNQLTKPNIYAFNVMLRGLAT 104

Query: 152 N-NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
              +++  ++L  ++++ G++ N  T   +F    +   L  GK  H    K   D + Y
Sbjct: 105 TWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEY 164

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V  ++I  YA+ G +  A++VFD    R L+ W ++IS Y+  G   +A+ LF EM   G
Sbjct: 165 VNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224

Query: 271 IQPDPVTFTAVLSACAHSG 289
            +PD +T  +VL AC   G
Sbjct: 225 FEPDEMTLVSVLGACGDLG 243


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 268/467 (57%), Gaps = 9/467 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL-FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++  +NS I G+S  G  +  K+  F        L PD +T   +++AC Q   +  G++
Sbjct: 77  NLFIYNSFIRGFS--GSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H  +I      D+++ N+L+ MY+  G +  A  +   +S  D VS++++++GY+  G 
Sbjct: 135 AHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGD 194

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V  A  LF  M    L TW+ +ISG  +N+  +  ++L   +Q+ GV  N   + S+ + 
Sbjct: 195 VTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIAS 254

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +H   L+ G+  H Y ++N+   N+ + TA++D YA+ G +  A  VFD+  GR  + W
Sbjct: 255 CAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSW 314

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           T +I+ +A HG A KA+  F+ M   G+ P  +TFTAVLSAC+H GLV++  ++F +M  
Sbjct: 315 TTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKR 374

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y I+P +EHY CMV +L RA +++EA +FV++MP+KP+A +WGALL    I  + E+ +
Sbjct: 375 DYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAE 434

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E++PE++G Y++++N+Y++  +W+  + +R+ MKE G+ K PG +  E  G +
Sbjct: 435 RAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKV 494

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEE 464
             F   D +  + +QI  + E +LG +R  GY       L D  EEE
Sbjct: 495 HKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEE 541



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 103/170 (60%), Gaps = 5/170 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++V+W+ MI+GY++  F+++   L+  +L S  +  +   +VSV+ +C     +  
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYF-LLQSEGVHANETVMVSVIASCAHLGALEL 263

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H++++ + + ++L +  AL+ MYA+CGS+D A  + D++  +D +S++ +I+G+ +
Sbjct: 264 GERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAM 323

Query: 121 HGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQ 166
           HG+ EKA++ F  M++ GL+    T+ AV+S        E  L+L   M+
Sbjct: 324 HGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMK 373



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 110/253 (43%), Gaps = 38/253 (15%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +S L++C   S +     +H  +I +H   D++  + LI +      LDYA  +  ++ +
Sbjct: 19  LSFLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
            +   Y++ I G+      +K+   +   KR GL   N     LV+    +  LD+    
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDM---- 131

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
                                      G + HG  +++ +D ++YV  +++  Y+  G +
Sbjct: 132 ---------------------------GIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDI 164

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A  VF R     ++ WT++++ Y   GD + A  LF++M    +    VT++ ++S  
Sbjct: 165 KSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNL----VTWSVMISGY 220

Query: 286 AHSGLVDKAWDIF 298
           A +   DKA +++
Sbjct: 221 AKNSFFDKAIELY 233



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 7/217 (3%)

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S     + L   K IH + ++     +++ A+ +I        L  A +VF + +  +L
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            I+ + I  ++   D  K+   + +   NG+ PD +T+  ++ AC   G +D        
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  ++G    V     +V + S    I  A+    ++        W +++ G   SGDV 
Sbjct: 139 II-RHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVS-WTSMVAGYIKSGDVT 196

Query: 361 LGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEA 396
             +     LF+  PE N   + +M + Y++   +D+A
Sbjct: 197 SAR----KLFDKMPEKNLVTWSVMISGYAKNSFFDKA 229


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 268/478 (56%), Gaps = 47/478 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+++W+++IAGY+Q G   E   +FR+M     L P+ VT+ S+L  C     +++G 
Sbjct: 332 KLDVITWSAVIAGYAQKGHGFEALDVFRQM-QLYGLEPNVVTLASLLSGCASVGALLYGK 390

Query: 63  EVHNFVIESHIKM-------DLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSA 113
           + H +VI++ + +       DL + N LI MYAKC S   AR++ D  E  DK+ V+++ 
Sbjct: 391 QTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTV 450

Query: 114 IISGYMVHGFVEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
           +I GY  HG    A+ LF Q+ K                              Q + ++P
Sbjct: 451 MIGGYAQHGEANDALKLFAQIFK------------------------------QKTSLKP 480

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI-YVATAIIDTYAKTGFLHGAQRV 231
           NA T+S      +    L+ G+++H YA++N  +  + YV   +ID Y+K+G +  A+ V
Sbjct: 481 NAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAV 540

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FD  K R+++ WT++++ Y  HG   +A+ LF++M   G   D +TF  VL AC+HSG+V
Sbjct: 541 FDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMV 600

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
           D+    F+ M   +GI P  EHYACMV +L RA R++EA E +  M ++P+A VW ALL 
Sbjct: 601 DQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLS 660

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
            + I  ++ELG++    L E+  EN G+Y +++NLY+ A RW +  R+R  MK +G+ K 
Sbjct: 661 ASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKR 720

Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           PG SWI+      +F   D S  +SEQIY +L  L+  +++ GYV      L +V++E
Sbjct: 721 PGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDE 778



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 208/422 (49%), Gaps = 52/422 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLN--SPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           DIVSWNS++A Y QGG       +   M N  S  LRPD +T+V++L AC     +  G 
Sbjct: 195 DIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGK 254

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH F + + +  D+++ NAL+ MYAKC  ++ A  + + +  KD VS++A+++GY   G
Sbjct: 255 QVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIG 314

Query: 123 FVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             + A+ LF++M+   +     TW+AVI+G  Q       LD+ R+MQ  G+ PN VT++
Sbjct: 315 SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLA 374

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRN-------IYVATAIIDTYAKTGFLHGAQRV 231
           S+ S  +    L  GK+ H Y +KN  + N       + V   +ID YAK      A+ +
Sbjct: 375 SLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSI 434

Query: 232 FDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAH 287
           FD  +G  ++++ WT +I  YA HG+A+ A+ LF ++      ++P+  T +  L ACA 
Sbjct: 435 FDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACAR 494

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
            G +     +       Y ++   E     VG                            
Sbjct: 495 LGELRLGRQLH-----AYALRNENESEVLYVG---------------------------N 522

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
            L+   S SGD++  + V D++   +  N  ++  +   Y   GR +EA  + +QM++ G
Sbjct: 523 CLIDMYSKSGDIDAARAVFDNM---KLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLG 579

Query: 408 LA 409
            A
Sbjct: 580 FA 581



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 160/320 (50%), Gaps = 33/320 (10%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S   +  WN++I    + G  ++    + +M     L PD  T   VL+ACG+   +  G
Sbjct: 88  SHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWL-PDHYTFPFVLKACGEIPSLRHG 146

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             VH  V  + +  +++ICN+++ MY +CG+LD A  + DE+ ++               
Sbjct: 147 ASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER--------------- 191

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM---QASGVRPNAVTIS 178
                        K   + +WN++++  VQ  +    L +   M    +  +RP+A+T+ 
Sbjct: 192 -------------KIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLV 238

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +I    +    L+ GK++HG++V+N    +++V  A++  YAK   ++ A +VF+  K +
Sbjct: 239 NILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK 298

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+++ Y+  G    A+SLF  M    I+ D +T++AV++  A  G   +A D+F
Sbjct: 299 DVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVF 358

Query: 299 NAMSGQYGIQPSVEHYACMV 318
             M   YG++P+V   A ++
Sbjct: 359 RQMQ-LYGLEPNVVTLASLL 377


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 263/470 (55%), Gaps = 16/470 (3%)

Query: 9   WNSMIAGYSQG-----GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           WN++I  + Q      G      ++F  M    V +PD  T   +LQ+    S +  G  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGV-QPDFHTFPFLLQSFASPSLLHLGRS 85

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  ++   + +D ++  +LI MY+ CG+L +AR + DE+   D  S+++II+     G 
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGL 145

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV---RPNAVTISSI 180
           V+ A +LF VM    + +W+ +I+G V+  +++  L L REMQ  GV   RPN  T+S +
Sbjct: 146 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 205

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRS 239
            +       L+ GK  H Y  K     ++ + TA+ID YAK G +  A  VF      + 
Sbjct: 206 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W+A+IS  A HG A + V LF++M+N G++P+ VTF AV  AC H GLV +  D   
Sbjct: 266 VMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLR 325

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M+  Y I P+++HY CMV +  RA RI EA   V  MP++P   VWGALL G+ + GD+
Sbjct: 326 RMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDI 385

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E  +     L E+EP N+G Y++++N+Y++ GRW++   VR+ M+  G+ K+PG S IE 
Sbjct: 386 ETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 445

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEE 463
            G L  F   D S  ++ QI+++LE +L  ++ EGY      VLLD  EE
Sbjct: 446 GGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEE 495



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 42/263 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFRE--MLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +R+++SW+ MI GY + G Y+E  ALFRE  ML    +RP+  T+  VL ACG+   +
Sbjct: 156 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 215

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISG 117
             G   H ++ +  + +D+ +  ALI MYAKCGS++ A  +   +  +KD +++SA+ISG
Sbjct: 216 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 275

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
             +HG  E+ + LF                                +M   GVRPNAVT 
Sbjct: 276 LAMHGLAEECVGLFS-------------------------------KMINQGVRPNAVTF 304

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFD 233
            ++F    H   +  GK+   Y  +   D +I         ++D Y + G +  A  V  
Sbjct: 305 LAVFCACVHGGLVSEGKD---YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVK 361

Query: 234 RFKGRS-LIIWTAIISAYAAHGD 255
                  +++W A++S    HGD
Sbjct: 362 SMPMEPDVLVWGALLSGSRMHGD 384


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 261/449 (58%), Gaps = 3/449 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ VSW++MIA Y Q G+ EE   LF  M+     +P+     S+L A      +  
Sbjct: 276 MPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEG-FKPNISCFSSILSALASVEALQA 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +H  V +   + D+++ ++LI MY KCG     R L D + +K+ VS++A++ GY +
Sbjct: 335 GMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSL 394

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +E+A  LF +M      +W+A+I+G +   + + + ++  EM   G  PN  T SS+
Sbjct: 395 NGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSL 454

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  GK +HG  VK     + YV TA+ D YAK+G +  +++VF+R   ++ 
Sbjct: 455 LCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNE 514

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + WTA+I   A  G A ++++LF EM   + I P+ V F AVL AC+HSGLVDK    FN
Sbjct: 515 VSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFN 574

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   YG++P   H+ C+V +LSRA R+ EA EF+  MP +P    W ALL G     + 
Sbjct: 575 SMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNE 634

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL + V   L+E+  +N   Y++++N+Y+ AGRW +  +VR+ MK  GL K  G SW+E 
Sbjct: 635 ELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEI 694

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLG 448
              + SF ++D +  +S +IY ILE LLG
Sbjct: 695 RDRVHSFYSEDGAHSQSAEIYEILE-LLG 722



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 192/388 (49%), Gaps = 34/388 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSW + I+GY Q GF  E   LF ++L S V +P+ VT  SV++AC    D   GM 
Sbjct: 147 QNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEV-KPNKVTFTSVVRACANLGDFGLGMS 205

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V   ++++  + DL + N+LI +  + G +  AR + D M +KD VS++AI+  Y+    
Sbjct: 206 VLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDE 265

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F  M +    +W+A+I+   Q+   E  L L   M   G +PN    SSI S 
Sbjct: 266 LGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSA 325

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ G  IHG+  K  ++++++V++++ID Y K G     + +FD    ++++ W
Sbjct: 326 LASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSW 385

Query: 244 TAIISAYAAHGDASKAVSL-------------------------------FNEMLNNGIQ 272
            A++  Y+ +G   +A  L                               FNEM+  G  
Sbjct: 386 NAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEI 445

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+  TF+++L ACA +  +DK  ++   +  + GIQ        +  + +++  I  + +
Sbjct: 446 PNKSTFSSLLCACASTASLDKGKNLHGKIV-KLGIQCDTYVGTALTDMYAKSGDIESSKK 504

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVE 360
             ++MP K     W A++ G + SG  E
Sbjct: 505 VFNRMPKKNEVS-WTAMIQGLAESGLAE 531



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 194/391 (49%), Gaps = 24/391 (6%)

Query: 21  FYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV------------HNFV 68
           + + C +L + + N  ++R DG  + + L   G SS+    +++             + +
Sbjct: 20  YAQTCVSLLKNLTNQGLIR-DGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQI 78

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +     DL + N +I    + G+LD AR L DEM   +E+S++A+ISG+M +G V ++M
Sbjct: 79  SKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESM 138

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
             F+      + +W A ISG VQN      + L  ++  S V+PN VT +S+    ++  
Sbjct: 139 WYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLG 198

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +   G  + G  VK  Y+ ++ V+ ++I    + G +H A+ VFDR + + ++ WTAI+ 
Sbjct: 199 DFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILD 258

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            Y    +  +A  +F+EM     Q + V+++A+++    SG  +++  +F  M  Q G +
Sbjct: 259 LYVEMDELGEARRIFDEM----PQRNEVSWSAMIARYCQSGYPEESLRLFCRMI-QEGFK 313

Query: 309 PSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           P++  ++ ++  L+    +         V+K+  +    V  +L+      G+ + G+F+
Sbjct: 314 PNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFL 373

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
            D + E   +N  ++  M   YS  G  +EA
Sbjct: 374 FDTILE---KNMVSWNAMVGGYSLNGHMEEA 401



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 10/198 (5%)

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           A+  +  A T  S+    ++   ++ G  +H +  K       Y++  ++  Y       
Sbjct: 14  ATHFKTYAQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSA 73

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A ++   F G  L++   +ISA    G+  +A  LF+EM     Q + +++TA++S   
Sbjct: 74  EADQISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEM----PQTNEISWTALISGFM 129

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM--PVKPSAK 344
             G V ++   F     +   Q  V   A + G +     +     F+  +   VKP+  
Sbjct: 130 KYGRVRESMWYFE----RNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKV 185

Query: 345 VWGALLYGASISGDVELG 362
            + +++   +  GD  LG
Sbjct: 186 TFTSVVRACANLGDFGLG 203


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 265/469 (56%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K+++  WN +I GY+  G ++    L+ +ML+   LRPD  T+  VL+AC   S I  
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG-LRPDNFTLPFVLKACSALSAIGE 166

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +VI+S  + DL++  ALI MYAKCG +  A  + D++  +D V           
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAV----------- 215

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++   QN   +  + L REM A+GVRP   T+ ++
Sbjct: 216 --------------------LWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTV 255

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L  G+EIHG+  ++ +  N  V TA+ID YAK G +  A  +F+R + + +
Sbjct: 256 ISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRV 315

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W AII+ YA HG A  A+ LF++M     +PD +TF  VL+AC+   L+D+   ++N 
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P+V+HY CM+ +L    ++ EA + +  M VKP + VWGALL    I G+VE
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + L E+EP+++GNY+I+AN+Y+Q+G+W+  +++R+ M +  + K    SWIE  
Sbjct: 435 LAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVK 494

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F+A D S   S+ IY  L+RL GLM E GY      +  +VEE+
Sbjct: 495 NKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEED 543



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 125/246 (50%), Gaps = 2/246 (0%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + ++  Y V   +  A +LF  + +  L  WN +I G   N  H+  + L  +M   G+R
Sbjct: 86  TKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLR 145

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T+  +    S  S +  G+ IH Y +K+ ++R+++V  A+ID YAK G +  A RV
Sbjct: 146 PDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRV 205

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FD+   R  ++W ++++AYA +G   +++SL  EM  NG++P   T   V+S+ A    +
Sbjct: 206 FDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACL 265

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
               +I +    ++G Q + +    ++ + ++   +  A     ++  K     W A++ 
Sbjct: 266 PYGREI-HGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVS-WNAIIT 323

Query: 352 GASISG 357
           G ++ G
Sbjct: 324 GYAMHG 329



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 190 LKGGKEIHG--YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           L  GK++H   Y +   Y++++  AT ++  YA +  L  A+ +FD+   ++L +W  +I
Sbjct: 63  LNPGKQLHAQFYHLGIAYNQDL--ATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLI 120

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             YA +G    A+ L+++ML+ G++PD  T   VL AC+
Sbjct: 121 RGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACS 159


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/511 (31%), Positives = 272/511 (53%), Gaps = 56/511 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNSM++GY   G        F+EML     + D   ++S L AC     +  
Sbjct: 185 MPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGN-KADRFGMISALGACSIEHCLRS 243

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM- 119
           GME+H  VI S +++D+ +  +LI MY KCG +DYA  + + +  K+ V+++A+I G   
Sbjct: 244 GMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE 303

Query: 120 -----------------------------VHGFVEKAMDL-------------------- 130
                                        +HGF  + M L                    
Sbjct: 304 DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELK 363

Query: 131 -----FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                F  M    + +WN +++  VQN +++  L + + +    ++P+A+TI+S+    +
Sbjct: 364 LAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVA 423

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             ++   GK+IH Y +K     N +++ AI+  YAK G L  A+  FD    + ++ W  
Sbjct: 424 ELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNT 483

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I AYA HG    ++  F+EM   G +P+  TF ++L+AC+ SGL+D+ W  FN+M  +Y
Sbjct: 484 MIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEY 543

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           GI P +EHY CM+ +L R   + EA  F+ +MP+ P+A++WG+LL  +    DV L +  
Sbjct: 544 GIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELA 603

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
             H+  ++ +NTG Y++++N+Y++AGRW++ DR++  MKE GL K  G S ++ +G  +S
Sbjct: 604 ARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSES 663

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           F+ +D S   +  IY +L+ LL  + E+ Y+
Sbjct: 664 FINQDRSHAHTNLIYDVLDILLKKIGEDIYL 694



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 223/505 (44%), Gaps = 95/505 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+  D   WN +I GY+  G ++E    +  M     +R D  T   V++ACG+   ++ 
Sbjct: 84  MNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRM-ECEGIRSDNFTFPFVIKACGELLALMV 142

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  +I+    +D+++CN LI MY K G ++ A  + DEM  +D VS+++++SGY +
Sbjct: 143 GQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQI 202

Query: 121 HGFVEKAMDLFQVMKRPG--------------LSTWNAVISGL---VQNNRHEAVLDLVR 163
            G    ++  F+ M R G               S  + + SG+    Q  R E  LD++ 
Sbjct: 203 DGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMV 262

Query: 164 E--------------------------------------MQASGVRPNAVTISSIFSLFS 185
           +                                       +   V P+ +T+ ++    S
Sbjct: 263 QTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCS 322

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L  GK IHG+A++  +   + + TA++D Y K G L  A+ VF++   ++++ W  
Sbjct: 323 QSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNT 382

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HS-----G 289
           +++AY  +    +A+ +F  +LN  ++PD +T  +VL A A           HS     G
Sbjct: 383 MVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLG 442

Query: 290 LVDKAWDIFNAMSGQYG----IQPSVEHYACMV--GVLSRARRI---------SEATEFV 334
           L    + I NA+   Y     +Q + E +  MV   V+S    I           + +F 
Sbjct: 443 LGSNTF-ISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFF 501

Query: 335 SKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYS 388
           S+M     KP+   + +LL   SISG ++ G    + +   + I+P    +Y  M +L  
Sbjct: 502 SEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDP-GIEHYGCMLDLLG 560

Query: 389 QAGRWDEADRVREQMKESGLAKIPG 413
           + G  DEA    E+M     A+I G
Sbjct: 561 RNGNLDEAKCFIEEMPLVPTARIWG 585



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 51/348 (14%)

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           ++     ++  ++++ +  + G++  G +  A+D+F+ M       WN +I G   N   
Sbjct: 46  SKTSFKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLF 105

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
           +  +D    M+  G+R +  T   +         L  G+++HG  +K  +D ++YV   +
Sbjct: 106 QEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFL 165

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           ID Y K GF+  A++VFD    R L+ W +++S Y   GD   ++  F EML  G + D 
Sbjct: 166 IDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADR 225

Query: 276 VTFTAVLSACA-----------------------------------HSGLVDKAWDIFNA 300
               + L AC+                                     G VD A  +FN 
Sbjct: 226 FGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNR 285

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  +     ++  +  M+G +    ++    + ++ + + PS    GALL G SI G   
Sbjct: 286 IYSK-----NIVAWNAMIGGMQEDDKV--IPDVITMINLLPSCSQSGALLEGKSIHGFAI 338

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              F+   + E           + ++Y + G    A+ V  QM E  +
Sbjct: 339 RKMFLPYLVLETA---------LVDMYGKCGELKLAEHVFNQMNEKNM 377


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 260/457 (56%), Gaps = 33/457 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +K+D+VSW ++I G  + G   E    F EM +S V   D VTVVSVL A     D+ FG
Sbjct: 165 AKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGV-EVDEVTVVSVLCAAAMLRDVWFG 223

Query: 62  MEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             VH F +ES  +  D+++ +AL+ MY+KCG                             
Sbjct: 224 RWVHGFYVESGRVIWDVYVGSALVDMYSKCG----------------------------- 254

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             + + A+ +F  M    L +W A+I+G VQ NR++  L + +EM   G+ PN  T++S 
Sbjct: 255 --YCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSA 312

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L  G+ +H Y  +++   N  + TA++D Y+K G +  A  VF++   + +
Sbjct: 313 LTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDV 372

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTA+I+  A  GDA  +++LF++M+ + +QP+ VTF  VLSACAH GLVD+  ++F  
Sbjct: 373 YPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRL 432

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P+V+HY CMV +L RA R+ EA +F+  MP++P+  VWGAL  G  I    E
Sbjct: 433 MICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFE 492

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ + +HL +++P ++G YI++ANLYS+  +W+ A  VR  MK  G+ K P  SWIE +
Sbjct: 493 LGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVN 552

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL 457
           G +  F+A D S  +S  +Y++L  +   ++   Y L
Sbjct: 553 GVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYAL 589



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 200/441 (45%), Gaps = 83/441 (18%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGMEV 64
           I  WN+++  +S     +     +  + N  V+ PD  T   +L+A  +  ++  F    
Sbjct: 69  IFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVI-PDRHTFPLLLKAFSKLRNENPFQFYA 127

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++  +  D ++ N+L+  +A CG +D +R L  E + KD VS++A+I+G + +G  
Sbjct: 128 H--IVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRA 185

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A++ F                                EM++SGV  + VT+ S+    
Sbjct: 186 VEALECFV-------------------------------EMRSSGVEVDEVTVVSVLCAA 214

Query: 185 SHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           +   ++  G+ +HG+ V++ R   ++YV +A++D Y+K G+   A +VF+    R+L+ W
Sbjct: 215 AMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSW 274

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMS 302
            A+I+ Y       +A+ +F EM+  GI+P+  T T+ L+ACA  G +D+  W       
Sbjct: 275 GALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDR 334

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD---- 358
            + G+   +     +V + S+   + EA     K+P K     W A++ G ++ GD    
Sbjct: 335 SKLGLNSKLG--TALVDMYSKCGCVDEALLVFEKLPAK-DVYPWTAMINGLAMRGDALSS 391

Query: 359 -----------------------------------VELGKF-VCDHLFEIEPENTGNYII 382
                                              +EL +  +CD  + +EP N  +Y  
Sbjct: 392 LNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICD--YRLEP-NVDHYGC 448

Query: 383 MANLYSQAGRWDEADRVREQM 403
           M +L  +AGR +EA +  E M
Sbjct: 449 MVDLLGRAGRLEEAIKFIESM 469



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 123/277 (44%), Gaps = 38/277 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSW ++IAGY Q   Y+E   +F+EM+   +  P+  TV S L AC Q   +  
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGI-EPNQSTVTSALTACAQLGSLDQ 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V  S + ++  +  AL+ MY+KCG +D A  + +++  KD   ++A+I+G  +
Sbjct: 325 GRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAM 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    +++LF  M R                               S V+PN VT   +
Sbjct: 385 RGDALSSLNLFSQMIR-------------------------------SRVQPNGVTFLGV 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +H   +  G E+    + + R + N+     ++D   + G L  A +  +      
Sbjct: 414 LSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEP 473

Query: 240 LI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
              +W A+ S    H    KA  L   + N+ I+  P
Sbjct: 474 TPGVWGALFSGCMIH----KAFELGEHIGNHLIKLQP 506



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 128/295 (43%), Gaps = 46/295 (15%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF------------VEKAM 128
           ++++  + KCG+ D+           ++ +   I SG   H F            +   +
Sbjct: 9   HSILCCFHKCGTFDHL----------NQTTSILITSGLAHHTFFLSDLLRSATKDLGYTL 58

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  +  P +  WN ++     +++ + VL     ++  GV P+  T   +   FS   
Sbjct: 59  LLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           N +   + + + VK   D + +V  +++  +A  G++  ++R+F     + ++ WTA+I+
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDI 297
               +G A +A+  F EM ++G++ D VT  +VL A A           H   V+    I
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           ++   G           + +V + S+     +A +  ++MP +     WGAL+ G
Sbjct: 238 WDVYVG-----------SALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAG 280


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 263/455 (57%), Gaps = 5/455 (1%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSDIVFGM 62
           IVSW + IA Y + G   +  + F +M  + +  P+ +T +++L AC      S I FG 
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAI-EPNHITFITLLSACAHYPSRSSISFGT 114

Query: 63  EVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +H  V +  + + D+ +  ALI MYAKCG ++ AR   D+M  ++ VS++ +I GYM +
Sbjct: 115 AIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRN 174

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  E A+ +F  +      +W A+I G V+ + HE  L+  REMQ SGV P+ VT+ ++ 
Sbjct: 175 GKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVI 234

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  ++   L  G  +H   +   +  N+ V+ ++ID Y++ G +  A++VFDR   R+L+
Sbjct: 235 AACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLV 294

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W +II  +A +G A +A+S FN M   G +PD V++T  L AC+H+GL+ +   IF  M
Sbjct: 295 SWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHM 354

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
                I P +EHY C+V + SRA R+ EA   +  MP+KP+  + G+LL      G++ L
Sbjct: 355 KRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGL 414

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            + V ++L E++     NY++++N+Y+  G+WD A++VR +MKE G+ K PG S IE   
Sbjct: 415 AENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDS 474

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FV+ D S ++ + IY  LE L   ++  GY+
Sbjct: 475 SIHKFVSGDKSHEEKDHIYAALEFLSFELQLCGYI 509



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 134/313 (42%), Gaps = 80/313 (25%)

Query: 1   MSKRDIVSWNSMIAGYSQGG-------------------------------FYEECKALF 29
           M  R++VSWN+MI GY + G                               ++EE    F
Sbjct: 156 MGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECF 215

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           REM  S V  PD VTV++V+ AC     +  G+ VH  V+    + ++ + N+LI MY++
Sbjct: 216 REMQLSGV-APDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSR 274

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD-------------------- 129
           CG +D AR + D M  +  VS+++II G+ V+G  ++A+                     
Sbjct: 275 CGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGA 334

Query: 130 ---------------LFQVMKR-----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
                          +F+ MKR     P +  +  ++    +  R E  L++++ M    
Sbjct: 335 LMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMP--- 391

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHG 227
           ++PN V + S+ +      N+   + +  Y ++  +  D N  + + I   YA  G   G
Sbjct: 392 MKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNI---YAAVGKWDG 448

Query: 228 AQRVFDRFKGRSL 240
           A +V  R K R +
Sbjct: 449 ANKVRRRMKERGI 461


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 266/472 (56%), Gaps = 30/472 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R I  WN+MI GY+Q  + EE   LF EM  S  L  +  T+  V+ AC +S     
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H FV++  +  D ++ NAL+ MY++ G +D A+ +  +M D+D V+++ II+GY+ 
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV--RPNAVTIS 178
               E A+ +   M+                      +L+     +AS V  +PN++T+ 
Sbjct: 480 SERHEDALLMLHKMQ----------------------ILERKASERASRVSLKPNSITLM 517

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +I    +  S L  GKEIH YA+KN    ++ V +A++D YAK G L  +++VFD+   R
Sbjct: 518 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR 577

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++I W  I+ AY  HG++  A+ +   M+  G++P+ VTF +V +AC+HSG+V++   IF
Sbjct: 578 NVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIF 637

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASISG 357
             M   YG++PS +HYAC+V +L RA R+ EA + ++ +P     A  W +LL    I  
Sbjct: 638 YNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHN 697

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++E+G+    +L ++EP    +Y+++AN+YS AG W +A  VR  MK  G+ K PG SWI
Sbjct: 698 NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWI 757

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    +  FVA D+S  +SE++   LE L   MR+EGY+     +L  VEE+
Sbjct: 758 EHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEED 809



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 141/298 (47%), Gaps = 38/298 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSD 57
           +S+R+ VSWNS+I+       +E     FR ML+  V  P   T+VSV  AC        
Sbjct: 155 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV-EPSSFTLVSVALACSNFPMPEG 213

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           ++ G +VH + +    +++ +I N L+ MY K G L  ++ LL     +D          
Sbjct: 214 LLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRD---------- 262

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                L TWN V+S L QN +    L+ +REM   GV P+  TI
Sbjct: 263 ---------------------LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTI 301

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           SS+    SH   L+ GKE+H YA+KN   D N +V +A++D Y     +    RVFD   
Sbjct: 302 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMF 361

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDK 293
            R + +W A+I+ YA +    +A+ LF EM  + G+  +  T   V+ AC  SG   K
Sbjct: 362 DRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 187/442 (42%), Gaps = 82/442 (18%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+WN++++   Q   + E     REM+   V  PDG T+ SVL AC     +  G E
Sbjct: 261 RDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGV-EPDGFTISSVLPACSHLEMLRTGKE 319

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H + +++  +  + ++ +AL+ MY  C  +     + D M D+                
Sbjct: 320 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRK--------------- 364

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIF 181
                           +  WNA+I+G  QN   E  L L  EM+ S G+  N+ T++ + 
Sbjct: 365 ----------------IGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVV 408

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                       + IHG+ VK   DR+ +V  A++D Y++ G +  A+R+F + + R L+
Sbjct: 409 PACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLV 468

Query: 242 IWTAIISAYAAHGDASKAVSLFNEML-----------NNGIQPDPVTFTAVLSACAHSGL 290
            W  II+ Y        A+ + ++M               ++P+ +T   +L +CA    
Sbjct: 469 TWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSA 528

Query: 291 VDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI------------------ 327
           + K     A+ I N ++    +  ++       G L  +R++                  
Sbjct: 529 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMA 588

Query: 328 -------SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEP 374
                   +A + +  M    VKP+   + ++    S SG V  G  +  ++   + +EP
Sbjct: 589 YGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEP 648

Query: 375 ENTGNYIIMANLYSQAGRWDEA 396
            ++ +Y  + +L  +AGR  EA
Sbjct: 649 -SSDHYACVVDLLGRAGRVKEA 669



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 36/254 (14%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYA 96
           ++PD     ++L+A     D+  G ++H  V +    +D + + N L+ +Y KCG     
Sbjct: 89  IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 148

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             + D +S++++VS                               WN++IS L    + E
Sbjct: 149 YKVFDRISERNQVS-------------------------------WNSLISSLCSFEKWE 177

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG---GKEIHGYAVKNRYDRNIYVAT 213
             L+  R M    V P++ T+ S+    S+F   +G   GK++H Y ++ + + N ++  
Sbjct: 178 MALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLR-KGELNSFIIN 236

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
            ++  Y K G L  ++ +   F+GR L+ W  ++S+   +    +A+    EM+  G++P
Sbjct: 237 TLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296

Query: 274 DPVTFTAVLSACAH 287
           D  T ++VL AC+H
Sbjct: 297 DGFTISSVLPACSH 310



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query: 142 WNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           W  ++   V++N   EAVL  + +M   G++P+     ++    +   ++  GK+IH + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYI-DMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 201 VKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            K  Y   ++ VA  +++ Y K G      +VFDR   R+ + W ++IS+  +      A
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           +  F  ML+  ++P   T  +V  AC++
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSN 207


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 269/474 (56%), Gaps = 24/474 (5%)

Query: 3    KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            K DIV+WN +++G+   G+ EE   + + M      +P+  ++ SVLQA  +   +  G 
Sbjct: 873  KPDIVTWNCLLSGHFLHGYKEEVLNILQRM-QGEGFKPNSSSMTSVLQAISELGFLNMGK 931

Query: 63   EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            E H +V+ +    D+++  +LI MY K  SL  A+A+ D M +++  ++++++SGY   G
Sbjct: 932  ETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKG 991

Query: 123  FVEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              E A+ L   M++    P L TWN +ISG        A+    R+       PN+ +I+
Sbjct: 992  MFEDALRLLNQMEKEGIKPDLVTWNGMISGY-------AMWGCARK----AFMPNSASIT 1040

Query: 179  SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
             +    +  S L+ GKEIH  +++N +  +++VATA+ID Y+K+  L  A +VF R + +
Sbjct: 1041 CLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNK 1100

Query: 239  SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +L  W  +I  +A  G   +A+S+FNEM   G+ PD +TFTA+LSAC +SGL+ + W  F
Sbjct: 1101 TLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYF 1160

Query: 299  NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            ++M   Y I P +EHY CMV +L RA  + EA + +  MP+KP A +WGALL    I  +
Sbjct: 1161 DSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKN 1220

Query: 359  VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +   +    +LF++EP N+ NYI+M NLYS   RW++ D +RE M  +G+      SWI+
Sbjct: 1221 LXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQ 1280

Query: 419  CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEE 464
             +  +  F + +     + +IY  L +L+  M++ GYV         +DEVE++
Sbjct: 1281 INQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQ 1334



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 143/308 (46%), Gaps = 34/308 (11%)

Query: 4   RDIVSWNSMIAGY-SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R+ + WNS +  + S  G       +F+E+    V+    V  V+ L+ C +  DI  GM
Sbjct: 636 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVA-LKTCTRVMDIWLGM 694

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H  +I+    +D+++  AL+  Y +C  L                             
Sbjct: 695 EIHGCLIKRGFDLDVYLRCALMNFYGRCWGL----------------------------- 725

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             EKA  +F  M  P    WN  I   +Q+ + +  ++L R+MQ S ++    TI  +  
Sbjct: 726 --EKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                  L   K+IHGY  +   D ++ +   +I  Y+K G L  A+RVFD  + R+   
Sbjct: 784 ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 843

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++IS+YAA G  + A SLF E+ ++ ++PD VT+  +LS     G  ++  +I   M 
Sbjct: 844 WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 303 GQYGIQPS 310
           G+ G +P+
Sbjct: 904 GE-GFKPN 910



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 120/299 (40%), Gaps = 62/299 (20%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVT---------------- 44
            M  R+I +WNS+++GYS  G +E+   L  +M    + +PD VT                
Sbjct: 972  MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGI-KPDLVTWNGMISGYAMWGCARK 1030

Query: 45   --------VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96
                    +  +L+AC   S +  G E+H   I +    D+++  ALI MY+K  SL  A
Sbjct: 1031 AFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNA 1090

Query: 97   RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
              +   + +K   S++ +I G+ + G  ++A+ +F                         
Sbjct: 1091 HKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFN------------------------ 1126

Query: 157  AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL-KGGKEIHGYAVKNRYDRNIYVATAI 215
                   EMQ  GV P+A+T +++ S   +   + +G K         R    +     +
Sbjct: 1127 -------EMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCM 1179

Query: 216  IDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD----ASKAVSLFNEMLNN 269
            +D   + G+L  A  +      +    IW A++ +   H +     + A +LF    NN
Sbjct: 1180 VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNN 1238


>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
          Length = 865

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/499 (34%), Positives = 285/499 (57%), Gaps = 49/499 (9%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + +WN++++G ++ G   E   + R ML   +  PD  ++ S+L++      +  GME H
Sbjct: 277 LATWNAVLSGCARHGRDREAFGVVRSMLERGI-PPDSSSMSSLLKSVASLGLLAHGMEAH 335

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            F +   ++ D++   A + MYAKCG L+YA+ + D +  ++  +++++++GY   G  +
Sbjct: 336 CFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFD 395

Query: 126 KAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
            A+DL + MKR    P ++TWN +ISG   N R    + L+R+M+A G+ PN V+ +S+ 
Sbjct: 396 HALDLVEEMKRNRLDPDITTWNGLISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSWTSLI 455

Query: 182 SLFSH---------FSN--------------------------LKGGKEIHGYAVKNR-Y 205
           S   H         F N                          L  GKE+H +A++ R Y
Sbjct: 456 SGSCHNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLAKGKELHCFALRRRAY 515

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFN 264
           DR++ VATA+ID Y+K+G L  A R+F+R +  ++L+ W A+++  AAHG   +A++LF+
Sbjct: 516 DRDMVVATALIDMYSKSGNLASATRIFERIQEEKNLVSWNAMLTGLAAHGQGREAIALFD 575

Query: 265 EMLNN------GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           +M +       G++PD +TFTA+L+AC    L+ + WD F+AM  +YG+ P+VE+YACMV
Sbjct: 576 DMCSASAGAGAGLKPDSITFTALLTACRSMELITEGWDYFDAMESRYGVTPTVENYACMV 635

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
            +L+R   + EAT+F+++ P K +A +WGALL G  + G++ L +     LF++EP N+ 
Sbjct: 636 DLLARCGYLDEATDFINRSPFKSAASLWGALLTGCVVHGNLALAEAAARKLFKLEPYNSA 695

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF-VAKDTSGDKSE 437
           NY+ M +LY +   +DEA+ ++  MK   L   PG SWI+    +  F V        + 
Sbjct: 696 NYLQMVSLYEREQMFDEAESLKYAMKARALNTRPGWSWIQIEQSIHVFQVEGKPPHPDTA 755

Query: 438 QIYLILERLLGLMREEGYV 456
           +IY  L RL+  +R+ GYV
Sbjct: 756 EIYQQLVRLVLQIRKAGYV 774



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 199/416 (47%), Gaps = 20/416 (4%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D + WN  +A  ++   + +  A F EM    V  PDG      L ACG++     G  V
Sbjct: 137 DTMLWNKRVAMLAEAEEWGDAIAAFAEMRARGVA-PDGYACARALHACGRAGAPREGQAV 195

Query: 65  HNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           H    ++ H+     +   L GMYA+   +  AR +L E  D   V+++ +++     G 
Sbjct: 196 HAHAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGL 254

Query: 124 VEKAMDLFQVMKR-------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           V+ A+DL + M R       P L+TWNAV+SG  ++ R      +VR M   G+ P++ +
Sbjct: 255 VDDALDLAERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSS 314

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +SS+    +    L  G E H + +++R + ++Y  TA +D YAK G L  AQ+VFD  +
Sbjct: 315 MSSLLKSVASLGLLAHGMEAHCFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLE 374

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R++  W ++++ Y+  G    A+ L  EM  N + PD  T+  ++S  + +G   +A  
Sbjct: 375 LRNITTWNSLVAGYSNAGQFDHALDLVEEMKRNRLDPDITTWNGLISGYSMNGRSSQAVL 434

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGA 353
           +   M    G+ P+V  +  ++          ++  F ++M    V+PS      LL   
Sbjct: 435 LLRQMKA-IGLTPNVVSWTSLISGSCHNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRAC 493

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMA----NLYSQAGRWDEADRVREQMKE 405
           +    +  GK +  H F +        +++A    ++YS++G    A R+ E+++E
Sbjct: 494 AGLALLAKGKEL--HCFALRRRAYDRDMVVATALIDMYSKSGNLASATRIFERIQE 547



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 9/128 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-----LRPDGVTVVSVLQACGQSSD 57
           ++++VSWN+M+ G +  G   E  ALF +M ++       L+PD +T  ++L AC     
Sbjct: 548 EKNLVSWNAMLTGLAAHGQGREAIALFDDMCSASAGAGAGLKPDSITFTALLTACRSMEL 607

Query: 58  IVFGMEVHNFVIESHIKMDLWICN--ALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAI 114
           I  G +  +  +ES   +   + N   ++ + A+CG LD A   ++    K   S + A+
Sbjct: 608 ITEGWDYFD-AMESRYGVTPTVENYACMVDLLARCGYLDEATDFINRSPFKSAASLWGAL 666

Query: 115 ISGYMVHG 122
           ++G +VHG
Sbjct: 667 LTGCVVHG 674


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 261/469 (55%), Gaps = 7/469 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ +SW  MIAGY+Q G  EE   L  + L+   + P   ++ S   AC     +  
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLL-QALHRNGMLPSLSSLTSSFLACSHIGALET 436

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +++  + + ++CNALI MY KC +++Y R + + M  KD VS+++ I+  + 
Sbjct: 437 GRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQ 496

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +  +E A  +F  M    + +W  +IS   Q  R +  ++  + M     +PN+  ++ +
Sbjct: 497 NNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTIL 556

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+     + K G++IH  A+K+  D  + VA A++  Y K G    + +VFD  + R +
Sbjct: 557 LSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDI 615

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W   I+  A HG   +A+ ++  M + G+ P+ VTF  +L+AC+H+GLVD+ W  F +
Sbjct: 616 FTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKS 675

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG+ P +EHYACMV +L R   +  A +F+  MP++P   +W ALL    I  + E
Sbjct: 676 MSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAE 735

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+   + LF  EP N GNY++++N+YS  G W E   +R+ MK+ G++K PG SW++  
Sbjct: 736 IGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIR 795

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + SFV  D   +K E+I   L+ L  L+R  GYV     +L +++EE
Sbjct: 796 NKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEE 844



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 164/364 (45%), Gaps = 68/364 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA--------- 51
           M +R++V+W  MI+GY +   + +   +FR M++     PD     SVL A         
Sbjct: 183 MPQRNLVTWTVMISGYVRIEQHGKGWDIFR-MMHHEGASPDQSNFASVLSAVTGLQDLGV 241

Query: 52  ----------CGQSSDIVFGMEVHNFVIESHIKMDLWI---------------------- 79
                      G  SD+V G  + N        +D+ I                      
Sbjct: 242 LEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALS 301

Query: 80  ----CNALIGMY------------------AKCGSLDYARALLDEMSDKDEVSYSAIISG 117
                +A I +Y                  A+CG +  AR L +++ D   VS++A+I+G
Sbjct: 302 HGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITG 361

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           YM +G V++A +LF  M      +W  +I+G  QN R E  LDL++ +  +G+ P+  ++
Sbjct: 362 YMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSL 421

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +S F   SH   L+ G+++H  AVK     N YV  A+I  Y K   +   ++VF+R + 
Sbjct: 422 TSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRV 481

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  + W + I+A   +     A  +F+ ML+     D V++T ++SA A +   D+A + 
Sbjct: 482 KDTVSWNSFIAALVQNNMLEDARHIFDNMLSR----DVVSWTTIISAYAQAERGDEAVEF 537

Query: 298 FNAM 301
           F  M
Sbjct: 538 FKTM 541



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 166/368 (45%), Gaps = 34/368 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--- 57
           M  RDI++WNSMI+ Y   G  E+ + LF  +    V       ++S     G+  D   
Sbjct: 59  MPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNV--RTATILLSGYARLGRVLDARR 116

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +  GM   N V         W  NA++  Y + G +  AR L D M  +D  S++++++G
Sbjct: 117 VFDGMPERNTVA--------W--NAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTG 166

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y     +  A +LF+ M +  L TW  +ISG V+  +H    D+ R M   G  P+    
Sbjct: 167 YCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNF 226

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGFLHGAQRVFDRFK 236
           +S+ S  +   +L   + +    +K  ++ ++ + T+I++ Y +    L  A + FD   
Sbjct: 227 ASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMV 286

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVD 292
            R+   W+ +I+A +  G    A++++          DPV    + TA+L+  A  G + 
Sbjct: 287 ERNEYTWSTMIAALSHGGRIDAAIAVYGR--------DPVKSIPSQTALLTGLARCGRIT 338

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +A  +F  +       P V  +  M+    +   + EA E   +MP + +   W  ++ G
Sbjct: 339 EARILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTIS-WAGMIAG 392

Query: 353 ASISGDVE 360
            + +G  E
Sbjct: 393 YAQNGRSE 400



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 146/297 (49%), Gaps = 25/297 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALF-REMLNSPVLRPDGVTVVSVLQACGQSSD-- 57
           M +R+  +W++MIA  S GG  +   A++ R+ + S    P    +++ L  CG+ ++  
Sbjct: 285 MVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI---PSQTALLTGLARCGRITEAR 341

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           I+F       V+        W  NA+I  Y + G +D A+ L D M  ++ +S++ +I+G
Sbjct: 342 ILFEQIPDPIVVS-------W--NAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA----SGVRPN 173
           Y  +G  E+A+DL Q + R G+    + ++       H   L+  R++ +    +G + N
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFN 452

Query: 174 AVTISSIFSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           +   +++ S++    N++  +++ +   VK+    N ++A  +     +   L  A+ +F
Sbjct: 453 SYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALV-----QNNMLEDARHIF 507

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           D    R ++ WT IISAYA      +AV  F  ML+   +P+    T +LS C   G
Sbjct: 508 DNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLG 564



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 162/411 (39%), Gaps = 65/411 (15%)

Query: 72  HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131
           H  +D    +A I   A+ G L  AR + D M  +D ++++++IS Y   G +E A  LF
Sbjct: 28  HRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF 87

Query: 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
             +    + T   ++SG  +  R   VLD  R       R N V  +++ S +    ++ 
Sbjct: 88  DAISGGNVRTATILLSGYARLGR---VLDARRVFDGMPER-NTVAWNAMVSCYVQNGDIT 143

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
             + +          R++    +++  Y  +  +  A  +F +   R+L+ WT +IS Y 
Sbjct: 144 MARRL----FDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYV 199

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAMSGQYGIQPS 310
                 K   +F  M + G  PD   F +VLSA   +GL D    ++   +  + G +  
Sbjct: 200 RIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAV--TGLQDLGVLEVLRPLVLKTGFESD 257

Query: 311 V--------------------------------EHYACMVGVLSRARRISEATEFVSKMP 338
           V                                  ++ M+  LS   RI  A     + P
Sbjct: 258 VVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDP 317

Query: 339 VK--PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-TGNYIIMANLYSQAGRWDE 395
           VK  PS     ALL G +  G +   +     LFE  P+    ++  M   Y Q G  DE
Sbjct: 318 VKSIPSQT---ALLTGLARCGRITEARI----LFEQIPDPIVVSWNAMITGYMQNGMVDE 370

Query: 396 ADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           A  + ++M        P R+ I  +G     +A      +SE+   +L+ L
Sbjct: 371 AKELFDRM--------PFRNTISWAG----MIAGYAQNGRSEEALDLLQAL 409


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 268/458 (58%), Gaps = 8/458 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+RD++SWNSM+    + G+      L R ML+     PD VT++SV+  C        
Sbjct: 400 ISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGT-TPDSVTILSVVHFCVNVLKEDK 458

Query: 61  GMEVHNFVIE-----SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAI 114
             E H++ I      S   ++  I NA++  YAKCG+++YA  +   +S+ ++ V++ AI
Sbjct: 459 VKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAI 518

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           ISGY+  G +++A   F  M    LS WN ++    +N+     L L  E+QA G++P+A
Sbjct: 519 ISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDA 578

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VTI S+    +  ++++  K+ HGYA+++ +  ++++  A+ D YAK G +  A ++F  
Sbjct: 579 VTIMSLLPACAEMASVQLIKQCHGYAIRSCFG-DLHLDGALQDVYAKCGSIGYAFKLFQL 637

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              + LII+TA+I  YA HG   +A+  F  M+  GI+PD V  T VLSAC+H+GLVD+ 
Sbjct: 638 IPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEG 697

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            +IF ++   +G++ ++E Y+C+V +L+R  RI +A   V+ MP++ +A +WG LL    
Sbjct: 698 LNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIWGTLLGACR 757

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
              +VELG+FV D LF+IE EN GNY++++NLY+   RWD    +R+ M+   L K  G 
Sbjct: 758 THHEVELGRFVADRLFKIEAENIGNYVVLSNLYAADARWDGVMEIRKLMRTRDLKKPAGC 817

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           SWIE       FVA DTS      IY IL  L G ++E
Sbjct: 818 SWIEVERRKNVFVAGDTSHPHRIDIYRILSTLNGQIKE 855



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 148/294 (50%), Gaps = 38/294 (12%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + RD + WN +++GY+    Y+ E   LFREM  +   +P  VT   VL  C +  D+  
Sbjct: 89  NDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYM 148

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGYM 119
           G  V+ + I+S +       NAL+ MYAKCG +   A A  D + +KD VS         
Sbjct: 149 GRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVS--------- 199

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 WNA+ISG  +NN  E    L   M    ++PN  T+++
Sbjct: 200 ----------------------WNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLAN 237

Query: 180 IFSLFSHFSNLKG---GKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           I  + + F        GKEIHGY ++ N    +++V  A++  Y + G +  A+ +F R 
Sbjct: 238 ILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRM 297

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHS 288
           + R L+ W AII+ YA++G+ SKA+ LF+E+L  + I+PD VT   ++ ACA S
Sbjct: 298 ELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQS 351



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 69/324 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++IAGY+  G + +   LF E+L   ++ PD VT++ ++ AC QS ++  
Sbjct: 297 MELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHV 356

Query: 61  GMEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H +V+   +   D  + NAL+  YAKC                             
Sbjct: 357 GKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDD--------------------------- 389

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               +E A + F ++ R  L +WN+++  LV++  +   L+L+R M + G  P++VTI S
Sbjct: 390 ----IEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILS 445

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR-----YDRNIYVATAIIDTYAKTGFLHGAQRV--- 231
           +     +       KE H Y++++R     +D    +  AI+D YAK G +  A +V   
Sbjct: 446 VVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQS 505

Query: 232 -----------------------------FDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
                                        F+R     L +W  ++  YA +  +S+A+ L
Sbjct: 506 LSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGL 565

Query: 263 FNEMLNNGIQPDPVTFTAVLSACA 286
           F+E+  +GI+PD VT  ++L ACA
Sbjct: 566 FHELQAHGIKPDAVTIMSLLPACA 589



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 157/323 (48%), Gaps = 44/323 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV- 59
           + ++D+VSWN++I+G+++    E+   LF  ML   + +P+  T+ ++L  C    + + 
Sbjct: 192 IDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQI-KPNYTTLANILPVCASFDEYIA 250

Query: 60  --FGMEVHNFVI-ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
             FG E+H +V+  + +  D+++ NAL+  Y + G ++ A  L   M  +D VS++AII+
Sbjct: 251 YWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIA 310

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV-LDLVREMQASGVRPNAV 175
           GY  +G   KA++LF                       HE + LD+        + P++V
Sbjct: 311 GYASNGEWSKALELF-----------------------HELLTLDM--------IEPDSV 339

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           T+  I    +   NL  GK IHGY +++     +  V  A++  YAK   + GA   F  
Sbjct: 340 TLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFM 399

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R LI W +++ A    G  +  + L   ML+ G  PD VT  +V+  C +    DK 
Sbjct: 400 ISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKV 459

Query: 295 WDIFN------AMSGQYGIQPSV 311
            +  +       ++ ++ ++P++
Sbjct: 460 KEAHSYSIRHRLLASKFDVEPTI 482



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 158/360 (43%), Gaps = 59/360 (16%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN+MI+         +C   FR+         D   V S+L++C   S I +G  +H  
Sbjct: 8   AWNTMIS---------DCNGDFRQ---------DYQAVASILKSCAGLSAIKWGRALHGS 49

Query: 68  VIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEM---SDKDEVSYSAIISGYMVHGF 123
           ++   H+     +  AL+ MYAKCG+LD ++ L  E+   +D+D + ++ ++SGY     
Sbjct: 50  IVRIGHVSCHA-VSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGY----- 103

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISSIFS 182
                         G   ++A              L L REM  A+  +P++VT + +  
Sbjct: 104 -------------AGSRVYDA------------ETLRLFREMHGANYPKPSSVTAAIVLP 138

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFKGRSLI 241
           + +   ++  G+ ++ YA+K+  D +     A++  YAK G +   A   FD    + ++
Sbjct: 139 VCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVV 198

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW---DIF 298
            W AIIS +A +     A  LF+ ML   I+P+  T   +L  CA        W   +I 
Sbjct: 199 SWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIH 258

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             +     +   V  +  +V    R  R+ EA     +M ++     W A++ G + +G+
Sbjct: 259 GYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVS-WNAIIAGYASNGE 317



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 24/162 (14%)

Query: 134 MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
           M  P L  WN +IS        +   D  ++ QA         ++SI    +  S +K G
Sbjct: 1   MVGPYLKAWNTMIS--------DCNGDFRQDYQA---------VASILKSCAGLSAIKWG 43

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF---KGRSLIIWTAIISAY 250
           + +HG  V+  +     V+ A+++ YAK G L  ++++F        R  I W  ++S Y
Sbjct: 44  RALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGY 103

Query: 251 AAHG--DASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSG 289
           A     DA + + LF EM   N  +P  VT   VL  CA  G
Sbjct: 104 AGSRVYDA-ETLRLFREMHGANYPKPSSVTAAIVLPVCARLG 144


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 256/455 (56%), Gaps = 33/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+++++VSW +MI  Y++ G +++   L +EM+   + +PD   V SVL        +  
Sbjct: 572 MAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGI-KPDVFAVTSVLHGFAGDESLKQ 630

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH + I + ++  L + NAL+ MY  C +++ AR + D +++KD +S          
Sbjct: 631 GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIIS---------- 680

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I G  +NN       L  +M     +PN VT++ I
Sbjct: 681 ---------------------WNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCI 718

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+L+ G+EIH YA++  +  + Y + A++D Y K G L  A+ +FDR   ++L
Sbjct: 719 LPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNL 778

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT +I+ Y  HG    AV+LF +M  +G++PD  +F+A+L AC HSGL  + W  FNA
Sbjct: 779 ISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNA 838

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P ++HY C+V +LS    + EA EF+  MP++P + +W +LL+G  I  DV+
Sbjct: 839 MRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVK 898

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V D +F++EPENTG Y+++AN+Y++A RW+   +++ ++   GL +  G SWIE  
Sbjct: 899 LAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVR 958

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G +  F+A + +  +  +I   L+ +   MREEG+
Sbjct: 959 GKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGH 993



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 151/298 (50%), Gaps = 35/298 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +D +SWNS+I+G +  G   E   LF  M +    L  D  T++SVL AC +S    
Sbjct: 471 MPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL--DSTTLLSVLPACARSHYWF 528

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  VH + +++ +  +  + NAL+ MY+ C        +   M+ K+ VS++A+I+ Y 
Sbjct: 529 VGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYT 588

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G  +K                   ++GL+Q    E VLD        G++P+   ++S
Sbjct: 589 RAGLFDK-------------------VAGLLQ----EMVLD--------GIKPDVFAVTS 617

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +   F+   +LK GK +HGYA++N  ++ + VA A+++ Y     +  A+ VFD    + 
Sbjct: 618 VLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKD 677

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +I W  +I  Y+ +  A+++ SLF++ML    +P+ VT T +L A A    +++  +I
Sbjct: 678 IISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREI 734



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 129/297 (43%), Gaps = 40/297 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD +SWNS I+GY   G+++    LF +M  S       VTV+SVL AC +    + 
Sbjct: 259 MHARDAISWNSTISGYFSNGWHDRAVDLFSKMW-SEGTEISSVTVLSVLPACAELGFELV 317

Query: 61  GMEVHNFVIESHIKMDL---------WICNALIGMYAKCGSLDYARALLDEMSDKDEVSY 111
           G  VH + ++S +  DL          + + L+ MY KCG +  AR + D M  K  V  
Sbjct: 318 GKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVH- 376

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
                                         WN ++ G  +    E  L L  +M   G+ 
Sbjct: 377 -----------------------------VWNLIMGGYAKAAEFEESLLLFEQMHELGIT 407

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+   +S +    +  S  + G   HGY VK  +     V  A+I  YAK+  +  A  V
Sbjct: 408 PDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLV 467

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           FDR   +  I W ++IS   ++G  S+A+ LF  M   G + D  T  +VL ACA S
Sbjct: 468 FDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 54/368 (14%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  W S+++ Y++ G ++E  +LFR+M    V  PD   V  VL+       I  G  +
Sbjct: 162 DVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGV-SPDAHAVSCVLKCIASLGSITEGEVI 220

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  + +  +     + NALI +Y++CG ++ A  + D M  +D +S+++ ISGY  +G+ 
Sbjct: 221 HGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWH 280

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A+DLF                                +M + G   ++VT+ S+    
Sbjct: 281 DRAVDLFS-------------------------------KMWSEGTEISSVTVLSVLPAC 309

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID---------TYAKTGFLHGAQRVFDRF 235
           +       GK +HGY++K+    ++    + ID          Y K G +  A+RVFD  
Sbjct: 310 AELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAM 369

Query: 236 KGRSLI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS-----ACAHSG 289
             +  + +W  I+  YA   +  +++ LF +M   GI PD    + +L      +CA  G
Sbjct: 370 PSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDG 429

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           LV   + +       +G Q +V +   ++   +++  I  A     +MP + +   W ++
Sbjct: 430 LVAHGYLV----KLGFGTQCAVCN--ALISFYAKSNMIDNAVLVFDRMPHQDTIS-WNSV 482

Query: 350 LYGASISG 357
           + G + +G
Sbjct: 483 ISGCTSNG 490



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 32/281 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           SK ++  WN ++ GY++   +EE   LF +M +   + PD   +  +L+     S    G
Sbjct: 371 SKGNVHVWNLIMGGYAKAAEFEESLLLFEQM-HELGITPDEHALSCLLKCITCLSCARDG 429

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           +  H ++++        +CNALI  YAK   +D A  + D M  +D +S           
Sbjct: 430 LVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTIS----------- 478

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WN+VISG   N  +   ++L   M   G   ++ T+ S+ 
Sbjct: 479 --------------------WNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVL 518

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +       G+ +HGY+VK        +A A++D Y+     H   ++F     ++++
Sbjct: 519 PACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVV 578

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
            WTA+I++Y   G   K   L  EM+ +GI+PD    T+VL
Sbjct: 579 SWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 57/308 (18%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           L+  Y KCG L  AR + DEM  +  D   +++++S Y   G  ++ + LF         
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLF--------- 186

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
                                 R+MQ  GV P+A  +S +    +   ++  G+ IHG  
Sbjct: 187 ----------------------RQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLL 224

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
            K        VA A+I  Y++ G +  A +VFD    R  I W + IS Y ++G   +AV
Sbjct: 225 EKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAV 284

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSG--LVDKA-----------WDIFNAMSG---Q 304
            LF++M + G +   VT  +VL ACA  G  LV K            WD+ +  SG    
Sbjct: 285 DLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEA 344

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            G +    +  C  G +  ARR+ +A      MP K +  VW  ++ G + + + E    
Sbjct: 345 LGSKLVFMYVKC--GDMGSARRVFDA------MPSKGNVHVWNLIMGGYAKAAEFEESLL 396

Query: 365 VCDHLFEI 372
           + + + E+
Sbjct: 397 LFEQMHEL 404


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 269/478 (56%), Gaps = 50/478 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           D+V+W ++I GY+Q G  + C+AL  FR+M +    RP+ VT+VS+L AC     ++ G 
Sbjct: 464 DVVTWTAVITGYAQRG--QGCEALDVFRQMCDCGS-RPNVVTLVSLLSACVSVGALLHGK 520

Query: 63  EVHNFVIESHIKMD--------LWICNALIGMYAKCGSLDYARALLDEMS--DKDEVSYS 112
           E H + I+  + +D        L + N LI MYAKC S + AR + D +S  D+D V+++
Sbjct: 521 ETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWT 580

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            +I GY  HG    A+ LF               SG+ + ++               ++P
Sbjct: 581 VMIGGYAQHGDANNALQLF---------------SGMFKMDK--------------SIKP 611

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRV 231
           N  T+S      +  + L+ G+++H Y ++N Y    ++VA  +ID Y+K+G +  AQ V
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIV 671

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FD    R+ + WT++++ Y  HG    A+ +F+EM    + PD +TF  VL AC+HSG+V
Sbjct: 672 FDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMV 731

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
           D   + FN MS  +G+ P  EHYACMV +  RA R+ EA + +++MP++P+  VW ALL 
Sbjct: 732 DHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLS 791

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
              +  +VELG+F  + L E+E  N G+Y +++N+Y+ A RW +  R+R  MK +G+ K 
Sbjct: 792 ACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKR 851

Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           PG SWI+   G+ +F   D S  +S+QIY  L  L+  ++  GYV      L +V++E
Sbjct: 852 PGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDE 909



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 218/455 (47%), Gaps = 58/455 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWNS+++ Y          ALF +M    ++ PD +++V++L AC   +  + G +
Sbjct: 326 QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ 385

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH F I S +  D+++ NA++ MYAKCG ++ A  +   M  KD VS++A+++GY   G 
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445

Query: 124 VEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +E A+ LF+ M    +     TW AVI+G  Q  +    LD+ R+M   G RPN VT+ S
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVS 505

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK--------NRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           + S       L  GKE H YA+K        +    ++ V   +ID YAK      A+++
Sbjct: 506 LLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKM 565

Query: 232 FDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEM--LNNGIQPDPVTFTAVLSACAH 287
           FD    K R ++ WT +I  YA HGDA+ A+ LF+ M  ++  I+P+  T +  L ACA 
Sbjct: 566 FDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACAR 625

Query: 288 ------------------------------------SGLVDKAWDIFNAMSGQYGIQPSV 311
                                               SG VD A  +F+ M  +  +  S 
Sbjct: 626 LAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAV--SW 683

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL-- 369
                  G+  R        + + K+P+ P    +  +LY  S SG V+ G    + +  
Sbjct: 684 TSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 370 -FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            F ++P    +Y  M +L+ +AGR  EA ++  +M
Sbjct: 744 DFGVDP-GPEHYACMVDLWGRAGRLGEAMKLINEM 777



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 35/313 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S   +  WN +I      G   +   L+R+M  S    PD  T   V +AC   S +  G
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQM-KSLGWTPDHYTFPFVFKACANLSSLSLG 278

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGY 118
             +H  V  S    ++++CNA++ MY KCG+L +A  + D++  +   D VS+++++S Y
Sbjct: 279 ASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAY 338

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           M       A+ LF  M                   RH              + P+ +++ 
Sbjct: 339 MWASDANTALALFHKM-----------------TTRHL-------------MSPDVISLV 368

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +I    +  +    G+++HG+++++    +++V  A++D YAK G +  A +VF R K +
Sbjct: 369 NILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK 428

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+++ Y+  G    A+SLF  M    I+ D VT+TAV++  A  G   +A D+F
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVF 488

Query: 299 NAMSGQYGIQPSV 311
             M    G +P+V
Sbjct: 489 RQMC-DCGSRPNV 500



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 172/390 (44%), Gaps = 25/390 (6%)

Query: 36  PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI------KMDLWICNAL-IGMYA 88
           P +R   +  VSVLQ           M +  F I+S +         L  C  + I    
Sbjct: 113 PAIR---IVFVSVLQQLHHRYRCSISMLLRCFPIKSKLLQSQFTNTRLLSCATIPITALK 169

Query: 89  KCGSLDYARALLDEMSDKDEVSY---SAIISGYMVHGFVEKAMDLFQVMKRPGLST---W 142
           +C SL +A+ LL + S    + +   + +I  Y+       A+ L + +  P  S+   W
Sbjct: 170 ECNSLAHAK-LLHQQSIMQGLLFHLATNLIGTYIASNSTAYAILLLERLP-PSPSSVFWW 227

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           N +I   +       V  L R+M++ G  P+  T   +F   ++ S+L  G  +H    +
Sbjct: 228 NQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSR 287

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKA 259
           + +  N++V  A++  Y K G L  A  +FD    R    L+ W +++SAY    DA+ A
Sbjct: 288 SGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTA 347

Query: 260 VSLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           ++LF++M    +  PD ++   +L ACA      +   + +  S + G+   V     +V
Sbjct: 348 LALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQV-HGFSIRSGLVDDVFVGNAVV 406

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NT 377
            + ++  ++ EA +   +M  K     W A++ G S +G +E    + + + E   E + 
Sbjct: 407 DMYAKCGKMEEANKVFQRMKFKDVVS-WNAMVTGYSQAGRLEHALSLFERMTEENIELDV 465

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESG 407
             +  +   Y+Q G+  EA  V  QM + G
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCG 495


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 265/473 (56%), Gaps = 41/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K+D+VSW S+IAGY+Q     E   L   ML     +P+G T  S+L+A G  +D   
Sbjct: 112 MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGR-FKPNGFTFASLLKAAGAYADSGI 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS---------- 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  +    E  L +  EMQ +G      T SSI
Sbjct: 221 ---------------------WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSI 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + VK+R     +V   ++D YAK+G +  A++VF+R   + L
Sbjct: 260 FSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDL 319

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++A+A +G   +AVS F EM  +GI  + +TF  +L+AC+H GLV +    F+ 
Sbjct: 320 VTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD- 378

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P +EHY  +V +L RA  ++ A  F+ KMP++P+A VWGALL    +  + +
Sbjct: 379 MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAK 438

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+F+++P+++G  +++ N+Y+  G WD A RVR+ MK +G+ K P  SW+E  
Sbjct: 439 VGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIG 498

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEES 465
             +  FVA D +  ++E+IY + + +   +R+EGYV         +DE E E+
Sbjct: 499 NSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREA 551



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 18/244 (7%)

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P      +  +  +   NL   ++IHG+   +R++ + ++  ++I  Y K G +  A +V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC---AHS 288
           FD+ + + ++ WT++I+ YA +   ++A+ L   ML    +P+  TF ++L A    A S
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G+  +     +A++ +      V   + ++ + +R  ++  AT    K+  K     W A
Sbjct: 169 GIGGQ----IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS-WNA 223

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS--------QAGRWDEADRVR 400
           L+ G +  GD E    V   +     E T  +   ++++S        + G+W  A  V+
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEAT--HFTYSSIFSGLAGIGALEQGKWVHAHMVK 281

Query: 401 EQMK 404
            + K
Sbjct: 282 SRQK 285


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 263/468 (56%), Gaps = 38/468 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SK+++V+WN+MI  Y Q   Y+   A F+ +L   + +P+  T  S+L  C  S  +  
Sbjct: 474 ISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI-KPNSSTFTSILNVCKSSDSLEL 532

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++++ ++ DL + NAL+ M+  CG L         MS K+             
Sbjct: 533 GKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL---------MSAKN------------- 570

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    LF  M +  L +WN +I+G VQ+ +++   D  + MQ SG++P+ +T + +
Sbjct: 571 ---------LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ +H    +  +D ++ V T +I  Y K G +  A +VF +   +++
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV 681

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT++I+ YA HG   +A+ LF +M   G++PD +TF   LSACAH+GL+++    F +
Sbjct: 682 YSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQS 741

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I+P +EHY CMV +  RA  ++EA EF+ KM V+P ++VWGALL    +  +VE
Sbjct: 742 MK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVE 800

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +       E++P + G ++I++N+Y+ AG W E  ++R+ M + G+ K PG+SWIE  
Sbjct: 801 LAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVD 860

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
           G + +F + D +  ++E+I+  LERL   MR+ GYV     +L +VE+
Sbjct: 861 GKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVED 908



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 192/398 (48%), Gaps = 65/398 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+ SWN ++ GY Q G YEE   L  +M+   V +PD  T VS+L AC  + ++  
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV-KPDKRTFVSMLNACADARNVDK 229

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E++N ++++    DL++  ALI M+ KCG +  A  + D +  +D             
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD------------- 276

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L TW ++I+GL ++ R +   +L + M+  GV+P+ V   S+
Sbjct: 277 ------------------LVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   L+ GK++H    +  +D  IYV TAI+  Y K G +  A  VFD  KGR++
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN- 299
           + WTA+I+ +A HG   +A   FN+M+ +GI+P+ VTF ++L AC+    + +   I + 
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 300 AMSGQYG----IQPSVEHYACMVGVLSRARRISEA-------------TEFVS------- 335
            +   YG    ++ ++       G L  A R+ E              T +V        
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 336 --------KMPVKPSAKVWGALLYGASISGDVELGKFV 365
                   K  +KP++  + ++L     S  +ELGK+V
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 174/364 (47%), Gaps = 41/364 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+V+W SMI G ++ G +++   LF+ M    V +PD V  VS+L+AC     +  
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV-QPDKVAFVSLLRACNHPEALEQ 330

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  + E     ++++  A++ MY KCGS+                           
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSM--------------------------- 363

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E A+++F ++K   + +W A+I+G  Q+ R +       +M  SG+ PN VT  SI
Sbjct: 364 ----EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSI 419

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S LK G++I  + ++  Y  +  V TA++  YAK G L  A RVF++   +++
Sbjct: 420 LGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFN 299
           + W A+I+AY  H     A++ F  +L  GI+P+  TFT++L+ C  S  ++   W  F 
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M    G++  +     +V +      +  A    + MP K     W  +     I+G V
Sbjct: 540 IMKA--GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTI-----IAGFV 591

Query: 360 ELGK 363
           + GK
Sbjct: 592 QHGK 595



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 198/428 (46%), Gaps = 68/428 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++VSW +MIAG++Q G  +E    F +M+ S +  P+ VT +S+L AC   S +  G +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI-EPNRVTFMSILGACSSPSALKRGQQ 434

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           + + +IE+    D  +  AL+ MYAKCGSL                              
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSL------------------------------ 464

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            + A  +F+ + +  +  WNA+I+  VQ+ +++  L   + +   G++PN+ T +SI ++
Sbjct: 465 -KDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +L+ GK +H   +K   + +++V+ A++  +   G L  A+ +F+    R L+ W
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD 292
             II+ +  HG    A   F  M  +GI+PD +TFT +L+ACA           H+ + +
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643

Query: 293 KAWD----IFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEATEF 333
            A+D    +   +   Y    S+E                +  M+   ++  R  EA E 
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALEL 703

Query: 334 VSKMP---VKPSAKVWGALLYGASISGDVELG--KFVCDHLFEIEPENTGNYIIMANLYS 388
             +M    VKP    +   L   + +G +E G   F     F IEP    +Y  M +L+ 
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPR-MEHYGCMVDLFG 762

Query: 389 QAGRWDEA 396
           +AG  +EA
Sbjct: 763 RAGLLNEA 770



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 207/444 (46%), Gaps = 76/444 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D    N+++   S+ G + E   +  E ++S  ++    T  ++LQ C +  ++  G  
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVL-ERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           ++N + +S ++ D+++ N LI MYAKCG+   A+ + D+M +KD  S++ ++ GY+ HG 
Sbjct: 132 IYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A  L                        HE       +M    V+P+  T  S+ + 
Sbjct: 192 YEEAFKL------------------------HE-------QMVQDSVKPDKRTFVSMLNA 220

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   N+  G+E++   +K  +D +++V TA+I+ + K G +  A +VFD    R L+ W
Sbjct: 221 CADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTW 280

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH---------------- 287
           T++I+  A HG   +A +LF  M   G+QPD V F ++L AC H                
Sbjct: 281 TSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE 340

Query: 288 -------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                               G ++ A ++F+ + G+     +V  +  M+   ++  RI 
Sbjct: 341 VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-----NVVSWTAMIAGFAQHGRID 395

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI-EPENTGNYIIMA 384
           EA  F +KM    ++P+   + ++L   S    ++ G+ + DH+ E     +      + 
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALL 455

Query: 385 NLYSQAGRWDEADRVREQMKESGL 408
           ++Y++ G   +A RV E++ +  +
Sbjct: 456 SMYAKCGSLKDAHRVFEKISKQNV 479


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 259/468 (55%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y+E   LF+EM+ + + RPD  T+V+V+ AC QS  I  G +
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKEMMKTNI-RPDESTMVTVVSACAQSGSIELGRQ 287

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I N+L+ +Y+KCG L+ A  L + +  KD +S             
Sbjct: 288 VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVIS------------- 334

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +I G    N ++  L L +EM  SG RPN VT+ SI   
Sbjct: 335 ------------------WNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPA 376

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRN--IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID YAK G +  A +VF+    +SL 
Sbjct: 377 CAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A  A  +F+ M   GI+PD +TF  +LSAC+ SG++D    IF  M
Sbjct: 437 SWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTM 496

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y I P +EHY CM+ +L  +    EA E ++ M ++P   +W +LL    I G+VEL
Sbjct: 497 TQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVEL 556

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+    +L +IEPEN G Y++++N+Y+ AGRW+E  ++R  + + G+ K+PG S IE   
Sbjct: 557 GESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 616

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L+ + G+V     +L E+EEE
Sbjct: 617 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 213/443 (48%), Gaps = 50/443 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L P+  T   +L++C +S     G ++
Sbjct: 98  NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKSKAFKEGQQI 156

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +DL++  +LI +Y + G L+ AR + D    +D VSY+A+I GY   G++
Sbjct: 157 HGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYI 216

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  LF  +    + +WNA+ISG  +   ++  L+L +EM  + +RP+  T+ ++ S  
Sbjct: 217 ESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSAC 276

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +++ G+++H +   + +  N+ +  +++D Y+K G L  A  +F+    + +I W 
Sbjct: 277 AQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWN 336

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------------ 292
            +I  Y       +A+ LF EML +G +P+ VT  ++L ACAH G +D            
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 396

Query: 293 -------------------------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
                                     A  +FN++     +  S+  +  M+   +   R 
Sbjct: 397 LKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-----LHKSLSSWNAMIFGFAMHGRA 451

Query: 328 SEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
             A +  S+M    ++P    +  LL   S SG ++LG+ +   +   ++I P+   +Y 
Sbjct: 452 DAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPK-LEHYG 510

Query: 382 IMANLYSQAGRWDEADRVREQMK 404
            M +L   +G + EA+ +   M+
Sbjct: 511 CMIDLLGHSGLFKEAEEMINNME 533



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 87  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR------------ 234
               K G++IHG+ +K  YD +++V T++I  Y + G L  A++VFDR            
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206

Query: 235 FKG-------------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            KG                   + ++ W A+IS YA  G+  +A+ LF EM+   I+PD 
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDE 266

Query: 276 VTFTAVLSACAHSGLVD 292
            T   V+SACA SG ++
Sbjct: 267 STMVTVVSACAQSGSIE 283


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 260/493 (52%), Gaps = 40/493 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K DIV+WNS+++GY+  G  ++  A+ + M     L+P   ++ S+LQA  +   +  G 
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRM-QIAGLKPSTSSISSLLQAVAEPGHLKLGK 245

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---------------- 106
            +H +++ + +  D+++   LI MY K G L YAR + D M  K                
Sbjct: 246 AIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYAC 305

Query: 107 -------------------DEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWN 143
                              D ++++++ SGY   G  EKA+D+   MK     P + +W 
Sbjct: 306 LLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWT 365

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A+ SG  +N      L +  +MQ  GV PNA T+S++  +    S L  GKE+HG+ ++ 
Sbjct: 366 AIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRK 425

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
               + YVATA++D Y K+G L  A  +F   K +SL  W  ++  YA  G   + ++ F
Sbjct: 426 NLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAF 485

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           + ML  G++PD +TFT+VLS C +SGLV + W  F+ M  +YGI P++EH +CMV +L R
Sbjct: 486 SVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGR 545

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           +  + EA +F+  M +KP A +WGA L    I  D+EL +     L  +EP N+ NY++M
Sbjct: 546 SGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMM 605

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
            NLYS   RW++ +R+R  M+ + +      SWI+    +  F A+  +      IY  L
Sbjct: 606 INLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFEL 665

Query: 444 ERLLGLMREEGYV 456
            +L+  M++ GYV
Sbjct: 666 YKLVSEMKKSGYV 678



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 193/357 (54%), Gaps = 9/357 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD ++WN ++    + G +E+   LFREM  S     D  T+V +LQ C        
Sbjct: 49  MPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDS-TMVKLLQVCSNKEGFAE 107

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +V+   ++ ++ +CN+LI MY++ G L+ +R + + M D++  S+++I+S Y  
Sbjct: 108 GRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTK 167

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            G+V+ A+ L   M+    +P + TWN+++SG       +  + +++ MQ +G++P+  +
Sbjct: 168 LGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSS 227

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ISS+    +   +LK GK IHGY ++N+   ++YV T +ID Y KTG+L  A+ VFD   
Sbjct: 228 ISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMD 287

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++++ W +++S  +       A +L   M   GI+PD +T+ ++ S  A  G  +KA D
Sbjct: 288 AKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALD 347

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALL 350
           +   M  + G+ P+V  +  +    S+      A +   KM    V P+A     LL
Sbjct: 348 VIGKMK-EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLL 403



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 33/260 (12%)

Query: 60  FGMEVHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            G+ +H  +I+  +   D  + +A +G Y +C SL +A  L DEM  +D+++++ I+   
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G  EKA++LF                               REMQ SG +    T+ 
Sbjct: 65  LRSGNWEKAVELF-------------------------------REMQFSGAKAYDSTMV 93

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +  + S+      G++IHGY ++   + N+ +  ++I  Y++ G L  +++VF+  K R
Sbjct: 94  KLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDR 153

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L  W +I+S+Y   G    A+ L +EM   G++PD VT+ ++LS  A  GL   A  + 
Sbjct: 154 NLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVL 213

Query: 299 NAMSGQYGIQPSVEHYACMV 318
             M    G++PS    + ++
Sbjct: 214 KRMQIA-GLKPSTSSISSLL 232



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  + + SWN M+ GY+  G  EE  A F  ML +  + PD +T  SVL  C  S  +  
Sbjct: 457 IKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAG-MEPDAITFTSVLSVCKNSGLVQE 515

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
           G +  + +   + I   +  C+ ++ +  + G LD A   +  MS K D   + A +S  
Sbjct: 516 GWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSC 575

Query: 119 MVHG---FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            +H      E A    QV++    + +  +I+     NR E V + +R +    +R N V
Sbjct: 576 KIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDV-ERIRNL----MRNNRV 630

Query: 176 TISSIFS 182
            +  ++S
Sbjct: 631 RVQDLWS 637


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 262/444 (59%), Gaps = 3/444 (0%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S +D+V+W +MI GY++  + +E  ALF  ML+S V +P+ VT++++L AC Q  D   G
Sbjct: 214 SVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDV-KPNEVTMIALLSACSQKGDSEMG 272

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H  +    I   L + NA++ MY KCG L  AR + + M  +D  S++++++GY  +
Sbjct: 273 KTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKN 332

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSI 180
           G +  A  LF  M    + +WNA+I+G  QN++    L+L   M    G+ P   T+  +
Sbjct: 333 GDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCV 392

Query: 181 FSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S       L+ G+EIH  +  K     ++ +  A++D YAK G +  A ++F     ++
Sbjct: 393 LSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKN 452

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+ W ++ISAYA++G A KA++LF++M+ +G++PD +TF  VLSAC++ G V +    F 
Sbjct: 453 LVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFE 512

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   +G++P  EHYACMV +LSR   + EA E +S+MP++ S   WGALL      G+V
Sbjct: 513 SMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNV 572

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+ K   + L E++PE++G Y ++AN+ +   +W +   VR  M+E G+ K+PG S IE 
Sbjct: 573 EMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEI 632

Query: 420 SGGLQSFVAKDTSGDKSEQIYLIL 443
            G    F+  DTS  +S +IY ++
Sbjct: 633 EGKFHEFLVADTSHTRSSEIYRVV 656



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 169/337 (50%), Gaps = 10/337 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI GY +        + FR+M+ +     D  + V  L+ACGQ ++ + GM VH+ +
Sbjct: 120 WNTMIKGYCKANHPSMGFSFFRQMIRNRA-EFDSGSFVFALKACGQFAEKIVGMAVHSVI 178

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +     DL++ N LI  Y + G L +AR + DE S KD V+++ +I+GY  + ++++A+
Sbjct: 179 WKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAI 238

Query: 129 DLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            LF  M     +P   T  A++S   Q    E    L   ++   +  +   ++++  ++
Sbjct: 239 ALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMY 298

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                L   +EI      N   R+++  T++++ YAK G L  A+++FD    R+++ W 
Sbjct: 299 VKCGCLTTAREI----FNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWN 354

Query: 245 AIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           A+I+ Y+ +    +A+ LF+ M++  G+ P   T   VLSA    G ++   +I      
Sbjct: 355 AMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVN 414

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           + GIQ S+     ++ + ++   I  A +    MP K
Sbjct: 415 KIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEK 451



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 127/265 (47%), Gaps = 40/265 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+IVSWN+MIAGYSQ     E   LF  M++   L P   T+V VL A GQ   +  
Sbjct: 345 MPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEM 404

Query: 61  GMEVH-NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E+H N V +  I++ L + NA++ MYAKCGS+D A  L   M +K+ VS++++IS Y 
Sbjct: 405 GQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYA 464

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G  +KA+ LF                                +M  SG++P+ +T   
Sbjct: 465 SYGHAKKALTLFD-------------------------------QMIGSGLKPDHITFIG 493

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY----DRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           + S  S+   +  G + H  +++N +     R  Y    ++D  ++ G L  A  +  R 
Sbjct: 494 VLSACSYGGFVSEG-QAHFESMENCFGVEPKREHY--ACMVDLLSRVGLLKEAYELISRM 550

Query: 236 KGR-SLIIWTAIISAYAAHGDASKA 259
               S   W A++ A   HG+   A
Sbjct: 551 PMEASEGGWGALLDACRKHGNVEMA 575



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 7/283 (2%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  A  +F   + P    WN +I G  + N         R+M  +    ++ +     
Sbjct: 100 GDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFAL 159

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                F+    G  +H    K  +D +++V   +I  Y +TG L  A+++FD    + ++
Sbjct: 160 KACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVV 219

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT +I+ YA +    +A++LFN ML++ ++P+ VT  A+LSAC+  G  +    +   +
Sbjct: 220 TWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHI 279

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +  I  S+     M+ +  +   ++ A E  + M  +     W +LL G + +GD+  
Sbjct: 280 R-RKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNME-RRDVFSWTSLLNGYAKNGDLGS 337

Query: 362 GKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQM 403
            +     LF+  PE N  ++  M   YSQ  +  EA  +   M
Sbjct: 338 AR----KLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNM 376



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 62/304 (20%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           PG   WN++ +  + N                   P  + + S  S+F         K+I
Sbjct: 38  PGKPKWNSLSNVFISN-------------------PTLLILQSCSSMFQL-------KQI 71

Query: 197 HGYAVKNRYDRNIYVATAIIDTYA--KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
             +         I+ A+ ++   A   +G +H A  +FD+ +  +   W  +I  Y    
Sbjct: 72  QAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKAN 131

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVDKAWD----IFN 299
             S   S F +M+ N  + D  +F   L AC            HS +  + +D    + N
Sbjct: 132 HPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQN 191

Query: 300 AM------SGQYGI------QPSVEH---YACMVGVLSRARRISEATEFVSKM---PVKP 341
            +      +G  G       + SV+    +  M+   +R   + EA    + M    VKP
Sbjct: 192 GLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKP 251

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI-IMANLYSQAGRWDEADRVR 400
           +     ALL   S  GD E+GK + +H+   +   + N +  M ++Y + G    A  + 
Sbjct: 252 NEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIF 311

Query: 401 EQMK 404
             M+
Sbjct: 312 NNME 315


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 251/440 (57%), Gaps = 1/440 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  + V WN+MI  YS     EE   L+ +ML+  +   +  T   +L+AC   S +  
Sbjct: 71  ISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPH-NAYTFPFLLKACSALSALAE 129

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H  +I+     +++  N+L+ +YA  GS+  A  L D +  +D VS++ +I GY+ 
Sbjct: 130 THQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIK 189

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A  +FQ M    + +W ++I G V+   H+  L L+++M  +G++P+ +T+S  
Sbjct: 190 CGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCS 249

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ GK IH Y  KN+   +  +  A+ID Y K G +  A  VF + + + +
Sbjct: 250 LSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCV 309

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTAII  +A HG  S+A+  F +M   GI+P   TFTAVL+AC+H+GLV++   +F +
Sbjct: 310 YTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFES 369

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  Y ++P +EHY CMV +L RA  + EA EFV  MP+KP+A +WG+LL    +   +E
Sbjct: 370 MSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLE 429

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK +   L E++PE+ G YI +A++++ AG WDEA +VR  +K  GL  +PG S I  +
Sbjct: 430 LGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLN 489

Query: 421 GGLQSFVAKDTSGDKSEQIY 440
           G    F A         ++Y
Sbjct: 490 GVAHEFFAGAEPHPHVREMY 509



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 146/374 (39%), Gaps = 70/374 (18%)

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGF--VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           LL + + + +++ S +++ Y    F  +  A  +F  +  P    WN +I     +N  E
Sbjct: 34  LLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPE 93

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             L L  +M    +  NA T   +    S  S L    +IH   +K  +   +Y   +++
Sbjct: 94  EALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLL 153

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA-------------------- 256
             YA +G +  A  +FD    R ++ W  +I  Y   G+                     
Sbjct: 154 RVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTS 213

Query: 257 -----------SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQ 304
                       +A+ L  +ML  GI+PD +T +  LSACA  G +++  W        +
Sbjct: 214 MIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNK 273

Query: 305 YGIQP-----------------------------SVEHYACMVGVLSRARRISEATEFVS 335
             I P                              V  +  ++G  +   + SEA ++ +
Sbjct: 274 IKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFT 333

Query: 336 KMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQ 389
           +M    +KP++  + A+L   S +G VE GK + + +   + ++P    +Y  M +L  +
Sbjct: 334 QMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPV-MEHYGCMVDLLGR 392

Query: 390 AGRWDEADRVREQM 403
           AG   EA    E M
Sbjct: 393 AGFLKEAKEFVESM 406



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 11/249 (4%)

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF--LHGAQRVF 232
           + +    SL    SN+   K+IHG  +K    R+    + ++ TYA   F  L  A+ VF
Sbjct: 9   LNVEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVF 68

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           DR    + ++W  +I AY+   D  +A+ L+++ML++ I  +  TF  +L AC+    + 
Sbjct: 69  DRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALA 128

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +   I +    + G    V     ++ V + +  I  A      +P +     W  ++ G
Sbjct: 129 ETHQI-HVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVS-WNTMIDG 186

Query: 353 ASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
               G+VE+       +F+  PE N  ++  M   + + G   EA  + +QM  +G+   
Sbjct: 187 YIKCGNVEMAY----KIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIK-- 240

Query: 412 PGRSWIECS 420
           P +  + CS
Sbjct: 241 PDKITLSCS 249


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 269/478 (56%), Gaps = 14/478 (2%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC-GQSSDIV 59
            M   + + WN  I    Q    ++   LFR+M  S  L+ +  T+V VLQA   +   + 
Sbjct: 584  MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFS-FLKAETATIVRVLQASISELGFLN 642

Query: 60   FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
             G E H +V+ +    D+++  +LI MY K  SL  A+A+ D M +++  ++++++SGY 
Sbjct: 643  MGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYS 702

Query: 120  VHGFVEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
              G  E A+ L   M++    P L TWN +ISG       +  L    +MQ  GV PN+ 
Sbjct: 703  FKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSA 762

Query: 176  TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
            +I+ +    +  S L+ GKEIH  +++N +  +++VATA+ID Y+K+  L  A +VF R 
Sbjct: 763  SITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRI 822

Query: 236  KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
            + ++L  W  +I  +A  G   +A+S+FNEM   G+ PD +TFTA+LSAC +SGL+ + W
Sbjct: 823  QNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGW 882

Query: 296  DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
              F++M   Y I P +EHY CMV +L RA  + EA + +  MP+KP A +WGALL    I
Sbjct: 883  KYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRI 942

Query: 356  SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
              +++  +    +LF++EP N+ NYI+M NLYS   RW++ D +RE M  +G+      S
Sbjct: 943  HKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWS 1002

Query: 416  WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEES 465
            WI+ +  +  F + +     + +IY  L +L+  M++ GYV         +DEVE++ 
Sbjct: 1003 WIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQK 1060



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 147/317 (46%), Gaps = 35/317 (11%)

Query: 4   RDIVSWNSMIAGY-SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R+ + WNS +  + S  G       +F+E+    V+    V  V+ L+ C +  DI  GM
Sbjct: 485 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVA-LKTCTRVMDIWLGM 543

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H  +I+    +D+++  AL+  Y +C  L                             
Sbjct: 544 EIHGCLIKRGFDLDVYLRCALMNFYGRCWGL----------------------------- 574

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             EKA  +F  M  P    WN  I   +Q+ + +  ++L R+MQ S ++    TI  +  
Sbjct: 575 --EKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 632

Query: 183 L-FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              S    L  GKE HGY ++N +D ++YV T++ID Y K   L  AQ VFD  K R++ 
Sbjct: 633 ASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIF 692

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W +++S Y+  G    A+ L N+M   GI+PD VT+  ++S  A  G   +A   F  M
Sbjct: 693 AWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQM 752

Query: 302 SGQYGIQPSVEHYACMV 318
             Q G+ P+     C++
Sbjct: 753 Q-QEGVMPNSASITCLL 768



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 3/173 (1%)

Query: 114 IISGYMVHG-FVEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
           +IS Y+  G F   AM  +  + R  L  WN+ +     +      VL++ +E+   GV 
Sbjct: 462 LISSYLGFGDFWSAAMVFYVGLPRNYLK-WNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 520

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
            ++   S      +   ++  G EIHG  +K  +D ++Y+  A+++ Y +   L  A +V
Sbjct: 521 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 580

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           F        ++W   I          K V LF +M  + ++ +  T   VL A
Sbjct: 581 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA 633


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 263/468 (56%), Gaps = 38/468 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SK+++V+WN+MI  Y Q   Y+   A F+ +L   + +P+  T  S+L  C  S  +  
Sbjct: 474 ISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI-KPNSSTFTSILNVCKSSDSLEL 532

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++++ ++ DL + NAL+ M+  CG L         MS K+             
Sbjct: 533 GKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL---------MSAKN------------- 570

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    LF  M +  L +WN +I+G VQ+ +++   D  + MQ SG++P+ +T + +
Sbjct: 571 ---------LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ +H    +  +D ++ V T +I  Y K G +  A +VF +   +++
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV 681

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT++I+ YA HG   +A+ LF +M   G++PD +TF   LSACAH+GL+++    F +
Sbjct: 682 YSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQS 741

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I+P +EHY CMV +  RA  ++EA EF+ KM V+P ++VWGALL    +  +VE
Sbjct: 742 MK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVE 800

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +       E++P + G ++I++N+Y+ AG W E  ++R+ M + G+ K PG+SWIE  
Sbjct: 801 LAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVD 860

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
           G + +F + D +  ++E+I+  LERL   MR+ GYV     +L +VE+
Sbjct: 861 GKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVED 908



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 192/398 (48%), Gaps = 65/398 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+ SWN ++ GY Q G YEE   L  +M+   V +PD  T VS+L AC  + ++  
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV-KPDKRTFVSMLNACADARNVDK 229

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E++N ++++    DL++  ALI M+ KCG +  A  + D +  +D             
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD------------- 276

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L TW ++I+GL ++ R +   +L + M+  GV+P+ V   S+
Sbjct: 277 ------------------LVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   L+ GK++H    +  +D  IYV TAI+  Y K G +  A  VFD  KGR++
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN- 299
           + WTA+I+ +A HG   +A   FN+M+ +GI+P+ VTF ++L AC+    + +   I + 
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 300 AMSGQYG----IQPSVEHYACMVGVLSRARRISEA-------------TEFVS------- 335
            +   YG    ++ ++       G L  A R+ E              T +V        
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 336 --------KMPVKPSAKVWGALLYGASISGDVELGKFV 365
                   K  +KP++  + ++L     S  +ELGK+V
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 174/364 (47%), Gaps = 41/364 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+V+W SMI G ++ G +++   LF+ M    V +PD V  VS+L+AC     +  
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV-QPDKVAFVSLLRACNHPEALEQ 330

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  + E     ++++  A++ MY KCGS+                           
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSM--------------------------- 363

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E A+++F ++K   + +W A+I+G  Q+ R +       +M  SG+ PN VT  SI
Sbjct: 364 ----EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSI 419

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S LK G++I  + ++  Y  +  V TA++  YAK G L  A RVF++   +++
Sbjct: 420 LGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFN 299
           + W A+I+AY  H     A++ F  +L  GI+P+  TFT++L+ C  S  ++   W  F 
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M    G++  +     +V +      +  A    + MP K     W  +     I+G V
Sbjct: 540 IMKA--GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTI-----IAGFV 591

Query: 360 ELGK 363
           + GK
Sbjct: 592 QHGK 595



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 198/428 (46%), Gaps = 68/428 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++VSW +MIAG++Q G  +E    F +M+ S +  P+ VT +S+L AC   S +  G +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI-EPNRVTFMSILGACSSPSALKRGQQ 434

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           + + +IE+    D  +  AL+ MYAKCGSL                              
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSL------------------------------ 464

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            + A  +F+ + +  +  WNA+I+  VQ+ +++  L   + +   G++PN+ T +SI ++
Sbjct: 465 -KDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +L+ GK +H   +K   + +++V+ A++  +   G L  A+ +F+    R L+ W
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD 292
             II+ +  HG    A   F  M  +GI+PD +TFT +L+ACA           H+ + +
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643

Query: 293 KAWD----IFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEATEF 333
            A+D    +   +   Y    S+E                +  M+   ++  R  EA E 
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALEL 703

Query: 334 VSKMP---VKPSAKVWGALLYGASISGDVELG--KFVCDHLFEIEPENTGNYIIMANLYS 388
             +M    VKP    +   L   + +G +E G   F     F IEP    +Y  M +L+ 
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPR-MEHYGCMVDLFG 762

Query: 389 QAGRWDEA 396
           +AG  +EA
Sbjct: 763 RAGLLNEA 770



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 207/444 (46%), Gaps = 76/444 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D    N+++   S+ G + E   +  E ++S  ++    T  ++LQ C +  ++  G  
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVL-ERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           ++N + +S ++ D+++ N LI MYAKCG+   A+ + D+M +KD  S++ ++ GY+ HG 
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A  L                        HE       +M    V+P+  T  S+ + 
Sbjct: 192 YEEAFKL------------------------HE-------QMVQDSVKPDKRTFVSMLNA 220

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   N+  G+E++   +K  +D +++V TA+I+ + K G +  A +VFD    R L+ W
Sbjct: 221 CADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTW 280

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH---------------- 287
           T++I+  A HG   +A +LF  M   G+QPD V F ++L AC H                
Sbjct: 281 TSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE 340

Query: 288 -------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                               G ++ A ++F+ + G+     +V  +  M+   ++  RI 
Sbjct: 341 VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-----NVVSWTAMIAGFAQHGRID 395

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI-EPENTGNYIIMA 384
           EA  F +KM    ++P+   + ++L   S    ++ G+ + DH+ E     +      + 
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALL 455

Query: 385 NLYSQAGRWDEADRVREQMKESGL 408
           ++Y++ G   +A RV E++ +  +
Sbjct: 456 SMYAKCGSLKDAHRVFEKISKQNV 479


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 260/469 (55%), Gaps = 7/469 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ +SW  MIAGY++ G  E+      + L+   + P   ++ S   AC     +  
Sbjct: 378 MPFRNTISWAGMIAGYARNGRSEQALVSL-QALHRKGMLPSLSSLTSSFFACSNIEALET 436

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +++  + + ++CNALI +Y K  S+   R + D M+ KD VSY++ +S  + 
Sbjct: 437 GKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQ 496

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +   ++A D+F  M  P + +W  +IS   Q ++    +++ R M      PN   ++ +
Sbjct: 497 NNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTIL 556

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             L  +    + G++IH  A+K   D  + VA A++  Y K      + +VFD  + R +
Sbjct: 557 LGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA-DSLKVFDSMEERDI 615

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  II+ YA HG   +A+ ++  M++ G+ P+ VTF  +L AC+HSGLVD+    F +
Sbjct: 616 FTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKS 675

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG+ P +EHYACMV +L RA  +  A  F+  MP++P + +W ALL    I  +VE
Sbjct: 676 MSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVE 735

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+   + LF IEP N GNY++++N+YS  G WDE  +VR+ MKE G+ K PG SW++  
Sbjct: 736 IGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIK 795

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + SFV  D   ++ + IY  L  L  L++  GYV     +L +++EE
Sbjct: 796 NKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEE 844



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 170/368 (46%), Gaps = 34/368 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--- 57
           M  RDI++WNSMI  Y   G  +  ++L  + ++   LR  G  ++S     G+  D   
Sbjct: 59  MPFRDIIAWNSMIFAYCNNGMPDAGRSL-ADAISGGNLR-TGTILLSGYARAGRVRDARR 116

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +  GM V N V         W  NA++  Y + G +  AR L D M  +D  S++ +++G
Sbjct: 117 VFDGMGVRNTVA--------W--NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTG 166

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y     +E+A +LF+ M      +W  +ISG V   +H    D+ R M   G+ P    +
Sbjct: 167 YCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNL 226

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGFLHGAQRVFDRFK 236
            S+ S   H       + IH    K  ++R++ V TAI++ Y K    L  A + F+   
Sbjct: 227 VSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMA 286

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVD 292
            R+   W+ II+A +  G    A +++        Q DP+    + T++L+  A  G +D
Sbjct: 287 ARNEYTWSTIIAALSQAGRIDDAFAVY--------QRDPLKSVPSRTSMLTGLARYGRID 338

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            A  +F+ +      +P+V  +  M+    +   + EA +  ++MP + +   W  ++ G
Sbjct: 339 DAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTIS-WAGMIAG 392

Query: 353 ASISGDVE 360
            + +G  E
Sbjct: 393 YARNGRSE 400



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 44/301 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R+  +W+++IA  SQ G  ++  A+++                  L++    + ++ 
Sbjct: 285 MAARNEYTWSTIIAALSQAGRIDDAFAVYQR---------------DPLKSVPSRTSMLT 329

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+                         A+ G +D A+ L D++ + + VS++A+I+GYM 
Sbjct: 330 GL-------------------------ARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQ 364

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +  V++A DLF  M      +W  +I+G  +N R E  L  ++ +   G+ P+  +++S 
Sbjct: 365 NEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSS 424

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   S+   L+ GK++H  AVK     N YV  A+I  Y K   +   +++FDR   +  
Sbjct: 425 FFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDT 484

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + + + +SA   +    +A  +FN M +    PD V++T ++SACA +   ++A +IF +
Sbjct: 485 VSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRS 540

Query: 301 M 301
           M
Sbjct: 541 M 541



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 154/415 (37%), Gaps = 96/415 (23%)

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V +S    D+   N++I  Y   G  D  R+L D +S  +  + + ++SGY   G V  A
Sbjct: 55  VFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYARAGRVRDA 114

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             +F  M       WNA+++  VQN      + L R+                  LF   
Sbjct: 115 RRVFDGMGVRNTVAWNAMVTCYVQNGD----ITLARK------------------LFDAM 152

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +                 R++     ++  Y  +  +  A+ +F+R   R+ + WT +I
Sbjct: 153 PS-----------------RDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMI 195

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG------------------ 289
           S Y       +A  +F  ML  G+ P+     +VLSA  H G                  
Sbjct: 196 SGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFE 255

Query: 290 ------------------LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
                             ++D A   F  M+ +         ++ ++  LS+A RI +A 
Sbjct: 256 RDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYT-----WSTIIAALSQAGRIDDAF 310

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
               + P+K S     ++L G +  G ++  K + D + E    N  ++  M   Y Q  
Sbjct: 311 AVYQRDPLK-SVPSRTSMLTGLARYGRIDDAKILFDQIHE---PNVVSWNAMITGYMQNE 366

Query: 392 RWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
             DEA        E    ++P R+ I  +G     +A      +SEQ  + L+ L
Sbjct: 367 MVDEA--------EDLFNRMPFRNTISWAG----MIAGYARNGRSEQALVSLQAL 409



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           +A I    + G LH A+ VFD    R +I W ++I AY  +G      SL + +    ++
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
               T T +LS  A +G V  A  +F+ M    G++ +V  +  MV    +   I+ A +
Sbjct: 97  ----TGTILLSGYARAGRVRDARRVFDGM----GVRNTVA-WNAMVTCYVQNGDITLARK 147

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMAN---LYS 388
               MP +     W  +L G   S  +E  +    +LFE  PE  G ++ +M +   L  
Sbjct: 148 LFDAMPSR-DVSSWNTMLTGYCHSQLMEEAR----NLFERMPERNGVSWTVMISGYVLIE 202

Query: 389 QAGR-WD 394
           Q GR WD
Sbjct: 203 QHGRAWD 209


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/465 (36%), Positives = 258/465 (55%), Gaps = 39/465 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+V+W +MI G+ + G   E    F EM  + V   + +TVVSVL+A G+  D+ FG  
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGV-AANEMTVVSVLKAAGKVEDVRFGRS 225

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH   +E+  +K D++I ++L+ MY KC   D A+ + DEM  ++ V             
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVV------------- 272

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             TW A+I+G VQ+   +  + +  EM  S V PN  T+SS+ S
Sbjct: 273 ------------------TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H   L  G+ +H Y +KN  + N    T +ID Y K G L  A  VF+R   +++  
Sbjct: 315 ACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYT 374

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I+ +AAHG A  A  LF  ML++ + P+ VTF AVLSACAH GLV++   +F +M 
Sbjct: 375 WTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMK 434

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           G++ ++   +HYACMV +  R   + EA   + +MP++P+  VWGAL     +  D ELG
Sbjct: 435 GRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELG 494

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K+    + +++P ++G Y ++ANLYS++  WDE  RVR+QMK+  + K PG SWIE  G 
Sbjct: 495 KYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGK 554

Query: 423 LQSFVA-KDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESA 466
           L  F+A  D    +S+ +Y  L+ +   MR     L DE+E+ +A
Sbjct: 555 LCEFIAFDDKKPLESDDLYKTLDTVGVQMR-----LPDELEDVTA 594



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 36/288 (12%)

Query: 9   WNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           W+S+I  +S G       +   +R M  + V+ P   T   +L+A  +  D     + H 
Sbjct: 70  WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVI-PSRHTFPPLLKAVFKLRD-SNPFQFHA 127

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +++  +  D ++ N+LI  Y+  G  D+A  L D   DKD V+++A+I G++ +G   +
Sbjct: 128 HIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASE 187

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           AM  F                                EM+ +GV  N +T+ S+      
Sbjct: 188 AMVYFV-------------------------------EMKKTGVAANEMTVVSVLKAAGK 216

Query: 187 FSNLKGGKEIHG-YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             +++ G+ +HG Y    R   ++++ ++++D Y K      AQ+VFD    R+++ WTA
Sbjct: 217 VEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTA 276

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +I+ Y       K + +F EML + + P+  T ++VLSACAH G + +
Sbjct: 277 LIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHR 324



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 123/258 (47%), Gaps = 36/258 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++V+W ++IAGY Q   +++   +F EML S V  P+  T+ SVL AC     +  
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV-APNEKTLSSVLSACAHVGALHR 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++I++ I+++      LI +Y KCG L+ A  + + + +K+  +++A+I+G+  
Sbjct: 325 GRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAA 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+   A DLF                                 M +S V PN VT  ++
Sbjct: 385 HGYARDAFDLFYT-------------------------------MLSSHVSPNEVTFMAV 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S  +H   ++ G+ +   ++K R++  +       ++D + + G L  A+ + +R    
Sbjct: 414 LSACAHGGLVEEGRRLF-LSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPME 472

Query: 239 SL-IIWTAIISAYAAHGD 255
              ++W A+  +   H D
Sbjct: 473 PTNVVWGALFGSCLLHKD 490



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 5/161 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVI---SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           A  L   ++   +  W+++I   SG +  NR  + L   R M+ +GV P+  T   +   
Sbjct: 55  ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFL-AYRHMRRNGVIPSRHTFPPLLKA 113

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +     + H + VK   D + +V  ++I  Y+ +G    A R+FD  + + ++ W
Sbjct: 114 VFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTW 172

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           TA+I  +  +G AS+A+  F EM   G+  + +T  +VL A
Sbjct: 173 TAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 262/474 (55%), Gaps = 40/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+I +WN+ ++     G Y++    F E  +     P+ +T  + L AC  +S +  
Sbjct: 169 MPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEG-WEPNLITFCAFLNACAGASYLRL 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H FV++S  + D+ + N LI  Y KC                 +V  S II     
Sbjct: 228 GRQLHGFVLQSGFEADVSVANGLIDFYGKC----------------HQVGCSEII----- 266

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                     F  + +P   +W ++I   VQN+  E    +    +  G+ P    +SS+
Sbjct: 267 ----------FSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSV 316

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  S L+ GK +H  AVK     NI+V +A++D Y K G +  A+R FD    R+L
Sbjct: 317 LSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 376

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W A+I  YA  G A  AV+LF+EM   ++ + P+ VTF  VLSAC+ +G V+   +IF
Sbjct: 377 VTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIF 436

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M G+YGI+P  EHYAC+V +L RA  + +A +F+ KMP++P+  VWGALL  + + G 
Sbjct: 437 ESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGK 496

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELGK   D+LFE++P ++GN+++++N+++ AGRW+EA  VR++MK+ G+ K  G SWI 
Sbjct: 497 SELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWIT 556

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEESA 466
               +  F AKDTS +++ +I  +L +L G M   GY+      L D  EEE A
Sbjct: 557 AGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKA 610



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 141/334 (42%), Gaps = 38/334 (11%)

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
           Y+ +++ Y        A  L  +     + TW A+I+G VQN R  + L     M+   +
Sbjct: 45  YNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI 104

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           +PN  T    F       +   GK++H  AVK     +++V  +  D Y+K G    A++
Sbjct: 105 QPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARK 164

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA---- 286
           +FD    R++  W A +S     G    A++ F E  + G +P+ +TF A L+ACA    
Sbjct: 165 MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASY 224

Query: 287 -------HSGLVDKAWD----IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
                  H  ++   ++    + N +   YG    V     +   +S+   +S  +  VS
Sbjct: 225 LRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVS 284

Query: 336 ------------------KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
                             K  ++P+  +  ++L   +    +E+GK V  H   ++    
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSV--HTLAVKACVV 342

Query: 378 GNYII---MANLYSQAGRWDEADRVREQMKESGL 408
           GN  +   + ++Y + G  ++A+R  ++M E  L
Sbjct: 343 GNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 376



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++   +++ Y+K    + AQ +      RS++ WTA+I+    +G  + A+  F+ M  +
Sbjct: 43  FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD 102

Query: 270 GIQPDPVTFTAVLSACA--HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-MVGVLSRARR 326
            IQP+  TF     A     S LV K        +GQ     S     C    + S+A  
Sbjct: 103 SIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQI----SDVFVGCSAFDMYSKAGL 158

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISG--DVELGKFV 365
             EA +   +MP +  A  W A L  + + G  D  L  F+
Sbjct: 159 TEEARKMFDEMPERNIA-TWNAYLSNSVLEGRYDDALTAFI 198


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 264/473 (55%), Gaps = 42/473 (8%)

Query: 4    RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG-------VTVVSVLQACGQSS 56
            R++VSW SMI GY Q    +    LF++ L       DG       V +VSVL AC + S
Sbjct: 2079 RNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVS 2138

Query: 57   DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
                   VH FV++      + + N L+  YAKCG    ++ + D M +KD++S++++I+
Sbjct: 2139 GKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIA 2198

Query: 117  GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
             Y   G   +A+++F                G+V   RH             GVR NAVT
Sbjct: 2199 VYAQSGLSGEALEVFH---------------GMV---RH------------VGVRYNAVT 2228

Query: 177  ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +S++    +H   L+ GK IH   +K   + N+ V T+IID Y K G +  A++ FDR K
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 2288

Query: 237  GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
             +++  WTA+++ Y  HG A +A+ +F +M+  G++P+ +TF +VL+AC+H+GLV++ W 
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348

Query: 297  IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
             FNAM  +Y I+P +EHY CMV +  RA  ++EA   + +M +KP   VWG+LL    I 
Sbjct: 2349 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 2408

Query: 357  GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
             +V+LG+     LFE++P+N G Y++++NLY+ AGRW + +R+R  MK   L K PG S 
Sbjct: 2409 KNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSL 2468

Query: 417  IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +E  G +  F+  D      E IY  LE+L   +++ GYV     +L +V+EE
Sbjct: 2469 VELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEE 2521



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 187/358 (52%), Gaps = 12/358 (3%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN +I   +  G  E+   L++ M+   +   D  T   V++AC     I  G  VH  
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIA-ADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           +I+     D+++ N LI  Y KCG   +A  + ++M  ++ VS++ +ISG +  G +++A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             +F  +    + +W A+I+G ++N + E  L+L + MQA  + PN  T+ S+    +  
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L  G+ IH YA+KN  +  +Y+ TA+ID Y+K G +  A  VF+    +SL  W ++I
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           ++   HG   +A++LF+EM    ++PD +TF  VL AC H   V +    F  M+  YGI
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390

Query: 308 QPSVEHYACMVGVLSRARRISEA---TEFVSKMPVKPS------AK--VWGALLYGAS 354
            P  EHY CM  + +R+  + EA   T+ V  +   PS      AK   W  LL+  +
Sbjct: 391 APIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLLFDTT 448



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 207/441 (46%), Gaps = 62/441 (14%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            + K ++ SWNS+IA  ++GG   E    F   L    L P   +    +++C    D+V 
Sbjct: 1975 VDKSNVHSWNSVIADLARGGDSVEALRAFSS-LRKLGLIPTRSSFPCTIKSCSALCDLVS 2033

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G   H        + DL++ +ALI MY+KCG L  ARAL DE+  ++ VS++++I+GY+ 
Sbjct: 2034 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 2093

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            +   + A+ LF+      L     V  G   NN                V  ++V + S+
Sbjct: 2094 NEQADNALLLFKDF----LEEETEVEDG---NN----------------VPLDSVVMVSV 2130

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             S  S  S     + +HG+ VK  +D +I V   ++D YAK G    +++VFD  + +  
Sbjct: 2131 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 2190

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            I W ++I+ YA  G + +A+ +F+ M+ + G++ + VT +AVL ACAH+G +     I +
Sbjct: 2191 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 2250

Query: 300  ---AMSGQYGI---------------------------QPSVEHYACMVGVLSRARRISE 329
                M  +Y +                           + +V+ +  MV       R  E
Sbjct: 2251 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 2310

Query: 330  ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEPENTGNYIIM 383
            A +   KM    VKP+   + ++L   S +G VE G        H ++IEP    +Y  M
Sbjct: 2311 ALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP-GIEHYGCM 2369

Query: 384  ANLYSQAGRWDEADRVREQMK 404
             +L+ +AG  +EA  + ++MK
Sbjct: 2370 VDLFGRAGCLNEAYNLIKRMK 2390



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 47/291 (16%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M ++D +SWNSMIA Y+Q G   E   +F  M+    +R + VT+ +VL AC  +  +  
Sbjct: 2185 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 2244

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G  +H+ VI+  ++ ++ +  ++I MY KCG ++ A+   D M +K+  S++A+++GY +
Sbjct: 2245 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 2304

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            HG  ++A+D+F  M R                               +GV+PN +T  S+
Sbjct: 2305 HGRAKEALDIFYKMVR-------------------------------AGVKPNYITFVSV 2333

Query: 181  FSLFSHFSNLKGGKEIHGY-AVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +  SH   ++ G   H + A+K++YD    I     ++D + + G L+ A  +  R K 
Sbjct: 2334 LAACSHAGLVEEG--WHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKM 2391

Query: 238  R-SLIIWTAIISAYAAHGDAS----KAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +   ++W +++ A   H +       A  LF       + PD   +  +LS
Sbjct: 2392 KPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE------LDPDNCGYYVLLS 2436



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 10/206 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSW +MI GY +    EE   LF+ M    +  P+  T+VS+++AC +   +  G  
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF-PNEYTMVSLIKACTEMGILTLGRG 278

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H++ I++ I++ +++  ALI MY+KCGS+  A  + + M  K   +++++I+   VHG 
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 124 VEKAMDLFQVMKR----PGLSTWNAVISGLVQ-NNRHEAVLDLVREMQASGVRPNAVTIS 178
            ++A++LF  M+R    P   T+  V+   V   N  E      R  Q  G+ P      
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYE 398

Query: 179 SIFSLFSHFSNL----KGGKEIHGYA 200
            +  L++  +NL    K  KE+   A
Sbjct: 399 CMTELYARSNNLDEAFKSTKEVGSLA 424



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 44/305 (14%)

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D++    +I  Y  HG +  A+ LF  ++ P   TWN +I     N   E  L L + M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G+  +  T   +    ++F ++  GK +HG  +K  +  +++V   +ID Y K G   
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE-----------MLNNGIQ--- 272
            A +VF++ + R+++ WT +IS   + GD  +A  +F+E           M+N  I+   
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 273 -----------------PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE--- 312
                            P+  T  +++ AC   G++     I +     Y I+  +E   
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGV 292

Query: 313 -HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
                ++ + S+   I +A E    MP K S   W +++    + G   LG+   +   E
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSE 348

Query: 372 IEPEN 376
           +E  N
Sbjct: 349 MERVN 353



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 160/365 (43%), Gaps = 58/365 (15%)

Query: 107  DEVSYSAII----SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
            D ++Y++I+    SG   H  +  A   ++ + +  + +WN+VI+ L +       L   
Sbjct: 1946 DGITYNSILFGVPSGREDHSNL--ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAF 2003

Query: 163  REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
              ++  G+ P   +        S   +L  G+  H  A    ++ +++V++A+ID Y+K 
Sbjct: 2004 SSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC 2063

Query: 223  GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN--------NGIQPD 274
            G L  A+ +FD    R+++ WT++I+ Y  +  A  A+ LF + L         N +  D
Sbjct: 2064 GQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLD 2123

Query: 275  PVTFTAVLSACA-----------HSGLVDKAWD----IFNAMSGQYGI--QPSVEH---- 313
             V   +VLSAC+           H  +V K +D    + N +   Y    QP V      
Sbjct: 2124 SVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFD 2183

Query: 314  ---------YACMVGVLSRARRISEATE----FVSKMPVKPSAKVWGALLYGASISGDVE 360
                     +  M+ V +++    EA E     V  + V+ +A    A+L   + +G + 
Sbjct: 2184 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243

Query: 361  LGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
             GK + D + +++ E     G  II  ++Y + GR + A +  ++MKE  +     +SW 
Sbjct: 2244 AGKCIHDQVIKMDLEYNVCVGTSII--DMYCKCGRVEMAKKTFDRMKEKNV-----KSWT 2296

Query: 418  ECSGG 422
                G
Sbjct: 2297 AMVAG 2301



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 6/238 (2%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           R N     ++F L  +  N K  ++IH   +++    +  +   +I  Y+  G +  A  
Sbjct: 22  RGNIRAKKALF-LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAIL 80

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +F + +      W  II A   +G + +A+ L+  M+  GI  D  TF  V+ AC +   
Sbjct: 81  LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           +D    +  ++  +YG    V     ++    +      A +   KM V+ +   W  ++
Sbjct: 141 IDLGKVVHGSLI-KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVI 198

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            G    GD++  + + D   EI  +N  ++  M N Y +  + +EA  + ++M+   +
Sbjct: 199 SGLISCGDLQEARRIFD---EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 259/471 (54%), Gaps = 40/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           MS RDIV+WNS+I GY+Q G  Y      ++  L++  + PD  T+V V+ AC   +D+ 
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA--INPDAGTMVGVVPACALLNDLD 548

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
            G  +H  +++   + D  + NALI MYAKCGSL  A  L ++    KDEV         
Sbjct: 549 QGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV--------- 599

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                 TWN +I+  +QN   +  +    +M+     PN+VT  
Sbjct: 600 ----------------------TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFV 637

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    ++ +  + G   H   ++  +  N  V  ++ID YAK G L  ++++F+    +
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK 697

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + W A++S YA HG   +A++LF+ M  + +Q D V+F +VLSAC H+GLV++   IF
Sbjct: 698 DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIF 757

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           ++MS +Y I+P +EHYACMV +L RA    E   F+  MPV+P A VWGALL    +  +
Sbjct: 758 HSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSN 817

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V+LG+   DHL ++EP N  ++++++++Y+Q+GRW +A + R +M + GL K PG SW+E
Sbjct: 818 VKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 877

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F   D S  + E ++L+   LL  M + GYV     +L  VEEE
Sbjct: 878 LKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEE 928



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 138/286 (48%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSW +M+AGY+  G + E   LF +M    V R + V+ VS   A  ++ D+  
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV-RINKVSAVSAFLAAAETIDLEK 347

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   ++  I  D+ +   L+ MYAKCG                             
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGE---------------------------- 379

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               EKA  LF  ++   L  W+A+I+ LVQ    E  L L +EMQ   ++PN VT+ SI
Sbjct: 380 ---TEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S LK GK IH + VK   D ++   TA++  YAK GF   A   F+R   R +
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + W ++I+ YA  GD   A+ +F ++  + I PD  T   V+ ACA
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 152/292 (52%), Gaps = 36/292 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+V+WN+MIAG SQ     E    FR M    V  P  V+++++     + S+I  
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV-EPSSVSLLNLFPGICKLSNIEL 248

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H +V          + N LI +Y+KCG +D AR + D+M D+D+VS+  +++GY  
Sbjct: 249 CRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 121 HG-FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +G FVE                                VL+L  +M+   VR N V+  S
Sbjct: 307 NGCFVE--------------------------------VLELFDKMKLGNVRINKVSAVS 334

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            F   +   +L+ GKEIHG A++ R D +I VAT ++  YAK G    A+++F   +GR 
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           L+ W+AII+A    G   +A+SLF EM N  ++P+ VT  ++L ACA   L+
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 175/355 (49%), Gaps = 35/355 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+W+++IA   Q G+ EE  +LF+EM N   ++P+ VT++S+L AC   S +  G  
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADLSLLKLGKS 451

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F +++ +  DL    AL+ MYAKC                               GF
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKC-------------------------------GF 480

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+  F  M    + TWN++I+G  Q       +D+  +++ S + P+A T+  +   
Sbjct: 481 FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLII 242
            +  ++L  G  IHG  VK  ++ + +V  A+ID YAK G L  A+ +F++    +  + 
Sbjct: 541 CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVT 600

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  II+AY  +G A +A+S F++M      P+ VTF +VL A A+     +    F+A  
Sbjct: 601 WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM-AFHACI 659

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            Q G   +      ++ + ++  ++  + +  ++M  K +   W A+L G ++ G
Sbjct: 660 IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS-WNAMLSGYAVHG 713



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 34/291 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + WNSMI  Y++   Y E   ++  M+    L PD  T   VL+AC  + ++  G+  H 
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKG-LEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +    ++ D++I   L+ MY+K G L  AR + D+M  +D V+                
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA---------------- 197

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                          WNA+I+GL Q+      +D  R MQ  GV P++V++ ++F     
Sbjct: 198 ---------------WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICK 242

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            SN++  + IHGY    R D +  V+  +ID Y+K G +  A+RVFD+   +  + W  +
Sbjct: 243 LSNIELCRSIHGYVF--RRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTM 300

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           ++ YA +G   + + LF++M    ++ + V+  +   A A +  ++K  +I
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K   S + +I+ Y +    + A  +F     P    WN++I    ++ ++   L++   M
Sbjct: 61  KHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM 120

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              G+ P+  T + +    +   NL+ G   HG   +   +R++++   ++D Y+K G L
Sbjct: 121 VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDL 180

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
             A+ VFD+   R ++ W A+I+  +   D  +AV  F  M   G++P  V+ 
Sbjct: 181 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L S   +L    +IH   + + +  + +  T +I+ Y+       A+ VFD     S I+
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHH-HSITHLINLYSLFHKCDLARSVFDSTPNPSRIL 96

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-GLVDKAWDIFNAM 301
           W ++I AY      ++A+ ++  M+  G++PD  TFT VL AC  +  L +  W  F+  
Sbjct: 97  WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVW--FHGE 154

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             + G++  V   A +V + S+   +  A E   KMP K     W A++ G S S D
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSED 210


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 258/473 (54%), Gaps = 40/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +VSW +MI  Y+Q     E   LFR M  + V +P+ +T+V+VL AC +S D+  
Sbjct: 198 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASV-KPNEITLVNVLTACARSRDLET 256

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH ++ E+ I     + +AL+ +Y KCG    AR                       
Sbjct: 257 AKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLAR----------------------- 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   DLF  M    L  WN +I+G V+++ +E  L L  EMQ SGV+ + VT++S+
Sbjct: 294 --------DLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 345

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   L+ GK +H Y  K + + ++ + TA++D YAK G +  A RVF     + +
Sbjct: 346 LIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDV 405

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I   A  G   KA+ LF+EM  + ++PD +TF  VL+AC+H+GLV++    FN+
Sbjct: 406 MTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNS 465

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YGIQPS+EHY CMV +L RA RI+EA + +  MP+ P   V   LL    I G++ 
Sbjct: 466 MPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLV 525

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +     L E++P+N G Y++++N+YS    W+ A ++RE M E  + K PG S IE  
Sbjct: 526 VAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVG 585

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEES 465
           G +  FV  D S  +S +IY  L+ ++  ++  GYV         +DE E+E+
Sbjct: 586 GVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKEN 638



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 39/351 (11%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           + NS+I GY+      +   LF +++    L PD  T  S+ ++CG   +   G ++H  
Sbjct: 107 TCNSIIRGYTNKNLPRQ-AILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCH 162

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
             +     D +I N L+ MY+ CG L  AR + D+M +K  VS++ +I  Y         
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY--------- 213

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                       + W+           HEA+  L R M+ + V+PN +T+ ++ +  +  
Sbjct: 214 ------------AQWDL---------PHEAI-KLFRRMEIASVKPNEITLVNVLTACARS 251

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +L+  K++H Y  +     +  + +A++D Y K G    A+ +F++   ++L  W  +I
Sbjct: 252 RDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMI 311

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYG 306
           + +    D  +A+SLFNEM  +G++ D VT  ++L AC H G ++   W   +    +  
Sbjct: 312 NGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKW--LHVYIEKEK 369

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           I+  V     +V + ++   I  A     +MP K     W AL+ G ++ G
Sbjct: 370 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK-DVMTWTALIVGLAMCG 419



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 47/339 (13%)

Query: 107 DEVSYSAIISGYMVH--GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D  S S I++   +H  G +  A  +F  +  P   T N++I G    N     +   + 
Sbjct: 71  DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 130

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   G+ P+  T  S   LF     L  GK++H ++ K  +  + Y+   +++ Y+  G 
Sbjct: 131 MMLQGLDPDRFTFPS---LFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 187

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A++VFD+   +S++ W  +I AYA      +A+ LF  M    ++P+ +T   VL+A
Sbjct: 188 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP------ 338
           CA S  ++ A  +   +  + GI       + ++ V  +      A +  +KMP      
Sbjct: 248 CARSRDLETAKQVHKYID-ETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFC 306

Query: 339 ----------------------------VKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
                                       VK       +LL   +  G +ELGK++  H++
Sbjct: 307 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWL--HVY 364

Query: 371 EIEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            IE E    +      + ++Y++ G  + A RV ++M E
Sbjct: 365 -IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/476 (35%), Positives = 266/476 (55%), Gaps = 48/476 (10%)

Query: 4    RDIVSWNSMIAGYSQGGFYEECKALFREML----------NSPVLRPDGVTVVSVLQACG 53
            R++VSW SMI GY Q    +    LF++ L          N P+   D V +VSVL AC 
Sbjct: 1206 RNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPL---DSVVMVSVLSACS 1262

Query: 54   QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
            + S       VH FV++      + + N L+  YAKCG    ++ + D M +KD++S+++
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322

Query: 114  IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
            +I+ Y   G   +A+++F                G+V   RH             GVR N
Sbjct: 1323 MIAVYAQSGLSGEALEVFH---------------GMV---RH------------VGVRYN 1352

Query: 174  AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            AVT+S++    +H   L+ GK IH   +K   + N+ V T+IID Y K G +  A++ FD
Sbjct: 1353 AVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFD 1412

Query: 234  RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            R K +++  WTA+++ Y  HG A +A+ +F +M+  G++P+ +TF +VL+AC+H+GLV++
Sbjct: 1413 RMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEE 1472

Query: 294  AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
             W  FNAM  +Y I+P +EHY CMV +  RA  ++EA   + +M +KP   VWG+LL   
Sbjct: 1473 GWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 1532

Query: 354  SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
             I  +V+LG+     LFE++P+N G Y++++NLY+ AGRW + +R+R  MK   L K PG
Sbjct: 1533 RIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPG 1592

Query: 414  RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             S +E  G +  F+  D      E IY  LE+L   +++ GYV     +L +V+EE
Sbjct: 1593 FSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEE 1648



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 180/338 (53%), Gaps = 4/338 (1%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN +I   +  G  E+   L++ M+   +   D  T   V++AC     I  G  VH  
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIA-ADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           +I+     D+++ N LI  Y KCG   +A  + ++M  ++ VS++ +ISG +  G +++A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             +F  +    + +W A+I+G ++N + E  L+L + MQA  + PN  T+ S+    +  
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L  G+ IH YA+KN  +  +Y+ TA+ID Y+K G +  A  VF+    +SL  W ++I
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           ++   HG   +A++LF+EM    ++PD +TF  VL AC H   V +    F  M+  YGI
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390

Query: 308 QPSVEHYACMVGVLSRARRISEA---TEFVSKMPVKPS 342
            P  EHY CM  + +R+  + EA   T+ V  +   PS
Sbjct: 391 APIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPS 428



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 207/442 (46%), Gaps = 64/442 (14%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            + K ++ SWNS+IA  ++GG   E    F   L    L P   +    +++C    D+V 
Sbjct: 1102 VDKSNVHSWNSVIADLARGGDSVEALRAFSS-LRKLGLIPTRSSFPCTIKSCSALCDLVS 1160

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G   H        + DL++ +ALI MY+KCG L  ARAL DE+  ++ VS++++I+GY+ 
Sbjct: 1161 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 1220

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP-NAVTISS 179
            +   + A+ LF+                          L+   E++     P ++V + S
Sbjct: 1221 NEQADNALLLFK------------------------DFLEEETEVEDGNNVPLDSVVMVS 1256

Query: 180  IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            + S  S  S     + +HG+ VK  +D +I V   ++D YAK G    +++VFD  + + 
Sbjct: 1257 VLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKD 1316

Query: 240  LIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             I W ++I+ YA  G + +A+ +F+ M+ + G++ + VT +AVL ACAH+G +     I 
Sbjct: 1317 DISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIH 1376

Query: 299  N---AMSGQYGI---------------------------QPSVEHYACMVGVLSRARRIS 328
            +    M  +Y +                           + +V+ +  MV       R  
Sbjct: 1377 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAK 1436

Query: 329  EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEPENTGNYII 382
            EA +   KM    VKP+   + ++L   S +G VE G        H ++IEP    +Y  
Sbjct: 1437 EALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP-GIEHYGC 1495

Query: 383  MANLYSQAGRWDEADRVREQMK 404
            M +L+ +AG  +EA  + ++MK
Sbjct: 1496 MVDLFGRAGCLNEAYNLIKRMK 1517



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 132/259 (50%), Gaps = 37/259 (14%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M ++D +SWNSMIA Y+Q G   E   +F  M+    +R + VT+ +VL AC  +  +  
Sbjct: 1312 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 1371

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G  +H+ VI+  ++ ++ +  ++I MY KCG ++ A+   D M +K+  S++A+++GY +
Sbjct: 1372 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 1431

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            HG  ++A+D+F  M R                               +GV+PN +T  S+
Sbjct: 1432 HGRAKEALDIFYKMVR-------------------------------AGVKPNYITFVSV 1460

Query: 181  FSLFSHFSNLKGGKEIHGY-AVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +  SH   ++ G   H + A+K++YD    I     ++D + + G L+ A  +  R K 
Sbjct: 1461 LAACSHAGLVEEG--WHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKM 1518

Query: 238  RS-LIIWTAIISAYAAHGD 255
            +   ++W +++ A   H +
Sbjct: 1519 KPDFVVWGSLLGACRIHKN 1537



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 10/209 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++VSW +MI GY +    EE   LF+ M    +  P+  T+VS+++AC +   +  
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF-PNEYTMVSLIKACTEMGILTL 275

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H++ I++ I++ +++  ALI MY+KCGS+  A  + + M  K   +++++I+   V
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGV 335

Query: 121 HGFVEKAMDLFQVMKR----PGLSTWNAVISGLVQ-NNRHEAVLDLVREMQASGVRPNAV 175
           HG  ++A++LF  M+R    P   T+  V+   V   N  E      R  Q  G+ P   
Sbjct: 336 HGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPE 395

Query: 176 TISSIFSLFSHFSNL----KGGKEIHGYA 200
               +  L++  +NL    K  KE+   A
Sbjct: 396 HYECMTELYARSNNLDEAFKSTKEVGSLA 424



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 44/305 (14%)

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D++    +I  Y  HG +  A+ LF  ++ P   TWN +I     N   E  L L + M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G+  +  T   +    ++F ++  GK +HG  +K  +  +++V   +ID Y K G   
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE-----------MLNNGIQ--- 272
            A +VF++ + R+++ WT +IS   + GD  +A  +F+E           M+N  I+   
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 273 -----------------PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE--- 312
                            P+  T  +++ AC   G++     I +     Y I+  +E   
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGV 292

Query: 313 -HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
                ++ + S+   I +A E    MP K S   W +++    + G   LG+   +   E
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSE 348

Query: 372 IEPEN 376
           +E  N
Sbjct: 349 MERVN 353



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 165/399 (41%), Gaps = 63/399 (15%)

Query: 80   CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK-----------AM 128
            C+A  G      SL +  AL   ++ +    +  +     + GF              A 
Sbjct: 1037 CSATCGPNVVSISLTFMSALTGSLTTRFSSVFLRVAEDQFLLGFPSSRRRPVSLSSNLAT 1096

Query: 129  DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
              ++ + +  + +WN+VI+ L +       L     ++  G+ P   +        S   
Sbjct: 1097 WFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALC 1156

Query: 189  NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            +L  G+  H  A    ++ +++V++A+ID Y+K G L  A+ +FD    R+++ WT++I+
Sbjct: 1157 DLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 1216

Query: 249  AYAAHGDASKAVSLFNEMLN--------NGIQPDPVTFTAVLSACA-----------HSG 289
             Y  +  A  A+ LF + L         N +  D V   +VLSAC+           H  
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 1276

Query: 290  LVDKAWD----IFNAMSGQYGI--QPSVEH-------------YACMVGVLSRARRISEA 330
            +V K +D    + N +   Y    QP V               +  M+ V +++    EA
Sbjct: 1277 VVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEA 1336

Query: 331  TE----FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE---NTGNYIIM 383
             E     V  + V+ +A    A+L   + +G +  GK + D + +++ E     G  II 
Sbjct: 1337 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII- 1395

Query: 384  ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
             ++Y + GR + A +  ++MKE  +     +SW     G
Sbjct: 1396 -DMYCKCGRVEMAKKTFDRMKEKNV-----KSWTAMVAG 1428



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 5/226 (2%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L  +  N K  ++IH   +++    +  +   +I  Y+  G +  A  +F + +      
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  II A   +G + +A+ L+  M+  GI  D  TF  V+ AC +   +D    +  ++ 
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +YG    V     ++    +      A +   KM V+ +   W  ++ G    GD++  
Sbjct: 153 -KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQEA 210

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + + D   EI  +N  ++  M N Y +  + +EA  + ++M+   +
Sbjct: 211 RRIFD---EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 273/539 (50%), Gaps = 76/539 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V WN+M++G  +   ++E   +F +M+   +   D  TV +VL    +  D+  
Sbjct: 167 MLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGI-GFDSTTVAAVLPGVAELQDLAL 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA------------------------ 96
           GM +    ++       ++   L  +Y+KCG ++ A                        
Sbjct: 226 GMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTC 285

Query: 97  --------RALLDEMSDKDEVSYSAIIS--------GYM-----VHGF------------ 123
                   R   + +   ++V+ S+I+         G++     +HGF            
Sbjct: 286 NNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSV 345

Query: 124 -------------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
                        +E A  LF       L++WNA+ISG  QN   E  + L +EMQ   V
Sbjct: 346 STALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEV 405

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RPN VT++SI S  +    L  GK +H    +  ++ NI+V+TA+ID YAK G +  AQR
Sbjct: 406 RPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQR 465

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +F     ++ + W A+IS Y  HG   +A++LFNEML++ + P  VTF +VL AC+H+GL
Sbjct: 466 LFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGL 525

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V +  +IF +M   +G +P  EHYACMV +L RA  + +A +F+ KMPV+P   VWGALL
Sbjct: 526 VREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALL 585

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               I  D  L +   D LFE++P+N G Y++++N+YS    + EA  VR  +K   LAK
Sbjct: 586 GACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAK 645

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            PG + IE +  L  F + D S  ++  IY +LE+L G MRE G+       L +VEEE
Sbjct: 646 TPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEE 704



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/441 (19%), Positives = 173/441 (39%), Gaps = 80/441 (18%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  +N +I  +S         +L+  +  S  L PD  T   V+         +     
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
               I +    DL++ +A++  Y K   +  AR + D M ++D V ++ ++         
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMV--------- 179

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                 SGLV+N+  +  + +  +M   G+  ++ T++++    
Sbjct: 180 ----------------------SGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGV 217

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L  G  I   A+K  +  + YV T +   Y+K G +  A+ +F +     L+ + 
Sbjct: 218 AELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYN 277

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPD--------PVTF------------------ 278
           A+IS Y  + +   +V LF E+L +G + +        PV F                  
Sbjct: 278 AMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS 337

Query: 279 ---------TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
                    TA+ +  +    ++ A  +F+  S     + S+  +  M+   ++     +
Sbjct: 338 GVVSNSSVSTALTTVYSRLNEIESARLLFDESS-----EKSLASWNAMISGYAQNGLTEK 392

Query: 330 ATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA-- 384
           A     +M    V+P+     ++L   +  G + LGK+V D L   E   +  ++  A  
Sbjct: 393 AISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHD-LINRESFESNIFVSTALI 451

Query: 385 NLYSQAGRWDEADRVREQMKE 405
           ++Y++ G   EA R+   M E
Sbjct: 452 DMYAKCGSITEAQRLFSMMPE 472



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFS 182
           +++A  LF  +  P L  +N +I     NN   + + L   ++ S  + P+  T + + S
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVIS 117

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S             +++   +  +++V +AI+  Y K   +  A++VFD    R  ++
Sbjct: 118 GASSLGLGLLLHA---HSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVL 174

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           W  ++S    +    +A+ +F +M+  GI  D  T  AVL   A
Sbjct: 175 WNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVA 218


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/528 (33%), Positives = 278/528 (52%), Gaps = 70/528 (13%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I   S      E   L+  ML S  L+PD +T   V++AC +SS   FG+ VH  V
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSG-LKPDHMTYPFVIKACNESSVTWFGLLVHTHV 221

Query: 69  IES-------------------------------------------------HIKM---- 75
           ++S                                                 H++M    
Sbjct: 222 VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHAR 281

Query: 76  ---DLWIC------NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
              D  +C      N +I  YA  G +D A+ L DEM +++ VS++++++G++  G VE 
Sbjct: 282 MVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVED 341

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  LF  M    + +WN++++   Q  +    L L  +M+A GV+P   T+ S+ S  +H
Sbjct: 342 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 401

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L  G  +H Y   NR + N  V TA++D YAK G +  A +VF+  + + ++ W  I
Sbjct: 402 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 461

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+  A HG+  +A  LF EM   G++P+ +TF A+LSAC+H+G+VD+   + + MS  YG
Sbjct: 462 IAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYG 521

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           I+P VEHY C++ +L+RA  + EA E +  MP++P+    GALL G  I G+ ELG+ V 
Sbjct: 522 IEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVG 581

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
             L  ++P ++G YI+++N+Y+ A +WD+A +VR  MK +G++K+PG S IE  G +  F
Sbjct: 582 KRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRF 641

Query: 427 VAKDTSGDKSEQIYLILERL-------LGLMREEGYVLLDEVEEESAY 467
           VA D S  +S +IY  L  +       +G   + G VLLD  EE+  +
Sbjct: 642 VAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEH 689



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 41/237 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNSM+A Y+Q G   E  ALF +M    V +P   TVVS+L AC     +  
Sbjct: 349 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLGALDK 407

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H ++ ++ I+++  +  AL+ MYAKCG +  A  + + M  KD ++++ II+G  +
Sbjct: 408 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 467

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V++A  LF                               +EM+ +GV PN +T  +I
Sbjct: 468 HGNVKEAQQLF-------------------------------KEMKEAGVEPNDITFVAI 496

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            S  SH   +  G+++       Y ++ + +        +ID  A+ GFL  A  + 
Sbjct: 497 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH----YGCVIDLLARAGFLEEAMELI 549



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 107/228 (46%), Gaps = 10/228 (4%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           F+  A  +F  ++ P  S +N++I  L  +      L L   M  SG++P+ +T   +  
Sbjct: 144 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 203

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S    G  +H + VK+ ++ + Y+ +++I  YA    L  A+++F+    R ++ 
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 263

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W A+I  Y  H +   A  +F+ M+      D +++  +++  A  G +D+A  +F+ M 
Sbjct: 264 WNAMIDGYVKHVEMGHARMVFDRMVCR----DVISWNTMINGYAIVGKIDEAKRLFDEMP 319

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
                + ++  +  M+    +   + +A    S+MP +     W ++L
Sbjct: 320 -----ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS-WNSML 361


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 173/501 (34%), Positives = 261/501 (52%), Gaps = 39/501 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   WN+MI  Y      +E  +LF +M +   +  D  ++  V+QACG+  D   G ++
Sbjct: 68  DTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKL 127

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++  +  DL++  ALI MYAK G ++ AR +LDEM+  D V Y+ +++ Y+  G +
Sbjct: 128 HTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEI 187

Query: 125 EKAMDLFQVMKRPGLSTWNAVISG-------------------------------LVQNN 153
             A DLF  M    L +WN +I G                                 +  
Sbjct: 188 NLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKAR 247

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
           +    L L  EMQ + V P+ VT+ S+ S       L  GK IH    +NR + ++ + T
Sbjct: 248 QSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGT 307

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           +++D YAK G +  + RVF+    R +  W+A+I   A HG    A+  F++M++  I+P
Sbjct: 308 SLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKP 367

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           + VTF  VLSAC+H GLVD+ W  F +MS  Y + P +EHY C+V +L RA R+ EA E 
Sbjct: 368 NDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMEL 427

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           +  MP  P A VW ALL    I  +VE+ +    +L E+EP   GNY++++N+YSQA  W
Sbjct: 428 IKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEW 487

Query: 394 DEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           D+   VR  MK   + K+PG S IE    +  FVA D S  +S++I  +L  +   ++  
Sbjct: 488 DKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKAN 547

Query: 454 GYVLL--------DEVEEESA 466
           GY  L        DE E+E+A
Sbjct: 548 GYAPLTASVLQDFDEKEKENA 568



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RD++SW+SMIA Y++     E   LF EM  + VL PD VT+VSVL ACG    +  G 
Sbjct: 230 ERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVL-PDKVTMVSVLSACGDVGALGMGK 288

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H  +  + I++DL +  +L+ MYAKCG +D +  + + M+++D  ++SA+I G   HG
Sbjct: 289 MIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHG 348

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           F E A+D F  M    +   +    G++    H  ++D
Sbjct: 349 FGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVD 386



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 159/367 (43%), Gaps = 53/367 (14%)

Query: 42  GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS---LDYARA 98
           G  V+S+LQ   + + I+   ++H  +I++ +  + ++   L+     C S   L YAR+
Sbjct: 3   GKKVMSLLQNATKLNQII---QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARS 59

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158
           + DE+   D   ++ +I  Y+     +++M LF  M                   RH+  
Sbjct: 60  VFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQM-------------------RHQEC 100

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           + +           ++ ++S +        +   G+++H   +K     +++V TA+I+ 
Sbjct: 101 IPI-----------DSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEM 149

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           YAK G +  A+ + D      L+ +  +++ Y   G+ + A  LF+ M     + D V++
Sbjct: 150 YAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRM----PERDLVSW 205

Query: 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
             ++   A  G V  A  +F+    +  I      ++ M+   ++AR+ +EA     +M 
Sbjct: 206 NTMIHGHASLGDVGTAKKLFDRTCERDLIS-----WSSMIAAYAKARQSNEALRLFHEMQ 260

Query: 339 ---VKPSAKVWGALLYGASISGDVELGKFV--CDHLFEIEPE-NTGNYIIMANLYSQAGR 392
              V P      ++L      G + +GK +  C     IE +   G  ++  ++Y++ G 
Sbjct: 261 LANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLV--DMYAKCGD 318

Query: 393 WDEADRV 399
            D + RV
Sbjct: 319 IDNSLRV 325


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 260/468 (55%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY + G Y+E   LF+EM+ + V RPD  T+V+V+ A  +S  I  G +
Sbjct: 158 KDVVSWNAMISGYVETGNYKEALELFKEMMKTNV-RPDESTMVTVISASARSGSIELGRQ 216

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI  Y+KCG ++ A  L   +S KD +S             
Sbjct: 217 VHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVIS------------- 263

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 264 ------------------WNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHA 305

Query: 184 FSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID Y+K G +  A +VF+    +SL 
Sbjct: 306 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLP 365

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A+ A  +F+ M  N I+PD +TF  +LSAC+H+G++D    IF +M
Sbjct: 366 AWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSM 425

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y I P +EHY CM+ +L  +    EA E +S M ++P   +W +LL    + G+VEL
Sbjct: 426 THNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVEL 485

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+    +LF+IEP N G+Y++++N+Y+ AGRW+E  R+R  + + G+ K+PG S IE   
Sbjct: 486 GEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDS 545

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L++E G+V     +L E+EEE
Sbjct: 546 VVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEE 593



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 214/442 (48%), Gaps = 50/442 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L P+  T   +L++C +      G+++
Sbjct: 27  NLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKLKASKEGLQI 85

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++   ++DL++  +LI MY +   L+ A  + D  S +D VSY+A+++GY   G++
Sbjct: 86  HGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYI 145

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A ++F  +    + +WNA+ISG V+   ++  L+L +EM  + VRP+  T+ ++ S  
Sbjct: 146 ESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISAS 205

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +++ G+++H +   + +  N+ +  A+ID Y+K G +  A  +F     + +I W 
Sbjct: 206 ARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWN 265

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------------ 292
            +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D            
Sbjct: 266 ILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKR 325

Query: 293 -------------------------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
                                     A  +FN+M     +  S+  +  M+   +   R 
Sbjct: 326 LKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-----LHKSLPAWNAMIFGFAMHGRA 380

Query: 328 SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFV---CDHLFEIEPENTGNYI 381
           + A +  S+M    +KP    +  LL   S +G ++LG+ +     H ++I P+   +Y 
Sbjct: 381 NAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPK-LEHYG 439

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            M +L   +G + EA+ +   M
Sbjct: 440 CMIDLLGHSGLFKEAEEMISTM 461



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 42/262 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN +I GY+    Y+E   LF+EML S    P+ VT++S+L AC     I  
Sbjct: 256 LSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGE-SPNDVTMLSILHACAHLGAIDI 314

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G  +H + I+  +K    + NA      LI MY+KCG ++ A  + + M  K   +++A+
Sbjct: 315 GRWIHVY-IDKRLK---GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAM 370

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I G+ +HG    A D+F  M++  +   +    GL+    H  +LDL R           
Sbjct: 371 IFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRH---------- 420

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
                IF   +H  N K   ++  Y               +ID    +G    A+ +   
Sbjct: 421 -----IFRSMTH--NYKITPKLEHYG-------------CMIDLLGHSGLFKEAEEMIST 460

Query: 235 FKGRSL-IIWTAIISAYAAHGD 255
                  +IW +++ A   HG+
Sbjct: 461 MTMEPDGVIWCSLLKACKMHGN 482



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 135/284 (47%), Gaps = 11/284 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   +    + L L   M + G+ PN+ T   +    + 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G +IHG+ +K  Y+ ++YV T++I  Y +   L  A +VFDR   R ++ +TA+
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           ++ YA+ G    A ++F+E+       D V++ A++S    +G   +A ++F  M  +  
Sbjct: 136 VTGYASRGYIESARNMFDEI----PVKDVVSWNAMISGYVETGNYKEALELFKEMM-KTN 190

Query: 307 IQPSVEHYACMVGVLSRARRIS---EATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++P       ++   +R+  I    +   +++      + K+  AL+   S  G++E   
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA- 249

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
             C     +  ++  ++ I+   Y+    + EA  + ++M  SG
Sbjct: 250 --CGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSG 291


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 158/423 (37%), Positives = 249/423 (58%), Gaps = 2/423 (0%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN++I  Y+     E    +F +ML++ VL PD  T    L++CG  S +  G ++H  V
Sbjct: 76  WNTIIRAYANSPTPEAALTIFHQMLHASVL-PDKYTFTFALKSCGSFSGVEEGRQIHGHV 134

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA- 127
           +++ +  DL+I N LI +YA CG ++ AR LLD M ++D VS++A++S Y   G +E A 
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAS 194

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             +F       + +WNA+I+G     R   VL L  +MQ +GV+P+  T+ S+ S  +H 
Sbjct: 195 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 254

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L  G+ +H Y  KN    + +VATA++D Y+K G +  A  VF+    + +  W +II
Sbjct: 255 GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSII 314

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           S  + HG    A+ +F+EML  G +P+ VTF  VLSAC+ +GL+D+  ++FN M   +GI
Sbjct: 315 SGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGI 374

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
           QP++EHY CMV +L R   + EA E V KMP K ++ VW +LL      G+VEL + V  
Sbjct: 375 QPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQ 434

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFV 427
            L E+ P+ + +++ ++N+Y+  GRW +   VR++M+  G+ K PG S IE  G +  F+
Sbjct: 435 KLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFL 494

Query: 428 AKD 430
           A +
Sbjct: 495 AGE 497



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 34/266 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSWN+MI GYS  G + E   LF +M ++ V +PD  T+VSVL AC     +  G  
Sbjct: 204 KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV-KPDNCTLVSVLSACAHVGALSQGEW 262

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH ++ ++ I +D ++  AL+ MY+KCGS++ A  + +    KD  ++++IISG   HG 
Sbjct: 263 VHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGS 322

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            + A+ +F                                EM   G +PN VT   + S 
Sbjct: 323 GQHALQIFS-------------------------------EMLVEGFKPNEVTFVCVLSA 351

Query: 184 FSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLI 241
            S    L  G+E+    V  +     I     ++D   + G L  A+ +  +   + + +
Sbjct: 352 CSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASV 411

Query: 242 IWTAIISAYAAHGDASKAVSLFNEML 267
           +W +++ A   HG+   A  +  ++L
Sbjct: 412 VWESLLGACRNHGNVELAERVAQKLL 437



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 19/223 (8%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG---AQRVFDRFKGRSLIIWTAIISAYA 251
           + H + +K+    + + A+ +I + +          A  +F R    +  +W  II AYA
Sbjct: 25  QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-----NAMSGQYG 306
                  A+++F++ML+  + PD  TFT  L +C     V++   I        +     
Sbjct: 85  NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           IQ ++ H     G +  AR +      + +M ++     W ALL   +  G +EL     
Sbjct: 145 IQNTLIHLYASCGCIEDARHL------LDRM-LERDVVSWNALLSAYAERGLMELAS--- 194

Query: 367 DHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             +F   P +N  ++  M   YS AGR+ E   + E M+ +G+
Sbjct: 195 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV 237


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 258/471 (54%), Gaps = 40/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           MS RDIV+WNS+I GY+Q G  Y      ++  L++  + PD  T+V V+ AC   +D+ 
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA--INPDAGTMVGVVPACALLNDLD 548

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
            G  +H  +++   + D  + NALI MYAKCGSL  A  L ++    KDEV         
Sbjct: 549 QGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV--------- 599

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                 TWN +I+  +QN   +  +    +M+     PN+VT  
Sbjct: 600 ----------------------TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFV 637

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    ++ +  + G   H   ++  +  N  V  ++ID YAK G L  ++++F+    +
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHK 697

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + W A++S YA HG   +A++LF+ M  + +Q D V+F +VLSAC H GLV++   IF
Sbjct: 698 DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIF 757

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           ++MS +Y I+P +EHYACMV +L RA    E   F+  MPV+P A VWGALL    +  +
Sbjct: 758 HSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSN 817

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V+LG+   DHL ++EP N  ++++++++Y+Q+GRW +A + R +M + GL K PG SW+E
Sbjct: 818 VKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 877

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F   D S  + E ++L+   LL  M + GYV     +L  VEEE
Sbjct: 878 LKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEE 928



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 138/286 (48%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSW +M+AGY+  G + E   LF +M    V R + V+ VS   A  ++ D+  
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV-RINKVSAVSAFLAAAETIDLEK 347

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   ++  I  D+ +   L+ MYAKCG                             
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGE---------------------------- 379

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               EKA  LF  ++   L  W+A+I+ LVQ    E  L L +EMQ   ++PN VT+ SI
Sbjct: 380 ---TEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S LK GK IH + VK   D ++   TA++  YAK GF   A   F+R   R +
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + W ++I+ YA  GD   A+ +F ++  + I PD  T   V+ ACA
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 177/359 (49%), Gaps = 38/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+V+WN+MIAG SQ     E    FR M    V  P  V+++++     + S+I  
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV-EPSSVSLLNLFPGICKLSNIEL 248

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H +V          + N LI +Y+KCG +D AR + D+M D+D+VS+  +++GY  
Sbjct: 249 CRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 121 HG-FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +G FVE                                VL+L  +M+   VR N V+  S
Sbjct: 307 NGCFVE--------------------------------VLELFDKMKLGNVRINKVSAVS 334

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            F   +   +L+ GKEIHG A++ R D +I VAT ++  YAK G    A+++F   +GR 
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+ W+AII+A    G   +A+SLF EM N  ++P+ VT  ++L ACA   L+     I +
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI-H 453

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             + +  +   +     +V + ++    + A    ++M  +     W +L+ G +  GD
Sbjct: 454 CFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 175/355 (49%), Gaps = 35/355 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+W+++IA   Q G+ EE  +LF+EM N   ++P+ VT++S+L AC   S +  G  
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADLSLLKLGKS 451

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F +++ +  DL    AL+ MYAKC                               GF
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKC-------------------------------GF 480

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+  F  M    + TWN++I+G  Q       +D+  +++ S + P+A T+  +   
Sbjct: 481 FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLII 242
            +  ++L  G  IHG  VK  ++ + +V  A+ID YAK G L  A+ +F++    +  + 
Sbjct: 541 CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVT 600

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  II+AY  +G A +A+S F++M      P+ VTF +VL A A+     +    F+A  
Sbjct: 601 WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM-AFHACI 659

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            Q G   +      ++ + ++  ++  + +  ++M  K +   W A+L G ++ G
Sbjct: 660 IQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS-WNAMLSGYAVHG 713



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 34/291 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + WNSMI  Y++   Y E   ++  M+    L PD  T   VL+AC  + ++  G+  H 
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKG-LEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +    ++ D++I   L+ MY+K G L  AR + D+M  +D V+                
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA---------------- 197

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                          WNA+I+GL Q+      +D  R MQ  GV P++V++ ++F     
Sbjct: 198 ---------------WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICK 242

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            SN++  + IHGY    R D +  V+  +ID Y+K G +  A+RVFD+   +  + W  +
Sbjct: 243 LSNIELCRSIHGYVF--RRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTM 300

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           ++ YA +G   + + LF++M    ++ + V+  +   A A +  ++K  +I
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K   S + +I+ Y +    + A  +F     P    WN++I    ++ ++   L++   M
Sbjct: 61  KHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM 120

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              G+ P+  T + +    +   NL+ G   HG   +   +R++++   ++D Y+K G L
Sbjct: 121 VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDL 180

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
             A+ VFD+   R ++ W A+I+  +   D  +AV  F  M   G++P  V+ 
Sbjct: 181 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L S   +L    +IH   + + +  + +  T +I+ Y+       A+ VFD     S I+
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHH-HSITHLINLYSLFHKCDLARSVFDSTPNPSRIL 96

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-GLVDKAWDIFNAM 301
           W ++I AY      ++A+ ++  M+  G++PD  TFT VL AC  +  L +  W  F+  
Sbjct: 97  WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVW--FHGE 154

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             + G++  V   A +V + S+   +  A E   KMP K     W A++ G S S D
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSED 210


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 252/446 (56%), Gaps = 32/446 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN+ ++G    G Y+    +F  ML    + P+  T +S+L +C    D+ +
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI-PNMYTFISILGSCSCLFDVHY 534

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  +I++ +  + ++C ALI MYAKC  L+ A    + +S +D             
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD------------- 581

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L TW  +I+   Q N+ E  L+  R+MQ  GV+PN  T++  
Sbjct: 582 ------------------LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S  ++L+GG+++H    K+ +  +++V +A++D YAK G +  A+ +F+    R  
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  II  YA +G  +KA++ F  ML+ GI PD VTFT +LSAC+H GLV++  + FN+
Sbjct: 684 IAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNS 743

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P+V+H ACMV +L R  +  E  +F+ KM +  +A +W  +L  + +  ++ 
Sbjct: 744 MYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLV 803

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LFE++PE   +YI+++N+++  GRWD+  RVR  M   G+ K PG SW+E +
Sbjct: 804 LGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEAN 863

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
           G + +FV+ D S  + ++I+L L+ L
Sbjct: 864 GQVHTFVSHDYSHPQIQEIHLKLDEL 889



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K DIV W+++I    Q G  EE   LF  M     L P+  T+ S+L A   + ++ +
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL-PNQYTICSLLSAATNTGNLQY 433

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +   + D+ + NAL+ MY K                               
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMK------------------------------- 462

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V     L++ M    L +WNA +SGL     ++  L +   M   G  PN  T  SI
Sbjct: 463 NGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISI 522

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S   ++  G+++H + +KN+ D N +V TA+ID YAK  +L  A   F+R   R L
Sbjct: 523 LGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDL 582

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             WT II+ YA      KA++ F +M   G++P+  T    LS C+
Sbjct: 583 FTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW ++I G    GF  +   LF+EM N  ++ P+  T+ + L+AC     +  
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIM-PNEFTLATGLKACSLCMALDL 231

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +  + +DL++ +AL+ +YAKCG ++ A  +   M ++++V           
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDV----------- 280

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +++G  Q      VL L   M    V+ N  T++++
Sbjct: 281 --------------------TWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTV 320

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++  NLK G+ IH   +K  Y+ N ++   ++D Y+K G    A  VF   K   +
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I+     G + +++ LF+ M      P+  T  ++LSA  ++G +     I +A
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI-HA 439

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +YG +  V     +V +  +   + + T+    M V      W A L G    G
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCG 495



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ V+WN ++ GY+Q G       LF  M+   V + +  T+ +VL+ C  S ++  
Sbjct: 274 MPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDV-KCNEFTLTTVLKGCANSKNLKQ 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+ +I+   + + +I   L+ MY+KCG                             
Sbjct: 333 GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG----------------------------- 363

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A+ +F+ +K+P +  W+A+I+ L Q  + E  + L   M+     PN  TI S+
Sbjct: 364 --LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSL 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++  NL+ G+ IH    K  ++ ++ V+ A++  Y K G +H   ++++    R L
Sbjct: 422 LSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDL 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           I W A +S     G   + +++F  ML  G  P+  TF ++L +C+
Sbjct: 482 ISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 39/317 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEMS 104
           S+L+ C     +     +H  +++  I  D  LW+  +L+ +YAKC    YAR +L +M 
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWV--SLVNVYAKCRYSAYARLVLAKMP 174

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D+D VS++A+I G +  GF   ++ LFQ                               E
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQ-------------------------------E 203

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           MQ  G+ PN  T+++     S    L  GK++H  A K     +++V +A++D YAK G 
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A ++F     ++ + W  +++ YA  GD +  + LF  M+   ++ +  T T VL  
Sbjct: 264 IELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSA 343
           CA+S  + K   + +++  + G + + E   C +V + S+     +A   V K   KP  
Sbjct: 324 CANSKNL-KQGQVIHSLIIKCGYEGN-EFIGCGLVDMYSKCGLAIDAIG-VFKTIKKPDI 380

Query: 344 KVWGALLYGASISGDVE 360
            VW AL+      G  E
Sbjct: 381 VVWSALITCLDQQGQSE 397


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 252/446 (56%), Gaps = 32/446 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN+ ++G    G Y+    +F  ML    + P+  T +S+L +C    D+ +
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI-PNMYTFISILGSCSCLFDVHY 534

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  +I++ +  + ++C ALI MYAKC  L+ A    + +S +D             
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD------------- 581

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L TW  +I+   Q N+ E  L+  R+MQ  GV+PN  T++  
Sbjct: 582 ------------------LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S  ++L+GG+++H    K+ +  +++V +A++D YAK G +  A+ +F+    R  
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  II  YA +G  +KA++ F  ML+ GI PD VTFT +LSAC+H GLV++  + FN+
Sbjct: 684 IAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNS 743

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P+V+H ACMV +L R  +  E  +F+ KM +  +A +W  +L  + +  ++ 
Sbjct: 744 MYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLV 803

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LFE++PE   +YI+++N+++  GRWD+  RVR  M   G+ K PG SW+E +
Sbjct: 804 LGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEAN 863

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
           G + +FV+ D S  + ++I+L L+ L
Sbjct: 864 GQVHTFVSHDYSHPQIQEIHLKLDEL 889



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K DIV W+++I    Q G  EE   LF  M     L P+  T+ S+L A   + ++ +
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL-PNQYTICSLLSAATNTGNLQY 433

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +   + D+ + NAL+ MY K                               
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMK------------------------------- 462

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V     L++ M    L +WNA +SGL     ++  L +   M   G  PN  T  SI
Sbjct: 463 NGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISI 522

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S   ++  G+++H + +KN+ D N +V TA+ID YAK  +L  A   F+R   R L
Sbjct: 523 LGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDL 582

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             WT II+ YA      KA++ F +M   G++P+  T    LS C+
Sbjct: 583 FTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW ++I G    GF  +   LF+EM N  ++ P+  T+ + L+AC     +  
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIM-PNEFTLATGLKACSLCMALDL 231

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +  + +DL++ +AL+ +YAKCG ++ A  +   M ++++V           
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDV----------- 280

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +++G  Q      VL L   M    V+ N  T++++
Sbjct: 281 --------------------TWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTV 320

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++  NLK G+ IH   +K  Y+ N ++   ++D Y+K G    A  VF   K   +
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I+     G + +++ LF+ M      P+  T  ++LSA  ++G +     I +A
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI-HA 439

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +YG +  V     +V +  +   + + T+    M V      W A L G    G
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCG 495



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ V+WN ++ GY+Q G       LF  M+   V + +  T+ +VL+ C  S ++  
Sbjct: 274 MPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDV-KCNEFTLTTVLKGCANSKNLKQ 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+ +I+   + + +I   L+ MY+KCG                             
Sbjct: 333 GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG----------------------------- 363

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A+ +F+ +K+P +  W+A+I+ L Q  + E  + L   M+     PN  TI S+
Sbjct: 364 --LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSL 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++  NL+ G+ IH    K  ++ ++ V+ A++  Y K G +H   ++++    R L
Sbjct: 422 LSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDL 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           I W A +S     G   + +++F  ML  G  P+  TF ++L +C+
Sbjct: 482 ISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 39/317 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEMS 104
           S+L+ C     +     +H  +++  I  D  LW+  +L+ +YAKC    YAR +L +M 
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWV--SLVNVYAKCRYSAYARLVLAKMP 174

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D+D VS++A+I G +  GF   ++ LFQ                               E
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQ-------------------------------E 203

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           MQ  G+ PN  T+++     S    L  GK++H  A K     +++V +A++D YAK G 
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A ++F     ++ + W  +++ YA  GD +  + LF  M+   ++ +  T T VL  
Sbjct: 264 IELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSA 343
           CA+S  + K   + +++  + G + + E   C +V + S+     +A   V K   KP  
Sbjct: 324 CANSKNL-KQGQVIHSLIIKCGYEGN-EFIGCGLVDMYSKCGLAIDAIG-VFKTIKKPDI 380

Query: 344 KVWGALLYGASISGDVE 360
            VW AL+      G  E
Sbjct: 381 VVWSALITCLDQQGQSE 397


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 259/473 (54%), Gaps = 41/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+V+WNS+I+G+ QGG       +F  M +S V  PD +T++S+  A  Q  DI  
Sbjct: 231 MSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGV-SPDVLTLLSLASAIAQCGDICG 289

Query: 61  GMEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  VH +++     + D+   NA++ MYAK   ++ A+ + D M  +D VS         
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS--------- 340

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTIS 178
                                 WN +I+G +QN      + +   MQ   G++P   T  
Sbjct: 341 ----------------------WNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFV 378

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+   +SH   L+ G  +H  ++K   + ++YV T +ID YAK G L  A  +F++   R
Sbjct: 379 SVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRR 438

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S   W A+IS    HG  +KA+SLF++M   GI PD VTF ++L+AC+H+GLVD+  + F
Sbjct: 439 STGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFF 498

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N M   YGI+P  +HYACMV +  RA ++ +A +F+  MP+KP + +WGALL    I G+
Sbjct: 499 NMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGN 558

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+GK    +LFE++P+N G Y++M+N+Y++ G+WD  D VR  ++   L K PG S IE
Sbjct: 559 VEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIE 618

Query: 419 CSGGLQSFVAKDTSG--DKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F + +      + E+I   L  LL  +R  GYV     +L +VEE+
Sbjct: 619 VKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEED 671



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 180/359 (50%), Gaps = 36/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ +WN+M++G  +     E   LF  M+   V   D VTV SVL  C    D   
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVA-GDAVTVSSVLPMCVLLGDRAL 188

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            + +H + ++  +  +L++CNA+I +Y K G L+  R + D MS +D V++++IISG+  
Sbjct: 189 ALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQ 248

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V  A+++F  M+                                SGV P+ +T+ S+
Sbjct: 249 GGQVASAVEMFCGMRD-------------------------------SGVSPDVLTLLSL 277

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +   ++ GG+ +H Y V+  +D  +I    AI+D YAK   +  AQR+FD    R 
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRD 337

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + W  +I+ Y  +G AS+A+ +++ M  + G++P   TF +VL A +H G + +   + 
Sbjct: 338 AVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRM- 396

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +A+S + G+   V    C++ + ++  ++ EA     + P + S   W A++ G  + G
Sbjct: 397 HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHG 454



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 143/315 (45%), Gaps = 25/315 (7%)

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D  +  A++  Y+  G V  A   F  M+   +  WNA++SGL +N R    + L   M 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             GV  +AVT+SS+  +     +      +H YAVK+  D  ++V  A+ID Y K G L 
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             ++VFD    R L+ W +IIS +   G  + AV +F  M ++G+ PD +T  ++ SA A
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 287 HSG-----------LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
             G           +V + WD+ + ++G             +V + ++  +I  A     
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGN-----------AIVDMYAKLSKIEAAQRMFD 331

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRW 393
            MPV+  A  W  L+ G   +G       V DH+ + E      G ++ +   YS  G  
Sbjct: 332 SMPVR-DAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGAL 390

Query: 394 DEADRVREQMKESGL 408
            +  R+     ++GL
Sbjct: 391 QQGTRMHALSIKTGL 405


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 252/450 (56%), Gaps = 8/450 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNS+I  Y Q G   E   LF EM+ +    PD VT+ SV+ AC   +    
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFF-PDEVTLSSVMSACAGLAAERE 270

Query: 61  GMEVH-NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G +VH + V    ++ D+ + NAL+ MYAKCG    AR + D M  +  VS ++I++GY 
Sbjct: 271 GRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYA 330

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               VE A  +F  M    +  WN +I+   QN   E  + L  +++   + P   T  +
Sbjct: 331 KSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGN 390

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKN--RYD----RNIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +   + + L+ G++ H + +K   R+D     +++V  +++D Y KTG +    +VF+
Sbjct: 391 VLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFE 450

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R  + W A+I  YA +G A  A+ LF  ML +   PD VT   VLSAC HSGLVD+
Sbjct: 451 RMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDE 510

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F+ M+  +GI PS +HY CMV +L RA  + EA E +  MP +P + +W +LL   
Sbjct: 511 GRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGAC 570

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  +VELG+     LFE++PEN+G Y++++N+Y++ G+W +  RVR  MK+ G++K PG
Sbjct: 571 RLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPG 630

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
            SWIE    +  F+A+D       +I+  L
Sbjct: 631 CSWIEIGSKMNVFLARDNRHPCRNEIHSTL 660



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 177/346 (51%), Gaps = 6/346 (1%)

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++S +  + ++ N L+  YA+ G L  AR + D +  ++  SY+A++S Y   G  
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA--VLDLVREMQASGVRPNAVTISSIFS 182
           ++A  LF+ +  P   ++NAV++ L ++ R  A   L  +  M A     NA + +S  S
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   +L+ G+++HG   ++ +  ++++ TA++D YAK      A+RVFD    R+++ 
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVS 219

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++I+ Y  +G   +A+ LF EM+  G  PD VT ++V+SACA      +   +   M 
Sbjct: 220 WNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMV 279

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +  ++  +     +V + ++  R  EA      MP + S     ++L G + S +VE  
Sbjct: 280 KRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR-SVVSETSILAGYAKSANVEDA 338

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + V   + E   +N   + ++   Y+Q G  +EA R+  Q+K   +
Sbjct: 339 QVVFSQMVE---KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI 381



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 141/314 (44%), Gaps = 64/314 (20%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL-FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D  S+N+++A  ++ G      AL F   +++     +  +  S L AC    D+  G +
Sbjct: 113 DQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQ 172

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V  S    D+ I  AL+ MYAKC     AR + D M +++ VS++++I+ Y  +G 
Sbjct: 173 VHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGP 232

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V +A+ LF                                EM A+G  P+ VT+SS+ S 
Sbjct: 233 VGEALVLFV-------------------------------EMMATGFFPDEVTLSSVMSA 261

Query: 184 FSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS--- 239
            +  +  + G+++H + VK +R   ++ +  A++D YAK G    A+ +FD    RS   
Sbjct: 262 CAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVS 321

Query: 240 ----------------------------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
                                       +I W  +I+AYA +G+  +A+ LF ++  + I
Sbjct: 322 ETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI 381

Query: 272 QPDPVTFTAVLSAC 285
            P   T+  VL+AC
Sbjct: 382 WPTHYTYGNVLNAC 395



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S +  L     +L G +  HG  +K+      ++   ++ TYA+ G L  A+RVFD    
Sbjct: 21  SPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPL 80

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           R+   + A++SAYA  G   +A +LF  + +    PD  ++ AV++A A  G
Sbjct: 81  RNTFSYNALLSAYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHG 128


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 260/469 (55%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN++I G +Q G   +   L+ +M  S ++ PD  T+ S+L A      + +
Sbjct: 297 METKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLV-PDWFTIGSLLLASAHLKSLRY 355

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH FV+   +++D +I  +L+ +Y  CG    AR L D M +K  VS          
Sbjct: 356 GKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS---------- 405

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  QN   E  L L R++ + G +P+ + + S+
Sbjct: 406 ---------------------WNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSV 444

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S L+ GKE H YA+K     +++VA + ID YAK+G +  ++ VFD  K + L
Sbjct: 445 LGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDL 504

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W AII+AY  HGD  +++ LF  M   G  PD  TF  +L+ C+H+GLV++    FN 
Sbjct: 505 ASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNE 564

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+P +EHYAC++ +L RA R+ +A   V +MP +P ++VW +LL      G++E
Sbjct: 565 MQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELE 624

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V + L E+EP+N  NY+ ++NLY+ +GRWD+  RVR+ +K+ GL K  G SWIE  
Sbjct: 625 IGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELG 684

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           G + SFVA D    +S+++ +   +L   M + GY      +L +V+EE
Sbjct: 685 GKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEE 733



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 33/289 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R++VSWNS+I+G+S+ GF ++C  +  EM+     L PD  T+V+VL  C +  D+ 
Sbjct: 92  MPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQ 151

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G+ +H   ++  +  D+ + N+L+ MY+KCG L  A+ L D+ + K+ VS++ +I G  
Sbjct: 152 MGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLC 211

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTIS 178
             G++ +A +LF                               REMQ    +  N VT+ 
Sbjct: 212 TKGYIFEAFNLF-------------------------------REMQMQEDIEVNEVTVL 240

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +I       S L+  KE+HGY++++ +  +  VA   +  YAK G L  A+RVF   + +
Sbjct: 241 NILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETK 300

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           ++  W A+I   A +GD  KA++L+ +M  +G+ PD  T  ++L A AH
Sbjct: 301 TVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 202/459 (44%), Gaps = 94/459 (20%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++++ VSWN+MI G    G+  E   LFREM     +  + VTV+++L AC + S +   
Sbjct: 196 NRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSL 255

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H + I    + D  + N  +  YAKCG L  A          + V YS         
Sbjct: 256 KELHGYSIRHGFQYDELVANGFVAAYAKCGMLICA----------ERVFYS--------- 296

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                       M+   +++WNA+I G  QN      L+L  +M  SG+ P+  TI S+ 
Sbjct: 297 ------------METKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLL 344

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +H  +L+ GKE+HG+ +++  + + ++  +++  Y   G    A+ +FD  + +S +
Sbjct: 345 LASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSV 404

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC---------------- 285
            W A+IS Y+ +G    A+ LF +++++G QP  +   +VL AC                
Sbjct: 405 SWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYA 464

Query: 286 -------------------AHSGLVDKAWDIF-----------NAMSGQYGIQPSVEHYA 315
                              A SG + ++  +F           NA+   YG+    E   
Sbjct: 465 LKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEES- 523

Query: 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG-KFVCD--HLFEI 372
             + +  R R++ +           P    +  +L   S +G VE G K+  +  +   I
Sbjct: 524 --IELFERMRKVGQM----------PDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGI 571

Query: 373 EPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
           EP+   +Y  + ++  +AGR D+A R+  +M E   +++
Sbjct: 572 EPK-LEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRV 609



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 50/348 (14%)

Query: 21  FYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80
            Y +   +F +++       D  T   V++AC  S D   G  +H  VI+  + +D+++ 
Sbjct: 10  LYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVG 69

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           NALI MY K                                GFV+ A+ +F  M    L 
Sbjct: 70  NALIAMYGK-------------------------------FGFVDAAVKVFHYMPVRNLV 98

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQA--SGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           +WN++ISG  +N   +   D++ EM A   G+ P+  T+ ++  + +   +++ G  IHG
Sbjct: 99  SWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHG 158

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
            AVK     ++ V  +++D Y+K G+L  AQ +FD+   ++ + W  +I      G   +
Sbjct: 159 LAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFE 218

Query: 259 AVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS------- 310
           A +LF EM +   I+ + VT   +L AC     + ++    +  S ++G Q         
Sbjct: 219 AFNLFREMQMQEDIEVNEVTVLNILPACLEISQL-RSLKELHGYSIRHGFQYDELVANGF 277

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           V  YA   G+L  A R+  + E         +   W AL+ G + +GD
Sbjct: 278 VAAYA-KCGMLICAERVFYSME-------TKTVNSWNALIGGCAQNGD 317


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 247/448 (55%), Gaps = 5/448 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           W ++I G++  G +E+    + +ML   V  P+  T  S+L+ C     I  G  +H+  
Sbjct: 43  WTAIIHGHALRGLHEQALNFYAQMLTQGV-EPNAFTFSSILKLC----PIEPGKALHSQA 97

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     DL++   L+ +YA+ G +  A+ L D M +K  VS +A+++ Y  HG ++ A 
Sbjct: 98  VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 157

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M+      WN +I G  QN      L L R M  +  +PN VT+ S+ S      
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L+ G+ +H Y   N    N++V TA++D Y+K G L  A+ VFD+   + ++ W ++I 
Sbjct: 218 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 277

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA  G + +A+ LF  M   G+ P  +TF  +LSAC HSG V + WDIFN M  +YGI+
Sbjct: 278 GYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 337

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P +EHY CMV +L RA  + +A E V  M ++P   +WG LL    + G + LG+ + + 
Sbjct: 338 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 397

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           L +    N+G YI+++N+Y+  G WD   R+R  MK+SG+ K PG S IE +  +  F+A
Sbjct: 398 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLA 457

Query: 429 KDTSGDKSEQIYLILERLLGLMREEGYV 456
              +  K ++IY++LE + G ++  GY 
Sbjct: 458 GGLNHPKRKEIYMMLEEINGWLKSHGYT 485



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 148/287 (51%), Gaps = 20/287 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V WN MI GY+Q G   E   LFR ML +   +P+ VTV+SVL ACGQ   +  
Sbjct: 163 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA-KPNEVTVLSVLSACGQLGALES 221

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++  + I+ ++ +  AL+ MY+KCGSL+ AR + D++ DKD V+++++I GY +
Sbjct: 222 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 281

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL----DLVREMQAS-GVRPNAV 175
            GF ++A+ LF+ M R GL   N    G++    H   +    D+  +M+   G+ P   
Sbjct: 282 XGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 341

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG----AQRV 231
               + +L     +++   E+    VKN    NI     +  T      LHG     +++
Sbjct: 342 HYGCMVNLLGRAGHVEQAYEL----VKN---MNIEPDPVLWGTLLGACRLHGKIALGEKI 394

Query: 232 FDRFKGRSLI---IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            +    ++L     +  + + YAA G+      L   M ++G++ +P
Sbjct: 395 VELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 441



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 44/284 (15%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           DK + SY+++       G ++ ++ LF   + P +  W A+I G      HE  L+   +
Sbjct: 13  DKLQRSYASL-------GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQ 65

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   GV PNA T SSI  L      ++ GK +H  AVK  +D ++YV T ++D YA+ G 
Sbjct: 66  MLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGD----------------------------- 255
           +  AQ++FD    +SL+  TA+++ YA HG+                             
Sbjct: 122 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 181

Query: 256 --ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
              ++A+ LF  ML    +P+ VT  +VLSAC   G ++    + + +    GIQ +V  
Sbjct: 182 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHV 240

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +V + S+   + +A     K+  K     W +++ G ++ G
Sbjct: 241 GTALVDMYSKCGSLEDARLVFDKIDDK-DVVAWNSMIVGYAMXG 283



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
           +YA  G L  +  +F R +  S+  WTAII  +A  G   +A++ + +ML  G++P+  T
Sbjct: 18  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 77

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           F+++L  C       +     ++ + + G    +     ++ V +R   +  A +    M
Sbjct: 78  FSSILKLCP-----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           P K    +  A+L   +  G+++  + + D +   E  +   + +M + Y+Q G  +EA
Sbjct: 133 PEKSLVSL-TAMLTCYAKHGELDAARVLFDGM---EERDGVCWNVMIDGYTQNGMPNEA 187


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 162/490 (33%), Positives = 275/490 (56%), Gaps = 44/490 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V+WN +I+GY Q G  E+      +++    L+ D VT+ +++ A  ++ ++ F
Sbjct: 315 MFDKDVVTWNLLISGYVQQGLVED-AIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKF 373

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV  + I   +  D+ + +  + MYAKCGS+  A+ + D   +KD + ++ +++ Y  
Sbjct: 374 GKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQ 433

Query: 121 HGFVEKAMDLFQVMK---------------------------------------RPGLST 141
            G   +A+ LF  M+                                        P L +
Sbjct: 434 SGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLIS 493

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           W  +++G+VQN   E  +  +R+MQ SG+RPNA +I+   S  ++ ++L  G+ IHGY +
Sbjct: 494 WTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYII 553

Query: 202 KN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +N R+  ++ + T+++D YAK G ++ A+RVF       L ++ A+ISAYA +G+  +A+
Sbjct: 554 RNLRHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAI 613

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           +L+  + + GI+PD VTFT++LSAC H+G +D+A  +F AM  ++G+ P +EHY  MV +
Sbjct: 614 ALYRSLEDMGIKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDL 673

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L+ A    +A   + +MP KP A++  +L+   +     EL +++  HL E EPEN+GNY
Sbjct: 674 LASAGETEKAIRLIEEMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPENSGNY 733

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG---GLQSFVAKDTSGDKSE 437
           + ++N Y+  G WDE  ++RE MK  GL K PG SWI+  G   G+  FVA D +  +++
Sbjct: 734 VTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQIKGEEEGVHVFVANDXTHIRND 793

Query: 438 QIYLILERLL 447
            I  IL  LL
Sbjct: 794 XIQRILALLL 803



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 203/404 (50%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   LF +M    V  P  VTV + L A      +  
Sbjct: 214 IPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGV-EPTRVTVSTCLSASANMVGVEE 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + +++D  +  +L+  Y K G ++YA  + D M DKD V+++ +ISGY+ 
Sbjct: 273 GKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQ 332

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A+ + Q+M+   L                               + + VT+S++
Sbjct: 333 QGLVEDAIYMSQLMRLEKL-------------------------------KYDCVTLSTL 361

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GKE+  Y +++  D +I +A+  +D YAK G +  A++VFD    + L
Sbjct: 362 MSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDL 421

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF EM    + P+ +T+  ++ +   +G V++A ++F  
Sbjct: 422 ILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQ 481

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  + +     EA  F+ KM    ++P+A      L  ++   
Sbjct: 482 MQSS-GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLA 540

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            +  G+ +  ++      ++   I   + ++Y++ G  ++A+RV
Sbjct: 541 SLHFGRSIHGYIIRNLRHSSSVSIETSLVDMYAKCGDINKAERV 584



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 196/414 (47%), Gaps = 49/414 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 116 RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIF-PDNFVVPNVCKACGALQWSRFGRG 174

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +VI++ ++  +++ ++L  MY KCG LD AR + DE+ +++ V+++A++ GY+ +G 
Sbjct: 175 VHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGM 234

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A+ LF                                +M+  GV P  VT+S+  S 
Sbjct: 235 NEEAIRLFS-------------------------------DMRKEGVEPTRVTVSTCLSA 263

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T++++ Y K G +  A+ VFDR   + ++ W
Sbjct: 264 SANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTW 323

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             +IS Y   G    A+ +   M    ++ D VT + ++SA A +     G   + + I 
Sbjct: 324 NLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIR 383

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           +++     +  +        G +  A+++ ++T       V+    +W  LL   + SG 
Sbjct: 384 HSLDTDIVLASTTMDMYAKCGSIVDAKKVFDST-------VEKDLILWNTLLAAYAQSGL 436

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
             E  +   +   E  P N  T N II++ L  + G  +EA  +  QM+ SG++
Sbjct: 437 SGEALRLFYEMQLESVPPNVITWNLIILSLL--RNGEVNEAKEMFLQMQSSGIS 488



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 45/319 (14%)

Query: 49  LQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           LQ C    D+  G ++H  ++++      + +I   L+  YAKC +L+ A  +  ++  +
Sbjct: 57  LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVR 116

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           +  S++AII      G  E A+                   G V             EM 
Sbjct: 117 NVFSWAAIIGVKCRIGLCEGAL------------------MGFV-------------EML 145

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            + + P+   + ++          + G+ +HGY +K   +  ++VA+++ D Y K G L 
Sbjct: 146 ENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLD 205

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A++VFD    R+++ W A++  Y  +G   +A+ LF++M   G++P  VT +  LSA A
Sbjct: 206 DARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASA 265

Query: 287 H-----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           +      G    A  I N +     +  S+ ++ C VG++       E  E V       
Sbjct: 266 NMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLI-------EYAEMVFDRMFDK 318

Query: 342 SAKVWGALLYGASISGDVE 360
               W  L+ G    G VE
Sbjct: 319 DVVTWNLLISGYVQQGLVE 337



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 12/222 (5%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N   +  L LV EM     R              +  +L  GK+I
Sbjct: 13  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGCVYERDLSTGKQI 72

Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y RN Y+ T ++  YAK   L  A+ +F + + R++  W AII      G
Sbjct: 73  HARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIG 132

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
               A+  F EML N I PD      V  AC         W  F      Y I+  +E  
Sbjct: 133 LCEGALMGFVEMLENEIFPDNFVVPNVCKACGA-----LQWSRFGRGVHGYVIKAGLEDC 187

Query: 315 ACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYG 352
             +   L+    +   + +A +   ++P + +   W AL+ G
Sbjct: 188 VFVASSLADMYGKCGVLDDARKVFDEIPER-NVVAWNALMVG 228


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 257/457 (56%), Gaps = 38/457 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M++GY+Q G  EE   LF EM+N+ +  PD  T V+V+ AC    D   
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGI-EPDETTWVTVISACSSRGDPCL 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +   + +  I+++ ++  AL+ MYAK G LD AR                       
Sbjct: 279 AASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSAR----------------------- 315

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
                    LF  M    + TWN++I+G  QN +    ++L +EM  A  + P+ VT+ S
Sbjct: 316 --------KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 367

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S   H   L+ G  +  +  +N+   +I    A+I  Y++ G +  A+RVF     R 
Sbjct: 368 VISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD 427

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ +  +IS +AAHG   +A++L + M   GI+PD VTF  VL+AC+H+GL+++   +F 
Sbjct: 428 VVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFE 487

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           ++       P+++HYACMV +L R   + +A   + +MP++P A V+G+LL  + I   V
Sbjct: 488 SIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQV 542

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+   + LFE+EP+N+GN+I+++N+Y+ AGRW + +R+RE MK+ G+ K  G SW+E 
Sbjct: 543 ELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEY 602

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G L  F+  D S ++S+ IY +L  L   MRE GY+
Sbjct: 603 GGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYI 639



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 202/441 (45%), Gaps = 47/441 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + SM+  YS    + +   ++ +M    V RPD      ++++ G       G+  
Sbjct: 64  NVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGV-RPDAFVYPILIKSAGTG-----GIGF 117

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAIISGY---- 118
           H  V++     D ++ NA+I MYA+ G + +AR + DE+ D +     ++A++SGY    
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 119 ----------------------MVHGF-----VEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
                                 MV G+     +E A   F  M    + +WNA++SG  Q
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQ 237

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
           N   E  L L  EM  +G+ P+  T  ++ S  S   +      +     + R   N +V
Sbjct: 238 NGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFV 297

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NG 270
            TA++D YAK G L  A+++F+   GR+++ W ++I+ YA +G ++ A+ LF EM+    
Sbjct: 298 RTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 357

Query: 271 IQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           + PD VT  +V+SAC H G ++   W +      Q  I+ S+  +  M+ + SR   + +
Sbjct: 358 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ--IKLSISGHNAMIFMYSRCGSMED 415

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMANLY 387
           A     +M  +     +  L+ G +  G       +   + E  IEP+    +I +    
Sbjct: 416 AKRVFQEMATRDVVS-YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV-TFIGVLTAC 473

Query: 388 SQAGRWDEADRVREQMKESGL 408
           S AG  +E  +V E +K+  +
Sbjct: 474 SHAGLLEEGRKVFESIKDPAI 494



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 141/378 (37%), Gaps = 114/378 (30%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF     P +  + +++        H  V+ +  +MQ  GVRP+A     +       S 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIK-----SA 110

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------------ 237
             GG   H + +K  +  + +V  A+ID YA+ G +  A++VFD                
Sbjct: 111 GTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 238 ---------------------RSLIIWTAII----------------------------- 247
                                R++I WTA++                             
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230

Query: 248 --SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-------------------- 285
             S YA +G A +A+ LF+EM+N GI+PD  T+  V+SAC                    
Sbjct: 231 MLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKR 290

Query: 286 ---------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
                          A  G +D A  +FN M G+     +V  +  M+   ++  + + A
Sbjct: 291 IQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR-----NVVTWNSMIAGYAQNGQSAMA 345

Query: 331 TEFVSKM----PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMAN 385
            E   +M     + P      +++      G +ELG +V   L E + + +   +  M  
Sbjct: 346 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 405

Query: 386 LYSQAGRWDEADRVREQM 403
           +YS+ G  ++A RV ++M
Sbjct: 406 MYSRCGSMEDAKRVFQEM 423


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 254/469 (54%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD  SWN++I+GY   G+Y E   LFR M  +     +  T+ S L A    S +  
Sbjct: 155 MPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRR 214

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H ++I S +++D  +  AL+ +Y KCGSL+ AR + D+M+DKD VS          
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVS---------- 264

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W  +I    ++ R +    L R++  SGVRPN  T + +
Sbjct: 265 ---------------------WTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGV 303

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  +  + GKE+HGY  +  YD   + A+A++  Y+K G    A+RVF++     L
Sbjct: 304 LNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDL 363

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I  YA +G    A+  F  +L +G +PD +TF  VLSAC H+GLVD   + F++
Sbjct: 364 VSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHS 423

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  ++G+  + +HYAC++ +L+R+ R  EA   +  MP+KP   +W +LL G  I G++E
Sbjct: 424 VKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIE 483

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     LFE+EPEN   YI ++N+Y+ AG W E  +VR  M   G+ K PG+SWIE  
Sbjct: 484 LAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIK 543

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  F+  DTS  K   I+  L  L   M+EEGYV     +L +VEEE
Sbjct: 544 RQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEE 592



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 168/326 (51%), Gaps = 3/326 (0%)

Query: 37  VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96
           + +P      +++ AC +   +  G  VH     S+    + I N LI MYAKCGSL  A
Sbjct: 58  IPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDA 117

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + L DE+  KD  S++ +ISGY   G +E+A  LF  M      +WNAVISG V    + 
Sbjct: 118 QMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYM 177

Query: 157 AVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
             LDL R MQ +     N  T+SS  +  +  S+L+ GKEIHGY +++  + +  V TA+
Sbjct: 178 EALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTAL 237

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           +D Y K G L+ A+ +FD+   + ++ WT +I      G   +  SLF +++ +G++P+ 
Sbjct: 238 LDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNE 297

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            TF  VL+ACA         ++   M+ + G  P     + +V V S+      A    +
Sbjct: 298 YTFAGVLNACADLAAEQMGKEVHGYMT-RVGYDPFSFAASALVHVYSKCGNTETARRVFN 356

Query: 336 KMPVKPSAKVWGALLYGASISGDVEL 361
           +MP +P    W +L+ G + +G  ++
Sbjct: 357 QMP-RPDLVSWTSLIVGYAQNGQPDM 381



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           +I    Q NR +  +D +  +     +P+    S++ +       L+ GK +H +   + 
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIP----QPSPRLYSTLIAACLRHRKLELGKRVHAHTKASN 93

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
           +   I ++  +I  YAK G L  AQ +FD    + L  W  +IS YA  G   +A  LF+
Sbjct: 94  FIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFD 153

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           EM +     D  ++ AV+S     G   +A D+F  M
Sbjct: 154 EMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMM 186


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 258/451 (57%), Gaps = 2/451 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +V++N+MI+GY   GFY+E   + R M++S +   D  T  SV++AC  +  +  G +VH
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGI-ELDEFTYPSVIRACATAGLLQLGKQVH 309

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            +V+           N+L+ +Y KCG  D ARA+ ++M  KD VS++A++SGY+  G + 
Sbjct: 310 AYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A  +F+ MK   + +W  +ISGL +N   E  L L   M+  G  P     S      +
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                  G++ H   +K  +D ++    A+I  YAK G +  A++VF        + W A
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I+A   HG  ++AV ++ EML  GI+PD +T   VL+AC+H+GLVD+    F++M   Y
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            I P  +HYA ++ +L R+ + S+A   +  +P KP+A++W ALL G  + G++ELG   
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
            D LF + PE+ G Y++++N+++  G+W+E  RVR+ M++ G+ K    SWIE    + +
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           F+  DTS  ++E +Y+ L+ L   MR  GYV
Sbjct: 669 FLVDDTSHPEAEAVYIYLQDLGKEMRRLGYV 699



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 159/312 (50%), Gaps = 13/312 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGM 62
           RD V +N+MI G+S          LF +M +    +PD  T  SVL      + D    +
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG-FKPDNFTFASVLAGLALVADDEKQCV 169

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGS----LDYARALLDEMSDKDEVSYSAIISGY 118
           + H   ++S       + NAL+ +Y+KC S    L  AR + DE+ +KDE S++ +++GY
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229

Query: 119 MVHGFVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           + +G+ +   +L + M     L  +NA+ISG V    ++  L++VR M +SG+  +  T 
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+    +    L+ GK++H Y ++ R D + +   +++  Y K G    A+ +F++   
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLR-REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPA 348

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + L+ W A++S Y + G   +A  +F EM    I    +++  ++S  A +G  ++   +
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKL 404

Query: 298 FNAMSGQYGIQP 309
           F+ M  + G +P
Sbjct: 405 FSCMKRE-GFEP 415



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 173/386 (44%), Gaps = 49/386 (12%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  +I    +    I N LI +Y K   L+YAR L DE+S+ D+++ + ++SGY   G 
Sbjct: 36  VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 124 VEKAMDLFQVMKRP----GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +  A  +F+  K P        +NA+I+G   NN   + ++L  +M+  G +P+  T +S
Sbjct: 96  ITLARGVFE--KAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFAS 153

Query: 180 IFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG----FLHGAQRVFDR 234
           + +  +  + + K   + H  A+K+       V+ A++  Y+K       LH A++VFD 
Sbjct: 154 VLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDE 213

Query: 235 FKGR--------------------------------SLIIWTAIISAYAAHGDASKAVSL 262
              +                                 L+ + A+IS Y   G   +A+ +
Sbjct: 214 ILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEM 273

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
              M+++GI+ D  T+ +V+ ACA +GL+     +   +  +       ++   +V +  
Sbjct: 274 VRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYY 331

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382
           +  +  EA     KMP K     W ALL G   SG +   K +     E++ +N  +++I
Sbjct: 332 KCGKFDEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLI---FKEMKEKNILSWMI 387

Query: 383 MANLYSQAGRWDEADRVREQMKESGL 408
           M +  ++ G  +E  ++   MK  G 
Sbjct: 388 MISGLAENGFGEEGLKLFSCMKREGF 413



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 63/287 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR--------------PDGVTVV 46
           M  +D+VSWN++++GY   G   E K +F+EM    +L                +G+ + 
Sbjct: 346 MPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLF 405

Query: 47  SVLQACG-QSSDIVF---------------GMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           S ++  G +  D  F               G + H  +++      L   NALI MYAKC
Sbjct: 406 SCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKC 465

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G ++ AR +   M   D VS++A+I+    HG   +A+D+++                  
Sbjct: 466 GVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYE------------------ 507

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL-KGGKEIHGYAVKNRYDRNI 209
                        EM   G+RP+ +T+ ++ +  SH   + +G K         R     
Sbjct: 508 -------------EMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA 554

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-IWTAIISAYAAHGD 255
                +ID   ++G    A+ V +    +    IW A++S    HG+
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGN 601



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 42/259 (16%)

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           ++L+  + +HG  +   +    ++   +ID Y K+  L+ A+++FD       I  T ++
Sbjct: 28  TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87

Query: 248 SAYAAHGDAS---------------------------------KAVSLFNEMLNNGIQPD 274
           S Y A GD +                                  A++LF +M + G +PD
Sbjct: 88  SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR---ARRISEAT 331
             TF +VL+  A     +K    F+A + + G          +V V S+   +  +  + 
Sbjct: 148 NFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSA 207

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQ 389
             V    ++   + W  ++ G   +G  +LG    + L E   +N     Y  M + Y  
Sbjct: 208 RKVFDEILEKDERSWTTMMTGYVKNGYFDLG----EELLEGMDDNMKLVAYNAMISGYVN 263

Query: 390 AGRWDEADRVREQMKESGL 408
            G + EA  +  +M  SG+
Sbjct: 264 RGFYQEALEMVRRMVSSGI 282


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 166/505 (32%), Positives = 265/505 (52%), Gaps = 44/505 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R  V +N ++ G +    + +   LF  M        PD  T    L++C  +  +V G 
Sbjct: 83  RTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGR 142

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H+      +  ++++ ++ I MYA+CG  D A  + +EM  +D VS++A+ISG+   G
Sbjct: 143 QIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAG 202

Query: 123 FVEKAMDLFQV--------------------------------------MKRPGLSTWNA 144
              +AMD+F+                                       M+  GL +WNA
Sbjct: 203 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNA 262

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           +++    N  H   ++L   MQ  G+ P+AVT++++       S L  GK IH    + R
Sbjct: 263 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 322

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
              ++ +  A++D YA  G L  A+ VFD    R ++ WT+IISAY  HG   +A+ LF 
Sbjct: 323 MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFE 382

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           +M   G++PD + F A+L+AC+H+GL+D     F +M+ ++ I P +EHYACMV +L RA
Sbjct: 383 KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRA 442

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384
             I EA +F+  MP+KP+ +VWGALL    I  ++++G    D L  + P+ TG Y++++
Sbjct: 443 GCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLS 502

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444
           N+Y++AGRW +   VR  M+  G+ K+PG S  E    + +F   DTS  +S+ IY  L 
Sbjct: 503 NIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLS 562

Query: 445 RLLGLMREEGY-----VLLDEVEEE 464
            LL  +RE GY       L +VEEE
Sbjct: 563 ELLRRIREMGYNPEVEATLHDVEEE 587



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 1/161 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + ++SWN+M+A Y+    + E   LF  M    +  PD VT+ +VL +CG+ S +  
Sbjct: 252 MRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGI-EPDAVTLATVLPSCGEVSALSL 310

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  +    +   + + NAL+ MYA CG L  AR + D M  +D VS+++IIS Y  
Sbjct: 311 GKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR 370

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           HG   +A+DLF+ M   GL   +     ++    H  +LD+
Sbjct: 371 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM 411



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW S+I+ Y + G   E   LF +M     L PD +  V++L AC  +  +  
Sbjct: 353 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQG-LEPDSIAFVAILAACSHAGLLDM 411

Query: 61  GME-VHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G    ++   E HI  K++ + C  ++ +  + G +  A   +  M  K +E  + A++ 
Sbjct: 412 GKHYFYSMTSEFHIAPKLEHYAC--MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLG 469

Query: 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
              +H  ++  +     + R  P  + +  ++S +       A + +VR  M++ G++
Sbjct: 470 ACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIK 527


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 256/462 (55%), Gaps = 14/462 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V WN+MI+GY   G   E   LFR M+   V   D  T  SVL AC        G 
Sbjct: 257 KFDVV-WNAMISGYVHSGMAVEAFELFRRMVLERVPL-DEFTFTSVLSACANVGLFAHGK 314

Query: 63  EVH--------NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
            VH        NFV E+ + ++    NAL+  Y+KCG++  AR + D M+ KD VS++ I
Sbjct: 315 SVHGQIIRLQPNFVPEAALPVN----NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTI 370

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           +SGY+    ++KA+++F+ M      +W  ++SG V     E  L L  +M++  V+P  
Sbjct: 371 LSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCD 430

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T +   +       LK GK++HG+ V+  ++ +     A+I  YA+ G +  A  +F  
Sbjct: 431 YTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLV 490

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
                 + W A+ISA   HG   +A+ LF+ M+  GI PD ++F  VL+AC HSGLVD+ 
Sbjct: 491 MPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEG 550

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           +  F +M   +GI P  +HY  ++ +L RA RI EA + +  MP +P+  +W A+L G  
Sbjct: 551 FRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCR 610

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
            SGD+ELG    D LF++ P++ G YI+++N YS AG W +A RVR+ M++ G+ K PG 
Sbjct: 611 TSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGC 670

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           SWIE    +  F+  DT   ++ ++Y  LE +   MR+ GYV
Sbjct: 671 SWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYV 712



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 162/323 (50%), Gaps = 14/323 (4%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF- 60
           ++RD V  N++I+ Y++        A+FR +L S  LRPD  +  ++L A G   +I   
Sbjct: 117 ARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVR 176

Query: 61  -GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY---ARALLDEMSDKDEVSYSAIIS 116
              ++H  V++S     L +CNAL+ +Y KC S +    AR +LDEM +KD+++++ ++ 
Sbjct: 177 HCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVV 236

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G V  A  +F+ +       WNA+ISG V +       +L R M    V  +  T
Sbjct: 237 GYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFT 296

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            +S+ S  ++      GK +HG  ++ +     +  + V  A++  Y+K G +  A+R+F
Sbjct: 297 FTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIF 356

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    + ++ W  I+S Y       KAV +F EM       + +++  ++S   H G  +
Sbjct: 357 DNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFAE 412

Query: 293 KAWDIFNAMSGQYGIQPSVEHYA 315
            A  +FN M  +  ++P    YA
Sbjct: 413 DALKLFNKMRSE-NVKPCDYTYA 434



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 32/170 (18%)

Query: 1   MSKRDIVSWNS-------------------------------MIAGYSQGGFYEECKALF 29
           M+ +D+VSWN+                               M++GY  GGF E+   LF
Sbjct: 359 MTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLF 418

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            +M  S  ++P   T    + ACG+   +  G ++H  +++   +      NALI MYA+
Sbjct: 419 NKM-RSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYAR 477

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           CG++  A  +   M + D VS++A+IS    HG   +A++LF  M   G+
Sbjct: 478 CGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGI 527


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 255/475 (53%), Gaps = 43/475 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +++RD+VSWN+MI GY + G YEE   LF+EM+ + V RPD  T+VSV+ AC QS  I  
Sbjct: 156 ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV-RPDEGTLVSVVSACAQSGSIEL 214

Query: 61  GMEVHNFVIESH----IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G +VH++V +          L I NALI +Y+KCG                         
Sbjct: 215 GRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD------------------------ 250

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                  VE A  LF+ +    + +WN +I G    N ++  L L +EM  SG  PN VT
Sbjct: 251 -------VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVT 303

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           + S+    +H   +  G+ IH Y  K          + T++ID YAK G +  A +VF+ 
Sbjct: 304 LLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNS 363

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              RSL  W A+I  +A HG A+ A  LF+ M  N ++PD +TF  +LSAC+HSGL+D  
Sbjct: 364 MLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLG 423

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             IF +M+  Y + P +EHY CM+ +L  +    EA E +  MP++P   +W +LL    
Sbjct: 424 RQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACK 483

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
             G++EL +     L +IEPEN+G+Y++++N+Y+ AGRW++  RVR  +   G+ K+PG 
Sbjct: 484 KHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGC 543

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           S IE    +  F+  D    +  +IY +LE +   + E G+      +L E+EEE
Sbjct: 544 SSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEE 598



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 183/358 (51%), Gaps = 7/358 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M+ G++          ++  M++   L P+  +   +L++C +S     G ++
Sbjct: 28  NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL-PNSYSFPFLLKSCAKSKAFEEGRQI 86

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +D ++  +LI MYA+ G L+ AR + D  S +D VS +A+I+GY   G  
Sbjct: 87  HAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDF 146

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F  +    + +WNA+I+G V+N R+E  L+L +EM  + VRP+  T+ S+ S  
Sbjct: 147 RSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSAC 206

Query: 185 SHFSNLKGGKEIHGYA----VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           +   +++ G+++H +       + +  ++ +  A+ID Y+K G +  A  +F+    + +
Sbjct: 207 AQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDV 266

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFN 299
           + W  +I  Y       +A+ LF EML +G  P+ VT  +VL ACAH G +D   W    
Sbjct: 267 VSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVY 326

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                 G+         ++ + ++   I  A +  + M  + S   W A+++G ++ G
Sbjct: 327 IDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR-SLSSWNAMIFGFAMHG 383



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN ++ G   ++   + L++   M + G  PN+ +   +    + 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               + G++IH   +K     + YV T++I  YA+ G L  A++VFD    R ++  TA+
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 247 ISAYAAHGD-------------------------------ASKAVSLFNEMLNNGIQPDP 275
           I+ YA+ GD                                 +A+ LF EM+   ++PD 
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 276 VTFTAVLSACAHSGLVD 292
            T  +V+SACA SG ++
Sbjct: 197 GTLVSVVSACAQSGSIE 213


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 163/495 (32%), Positives = 262/495 (52%), Gaps = 42/495 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K DI++WNS+++G+   G YE     FR  L S   +PD  ++ S LQA         G 
Sbjct: 330 KPDIITWNSLLSGHLLQGSYENVLTNFRS-LQSAGFKPDSCSITSALQAVIGLGCFNLGK 388

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H +++ S ++ D+++C +L+  Y K   LD A  +     +K+  +++++ISGY   G
Sbjct: 389 EIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKG 448

Query: 123 FVEKAMDLFQVMK----RPGLSTWN----------------------------------- 143
             + A  L   MK    +P L TWN                                   
Sbjct: 449 LFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWT 508

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A+ISG  QN  +   L    +MQ   V+PN+ TI ++    +  S LK G+EIH +++++
Sbjct: 509 AMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRH 568

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            +  +IY+ATA+ID Y K G L  A  VF   K ++L  W  ++  YA +G   +  +LF
Sbjct: 569 GFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLF 628

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           +EM   G++PD +TFTA+LS C +SGLV   W  F++M   Y I P++EHY+CMV +L +
Sbjct: 629 DEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGK 688

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A  + EA +F+  +P K  A +WGA+L    +  D+++ +    +L  +EP N+ NY +M
Sbjct: 689 AGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALM 748

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGR-SWIECSGGLQSFVAKDTSGDKSEQIYLI 442
            N+YS   RW + +R++E M   G+ KIP   SWI+    +  F  +  S  +  +IY  
Sbjct: 749 MNIYSTFDRWGDVERLKESMTALGV-KIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFE 807

Query: 443 LERLLGLMREEGYVL 457
           L +L+  +++ GYVL
Sbjct: 808 LYQLISEIKKLGYVL 822



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 214/410 (52%), Gaps = 14/410 (3%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+++    +   +E+   LFR M ++     DG T+V +LQACG+   +  G ++H +V
Sbjct: 200 WNTIVMANLRSEKWEDALELFRRMQSASAKATDG-TIVKLLQACGKLRALNEGKQIHGYV 258

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I      +  ICN+++ MY++   L+ AR   D   D +  S+++IIS Y V+  +  A 
Sbjct: 259 IRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAW 318

Query: 129 DLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           DL Q M+    +P + TWN+++SG +    +E VL   R +Q++G +P++ +I+S     
Sbjct: 319 DLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAV 378

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                   GKEIHGY ++++ + ++YV T+++D Y K   L  A+ VF   K +++  W 
Sbjct: 379 IGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWN 438

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++IS Y   G    A  L N+M   GI+PD VT+ +++S  + SG  ++A  + N +   
Sbjct: 439 SLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKS- 497

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVEL 361
            G+ P+V  +  M+    +     +A +F S+M    VKP++     LL   + S  +++
Sbjct: 498 LGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKI 557

Query: 362 GKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
           G+ +  H F +      +  I   + ++Y + G+   A  V   +KE  L
Sbjct: 558 GEEI--HCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTL 605



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 196/464 (42%), Gaps = 76/464 (16%)

Query: 4   RDIVSWNSMIAGY-SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R+ + WNS I  + S GG   E  A+F+E+ +  V + D   +  VL+ C    ++  GM
Sbjct: 93  RNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGV-KFDSKALTVVLKICLALMELWLGM 151

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           EVH  +++    +D+ +  ALI +Y K   +D A  + DE   +++  +           
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLW----------- 200

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                               N ++   +++ + E  L+L R MQ++  +    TI  +  
Sbjct: 201 --------------------NTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQ 240

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                  L  GK+IHGY ++     N  +  +I+  Y++   L  A+  FD  +  +   
Sbjct: 241 ACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSAS 300

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +IIS+YA +   + A  L  EM ++G++PD +T+ ++LS     G  +     F ++ 
Sbjct: 301 WNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQ 360

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
              G +P     +C          I+ A + V    +       G  ++G  +   +E  
Sbjct: 361 SA-GFKPD----SC---------SITSALQAV----IGLGCFNLGKEIHGYIMRSKLEYD 402

Query: 363 KFVCDHLF------------EIEPENTGNYIIMA-----NLYSQAGRWDEADRVREQMKE 405
            +VC  L             E+   +T N  I A     + Y+  G +D A+++  QMKE
Sbjct: 403 VYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKE 462

Query: 406 SGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGL 449
            G+ K    +W        S V+  +   +SE+   ++ R+  L
Sbjct: 463 EGI-KPDLVTW-------NSLVSGYSMSGRSEEALAVINRIKSL 498



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT-AIIDTYAKTGFLHGAQRVFDRF 235
            S  F  F     L   +E+H   +K    RN+     +++  Y + G    A +VF   
Sbjct: 31  FSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVG 90

Query: 236 KGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             R+ ++W + I  +A+  GD+ + +++F E+ + G++ D    T VL  C
Sbjct: 91  FARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKIC 141



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++ +  WN M+ GY+  G  EE   LF EM  + V RPD +T  ++L  C  S  ++ 
Sbjct: 600 IKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGV-RPDAITFTALLSGCKNSGLVMD 658

Query: 61  GMEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIISGY 118
           G +  + +  + +I   +   + ++ +  K G LD A   +  +  K + S + A+++  
Sbjct: 659 GWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAAC 718

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN-----NRHEAVLDLVREMQASGVR-P 172
            +H  ++ A    + + R  L  +N+    L+ N     +R   V  L   M A GV+ P
Sbjct: 719 RLHKDIKIAEIAARNLLR--LEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIP 776

Query: 173 N 173
           N
Sbjct: 777 N 777


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 268/472 (56%), Gaps = 6/472 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++ DI  +N++I   S      E   L+  +L S  LR D  ++  VL+A  +   I  G
Sbjct: 100 TRPDIYLYNTIIKALSNPELATEAILLYNRILASD-LRFDTYSLPFVLKAVVRLLAIHVG 158

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H   I + +  D+ +  ALI MY+ CG +  AR L D +  +D   ++A+++GY   
Sbjct: 159 RQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKV 218

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V+ A  LF+ M    + +W AVI+G  Q +R    + + R MQ   V P+ + + +  
Sbjct: 219 GDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAAL 278

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +H   L+ G+ IH Y  K+   + + +  A+ID YAK G +  A  VF   + +S+I
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVI 338

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT++I   A HG   +A+ +F+ M  N I+P+ +TF A+LSAC H GLV+     F  M
Sbjct: 339 TWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCM 398

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI+P ++HY CM+ +L RA  + EA E V  MP + +A +WG+LL  A I GD EL
Sbjct: 399 GTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAEL 458

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           GK    HL ++EP N+GNY +++N+Y+   +W+EA  VR+ M+++G+ K+PG S IE + 
Sbjct: 459 GKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNN 518

Query: 422 GLQSFVAKDTSGDKSEQIYLILERL-----LGLMREEGYVLLDEVEEESAYV 468
            +  FVA D    +SE+I+ +L +J     + +  ++ +V + E  +ES Y+
Sbjct: 519 RVHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYVQKEHVEMLESNKESGYI 570



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 128/278 (46%), Gaps = 40/278 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+++SW ++IAGY+Q     E   +FR M    V  PD + +++ L AC     +  
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEV-EPDEIAMLAALSACAHLGALEL 289

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +HN++ +  +   + + NALI MYAKCG ++ A  +   M  K  ++++++I G  +
Sbjct: 290 GEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLAL 349

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+++F  M+R                NR               ++PN +T  +I
Sbjct: 350 HGLGREALEMFSCMER----------------NR---------------IKPNEITFVAI 378

Query: 181 FSLFSHFSNLKGGK-EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKG 237
            S   H   ++ G+        K      I     +ID   + GFL  AQ +     F+ 
Sbjct: 379 LSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEA 438

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            +  IW ++++A   HGDA     L  + L + I+ +P
Sbjct: 439 NA-PIWGSLLAAARIHGDA----ELGKQALQHLIKVEP 471



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 144/352 (40%), Gaps = 43/352 (12%)

Query: 83  LIGMYAKCGSLDYARA----LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           L+ +  +C +L +       +L    D+D +  S  I      GF   +  +F    RP 
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           +  +N +I  L         + L   + AS +R +  ++  +         +  G++IH 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 199 YAVKNRYDRNIYVATAIIDT-------------------------------YAKTGFLHG 227
            A+      +I+V TA+I                                 YAK G +  
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+ +F+R   R++I WTA+I+ YA     ++A+++F  M    ++PD +   A LSACAH
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
            G ++    I N +  ++G+   V     ++ + ++  +I +A E    M  K S   W 
Sbjct: 284 LGALELGEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK-SVITWT 341

Query: 348 ALLYGASIS--GDVELGKFVCDHLFEIEPENTGNYIIMANLYS----QAGRW 393
           +++ G ++   G   L  F C     I+P       I++        + GRW
Sbjct: 342 SMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRW 393


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 260/456 (57%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS++++V+W ++I+G SQG FYEE   LF +M + PV  P+ +T +S L AC     I  
Sbjct: 103 MSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPV-DPNSLTYLSSLMACSGLQAIRE 161

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V +  +  DL I +AL+ MY+KCGSL+ A  + +   + DEVS + I+ G   
Sbjct: 162 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 221

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF E+++ +F  M +      N V+                       + PN   IS+I
Sbjct: 222 NGFEEESIQVFVKMVK------NGVV-----------------------IDPN--MISAI 250

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +F   ++L  GK+IH   +K  +  N +V   +I+ Y+K G L  + ++F     R+ 
Sbjct: 251 LGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNS 310

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+A+A HG+ S+A+ L+ EM   G+ P  VTF ++L ACAH GLV+K      +
Sbjct: 311 VSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 370

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI P +EHYAC+V ++ RA  ++EA +F+ ++P KP   VW ALL   SI G+ E
Sbjct: 371 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSE 430

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + LF   PE+   YI++AN+YS  G+W E  R  ++MK+ G+ K  G SWIE  
Sbjct: 431 MGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIE 490

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SFV +D     +E IY +L  L  LM +EGYV
Sbjct: 491 KQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYV 526



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 191/441 (43%), Gaps = 68/441 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D +SWNS I+G    G  E    +F+++  S + + D  T+ +VL AC +      
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H+ V     + ++ + NALI  Y +CG     R + DEMS+K+ V           
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVV----------- 109

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TW AVISGL Q   +E  L L  +M+   V PN++T  S 
Sbjct: 110 --------------------TWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSS 149

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    ++ G++IHG   K     ++ + +A++D Y+K G L  A ++F+  +    
Sbjct: 150 LMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDE 209

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           +  T I+   A +G   +++ +F +M+ NG+  DP   +A+L               HS 
Sbjct: 210 VSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSL 269

Query: 290 LVDKAW--------DIFNAMSGQYGIQPSVEHYA-----------CMVGVLSRARRISEA 330
           ++ K++         + N  S    +  S++ +             M+   +R    S A
Sbjct: 270 IIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRA 329

Query: 331 TEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMA 384
            +   +M ++   P+   + +LL+  +  G VE G    + +   + I P    +Y  + 
Sbjct: 330 LQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRME-HYACVV 388

Query: 385 NLYSQAGRWDEADRVREQMKE 405
           ++  +AG  +EA +  E++ E
Sbjct: 389 DMMGRAGLLNEAKKFIERLPE 409


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 257/468 (54%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y+E   LF EM+   V +PD  T+ +VL  C  S ++  G +
Sbjct: 173 KDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV-KPDESTMATVLSTCTHSGNVELGRQ 231

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+++       +L + NALI +Y+KCG +                              
Sbjct: 232 IHSWIDNHGFGSNLKLVNALIDLYSKCGEM------------------------------ 261

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A  LF+ ++   + +WN +I G    N H+  L + +EM   G  PN VT+ SI   
Sbjct: 262 -ERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPA 320

Query: 184 FSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K       N  + T++ID YAK G +  A +VFD    +SL 
Sbjct: 321 CAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLS 380

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
              A+I  +A HG A  A  L + M  +GI+PD +TF  +LSAC+H+GL D    IF +M
Sbjct: 381 SCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSM 440

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y I+P +EHY CM+ +L R+    EA E ++ M ++P   +WG+LL    I  ++EL
Sbjct: 441 TLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLEL 500

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ +   L +IEP+N G+Y++++N+Y+ + RWD+  RVR  + + GL K+PG S IE   
Sbjct: 501 GELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDS 560

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++++IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 561 MVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEE 608



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 211/435 (48%), Gaps = 40/435 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           +SWN+MI G++          L+  M+ S  L P+  T   + ++C +S     G ++H 
Sbjct: 44  LSWNTMIRGHALSSDPISALNLYVYMI-SLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHA 102

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +++  + +DL +  +LI MYA+ G ++ A  + D  S +D VSY+A+I+GY   G ++K
Sbjct: 103 QILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDK 162

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F  +    + +WNA+ISG  +  R++  L+L  EM    V+P+  T++++ S  +H
Sbjct: 163 AQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTH 222

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             N++ G++IH +   + +  N+ +  A+ID Y+K G +  A  +F+  + + +I W  +
Sbjct: 223 SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTL 282

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----------KAW 295
           I  YA      +A+ +F EML  G  P+ VT  ++L ACAH G +D           K  
Sbjct: 283 IGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK 342

Query: 296 DIFNAMSGQYG---------------------IQPSVEHYACMVGVLSRARRISEATEFV 334
            I    S Q                       +  S+     M+   +   R   A + +
Sbjct: 343 GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLL 402

Query: 335 SKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYS 388
           S+M    ++P    +  LL   S +G  +LG+ +   +   + IEP+   +Y  M +L  
Sbjct: 403 SRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPK-LEHYGCMIDLLG 461

Query: 389 QAGRWDEADRVREQM 403
           ++G + EA+ +   M
Sbjct: 462 RSGLFKEAEELINSM 476



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 46/296 (15%)

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            I++ Y  HG +  A+ +F+ ++ P   +WN +I G   ++   + L+L   M + G+ P
Sbjct: 19  CILTPYF-HG-LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSP 76

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N+ T   +F   +     + GK+IH   +K     +++V T++I  YA+ G +  A +VF
Sbjct: 77  NSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVF 136

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    R ++ +TA+I+ YA+ G+  KA  +F+E+       D V++ A++S  A  G   
Sbjct: 137 DTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEI----PIKDVVSWNAMISGYAEIGRYK 192

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +A ++FN M                                  KM VKP       +L  
Sbjct: 193 EALELFNEM---------------------------------MKMDVKPDESTMATVLST 219

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMAN----LYSQAGRWDEADRVREQMK 404
            + SG+VELG+ +  H + I+    G+ + + N    LYS+ G  + A  + E ++
Sbjct: 220 CTHSGNVELGRQI--HSW-IDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQ 272


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 251/457 (54%), Gaps = 36/457 (7%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKA--LFREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
            +  RD++SW +MI G +  G  E+ KA  LF +M N    RP   T  S+L+ C  S+ +
Sbjct: 593  LQHRDVMSWTAMIGGCADQG--EDMKAIELFWQMQNEG-FRPVKSTFSSILKVCTSSACL 649

Query: 59   VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
              G +V  +++ S  ++D  + NALI  Y+K GS+  AR                     
Sbjct: 650  DEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAR--------------------- 688

Query: 119  MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                      ++F  M    + +WN +I+G  QN   +  ++   +MQ   V PN  +  
Sbjct: 689  ----------EVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFV 738

Query: 179  SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S+ +  S FS L+ GK +H   VK +   ++ V  A+I  YAK G    AQ VFD    +
Sbjct: 739  SLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEK 798

Query: 239  SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +++ W A+I+AYA HG ASKA+  FN M   GI+PD  TFT++LSAC H+GLV + + IF
Sbjct: 799  NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIF 858

Query: 299  NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            ++M  +YG+ P++EHY C+VG+L RARR  EA   +++MP  P A VW  LL    I G+
Sbjct: 859  SSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 918

Query: 359  VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            + L +   ++  ++   N   YI+++N+Y+ AGRWD+  ++R  M+  G+ K PGRSWIE
Sbjct: 919  IALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 978

Query: 419  CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
                +  F+A D S  ++ +IY  L+RL   M E GY
Sbjct: 979  VDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 1015



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 219/468 (46%), Gaps = 50/468 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD++SWNSMIAG++Q G YE    LF+EM N   L PD +T  SVL  C     +  G +
Sbjct: 495 RDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE-LEPDNITFASVLSGCKNPEALELGKQ 553

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  + ES +++D+ + NALI MY +CGSL  AR +   +  +D +S++A+I G    G 
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             KA++LF          W                     +MQ  G RP   T SSI  +
Sbjct: 614 DMKAIELF----------W---------------------QMQNEGFRPVKSTFSSILKV 642

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  + L  GK++  Y + + Y+ +  V  A+I  Y+K+G +  A+ VFD+   R ++ W
Sbjct: 643 CTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSW 702

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             II+ YA +G    AV    +M    + P+  +F ++L+AC+    +++   + +A   
Sbjct: 703 NKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRV-HAEIV 761

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--DVEL 361
           +  +Q  V   A ++ + ++     EA E    + ++ +   W A++   +  G     L
Sbjct: 762 KRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHGLASKAL 820

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G F C     I+P+ +  +  + +  + AG   E  ++   M ES    +P    IE  G
Sbjct: 821 GFFNCMEKEGIKPDGS-TFTSILSACNHAGLVLEGYQIFSSM-ESEYGVLPT---IEHYG 875

Query: 422 GLQSFVAKDTSGDKSEQIY---------LILERLLGLMREEGYVLLDE 460
            L   + +     ++E +           + E LLG  R  G + L E
Sbjct: 876 CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAE 923



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 215/445 (48%), Gaps = 48/445 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD++SWN++IAGY++     E   L+++M  S  ++P  VT + +L AC  SS    
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  ++ S IK +  + NAL+ MY +CGSL  A+ + +    +D +S          
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS---------- 499

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G  Q+  +E    L +EMQ   + P+ +T +S+
Sbjct: 500 ---------------------WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S   +   L+ GK+IHG   ++    ++ +  A+I+ Y + G L  A+ VF   + R +
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV 598

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN- 299
           + WTA+I   A  G+  KA+ LF +M N G +P   TF+++L  C  S  +D+   +   
Sbjct: 599 MSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAY 658

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            ++  Y +   V +   ++   S++  +++A E   KMP +     W  ++ G + +G  
Sbjct: 659 ILNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKMPSRDIVS-WNKIIAGYAQNG-- 713

Query: 360 ELGKFVCDHLFEIEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            LG+   +  ++++ +    N  +++ + N  S     +E  RV  ++ +  L     + 
Sbjct: 714 -LGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKL-----QG 767

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIY 440
            +     L S  AK  S  ++++++
Sbjct: 768 DVRVGAALISMYAKCGSQGEAQEVF 792



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 178/352 (50%), Gaps = 34/352 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SWNS+I+ Y+Q GF ++   LF EM N+  + P+ +T +S+L AC   +++  
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPAELEN 146

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ +I++  + D  + N+L+ MY KCG L  AR +   +S +D VSY+ ++  Y  
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             +V++ + LF                                +M + G+ P+ VT  ++
Sbjct: 207 KAYVKECLGLFG-------------------------------QMSSEGISPDKVTYINL 235

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F+  S L  GK IH   V+   + +I V TA++    + G +  A++ F     R +
Sbjct: 236 LDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDV 295

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           +++ A+I+A A HG   +A   +  M ++G+  +  T+ ++L+AC+ S  ++ A  + ++
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE-AGKLIHS 354

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              + G    V+    ++ + +R   + +A E    MP K     W A++ G
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 168/362 (46%), Gaps = 44/362 (12%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQSS 56
           + RD+V +N++IA  +Q G   E    +  M      R DGV     T +S+L AC  S 
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRM------RSDGVALNRTTYLSILNACSTSK 344

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +  G  +H+ + E     D+ I NALI MYA+CG L  AR                   
Sbjct: 345 ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAR------------------- 385

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                       +LF  M +  L +WNA+I+G  +       + L ++MQ+ GV+P  VT
Sbjct: 386 ------------ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
              + S  ++ S    GK IH   +++    N ++A A+++ Y + G L  AQ VF+  +
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R +I W ++I+ +A HG    A  LF EM N  ++PD +TF +VLS C +   ++    
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           I   ++ + G+Q  V     ++ +  R   + +A      +  +     W A++ G +  
Sbjct: 554 IHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQ 611

Query: 357 GD 358
           G+
Sbjct: 612 GE 613



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 34/276 (12%)

Query: 25  CKALFREMLNSPVLRP---DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81
           C     ++ N+   RP   +  T V++LQ C +   +     +H  ++E+ +  D+++ N
Sbjct: 7   CGPDREDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSN 66

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
            LI MY KC S+  A  +  EM  +D +S++++IS Y   GF +KA  LF+         
Sbjct: 67  LLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFE--------- 117

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                                 EMQ +G  PN +T  SI +     + L+ GK+IH   +
Sbjct: 118 ----------------------EMQNAGFIPNKITYISILTACYSPAELENGKKIHSQII 155

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           K  Y R+  V  +++  Y K G L  A++VF     R ++ +  ++  YA      + + 
Sbjct: 156 KAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLG 215

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           LF +M + GI PD VT+  +L A     ++D+   I
Sbjct: 216 LFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 14/246 (5%)

Query: 171 RPNAVTISSIFSLFSHFSN---LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           RP     ++  +L  + +    L   K IH   V+     +I+++  +I+ Y K   +  
Sbjct: 21  RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD 80

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A +VF     R +I W ++IS YA  G   KA  LF EM N G  P+ +T+ ++L+AC  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 288 SGLVDKAWDIFNA-MSGQYGIQPSVEHYACMV----GVLSRARRISEATEFVSKMPVKPS 342
              ++    I +  +   Y   P V++    +    G L RAR++      +S   V   
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG---ISPRDVVSY 197

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402
             + G  LY         LG F       I P+    YI + + ++     DE  R+ + 
Sbjct: 198 NTMLG--LYAQKAYVKECLGLFGQMSSEGISPDKV-TYINLLDAFTTPSMLDEGKRIHKL 254

Query: 403 MKESGL 408
             E GL
Sbjct: 255 TVEEGL 260


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 263/459 (57%), Gaps = 39/459 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM---LNSPVLRPDGVTVVSVLQACGQSSD 57
           M+  D+VS+N+MI GYS+     E   LFREM   L+SP L    +  VS+L        
Sbjct: 404 MAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTL----LIFVSLLGVSASLYH 459

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +    ++H  +I+  + +D +  +ALI +Y+KC  +  AR + +E+ DKD V        
Sbjct: 460 LELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIV-------- 511

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                   W A+ SG  Q + +E  L L + +Q S ++PN  T 
Sbjct: 512 -----------------------VWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTF 548

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +++ +  S+ ++L+ G++ H   +K  +D + +VA  ++D YAK+G +  A + F     
Sbjct: 549 AAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNW 608

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +    W ++I+ YA HG+A KA+ +F +M+  G++P+ VTF  VLSAC+H+GL+D  +D 
Sbjct: 609 KDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDH 668

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F++MS Q+GI+P +EHY CMV +L RA ++ EA EF+ KMP+K +A VW +LL    +SG
Sbjct: 669 FDSMS-QFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSG 727

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +VELG +  +      P ++G+Y++++N+++  G W    R+RE+M  SG+ K PG SWI
Sbjct: 728 NVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWI 787

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E +  +  F+AKDT+   S  I L+L+ LL  ++  GY+
Sbjct: 788 EVNNEIHKFIAKDTAHRDSAPISLVLDNLLLQIKGFGYM 826



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 197/441 (44%), Gaps = 74/441 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSW ++IAG  Q  F+ +   LF EM       PD     SVL +CG    +  
Sbjct: 303 MVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMG-WNPDAFGCTSVLNSCGSLVALEK 361

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH + I+ +I  D ++ N LI MYAKC SL  AR + + M+  D VSY         
Sbjct: 362 GRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSY--------- 412

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 NA+I G  + ++    LDL REM+ S   P  +   S+
Sbjct: 413 ----------------------NAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSL 450

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +   +L+   +IHG  +K     + +  +A+ID Y+K   +  A+ VF+  + + +
Sbjct: 451 LGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDI 510

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           ++WTA+ S Y    +  +++ L+  +  + ++P+  TF AV++A +           H+ 
Sbjct: 511 VVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQ 570

Query: 290 LVDKAWD----IFNAMSGQYGIQPSVEH------------YAC---MVGVLSRARRISEA 330
           ++   +D    + N +   Y    S+E              AC   M+   ++     +A
Sbjct: 571 VIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKA 630

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL-----FEIEPENTGNYII 382
            +    M    +KP+   +  +L   S +G ++LG    DH      F IEP    +Y+ 
Sbjct: 631 LQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLG---FDHFDSMSQFGIEP-GIEHYVC 686

Query: 383 MANLYSQAGRWDEADRVREQM 403
           M +L  +AG+  EA    E+M
Sbjct: 687 MVSLLGRAGKLYEAKEFIEKM 707



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +W ++IAGYS+ G  +    LF +M    V  PD   + SVL AC     +  G ++H +
Sbjct: 209 TWTTIIAGYSKQGRSQVSLKLFDQMKEGHVC-PDKYVLSSVLSACLMLKFLEGGKQIHCY 267

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V+ S I MD+ + N  I  Y KC  +   R L D M DK+ VS                 
Sbjct: 268 VLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVS----------------- 310

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         W  VI+G +QN+ H   LDL  EM   G  P+A   +S+ +     
Sbjct: 311 --------------WTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSL 356

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L+ G+++H YA+K   D + +V   +ID YAK   L  A++VF+      L+ + A+I
Sbjct: 357 VALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMI 416

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
             Y+      +A+ LF EM  +   P  + F ++L   A    ++ +  I + +  +YG+
Sbjct: 417 EGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQI-HGLIIKYGV 475

Query: 308 QPSVEHYA--CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGK 363
             S++ +A   ++ V S+  R+ +A     ++  K    VW A+  G +   + E  L  
Sbjct: 476 --SLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIV-VWTAMFSGYTQQSENEESLKL 532

Query: 364 FVCDHLFEIEP 374
           + C  +  ++P
Sbjct: 533 YKCLQMSRLKP 543



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 31/285 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS +++V+W+SM++ Y+      E   LF + + S   +P+   + SV++AC Q   +  
Sbjct: 100 MSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNP 159

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++H  V++     D+++C +LI  Y K   +D AR L D +  K   +++ II+GY  
Sbjct: 160 ALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSK 219

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                               R +  L L  +M+   V P+   +SS+
Sbjct: 220 QG-------------------------------RSQVSLKLFDQMKEGHVCPDKYVLSSV 248

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S       L+GGK+IH Y +++    ++ +    ID Y K   +   +++FDR   +++
Sbjct: 249 LSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNV 308

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           + WT +I+    +     A+ LF EM   G  PD    T+VL++C
Sbjct: 309 VSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSC 353



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           + N L   +  C    +++ ++      D    + ++  Y     V  A  LF  M    
Sbjct: 45  LANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKN 104

Query: 139 LSTWNAVISGLVQNNRH--EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           L TW++++S +  ++ H  EA++  V+ M++   +PN   ++S+    + F  L    +I
Sbjct: 105 LVTWSSMVS-MYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQI 163

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           HG  VK  Y +++YV T++ID Y K   +  A+ +FD  + ++   WT II+ Y+  G +
Sbjct: 164 HGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRS 223

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             ++ LF++M    + PD    ++VLSAC
Sbjct: 224 QVSLKLFDQMKEGHVCPDKYVLSSVLSAC 252


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 264/455 (58%), Gaps = 9/455 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   DIVS+N MI GY++ GF  E   LF EM+    L PD  T++ +L +CGQ  ++ F
Sbjct: 124 MPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLG-LEPDEFTILGLLVSCGQLGNVKF 182

Query: 61  GMEVHNFV--IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G  VH ++   +  I  +L + NAL+ MY KC  ++ A      + +KD VS++ I++G 
Sbjct: 183 GKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGC 242

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G +E+A   F  M    + +WN++++G        +V +L+ +M    V P+ VT+ 
Sbjct: 243 AKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMI 302

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S  +    L  G+  HG+ ++ +   + ++ +A+ID Y K G +  A RVF     +
Sbjct: 303 SLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKK 362

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + +WT +I+  A HG  SKA+ LF+EM  + + PD VTF +VLSAC+HSGLVD+   +F
Sbjct: 363 DVTVWTTMITGLAFHGYGSKALELFSEMQED-VSPDDVTFVSVLSACSHSGLVDQGIKVF 421

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           ++M+  YGI+P VEHY C+V +L+R+ R+SEA + + +MP+KPS  +WGA+L      GD
Sbjct: 422 SSMT-DYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGD 480

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL +     L  ++PE  G Y +++N+Y+ +GRW  + ++RE M+  G+ K  G S + 
Sbjct: 481 VELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVV 540

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
             G + +F+    S DK    ++ +  +L  ++ E
Sbjct: 541 VDGVVHNFI----SADKCHPGWVDISSILNCLKNE 571



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/466 (22%), Positives = 186/466 (39%), Gaps = 112/466 (24%)

Query: 9   WNSMIAGYSQ----GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +N++I+ +S       FY     L+  +L+S    PD  T++ +LQA    S +    ++
Sbjct: 35  YNTLISAFSSLKKIESFY-----LYNVLLSSGEC-PDKQTLLYLLQAVNFISQV---KQI 85

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   I + +    ++ N LI +Y + G +  A  + ++M   D VS++ +I GY   GF 
Sbjct: 86  HCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFG 145

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +AM LF                                EM   G+ P+  TI  +    
Sbjct: 146 LEAMRLFH-------------------------------EMVGLGLEPDEFTILGLLVSC 174

Query: 185 SHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTY----------------------- 219
               N+K GK +HG+  + +     N+ +  A++D Y                       
Sbjct: 175 GQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVS 234

Query: 220 --------AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
                   AK G L  A+  F +   R ++ W ++++ YA  GD +    L  +M+   +
Sbjct: 235 WNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKV 294

Query: 272 QPDPVTFTAVLSACAHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
            PD VT  +++SA   SG +D+      W I   +     +  ++    C  G + RA R
Sbjct: 295 IPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASR 354

Query: 327 I-------------------------SEATEFVSKMP--VKPSAKVWGALLYGASISGDV 359
           +                         S+A E  S+M   V P    + ++L   S SG V
Sbjct: 355 VFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSVLSACSHSGLV 414

Query: 360 ELGKFVCDHL--FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           + G  V   +  + IEP    +Y  + +L +++GR  EA  + +QM
Sbjct: 415 DQGIKVFSSMTDYGIEP-GVEHYGCLVDLLARSGRLSEAKDIIDQM 459



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 44/320 (13%)

Query: 124 VEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           ++ A+ LF      P L  +N +IS      + E+   L   + +SG  P+  T+  +  
Sbjct: 16  LDLAITLFNHFTPNPNLFIYNTLISAFSSLKKIESFY-LYNVLLSSGECPDKQTLLYLLQ 74

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S +K   +IH  A+        Y+   +I  Y + G +  A +VF++     ++ 
Sbjct: 75  AVNFISQVK---QIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVS 131

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAW-- 295
           +  +I  YA  G   +A+ LF+EM+  G++PD  T   +L +C   G V        W  
Sbjct: 132 FNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWME 191

Query: 296 ----------DIFNAMSGQYGIQPSVEHYACMVGVL---------------SRARRISEA 330
                      + NA+   Y     VE      G L               ++   + +A
Sbjct: 192 RRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQA 251

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGD-VELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
             F  +MP +     W +L+ G +  GD   + + + D + E    +T   I + +  ++
Sbjct: 252 RLFFYQMPCRDIVS-WNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATE 310

Query: 390 A-----GRWDEADRVREQMK 404
           +     GRW     +R Q+K
Sbjct: 311 SGALDQGRWAHGWVIRMQIK 330


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 255/426 (59%), Gaps = 1/426 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++I GYSQ   Y+E   LF  M  + + + D VT+V ++ AC    D  F
Sbjct: 177 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANI-KADAVTMVKIILACSHLGDWEF 235

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +  ++ E+++++D+++ N LI MY +    + A+ + D M +++ VS++A++ G+  
Sbjct: 236 ADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAK 295

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A  LF  M +  + +W ++I+G  Q ++    + L +EM A+ V+P+ VT++S+
Sbjct: 296 VGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASV 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +H   L  G  +H Y  ++    +IYV  ++ID Y K G +  A  VF R K +  
Sbjct: 356 LSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDS 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++IS  A +G A+ A+ LF++ML  G+QP   TF  +L ACAH+GLV+K  + F +
Sbjct: 416 VSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFES 475

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +G+ P+++HY C+V +LSR+  I +A EF+ KMP+ P   VW  LL    + G+V 
Sbjct: 476 MESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVV 535

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L E++P ++GNY++++N Y+   RWD+A ++RE M++S + K  G S IE  
Sbjct: 536 LAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVD 595

Query: 421 GGLQSF 426
           G + ++
Sbjct: 596 GMVSNY 601



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 179/383 (46%), Gaps = 65/383 (16%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +V WN MI G SQ     E   ++  M +  +   + +T++ + +AC + SDIV G ++H
Sbjct: 81  LVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGI-TGNNLTLIFLFKACARVSDIVSGRKIH 139

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
              ++   +  L++ NALI MYA CG L +A+ + D M D+D VS++ +I GY       
Sbjct: 140 VHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGY------- 192

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                                    Q N+++ VL L   M A+ ++ +AVT+  I    S
Sbjct: 193 ------------------------SQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACS 228

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY-------------------------- 219
           H  + +    +  Y  +N  + ++Y+   +ID Y                          
Sbjct: 229 HLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNA 288

Query: 220 -----AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
                AK G L  A+++FD    R +I WT++I+ Y+     S AV LF EM+   ++PD
Sbjct: 289 LVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPD 348

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            VT  +VLSACAH G +D  W + + +  ++G+Q  +     ++ +  +   + +A E  
Sbjct: 349 KVTVASVLSACAHLGKLDVGWAVHHYIR-RHGVQADIYVGNSLIDMYCKCGMVEKALEVF 407

Query: 335 SKMPVKPSAKVWGALLYGASISG 357
            +M  K S   W +++ G +++G
Sbjct: 408 HRMKDKDSVS-WTSVISGLAVNG 429



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 141/284 (49%), Gaps = 13/284 (4%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + KA  +F  ++ P L  WN +I GL Q++     + +   M   G+  N +T+  +F  
Sbjct: 66  LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKA 125

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  S++  G++IH +A+K  ++  ++V+ A+I  YA  G L  AQ++FD    R L+ W
Sbjct: 126 CARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSW 185

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS- 302
             +I  Y+ +    + + LF+ M    I+ D VT   ++ AC+H G     W+  ++M  
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG----DWEFADSMVK 241

Query: 303 --GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
              +  ++  V     ++ +  R R ++E  + V     + +   W AL+ G +  G++ 
Sbjct: 242 YIKENNLEIDVYLGNTLIDMYGR-RSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLT 300

Query: 361 LGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQM 403
             +     LF+  P+ +  ++  M   YSQA ++ +A ++ ++M
Sbjct: 301 AAR----KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEM 340


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 266/475 (56%), Gaps = 45/475 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V+W+++IAGY+Q G   E   +FR+ML      P+ VT+VS+L  C  +  ++ G E 
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGS-EPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 65  HNFVIESHIKMD-------LWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAII 115
           H   I+  + +D       L + NALI MY+KC S   ARA+ D +  KD   V+++ +I
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            G   HG   +A++LF               S ++Q +                V PNA 
Sbjct: 469 GGNAQHGEANEALELF---------------SQMLQPDNF--------------VMPNAF 499

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFDR 234
           TIS      +    L+ G++IH Y ++NR++   ++VA  +ID Y+K+G +  A+ VFD 
Sbjct: 500 TISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDN 559

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R+ + WT++++ Y  HG   +A+ +F EM    + PD VTF  VL AC+HSG+VD+ 
Sbjct: 560 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQG 619

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            + FN M+  +G+ P  EHYACMV +LSRA R+ EA E +  MP+KP+  VW ALL    
Sbjct: 620 INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACR 679

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           +  +VELG++  + L E+E  N G+Y +++N+Y+ A  W +  R+R  MK +G+ K PG 
Sbjct: 680 VYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGC 739

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           SW++   G  +F A D S   S+QIY +L  L+  ++  GYV      L +V++E
Sbjct: 740 SWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDE 794



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 57/446 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSWNS++A Y QGG       +F  M     +RPD V++V+VL AC        G +V
Sbjct: 213 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 272

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + + S +  D+++ NA++ MYAKCG ++ A  + + M  KD VS++A+++GY   G  
Sbjct: 273 HGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 332

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + A+ LF+ ++   +     TW+AVI+G  Q       LD+ R+M   G  PN VT+ S+
Sbjct: 333 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSL 392

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-------NRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            S  +    L  GKE H +A+K       N    ++ V  A+ID Y+K      A+ +FD
Sbjct: 393 LSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFD 452

Query: 234 RF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAH-- 287
               K RS++ WT +I   A HG+A++A+ LF++ML  +N + P+  T +  L ACA   
Sbjct: 453 LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG 512

Query: 288 ----------------------------------SGLVDKAWDIFNAMSGQYGIQPSVEH 313
                                             SG VD A  +F+ M  + G+  S   
Sbjct: 513 ALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGV--SWTS 570

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---F 370
                G+  R     +    + K+ + P    +  +LY  S SG V+ G    + +   F
Sbjct: 571 LMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDF 630

Query: 371 EIEPENTGNYIIMANLYSQAGRWDEA 396
            + P    +Y  M +L S+AGR DEA
Sbjct: 631 GVVP-GAEHYACMVDLLSRAGRLDEA 655



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 34/303 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S   +  WN +I      GF E+   L+R M      RPD  T   VL+ACG+      G
Sbjct: 106 SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRM-QRLGWRPDHYTFPFVLKACGEIPSFRCG 164

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGY 118
             VH  V  S  + ++++ N L+ MY +CG+ + AR + DEM ++   D VS+++I++ Y
Sbjct: 165 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           M  G   +AM +F+ M                         DL       G+RP+AV++ 
Sbjct: 225 MQGGDSIRAMKMFERMTE-----------------------DL-------GIRPDAVSLV 254

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++    +       GK++HGYA+++    +++V  A++D YAK G +  A +VF+R K +
Sbjct: 255 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+++ Y+  G    A+ LF ++    I+ + VT++AV++  A  GL  +A D+F
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 299 NAM 301
             M
Sbjct: 375 RQM 377



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 19/306 (6%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGV 170
           IIS Y+      KA+ + + +  P   T   WN +I   V     E VL L R MQ  G 
Sbjct: 83  IISMYLTFNSPAKALSVLRRL-HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 141

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RP+  T   +        + + G  +H     + ++ N++V   ++  Y + G    A++
Sbjct: 142 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 201

Query: 231 VFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACA 286
           VFD  + R    L+ W +I++AY   GD+ +A+ +F  M  + GI+PD V+   VL ACA
Sbjct: 202 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 261

Query: 287 HSGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
             G    AW     + G   + G+   V     +V + ++   + EA +   +M VK   
Sbjct: 262 SVG----AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 317

Query: 344 KVWGALLYGASISG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
             W A++ G S  G  D  LG F      +IE        ++A  Y+Q G   EA  V  
Sbjct: 318 S-WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAG-YAQRGLGFEALDVFR 375

Query: 402 QMKESG 407
           QM   G
Sbjct: 376 QMLLCG 381


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 250/443 (56%), Gaps = 19/443 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWN +I GY + G  E+   +++ M  S  ++PD VT++ ++ +C    D+  G E
Sbjct: 145 RDLVSWNCLINGYKKIGEGEKAIEVYKVM-ESEGVKPDDVTMIGLVSSCAMLGDLNRGKE 203

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            + +V  + ++M + + NAL+ M++KCG +  AR + D +  +  VS             
Sbjct: 204 FYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVS------------- 250

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                 LF  M+   +  WNA+I G VQ  R +  L L +EMQ S   P+ +T+    S 
Sbjct: 251 -----KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSA 305

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G  IH Y  K+    N+ + T+++D YAK G +  A  VF   + R+ + +
Sbjct: 306 CSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTY 365

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TAII   A HGDAS A+S FNEM++ GI PD +TF  +LSAC H G++    D F+ M  
Sbjct: 366 TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS 425

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ + P ++HY+ MV +L RA  + EA + +  MP++  A VWGALL+G  + G+V+LG+
Sbjct: 426 RFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGE 485

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E++P ++G Y+++  +Y +A  W++A R R  M E G+ KIPG S IE +G +
Sbjct: 486 KAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 545

Query: 424 QSFVAKDTSGDKSEQIYLILERL 446
             F+ +D S  +SE+IY  L  L
Sbjct: 546 SEFIVRDKSRPESEKIYDCLHCL 568



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 195/463 (42%), Gaps = 83/463 (17%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLQACGQSSDIVFGMEVH 65
           SWN  I G+S+    ++    +++ML       RPD  T   + + C        G  + 
Sbjct: 45  SWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMIL 104

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V +  +++   + NA I M+A CG ++ AR + DE   +D VS++ +I+GY   G  E
Sbjct: 105 GHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGE 164

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           KA+++++V                               M++ GV+P+ VT+  + S  +
Sbjct: 165 KAIEVYKV-------------------------------MESEGVKPDDVTMIGLVSSCA 193

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----- 240
              +L  GKE + Y   N     I +A A++D ++K G +H A+R+FD  + R++     
Sbjct: 194 MLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLF 253

Query: 241 --------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
                   ++W A+I        +  A++LF EM  +   PD +T    LSAC+  G +D
Sbjct: 254 DDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALD 313

Query: 293 -----------------------------KAWDIFNAMSGQYGIQPSVE-HYACMVGVLS 322
                                        K  +I  A+   +GIQ      Y  ++G L+
Sbjct: 314 VGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLA 373

Query: 323 RARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPEN 376
                S A  + ++M    + P    +  LL      G ++ G+     +   F + P+ 
Sbjct: 374 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQ- 432

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
             +Y IM +L  +AG  +EAD++ E M     A + G     C
Sbjct: 433 LKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGC 475



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 120/258 (46%), Gaps = 36/258 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V WN+MI G  Q    ++  ALF+EM  S    PD +T++  L AC Q   +  
Sbjct: 256 MEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNT-DPDEITMIHCLSACSQLGALDV 314

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H ++ +  + +++ +  +L+ MYAKCG++  A  +   +  ++ ++Y+AII G  +
Sbjct: 315 GIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLAL 374

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A+  F                                EM  +G+ P+ +T   +
Sbjct: 375 HGDASTAISYFN-------------------------------EMIDAGIAPDEITFIGL 403

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S   H   ++ G++     +K+R++ N  +   + ++D   + G L  A ++ +     
Sbjct: 404 LSACCHGGMIQTGRDYFS-QMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPME 462

Query: 239 S-LIIWTAIISAYAAHGD 255
           +   +W A++     HG+
Sbjct: 463 ADAAVWGALLFGCRMHGN 480



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 103/212 (48%), Gaps = 6/212 (2%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGV---RPNAVTIS 178
           ++   + + + ++ P   +WN  I G  ++ N  +AVL   ++M   G    RP+  T  
Sbjct: 27  YLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVL-AYKQMLRRGCCESRPDHFTYP 85

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +F + +       G  I G+  K R +   +V  A I  +A  G +  A++VFD    R
Sbjct: 86  VLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVR 145

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            L+ W  +I+ Y   G+  KA+ ++  M + G++PD VT   ++S+CA  G +++  + +
Sbjct: 146 DLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFY 205

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
             +    G++ ++     ++ + S+   I EA
Sbjct: 206 EYVKAN-GLRMTIPLANALMDMFSKCGDIHEA 236


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 266/471 (56%), Gaps = 13/471 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + D   WN MI G+S     E    L++ ML S     +  T  S+L+AC   S      
Sbjct: 77  RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETT 135

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  + +   + D++  N+LI  YA  G+   A  L D + + D+VS++++I GY+  G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A+ LF+ M      +W  +ISG VQ + ++  L L  EMQ S V P+ V++++  S
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L+ GK IH Y  K R   +  +   +ID YAK G +  A  VF   K +S+  
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA 315

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+IS YA HG   +A+S F EM   GI+P+ +TFTAVL+AC+++GLV++   IF +M 
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y ++P++EHY C+V +L RA  + EA  F+ +MP+KP+A +WGALL    I  ++ELG
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + + + L  I+P + G Y+  AN+++   +WD+A   R  MKE G+AK+PG S I   G 
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495

Query: 423 LQSFVAKDTSGDKSEQI---YLILERLLGLMREEGYV------LLDEVEEE 464
              F+A D S  + E+I   + I+ R L    E GYV      LLD V+++
Sbjct: 496 THEFLAGDRSHPEIEKIQSKWRIMRRKL---EENGYVPELEEMLLDLVDDD 543



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 43/300 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++++ +SW +MI+GY Q    +E   LF EM NS V  PD V++ + L AC Q   +  
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV-EPDNVSLANALSACAQLGALEQ 265

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+++ ++ I+MD  +   LI MYAKCG ++ A  +   +  K   +++A+ISGY  
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+  F                                EMQ  G++PN +T +++
Sbjct: 326 HGHGREAISKFM-------------------------------EMQKMGIKPNVITFTAV 354

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT--AIIDTYAKTGFLHGAQRVFDRFKGR 238
            +  S+   ++ GK I  Y+++  Y+    +     I+D   + G L  A+R       +
Sbjct: 355 LTACSYTGLVEEGKLIF-YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK 413

Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT-FTAVLSACAHSGLVDKAWD 296
            + +IW A++ A   H    K + L  E+    I  DP      V  A  H+  +DK WD
Sbjct: 414 PNAVIWGALLKACRIH----KNIELGEEIGEILIAIDPYHGGRYVHKANIHA--MDKKWD 467



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 143/350 (40%), Gaps = 72/350 (20%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           F+  A  +F    RP    WN +I G   ++  E  L L + M  S    NA T  S+  
Sbjct: 64  FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLK 123

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR-------- 234
             S+ S  +   +IH    K  Y+ ++Y   ++I++YA TG    A  +FDR        
Sbjct: 124 ACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183

Query: 235 ----FKG-------------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
                KG                   ++ I WT +IS Y       +A+ LF+EM N+ +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-MVGVLSRARRISEA 330
           +PD V+    LSACA  G +++   I + ++       SV    C ++ + ++   + EA
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEA 301

Query: 331 TEF----------------------------------VSKMPVKPSAKVWGALLYGASIS 356
            E                                   + KM +KP+   + A+L   S +
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361

Query: 357 GDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           G VE GK +    +  + ++P    +Y  + +L  +AG  DEA R  ++M
Sbjct: 362 GLVEEGKLIFYSMERDYNLKP-TIEHYGCIVDLLGRAGLLDEAKRFIQEM 410


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 248/454 (54%), Gaps = 32/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D++SW +MI+G  Q    +    +FR ML S V+ P   T+ SVL AC +      
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVM-PSTATIASVLAACAELGSFPL 366

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +++   IK+D+   N+L+ MYAKCG L                           
Sbjct: 367 GTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHL--------------------------- 399

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E++  +F  M R  + +WNA++SG  QN      L L  EM+ +  RP+++T+ S+
Sbjct: 400 ----EQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSL 455

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L  GK IH +  K+     I + TA++D Y+K G L  AQ+ FDR   + L
Sbjct: 456 LQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDL 515

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W++II+ Y +HG    A+ ++++ L+ GIQP+ V + ++LSAC+H+GLVD+    F++
Sbjct: 516 VSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHS 575

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI+P +EH AC+V +LSRA R+ EA  F  +M  KPS  V G LL     +G+VE
Sbjct: 576 MTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVE 635

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG  V   +  ++P N GNY+ +A+ Y+   RWD    V  QMK   L K+PG S+IE  
Sbjct: 636 LGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELH 695

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           G + +F    +S  + E+I L+L+ L   MR+ G
Sbjct: 696 GTITTFFTDHSSHPQFEEIMLVLKILGSEMRKVG 729



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 42/391 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWNS+++GY+Q G   E   L   M  +  + PD  T  S++ A    S +  
Sbjct: 207 MDARDVISWNSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGV 265

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ + ++ D  I  +LIGMY KCG+                            
Sbjct: 266 GKMVHGHILRAGLEQDSHIETSLIGMYLKCGN---------------------------- 297

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V  A  +F+ M    + +W A+ISGLVQN+  +  + + R M  S V P+  TI+S+
Sbjct: 298 ---VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV 354

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +   G  +HGY ++ R   +I    +++  YAK G L  +  VFDR   R +
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W AI+S +A +G   KA+ LFNEM     +PD +T  ++L ACA  G + +   I N 
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNF 474

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGD 358
           ++ +  + P +     +V + S+   +  A +   +MP +     W +++  YG+   G+
Sbjct: 475 VT-KSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSIIAGYGSHGKGE 532

Query: 359 VELGKFVCDHLFE-IEPENTGNYIIMANLYS 388
             L +   D L   I+P    N++I  ++ S
Sbjct: 533 TAL-RMYSDFLHTGIQP----NHVIYLSILS 558



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 35/279 (12%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S+N++I   S  G + +    +  ML++    PD  T  S+++AC        G+  H  
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDT-PPDAHTFPSLVKACTSLDLFSHGLSFHQR 73

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI      D +I  +LI  Y+K G    AR + D M D++ V ++ +I  Y   G  + A
Sbjct: 74  VIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVA 133

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             ++ +M+R G+   +  + GL+       VL+LV                       H 
Sbjct: 134 FSMYNIMRRQGIQPSSVTMLGLL-----SGVLELV-----------------------HL 165

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L      H   ++  +  ++ +A ++++ Y K G +  AQ +F+    R +I W +++
Sbjct: 166 QCL------HACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLV 219

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           S YA  G+  + + L   M  +GI+PD  TF +++SA A
Sbjct: 220 SGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAA 258



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 41/303 (13%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   ++NA+I+ L        VL     M ++   P+A T  S+    +       G   
Sbjct: 11  PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H   + + Y  + Y+AT++I+ Y+K G    A++VFD    R+++ WT +I  Y   G+ 
Sbjct: 71  HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSA--------CAHS-------------------- 288
             A S++N M   GIQP  VT   +LS         C H+                    
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190

Query: 289 ----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKP 341
               G V+ A  +F  M  +      V  +  +V   ++   I E  + + +M    ++P
Sbjct: 191 YCKCGRVEDAQALFELMDAR-----DVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEP 245

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY-IIMANLYSQAGRWDEADRVR 400
             + +G+L+  A++   + +GK V  H+     E   +    +  +Y + G  + A R+ 
Sbjct: 246 DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIF 305

Query: 401 EQM 403
           E M
Sbjct: 306 EGM 308


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 1/443 (0%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++VSWN+MI G +Q G   E  ALFREM    VL  D  T VS+L  C +  ++  G  
Sbjct: 172 RNVVSWNTMIGGCAQAGETSEACALFREMRRQGVL-ADVFTFVSLLLVCSKEGNLEVGRL 230

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  ++ S  ++DL + NAL+ MY KCG L  A    D M  K+ VS+++++     HG 
Sbjct: 231 VHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGS 290

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+ A D F+ M    + +WNA+IS  VQ  R    L L   M++ G+ P+ VT++ + S+
Sbjct: 291 VDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSV 350

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +L  G+ IH Y   +  D  + V  ++ID YA+ G +  +  +F     ++ I W
Sbjct: 351 HGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISW 410

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             II A A HG A +AV  F  M+++   PD +TF  +LSAC+H GL++     F AM  
Sbjct: 411 NVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRH 470

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y ++P VEHYACMV +L R   +++A + +  MP+KP   VWGAL+    I G VE+GK
Sbjct: 471 IYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGK 530

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E+E  N G +++++NL  +  +W++  R+R+ M++ G  K  G S IE +  +
Sbjct: 531 LAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSI 590

Query: 424 QSFVAKDTSGDKSEQIYLILERL 446
             F  +D   + S QIY  +++L
Sbjct: 591 HEFGVEDIRHESSSQIYAAVDQL 613



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 188/442 (42%), Gaps = 65/442 (14%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D  ++NS+I  YS  G  +E   L R++L   +L P+  T+  VL+AC ++      +  
Sbjct: 71  DRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGIL-PNEFTLPFVLKACSRARAAEHALAT 129

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVHGF 123
           H   I+      +++ NAL+   A  GSL  +R L  EM+  ++ VS++ +I G    G 
Sbjct: 130 HGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGE 189

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISS 179
             +A  LF+ M+R G+         L+     E  L++ R     M ASG R + +  ++
Sbjct: 190 TSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNA 249

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           +  ++    +L        +     +D    +N+   T+++   AK G +  A+  F++ 
Sbjct: 250 LVDMYGKCGDL--------WMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQM 301

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA----------- 284
             R++I W A+IS Y   G   + + L+N M + G+ PD VT   VLS            
Sbjct: 302 PERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGR 361

Query: 285 ---C---------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
              C                     A  G VD +  +F  M  +  I  +V     ++G 
Sbjct: 362 MIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNV-----IIGA 416

Query: 321 LSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEP 374
           L+   R  EA  F   M      P    +  LL   S  G +E G++      H++ ++P
Sbjct: 417 LAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKP 476

Query: 375 ENTGNYIIMANLYSQAGRWDEA 396
           E   +Y  M +L  + G   +A
Sbjct: 477 E-VEHYACMVDLLGRHGHLAKA 497



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 65/292 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+I+SWN+MI+ Y QGG + E   L+  M  S  L PD VT+  VL   GQ+ D+  
Sbjct: 301 MPERNIISWNAMISCYVQGGRFPETLGLYNRM-KSLGLTPDEVTLAGVLSVHGQNGDLAS 359

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++ +S     + + N+LI MYA+CG +D + +L  EM +K+ +S++ II    +
Sbjct: 360 GRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAM 419

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  ++A+  F                               R M +    P+ +T   +
Sbjct: 420 HGRAQEAVMFF-------------------------------RAMVSDAFSPDEITFVGL 448

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  SH   L+ G+    Y  K    R+IY     ++ YA                    
Sbjct: 449 LSACSHGGLLEDGQ----YYFKAM--RHIYNVKPEVEHYA-------------------- 482

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
                ++     HG  +KAV L  +M    ++PD V + A++ AC   G V+
Sbjct: 483 ----CMVDLLGRHGHLAKAVDLIKDM---PMKPDVVVWGALIGACRIHGHVE 527



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 39/319 (12%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           +L +AR + D + D D  +Y+++I  Y   G  ++A+ L +                   
Sbjct: 56  ALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHR------------------- 96

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
                   D++R     G+ PN  T+  +    S     +     HG A+K  Y R ++V
Sbjct: 97  --------DVLRR----GILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFV 144

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRF-KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
             A++ + A  G L  ++R+F      R+++ W  +I   A  G+ S+A +LF EM   G
Sbjct: 145 GNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQG 204

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
           +  D  TF ++L  C+  G ++    +   M    G +  +     +V +  +   +  A
Sbjct: 205 VLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLAS-GSRVDLILGNALVDMYGKCGDLWMA 263

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQ 389
                 MP+K +   W ++L   +  G V+  +      FE  PE N  ++  M + Y Q
Sbjct: 264 HRCFDVMPIK-NVVSWTSMLCALAKHGSVDAAR----DWFEQMPERNIISWNAMISCYVQ 318

Query: 390 AGRWDEADRVREQMKESGL 408
            GR+ E   +  +MK  GL
Sbjct: 319 GGRFPETLGLYNRMKSLGL 337


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 268/472 (56%), Gaps = 6/472 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++ DI  +N++I   S      E   L+  +L S  LR D  ++  VL+A  +   I  G
Sbjct: 100 TRPDIYLYNTIIKALSNPELATEAILLYNRILASD-LRFDTYSLPFVLKAVVRLLAIHVG 158

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H   I + +  D+ +  ALI MY+ CG +  AR L D +  +D   ++A+++GY   
Sbjct: 159 RQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKV 218

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V+ A  LF+ M    + +W AVI+G  Q +R    + + R MQ   V P+ + + +  
Sbjct: 219 GDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAAL 278

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +H   L+ G+ IH Y  K+   + + +  A+ID YAK G +  A  VF   + +S+I
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVI 338

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT++I   A HG   +A+ +F+ M  N I+P+ +TF A+LSAC H GLV+     F  M
Sbjct: 339 TWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCM 398

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI+P ++HY CM+ +L RA  + EA E V  MP + +A +WG+LL  A I GD EL
Sbjct: 399 GTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAEL 458

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           GK    HL ++EP N+GNY +++N+Y+   +W+EA  VR+ M+++G+ K+PG S IE + 
Sbjct: 459 GKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNN 518

Query: 422 GLQSFVAKDTSGDKSEQIYLILERL-----LGLMREEGYVLLDEVEEESAYV 468
            +  FVA D    +SE+I+ +L ++     + +  ++ +V + E  +ES Y+
Sbjct: 519 RVHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYVQKEHVEMLESNKESGYI 570



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 128/278 (46%), Gaps = 40/278 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+++SW ++IAGY+Q     E   +FR M    V  PD + +++ L AC     +  
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEV-EPDEIAMLAALSACAHLGALEL 289

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +HN++ +  +   + + NALI MYAKCG ++ A  +   M  K  ++++++I G  +
Sbjct: 290 GEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLAL 349

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+++F  M+R                NR               ++PN +T  +I
Sbjct: 350 HGLGREALEMFSCMER----------------NR---------------IKPNEITFVAI 378

Query: 181 FSLFSHFSNLKGGK-EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKG 237
            S   H   ++ G+        K      I     +ID   + GFL  AQ +     F+ 
Sbjct: 379 LSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEA 438

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            +  IW ++++A   HGDA     L  + L + I+ +P
Sbjct: 439 NA-PIWGSLLAAARIHGDA----ELGKQALQHLIKVEP 471



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 144/352 (40%), Gaps = 43/352 (12%)

Query: 83  LIGMYAKCGSLDYARA----LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           L+ +  +C +L +       +L    D+D +  S  I      GF   +  +F    RP 
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           +  +N +I  L         + L   + AS +R +  ++  +         +  G++IH 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 199 YAVKNRYDRNIYVATAIIDT-------------------------------YAKTGFLHG 227
            A+      +I+V TA+I                                 YAK G +  
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+ +F+R   R++I WTA+I+ YA     ++A+++F  M    ++PD +   A LSACAH
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
            G ++    I N +  ++G+   V     ++ + ++  +I +A E    M  K S   W 
Sbjct: 284 LGALELGEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK-SVITWT 341

Query: 348 ALLYGASIS--GDVELGKFVCDHLFEIEPENTGNYIIMANLYS----QAGRW 393
           +++ G ++   G   L  F C     I+P       I++        + GRW
Sbjct: 342 SMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRW 393


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 251/469 (53%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + KRD+VSW SMIAGY Q  F EE  A F+EM +  V  PD + + S   AC     +  
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVW-PDNIGLASAASACAGIKAMRQ 465

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  V  S    D+ I N L+ +YA+CG  + A +L  E+  KDE+           
Sbjct: 466 GLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI----------- 514

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG  Q+  +E  L +  +M  +G + N  T  S 
Sbjct: 515 --------------------TWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISA 554

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ +++K GK++HG AVK  +     VA A+I  Y K G +  A+ +F     R+ 
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE 614

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II++ + HG   +A+ LF++M   G++P+ VTF  VL+AC+H GLV++    F +
Sbjct: 615 VSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKS 674

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG+ P  +HYAC+V +L RA ++  A  FV +MP+  +A +W  LL    +  ++E
Sbjct: 675 MSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIE 734

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+    HL E+EP ++ +Y++++N Y+  G+W   D+VR+ MK+ G+ K PGRSWIE  
Sbjct: 735 IGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVK 794

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F   D     S+QIY  L  L   + + GY      L  E E+E
Sbjct: 795 NAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQE 843



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 34/348 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D V++N++I+G++Q G  E    +F EM  S  LRPD VTV S+L AC    D+  G ++
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSG-LRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H++++++ +  D     +L+ +Y KCG                                +
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGD-------------------------------I 296

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A D+F +  R  +  WN ++    Q +      ++  +MQA+G+ PN  T   I    
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    ++ G++IH  ++KN ++ ++YV+  +ID Y+K   L  A+++ +  + R ++ WT
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWT 416

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I+ Y  H    +A++ F EM + G+ PD +   +  SACA    + +   I +A    
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI-HARVYV 475

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            G    +  +  +V + +R  R  EA     ++  K     W  L+ G
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI-TWNGLISG 522



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 168/352 (47%), Gaps = 34/352 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD VSW +M++GY+Q G  +E   L+ +M  + V+ P    + SVL AC +      
Sbjct: 104 LSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACTKGKLFAQ 162

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +     + ++ NALI +Y   GS   A  +  +M   D V+++ +ISG+  
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E A+ +F                                EMQ SG+RP+ VT++S+
Sbjct: 223 CGHGECALQIFD-------------------------------EMQLSGLRPDCVTVASL 251

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L+ GK++H Y +K     +     +++D Y K G +  A  +F+     ++
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ AY    D +K+  +F +M   GI P+  T+  +L  C  +G ++    I ++
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQI-HS 370

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +S + G +  +     ++ + S+ R + +A + + +M  K     W +++ G
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL-EMLEKRDVVSWTSMIAG 421



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/444 (21%), Positives = 184/444 (41%), Gaps = 67/444 (15%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + ++V WN M+  Y Q     +   +F +M  +  + P+  T   +L+ C  +  I  G 
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQM-QATGIHPNKFTYPCILRTCTCTGQIELGE 366

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H+  I++  + D+++   LI MY+K   LD AR +L+ +  +D VS            
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS------------ 414

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W ++I+G VQ++  E  L   +EMQ  GV P+ + ++S  S
Sbjct: 415 -------------------WTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    ++ G +IH     + Y  +I +   +++ YA+ G    A  +F     +  I 
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT 515

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-------- 294
           W  +IS +       +A+ +F +M   G + +  TF + +SA A+   + +         
Sbjct: 516 WNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 295 -------WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------EATE 332
                   ++ NA+   YG   S+E    +   +S    +S               EA +
Sbjct: 576 KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALD 635

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLY 387
              +M    +KP+   +  +L   S  G VE G      +  +   N    +Y  + ++ 
Sbjct: 636 LFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDIL 695

Query: 388 SQAGRWDEADRVREQMKESGLAKI 411
            +AG+ D A R  ++M  +  A I
Sbjct: 696 GRAGQLDRARRFVDEMPITANAMI 719



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 170/403 (42%), Gaps = 80/403 (19%)

Query: 45  VVSVLQAC-GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           +   LQAC G+ +     +E+H   +   +  D  I N LI +YAK G +  AR +  E+
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           S +D VS+ A++SGY   G  ++A  L+  M       W AVI                 
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMH------WTAVI----------------- 141

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
                   P    +SS+ S  +       G+ IH    K  +    +V  A+I  Y   G
Sbjct: 142 --------PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG 193

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               A+RVF        + +  +IS +A  G    A+ +F+EM  +G++PD VT  ++L+
Sbjct: 194 SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLA 253

Query: 284 ACA-----------HS------------------------GLVDKAWDIFNAMSGQYGIQ 308
           ACA           HS                        G ++ A DIFN      G +
Sbjct: 254 ACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN-----LGDR 308

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFV 365
            +V  +  M+    +   ++++ E   +M    + P+   +  +L   + +G +ELG+ +
Sbjct: 309 TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQI 368

Query: 366 CDHLFEIEPE-NTGNYI--IMANLYSQAGRWDEADRVREQMKE 405
             H   I+    +  Y+  ++ ++YS+    D+A ++ E +++
Sbjct: 369 --HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEK 409


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 260/456 (57%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS++++V+W ++I+G SQG FYEE   LF +M + PV  P+ +T +S L AC     I  
Sbjct: 217 MSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPV-DPNSLTYLSSLMACSGLQAIRE 275

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V +  +  DL I +AL+ MY+KCGSL+ A  + +   + DEVS + I+ G   
Sbjct: 276 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 335

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF E+++ +F  M +      N V+                       + PN   IS+I
Sbjct: 336 NGFEEESIQVFVKMVK------NGVV-----------------------IDPN--MISAI 364

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +F   ++L  GK+IH   +K  +  N +V   +I+ Y+K G L  + ++F     R+ 
Sbjct: 365 LGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNS 424

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+A+A HG+ S+A+ L+ EM   G+ P  VTF ++L ACAH GLV+K      +
Sbjct: 425 VSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 484

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI P +EHYAC+V ++ RA  ++EA +F+ ++P KP   VW ALL   SI G+ E
Sbjct: 485 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSE 544

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + LF   PE+   YI++AN+YS  G+W E  R  ++MK+ G+ K  G SWIE  
Sbjct: 545 MGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIE 604

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SFV +D     +E IY +L  L  LM +EGYV
Sbjct: 605 KQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYV 640



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 191/441 (43%), Gaps = 68/441 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D +SWNS I+G    G  E    +F+++  S + + D  T+ +VL AC +      
Sbjct: 115 MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 174

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H+ V     + ++ + NALI  Y +CG     R + DEMS+K+ V           
Sbjct: 175 SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVV----------- 223

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TW AVISGL Q   +E  L L  +M+   V PN++T  S 
Sbjct: 224 --------------------TWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSS 263

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    ++ G++IHG   K     ++ + +A++D Y+K G L  A ++F+  +    
Sbjct: 264 LMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDE 323

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           +  T I+   A +G   +++ +F +M+ NG+  DP   +A+L               HS 
Sbjct: 324 VSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSL 383

Query: 290 LVDKAW--------DIFNAMSGQYGIQPSVEHYA-----------CMVGVLSRARRISEA 330
           ++ K++         + N  S    +  S++ +             M+   +R    S A
Sbjct: 384 IIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRA 443

Query: 331 TEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMA 384
            +   +M ++   P+   + +LL+  +  G VE G    + +   + I P    +Y  + 
Sbjct: 444 LQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPR-MEHYACVV 502

Query: 385 NLYSQAGRWDEADRVREQMKE 405
           ++  +AG  +EA +  E++ E
Sbjct: 503 DMMGRAGLLNEAKKFIERLPE 523


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 255/456 (55%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSW S+IAGY+Q    EE   L   ML     +P+G T  S+L+A G  +D   
Sbjct: 112 MRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGR-FKPNGFTFASLLKAAGAHADSGI 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 171 GRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVS---------- 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  +    E  L    EM  +G      T SS+
Sbjct: 221 ---------------------WNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSV 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+R     +    ++D YAK+G +  A++VFDR   + L
Sbjct: 260 FSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDL 319

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++A+A +G   +AVS F EM  +GI  + VTF  +L+AC+H GLV +    F  
Sbjct: 320 VTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEM 379

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P ++H+  +V +L RA  ++ A  F+ KMP++P+A VWGALL    +  + +
Sbjct: 380 MK-EYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAK 438

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+FE++P+++G  +++ N+Y+  G+WD A RVR  MK +G+ K P  SW+E  
Sbjct: 439 VGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEME 498

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  ++E+IY +  ++   +R+EGYV
Sbjct: 499 NSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYV 534



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 173/383 (45%), Gaps = 42/383 (10%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           ++L++  L P      + + AC QS ++    +VH  +  S    D ++ N+LI +Y KC
Sbjct: 40  DLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKC 99

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+  AR + DEM  KD VS++++I+GY                                
Sbjct: 100 GSVLEARKVFDEMRRKDMVSWTSLIAGY-------------------------------A 128

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
           QN+  E  + L+  M     +PN  T +S+       ++   G++IH  AVK  +  ++Y
Sbjct: 129 QNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVY 188

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V +A++D YA+ G +  A  VFD+   ++ + W A+IS +A  GD   A+  F EML NG
Sbjct: 189 VGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNG 248

Query: 271 IQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            +    T+++V S+ A  G +++  W   + +  +  +     +   ++ + +++  + +
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGN--TLLDMYAKSGSMID 306

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE----NTGNYIIMAN 385
           A +   ++  K     W  +L   +  G   LGK    H  E+       N   ++ +  
Sbjct: 307 ARKVFDRVDDK-DLVTWNTMLTAFAQYG---LGKEAVSHFEEMRKSGIYLNQVTFLCILT 362

Query: 386 LYSQAGRWDEADRVREQMKESGL 408
             S  G   E  R  E MKE  L
Sbjct: 363 ACSHGGLVKEGKRYFEMMKEYDL 385



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 118/264 (44%), Gaps = 18/264 (6%)

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
           AVL  +  + A  + P      +  +  +   NL+  +++H +   +R+  + ++  ++I
Sbjct: 34  AVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLI 93

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             Y K G +  A++VFD  + + ++ WT++I+ YA +    +A+ L   ML    +P+  
Sbjct: 94  HLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGF 153

Query: 277 TFTAVLSAC---AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           TF ++L A    A SG+  +     +A++ +      V   + ++ + +R   +  AT  
Sbjct: 154 TFASLLKAAGAHADSGIGRQ----IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAV 209

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS----- 388
             K+  K     W AL+ G +  GD E        +     E T  +   ++++S     
Sbjct: 210 FDKLDSKNGVS-WNALISGFARKGDGETALMTFAEMLRNGFEAT--HFTYSSVFSSIARL 266

Query: 389 ---QAGRWDEADRVREQMKESGLA 409
              + G+W  A  ++ + K +  A
Sbjct: 267 GALEQGKWVHAHMIKSRQKMTAFA 290


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/473 (36%), Positives = 260/473 (54%), Gaps = 10/473 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+    V+WN+MI+GY   GFYEE   L R M +S  ++ D  T  SV+ A   +     
Sbjct: 234 MTDHIAVAWNAMISGYVHRGFYEEAFDLLRRM-HSLGIQLDEYTYTSVISAASNAGLFNI 292

Query: 61  GMEVHNFVIESHIKMD----LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G +VH +V+ + ++      L + NALI +Y +CG L  AR + D+M  KD VS++AI+S
Sbjct: 293 GRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILS 352

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           G +    +E+A  +F+ M    L TW  +ISGL QN   E  L L  +M+  G+ P    
Sbjct: 353 GCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYA 412

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +   +  S   +L  G+++H   ++  +D ++ V  A+I  Y++ G +  A  VF    
Sbjct: 413 YAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMP 472

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
               + W A+I+A A HG   +A+ L+ +ML   I PD +TF  +LSAC+H+GLV +   
Sbjct: 473 YVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRH 532

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F+ M   YGI P  +HY+ ++ +L RA   SEA      MP +P A +W ALL G  I 
Sbjct: 533 YFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIH 592

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G++ELG    D L E+ P+  G YI ++N+Y+  G+WDE  RVR+ M+E G+ K PG SW
Sbjct: 593 GNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSW 652

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           IE    +  F+  D    +   +Y  LE+L+  MR+ GYV     +L ++E E
Sbjct: 653 IEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESE 705



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 158/337 (46%), Gaps = 34/337 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD VS+N+MI  +S          LF +M     + PD  T  SVL A    +D   
Sbjct: 90  MSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFV-PDPFTFSSVLGALSLIAD--- 145

Query: 61  GMEVHNFVIESHIKMDLW-------ICNALIGMYAKCGS---------LDYARALLDEMS 104
             E H    + H ++  W       + NAL+  Y  C S         +  AR L DE  
Sbjct: 146 -EETH--CQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAP 202

Query: 105 D--KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
              +DE +++ II+GY+ +  +  A +L + M       WNA+ISG V    +E   DL+
Sbjct: 203 PGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLL 262

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN----IYVATAIIDT 218
           R M + G++ +  T +S+ S  S+      G+++H Y ++     +    + V  A+I  
Sbjct: 263 RRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITL 322

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y + G L  A+RVFD+   + L+ W AI+S         +A S+F EM    +    +T+
Sbjct: 323 YTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSL----LTW 378

Query: 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
           T ++S  A +G  ++   +FN M  + G++P    YA
Sbjct: 379 TVMISGLAQNGFGEEGLKLFNQMKLE-GLEPCDYAYA 414



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 165/408 (40%), Gaps = 60/408 (14%)

Query: 53  GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
            Q S   F   VH  ++ S  K    I N LI  Y K  ++ YAR L D++   D V+ +
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 113 AIISGYMVHGFVEKAMDLFQV--MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
            ++S Y   G ++ A  LF    M      ++NA+I+    ++   A L L  +M+  G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 171 RPNAVTISSIFSLFSHFSN----------------------------------------- 189
            P+  T SS+    S  ++                                         
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186

Query: 190 ----LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               +   +++   A   R D   +  T II  Y +   L  A+ + +       + W A
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAW--TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNA 244

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +IS Y   G   +A  L   M + GIQ D  T+T+V+SA +++GL +    + +A   + 
Sbjct: 245 MISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQV-HAYVLRT 303

Query: 306 GIQPSVEHYA-----CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            +QPS  H+       ++ + +R  ++ EA     KMPVK     W A+L G   +  +E
Sbjct: 304 VVQPS-GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-WNAILSGCVNARRIE 361

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
               +     E+   +   + +M +  +Q G  +E  ++  QMK  GL
Sbjct: 362 EANSI---FREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGL 406


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 252/452 (55%), Gaps = 32/452 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI+SW  MI  Y+Q G  +E   L  +M      +P+ +T VS+L AC     + +   V
Sbjct: 194 DIISWTVMIGAYAQSGNGKEAYRLMLQM-EQEGFKPNAITYVSILNACASEGALKWVKRV 252

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   +++ +++D+ +  AL+ MYAK GS+D AR + D M  +D VS++ +I  +  HG  
Sbjct: 253 HRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRG 312

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A DLF                                +MQ  G +P+A+   SI +  
Sbjct: 313 HEAYDLFL-------------------------------QMQTEGCKPDAIMFLSILNAC 341

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L+  K+IH +A+ +  + ++ V TA++  Y+K+G +  A+ VFDR K R+++ W 
Sbjct: 342 ASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWN 401

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+IS  A HG    A+ +F  M  +G++PD VTF AVLSAC+H+GLVD+    + AM+  
Sbjct: 402 AMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV 461

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI+P V H  CMV +L RA R+ EA  F+  M V P    WGALL      G+VELG+ 
Sbjct: 462 YGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGEL 521

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V     +++P+N   Y++++N+Y++AG+WD    VR  M+E G+ K PGRSWIE    + 
Sbjct: 522 VAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIH 581

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            F+  D+S  + ++I    ++++  ++ EGY+
Sbjct: 582 DFLVADSSHPECKEINESKDKVIEKIKAEGYI 613



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K+   SWN+MIAGY +    E+   LFREM +  V +P+  T + +L+AC   S + +
Sbjct: 89  LVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV-QPNAGTYMIILKACASLSALKW 147

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH  +    ++ D+ +  AL+ MY KCGS++ AR + D + + D +S++ +I  Y  
Sbjct: 148 GKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAY-- 205

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         Q+   +    L+ +M+  G +PNA+T  SI
Sbjct: 206 -----------------------------AQSGNGKEAYRLMLQMEQEGFKPNAITYVSI 236

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    LK  K +H +A+    + ++ V TA++  YAK+G +  A+ VFDR K R +
Sbjct: 237 LNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDV 296

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I A+A HG   +A  LF +M   G +PD + F ++L+ACA +G ++    I + 
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKI-HR 355

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +   G++  V     +V + S++  I +A     +M V+     W A++ G +  G
Sbjct: 356 HALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQHG 411



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 183/408 (44%), Gaps = 79/408 (19%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           L  D    V VL+ C +  D++   +VH+ +I+S ++ +  + N L+ +Y +CG L  AR
Sbjct: 24  LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEAR 83

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + D +                              +K+ G ++WNA+I+G V++   E 
Sbjct: 84  CVFDAL------------------------------VKKSG-ASWNAMIAGYVEHKHAED 112

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            + L REM   GV+PNA T   I    +  S LK GKE+H        + ++ V TA++ 
Sbjct: 113 AMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLR 172

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y K G ++ A+R+FD      +I WT +I AYA  G+  +A  L  +M   G +P+ +T
Sbjct: 173 MYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232

Query: 278 FTAVLSAC-----------------------------------AHSGLVDKAWDIFNAMS 302
           + ++L+AC                                   A SG +D A  +F+ M 
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDV 359
            +      V  +  M+G  +   R  EA +   +M     KP A ++ ++L   + +G +
Sbjct: 293 VR-----DVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL 347

Query: 360 ELGKFVCDHLFEIEPE---NTGNYIIMANLYSQAGRWDEADRVREQMK 404
           E  K +  H  +   E     G  ++  ++YS++G  D+A  V ++MK
Sbjct: 348 EWVKKIHRHALDSGLEVDVRVGTALV--HMYSKSGSIDDARVVFDRMK 393



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 69/294 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN MI  +++ G   E   LF +M  +   +PD +  +S+L AC  +  + +
Sbjct: 291 MKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM-QTEGCKPDAIMFLSILNACASAGALEW 349

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H   ++S +++D+ +  AL+ MY+K GS+D AR + D M  ++ VS++A+ISG   
Sbjct: 350 VKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQ 409

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  + A+++F                               R M A GV+P+ VT  ++
Sbjct: 410 HGLGQDALEVF-------------------------------RRMTAHGVKPDRVTFVAV 438

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S  SH   +  G+  +  A+   Y  + ++     ++D   + G L  A+   D     
Sbjct: 439 LSACSHAGLVDEGRSQY-LAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFID----- 492

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
                                        N  + PD  T+ A+L +C   G V+
Sbjct: 493 -----------------------------NMAVDPDEATWGALLGSCRTYGNVE 517



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 49/294 (16%)

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
           N   EA++ L+  +Q  G+  ++     +        +L   K++H   +K+R ++N +V
Sbjct: 7   NTLSEAIVVLMNRLQ-RGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
              ++  Y + G L  A+ VFD    +S   W A+I+ Y  H  A  A+ LF EM + G+
Sbjct: 66  MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 272 QPDPVTFTAVLSACA----------------HSGL-------------------VDKAWD 296
           QP+  T+  +L ACA                H GL                   +++A  
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGA 353
           IF+ +     I  +V     M+G  +++    EA   + +M     KP+A  + ++L   
Sbjct: 186 IFDNLMNHDIISWTV-----MIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC 240

Query: 354 SISGDVELGKFVCDHLFEIEPE---NTGNYIIMANLYSQAGRWDEADRVREQMK 404
           +  G ++  K V  H  +   E     G  ++   +Y+++G  D+A  V ++MK
Sbjct: 241 ASEGALKWVKRVHRHALDAGLELDVRVGTALV--QMYAKSGSIDDARVVFDRMK 292


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/408 (39%), Positives = 231/408 (56%), Gaps = 33/408 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD VSWN+MIAGY+Q G +EE  A F+EM  + V  P+  T+V+VL AC QS  +  G  
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV-APNESTMVTVLSACAQSGSLELGNW 285

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V +++ +  +  +L + NALI MY+KCG LD AR                          
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR-------------------------- 319

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                DLF+ +    + +WN +I G    N ++  L L R+MQ S V PN VT  SI   
Sbjct: 320 -----DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 184 FSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            ++   L  GK IH Y  K      N  + T++ID YAK G +  A++VF   K +SL  
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W A+IS  A HG A+ A+ LF +M + G +PD +TF  VLSAC+H+GLV+     F++M 
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMV 494

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y I P ++HY CM+ +L RA    EA   +  M +KP   +WG+LL    + G+VELG
Sbjct: 495 EDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELG 554

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
           +F   HLFE+EPEN G Y++++N+Y+ AGRWD+  R+R ++ + G+ K
Sbjct: 555 EFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 208/433 (48%), Gaps = 39/433 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI G S           +  ML   V  P+  T   +L++C +      G ++H  V
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGV-EPNSYTFPFLLKSCAKVGATQEGKQIHGHV 158

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++  ++ D ++  +LI MYA+ G L YA  +  + S +D VS++A+I+GY + G ++ A 
Sbjct: 159 LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDAR 218

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF+ +      +WNA+I+G  Q+ R E  L   +EM+ + V PN  T+ ++ S  +   
Sbjct: 219 RLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSG 278

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G  +  +   +    N+ +  A+ID Y+K G L  A+ +F+    + +I W  +I 
Sbjct: 279 SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIG 338

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD---------------- 292
            Y+      +A++LF +M  + ++P+ VTF ++L ACA+ G +D                
Sbjct: 339 GYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 293 --------------KAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM 337
                         K  +I  A     G++P S+  +  M+  L+     + A E   +M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 338 P---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAG 391
                +P    +  +L   S +G VELG+     +   ++I P+   +Y  M +L  +AG
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK-LQHYGCMIDLLGRAG 517

Query: 392 RWDEADRVREQMK 404
            +DEA+ + + M+
Sbjct: 518 LFDEAEALMKNME 530



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 66/353 (18%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  A+ LF+ +++P    WN +I G   ++     +D    M   GV PN+ T   + 
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT------------------- 222
              +     + GK+IHG+ +K   + + +V T++I+ YA+                    
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 223 ------------GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
                       G L  A+R+F+    R  + W A+I+ YA  G   +A++ F EM    
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 271 IQPDPVTFTAVLSACAHSGLVD-----KAW----------DIFNAMSGQY---------- 305
           + P+  T   VLSACA SG ++     ++W           + NA+   Y          
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 306 ----GI-QPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
               GI +  +  +  M+G  S      EA     KM    V+P+   + ++L   +  G
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 358 DVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            ++LGK++  ++ +  +   NT  +  + ++Y++ G  + A +V   MK   L
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN+MI+G +  G       LFR+M +     PD +T V VL AC  +  +  
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEG-FEPDDITFVGVLSACSHAGLVEL 485

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
           G +  + ++E + I   L     +I +  + G  D A AL+  M  K D   + +++   
Sbjct: 486 GRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGAC 545

Query: 119 MVHGFVE 125
            VHG VE
Sbjct: 546 RVHGNVE 552


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 271/471 (57%), Gaps = 10/471 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  +N +I  +S G    +    + +ML S +  PD +T   +++A  +   +V G + 
Sbjct: 83  NLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIW-PDNITFPFLIKASTEMECVVVGEQT 141

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ ++    + D+++ N+L+ MYA CG +  A  +  +M  +D VS++++++GY   G V
Sbjct: 142 HSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMV 201

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A ++F  M    L TW+ +I+G  +NN  E  +DL   M+  GV  N   + S+ S  
Sbjct: 202 EDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSC 261

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +H   L+ G+  H Y VK+    N+ + TA++D Y + G +  A RVF+    +  + W+
Sbjct: 262 AHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWS 321

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II   A HG A KA+  F++M+  G  P  +T TAVLSAC+H GLVDK  +I+  M   
Sbjct: 322 SIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRD 381

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI+P +EHY C+V +L RA +++EA  F+ KMPVKP+A + GALL    I  + E+ + 
Sbjct: 382 YGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAER 441

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V + L E++PE++G Y++++N+Y+ AG+W++ + +R+ MKE  + K PG S IE  G + 
Sbjct: 442 VGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKIN 501

Query: 425 SF-VAKDTSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
            F +  D    +  +I  + E +LG +R  GY          +DE E+E+A
Sbjct: 502 KFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETA 552



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 30/190 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS------------------------- 35
           M  RD+VSW SM+AGY + G  E+ + +F EM +                          
Sbjct: 180 MPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239

Query: 36  PVLRPDGV-----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
            +++ +GV      +VSV+ +C     + FG   H +V++SH+ ++L +  AL+ MY +C
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRC 299

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G ++ A  + +E+ DKD +S+S+II G  VHG   KA+  F  M R G S  +  ++ ++
Sbjct: 300 GEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVL 359

Query: 151 QNNRHEAVLD 160
               H  ++D
Sbjct: 360 SACSHGGLVD 369



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 150/363 (41%), Gaps = 67/363 (18%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +++LQ+C   SD+     +H F++ +H+  D+++ + L+ + A C              D
Sbjct: 16  LALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLAL-ALC-------------VD 58

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                    + GY        A  +F  ++ P L  +N +I                 +M
Sbjct: 59  DSTFHKPTNLLGY--------AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQM 110

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             S + P+ +T   +    +    +  G++ H   V+  +  ++YV  +++  YA  G +
Sbjct: 111 LKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLI 170

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A R+F +   R ++ WT++++ Y   G    A  +F+EM +  +     T++ +++  
Sbjct: 171 AAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNL----FTWSIMINGY 226

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A +   +KA D+F  M  + G+   V +   MV V+S    +                  
Sbjct: 227 AKNNCFEKAIDLFELMKRE-GV---VANETVMVSVISSCAHL------------------ 264

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQ 402
            GAL +G               H + ++   T N I+   + ++Y + G  ++A RV E+
Sbjct: 265 -GALEFGERA------------HEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEE 311

Query: 403 MKE 405
           + +
Sbjct: 312 LPD 314


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 266/475 (56%), Gaps = 45/475 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V+W+++IAGY+Q G   E   +FR+M       P+ VT+VS+L  C  +  ++ G E 
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGS-EPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 65  HNFVIESHIKMD-------LWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAII 115
           H   I+  + +D       L + NALI MY+KC S   ARA+ D +  KD   V+++ +I
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            G   HG   +A++LF               S ++Q +                V PNA 
Sbjct: 450 GGNAQHGEANEALELF---------------SQMLQPDNF--------------VMPNAF 480

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFDR 234
           TIS      +    L+ G++IH Y ++NR++   ++VA  +ID Y+K+G +  A+ VFD 
Sbjct: 481 TISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDN 540

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R+ + WT++++ Y  HG   +A+ +F EM   G+ PD VTF  VL AC+HSG+VD+ 
Sbjct: 541 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQG 600

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            + FN M+  +G+ P  EHYACMV +LSRA R+ EA E +  MP+KP+  VW ALL    
Sbjct: 601 INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACR 660

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           +  +VELG++  + L E+E  N G+Y +++N+Y+ A  W +  R+R  MK +G+ K PG 
Sbjct: 661 VYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGC 720

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           SW++   G  +F A D S   S+QIY +L  L+  ++  GYV      L +V++E
Sbjct: 721 SWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDE 775



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 216/446 (48%), Gaps = 57/446 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSWNS++A Y QGG       +F  M     +RPD V++V+VL AC        G +V
Sbjct: 194 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 253

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + + S +  D+++ NA++ MYAKCG ++ A  + + M  KD VS++A+++GY   G  
Sbjct: 254 HGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 313

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + A+ LF+ ++   +     TW+AVI+G  Q       LD+ R+M+  G  PN VT+ S+
Sbjct: 314 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSL 373

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-------NRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            S  +    L  GKE H +A+K       N    ++ V  A+ID Y+K      A+ +FD
Sbjct: 374 LSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFD 433

Query: 234 RF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAH-- 287
               K RS++ WT +I   A HG+A++A+ LF++ML  +N + P+  T +  L ACA   
Sbjct: 434 LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG 493

Query: 288 ----------------------------------SGLVDKAWDIFNAMSGQYGIQPSVEH 313
                                             SG VD A  +F+ M  + G+  S   
Sbjct: 494 ALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGV--SWTS 551

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---F 370
                G+  R     +    + K+ + P    +  +LY  S SG V+ G    + +   F
Sbjct: 552 LMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDF 611

Query: 371 EIEPENTGNYIIMANLYSQAGRWDEA 396
            + P    +Y  M +L S+AGR DEA
Sbjct: 612 GVVP-GAEHYACMVDLLSRAGRLDEA 636



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 35/313 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S   +  WN +I      GF E+   L+R M      RPD  T   VL+ACG+      G
Sbjct: 87  SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRM-QRLGWRPDHYTFPFVLKACGEIPSFRCG 145

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGY 118
             VH  V  S  + ++++ N L+ MY +CG+ + AR + DEM ++   D VS+++I++ Y
Sbjct: 146 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 205

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           M  G   +AM +F+ M                         DL       G+RP+AV++ 
Sbjct: 206 MQGGDSIRAMKMFERMTE-----------------------DL-------GIRPDAVSLV 235

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++    +       GK++HGYA+++    +++V  A++D YAK G +  A +VF+R K +
Sbjct: 236 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 295

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+++ Y+  G    A+ LF ++    I+ + VT++AV++  A  GL  +A D+F
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 299 NAMSGQYGIQPSV 311
             M    G +P+V
Sbjct: 356 RQMR-LCGSEPNV 367



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 137/306 (44%), Gaps = 19/306 (6%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGV 170
           IIS Y+      KA+ + + +  P   T   WN +I   V     E VL L R MQ  G 
Sbjct: 64  IISMYLTFNSPAKALSVLRRL-HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 122

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RP+  T   +        + + G  +H     + ++ N++V   ++  Y + G    A++
Sbjct: 123 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 182

Query: 231 VFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACA 286
           VFD  + R    L+ W +I++AY   GD+ +A+ +F  M  + GI+PD V+   VL ACA
Sbjct: 183 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 242

Query: 287 HSGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
             G    AW     + G   + G+   V     +V + ++   + EA +   +M VK   
Sbjct: 243 SVG----AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 298

Query: 344 KVWGALLYGASISG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
             W A++ G S  G  D  LG F      +IE        ++A  Y+Q G   EA  V  
Sbjct: 299 S-WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAG-YAQRGLGFEALDVFR 356

Query: 402 QMKESG 407
           QM+  G
Sbjct: 357 QMRLCG 362


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 254/473 (53%), Gaps = 38/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++VSW ++I GY + G + E   LFR +L    LRPD  T+V +L AC +  D+  
Sbjct: 163 IPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMG-LRPDSFTLVRILYACSRVGDLAS 221

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++ ES    ++++  +L+ MYAKCGS++ AR + D M +KD V           
Sbjct: 222 GRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVV----------- 270

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+I G   N   +  LD+  EMQ   VRP+   +  +
Sbjct: 271 --------------------CWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGV 310

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  S    L+ G    G    + +  N  + TA+ID YAK G +  A+ VF   + +  
Sbjct: 311 FSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDC 370

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           +++ A+IS  A  G    A  +F +M+  G+QPD  TF  +L  C H+GLVD     F+ 
Sbjct: 371 VVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSG 430

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + + P++EHY CMV + +RA  + EA + +  MP++ ++ VWGALL G  +  D +
Sbjct: 431 MSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQ 490

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   L E+EP N+G+Y++++N+YS + RWDEA+++R  + + G+ K+PG SW+E  
Sbjct: 491 LAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVD 550

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAY 467
           G +  F+  DTS   S +IY  LE L   +RE GY      VL D  EEE  Y
Sbjct: 551 GVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEY 603



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 188/396 (47%), Gaps = 36/396 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV-FGME 63
           +I  +N++I G      + +  +++  M       PD  T   VL+AC +       G+ 
Sbjct: 65  NIFLYNTLIRGMVSNDAFRDAVSVYASMRQHG-FAPDNFTFPFVLKACTRLPHYFHVGLS 123

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+ VI++    D+++   L+ +Y+K G L  AR + DE+ +K+ VS++AII GY+  G 
Sbjct: 124 LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A+ LF+               GL++                 G+RP++ T+  I   
Sbjct: 184 FGEALGLFR---------------GLLE----------------MGLRPDSFTLVRILYA 212

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +L  G+ I GY  ++    N++VAT+++D YAK G +  A+RVFD    + ++ W
Sbjct: 213 CSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCW 272

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +A+I  YA++G   +A+ +F EM    ++PD      V SAC+  G ++        M G
Sbjct: 273 SALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDG 332

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
              +   V   A ++   ++   +++A E    M  K    V+ A++ G ++ G V    
Sbjct: 333 DEFLSNPVLGTA-LIDFYAKCGSVAQAKEVFKGMRRKDCV-VFNAVISGLAMCGHVGAAF 390

Query: 364 FVCDHLFEIEPENTGN-YIIMANLYSQAGRWDEADR 398
            V   + ++  +  GN ++ +    + AG  D+  R
Sbjct: 391 GVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHR 426



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 21/282 (7%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            + A  +F     P +  +N +I G+V N+     + +   M+  G  P+  T   +   
Sbjct: 51  TQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKA 110

Query: 184 FSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            +   +    G  +H   +K  +D +++V T ++  Y+K GFL  A++VFD    ++++ 
Sbjct: 111 CTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVS 170

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG-LVDKAW-DIFNA 300
           WTAII  Y   G   +A+ LF  +L  G++PD  T   +L AC+  G L    W D +  
Sbjct: 171 WTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMR 230

Query: 301 MSGQYG---IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            SG  G   +  S+       G +  ARR+ +         V+     W AL+ G + +G
Sbjct: 231 ESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM-------VEKDVVCWSALIQGYASNG 283

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
              + K   D  FE++ EN     +  + Y+  G +    R+
Sbjct: 284 ---MPKEALDVFFEMQREN-----VRPDCYAMVGVFSACSRL 317


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 271/479 (56%), Gaps = 49/479 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+W ++IAGYSQ G   E   +FR+M+ S  L P+ VT++SVL AC        GME+
Sbjct: 220 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGMEI 278

Query: 65  HNFVIESHIKM----------DLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYS 112
           H + +++ +            DL + NALI MY+KC S   AR++ D+  + +++ V+++
Sbjct: 279 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 338

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            +I G+  +G    A+ LF                           ++++ E    GV P
Sbjct: 339 VMIGGHAQYGDSNDALKLF---------------------------VEMISE--PYGVAP 369

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIY-VATAIIDTYAKTGFLHGAQR 230
           NA TIS I    +H + ++ GK+IH Y +++ +YD + Y VA  +I+ Y+K G +  A+ 
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 429

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD    +S I WT++++ Y  HG  S+A+ +F++M   G  PD +TF  VL AC+H G+
Sbjct: 430 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 489

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VD+    F++MS  YG+ P  EHYA  + +L+R  R+ +A + V  MP++P+A VW ALL
Sbjct: 490 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 549

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               +  +VEL +   + L E+  EN G+Y +++N+Y+ AGRW +  R+R  MK+SG+ K
Sbjct: 550 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 609

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            PG SW++   G  SF   D S   S QIY +LE L+  ++  GYV      L +V+EE
Sbjct: 610 RPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 668



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 25/377 (6%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML----NSPV-LRPDGVTVVSVLQACGQSSDIV 59
           D++SWNS+++ + +         LF +M       P   R D +++V++L ACG    + 
Sbjct: 78  DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 137

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              EVH   I +   +D+++ NALI  YAKCG ++ A  + + M  KD VS++A+++GY 
Sbjct: 138 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 197

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             G  + A +LF+ M++  +     TW AVI+G  Q       L++ R+M  SG  PN V
Sbjct: 198 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 257

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRY----------DRNIYVATAIIDTYAKTGFL 225
           TI S+ S  +       G EIH Y++KN            D ++ V  A+ID Y+K    
Sbjct: 258 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 317

Query: 226 HGAQRVFDR--FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAV 281
             A+ +FD    + R+++ WT +I  +A +GD++ A+ LF EM++   G+ P+  T + +
Sbjct: 318 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 377

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMPVK 340
           L ACAH   +     I   +   +    S    A C++ + S+   +  A      M  K
Sbjct: 378 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 437

Query: 341 PSAKVWGALLYGASISG 357
            SA  W +++ G  + G
Sbjct: 438 -SAISWTSMMTGYGMHG 453



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 132/266 (49%), Gaps = 28/266 (10%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           R D  T+  VL+ACG+      G   H  +  +  + +++ICNAL+ MY++CGSL+ A  
Sbjct: 7   RLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASM 66

Query: 99  LLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           + DE++ +   D +S+++I+S ++       A+DLF  M                     
Sbjct: 67  IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT-------------------- 106

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
                L+   + +  R + ++I +I         +   KE+HG A++N    +++V  A+
Sbjct: 107 -----LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 161

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           ID YAK G +  A +VF+  + + ++ W A+++ Y+  G+   A  LF  M    I  D 
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAM 301
           VT+TAV++  +  G   +A ++F  M
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQM 247



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 14/254 (5%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M  +G R +  T+  +        + + G   HG    N ++ N+++  A++  Y++ G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 225 LHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEML------NNGIQPDP 275
           L  A  +FD    R +   I W +I+SA+    +A  A+ LF++M           + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 276 VTFTAVLSACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
           ++   +L AC     V +  ++  NA+     +   V +   ++   ++   +  A +  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVF 178

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           + M  K     W A++ G S SG+ +   +   +   E  P +   +  +   YSQ G  
Sbjct: 179 NMMEFKDVVS-WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 237

Query: 394 DEADRVREQMKESG 407
            EA  V  QM  SG
Sbjct: 238 HEALNVFRQMIFSG 251


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 257/462 (55%), Gaps = 33/462 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+V WN++I GY++ G   +   +F+EM+    +RP+  T++ ++ AC +S ++  G  
Sbjct: 169 KDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRA 228

Query: 64  VHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H ++++  + +  + +  ALI +Y KCG LD AR                         
Sbjct: 229 IHGYMMKDMVLREGVKLEAALINLYVKCGYLDGAR------------------------- 263

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                  LF  +       WN++I G  Q      V++L+REM  S ++P+  T+S + S
Sbjct: 264 ------KLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLS 317

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +       G  +H +A K +   ++++ TA+ID YAK GF+  A++VFD+   R++  
Sbjct: 318 ACAQMGAFNLGNWVHRFAEK-KGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVAT 376

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W AI+S YA+HG A  A+ LF+EM  +G +PD +TF AVL ACAHSGLV+     F+ M 
Sbjct: 377 WNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLML 436

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y I P VEHY CMV +L RA  + EA E +  M V+P+  VWGALL   SI G++E+G
Sbjct: 437 QYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIG 496

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           ++   H+ ++   + G+Y+I+ANLY+ A R++    VRE M E G+ K  G S IE    
Sbjct: 497 EWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDV 556

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
           +  FV  D    +SE+IY +L+ L   ++  GYV L  ++EE
Sbjct: 557 VHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVPLLALDEE 598



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 185/438 (42%), Gaps = 81/438 (18%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N+MI  YS         +++ +M     +  D  T   V +AC     +  G EVH  +
Sbjct: 72  YNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVI 131

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +    ++D ++ ++L+  Y  CG +  A+ + DE   KD V ++A+I+GY   G V  + 
Sbjct: 132 VRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSF 191

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F+ M                              ++   VRPN  T+  +        
Sbjct: 192 GVFKEM------------------------------VEVKEVRPNEGTMMGLIVACIESK 221

Query: 189 NLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           NLK G+ IHGY +K+   R  + +  A+I+ Y K G+L GA+++FD    ++ ++W ++I
Sbjct: 222 NLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLI 281

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA------------W 295
             Y   G  ++ + L  EM  + ++PD  T + VLSACA  G  +              W
Sbjct: 282 CGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW 341

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------SEA 330
           D+F   +        ++ YA   G +  AR++                           A
Sbjct: 342 DVFIGTA-------LIDMYA-KCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESA 393

Query: 331 TEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMAN 385
            E  S+M     +P +  + A+L+  + SG VE GK   D + +    P    +Y  M +
Sbjct: 394 IELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVD 453

Query: 386 LYSQAGRWDEADRVREQM 403
           L  +AG   EA  + + M
Sbjct: 454 LLGRAGLLQEARELIKMM 471



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 43/261 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++ V WNS+I GY Q G   E   L REM  S  L+PD  TV  VL AC Q      
Sbjct: 269 IPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSN-LKPDRFTVSGVLSACAQMGAFNL 327

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH F  +  I  D++I  ALI MYAKCG +  AR + D+M++++  +++AI+SGY  
Sbjct: 328 GNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYAS 386

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A++LF  M+                                SG RP+++T  ++
Sbjct: 387 HGQAESAIELFSEMRE-------------------------------SGARPDSITFLAV 415

Query: 181 FSLFSHFSNLKGGKE-----IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
               +H   ++ GK+     +  Y +  R +        ++D   + G L  A+ +    
Sbjct: 416 LHACAHSGLVENGKQYFDLMLQYYKIPPRVEH----YGCMVDLLGRAGLLQEARELIKMM 471

Query: 236 KGR-SLIIWTAIISAYAAHGD 255
               ++++W A++SA + HG+
Sbjct: 472 VVEPNVVVWGALLSACSIHGN 492



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 159/354 (44%), Gaps = 43/354 (12%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +A++++  +S   +   + II+ ++ H  ++ A  +F   + P    +NA+I     +  
Sbjct: 26  HAKSIISSLS-YTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQT 84

Query: 155 HEAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
               + +  +M+A   +  +  T   +F   +    ++ GKE+HG  V+  Y+ + ++ +
Sbjct: 85  PCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQS 144

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQ 272
           ++++ Y   G +  AQ+VFD F  + ++ W A+I+ YA  G    +  +F EM+    ++
Sbjct: 145 SLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVR 204

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+  T   ++ AC  S  +     I   M     ++  V+  A ++ +  +   +  A +
Sbjct: 205 PNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARK 264

Query: 333 FVSKMPVKPSAKVWGALLYG----ASISGDVELGKFVCDHLFEIEPE------------- 375
              ++P K +  VW +L+ G     S++  +EL + +  HL  ++P+             
Sbjct: 265 LFDEIPEKNTV-VWNSLICGYCQIGSLNEVIELLREM--HLSNLKPDRFTVSGVLSACAQ 321

Query: 376 ----NTGNYI----------------IMANLYSQAGRWDEADRVREQMKESGLA 409
               N GN++                 + ++Y++ G    A +V +QM E  +A
Sbjct: 322 MGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVA 375



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++R++ +WN++++GY+  G  E    LF EM  S   RPD +T ++VL AC  S  +  
Sbjct: 369 MNERNVATWNAILSGYASHGQAESAIELFSEMRESGA-RPDSITFLAVLHACAHSGLVEN 427

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIIS 116
           G +  + +++ +    +++ + C  ++ +  + G L  AR L+  M  + + V + A++S
Sbjct: 428 GKQYFDLMLQYYKIPPRVEHYGC--MVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLS 485

Query: 117 GYMVHGFVE 125
              +HG +E
Sbjct: 486 ACSIHGNIE 494



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 15/191 (7%)

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T  S+ +L    +N++  K+IH  ++ +      ++ T II+++     L  A +VF++ 
Sbjct: 5   TPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQT 64

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKA 294
           +     I+ A+I AY++      A+S++N+M     I  D  T+  V  ACA    V+K 
Sbjct: 65  QEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKG 124

Query: 295 WDIFNAMSGQYG------IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
            ++   +  + G      +Q S+ ++  + G +  A+++ +  EF +K  V      W A
Sbjct: 125 KEVHGVIV-RIGYELDGFLQSSLLNFYMVCGEIGNAQQVFD--EFDAKDVV-----FWNA 176

Query: 349 LLYGASISGDV 359
           L+ G +  G V
Sbjct: 177 LITGYARQGMV 187


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 241/414 (58%), Gaps = 2/414 (0%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+ +T   +  AC     ++ G  +H   I+S    D++   AL+ MYAK G L  AR +
Sbjct: 8   PNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQV 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            DEM+ +D  +++++I+GY   G +E A++LF++M    + +W  +ISG  QN  +   L
Sbjct: 68  FDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKAL 127

Query: 160 DLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           ++  +M+    VRPN VTI+S+FS  +    L+ G+ I  YA  N   +N+YV+  +++ 
Sbjct: 128 EMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEM 187

Query: 219 YAKTGFLHGAQRVFDRF-KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
           YA+ G +  A+ VF+   K R+L  W +++   A HG +++A+ L+++ML  GI+PD VT
Sbjct: 188 YARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVT 247

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           F  ++ AC H GLV K W +F +M   + I P +EHY CMV +L RA  + EA + V  M
Sbjct: 248 FVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSM 307

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
           P+KP + +WG LL   S   +VE  +   + LF++EP N GNY+I+ N+Y+ A RWD   
Sbjct: 308 PMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDGVA 367

Query: 398 RVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
           ++R+ MK   + K  G S IE  G +  F+ +D S  +  +IY +L  +   M+
Sbjct: 368 KLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLNEISTKMK 421



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R +VSW +MI+GYSQ G Y +   +F +M     +RP+ VT+ SV  AC +   +  
Sbjct: 102 MPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEV 161

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV-SYSAIISGYM 119
           G  + ++  ++ +  +L++ N L+ MYA+CG +D AR + +E+  +  + S+++++ G  
Sbjct: 162 GERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLA 221

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           VHG   +A+ L+  M   G+   +    GL+    H
Sbjct: 222 VHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTH 257



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   G  PN +T + +F   + F +L  GK IH + +K+ +D ++Y  TA++D YAK G 
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A++VFD    R +  W ++I+ Y+  GD   A+ LF  M +  +    V++T ++S 
Sbjct: 61  LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSV----VSWTTMISG 116

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQP------SVEHYACMVGVLSRARRISEATEFVSKMP 338
            + +G+  KA ++F  M     ++P      SV      +G L    RI     +     
Sbjct: 117 YSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIE---SYARDNG 173

Query: 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398
           +  +  V   LL   +  G ++  + V + + +     + N ++M    +  GR +EA +
Sbjct: 174 LMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMG--LAVHGRSNEALQ 231

Query: 399 VREQMKESGL 408
           + +QM   G+
Sbjct: 232 LYDQMLGEGI 241


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 250/455 (54%), Gaps = 10/455 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + +MI  Y+    +     L+R M+      P+      VL++C Q         V
Sbjct: 118 NVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMV 177

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGS-LDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           H  V+ S  +    +  AL+  Y +  S ++ AR L DEM++++ VS++A+ISGY   G 
Sbjct: 178 HCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQ 237

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-------SGVRPNAVT 176
           +  A+ LF+ M    + +WNA+I+G  QN      L L R M A        G RPN VT
Sbjct: 238 IGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVT 297

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
                S   H   L+ GK IHGY  +N    + +V+ A++D Y K G L  A+RVFDR  
Sbjct: 298 AVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTL 357

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLN--NGIQPDPVTFTAVLSACAHSGLVDKA 294
            RSL  W ++I+  A HG +  A+S+F EM+   +G++PD VTF  +L+AC H GLV+K 
Sbjct: 358 ERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKG 417

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           W  F  M+  YGI+P +EHY C+V +L RA +  EA E V  M ++P   +WG+LL G  
Sbjct: 418 WLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCK 477

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           I G  +L +F    L +++P N G  I++AN+Y + G+WDE  +VR+ +KE    K PG 
Sbjct: 478 IHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGC 537

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGL 449
           SWIE    +  F + D +  ++E+IY  LE L+ L
Sbjct: 538 SWIEIDNQVHQFYSVDKTHPRTEEIYNTLESLISL 572



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 37/267 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV------LRPDGVTVVSVLQACGQ 54
           M +RD+ SWN++IAGY+Q G + E  +LFR M+           RP+ VT V  L ACG 
Sbjct: 248 MPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGH 307

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           +  +  G  +H +V  + + +D ++ NAL+ MY KCG L  AR + D   ++   S++++
Sbjct: 308 TGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSM 367

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I+   +HG  + A+ +F+ M   G                             SGV+P+ 
Sbjct: 368 INCLALHGQSQNAISVFEEMMTCG-----------------------------SGVKPDE 398

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           VT   + +  +H   ++ G        +N   +  I     ++D   + G    A  V  
Sbjct: 399 VTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVR 458

Query: 234 RFK-GRSLIIWTAIISAYAAHGDASKA 259
             +     +IW ++++    HG    A
Sbjct: 459 GMRIEPDEVIWGSLLNGCKIHGHTDLA 485



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 150/367 (40%), Gaps = 62/367 (16%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR-----PGLSTWNAVI 146
           +L YAR + D +   +   Y+A+I+ Y  H     A+ L++ M R     P    +  V+
Sbjct: 103 NLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVL 162

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF-SNLKGGKEIHGYAVKNRY 205
               Q     +   +  ++  SG     V  +++   +  F S+++  + +         
Sbjct: 163 KSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLL----FDEMT 218

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           +RN+   TA+I  Y + G +  A  +F+    R +  W A+I+ Y  +G   +A+SLF  
Sbjct: 219 ERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRR 278

Query: 266 ML-------NNGIQPDPVTFTAVLSACAHSGLVDKA-W------------DIF--NAMSG 303
           M+         G +P+ VT    LSAC H+G++    W            D F  NA+  
Sbjct: 279 MIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVD 338

Query: 304 QYG---------------IQPSVEHYACMVGVLSRARRISEATEFVSKM-----PVKPSA 343
            YG               ++ S+  +  M+  L+   +   A     +M      VKP  
Sbjct: 339 MYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDE 398

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------NYIIMANLYSQAGRWDEAD 397
             +  LL   +  G VE G       FE+  +N G      +Y  + +L  +AG+++EA 
Sbjct: 399 VTFIGLLNACTHGGLVEKGWLY----FELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAM 454

Query: 398 RVREQMK 404
            V   M+
Sbjct: 455 EVVRGMR 461


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 269/471 (57%), Gaps = 8/471 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++V +N++++ Y++ G   E  A+  EML     RPD VT++S + A  Q  D+ +G  
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQQGP-RPDRVTMLSAISASAQLVDLFYGKV 354

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H +VI + ++    I N +I MY KCG  + A  + D MS+K  VS++++ +G++ +G 
Sbjct: 355 CHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGD 414

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A ++F  +       WN +ISGLVQ +  E  ++L REMQ  G++ + VT+  I S 
Sbjct: 415 VESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASA 474

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
             +    +  K +H Y  KN    ++ + TA++D +A+ G    A +VF++   R +  W
Sbjct: 475 CGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAW 534

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA I   A  G+   A  LFN+ML  G++PD V F  VL+AC+H G V++   IF+ M  
Sbjct: 535 TAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME- 593

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            +GI P +EHY CMV +L RA  + EA + +  MP++P+  VWG+LL    +  +VE+  
Sbjct: 594 DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMAT 653

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  + + E+ P+  G +++++N+Y+ AG+W +  RVR  ++E G+ K+PG S ++ +G +
Sbjct: 654 YAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVI 713

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAYV 468
             F + D S  +   I L+L+ +     + G+      VLLD  E+E  Y+
Sbjct: 714 HEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYL 764



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 199/471 (42%), Gaps = 117/471 (24%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSW S+I GY++G   +E  +LF EM+ + + RP  VT+V V+ AC +  D+  
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGI-RPSSVTMVCVISACAKLRDLDM 250

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  ++ E  +K++  + NAL+ MY KCG++D A+ L DE  D++ V Y+ I+S Y  
Sbjct: 251 GERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYAR 310

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+                            A+LD   EM   G RP+ VT+ S 
Sbjct: 311 QGLAREAL----------------------------AILD---EMLQQGPRPDRVTMLSA 339

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L  GK  HGY ++N  +    +   IID Y K G    A RVFD    +++
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399

Query: 241 IIWTAIISAYAAHGDASK-------------------------------AVSLFNEMLNN 269
           + W ++ + +  +GD                                  A+ LF EM   
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGE 459

Query: 270 GIQPDPVTFTAVLSACAHSG--------------------------LVD---------KA 294
           GI+ D VT   + SAC + G                          LVD          A
Sbjct: 460 GIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSA 519

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLY 351
             +FN M+     +  V  +   +G ++       AT   ++M    VKP   ++  +L 
Sbjct: 520 MQVFNKMT-----ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLT 574

Query: 352 GASISGDVELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEA 396
             S  G VE G     H+F       I P+   +Y  M +L  +AG   EA
Sbjct: 575 ACSHGGQVEQGL----HIFSLMEDHGISPQ-IEHYGCMVDLLGRAGLLREA 620



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 34/283 (12%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           NS+I GYS  G   E   L+  ML   V  P+  T   VL  C + +    G++VH  V+
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGV-TPNHYTFPFVLSGCTKIAAFCEGIQVHGSVV 158

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +  ++ D++I N LI  YA+CG +D+   + + MS+++ VS                   
Sbjct: 159 KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVS------------------- 199

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
                       W ++I G  + +R +  + L  EM  +G+RP++VT+  + S  +   +
Sbjct: 200 ------------WTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRD 247

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L  G+ +  Y  +     N  +  A++D Y K G +  A+R+FD    R+L+++  I+S 
Sbjct: 248 LDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSN 307

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           YA  G A +A+++ +EML  G +PD VT  + +SA A   LVD
Sbjct: 308 YARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVD 348



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD+ +W + I   +  G  E    LF +ML   V +PD V  V VL AC     +  
Sbjct: 526 MTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGV-KPDVVLFVQVLTACSHGGQVEQ 584

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYM 119
           G+ + + + +  I   +     ++ +  + G L  A  L+  M  + ++V + ++++   
Sbjct: 585 GLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACR 644

Query: 120 VHGFVEKA 127
           VH  VE A
Sbjct: 645 VHKNVEMA 652


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 271/479 (56%), Gaps = 49/479 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+W ++IAGYSQ G   E   +FR+M+ S  L P+ VT++SVL AC        GME+
Sbjct: 327 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGMEI 385

Query: 65  HNFVIESHIKM----------DLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYS 112
           H + +++ +            DL + NALI MY+KC S   AR++ D+  + +++ V+++
Sbjct: 386 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 445

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
            +I G+  +G    A+ LF                           ++++ E    GV P
Sbjct: 446 VMIGGHAQYGDSNDALKLF---------------------------VEMISE--PYGVAP 476

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIY-VATAIIDTYAKTGFLHGAQR 230
           NA TIS I    +H + ++ GK+IH Y +++ +YD + Y VA  +I+ Y+K G +  A+ 
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 536

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD    +S I WT++++ Y  HG  S+A+ +F++M   G  PD +TF  VL AC+H G+
Sbjct: 537 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 596

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VD+    F++MS  YG+ P  EHYA  + +L+R  R+ +A + V  MP++P+A VW ALL
Sbjct: 597 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 656

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               +  +VEL +   + L E+  EN G+Y +++N+Y+ AGRW +  R+R  MK+SG+ K
Sbjct: 657 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 716

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            PG SW++   G  SF   D S   S QIY +LE L+  ++  GYV      L +V+EE
Sbjct: 717 RPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 775



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 25/377 (6%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML----NSPV-LRPDGVTVVSVLQACGQSSDIV 59
           D++SWNS+++ + +         LF +M       P   R D +++V++L ACG    + 
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 244

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              EVH   I +   +D+++ NALI  YAKCG ++ A  + + M  KD VS++A+++GY 
Sbjct: 245 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 304

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             G  + A +LF+ M++  +     TW AVI+G  Q       L++ R+M  SG  PN V
Sbjct: 305 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 364

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRY----------DRNIYVATAIIDTYAKTGFL 225
           TI S+ S  +       G EIH Y++KN            D ++ V  A+ID Y+K    
Sbjct: 365 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 424

Query: 226 HGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAV 281
             A+ +FD    + R+++ WT +I  +A +GD++ A+ LF EM++   G+ P+  T + +
Sbjct: 425 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 484

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMPVK 340
           L ACAH   +     I   +   +    S    A C++ + S+   +  A      M  K
Sbjct: 485 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 544

Query: 341 PSAKVWGALLYGASISG 357
            SA  W +++ G  + G
Sbjct: 545 -SAISWTSMMTGYGMHG 560



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 29/298 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN +I  + + G  +    +   ML +   R D  T+  VL+ACG+      G   H 
Sbjct: 83  VWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RLDHFTLPHVLKACGELPSYRCGSAFHG 141

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGF 123
            +  +  + +++ICNAL+ MY++CGSL+ A  + DE++ +   D +S+++I+S ++    
Sbjct: 142 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+DLF  M                          L+   + +  R + ++I +I   
Sbjct: 202 AWTALDLFSKMT-------------------------LIVHEKPTNERSDIISIVNILPA 236

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                 +   KE+HG A++N    +++V  A+ID YAK G +  A +VF+  + + ++ W
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 296

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            A+++ Y+  G+   A  LF  M    I  D VT+TAV++  +  G   +A ++F  M
Sbjct: 297 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 132/307 (42%), Gaps = 14/307 (4%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +++ Y+  G  + A+ + + +       WN +I   ++  R ++ +++   M  +G R
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
            +  T+  +        + + G   HG    N ++ N+++  A++  Y++ G L  A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 232 FDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEML------NNGIQPDPVTFTAVL 282
           FD    R +   I W +I+SA+    +A  A+ LF++M           + D ++   +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 283 SACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
            AC     V +  ++  NA+     +   V +   ++   ++   +  A +  + M  K 
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVFNMMEFKD 292

Query: 342 SAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
               W A++ G S SG+ +   +   +   E  P +   +  +   YSQ G   EA  V 
Sbjct: 293 VVS-WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 401 EQMKESG 407
            QM  SG
Sbjct: 352 RQMIFSG 358


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 258/456 (56%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SW S+IAGY+Q    +E   L   ML     +P+G T  S+L+A G S+    
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGR-FKPNGFTFASLLKAAGASASSGI 183

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 184 GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS---------- 233

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E  L +  EMQ +G      T SS+
Sbjct: 234 ---------------------WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSV 272

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+    + +V   I+D YAK+G +  A++VFDR   + +
Sbjct: 273 FSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDV 332

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++A+A +G   +AV+ F EM   G+  + +TF ++L+AC+H GLV +    F+ 
Sbjct: 333 VTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDM 392

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P ++HY  +V +L RA  +++A  F+ KMP+KP+A VWGALL    +  + +
Sbjct: 393 MK-EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAK 451

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+FE++P++TG  +++ N+Y+  G+WD A RVR+ MK +G+ K P  SW+E  
Sbjct: 452 IGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIE 511

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  +SE+IY   E +   +R+ GYV
Sbjct: 512 NSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 547



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 37/264 (14%)

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           RE+  +P L        S++ AC +   +     +H  +  S     +++ N+LI +Y K
Sbjct: 58  RELAATPRLYH------SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCK 111

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG++  AR + D M  +D                               + +W ++I+G 
Sbjct: 112 CGAVADARRVFDGMPARD-------------------------------MCSWTSLIAGY 140

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            QN+  +  L L+  M     +PN  T +S+       ++   G++IH   VK  +  ++
Sbjct: 141 AQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDV 200

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           YV +A++D YA+ G +  A  VFD+ + ++ + W A+I+ +A  GD    + +F EM  N
Sbjct: 201 YVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRN 260

Query: 270 GIQPDPVTFTAVLSACAHSGLVDK 293
           G +    T+++V SA A  G +++
Sbjct: 261 GFEATHFTYSSVFSAIAGIGALEQ 284


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 261/474 (55%), Gaps = 40/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++DI+SW +MI G ++ G   E  A+F++M  +  L+P+ VT  S+L AC   + + +
Sbjct: 507 MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG-LKPNRVTYTSILNACSSPAALDW 565

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  VIE+ +  D  + N L+ MY+ CGS+  AR + D                   
Sbjct: 566 GRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDR------------------ 607

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                        M +  +  +NA+I G   +N  +  L L   +Q  G++P+ VT  ++
Sbjct: 608 -------------MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 654

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  ++  +L+  KEIH   +K+ Y  +  +  A++ TYAK G    A  VFD+   R++
Sbjct: 655 LNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNV 714

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W AII   A HG     + LF  M   GI+PD VTF ++LSAC+H+GL+++    F +
Sbjct: 715 ISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCS 774

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  +GI P++EHY CMV +L RA ++ E    +  MP + + ++WGALL    I G+V 
Sbjct: 775 MSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVP 834

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   +   +++P+N   Y+ ++++Y+ AG WD A ++R+ M++ G+ K PGRSWIE  
Sbjct: 835 VAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVG 894

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
             L  FVA+D S  +SE+IY  L++L   M+ EGYV         +DE E+E+A
Sbjct: 895 DKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENA 948



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 195/410 (47%), Gaps = 37/410 (9%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++R + SWN+M+ GY Q G+ EE   L REM     L     T + +L +C   S +  G
Sbjct: 205 TERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHG-LALGRATTMRLLSSCKSPSALECG 263

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H   +++ +  D+ + N ++ MYAKCGS+  AR + D+M  K  VS++ II GY   
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  E A ++FQ                               +MQ  GV PN +T  ++ 
Sbjct: 324 GHSEIAFEIFQ-------------------------------KMQQEGVVPNRITYINVL 352

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           + FS  + LK GK +H + +   ++ ++ V TA++  YAK G     ++VF++   R LI
Sbjct: 353 NAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 412

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  +I   A  G+  +A  ++++M   G+ P+ +T+  +L+AC +   +    +I + +
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS--GDV 359
             + G    +     ++ + +R   I +A    +KM V+     W A++ G + S  G  
Sbjct: 473 V-KDGFMFDISVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSGLGAE 530

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
            L  F       ++P N   Y  + N  S     D   R+ +Q+ E+GLA
Sbjct: 531 ALAVFQDMQQAGLKP-NRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 197/411 (47%), Gaps = 41/411 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +VSW  +I GY+  G  E    +F++M    V+ P+ +T ++VL A    + + +
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVV-PNRITYINVLNAFSGPAALKW 363

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+ ++ +  + DL +  AL+ MYAKCGS    R + +++ ++D ++++ +I G   
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+A +++                                +MQ  G+ PN +T   +
Sbjct: 424 GGNWEEASEIYH-------------------------------QMQREGMMPNKITYVIL 452

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +   + + L  G+EIH   VK+ +  +I V  A+I  YA+ G +  A+ +F++   + +
Sbjct: 453 LNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDI 512

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+I   A  G  ++A+++F +M   G++P+ VT+T++L+AC+    +D    I   
Sbjct: 513 ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQ 572

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGD 358
           +  + G+         +V + S    + +A +   +M  +     + A++  Y A   G 
Sbjct: 573 VI-EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIV-AYNAMIGGYAAHNLGK 630

Query: 359 VELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
             L  F  D L E  ++P+    YI M N  + +G  + A  +   + + G
Sbjct: 631 EALKLF--DRLQEEGLKPDKV-TYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 33/248 (13%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           R +    + +L+ C +  D+V G EVH  +I+    +D +  NALI MY +CGS++ AR 
Sbjct: 138 RVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQ 197

Query: 99  LLDEMSDKDEV--SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + ++++  +    S++A++ GY+ +G++E+A+ L                          
Sbjct: 198 VWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLL------------------------- 232

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
                 REMQ  G+     T   + S     S L+ G+EIH  A+K R   ++ VA  I+
Sbjct: 233 ------REMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCIL 286

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           + YAK G +H A+ VFD+ + +S++ WT II  YA  G +  A  +F +M   G+ P+ +
Sbjct: 287 NMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRI 346

Query: 277 TFTAVLSA 284
           T+  VL+A
Sbjct: 347 TYINVLNA 354



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           +D+V+ +Q  G R N+     +        +L  G+E+H + +++    + Y   A+I+ 
Sbjct: 126 MDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINM 185

Query: 219 YAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           Y + G +  A++V+++     R++  W A++  Y  +G   +A+ L  EM  +G+     
Sbjct: 186 YIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRA 245

Query: 277 TFTAVLSACAHSGLVDKAWDI-FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           T   +LS+C     ++   +I   AM  +     +V +  C++ + ++   I EA E   
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHEAREVFD 303

Query: 336 KMPVKPSAKVWGALLYGASISGDVELG 362
           KM  K S   W  ++ G +  G  E+ 
Sbjct: 304 KMETK-SVVSWTIIIGGYADCGHSEIA 329


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 263/469 (56%), Gaps = 8/469 (1%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + D   WN MI G S     +    L+  ML       +  T   +L+AC   S      
Sbjct: 72  RPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPH-NAYTFPFLLKACSNLSAFQETT 130

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  + +     D++  N+LI  YA  G+  +A  L D + + D VS++++I GY+  G
Sbjct: 131 QIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAG 190

Query: 123 FVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
            ++ A+ LF+ M ++    +W  +ISG VQ   ++  L L  EMQ S V P+ V+++S  
Sbjct: 191 EMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASAL 250

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  S    L+ GK IH YA K R   +  +   +ID YAK G +  A  VF   K +S+ 
Sbjct: 251 SACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQ 310

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +WTA+IS YA HG   +A+S F EM N G++P+ +TFTAVL+AC+++GLV++   +FN +
Sbjct: 311 VWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTI 370

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              Y ++P++EHY CMV +L RA  ++EA  F+ KMP+KP+A +WG+LL    I  ++EL
Sbjct: 371 ERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIEL 430

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ + + L E++  + G Y+ MAN+++   +WD+A   R  M+E G+ K+PG S I   G
Sbjct: 431 GEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEG 490

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEE 464
               F+A D S  + ++I      +   + E GYV      LLD V++E
Sbjct: 491 TTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDE 539



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 141/345 (40%), Gaps = 75/345 (21%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
            F    RP    WN +I GL  +++ +  L L   M       NA T   +    S+ S 
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK------------- 236
            +   +IH +  K  Y  +IY   ++I++YA TG    A  +FDR +             
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185

Query: 237 -------------------GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
                                + I WT +IS Y   G   +A+ LF+EM N+ + PD V+
Sbjct: 186 YVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVS 245

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC--MVGVLSRARRISEA----- 330
             + LSAC+  G +++   I +  +     +  ++   C  ++ + ++   + EA     
Sbjct: 246 LASALSACSQLGALEQGKWIHSYAN---KTRTRIDSVLCCVLIDMYAKCGEMEEALGVFK 302

Query: 331 -----------------------TEFVSK------MPVKPSAKVWGALLYGASISGDVEL 361
                                   E +SK      M VKP+A  + A+L   S +G VE 
Sbjct: 303 NMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEE 362

Query: 362 GKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           GK V + +   + ++P    +Y  M +L  +AG  +EA+R  ++M
Sbjct: 363 GKSVFNTIERDYNLKP-TIEHYGCMVDLLGRAGLLNEANRFIQKM 406



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +  W ++I+GY+  G   E  + F EM N  V +P+ +T  +VL AC  +  +  
Sbjct: 304 MKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGV-KPNAITFTAVLTACSYTGLVEE 362

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
           G  V N +   + +K  +     ++ +  + G L+ A   + +M  K + V + +++   
Sbjct: 363 GKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKAC 422

Query: 119 MVHGFVE 125
            +H  +E
Sbjct: 423 QIHKNIE 429


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 264/473 (55%), Gaps = 41/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSW S+IAGY+Q     E   L   ML     +P+G T  S+L+A G  +D   
Sbjct: 112 MRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKG-RFKPNGFTFASLLKAVGAYADSGI 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS---------- 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  +    E  L +  EMQ +G      T SSI
Sbjct: 221 ---------------------WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSI 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+R     +V   ++D YAK+G +  A++VF+R   + L
Sbjct: 260 FSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDL 319

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++A+A +G   +AVS F EM  +GI  + ++F  +L+AC+H GLV +    F+ 
Sbjct: 320 VTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFD- 378

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P +EHY  +V +L RA  ++ A  F+ KMP++P+A VWGALL    +  + +
Sbjct: 379 MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAK 438

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+F+++P+++G  +++ N+Y+  G WD A RVR+ MK +G+ K P  SW+E  
Sbjct: 439 VGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIE 498

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEES 465
             +  FVA D +  ++E+IY + + +   +R+EGYV         +DE E E+
Sbjct: 499 NSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREA 551



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 128/263 (48%), Gaps = 31/263 (11%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           + L+S  L P      + + AC QS ++    ++H  +  S    D ++ N+LI +Y KC
Sbjct: 40  DHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKC 99

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+  A  + D+M +KD VS++++I+GY                                
Sbjct: 100 GSVVEAHKVFDKMRNKDMVSWTSLIAGY-------------------------------A 128

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
           QN+     + L+  M     +PN  T +S+      +++   G +IH  AVK  +  ++Y
Sbjct: 129 QNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVY 188

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V +A++D YA+ G +  A  VFD+   ++ + W A+IS +A  GD   A+ +F EM  NG
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNG 248

Query: 271 IQPDPVTFTAVLSACAHSGLVDK 293
            +    T++++ SA A  G +++
Sbjct: 249 FEATHFTYSSIFSALAGIGALEQ 271



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P      +  +  +   NL   ++IH +   +R+  + ++  ++I  Y K G +  A +V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC---AHS 288
           FD+ + + ++ WT++I+ YA +   ++A+ L   ML    +P+  TF ++L A    A S
Sbjct: 109 FDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADS 168

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G+  +     +A++ +      V   + ++ + +R  ++  AT    K+  K +   W A
Sbjct: 169 GIGGQ----IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK-NGVSWNA 223

Query: 349 LLYGASISGDVELGKFV 365
           L+ G +  GD E    V
Sbjct: 224 LISGFARKGDGETALMV 240


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 254/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SW SMI G++Q G   +   +FREM     L+ D  T  SVL ACG    +  
Sbjct: 235 MRERDSISWTSMITGFTQNGLDRDAIDIFREM-KLENLQMDQYTFGSVLTACGGVMALQE 293

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH ++I +  K ++++ +AL+ MY KC ++  A A+  +M+ K+ VS          
Sbjct: 294 GKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVS---------- 343

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A++ G  QN   E  +    +MQ  G+ P+  T+ S+
Sbjct: 344 ---------------------WTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSV 382

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + H  A+ +     I V+ A++  Y K G +  + R+F+    +  
Sbjct: 383 ISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDE 442

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA++S YA  G A++ + LF  ML +G++PD VTF  VLSAC+ +GLV+K   IF +
Sbjct: 443 VTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFES 502

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI P  +HY CM+ + SRA RI EA  F++KMP  P A  W  LL      G+++
Sbjct: 503 MINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMD 562

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + L E++P NT +Y++++++Y+  G+W+E  R+R+ M++ GL K PG SWI+  
Sbjct: 563 IGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYK 622

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F A D S   S+QIY  LE+L   M +EGYV
Sbjct: 623 NQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYV 658



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 214/444 (48%), Gaps = 46/444 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGF-YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M +RD VSWNS+I+GY+  G  Y+  KA    + N      + +T  ++L    +   + 
Sbjct: 101 MPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVK 160

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G ++H  V++      +++ + L+ MY+K G +  AR + DE+ +K+ V Y+ +I G M
Sbjct: 161 LGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLM 220

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G VE +  LF  M+     +W ++I+G  QN      +D+ REM+   ++ +  T  S
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGS 280

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + +       L+ GK++H Y ++  Y  NI+VA+A++D Y K   +  A+ VF +   ++
Sbjct: 281 VLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKN 340

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------ 287
           ++ WTA++  Y  +G + +AV  F++M   GI+PD  T  +V+S+CA+            
Sbjct: 341 VVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHA 400

Query: 288 ----SGLVDKAWDIFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRIS 328
               SGL+     + NA+   YG   S+E                +  +V   ++  + +
Sbjct: 401 RALTSGLISFI-TVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKAN 459

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------N 379
           E       M    +KP    +  +L   S +G VE G    + +FE      G      +
Sbjct: 460 ETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKG----NQIFESMINEHGIVPIQDH 515

Query: 380 YIIMANLYSQAGRWDEADRVREQM 403
           Y  M +L+S+AGR +EA     +M
Sbjct: 516 YTCMIDLFSRAGRIEEARNFINKM 539



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 196/432 (45%), Gaps = 49/432 (11%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L+ C ++ +      +H+ +I++    + ++ N LI  YAK GS+ YA  + D+M   
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREM 165
           +  S++ I+S Y   G V +   LF  M R    +WN++ISG       +++V      +
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 166 QASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           +  G    N +T S++  L S    +K G++IHG+ VK  +   ++V + ++D Y+K G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 225 LHGAQRVFDRFKGRSLII-------------------------------WTAIISAYAAH 253
           +  A++VFD    +++++                               WT++I+ +  +
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
           G    A+ +F EM    +Q D  TF +VL+AC     + +   + +A   +   + ++  
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV-HAYIIRTDYKDNIFV 312

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKFVCDHLFE 371
            + +V +  + + I  A     KM  K +   W A+L G   +G  E  +  F     + 
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYG 371

Query: 372 IEPEN-TGNYII--MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           IEP++ T   +I   ANL S     +E  +   +   SGL      S+I  S  L +   
Sbjct: 372 IEPDDFTLGSVISSCANLAS----LEEGAQFHARALTSGLI-----SFITVSNALVTLYG 422

Query: 429 KDTSGDKSEQIY 440
           K  S + S +++
Sbjct: 423 KCGSIEDSHRLF 434


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 254/456 (55%), Gaps = 34/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNSMI G+ +   Y     +FRE+L+   L PD V++ SVL AC    ++ F
Sbjct: 261 MPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLS---LGPDQVSISSVLSACAGLVELDF 317

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  +++  +   +++ N+L+ MY KCG  + A  L     D+D V           
Sbjct: 318 GKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVV----------- 366

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +I G  +    E      + M   GV P+  + SS+
Sbjct: 367 --------------------TWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSL 406

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  + L  G  IH + +K  + +N  ++++++  Y K G +  A +VF   K  ++
Sbjct: 407 FHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNV 466

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I+ +  HG A++A+ LF EMLN G+ P+ +TF +VLSAC+H+G +D  +  FN+
Sbjct: 467 VCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNS 526

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  + I+P +EHYACMV +L R  R+ EA  F+  MP +P + VWGALL       +VE
Sbjct: 527 MANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVE 586

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V + LF++EP+N GNY++++N+Y + G  +EAD VR  M  +G+ K  G SWI+  
Sbjct: 587 MGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVK 646

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
                F A D S  ++++IY +L++L  L++  GYV
Sbjct: 647 NRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYV 682



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 186/434 (42%), Gaps = 69/434 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V+W ++I   S+     +    F  M  + +  P+  T  ++L AC  ++ +  G ++
Sbjct: 164 NVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIY-PNHFTFSAILPACAHAALLSEGQQI 222

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  + +     D ++  AL+ MYAKCGS+  A  + DEM  ++ VS              
Sbjct: 223 HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVS-------------- 268

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++I G V+N  +   + + RE+ + G  P+ V+ISS+ S  
Sbjct: 269 -----------------WNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC 309

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  GK++HG  VK      +YV  +++D Y K G    A ++F     R ++ W 
Sbjct: 310 AGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWN 369

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD- 292
            +I       +  +A + F  M+  G++PD  +++++  A A           HS ++  
Sbjct: 370 VMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKT 429

Query: 293 ---KAWDIFNAMSGQYG-----------IQPSVEH----YACMVGVLSRARRISEATEFV 334
              K   I +++   YG            + + EH    +  M+ V  +    +EA +  
Sbjct: 430 GHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLF 489

Query: 335 SKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQ 389
            +M    V P    + ++L   S +G ++ G    + +  +     G  +Y  M +L  +
Sbjct: 490 EEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGR 549

Query: 390 AGRWDEADRVREQM 403
            GR +EA R  E M
Sbjct: 550 VGRLEEACRFIESM 563



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 50/291 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++  W  +   Y  G         F +  + P L+        +L    +   +    +
Sbjct: 72  REVAFWLQLFTSYQSG------VPKFHQFSSVPDLK-------HLLNNAAKLKSLKHATQ 118

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+ ++ ++    L   N L+ +YAKCGS+ +                            
Sbjct: 119 IHSQLVTTNNHASLANINTLLLLYAKCGSIHHT--------------------------- 151

Query: 124 VEKAMDLFQVMKRPGLS--TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
               + LF     P  +  TW  +I+ L ++N+    L     M+ +G+ PN  T S+I 
Sbjct: 152 ----LLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAIL 207

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +H + L  G++IH    K+ +  + +VATA++D YAK G +  A+ VFD    R+L+
Sbjct: 208 PACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLV 267

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
            W ++I  +  +    +A+ +F E+L+ G  PD V+ ++VLSACA  GLV+
Sbjct: 268 SWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACA--GLVE 314



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 131 FQVMKRPGLSTWNAVISGLVQNNRHEAV-LDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
            QV K    S  N+   GL   +R  A  L L    Q SGV P     SS+  L    +N
Sbjct: 49  LQVQKENARSKPNSNFEGLGPMSREVAFWLQLFTSYQ-SGV-PKFHQFSSVPDLKHLLNN 106

Query: 190 ------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS--LI 241
                 LK   +IH   V      ++     ++  YAK G +H    +F+ +   S  ++
Sbjct: 107 AAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVV 166

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
            WT +I+  +      +A++ FN M   GI P+  TF+A+L ACAH+ L+ +   I
Sbjct: 167 TWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 258/456 (56%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SW S+IAGY+Q    +E   L   ML     +P+G T  S+L+A G S+    
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGR-FKPNGFTFASLLKAAGASASSGI 183

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 184 GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS---------- 233

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E  L +  EMQ +G      T SS+
Sbjct: 234 ---------------------WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSV 272

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+    + +V   I+D YAK+G +  A++VFDR   + +
Sbjct: 273 FSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDV 332

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++A+A +G   +AV+ F EM   G+  + +TF ++L+AC+H GLV +    F+ 
Sbjct: 333 VTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDM 392

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P ++HY  +V +L RA  +++A  F+ KMP+KP+A VWGALL    +  + +
Sbjct: 393 MK-EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAK 451

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+FE++P++TG  +++ N+Y+  G+WD A RVR+ MK +G+ K P  SW+E  
Sbjct: 452 IGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIE 511

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  +SE+IY   E +   +R+ GYV
Sbjct: 512 NSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 547



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 37/264 (14%)

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           RE+  +P L        S++ AC +   +     +H  +  S     +++ N+LI +Y K
Sbjct: 58  RELAATPRL------YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCK 111

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG++  AR + D M  +D                               + +W ++I+G 
Sbjct: 112 CGAVADARRVFDGMPARD-------------------------------MCSWTSLIAGY 140

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            QN+  +  L L+  M     +PN  T +S+       ++   G++IH   VK  +  ++
Sbjct: 141 AQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDV 200

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           YV +A++D YA+ G +  A  VFD+ + ++ + W A+I+ +A  GD    + +F EM  N
Sbjct: 201 YVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRN 260

Query: 270 GIQPDPVTFTAVLSACAHSGLVDK 293
           G +    T+++V SA A  G +++
Sbjct: 261 GFEATHFTYSSVFSAIAGIGALEQ 284


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 259/465 (55%), Gaps = 6/465 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   +N++  GY +      C  ++  ML+  V  P+  T   +++AC     I  G ++
Sbjct: 84  DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSV-SPNKFTYPPLIRACCIDYAIEEGKQI 142

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++     D +  N LI MY    SL+ AR + D M  +D VS++++I+GY   GFV
Sbjct: 143 HAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFV 202

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +KA ++F++M      +WNA+I+  VQ+NR      L   M+   V  +    +S+ S  
Sbjct: 203 DKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSAC 262

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L+ GK IHGY  K+  + +  +AT +ID Y K G L  A  VF+    + +  W 
Sbjct: 263 TGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWN 322

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I   A HG    A+ LF EM    + PD +TF  VLSACAHSGLV++    F  M+  
Sbjct: 323 CMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEV 382

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            G++P +EH+ CMV +L RA  + EA + +++MPV P A V GAL+    I G+ ELG+ 
Sbjct: 383 LGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQ 442

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           +   + E+EP N+G Y+++ANLY+ AGRW++  +VR+ M + G+ K PG S IE   G+ 
Sbjct: 443 IGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVD 502

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            F+A   +  ++++IY  L+ +L  +R  GYV     +L +++EE
Sbjct: 503 EFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEE 547



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 150/360 (41%), Gaps = 53/360 (14%)

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           +K G L+YA  + D++   D   Y+ I  GY+        + ++  M    +S       
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 148 GLVQNNRHEAVLDLVREMQAS----GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            L++    +  ++  +++ A     G   +  +++++  ++ +F +L+  + +      N
Sbjct: 125 PLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRV----FDN 180

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
              R++   T++I  Y++ GF+  A+ VF+    R+ + W A+I+AY       +A +LF
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240

Query: 264 NEMLNNGIQPDPVTFTAVLSAC-----------------------------------AHS 288
           + M    +  D     ++LSAC                                      
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKC 300

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKV 345
           G ++KA ++FN +      Q  +  + CM+G L+   +   A E   +M    V P    
Sbjct: 301 GCLEKASEVFNELP-----QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQM 403
           +  +L   + SG VE GK    ++ E+     G  ++  M +L  +AG  +EA ++  +M
Sbjct: 356 FVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 415



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 43/196 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALF------------------------------- 29
           M +RD+VSW S+I GYSQ GF ++ + +F                               
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240

Query: 30  -REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
            R  L + VL  D     S+L AC     +  G  +H ++ +S I++D  +   +I MY 
Sbjct: 241 DRMRLENVVL--DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYC 298

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNA 144
           KCG L+ A  + +E+  K   S++ +I G  +HG  E A++LF+ M+R    P   T+  
Sbjct: 299 KCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVN 358

Query: 145 VI-----SGLVQNNRH 155
           V+     SGLV+  +H
Sbjct: 359 VLSACAHSGLVEEGKH 374


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 264/468 (56%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN++I+GY++ G Y+E   LF+EM+ + V +PD  T+V+VL AC QS+ I  G +
Sbjct: 198 KDVVSWNALISGYAETGNYKEALELFKEMMKTNV-KPDESTMVTVLSACAQSASIELGRQ 256

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y KCG ++ A  L + +      SY  +IS       
Sbjct: 257 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGL------SYKDVIS------- 303

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 304 ------------------WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPA 345

Query: 184 FSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID YAK G +  AQ+VFD    RSL 
Sbjct: 346 CAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A+ A  +F+ M  +GI+PD +TF  +LSAC+HSG++D    IF +M
Sbjct: 406 SWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 465

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y I P +EHY CM+ +L  +    EA E ++ M + P   +W +LL    + G+VEL
Sbjct: 466 TEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVEL 525

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+    +L +IEP+N+G+Y++++N+Y+ AGRW+E  + R  + + G+ K+PG S IE   
Sbjct: 526 GESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDS 585

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 586 VVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 202/404 (50%), Gaps = 6/404 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M+ S  L P+  T   +L+AC +S     G ++
Sbjct: 67  NLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLVPNSYTFPFLLKACAKSKAFREGQQI 125

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +DL++  +LI MY K G  + AR + D+ S +D VSY+A+I GY  +G++
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYI 185

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F  +    + +WNA+ISG  +   ++  L+L +EM  + V+P+  T+ ++ S  
Sbjct: 186 XSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSAC 245

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  ++++ G+++H +   + +  N+ +  A+ID Y K G +  A  +F+    + +I W 
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWN 305

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D    I   +  +
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKR 365

Query: 305 Y-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
             G+         ++ + ++   I  A +    M +  S   W A+++G ++ G      
Sbjct: 366 LKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANPAF 424

Query: 364 FVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            +   + +  IEP++   ++ + +  S +G  D    +   M E
Sbjct: 425 DIFSRMRKDGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMTE 467



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 3/178 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN++I GY+    Y+E   LF+EML S    P+ VT++S+L AC     I  
Sbjct: 296 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNEVTMLSILPACAHLGAIDI 354

Query: 61  GMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G  +H ++ +    +     +  +LI MYAKCG ++ A+ + D M ++   S++A+I G+
Sbjct: 355 GRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            +HG    A D+F  M++ G+   +    GL+    H  +LDL R +  S      +T
Sbjct: 415 AMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKIT 472



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F  ++ P L  WN +  G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 56  AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAK 115

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               + G++IHG+ +K   D ++YV T++I  Y K G    A++VFD+   R ++ +TA+
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175

Query: 247 ISAYAAH-------------------------------GDASKAVSLFNEMLNNGIQPDP 275
           I  YA++                               G+  +A+ LF EM+   ++PD 
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDE 235

Query: 276 VTFTAVLSACAHSGLVD 292
            T   VLSACA S  ++
Sbjct: 236 STMVTVLSACAQSASIE 252


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 264/467 (56%), Gaps = 13/467 (2%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           + NS+I GY+      +   LF +++    L PD  T  S+ ++CG   +   G ++H  
Sbjct: 45  TCNSIIRGYTNKNLPRQ-AILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCH 100

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
             +     D +I N L+ MY+ CG L  AR + D+M +K  VS++ +I  Y       +A
Sbjct: 101 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 160

Query: 128 MDLFQVMK-RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           + LF+ M+    L  WN +I+G V+++ +E  L L  EMQ SGV+ + VT++S+    +H
Sbjct: 161 IKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 220

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ GK +H Y  K + + ++ + TA++D YAK G +  A RVF     + ++ WTA+
Sbjct: 221 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTAL 280

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I   A  G   KA+ LF+EM  + ++PD +TF  VL+AC+H+GLV++    FN+M  +YG
Sbjct: 281 IVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG 340

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           IQPS+EHY CMV +L RA RI+EA + +  MP+ P   V   LL    I G++ + +   
Sbjct: 341 IQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAA 400

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
             L E++P+N G Y++++N+YS    W+ A ++RE M E  + K PG S IE  G +  F
Sbjct: 401 QQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEF 460

Query: 427 VAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEES 465
           V  D S  +S +IY  L+ ++  ++  GYV         +DE E+E+
Sbjct: 461 VKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKEN 507



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 36/254 (14%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN MI G+ +   YEE  +LF EM  S V + D VT+ S+L AC     +  G  +
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV-KGDKVTMASLLIACTHLGALELGKWL 230

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H ++ +  I++D+ +  AL+ MYAKCGS++ A  +  EM +KD ++++A+I G  + G  
Sbjct: 231 HVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQG 290

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            KA++LF                                EMQ S V+P+A+T   + +  
Sbjct: 291 LKALELFH-------------------------------EMQMSEVKPDAITFVGVLAAC 319

Query: 185 SHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLI 241
           SH   +  G      ++ N+Y    +I     ++D   + G +  A+ +           
Sbjct: 320 SHAGLVNEGIAYFN-SMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYF 378

Query: 242 IWTAIISAYAAHGD 255
           +   ++SA   HG+
Sbjct: 379 VLVGLLSACRIHGN 392



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 121/300 (40%), Gaps = 70/300 (23%)

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GSL YAR + +++ +    + ++II GY       +A+  +Q+M   GL           
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD---------- 75

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                                P+  T     SLF     L  GK++H ++ K  +  + Y
Sbjct: 76  ---------------------PDRFTFP---SLFKSCGVLCEGKQLHCHSTKLGFASDAY 111

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA------------------ 252
           +   +++ Y+  G L  A++VFD+   +S++ W  +I AYA                   
Sbjct: 112 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 171

Query: 253 --------------HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDI 297
                           D  +A+SLFNEM  +G++ D VT  ++L AC H G ++   W  
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKW-- 229

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +    +  I+  V     +V + ++   I  A     +MP K     W AL+ G ++ G
Sbjct: 230 LHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK-DVMTWTALIVGLAMCG 288



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+++W ++I G +  G   +   LF EM  S V +PD +T V VL AC  +  +  
Sbjct: 269 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEV-KPDAITFVGVLAACSHAGLVNE 327

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G+   N +   + I+  +     ++ M  + G +  A  L+  M    D      ++S  
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387

Query: 119 MVHG 122
            +HG
Sbjct: 388 RIHG 391


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 254/451 (56%), Gaps = 8/451 (1%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M +R+IVSWNS+I  Y Q G   E   LF  M+ +  + PD VT+ SV+ AC   +    
Sbjct: 953  MPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFV-PDEVTLASVMSACAGLAADRE 1011

Query: 61   GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G +VH  V++S   + D+ + NAL+ MYAKCG    AR + D M+ +  VS +++I+GY 
Sbjct: 1012 GRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYA 1071

Query: 120  VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                VE A  +F  M    +  WN +I+   QN   E  L L   ++   V P   T  +
Sbjct: 1072 RSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGN 1131

Query: 180  IFSLFSHFSNLKGGKEIHGYAVKN--RYD----RNIYVATAIIDTYAKTGFLHGAQRVFD 233
            + +   + ++L+ G++ H + +K   R+D     +++V  +++D Y KTG +    +VF+
Sbjct: 1132 VLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFE 1191

Query: 234  RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            R   R  + W A+I  +A +G A  A+ LF  ML +   PD VT   VLSAC HSGLV++
Sbjct: 1192 RMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEE 1251

Query: 294  AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
                F +M+  +GI PS +HY CM+ +L RA  + E  E + +M ++P A +W +LL   
Sbjct: 1252 GRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSC 1311

Query: 354  SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
             +  +VE+G++    LFE++P N+G Y++++N+Y++ G+W +  RVR  MK  G++K PG
Sbjct: 1312 RLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPG 1371

Query: 414  RSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444
             SWIE    +  F+A+D       +I+ IL 
Sbjct: 1372 CSWIEIGRKVSVFLARDNGHPCKNEIHAILR 1402



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 197/427 (46%), Gaps = 37/427 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWN+M+ GY +         LF++M        D +T+ SVL AC    DI  
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQM-RQETREFDAITLGSVLSACTGILDIGK 402

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALLDEM-SDKDEVSYSAIISGY 118
           G EVH F I+        + NAL+ MY+KCG L  A R LL EM S++D  SYS      
Sbjct: 403 GEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERD--SYS------ 454

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  WN++ISG  +++  EA L  + +MQ S V PN  T S
Sbjct: 455 -----------------------WNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFS 490

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S  +  ++   LK G +IH Y ++  Y+ +  + + +ID Y K      + R+F+    R
Sbjct: 491 SALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSR 550

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +I+W ++I   A  G     + LF+EM   GI+ D VTF   L +C   G V      F
Sbjct: 551 DVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYF 610

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M  +  I P +EHY CM+ +L +   + E  +FV  MP +P+  +W  +       G+
Sbjct: 611 TLMMDE-SIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGN 669

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +LG+     + +  P     ++   +  S  G   EA+      +  G  ++P     E
Sbjct: 670 RKLGERAAKCINDSNPLTPVQFVATVDYESNDG-GREAESTSFSSEGEGCEELPFSLEGE 728

Query: 419 CSGGLQS 425
            SG L +
Sbjct: 729 ASGSLPA 735



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 188/368 (51%), Gaps = 8/368 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           + +SWN ++  Y   G  +    +F  ML++ V RP G TV   + AC  ++ +  G  +
Sbjct: 216 NAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGV-RPLGYTVSHAVLACRDNNALEEGRCI 274

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H FV+    +  + + ++++ MYAKCG++D A++L +    KD V  ++I+SG    G +
Sbjct: 275 HAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRI 334

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F+ MK   L +WNA+++G +++      L L ++M+      +A+T+ S+ S  
Sbjct: 335 ADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSAC 394

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR--VFDRFKGRSLII 242
           +   ++  G+E+H +A+K  +  +  +  A++  Y+K G L  A+R  +F+    R    
Sbjct: 395 TGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYS 454

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++IS Y  H  +  A+    +M  + + P+  TF++ L+ACA+  L+ +   I   M 
Sbjct: 455 WNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMI 513

Query: 303 GQ-YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            + Y I   +   + ++ +  + R+   +       P +    +W ++++G + SG  E 
Sbjct: 514 RKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCAYSGKGEY 570

Query: 362 GKFVCDHL 369
           G  + D +
Sbjct: 571 GLDLFDEM 578



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 164/337 (48%), Gaps = 4/337 (1%)

Query: 69   IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            ++S    + ++ N L+  YA+ G L  AR + DE+   +  SY+A++S +   G    A 
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 129  DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
             LF  +  P   ++NAVI+ L Q++R    L  +  M A     NA + +S  S  +   
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 189  NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            + + G ++H    K+ + +++Y+ +A++D YAK  +   A+RVF+    R+++ W ++I+
Sbjct: 907  DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966

Query: 249  AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
             Y  +G   +A+ LF  M+  G  PD VT  +V+SACA      +   +   +      +
Sbjct: 967  CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026

Query: 309  PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
              +     +V + ++  R   A     +M  + S     +L+ G + S +VE  + V   
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAARCVFDRMASR-SVVSETSLITGYARSANVEDAQMVFSQ 1085

Query: 369  LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            + E   +N   + ++   Y+Q G  +EA R+  ++K 
Sbjct: 1086 MVE---KNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 65/323 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD  SWN++I   S+ G   E  +LF  M NS  +RP   T+ SVL  C +  D+  
Sbjct: 111 MPLRDGGSWNAIITASSRAGHPSEALSLFSNM-NSLGIRPKDATMASVLSCCAECLDLCG 169

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H  + +   + ++ +  AL+ +Y  C  L  AR   D++ + + +S++ I+  Y +
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHL 229

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  + A+D+F                                 M ++GVRP   T+S  
Sbjct: 230 AGMGDMAVDMF-------------------------------FRMLSAGVRPLGYTVSHA 258

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ----------- 229
                  + L+ G+ IH + +++ Y+ +++V ++++D YAK G +  AQ           
Sbjct: 259 VLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDM 318

Query: 230 --------------------RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
                               RVF+  K R+L+ W A+++ Y    D + A+ LF +M   
Sbjct: 319 VMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQE 378

Query: 270 GIQPDPVTFTAVLSACAHSGLVD 292
             + D +T  +VLSAC  +G++D
Sbjct: 379 TREFDAITLGSVLSAC--TGILD 399



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 187/409 (45%), Gaps = 81/409 (19%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
            D  S+N++IA  +Q     +   LF   +++     +  +  S L AC    D   G++V
Sbjct: 856  DQCSYNAVIAALAQHSRGAD-ALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQV 914

Query: 65   HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            H  V +S    D++I +AL+ MYAKC   + AR + + M +++ VS++++I+ Y  +G V
Sbjct: 915  HALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPV 974

Query: 125  EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             +A+ LF  M + G                                 P+ VT++S+ S  
Sbjct: 975  GEALVLFVSMMKAGFV-------------------------------PDEVTLASVMSAC 1003

Query: 185  SHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  +  + G+++H   VK +R+  ++ ++ A++D YAK G    A+ VFDR   RS++  
Sbjct: 1004 AGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSE 1063

Query: 244  TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            T++I+ YA   +   A  +F++M+   +    + +  +++A A +G  ++A  +F     
Sbjct: 1064 TSLITGYARSANVEDAQMVFSQMVEKNV----IAWNVLIAAYAQNGEEEEALRLF----- 1114

Query: 304  QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
                               R +R S          V P+   +G +L       D++LG+
Sbjct: 1115 ------------------VRLKRES----------VWPTHYTYGNVLNACGNVADLQLGQ 1146

Query: 364  FVCDHL------FEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQM 403
                H+      F+  PE+    GN ++  ++Y + G  D+  +V E+M
Sbjct: 1147 QAHVHVLKEGFRFDFGPESDVFVGNSLV--DMYLKTGSIDDGAKVFERM 1193



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 1/219 (0%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V  A +LF +M      +WNA+I+   +       L L   M + G+RP   T++S+ 
Sbjct: 99  GSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVL 158

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +   +L G +++HG+  K  +  N+ + TA++D Y     L  A+R FD     + I
Sbjct: 159 SCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAI 218

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  I+  Y   G    AV +F  ML+ G++P   T +  + AC  +  +++   I +A 
Sbjct: 219 SWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCI-HAF 277

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
             ++G +  V   + +V + ++   +  A    +  P+K
Sbjct: 278 VLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L     NL   +  H  A+K+ +    ++   ++  YA+ G L  A+RVFD     +   
Sbjct: 769 LLRSAPNLPAARAAHARALKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFS 828

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           + A++SA+A  G  + A +LF+ + +    PD  ++ AV++A A 
Sbjct: 829 YNALLSAHARLGRPADARALFHAIPD----PDQCSYNAVIAALAQ 869


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 264/466 (56%), Gaps = 8/466 (1%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M + Y + G  +E   +   M++S + RPD ++++S + +C Q  +I++G   H +V+
Sbjct: 305 NAMASNYVRQGLTKEALGVLNLMMDSGI-RPDRISMLSAISSCSQLRNILWGKSCHGYVL 363

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
            +  +    ICNALI MY KC   D A  + D MS+K  V++++I++GY+ +G V+ A +
Sbjct: 364 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWE 423

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFS 188
            F  M    + +WN +IS LVQ N +E  +++   MQ+   V  + VT+ SI S   H  
Sbjct: 424 TFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLG 483

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L   K I+ Y  KNR   ++ + T ++D +++ G    A  +F+    R +  WTA I 
Sbjct: 484 ALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 543

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
           A A  G+  +A+ LFNEM+  G++PD V F   L+AC H GLV +  +IFN+M   +G+ 
Sbjct: 544 AMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVS 603

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P   HY CMV +L RA  + EA + +  MP +P+  +W +LL    + G+VE+  F  + 
Sbjct: 604 PEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEK 663

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           +  + PE TG+Y++++N+Y+ AGRW++  +VR  MKE GL K PG S I+  G    F +
Sbjct: 664 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTS 723

Query: 429 KDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEESAYV 468
            D S  +  +I  +L+ L      LG + +   VL+D  E+E  ++
Sbjct: 724 GDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFM 769



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 35/304 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSW SMI GY++  F ++   LF  M+    + P+ VT+V V+ AC +  D+  
Sbjct: 194 MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET 253

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V++F+ +S I+++  + +AL+ MY KC ++D A+ L DE    +    +A+ S Y+ 
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  ++A+                             VL+L   M  SG+RP+ +++ S 
Sbjct: 314 QGLTKEAL----------------------------GVLNL---MMDSGIRPDRISMLSA 342

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S   N+  GK  HGY ++N ++    +  A+ID Y K      A R+FDR   +++
Sbjct: 343 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 402

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +I++ Y  +G+   A   FN M    I    V++  ++SA     + ++A ++F+ 
Sbjct: 403 VTWNSIVAGYIENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYEEAIEVFHY 458

Query: 301 MSGQ 304
           M  Q
Sbjct: 459 MQSQ 462



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 146/279 (52%), Gaps = 31/279 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I GY+  G  +E   LF  M+NS +  PD  T    L  C +S D   G+++H  +
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGI-SPDKYTFPFGLSVCAKSRDKGNGIQIHGLI 159

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+     DL++ N+L+  YA+CG LD AR + DEMS+++ VS++++I GY    F + A+
Sbjct: 160 IKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAV 219

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           DLF                               R ++   V PN+VT+  + S  +   
Sbjct: 220 DLF------------------------------FRMVRDEDVIPNSVTMVCVISACAKLE 249

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G++++ +   +  + N  + +A++D Y K   +  A+R+FD +   +L +  A+ S
Sbjct: 250 DLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMAS 309

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            Y   G   +A+ + N M+++GI+PD ++  + +S+C+ 
Sbjct: 310 NYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQ 348



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 31/163 (19%)

Query: 188 SNLKGGKEI------HGYAVKNRYDRNIYVATAIIDTYAKTGF---LHGAQRVFDRFKGR 238
           S+LK  K I      H    K   D ++   T ++    + G    L  A+ VF+  +  
Sbjct: 36  SSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESY 95

Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS--------- 288
            +  ++ ++I  YA+ G   +A+ LF  M+N+GI PD  TF   LS CA S         
Sbjct: 96  GTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQI 155

Query: 289 -GLV---DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            GL+   D A D+F        +Q S+ H+    G L  AR++
Sbjct: 156 HGLIIKMDYAKDLF--------VQNSLVHFYAECGELDCARKV 190


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 269/507 (53%), Gaps = 41/507 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VS+N+ IAG+S     +E   LF+ M       P   T+VS+L A  Q SD+ +
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRM-QREGFEPTEYTIVSILNASAQLSDLRY 173

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +I  +   +++I NAL  MYAKCG ++ AR L D ++ K+ VS++ +ISGY  
Sbjct: 174 GKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK 233

Query: 121 HGFVEKAMDLFQVMKRPG-------LST----------------------------WNAV 145
           +G  EK + L   M+  G       +ST                            W A+
Sbjct: 234 NGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAM 293

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           + G  +N R E  L L  EM    + P++ T+SS+ S  +  ++L  G+ +HG ++    
Sbjct: 294 MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGL 353

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           + N+ V++A+ID Y+K GF+  A+ VF+    R+++ W A+I   A +G    A+ LF  
Sbjct: 354 NNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFEN 413

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           ML    +PD VTF  +LSAC H   +++  + F++++ Q+G+ P+++HYACMV +L R  
Sbjct: 414 MLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTG 473

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           RI +A   +  M   P   +W  LL   S  GD+   +    HLFE++P     YI+++N
Sbjct: 474 RIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSN 533

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           +Y+  GRW +   VR  MK   + K  G SWIE    +  F ++D +  +SE IY  L  
Sbjct: 534 MYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNM 593

Query: 446 LLGLMREEGY-----VLLDEVEEESAY 467
           L+G ++EEG+     ++L +V E+  +
Sbjct: 594 LIGKLQEEGFTPNTNLVLHDVGEDEKF 620



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 2/232 (0%)

Query: 69  IESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           +E H+    D ++ N L+ +YAK G L  A+ L D+M  +D  S++A++S Y   G ++ 
Sbjct: 48  MEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQN 107

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
               F  M      ++N  I+G   N+  +  L+L + MQ  G  P   TI SI +  + 
Sbjct: 108 LKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQ 167

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            S+L+ GK+IHG  +   +  N+++  A+ D YAK G +  A+ +FD    ++L+ W  +
Sbjct: 168 LSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           IS YA +G   K + L ++M  +G  PD VT + +++A    G VD+A  +F
Sbjct: 228 ISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 245/403 (60%), Gaps = 1/403 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN+ +  +++G    +  +LF  +    +  PD  T   VL+AC +  D+  G  V
Sbjct: 77  EVTHWNTCLRSFAEGDSPADAISLFYRLREFDI-SPDHYTCSFVLKACSRLLDVRNGKIV 135

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H +V +  ++ ++++ N ++ +YA CG +  AR + D+M  +D ++++ +I+  +  G  
Sbjct: 136 HGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDA 195

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  LF  M    + +W ++I G  Q  + +  +DL  EM+ +G+ PN VT+ ++    
Sbjct: 196 EGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVAC 255

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   NL  G+ IH ++ ++ Y++NI V   +ID Y K G L  A R+FD  + R+++ W+
Sbjct: 256 ADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWS 315

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+  AAHG A  A++LFN+M+N G++P+ VTF  +L AC+H G+V+K    F +M+  
Sbjct: 316 AMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD 375

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI P +EHY CMV + SRA  + EA EF+  MP+ P+  VWGALL G  +  +V+L + 
Sbjct: 376 YGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEE 435

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
              HL +++P N G Y++++N+Y++AGRW++  RVR+ M++ G
Sbjct: 436 ATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 48/291 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SW SMI GY+Q G  +E   LF EM ++ +L P+ VTVV+VL AC    ++V 
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PNEVTVVAVLVACADMGNLVL 263

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+F   S  + ++ +CN LI MY KCG L+ A  + D M ++  VS+SA+I+G   
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+ LF                                +M  +GV+PNAVT   I
Sbjct: 324 HGRAEDALALFN-------------------------------KMINTGVKPNAVTFIGI 352

Query: 181 FSLFSHFSNLKGGKE-----IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR-VFDR 234
               SH   ++ G++        Y +  R +        ++D +++ G L  A   + + 
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEH----YGCMVDLFSRAGLLQEAHEFIMNM 408

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT--FTAVLS 283
               + ++W A++     H    K V L  E   +  + DP+   +  VLS
Sbjct: 409 PIAPNGVVWGALLGGCKVH----KNVKLAEEATRHLSKLDPLNDGYYVVLS 455



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 136/339 (40%), Gaps = 78/339 (23%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +FQ++    ++ WN  +    + +     + L   ++   + P+  T S +    S   +
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII------- 242
           ++ GK +HGY  K     N+++   I+  YA  G +  A++VFD+   R +I        
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 243 ------------------------WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
                                   WT++I  YA  G + +A+ LF EM + G+ P+ VT 
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 279 TAVLSACA-----------------------------------HSGLVDKAWDIFNAMSG 303
            AVL ACA                                     G ++ A  IF+ M  
Sbjct: 249 VAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME- 307

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVE 360
               + +V  ++ M+  L+   R  +A    +KM    VKP+A  +  +L+  S  G VE
Sbjct: 308 ----ERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363

Query: 361 LGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEA 396
            G+     +   + I P    +Y  M +L+S+AG   EA
Sbjct: 364 KGRKYFASMTRDYGIVPR-IEHYGCMVDLFSRAGLLQEA 401



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L  +F++    K++H + +K     +    + +    A       A+ +F       +  
Sbjct: 21  LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTH 80

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAM 301
           W   + ++A     + A+SLF  +    I PD  T + VL AC  S L+D +   I +  
Sbjct: 81  WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC--SRLLDVRNGKIVHGY 138

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             + G+Q ++     +V + +    I  A +   KMP +     W  ++      GD E 
Sbjct: 139 VEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQR-DVITWNIMIARLVKMGDAE- 196

Query: 362 GKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G +    LF   PE N  ++  M   Y+Q G+  EA  +  +M+++GL
Sbjct: 197 GAY---KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL 241


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 168/471 (35%), Positives = 258/471 (54%), Gaps = 39/471 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----SDI 58
           KR I  WN++    +  G  EE   L+ +M N   +  D  T   VL+AC  S    + +
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTVNHL 198

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           + G E+H  +        ++I   L+ MYA+ G +DYA  +   M  ++ VS+SA+I+ Y
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G   +A+  F+                           +++RE + S   PN+VT+ 
Sbjct: 259 AKNGKAFEALRTFR---------------------------EMMRETKDSS--PNSVTMV 289

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +  + L+ GK IHGY ++   D  + V +A++  Y + G L   QRVFDR   R
Sbjct: 290 SVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDR 349

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W ++IS+Y  HG   KA+ +F EML NG  P PVTF +VL AC+H GLV++   +F
Sbjct: 350 DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLF 409

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   +GI+P +EHYACMV +L RA R+ EA + V  M  +P  KVWG+LL    I G+
Sbjct: 410 ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGN 469

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL +     LF +EP+N GNY+++A++Y++A  WDE  RV++ ++  GL K+PGR W+E
Sbjct: 470 VELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWME 529

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + SFV+ D      EQI+  L +L   M+E+GY+     +L E+E E
Sbjct: 530 VRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 177/416 (42%), Gaps = 74/416 (17%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P   T   ++  CG  S +   + VH  ++++    D ++   LIGMY+  GS+DYAR +
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRH 155
            D+   +    ++A+     + G  E+ + L+  M R G+     T+  V+   V +   
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE-- 192

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
                                           ++L  GKEIH +  +  Y  ++Y+ T +
Sbjct: 193 -----------------------------CTVNHLMKGKEIHAHLTRRGYSSHVYIMTTL 223

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQP 273
           +D YA+ G +  A  VF     R+++ W+A+I+ YA +G A +A+  F EM+       P
Sbjct: 224 VDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSP 283

Query: 274 DPVTFTAVLSACA-----------HSGLVDKAWD----IFNAMSGQYGIQPSVE------ 312
           + VT  +VL ACA           H  ++ +  D    + +A+   YG    +E      
Sbjct: 284 NSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343

Query: 313 ---HYACMV---------GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
              H   +V         GV    ++  +  E +      P+   + ++L   S  G VE
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403

Query: 361 LGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            GK + + ++    I+P+   +Y  M +L  +A R DEA ++ + M+     K+ G
Sbjct: 404 EGKRLFETMWRDHGIKPQ-IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 34/262 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN-SPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R++VSW++MIA Y++ G   E    FREM+  +    P+ VT+VSVLQAC   + + 
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H +++   +   L + +AL+ MY +CG L+  + + D M D+D VS++++IS Y 
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           VHG+ +KA+ +F+                               EM A+G  P  VT  S
Sbjct: 363 VHGYGKKAIQIFE-------------------------------EMLANGASPTPVTFVS 391

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFKG 237
           +    SH   ++ GK +     ++      I     ++D   +   L   A+ V D    
Sbjct: 392 VLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451

Query: 238 RSLIIWTAIISAYAAHGDASKA 259
               +W +++ +   HG+   A
Sbjct: 452 PGPKVWGSLLGSCRIHGNVELA 473



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%)

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
           L+Q+   E  L     + +    P+  T   +     H S+L     +H + + N  D++
Sbjct: 52  LIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQD 111

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
            ++AT +I  Y+  G +  A++VFD+ + R++ +W A+  A    G   + + L+ +M  
Sbjct: 112 PFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNR 171

Query: 269 NGIQPDPVTFTAVLSACAHS 288
            G++ D  T+T VL AC  S
Sbjct: 172 IGVESDRFTYTYVLKACVAS 191


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 251/469 (53%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + KRD+VSW SMIAGY Q  F EE  A F+EM +  V  PD + + S   AC     +  
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVW-PDNIGLASAASACAGIKAMRQ 465

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  V  S    D+ I N L+ +YA+CG  + A +L  E+  KDE+           
Sbjct: 466 GLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEI----------- 514

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG  Q+  ++  L +  +M  +G + N  T  S 
Sbjct: 515 --------------------TWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISA 554

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ +++K GK++HG AVK  +     VA A+I  Y K G +  A+ +F     R+ 
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE 614

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II++ + HG   +A+ LF++M   G++P+ VTF  VL+AC+H GLV++    F +
Sbjct: 615 VSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKS 674

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG+ P  +HYAC+V +L RA ++  A  FV +MP+  +A +W  LL    +  ++E
Sbjct: 675 MSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIE 734

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+    HL E+EP ++ +Y++++N Y+  G+W   D+VR+ MK+ G+ K PGRSWIE  
Sbjct: 735 IGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVK 794

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F   D     S+QIY  L  L   + + GY      L  E E+E
Sbjct: 795 NAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQE 843



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 34/348 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D V++N++I+G++Q G  E    +F EM  S  LRPD VTV S+L AC    D+  G ++
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSG-LRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H++++++ +  D     +L+ +Y KCG                                +
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGD-------------------------------I 296

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A D+F +  R  +  WN ++    Q +      ++  +MQA+G+ PN  T   I    
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    ++ G++IH  ++KN ++ ++YV+  +ID Y+K G L  A+++ +  + R ++ WT
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT 416

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I+ Y  H    +A++ F EM + G+ PD +   +  SACA    + +   I +A    
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI-HARVYV 475

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            G    +  +  +V + +R  R  EA     ++  K     W  L+ G
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEI-TWNGLISG 522



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 160/338 (47%), Gaps = 39/338 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD VSW +M++GY+Q G  +E   L+ +M  + V+ P    + SVL AC +      
Sbjct: 104 LSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACTKGKLFAQ 162

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +     + ++ NALI +Y   GS   A  +  +M   D V+++ +ISG+  
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E A+ +F                                EMQ SG+RP+ VT++S+
Sbjct: 223 CGHGECALQIFD-------------------------------EMQLSGLRPDCVTVASL 251

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L+ GK++H Y +K     +     +++D Y K G +  A  +F+     ++
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ AY    D +K+  +F +M   GI P+  T+  +L  C  +G ++    I ++
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQI-HS 370

Query: 301 MSGQYGIQPSVEHYACMV------GVLSRARRISEATE 332
           +S + G +  +     ++      G L +AR+I E  E
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE 408



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 186/444 (41%), Gaps = 67/444 (15%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + ++V WN M+  Y Q     +   +F +M  +  + P+  T   +L+ C  +  I  G 
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQM-QATGIHPNQFTYPCILRTCTCTGQIELGE 366

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H+  I++  + D+++   LI MY+K G LD AR                         
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKAR------------------------- 401

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                  + +++++  + +W ++I+G VQ++  E  L   +EMQ  GV P+ + ++S  S
Sbjct: 402 ------KILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    ++ G +IH     + Y  +I +   +++ YA+ G    A  +F   + +  I 
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT 515

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-------- 294
           W  +IS +       +A+ +F +M   G + +  TF + +SA A+   + +         
Sbjct: 516 WNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 295 -------WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------EATE 332
                   ++ NA+   YG   S+E    +   +S    +S               EA +
Sbjct: 576 KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALD 635

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLY 387
              +M    +KP+   +  +L   S  G VE G      +  +   N    +Y  + ++ 
Sbjct: 636 LFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDIL 695

Query: 388 SQAGRWDEADRVREQMKESGLAKI 411
            +AG+ D A R  ++M  +  A I
Sbjct: 696 GRAGQLDRARRFVDEMPITANAMI 719



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 171/403 (42%), Gaps = 80/403 (19%)

Query: 45  VVSVLQAC-GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           +   LQAC G+ +     +E+H   +   +  D  I N LI +YAK G +  AR +  E+
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           S +D VS+ A++SGY   G  ++A  L+  M       W AVI                 
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMH------WTAVI----------------- 141

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
                   P    +SS+ S  +       G+ IH    K  +    +V  A+I  Y   G
Sbjct: 142 --------PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG 193

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               A+RVF        + +  +IS +A  G    A+ +F+EM  +G++PD VT  ++L+
Sbjct: 194 SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLA 253

Query: 284 ACA-----------HS------------------------GLVDKAWDIFNAMSGQYGIQ 308
           ACA           HS                        G ++ A DIFN      G +
Sbjct: 254 ACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN-----LGDR 308

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFV 365
            +V  +  M+    +   ++++ E   +M    + P+   +  +L   + +G +ELG+ +
Sbjct: 309 TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQI 368

Query: 366 CDHLFEIEPE-NTGNYI--IMANLYSQAGRWDEADRVREQMKE 405
             H   I+    +  Y+  ++ ++YS+ G  D+A ++ E +++
Sbjct: 369 --HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEK 409


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 249/465 (53%), Gaps = 37/465 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I +WN+MI GY++         L+R+M  S  + PD  T   +L+A  +  D+  G +V
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVS-CIEPDTHTYPFLLKAIAKLMDVREGEKV 162

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+  I +  +  +++ N L+ MYA CG                                 
Sbjct: 163 HSIAIRNGFESLVFVQNTLVHMYAACGH-------------------------------A 191

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  LF++M    L TWN+VI+G   N R    L L REM   GV P+  T+ S+ S  
Sbjct: 192 ESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 251

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G+  H Y VK   D N++   A++D YAK G +  A +VFD  + +S++ WT
Sbjct: 252 AELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWT 311

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I   A +G   +A+ LF E+   G+ P  +TF  VL AC+H G+VD+ +D F  M  +
Sbjct: 312 SLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEE 371

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI P +EHY CMV +L RA  + +A EF+  MP++P+A VW  LL   +I G + LG+ 
Sbjct: 372 YGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEV 431

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               L ++EP+++G+Y++++NLY+   RW +  +VR  M   G+ K PG S +E    L 
Sbjct: 432 ARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLH 491

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            FV  D S  ++E+IY+ L  +  L++ EGYV     +L ++EEE
Sbjct: 492 EFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEE 536



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 139/283 (49%), Gaps = 9/283 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F  ++ P + TWN +I G  ++      L+L R+M  S + P+  T   +    + 
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             +++ G+++H  A++N ++  ++V   ++  YA  G    A ++F+    R+L+ W ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ YA +G  ++A++LF EM   G++PD  T  ++LSACA  G +         M  + G
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV-KVG 271

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           +  ++     ++ + ++   I +A +   +M  K S   W +L+ G +++G    GK   
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK-SVVSWTSLIVGLAVNG---FGKEAL 327

Query: 367 DHLFEIEPEN--TGNYIIMANLY--SQAGRWDEADRVREQMKE 405
           +   E+E +         +  LY  S  G  DE     ++MKE
Sbjct: 328 ELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE 370



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++R++V+WNS+I GY+  G   E   LFREM    V  PDG T+VS+L AC +   +  
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGV-EPDGFTMVSLLSACAELGALAL 259

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H ++++  +  +L   NAL+ +YAKCGS+  A  + DEM +K  VS++++I G  V
Sbjct: 260 GRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAV 319

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           +GF ++A++LF+ ++R GL        G++    H  ++D
Sbjct: 320 NGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVD 359


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 247/444 (55%), Gaps = 1/444 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+ SWN MI+GY++   YEE   L  EM  + ++ P  VT++ VL AC +  D     
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDKDLCK 256

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH +V E   +  L + NAL+  YA CG +D A  +   M  +D +S+++I+ GY+  G
Sbjct: 257 RVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERG 316

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A   F  M      +W  +I G ++       L++ REMQ++G+ P+  T+ S+ +
Sbjct: 317 NLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLT 376

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H  +L+ G+ I  Y  KN+   ++ V  A+ID Y K G    AQ+VF     R    
Sbjct: 377 ACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT 436

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA++   A +G   +A+ +F +M +  IQPD +T+  VLSAC HSG+VD+A   F  M 
Sbjct: 437 WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMR 496

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             + I+PS+ HY CMV +L RA  + EA E + KMP+ P++ VWGALL  + +  D  + 
Sbjct: 497 SDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMA 556

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     + E+EP+N   Y ++ N+Y+   RW +   VR ++ +  + K PG S IE +G 
Sbjct: 557 ELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616

Query: 423 LQSFVAKDTSGDKSEQIYLILERL 446
              FVA D S  +SE+IY+ LE L
Sbjct: 617 AHEFVAGDKSHLQSEEIYMKLEEL 640



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 64/317 (20%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IVFGME 63
           D+V WN+MI G+S+     E   L+  ML   V  PD  T   +L    +    +  G +
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGV-TPDSHTFPFLLNGLKRDGGALACGKK 156

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  V++  +  +L++ NAL+ MY+ CG +D AR + D    +D  S             
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS------------- 203

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +ISG  +   +E  ++L+ EM+ + V P +VT+  + S 
Sbjct: 204 ------------------WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +    K +H Y  + + + ++ +  A+++ YA  G +  A R+F   K R +I W
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305

Query: 244 TAIISAYAAHGDA-------------------------------SKAVSLFNEMLNNGIQ 272
           T+I+  Y   G+                                ++++ +F EM + G+ 
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365

Query: 273 PDPVTFTAVLSACAHSG 289
           PD  T  +VL+ACAH G
Sbjct: 366 PDEFTMVSVLTACAHLG 382



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 42/287 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD +SW  MI GY + G + E   +FREM ++ ++ PD  T+VSVL AC     +  
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEI 386

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++ ++ IK D+ + NALI MY KCG  + A+ +  +M  +D+ +++A+      
Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAM------ 440

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                    + GL  N + +  + +  +MQ   ++P+ +T   +
Sbjct: 441 -------------------------VVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGV 475

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236
            S  +H   +   ++   +  K R D  I  +      ++D   + G +  A  +  +  
Sbjct: 476 LSACNHSGMVDQARK---FFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532

Query: 237 -GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
              + I+W A++ A   H D   A     ++L   ++PD     A+L
Sbjct: 533 MNPNSIVWGALLGASRLHNDEPMAELAAKKILE--LEPDNGAVYALL 577



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V  A  LF  +  P +  WN +I G  + +     + L   M   GV P++ T   + 
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 182 S-LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           + L      L  GK++H + VK     N+YV  A++  Y+  G +  A+ VFDR     +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  +IS Y    +  +++ L  EM  N + P  VT   VLSAC+     D    +   
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +S +   +PS+     +V   +    +  A      M  +     W +++ G    G+++
Sbjct: 262 VS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS-WTSIVKGYVERGNLK 319

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           L +   D   ++   +  ++ IM + Y +AG ++E+  +  +M+ +G+
Sbjct: 320 LARTYFD---QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 256/456 (56%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSW S+IAGY+Q     E   L   ML     +P+G T  S+L+A G  +D   
Sbjct: 112 MRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGR-FKPNGFTFASLLKAAGAYADSGT 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 171 GRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS---------- 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  +    E+ L    EM  +G      T SS+
Sbjct: 221 ---------------------WNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSV 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+R     +V   ++D YAK+G +  A++VFDR   + L
Sbjct: 260 FSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDL 319

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++A+A +G   +AVS F EM  +G+  + +TF  +L+AC+H GLV +    F  
Sbjct: 320 VTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEM 379

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P ++HY  +V +L RA  ++ A  F+ KMP++P+A VWGALL    +  + +
Sbjct: 380 MK-EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAK 438

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+FE++P+++G  +++ N+Y+  G+WD A RVR  MK +G+ K P  SW+E  
Sbjct: 439 VGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEME 498

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  ++E+IY +   +   +R+EGYV
Sbjct: 499 NSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYV 534



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 174/383 (45%), Gaps = 42/383 (10%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           ++L++  L P      S + AC QS ++    ++H  +  S    D ++ N+LI MY KC
Sbjct: 40  DLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC 99

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
            S+  AR + D+M  KD VS++++I+GY                                
Sbjct: 100 RSVLDARNVFDQMRRKDMVSWTSLIAGY-------------------------------A 128

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
           QN+     + L+  M     +PN  T +S+      +++   G++IH  AVK  +  ++Y
Sbjct: 129 QNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVY 188

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V +A++D YA+ G +  A  VFD+   ++ + W A+IS +A  GD   A+  F EML NG
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNG 248

Query: 271 IQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            +    T+++V S+ A  G +++  W   + +  +  +   V +   ++ + +++  + +
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGN--TLLDMYAKSGSMID 306

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE----NTGNYIIMAN 385
           A +   ++  K     W ++L   +  G   LGK    H  E+       N   ++ +  
Sbjct: 307 ARKVFDRVDNKDLV-TWNSMLTAFAQYG---LGKEAVSHFEEMRKSGVYLNQITFLCILT 362

Query: 386 LYSQAGRWDEADRVREQMKESGL 408
             S  G   E  R  E MKE  L
Sbjct: 363 ACSHGGLVKEGKRYFEMMKEYDL 385



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           LDL   + A  + P      S  +  +   NL+  ++IH +   +R+  + ++  ++I  
Sbjct: 39  LDL---LDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y K   +  A+ VFD+ + + ++ WT++I+ YA +    +A+ L   ML    +P+  TF
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 279 TAVLSAC---AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            ++L A    A SG   +     +A++ + G    V   + ++ + +R  ++  AT    
Sbjct: 156 ASLLKAAGAYADSGTGRQ----IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFD 211

Query: 336 KMPVKPSAKVWGALLYGASISGDVE 360
           K+  K     W AL+ G +  GD E
Sbjct: 212 KLDSKNGVS-WNALISGFARKGDGE 235


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 258/440 (58%), Gaps = 1/440 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+VSW  M+  Y Q   Y+E    F +M NS VL  D + + +VL ACG    +  
Sbjct: 131 MAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS-DQLILATVLSACGHIRHLRT 189

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H++++ S I ++  + +ALI +YA C S++ A  L + M  KD VS +A++ GY  
Sbjct: 190 GKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYAR 249

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +   E A  +F  M    + +W+A+ISG   +N+    L L  +MQ  G+RP+ VT+ S+
Sbjct: 250 NRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSV 309

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++  +L   K IH +   N  ++ +++  A+ID +AK G ++ A  +F+    +++
Sbjct: 310 ISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNV 369

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT++I+A+A HGD   A+ LF +M N G++P+ VTF  +L AC H+GLV +   +F++
Sbjct: 370 ITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSS 429

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  QYGI+P  EHY CMV +L RA+ + EA   +  M ++P+  VWG+LL    + GD++
Sbjct: 430 MVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLK 489

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG F    + +++P + G  ++++ +Y ++   ++A  VR+ MK  G++K  G SW++ +
Sbjct: 490 LGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLN 549

Query: 421 GGLQSFVAKDTSGDKSEQIY 440
                F A      ++++I+
Sbjct: 550 EPFHEFTAGGEKYPENDKIF 569



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 66/315 (20%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           D ++  AL+G YA CG +  AR + D M+ +D VS+  ++  Y                 
Sbjct: 104 DGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSY----------------- 146

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
                            N  EA+L   + M+ SGV  + + ++++ S   H  +L+ GK 
Sbjct: 147 -------------CQTRNYKEALLQFAK-MKNSGVLSDQLILATVLSACGHIRHLRTGKS 192

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR------------------------- 230
           IH Y + +    N ++++A+I+ YA    +  A++                         
Sbjct: 193 IHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRK 252

Query: 231 ------VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
                 +FD    + ++ W+A+IS YA     ++A+SLFN+M   GI+PD VT  +V+SA
Sbjct: 253 FEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISA 312

Query: 285 CAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           CA+ G +DKA W   +A     G+   +     ++ + ++   I+ A    ++MP K + 
Sbjct: 313 CANLGSLDKAKW--IHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQK-NV 369

Query: 344 KVWGALLYGASISGD 358
             W +++   ++ GD
Sbjct: 370 ITWTSMITAFAMHGD 384


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 255/441 (57%), Gaps = 33/441 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++VSWNSMIAGYS  G  + C  LFR M +   +RP   T+ S+L AC +S ++  
Sbjct: 460 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM-DEEGIRPTLTTLSSILMACSRSVNLQL 518

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++I + ++ D+++ ++LI +Y KCG++  A                        
Sbjct: 519 GKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE----------------------- 555

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   ++FQ M +  + +WN +ISG V+   +   L +  +M+ +GV+P+A+T +S+
Sbjct: 556 --------NVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSV 607

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  + L+ GKEIH + ++++ + N  V  A++D YAK G +  A  +F++   R  
Sbjct: 608 LPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDF 667

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+AY +HG A +A+ LF +M  +  +PD VTF A+LSAC+H+GLVD+    FN 
Sbjct: 668 VSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQ 727

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDV 359
           M  +YG +P+VEHY+C++ +L R  R+ EA E + + P ++    +   L     +   +
Sbjct: 728 MIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKL 787

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +LG+ +   L E +P++   YII++N+Y+   +WDE  +VR ++KE GL K PG SWIE 
Sbjct: 788 DLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 847

Query: 420 SGGLQSFVAKDTSGDKSEQIY 440
              +  FV +D S  +++ IY
Sbjct: 848 GKRIHPFVVEDKSHPQADMIY 868



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 209/437 (47%), Gaps = 69/437 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI  WN ++A  ++   + E   +F  +L+ P L+PD  T  SVL+AC     + +G  V
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 320

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+S   MD+ + ++ +GMYAKC   + A  L DEM ++D                 
Sbjct: 321 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERD----------------- 363

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                         +++WN VIS   Q+ + E  L+L  EM+ SG +P++VT++++ S  
Sbjct: 364 --------------VASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 409

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L+ GKEIH   V++ +  + +V++A++D Y K G L  A+ VF++ + ++++ W 
Sbjct: 410 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWN 469

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA------------------ 286
           ++I+ Y+  GD+   + LF  M   GI+P   T +++L AC+                  
Sbjct: 470 SMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN 529

Query: 287 --------HSGLVDKAWDIFNAMSGQYGIQ----PSVEHYACMVGVLSRARRISEATEFV 334
                   +S L+D  +   N  S +   Q     +V  +  M+    +     EA    
Sbjct: 530 RVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIF 589

Query: 335 SKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA---NLYS 388
           + M    VKP A  + ++L   S    +E GK +  H F IE +   N ++M    ++Y+
Sbjct: 590 TDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEI--HNFIIESKLEINEVVMGALLDMYA 647

Query: 389 QAGRWDEADRVREQMKE 405
           + G  DEA  +  Q+ E
Sbjct: 648 KCGAVDEALHIFNQLPE 664


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 256/455 (56%), Gaps = 32/455 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIVFG 61
           +R++V W +MI GY + G + E  +LFR+ML S   ++P+  T+V +L AC    +   G
Sbjct: 188 RRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVG 247

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +  F+  + I ++  +  ALI MY+KCG                              
Sbjct: 248 RFLSVFIDVNKIPLNTILVTALIDMYSKCGD----------------------------- 278

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
             VEKA  +F  +    L +WNA+I+G VQ    E  +DL R M+A  V+PN +T+ ++ 
Sbjct: 279 --VEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVL 336

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +    L+ G+E+H Y  +N  D N+ +ATA++D YAK G +  A  +F +   + + 
Sbjct: 337 SACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVA 396

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +W A+I   A HGD   ++++F++M+  G+QP+ VTF  VLSAC HSGLV++    F++M
Sbjct: 397 LWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSM 456

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + ++G+ P +EHYACMV +L RA  + EA E V  M + P + +WGALL    I  ++EL
Sbjct: 457 ADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLEL 516

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
              + + +   +  N G  I+++N+Y+ +GRW +  RVR Q+KE  + K  G SW+E  G
Sbjct: 517 ADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDG 576

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FV +DT+  KS +IY   E L+  ++ EGYV
Sbjct: 577 VVHRFVVEDTTHLKSGEIYGAYEILVNHLKAEGYV 611



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 187/354 (52%), Gaps = 6/354 (1%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           SWNS+I  Y+  G  +    L+ +ML S   +P   T   VL+AC     ++ G ++H  
Sbjct: 60  SWNSLIRAYTVHGSPQNSLFLYLKMLRSST-KPSNFTFPFVLKACSTLGSVLEGEQIHTH 118

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V+      DL++CN+LI MY KC  LD AR   D+M  +DEVS+++IISGY+  G VEKA
Sbjct: 119 VLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKA 178

Query: 128 MDLFQVMK-RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISSIFSLF 184
            DLF+ M  R  +  W A+I+G  +      +L L R+M  S   V+PNA T+  + S  
Sbjct: 179 RDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSAC 238

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S   N + G+ +  +   N+   N  + TA+ID Y+K G +  A R+FD    ++L  W 
Sbjct: 239 STLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWN 298

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           AII+     G   +A+ L+  M    ++P+ +T   VLSACA  G ++   ++   + G+
Sbjct: 299 AIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYL-GR 357

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            G+  +V     +V + ++  +I +A     K   K  A +W A++ G +  GD
Sbjct: 358 NGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVA-LWNAMILGLAYHGD 410



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 98/242 (40%), Gaps = 12/242 (4%)

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + SL    ++L    +IH   + +      ++   +ID ++    +  A+ V D+    +
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPT 57

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
              W ++I AY  HG    ++ L+ +ML +  +P   TF  VL AC+  G V +   I  
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +  + G    +     ++ +  +  R+  A  F   M  +     W +++ G    G V
Sbjct: 118 HVL-RLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVS-WNSIISGYVQWGQV 175

Query: 360 ELGKFVCDHLFEIEP--ENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           E  +     LFE  P   N   +  M N Y + G + E   +  QM  S     P  + +
Sbjct: 176 EKAR----DLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATM 231

Query: 418 EC 419
            C
Sbjct: 232 VC 233


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 256/472 (54%), Gaps = 40/472 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            R +V+W ++IAG  Q G +      F  M    + +P+  T     +A G     + G 
Sbjct: 70  NRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI-QPNDFTFPCAFKASGSLRSPLVGK 128

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH   +++    D+++  +   MY+K G  + AR + DE                    
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDE-------------------- 168

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                      M    ++TWNA +S  V   R++  L    E +  G+ P    +SS+ S
Sbjct: 169 -----------MPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLS 217

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S L+ GK +H  AVK     NI+V +A++D Y K G +  A+R FD    R+L+ 
Sbjct: 218 ACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVT 277

Query: 243 WTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           W A+I  YA  G A  AV+LF+EM   ++ + P+ VTF  VLSAC+ +G V+   +IF +
Sbjct: 278 WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFES 337

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M G+YGI+P  EHYAC+V +L RA  + +A +F+ KMP++P+  VWGALL  + + G  E
Sbjct: 338 MRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 397

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   D+LFE++P ++GN+++++N+++ AGRW+EA  VR++MK+ G+ K  G SWI   
Sbjct: 398 LGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAG 457

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEESA 466
             +  F AKDTS +++ +I  +L +L G M   GY+      L D  EEE A
Sbjct: 458 NAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKA 509



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 34/259 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+I +WN+ ++     G Y++    F E     +  P    V SVL AC   S +  
Sbjct: 169 MPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGI-EPTDFMVSSVLSACAGLSVLEV 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH   +++ +  ++++ +AL+ MY KCGS++ A    DEM +++ V+++A+I GY  
Sbjct: 228 GKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAH 287

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  + A+ LF  M                                +  V PN VT   +
Sbjct: 288 QGQADMAVTLFDEMT-----------------------------CGSHRVAPNYVTFVCV 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S  S   ++  G EI   +++ RY  +        ++D   + G +  A +   +   R
Sbjct: 319 LSACSRAGSVNVGMEIF-ESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR 377

Query: 239 SLI-IWTAIISAYAAHGDA 256
             + +W A++ A    G +
Sbjct: 378 PTVSVWGALLGASKMFGKS 396



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 44/238 (18%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++   +++ Y+K    + AQ +      RS++ WTA+I+    +G  + A+  F+ M  +
Sbjct: 43  FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD 102

Query: 270 GIQPDPVTFTAVLSACA--HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-MVGVLSRARR 326
            IQP+  TF     A     S LV K        +GQ     S     C    + S+A  
Sbjct: 103 SIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQI----SDVFVGCSAFDMYSKAGL 158

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISG--DVELGKFVCDHLFEIEPEN-------- 376
             EA +   +MP +  A  W A L  + + G  D  L  F+      IEP +        
Sbjct: 159 TEEARKMFDEMPERNIA-TWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLS 217

Query: 377 -----------------------TGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
                                   GN  +   + ++Y + G  ++A+R  ++M E  L
Sbjct: 218 ACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 275


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 260/455 (57%), Gaps = 41/455 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVV-SVLQACGQSSDIVFGME 63
           ++  W ++I   ++ GFY+   A+F EM     L P+ V V+ SVL+ACG   D + G +
Sbjct: 92  NVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEK 151

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F+++   ++D ++ ++LI MY+KC  ++ AR + D M+ KD V+ +A+++GY+  G 
Sbjct: 152 IHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGA 211

Query: 124 VEKAMDLFQVMK----RPGLSTWNA----------------------------------- 144
             +A+ L + MK    +P + TWN+                                   
Sbjct: 212 ANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTS 271

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           VISG VQN R++   D  ++M + G  P + TIS++    +  + +  G+EIHGYA+   
Sbjct: 272 VISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTG 331

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
            + +IYV +A++D YAK GF+  A+ +F R   ++ + W +II  +A HG   +A+ LFN
Sbjct: 332 VEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFN 391

Query: 265 EMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           +M   G+ + D +TFTA L+AC+H G  +    +F  M  +Y I+P +EHYACMV +L R
Sbjct: 392 QMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGR 451

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           A ++ EA   +  MP++P   VWGALL        VEL +    HL E+EPE+  N +++
Sbjct: 452 AGKLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELAEVAAMHLMELEPESAANPLLL 511

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +++Y+ AG+W + +RV++++K+  L K+ G SWIE
Sbjct: 512 SSVYADAGKWGKFERVKKRIKKGKLRKLQGLSWIE 546



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 158/353 (44%), Gaps = 42/353 (11%)

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  ++ +       + + L+  Y  CG L +AR L D++   +   + A+I     
Sbjct: 46  GKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCAR 105

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAV-TIS 178
            GF + A+ +F                                EMQA  G+ PN V  I 
Sbjct: 106 CGFYDHALAVFS-------------------------------EMQAVQGLTPNYVFVIP 134

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+     H  +   G++IHG+ +K  ++ + +V++++I  Y+K   +  A++VFD    +
Sbjct: 135 SVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVK 194

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             +   A+++ Y   G A++A+ L   M   G++P+ VT+ +++S  +  G   +  +IF
Sbjct: 195 DTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIF 254

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASI 355
             M    G++P V  +  ++    +  R  EA +   +M      P++    ALL   + 
Sbjct: 255 RLMIAD-GVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACAT 313

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKE 405
           +  V +G+ +  H + +     G+  +   + ++Y++ G   EA  +  +M E
Sbjct: 314 AARVSVGREI--HGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPE 364



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 34/172 (19%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV------------------------- 37
           K ++V+WNS+I+G+SQ G       +FR M+   V                         
Sbjct: 228 KPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFD 287

Query: 38  ---------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
                      P   T+ ++L AC  ++ +  G E+H + + + ++ D+++ +AL+ MYA
Sbjct: 288 TFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYA 347

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           KCG +  AR L   M +K+ V++++II G+  HG+ E+A++LF  M++ G++
Sbjct: 348 KCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVA 399



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 43/227 (18%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           R    + + +  +++    L  GK++H + V N + R   VA+ ++  Y   G L  A++
Sbjct: 24  RSEPESYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARK 83

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPV-TFTAVLSACAHS 288
           +FD+    ++  W A+I + A  G    A+++F+EM    G+ P+ V    +VL AC H 
Sbjct: 84  LFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHV 143

Query: 289 G-----------------------------------LVDKAWDIFNAMSGQYGIQPSVEH 313
           G                                    V+ A  +F+ M+    ++ +V  
Sbjct: 144 GDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMT----VKDTVAL 199

Query: 314 YACMVGVLSR--ARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            A + G + +  A       E +  M +KP+   W +L+ G S  GD
Sbjct: 200 NAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGD 246



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ V+WNS+I G++  G+ EE   LF +M    V + D +T  + L AC    D   
Sbjct: 362 MPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFEL 421

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G  +   + E +    +++ + C  ++ +  + G L  A  ++  M  + D   + A+++
Sbjct: 422 GQRLFKIMQEKYSIEPRLEHYAC--MVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLA 479

Query: 117 GYMVHGFVEKA 127
               H  VE A
Sbjct: 480 ACRNHRHVELA 490


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 264/473 (55%), Gaps = 7/473 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           + +++V +N++++ Y    +  +   +  EML     RPD VT++S + AC Q  D+  G
Sbjct: 293 ANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGP-RPDKVTMLSTIAACAQLGDLSVG 351

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
              H +V+ + ++    I NA+I MY KCG  + A  + + M +K  V+++++I+G +  
Sbjct: 352 KSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRD 411

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +E A  +F  M    L +WN +I  LVQ +  E  ++L REMQ  G+  + VT+  I 
Sbjct: 412 GDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIA 471

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S   +   L   K +  Y  KN    ++ + TA++D +++ G    A  VF R + R + 
Sbjct: 472 SACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVS 531

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTA I   A  G+   A+ LFNEML   ++PD V F A+L+AC+H G VD+   +F +M
Sbjct: 532 AWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSM 591

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              +GI+P + HY CMV +L RA  + EA + +  MP++P+  VWG+LL       +VEL
Sbjct: 592 EKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVEL 651

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
             +  + L ++ PE  G +++++N+Y+ AG+W +  RVR QMKE G+ K+PG S IE  G
Sbjct: 652 AHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQG 711

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAYV 468
            +  F + D S  ++  I L+LE +   + E GY      VLLD  E+E  ++
Sbjct: 712 LIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHL 764



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 196/410 (47%), Gaps = 50/410 (12%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N +I GY+  G  ++   L+ +ML   ++ PD  T   +L AC +   +  G++VH  V
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIV-PDKYTFPFLLSACSKILALSEGVQVHGAV 156

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++  ++ D+++ N+LI  YA+CG +D  R L D M +++ VS++++I+GY      ++A+
Sbjct: 157 LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAV 216

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF                                +M  +GV PN VT+  + S  +   
Sbjct: 217 SLF-------------------------------FQMGEAGVEPNPVTMVCVISACAKLK 245

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ GK++  Y  +   + +  +  A++D Y K G +  A+++FD    ++L+++  I+S
Sbjct: 246 DLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMS 305

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV-----DKAWDIFNAMSG 303
            Y  H  AS  + + +EML  G +PD VT  + ++ACA  G +       A+ + N + G
Sbjct: 306 NYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEG 365

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
              I  ++      + +  +  +   A +    MP K +   W +L+ G    GD+EL  
Sbjct: 366 WDNISNAI------IDMYMKCGKREAACKVFEHMPNK-TVVTWNSLIAGLVRDGDMELAW 418

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + D + E    +  ++  M     Q   ++EA  +  +M+  G   IPG
Sbjct: 419 RIFDEMLE---RDLVSWNTMIGALVQVSMFEEAIELFREMQNQG---IPG 462



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 203/470 (43%), Gaps = 100/470 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW S+I GYS     +E  +LF +M  + V  P+ VT+V V+ AC +  D+  
Sbjct: 191 MLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGV-EPNPVTMVCVISACAKLKDLEL 249

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V +++ E  +++   + NAL+ MY KCG +  AR + DE ++K+ V Y+ I+S Y+ 
Sbjct: 250 GKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVH 309

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           H   E A D                            VL ++ EM   G RP+ VT+ S 
Sbjct: 310 H---EWASD----------------------------VLVILDEMLQKGPRPDKVTMLST 338

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L  GK  H Y ++N  +    ++ AIID Y K G    A +VF+    +++
Sbjct: 339 IAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTV 398

Query: 241 IIWTAIISAYAAHGDA-------------------------------SKAVSLFNEMLNN 269
           + W ++I+     GD                                 +A+ LF EM N 
Sbjct: 399 VTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQ 458

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKA-W--------DI---------FNAMSGQYGIQPSV 311
           GI  D VT   + SAC + G +D A W        DI            M  + G   S 
Sbjct: 459 GIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSA 518

Query: 312 EH------------YACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASIS 356
            H            +   +GV++       A E  ++M    VKP   V+ ALL   S  
Sbjct: 519 MHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHG 578

Query: 357 GDVELGK---FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           G V+ G+   +  +    I P +  +Y  M +L  +AG  +EA  + + M
Sbjct: 579 GSVDQGRQLFWSMEKAHGIRP-HIVHYGCMVDLLGRAGLLEEAVDLIQSM 627



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 81/148 (54%)

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           L  +N +I G       +  + L  +M   G+ P+  T   + S  S    L  G ++HG
Sbjct: 95  LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
             +K   + +I+V+ ++I  YA+ G +   +++FD    R+++ WT++I+ Y+    + +
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           AVSLF +M   G++P+PVT   V+SACA
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACA 242



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 46/252 (18%)

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-------DRNIYVATAI-IDT 218
           AS    N +T +S   L  +   LK  K++H   +K          + N  +A+++ I T
Sbjct: 15  ASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGT 74

Query: 219 YAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
                +   A+  F    G   SL ++  +I  YA+ G   +A+ L+ +ML  GI PD  
Sbjct: 75  LESLDY---ARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKY 131

Query: 277 TFTAVLSACAHSGLVDKAWDIFNA-----MSGQYGIQPSVEHYACMVGVLSRARRI---- 327
           TF  +LSAC+    + +   +  A     + G   +  S+ H+    G +   R++    
Sbjct: 132 TFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGM 191

Query: 328 ---------------------SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGK 363
                                 EA     +M    V+P+      ++   +   D+ELGK
Sbjct: 192 LERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGK 251

Query: 364 FVCDHLFEIEPE 375
            VC ++ E+  E
Sbjct: 252 KVCSYISELGME 263


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 267/468 (57%), Gaps = 18/468 (3%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM- 62
           RD++SWN+MI+GY+Q G   + + LF E   SPV   D  T  +++ A  Q      GM 
Sbjct: 217 RDLISWNTMISGYAQDGDLSQARRLFEE---SPVR--DVFTWTAMVYAYVQD-----GML 266

Query: 63  -EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E      E   K ++   N +I  YA+   +D  R L +EM   +  S++ +ISGY  +
Sbjct: 267 DEARRVFDEMPQKREMSY-NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQN 325

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G + +A +LF +M +    +W A+I+G  QN  +E  ++++ EM+  G   N  T     
Sbjct: 326 GDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCAL 385

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +  + L+ GK++HG  V+  Y++   V  A++  Y K G +  A  VF   + + ++
Sbjct: 386 SACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIV 445

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  +++ YA HG   +A+++F  M+  G++PD +T   VLSAC+H+GL D+  + F++M
Sbjct: 446 SWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSM 505

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  YGI P+ +HYACM+ +L RA  + EA   +  MP +P A  WGALL  + I G++EL
Sbjct: 506 NKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMEL 565

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+   + +F++EP N+G Y++++NLY+ +GRW +  ++R +M++ G+ K PG SW+E   
Sbjct: 566 GEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQN 625

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            + +F   D    +  +IY  LE L   M+ EGYV     +L +VEEE
Sbjct: 626 KIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEE 673



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 172/408 (42%), Gaps = 94/408 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VS+N+MI+GY +   +   + LF +M +                          
Sbjct: 59  MPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK------------------------- 93

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                          DL+  N ++  YA+   L  AR L D M +KD VS++A++SGY+ 
Sbjct: 94  ---------------DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVR 138

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V++A D+F  M      +WN +++  V++ R E    L                   
Sbjct: 139 SGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRL------------------- 179

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                                +++ D  +     ++  Y K   L  A+++FD+   R L
Sbjct: 180 --------------------FESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDL 219

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  +IS YA  GD S+A  LF E        D  T+TA++ A    G++D+A  +F+ 
Sbjct: 220 ISWNTMISGYAQDGDLSQARRLFEE----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDE 275

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M      Q     Y  M+   ++ +R+    E   +MP  P+   W  ++ G   +GD+ 
Sbjct: 276 MP-----QKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDLA 329

Query: 361 LGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
             +    +LF++ P+ ++ ++  +   Y+Q G ++EA  +  +MK  G
Sbjct: 330 QAR----NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 247/444 (55%), Gaps = 1/444 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+ SWN MI+GY++   YEE   L  EM  + ++ P  VT++ VL AC +  D     
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDKDLCK 256

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH +V E   +  L + NAL+  YA CG +D A  +   M  +D +S+++I+ GY+  G
Sbjct: 257 RVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERG 316

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A   F  M      +W  +I G ++       L++ REMQ++G+ P+  T+ S+ +
Sbjct: 317 NLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLT 376

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +H  +L+ G+ I  Y  KN+   ++ V  A+ID Y K G    AQ+VF     R    
Sbjct: 377 ACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT 436

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA++   A +G   +A+ +F +M +  IQPD +T+  VLSAC HSG+VD+A   F  M 
Sbjct: 437 WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMR 496

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             + I+PS+ HY CMV +L RA  + EA E + KMP+ P++ VWGALL  + +  D  + 
Sbjct: 497 SDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMA 556

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     + E+EP+N   Y ++ N+Y+   RW +   VR ++ +  + K PG S IE +G 
Sbjct: 557 ELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616

Query: 423 LQSFVAKDTSGDKSEQIYLILERL 446
              FVA D S  +SE+IY+ LE L
Sbjct: 617 AHEFVAGDKSHLQSEEIYMKLEEL 640



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 64/317 (20%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IVFGME 63
           D+V WN+MI G+S+     E   L+  ML   V  PD  T   +L    +    +  G +
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGV-TPDSHTFPFLLNGLKRDGGALACGKK 156

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  V++  +  +L++ NAL+ MY+ CG +D AR + D    +D  S             
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS------------- 203

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +ISG  +   +E  ++L+ EM+ + V P +VT+  + S 
Sbjct: 204 ------------------WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +    K +H Y  + + + ++ +  A+++ YA  G +  A R+F   K R +I W
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305

Query: 244 TAIISAYAAHGDA-------------------------------SKAVSLFNEMLNNGIQ 272
           T+I+  Y   G+                                ++++ +F EM + G+ 
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365

Query: 273 PDPVTFTAVLSACAHSG 289
           PD  T  +VL+ACAH G
Sbjct: 366 PDEFTMVSVLTACAHLG 382



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 42/287 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD +SW  MI GY + G + E   +FREM ++ ++ PD  T+VSVL AC     +  
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEI 386

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++ ++ IK D+ + NALI MY KCG  + A+ +  +M  +D+ +++A+      
Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAM------ 440

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                    + GL  N + +  + +  +MQ   ++P+ +T   +
Sbjct: 441 -------------------------VVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGV 475

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236
            S  +H   +   ++   +  K R D  I  +      ++D   + G +  A  +  +  
Sbjct: 476 LSACNHSGMVDQARK---FFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532

Query: 237 -GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
              + I+W A++ A   H D   A     ++L   ++PD     A+L
Sbjct: 533 MNPNSIVWGALLGASRLHNDEPMAELAAKKILE--LEPDNGAVYALL 577



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G V  A  LF  +  P +  WN +I G  + +     + L   M   GV P++ T   + 
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 182 S-LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           + L      L  GK++H + VK     N+YV  A++  Y+  G +  A+ VFDR     +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  +IS Y    +  +++ L  EM  N + P  VT   VLSAC+     D    +   
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +S +   +PS+     +V   +    +  A      M  +     W +++ G    G+++
Sbjct: 262 VS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS-WTSIVKGYVERGNLK 319

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           L +   D   ++   +  ++ IM + Y +AG ++E+  +  +M+ +G+
Sbjct: 320 LARTYFD---QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 250/453 (55%), Gaps = 32/453 (7%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN++I  Y+     E    +F +ML++ VL PD  T    L++CG  S +  G ++H  V
Sbjct: 76  WNTIIRAYANSPTPEAALTIFHQMLHASVL-PDKYTFTFALKSCGSFSGVEEGRQIHGHV 134

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++ +  DL+I N LI +YA CG ++ AR LLD M ++D VS++A++S Y   G +E A 
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAC 194

Query: 129 DLFQVMKRPGLSTWNAVISGLV-------------------------------QNNRHEA 157
            LF  M    + +WN +ISG V                                  R   
Sbjct: 195 HLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSE 254

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           VL L  +MQ +GV+P+  T+ S+ S  +H   L  G+ +H Y  KN    + +VATA++D
Sbjct: 255 VLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVD 314

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y+K G +  A  VF+    + +  W +IIS  + HG    A+ +F+EML  G +P+ VT
Sbjct: 315 MYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVT 374

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           F  VLSAC+ +GL+D+  ++FN M   +GIQP++EHY CMV +L R   + EA E V KM
Sbjct: 375 FVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKM 434

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
           P K ++ VW +LL      G+VEL + V   L E+ P+ + +++ ++N+Y+  GRW +  
Sbjct: 435 PQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVM 494

Query: 398 RVREQMKESGLAKIPGRSWIECSGGLQSFVAKD 430
            VR++M+  G+ K PG S IE  G +  F+A +
Sbjct: 495 EVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 34/266 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSWN+MI GYS  G + E   LF +M ++ V +PD  T+VSVL AC     +  G  
Sbjct: 234 KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV-KPDNCTLVSVLSACAHVGALSQGEW 292

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH ++ ++ I +D ++  AL+ MY+KCGS++ A  + +    KD  ++++IISG   HG 
Sbjct: 293 VHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGS 352

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            + A+ +F                                EM   G +PN VT   + S 
Sbjct: 353 GQHALQIFS-------------------------------EMLVEGFKPNEVTFVCVLSA 381

Query: 184 FSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLI 241
            S    L  G+E+    V  +     I     ++D   + G L  A+ +  +   + + +
Sbjct: 382 CSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASV 441

Query: 242 IWTAIISAYAAHGDASKAVSLFNEML 267
           +W +++ A   HG+   A  +  ++L
Sbjct: 442 VWESLLGACRNHGNVELAERVAQKLL 467



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +  A  +F  +  P    WN +I     +   EA L +  +M  + V P+  T +     
Sbjct: 58  IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
              FS ++ G++IHG+ +K     ++++   +I  YA  G +  A+ + DR   R ++ W
Sbjct: 118 CGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSW 177

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A++SAYA  G    A  LF+EM    ++    ++  ++S     GL+++A  +F    G
Sbjct: 178 NALLSAYAERGLMELACHLFDEMTERNVE----SWNFMISGYVGVGLLEEARRVF----G 229

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
           +  ++  V   A + G  S A R SE       M    VKP      ++L   +  G + 
Sbjct: 230 ETPVKNVVSWNAMITG-YSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALS 288

Query: 361 LGKFV 365
            G++V
Sbjct: 289 QGEWV 293



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 20/214 (9%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG---AQRVFDRFKGRSLIIWTAIISAYA 251
           + H + +K+    + + A+ +I + +          A  +F R    +  +W  II AYA
Sbjct: 25  QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-----NAMSGQYG 306
                  A+++F++ML+  + PD  TFT  L +C     V++   I        +     
Sbjct: 85  NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           IQ ++ H     G +  AR +      + +M ++     W ALL   +  G +EL    C
Sbjct: 145 IQNTLIHLYASCGCIEDARHL------LDRM-LERDVVSWNALLSAYAERGLMELA---C 194

Query: 367 DHLF-EIEPENTGNYIIMANLYSQAGRWDEADRV 399
            HLF E+   N  ++  M + Y   G  +EA RV
Sbjct: 195 -HLFDEMTERNVESWNFMISGYVGVGLLEEARRV 227


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 257/468 (54%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y+E   LF+EM+ + V RPD  T+V+VL AC QS  +  G +
Sbjct: 161 KDVVSWNAMISGYAETGSYKEALELFKEMMKTNV-RPDEGTMVTVLSACAQSRSVELGRQ 219

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y+KCG                                
Sbjct: 220 VHSWIDDHGFGSNLKIVNALIDLYSKCGQ------------------------------- 248

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A  LF+ +    + +WN +I G    N ++  L L +EM  SG  PN VTI SI   
Sbjct: 249 VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPA 308

Query: 184 FSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K   D      + T++ID YAK G +  A +VF+    +SL 
Sbjct: 309 CAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 368

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A+    LF+ M  NGI+PD +TF  +LSAC+HSG +D    IF +M
Sbjct: 369 SWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSM 428

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y I P +EHY CM+ +L  +    EA E +  MP++P   +W +LL      G++EL
Sbjct: 429 TQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLEL 488

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    +L ++EPEN G+Y++++N+Y+ AG WDE  +VR  +   G+ K+PG S IE   
Sbjct: 489 AESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDS 548

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 549 EVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEE 596



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 208/410 (50%), Gaps = 26/410 (6%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+M+ GY+          L+  M++  +L P+  T   +L++C +S     G ++H  V
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLL-PNSYTFPFLLKSCAKSKAFEEGQQIHGHV 92

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++   + DL++  +LI MYA+ G L+ A  + D  S +D VSY+A+I+GY   G +  A 
Sbjct: 93  LKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQ 152

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           ++F  +    + +WNA+ISG  +   ++  L+L +EM  + VRP+  T+ ++ S  +   
Sbjct: 153 EMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSR 212

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +++ G+++H +   + +  N+ +  A+ID Y+K G +  A  +F+    + ++ W  +I 
Sbjct: 213 SVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIG 272

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----------KAWDI 297
            Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D           K  D+
Sbjct: 273 GYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDV 332

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            NA        PS+     ++ + ++   I  A +  + M +  S   W A+++G ++ G
Sbjct: 333 TNA--------PSLR--TSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHG 381

Query: 358 DVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
               G  +   + +  IEP++   ++ + +  S +G+ D    + + M +
Sbjct: 382 RANAGFDLFSRMRKNGIEPDDI-TFVGLLSACSHSGKLDLGRHIFKSMTQ 430



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D+VSWN++I GY+    Y+E   LF+EML S    P+ VT+VS+L AC     I  
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTIVSILPACAHLGAIDI 317

Query: 61  GMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G  +H ++ +    +     +  +LI MYAKCG ++ A  + + M  K   S++A+I G+
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-----QASGVRPN 173
            +HG      DLF  M++ G+   +    GL+    H   LDL R +     Q   + P 
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437

Query: 174 AVTISSIFSLFSHFSNLKGGKEI 196
                 +  L  H    K  KE+
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEM 460



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F  ++ P    WN ++ G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-------- 238
               + G++IHG+ +K  Y+ ++YV T++I  YA+ G L  A +VFDR   R        
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 239 -----------------------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
                                   ++ W A+IS YA  G   +A+ LF EM+   ++PD 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 276 VTFTAVLSACAHSGLVD 292
            T   VLSACA S  V+
Sbjct: 199 GTMVTVLSACAQSRSVE 215


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 271/470 (57%), Gaps = 15/470 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+  +MI GY Q G   E + LF EM   P  R + V+  +++    Q+  +  
Sbjct: 248 MPEKDVVTRTNMIGGYCQVGRLVEARMLFDEM---P--RRNVVSWTTMITGYVQNQQVDI 302

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++   + E +     W   A++  Y  CG LD A  L + M  K  V+ +A+I  +  
Sbjct: 303 ARKLFEVMPEKNEVS--W--TAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQ 358

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V KA  +F  M+     TW+A+I    +       L+L R MQ  G+RPN  ++ S+
Sbjct: 359 NGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISV 418

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+ +  +NL  G+EIH   V++++D ++YVA+ ++  Y K G L  A++VFDRF  + +
Sbjct: 419 LSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDV 478

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W +II+ YA HG   +A+ +F++M  +GI PD VTF  VLSAC+++G V K  +IFN+
Sbjct: 479 VMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNS 538

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++  +EHYACMV +L RA +++EA + + KMP++  A +WGALL        ++
Sbjct: 539 METKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLD 598

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L  +EP+N G +I+++N+Y+  GRWD+   +R  M++  ++K PG SWI   
Sbjct: 599 LAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVE 658

Query: 421 GGLQSFVAKDTSG-DKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
             +  F   D+SG  +  +I  ILE L GL+RE GY      +L +V+EE
Sbjct: 659 KKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEE 708



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 165/359 (45%), Gaps = 23/359 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R+ +SWN +++GY   G   E + +F  M    V+    +    V +     ++ +F
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLF 214

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                  V+        W    ++G   + G +D A  L D M +KD V+ + +I GY  
Sbjct: 215 WQMPEKNVVS-------W--TVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQ 265

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A  LF  M R  + +W  +I+G VQN +    +D+ R++       N V+ +++
Sbjct: 266 VGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQ----VDIARKLFEVMPEKNEVSWTAM 321

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
              +++   L    E+ +   +K     ++    A+I  + + G +  A++VFD+ + + 
Sbjct: 322 LKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILCFGQNGEVPKARQVFDQMREKD 376

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
              W+A+I  Y   G    A+ LF  M   GI+P+  +  +VLS CA    +D   +I  
Sbjct: 377 EGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHA 436

Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +   Q+ +   V   + ++ +  +   +++A +   +  VK    +W +++ G +  G
Sbjct: 437 QLVRSQFDLDVYVA--SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQHG 492



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 153/328 (46%), Gaps = 21/328 (6%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N+LI  Y++ G ++ AR + DEM DK+ +S+++I++GY  +   ++A ++F  M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN ++SG + N     +++  RE+       N V+ +++   +     +   + +    
Sbjct: 162 SWNGLVSGYINN----GMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
                ++N+   T ++    + G +  A R+FD    + ++  T +I  Y   G   +A 
Sbjct: 218 P----EKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEAR 273

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            LF+EM    +    V++T +++    +  VD A  +F  M  +  +      +  M+  
Sbjct: 274 MLFDEMPRRNV----VSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
            +   R+ EA+E  + MP+K S     A++     +G+V   + V D + E   ++ G +
Sbjct: 325 YTNCGRLDEASELFNAMPIK-SVVACNAMILCFGQNGEVPKARQVFDQMRE---KDEGTW 380

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGL 408
             M  +Y + G   +A  +   M+  G+
Sbjct: 381 SAMIKVYERKGLELDALELFRMMQREGI 408



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 63/333 (18%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           +S +++I+ Y   G +EKA  +F  M+   + +WN++++G  QN R +   ++  +M   
Sbjct: 99  ISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS-- 156

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
                                                +RN      ++  Y   G ++ A
Sbjct: 157 -------------------------------------ERNTISWNGLVSGYINNGMINEA 179

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           + VFDR   R+++ WTA++  Y   G  S+A +LF +M    +    V++T +L      
Sbjct: 180 REVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQE 235

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G +D+A  +F+ M      +  V     M+G   +  R+ EA     +MP + +   W  
Sbjct: 236 GRIDEACRLFDMMP-----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMP-RRNVVSWTT 289

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           ++ G   +  V++ +     LFE+ PE N  ++  M   Y+  GR DEA  +   M    
Sbjct: 290 MITGYVQNQQVDIAR----KLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM---- 341

Query: 408 LAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
               P +S + C+  +  F  ++    K+ Q++
Sbjct: 342 ----PIKSVVACNAMILCF-GQNGEVPKARQVF 369



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 62/347 (17%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I+S NS+I  YS+ G  E+ + +F EM +  ++  + +          Q +  +F     
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
              I        W  N L+  Y   G ++ AR + D M +++ VS++A++ GY+  G + 
Sbjct: 158 RNTIS-------W--NGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMIS 208

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A  LF  M    + +W  ++ GL+Q  R                      I     LF 
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGR----------------------IDEACRLFD 246

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                               ++++   T +I  Y + G L  A+ +FD    R+++ WT 
Sbjct: 247 MMP-----------------EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTT 289

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I+ Y  +     A  LF  M     + + V++TA+L    + G +D+A ++FNAM    
Sbjct: 290 MITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAM---- 341

Query: 306 GIQPSVEHYAC--MVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
              P     AC  M+    +   + +A +   +M  K     W A++
Sbjct: 342 ---PIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEG-TWSAMI 384


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 254/456 (55%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD++SWN++IAGY++     E   L+++M  S  ++P  VT + +L AC  SS    
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  ++ S IK +  + NAL+ MY +CGSL  A+ + +    +D +S          
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS---------- 499

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G  Q+  +E    L +EMQ   + P+ +T +S+
Sbjct: 500 ---------------------WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S   +   L+ GK+IHG   ++    ++ +  A+I+ Y + G L  A+ VF   + R +
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV 598

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFN 299
           + WTA+I   A  G+  KA+ LF +M N G +P D  TFT++LSAC H+GLV + + IF+
Sbjct: 599 MSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFS 658

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M  +YG+ P++EHY C+VG+L RARR  EA   +++MP  P A VW  LL    I G++
Sbjct: 659 SMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNI 718

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            L +   ++  ++   N   YI+++N+Y+ AGRWD+  ++R  M+  G+ K PGRSWIE 
Sbjct: 719 ALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 778

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
              +  F+A D S  ++ +IY  L+RL   M E GY
Sbjct: 779 DNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 814



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 178/352 (50%), Gaps = 34/352 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SWNS+I+ Y+Q GF ++   LF EM N+  + P+ +T +S+L AC   +++  
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPAELEN 146

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ +I++  + D  + N+L+ MY KCG L  AR +   +S +D VSY+ ++  Y  
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             +V++ + LF                                +M + G+ P+ VT  ++
Sbjct: 207 KAYVKECLGLFG-------------------------------QMSSEGISPDKVTYINL 235

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F+  S L  GK IH   V+   + +I V TA++    + G +  A++ F     R +
Sbjct: 236 LDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDV 295

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           +++ A+I+A A HG   +A   +  M ++G+  +  T+ ++L+AC+ S  ++ A  + ++
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE-AGKLIHS 354

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              + G    V+    ++ + +R   + +A E    MP K     W A++ G
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 169/363 (46%), Gaps = 44/363 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQS 55
           ++ RD+V +N++IA  +Q G   E    +  M      R DGV     T +S+L AC  S
Sbjct: 290 IADRDVVVYNALIAALAQHGHNVEAFEQYYRM------RSDGVALNRTTYLSILNACSTS 343

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +  G  +H+ + E     D+ I NALI MYA+CG L                      
Sbjct: 344 KALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDL---------------------- 381

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                     KA +LF  M +  L +WNA+I+G  +       + L ++MQ+ GV+P  V
Sbjct: 382 ---------PKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRV 432

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T   + S  ++ S    GK IH   +++    N ++A A+++ Y + G L  AQ VF+  
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + R +I W ++I+ +A HG    A  LF EM N  ++PD +TF +VLS C +   ++   
Sbjct: 493 QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I   ++ + G+Q  V     ++ +  R   + +A      +  +     W A++ G + 
Sbjct: 553 QIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCAD 610

Query: 356 SGD 358
            G+
Sbjct: 611 QGE 613



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 144/288 (50%), Gaps = 32/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD+VS+N+M+  Y+Q  + +EC  LF +M +S  + PD VT +++L A    S +  
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDE 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   +E  +  D+ +  AL+ M  +CG +D A+     ++D+D V Y         
Sbjct: 248 GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVY--------- 298

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 NA+I+ L Q+  +    +    M++ GV  N  T  SI
Sbjct: 299 ----------------------NALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSI 336

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S    L+ GK IH +  ++ +  ++ +  A+I  YA+ G L  A+ +F     R L
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           I W AII+ YA   D  +A+ L+ +M + G++P  VTF  +LSACA+S
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 77/388 (19%)

Query: 25  CKALFREMLNSPVLRP---DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81
           C     ++ N+   RP   D  T V++LQ C +   +     +H  ++E+ +  D+++ N
Sbjct: 7   CGPDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSN 66

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
            LI MY KC S+  A  +  EM  +D +S++++IS Y   GF +KA  LF+         
Sbjct: 67  LLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFE--------- 117

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                                 EMQ +G  PN +T  SI +     + L+ GK+IH   +
Sbjct: 118 ----------------------EMQNAGFIPNKITYISILTACYSPAELENGKKIHSQII 155

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           K  Y R+  V  +++  Y K G L  A++VF     R ++ +  ++  YA      + + 
Sbjct: 156 KAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLG 215

Query: 262 LFNEMLNNGIQPDPVTF-----------------------------------TAVLSACA 286
           LF +M + GI PD VT+                                   TA+++ C 
Sbjct: 216 LFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCV 275

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSA 343
             G VD A   F  ++ +      V  Y  ++  L++     EA E   +M    V  + 
Sbjct: 276 RCGDVDSAKQAFKGIADR-----DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNR 330

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFE 371
             + ++L   S S  +E GK +  H+ E
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISE 358


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 262/470 (55%), Gaps = 41/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M+ + + SWN++I G++Q G  +  KAL  + EM    +L PD  ++VS+L ACG+   +
Sbjct: 477 MNTKSVSSWNAVIGGHAQNG--DPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLL 533

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +G E+H FV+ + ++M+ ++  +L+ +Y  C    Y R   + M DK+ V         
Sbjct: 534 QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSV--------- 584

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  WNA++SG  QN      L L R+M + G+ P+ + I+
Sbjct: 585 ----------------------CWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIA 622

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    S  S L  GKE+H +A+KN    + +VA +++D YAK+GFL  +QR+F+R  G+
Sbjct: 623 SILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK 682

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +  W  +I+ +  HG  +KAV LF +M  +  QPD  TF  VL AC H+GLV +  +  
Sbjct: 683 EVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYL 742

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   Y ++P +EHYAC++ +L RA R++EA  F+++MP +P AK+W +LL  +    D
Sbjct: 743 AQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVD 802

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E+G+   + L  +E     +YI+++NLY+ AG+WD    VR++MK+  L K  G SWIE
Sbjct: 803 LEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIE 862

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
             G + SF+A + S   S++I  +  RL   + E GY      +L E+EE
Sbjct: 863 LRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEE 912



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 202/453 (44%), Gaps = 79/453 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           +  + +VSWNSMI  YS+ GF  E   L R+M +   ++  + VT++++L AC + S+++
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
               +H + +    +    I NA I  YAKCGSL +A  +   M+ K             
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS------------ 481

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                              +S+WNAVI G  QN      LD   EM   G+ P+  +I S
Sbjct: 482 -------------------VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +         L+ GKEIHG+ ++N  + N +VA +++  Y         +  F+R   ++
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKN 582

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-------------- 285
            + W A++S Y+ +   ++A+SLF +ML++G++PD +   ++L AC              
Sbjct: 583 SVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHC 642

Query: 286 ---------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV---GVL 321
                                A SG +  +  IFN ++G+      V  +  M+   GV 
Sbjct: 643 FALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK-----EVASWNVMITGFGVH 697

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG-KFVC--DHLFEIEPENTG 378
            +  +  E  E + +   +P    +  +L     +G V  G  ++     L+++EPE   
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPE-LE 756

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
           +Y  + ++  +AGR +EA     +M E   AKI
Sbjct: 757 HYACVIDMLGRAGRLNEALNFINEMPEEPDAKI 789



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 30/298 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           M +++++SWNS+I G+S+ GF+ E    FR +L S   L PD  T+V++L  C    ++ 
Sbjct: 271 MPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVD 330

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            GM +H   ++  +  +L +CNALI MY+KCG L  A  L  ++ +K  VS++++I  Y 
Sbjct: 331 VGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYS 390

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             GFV +  DL + M       W                      M+   +  N VTI +
Sbjct: 391 REGFVFETFDLLRKM-------W----------------------MEEELMEVNEVTILN 421

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +       S L   + +HGY++++ +     +  A I  YAK G L  A+ VF     +S
Sbjct: 422 LLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS 481

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  W A+I  +A +GD  KA+  + EM   GI PD  +  ++L AC   GL+    +I
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEI 539



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 31/284 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++  WN++++GY +   Y+E    F E+++    +PD  T   +++AC    DI  G  
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH   ++  + MDL++ NA+I +Y KCG LD A  L D+M +++ +S++++I G+  +GF
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGF 291

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A   F+ +   G                              G+ P+  T+ ++  +
Sbjct: 292 WLEAYRAFRSLLESG-----------------------------DGLIPDVATMVTLLPV 322

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   N+  G  IHG AVK      + V  A+ID Y+K G L  A  +F + + +S++ W
Sbjct: 323 CSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSW 382

Query: 244 TAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSAC 285
            ++I AY+  G   +   L  +M      ++ + VT   +L AC
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 142/316 (44%), Gaps = 37/316 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +LQ CGQ  ++  G ++   + + S    D  +   LI MY+ CG    +R + D + +K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREM 165
           +                      LFQ         WNA++SG V+N  + EA+   +  +
Sbjct: 173 N----------------------LFQ---------WNALVSGYVRNELYDEAIHTFLELI 201

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +  +P+  T   +    +   ++  GK +HG AVK     +++V  A+I  Y K GFL
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN--NGIQPDPVTFTAVLS 283
             A  +FD+   ++LI W ++I  ++ +G   +A   F  +L   +G+ PD  T   +L 
Sbjct: 262 DEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            C+  G VD    + + M+ + G+   +     ++ + S+   +SEA     K+  K S 
Sbjct: 322 VCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK-SV 379

Query: 344 KVWGALLYGASISGDV 359
             W +++   S  G V
Sbjct: 380 VSWNSMIGAYSREGFV 395



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 99/217 (45%), Gaps = 13/217 (5%)

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI-HGYAV 201
           N  +  L +  ++ A  DL +  +A G+         +      + N++ G+++     V
Sbjct: 85  NGALDFLQRAWKNNAGYDLAQRKEAMGM---------LLQKCGQYKNVEIGRKLDEMLCV 135

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            +++  +  + T +I  Y+  G+   ++ VFDR   ++L  W A++S Y  +    +A+ 
Sbjct: 136 SSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIH 195

Query: 262 LFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            F E+++    QPD  TF  ++ AC     +     + + M+ + G+   +     M+ +
Sbjct: 196 TFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV-HGMAVKMGLIMDLFVGNAMIAL 254

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             +   + EA E   KMP + +   W +L+ G S +G
Sbjct: 255 YGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENG 290


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/470 (35%), Positives = 271/470 (57%), Gaps = 15/470 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+  +MI GY Q G   E + LF EM   P  R + V+  +++    Q+  +  
Sbjct: 248 MPEKDVVTRTNMIGGYCQVGRLVEARMLFDEM---P--RRNVVSWTTMITGYVQNQQVDI 302

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++   + E +     W   A++  Y  CG LD A  L + M  K  V+ +A+I  +  
Sbjct: 303 ARKLFEVMPEKNEVS--W--TAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQ 358

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V KA  +F  M+     TW+A+I    +       L+L R MQ  G+RPN  ++ S+
Sbjct: 359 NGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISV 418

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+ +  +NL  G+EIH   V++++D ++YVA+ ++  Y K G L  A++VFDRF  + +
Sbjct: 419 LSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDV 478

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W +II+ YA HG   +A+ +F++M  +GI PD VTF  VLSAC+++G V K  +IFN+
Sbjct: 479 VMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNS 538

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++  +EHYACMV +L RA +++EA + + KMP++  A +WGALL        ++
Sbjct: 539 METKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLD 598

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L  +EP+N G +I+++N+Y+  GRWD+   +R  M++  ++K PG SWI   
Sbjct: 599 LAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVE 658

Query: 421 GGLQSFVAKDTSG-DKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
             +  F   D+SG  +  +I  ILE L GL+RE GY      +L +V+EE
Sbjct: 659 KKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEE 708



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 165/359 (45%), Gaps = 23/359 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R+ +SWN +++GY   G   E + +F  M    V+    +    V +     ++ +F
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLF 214

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                  V+        W    ++G   + G +D A  L D M +KD V+ + +I GY  
Sbjct: 215 WQMPEKNVVS-------W--TVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQ 265

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A  LF  M R  + +W  +I+G VQN +    +D+ R++       N V+ +++
Sbjct: 266 VGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQ----VDIARKLFEVMPEKNEVSWTAM 321

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
              +++   L    E+ +   +K     ++    A+I  + + G +  A++VFD+ + + 
Sbjct: 322 LKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILCFGQNGEVPKARQVFDQMREKD 376

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
              W+A+I  Y   G    A+ LF  M   GI+P+  +  +VLS CA    +D   +I  
Sbjct: 377 EGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHA 436

Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +   Q+ +   V   + ++ +  +   +++A +   +  VK    +W +++ G +  G
Sbjct: 437 QLVRSQFDLDVYVA--SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQHG 492



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 153/328 (46%), Gaps = 21/328 (6%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N+LI  Y++ G ++ AR + DEM DK+ +S+++I++GY  +   ++A ++F  M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN ++SG + N     +++  RE+       N V+ +++   +     +   + +    
Sbjct: 162 SWNGLVSGYINN----GMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
                ++N+   T ++    + G +  A R+FD    + ++  T +I  Y   G   +A 
Sbjct: 218 P----EKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEAR 273

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            LF+EM    +    V++T +++    +  VD A  +F  M  +  +      +  M+  
Sbjct: 274 MLFDEMPRRNV----VSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
            +   R+ EA+E  + MP+K S     A++     +G+V   + V D + E   ++ G +
Sbjct: 325 YTNCGRLDEASELFNAMPIK-SVVACNAMILCFGQNGEVPKARQVFDQMRE---KDEGTW 380

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGL 408
             M  +Y + G   +A  +   M+  G+
Sbjct: 381 SAMIKVYERKGLELDALELFRMMQREGI 408



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 63/333 (18%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           +S +++I+ Y   G +EKA  +F  M+   + +WN++++G  QN R +   ++  +M   
Sbjct: 99  ISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS-- 156

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
                                                +RN      ++  Y   G ++ A
Sbjct: 157 -------------------------------------ERNTISWNGLVSGYINNGMINEA 179

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           + VFDR   R+++ WTA++  Y   G  S+A +LF +M    +    V++T +L      
Sbjct: 180 REVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV----VSWTVMLGGLLQE 235

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G +D+A  +F+ M      +  V     M+G   +  R+ EA     +MP + +   W  
Sbjct: 236 GRIDEACRLFDMMP-----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMP-RRNVVSWTT 289

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           ++ G   +  V++ +     LFE+ PE N  ++  M   Y+  GR DEA  +   M    
Sbjct: 290 MITGYVQNQQVDIAR----KLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM---- 341

Query: 408 LAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
               P +S + C+  +  F  ++    K+ Q++
Sbjct: 342 ----PIKSVVACNAMILCF-GQNGEVPKARQVF 369



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 62/347 (17%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I+S NS+I  YS+ G  E+ + +F EM +  ++  + +          Q +  +F     
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
              I        W  N L+  Y   G ++ AR + D M +++ VS++A++ GY+  G + 
Sbjct: 158 RNTIS-------W--NGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMIS 208

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +A  LF  M    + +W  ++ GL+Q  R                      I     LF 
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGR----------------------IDEACRLFD 246

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                               ++++   T +I  Y + G L  A+ +FD    R+++ WT 
Sbjct: 247 MMP-----------------EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTT 289

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I+ Y  +     A  LF  M     + + V++TA+L    + G +D+A ++FNAM    
Sbjct: 290 MITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAM---- 341

Query: 306 GIQPSVEHYAC--MVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
              P     AC  M+    +   + +A +   +M  K     W A++
Sbjct: 342 ---PIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEG-TWSAMI 384


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 258/452 (57%), Gaps = 32/452 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+    +MI+GY   G   +    FR ++   ++  + +T+ SVL AC   + +  G E+
Sbjct: 379 DVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVT-NSLTMASVLPACAAVAALKPGKEL 437

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++  ++  + + +A+  MYAKCG LD A      MSD+D V               
Sbjct: 438 HCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSV--------------- 482

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++IS   QN + E  +DL R+M  SG + ++V++SS  S  
Sbjct: 483 ----------------CWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAA 526

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           ++   L  GKE+HGY ++N +  + +VA+ +ID Y+K G L  A  VF+   G++ + W 
Sbjct: 527 ANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWN 586

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II+AY  HG   + + L++EML  GI PD VTF  ++SAC H+GLVD+    F+ M+ +
Sbjct: 587 SIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTRE 646

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI   +EHYACMV +  RA R+ EA + +  MP  P A VWG LL    + G+VEL K 
Sbjct: 647 YGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKL 706

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              HL E++P+N+G Y++++N+++ AG W    +VR  MKE G+ KIPG SWI+ +GG  
Sbjct: 707 ASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTH 766

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            F A D +  +S +IYLIL+ LL  +R++GYV
Sbjct: 767 MFSAADGNHPESVEIYLILKSLLLELRKQGYV 798



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 168/358 (46%), Gaps = 34/358 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD + WN M+ GY + G ++     F EM  S  +  + VT   +L  C    +   G +
Sbjct: 176 RDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMV-NSVTYTCILSICATRGNFCAGTQ 234

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI S  + D  + N L+ MY+KCG+L YAR L + M   D V              
Sbjct: 235 LHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTV-------------- 280

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            TWN +I+G VQN   +    L   M ++GV+P++VT +S    
Sbjct: 281 -----------------TWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPS 323

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +L+  KE+H Y V++R   ++Y+ +A+ID Y K G +  A+++F +     + + 
Sbjct: 324 ILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVC 383

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+IS Y  HG    A++ F  ++  G+  + +T  +VL ACA    +    ++   +  
Sbjct: 384 TAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILK 443

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  ++  V   + +  + ++  R+  A EF  +M  + S   W +++   S +G  E+
Sbjct: 444 KR-LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSV-CWNSMISSFSQNGKPEI 499



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 142/276 (51%), Gaps = 32/276 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D V+WN +IAGY Q GF +E   LF  M+++ V +PD VT  S L +  +S  +  
Sbjct: 274 MPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGV-KPDSVTFASFLPSILESGSLRH 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH++++   +  D+++ +ALI +Y K G ++ AR +  +    D    +A+ISGY++
Sbjct: 333 CKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVL 392

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A++ F+ + + G+ T                               N++T++S+
Sbjct: 393 HGLNIDAINTFRWLIQEGMVT-------------------------------NSLTMASV 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + LK GKE+H + +K R +  + V +AI D YAK G L  A   F R   R  
Sbjct: 422 LPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDS 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
           + W ++IS+++ +G    A+ LF +M  +G + D V
Sbjct: 482 VCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSV 517



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 32/286 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R  + WN MI G    G+++     + +ML S V  PD  T   V++ACG  +++   M 
Sbjct: 75  RYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV-SPDKYTFPYVIKACGGLNNVPLCMV 133

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+        +DL+  +ALI +YA  G +  AR + DE+  +D +              
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTI-------------- 179

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN ++ G V++   +  +    EM+ S    N+VT + I S+
Sbjct: 180 -----------------LWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSI 222

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   N   G ++HG  + + ++ +  VA  ++  Y+K G L  A+++F+       + W
Sbjct: 223 CATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTW 282

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             +I+ Y  +G   +A  LFN M++ G++PD VTF + L +   SG
Sbjct: 283 NGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 328



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 4/242 (1%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           S ++  Y++ G    A +LF  ++      WN +I GL      +  L    +M  S V 
Sbjct: 50  SRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVS 109

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T   +       +N+     +H  A    +  +++  +A+I  YA  G++  A+RV
Sbjct: 110 PDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRV 169

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FD    R  I+W  ++  Y   GD   A+  F EM  +    + VT+T +LS CA  G  
Sbjct: 170 FDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNF 229

Query: 292 DKAWDIFNAMSGQ-YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
                +   + G  +   P V +   +V + S+   +  A +  + MP +     W  L+
Sbjct: 230 CAGTQLHGLVIGSGFEFDPQVAN--TLVAMYSKCGNLLYARKLFNTMP-QTDTVTWNGLI 286

Query: 351 YG 352
            G
Sbjct: 287 AG 288



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++ VSWNS+IA Y   G   EC  L+ EML + +  PD VT + ++ ACG +  +  
Sbjct: 577 MDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGI-HPDHVTFLVIISACGHAGLVDE 635

Query: 61  GME-VHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+   H    E  I  +M+ + C  ++ +Y + G +  A   +  M    D   +  ++ 
Sbjct: 636 GIHYFHCMTREYGIGARMEHYAC--MVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLG 693

Query: 117 GYMVHGFVEKA 127
              +HG VE A
Sbjct: 694 ACRLHGNVELA 704



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/238 (18%), Positives = 94/238 (39%), Gaps = 5/238 (2%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S+F   S  S ++  +++H   +          ++ ++  Y   G    A  +F   +
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R  + W  +I      G    A+  + +ML + + PD  TF  V+ AC     V     
Sbjct: 74  LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCM- 132

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           + +  +   G    +   + ++ + +    I +A     ++P++ +  +W  +L G   S
Sbjct: 133 VVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTI-LWNVMLRGYVKS 191

Query: 357 GDVE--LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
           GD +  +G F C+        N+  Y  + ++ +  G +    ++   +  SG    P
Sbjct: 192 GDFDNAIGTF-CEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDP 248


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 255/441 (57%), Gaps = 33/441 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++VSWNSMIAGYS  G  + C  LFR M +   +RP   T+ S+L AC +S ++  
Sbjct: 268 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM-DEEGIRPTLTTLSSILMACSRSVNLQL 326

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++I + ++ D+++ ++LI +Y KCG++  A                        
Sbjct: 327 GKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE----------------------- 363

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   ++FQ M +  + +WN +ISG V+   +   L +  +M+ +GV+P+A+T +S+
Sbjct: 364 --------NVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSV 415

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  + L+ GKEIH + ++++ + N  V  A++D YAK G +  A  +F++   R  
Sbjct: 416 LPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDF 475

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+AY +HG A +A+ LF +M  +  +PD VTF A+LSAC+H+GLVD+    FN 
Sbjct: 476 VSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQ 535

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDV 359
           M  +YG +P+VEHY+C++ +L R  R+ EA E + + P ++    +   L     +   +
Sbjct: 536 MIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKL 595

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +LG+ +   L E +P++   YII++N+Y+   +WDE  +VR ++KE GL K PG SWIE 
Sbjct: 596 DLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655

Query: 420 SGGLQSFVAKDTSGDKSEQIY 440
              +  FV +D S  +++ IY
Sbjct: 656 GKRIHPFVVEDKSHPQADMIY 676



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 209/437 (47%), Gaps = 69/437 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI  WN ++A  ++   + E   +F  +L+ P L+PD  T  SVL+AC     + +G  V
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+S   MD+ + ++ +GMYAKC   + A  L DEM ++D                 
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERD----------------- 171

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                         +++WN VIS   Q+ + E  L+L  EM+ SG +P++VT++++ S  
Sbjct: 172 --------------VASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 217

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L+ GKEIH   V++ +  + +V++A++D Y K G L  A+ VF++ + ++++ W 
Sbjct: 218 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWN 277

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA------------------ 286
           ++I+ Y+  GD+   + LF  M   GI+P   T +++L AC+                  
Sbjct: 278 SMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN 337

Query: 287 --------HSGLVDKAWDIFNAMSGQYGIQ----PSVEHYACMVGVLSRARRISEATEFV 334
                   +S L+D  +   N  S +   Q     +V  +  M+    +     EA    
Sbjct: 338 RVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIF 397

Query: 335 SKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA---NLYS 388
           + M    VKP A  + ++L   S    +E GK +  H F IE +   N ++M    ++Y+
Sbjct: 398 TDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEI--HNFIIESKLEINEVVMGALLDMYA 455

Query: 389 QAGRWDEADRVREQMKE 405
           + G  DEA  +  Q+ E
Sbjct: 456 KCGAVDEALHIFNQLPE 472


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 255/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN++I  ++Q GF  +   LF  M++S  + PD  T+ S+L AC +   +  
Sbjct: 462 MEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSG-MDPDRFTIGSLLLACARLKFLRC 520

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H F++ + +++D +I  +L+ +Y +C S+   + + D+M +K              
Sbjct: 521 GKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKS------------- 567

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L  WN +I+G  QN      LD  R+M + G++P  + ++ +
Sbjct: 568 ------------------LVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGV 609

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S L+ GKE+H +A+K     + +V  A+ID YAK G +  +Q +FDR   +  
Sbjct: 610 LGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDE 669

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            +W  II+ Y  HG   KA+ LF  M N G +PD  TF  VL AC H+GLV +       
Sbjct: 670 AVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQ 729

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P +EHYAC+V +L RA +++EA + V++MP +P + +W +LL      GD+E
Sbjct: 730 MQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLE 789

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V   L E+EP    NY++++NLY+  G+WDE  +VR++MKE+GL K  G SWIE  
Sbjct: 790 IGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIG 849

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           G +  F+  D S  +S++I     +L   + + GY      +L E+EEE
Sbjct: 850 GMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEE 898



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 32/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--LRPDGVTVVSVLQACGQSSDI 58
           M  R++VSWNS++   S+ G + EC  +F+ +L S    L PD  T+V+V+ AC    ++
Sbjct: 256 MRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV 315

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             GM VH    +  I  ++ + N+L+ MY+KCG L  ARAL D    K+ VS++ II GY
Sbjct: 316 RMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGY 375

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G      +L Q M+R                                 VR N VT+ 
Sbjct: 376 SKEGDFRGVFELLQEMQRE------------------------------EKVRVNEVTVL 405

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++    S    L   KEIHGYA ++ + ++  VA A +  YAK   L  A+RVF   +G+
Sbjct: 406 NVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGK 465

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           ++  W A+I A+A +G   K++ LF  M+++G+ PD  T  ++L ACA
Sbjct: 466 TVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACA 513



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 140/284 (49%), Gaps = 31/284 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSWN++I GYS+ G +     L +EM     +R + VTV++VL AC     ++   E
Sbjct: 363 KNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKE 422

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +        D  + NA +  YAKC SLD A  +   M  K   S++A+I  +  +GF
Sbjct: 423 IHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGF 482

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             K++DLF V                               M  SG+ P+  TI S+   
Sbjct: 483 PGKSLDLFLV-------------------------------MMDSGMDPDRFTIGSLLLA 511

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ GKEIHG+ ++N  + + ++  +++  Y +   +   + +FD+ + +SL+ W
Sbjct: 512 CARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCW 571

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             +I+ ++ +    +A+  F +ML+ GI+P  +  T VL AC+ 
Sbjct: 572 NVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQ 615



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 35/288 (12%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D+  +N++++GYS+   + +  +LF E+L++  L PD  T+  V +AC   +D+  G 
Sbjct: 156 EKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGE 215

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH   +++    D ++ NALI MY KCG ++ A                          
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESA-------------------------- 249

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM---QASGVRPNAVTISS 179
                + +F+ M+   L +WN+V+    +N        + + +   +  G+ P+  T+ +
Sbjct: 250 -----VKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    +    ++ G  +HG A K      + V  +++D Y+K G+L  A+ +FD   G++
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKN 364

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACA 286
           ++ W  II  Y+  GD      L  EM     ++ + VT   VL AC+
Sbjct: 365 VVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 36/315 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +L+ACG   +I  G +VH  V  SH ++ D+ +   +I MY+ CGS   +R + D   +K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D   Y+A++SGY  +     A+ LF                           L+L   + 
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLF---------------------------LEL---LS 187

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           A+ + P+  T+  +    +  ++++ G+ +H  A+K     + +V  A+I  Y K GF+ 
Sbjct: 188 ATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVE 247

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML---NNGIQPDPVTFTAVLS 283
            A +VF+  + R+L+ W +++ A + +G   +   +F  +L     G+ PD  T   V+ 
Sbjct: 248 SAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIP 307

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           ACA  G V     + + ++ + GI   V     +V + S+   + EA      M    + 
Sbjct: 308 ACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD-MNGGKNV 365

Query: 344 KVWGALLYGASISGD 358
             W  +++G S  GD
Sbjct: 366 VSWNTIIWGYSKEGD 380


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 266/488 (54%), Gaps = 48/488 (9%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +K+++V+W +M+ GY +     + + LF EM N  V     V+  +++    Q+  I   
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV-----VSWNTMIDGYAQNGRIDSA 180

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           M    ++ E   + ++   N ++ M A+CG ++ AR L D M ++D +S++A     M+ 
Sbjct: 181 M----YLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTA-----MIA 231

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQN----------------------------- 152
           G +++A+DLF+ M    L +WN +I+GL+QN                             
Sbjct: 232 GLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCV 291

Query: 153 ---NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
                 EA+    R +  +G +PN  T  S+    S+ + L  G+++H    K  Y  + 
Sbjct: 292 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDST 351

Query: 210 YVATAIIDTYAKTGFLHGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           +V +A+I+ Y+K G L  A+++FD      R L+ W  II+AYA HG   +A++ F EM 
Sbjct: 352 FVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMR 411

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            +G +PD VT+  +LSAC+H+GLV++    F+ +     I    +HYAC+V +  RA R+
Sbjct: 412 KSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRL 471

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387
            EA  F+ ++  KPSA+VWGALL G ++  +V++GK     L E+EPEN G Y++++N+Y
Sbjct: 472 KEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIY 531

Query: 388 SQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLL 447
           +  G+W EA RVR +MK+ GL K PG SWIE    +  FV  D S  +S+ IY +L  L 
Sbjct: 532 ASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLH 591

Query: 448 GLMREEGY 455
             M++ GY
Sbjct: 592 SKMKKAGY 599



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 166/410 (40%), Gaps = 66/410 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++   N MI   S+ G   E + LF EM    V+     TV+S    CG         E 
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVI--TWTTVISGYIKCGMIE------EA 117

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
                    K ++    A++G Y +   +  A  L +EM +K+ VS++ +I GY  +G +
Sbjct: 118 RRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRI 177

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + AM LF+ M    + +WN V+S L Q  R E    L   M                   
Sbjct: 178 DSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP------------------ 219

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                                +R++   TA+I      G L  A  +F+R   R L  W 
Sbjct: 220 ---------------------ERDVISWTAMI-----AGLLDEALDLFERMPERDLPSWN 253

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I+    +GD  +A  LFNEM    +    +++T +++ C   G  ++A  IF+ M   
Sbjct: 254 TMITGLIQNGDLRRARKLFNEMPKKNV----ISWTTMITGCVQEGESEEALKIFSRMLST 309

Query: 305 YGIQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            G +P+   +  ++G  S    + E     + +SK   + S  V  AL+   S  G  EL
Sbjct: 310 NGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG--EL 367

Query: 362 G---KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G   K   D +       + N II A  Y+  G   EA    ++M++SG 
Sbjct: 368 GTARKMFDDGMTSQRDLVSWNGIIAA--YAHHGYGKEAINFFKEMRKSGF 415



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 17/203 (8%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D N+     +I   +K G +  A+R+FD  +   +I WT +IS Y   G   +A  LF+ 
Sbjct: 64  DGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDR 123

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           +     + + VT+TA++     S  +  A  +FN M  +     +V  +  M+   ++  
Sbjct: 124 V---DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK-----NVVSWNTMIDGYAQNG 175

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           RI  A     KMP + +   W  ++   +  G +E  +     LF+  PE      +++ 
Sbjct: 176 RIDSAMYLFEKMPER-NVVSWNTVMSMLAQCGRIEEAR----RLFDRMPERD----VISW 226

Query: 386 LYSQAGRWDEADRVREQMKESGL 408
               AG  DEA  + E+M E  L
Sbjct: 227 TAMIAGLLDEALDLFERMPERDL 249


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 254/444 (57%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++  +NS+I  Y+    Y +   +++++L      PD  T   + ++C        
Sbjct: 68  VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYL 127

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  + +   +  +   NALI MY K   L  A  + DEM ++D +S+++++SGY  
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++KA  LF +M    + +W A+ISG      +   +D  REMQ +G+ P+ +++ S+
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+ GK IH YA +  + +   V  A+I+ Y+K G +  A ++F + +G+ +
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+ +IS YA HG+A  A+  FNEM    ++P+ +TF  +LSAC+H G+  +    F+ 
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I+P +EHY C++ VL+RA ++  A E    MP+KP +K+WG+LL      G+++
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +     DHL E+EPE+ GNY+++AN+Y+  G+W++  R+R+ ++   + K PG S IE +
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487

Query: 421 GGLQSFVAKDTSGDKSEQIYLILE 444
             +Q FV+ D S     +I ++L+
Sbjct: 488 NIVQEFVSGDNSKPFWTEISIVLQ 511


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 260/455 (57%), Gaps = 32/455 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +K DIV + +MI+GY   G  ++   +FR +L   ++ P+ +T  S+L AC   + I  G
Sbjct: 274 TKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMI-PNALTFSSILPACAGLAAIKLG 332

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H ++I++ ++    + +A++ MYAKCG LD A  +   +S KD +            
Sbjct: 333 RELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAI------------ 380

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WN++I+   Q+ + E  + L R+M   GV+ + VT+S+  
Sbjct: 381 -------------------CWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAAL 421

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  ++   L  GKEIHG+ +K  ++ +++  +A+I+ YAK G L+ A+ VF+  + ++ +
Sbjct: 422 SACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEV 481

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W +II+AY  HG  + +++LF+ ML  GIQPD +TF  +LS+C H+G V+     F  M
Sbjct: 482 AWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCM 541

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + +YGI   +EHYACM  +  RA  + EA E ++ MP  P+A VWG LL    + G+VEL
Sbjct: 542 TEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVEL 601

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    +L ++EP+N+G Y+++ ++ + AG+W    +++  MKE G+ K+PG SWIE + 
Sbjct: 602 AEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNN 661

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               F A D S  +S QIY +L+ LL  +R+ GYV
Sbjct: 662 TTCVFFAADGSHPESPQIYSLLKSLLLELRKVGYV 696



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 203/449 (45%), Gaps = 69/449 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D+V WN MI GY Q GF ++   LF EM+++ + +PD +T  S L +  +SS +  
Sbjct: 172 MPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGI-KPDSITFTSFLPSLAESSSLKQ 230

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H +++   + +D+++ +ALI +Y KC               +D V           
Sbjct: 231 IKEIHGYIVRHGVILDVYLNSALIDLYFKC---------------RDAV----------- 264

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A  +F +  +  +  + A+ISG V N  ++  L++ R +    + PNA+T SSI
Sbjct: 265 -----MACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSI 319

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + +K G+E+HGY +KN  +    V +AI++ YAK G L  A  +F R   +  
Sbjct: 320 LPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDA 379

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W +II++++  G   +A+ LF +M   G++ D VT +A LSACA+   +    +I   
Sbjct: 380 ICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGF 439

Query: 301 M------SGQYGIQPSVEHYACMVGVLSRARRI-------------------------SE 329
           M      S  + +   +  YA   G L+ AR +                         ++
Sbjct: 440 MIKGAFESDLFDMSALINMYA-KCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLAD 498

Query: 330 ATEFVSKM---PVKPSAKVWGALLYGASISGDVELG--KFVCDHLFEIEPENTGNYIIMA 384
           +      M    ++P    +  +L     +G VE G   F C       P    +Y  MA
Sbjct: 499 SLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMA 558

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPG 413
           +L+ +AG  DEA  V   M     A + G
Sbjct: 559 DLFGRAGHLDEAFEVITSMPFPPAASVWG 587



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V WN MI GY Q G  +    LF++M++S   +PD VT   VL      + + +
Sbjct: 71  MIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEA-KPDSVTFACVLSISCSEAMVEY 129

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V+ S +     + N L+ +Y+K   L  AR L D M   D V ++ +I GY+ 
Sbjct: 130 GRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQ 189

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF++ A  LF                                EM ++G++P+++T +S 
Sbjct: 190 NGFMDDASMLFN-------------------------------EMISAGIKPDSITFTSF 218

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+LK  KEIHGY V++    ++Y+ +A+ID Y K      A ++F+      +
Sbjct: 219 LPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDI 278

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +I+TA+IS Y  +G    A+ +F  +L   + P+ +TF+++L ACA
Sbjct: 279 VIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACA 324



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 124/249 (49%), Gaps = 31/249 (12%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD  T   V++ C   +++  G  + + ++E    +D+++ ++LI +YA  G ++ AR  
Sbjct: 8   PDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRF 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+M DKD V                                WN +I+G VQ    ++ +
Sbjct: 68  FDKMIDKDCV-------------------------------LWNVMINGYVQCGESDSAI 96

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
            L ++M +S  +P++VT + + S+    + ++ G+++HG  V++  D    V   ++  Y
Sbjct: 97  KLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVY 156

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           +K   L  A+++FD      L++W  +I  Y  +G    A  LFNEM++ GI+PD +TFT
Sbjct: 157 SKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFT 216

Query: 280 AVLSACAHS 288
           + L + A S
Sbjct: 217 SFLPSLAES 225



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   GV P+  T   +    +  +N++ GK I    ++  +D +++VA+++I  YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A+R FD+   +  ++W  +I+ Y   G++  A+ LF +M+++  +PD VTF  VLS 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQ--PSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
                +V+    + + +  + G+   P V +   +V V S+ R++ +A +    MP +  
Sbjct: 121 SCSEAMVEYGRQL-HGLVVRSGLDFVPLVGN--TLVTVYSKGRQLGDARKLFDMMP-QID 176

Query: 343 AKVWGALLYG 352
             VW  ++ G
Sbjct: 177 LVVWNRMIGG 186


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 266/471 (56%), Gaps = 18/471 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN+MI+GY+Q G   + K LF E   SP+   D  T  +++    Q+     
Sbjct: 227 MPVRDVISWNTMISGYAQVGDLSQAKRLFNE---SPI--RDVFTWTAMVSGYVQN----- 276

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           GM  E   +  E  +K ++   NA++  Y +   +  A  L + M  ++  S++ +I+GY
Sbjct: 277 GMVDEARKYFDEMPVKNEISY-NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGY 335

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G + +A  LF +M +    +W A+ISG  QN  +E  L++  EM+  G   N  T S
Sbjct: 336 GQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFS 395

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
              S  +  + L+ GK++HG  VK  ++   +V  A++  Y K G    A  VF+  + +
Sbjct: 396 CALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEK 455

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W  +I+ YA HG   +A+ LF  M   G++PD +T   VLSAC+HSGL+D+  + F
Sbjct: 456 DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYF 515

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   Y ++P+ +HY CM+ +L RA R+ EA   +  MP  P A  WGALL  + I G+
Sbjct: 516 YSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGN 575

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG+   + +F++EP+N+G Y++++NLY+ +GRW +  ++R +M+E+G+ K+ G SW+E
Sbjct: 576 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVE 635

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F   D    + ++IY  LE L   MR EGYV     +L +VEEE
Sbjct: 636 VQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 686



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 190/419 (45%), Gaps = 69/419 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DIV+WN  I+ + + G    C +  R   + P  R   V+  +++    +++      ++
Sbjct: 45  DIVTWNKAISSHMRNG---HCDSALRVFNSMP--RRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            + + E     DL+  N ++  Y +   L  A  L D M  KD VS++A++SGY  +GFV
Sbjct: 100 FDKMPER----DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A ++F  M      +WN +++  V N R    L   R +  S          S + L 
Sbjct: 156 DEAREVFNKMPHRNSISWNGLLAAYVHNGR----LKEARRLFES---------QSNWELI 202

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S ++ L GG                         Y K   L  A+++FDR   R +I W 
Sbjct: 203 S-WNCLMGG-------------------------YVKRNMLGDARQLFDRMPVRDVISWN 236

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQP--DPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
            +IS YA  GD S+A  LFNE       P  D  T+TA++S    +G+VD+A   F+ M 
Sbjct: 237 TMISGYAQVGDLSQAKRLFNE------SPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
               ++  + + A + G + + +++  A E    MP + +   W  ++ G   +G +   
Sbjct: 291 ----VKNEISYNAMLAGYV-QYKKMVIAGELFEAMPCR-NISSWNTMITGYGQNGGIAQA 344

Query: 363 KFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +     LF++ P+ +  ++  + + Y+Q G ++EA  +  +MK  G  +   RS   C+
Sbjct: 345 R----KLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG--ESSNRSTFSCA 397



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 131/303 (43%), Gaps = 54/303 (17%)

Query: 102 EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           +  D D V+++  IS +M +G  + A+ +F  M R    ++NA+ISG ++N +     DL
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
             +M                                        +R+++    ++  Y +
Sbjct: 100 FDKMP---------------------------------------ERDLFSWNVMLTGYVR 120

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
              L  A ++FD    + ++ W A++S YA +G   +A  +FN+M +     + +++  +
Sbjct: 121 NRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGL 176

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           L+A  H+G + +A  +F + S    I      + C++G   +   + +A +   +MPV+ 
Sbjct: 177 LAAYVHNGRLKEARRLFESQSNWELIS-----WNCLMGGYVKRNMLGDARQLFDRMPVRD 231

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVR 400
               W  ++ G +  GD+   K     LF   P  +   +  M + Y Q G  DEA +  
Sbjct: 232 VIS-WNTMISGYAQVGDLSQAK----RLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYF 286

Query: 401 EQM 403
           ++M
Sbjct: 287 DEM 289


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 268/507 (52%), Gaps = 41/507 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VS+N+ IAG+S     +E   LF+ M       P   T+VS+L A  Q  D+ +
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRM-QREGFEPTEYTIVSILNASAQLLDLRY 173

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +I  +   +++I NAL  MYAKCG ++ AR L D ++ K+ VS++ +ISGY  
Sbjct: 174 GKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK 233

Query: 121 HGFVEKAMDLFQVMKRPG-------LST----------------------------WNAV 145
           +G  EK + L   M+  G       +ST                            W A+
Sbjct: 234 NGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAM 293

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           + G  +N R E  L L  EM    + P++ T+SS+ S  +  ++L  G+ +HG ++    
Sbjct: 294 MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGL 353

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           + N+ V++A+ID Y+K GF+  A+ VF+    R+++ W A+I   A +G    A+ LF  
Sbjct: 354 NNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFEN 413

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           ML    +PD VTF  +LSAC H   +++  + F+++S Q+G+ P+++HYACMV +L R  
Sbjct: 414 MLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTG 473

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           RI +A   +  M   P   +W  LL   S  GD+   +    HLFE++P     YI+++N
Sbjct: 474 RIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSN 533

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           +Y+  GRW +   VR  MK   + K  G SWIE    +  F ++D +  +SE IY  L  
Sbjct: 534 MYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNM 593

Query: 446 LLGLMREEGY-----VLLDEVEEESAY 467
           L+G ++EEG+     ++L +V E+  +
Sbjct: 594 LIGKLQEEGFTPNTNLVLHDVGEDEKF 620



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%)

Query: 69  IESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           +E H+    D ++ N L+ +YAK G L  A+ L D+M  +D  S++A++S Y   G ++ 
Sbjct: 48  MEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQN 107

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
               F  M      ++N  I+G   N+  +  L+L + MQ  G  P   TI SI +  + 
Sbjct: 108 LKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQ 167

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             +L+ GK+IHG  +   +  N+++  A+ D YAK G +  A+ +FD    ++L+ W  +
Sbjct: 168 LLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           IS YA +G   K + L ++M  +G  PD VT + +++A    G VD+A  +F
Sbjct: 228 ISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 263/457 (57%), Gaps = 37/457 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SKR++  WN MI GY+  G YE   +L+ +M +  ++ PD  T   VL+AC   S +  
Sbjct: 62  ISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLV-PDKFTFPFVLKACSALSAMEE 120

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI S ++ D+++  ALI MYAKCG                             
Sbjct: 121 GKKIHKDVIRSGLESDVFVGAALIDMYAKCGC---------------------------- 152

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A  +F  +    +  WN++++   QN + +  L L R M  +G++P   T   +
Sbjct: 153 ---VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTF--V 207

Query: 181 FSLFSHFSN--LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S+ +   N  L  GKE+HGY+ ++ ++ N  V TA++D YAK+G ++ A+ +F+  + +
Sbjct: 208 ISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEK 267

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+I+ YA HG A++A+ LF EM    + PD +TF  VL+AC+H GL+++    F
Sbjct: 268 RVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHF 326

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   + I P+V+HY CM+ +L    R+ EA + + +M V+P A VWGALL+   I G+
Sbjct: 327 RSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGN 386

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+G+   + L E+EP++ GNY+I++N+Y+QAG+WD   R+R+ M   GL K    SWIE
Sbjct: 387 VEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIE 446

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
               + +F+++DTS  KSE IY  L+R   LM+E GY
Sbjct: 447 VGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGY 483



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 170/395 (43%), Gaps = 71/395 (17%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+LQ+C     I  G ++H  + +  I  +  +   L+ +Y  C SL  A  L D +S +
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           +                               L  WN +I G   N  +E  + L  +M+
Sbjct: 66  N-------------------------------LFLWNVMIRGYAWNGPYELAISLYYQMR 94

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G+ P+  T   +    S  S ++ GK+IH   +++  + +++V  A+ID YAK G + 
Sbjct: 95  DYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVE 154

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A++VFD+   R ++ W ++++ Y+ +G   ++++L   M  NG++P   TF   ++A A
Sbjct: 155 SARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASA 214

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
            +GL+ +  ++ +  S ++G + + +    ++ + +++  ++ A      +  K     W
Sbjct: 215 DNGLLPQGKEL-HGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVS-W 272

Query: 347 GALLYGASISGDVE---------LGKFVCDHL---------------------------- 369
            A++ G ++ G             GK + DH+                            
Sbjct: 273 NAMITGYAMHGHANEALDLFKEMKGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISD 332

Query: 370 FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           F I P    +Y  M +L    GR +EA ++  +M+
Sbjct: 333 FNIWP-TVQHYTCMIDLLGHCGRLEEAYKLIMEMR 366


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 257/455 (56%), Gaps = 1/455 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RD+  +++++A  S     E    L R ML+   LRPD   + S+  A G+   +  G 
Sbjct: 64  RRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGR 123

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H     S    D  + ++LI MY KCG    AR + D +  K+ V ++A+ISGY  +G
Sbjct: 124 QLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNG 183

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
              +A+DLFQ M   GL TW A+ISG V+   +   + L  EM+   +R  +A  ++++ 
Sbjct: 184 CTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVI 243

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +  + L  G+++HG+ ++  +  ++ V  A++D Y+K   +H A+ VF+    R +I
Sbjct: 244 GGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVI 303

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT I+   A HG A +  +L+N ML  G++P+ VTF  ++ AC+H+GLV K   +F++M
Sbjct: 304 SWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSM 363

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YG++P V+HY C + +LSR+  +SEA + ++ MP +P    WGALL       D ++
Sbjct: 364 KREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQM 423

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
              V D+L E+ P++   YI+++N+Y+   +WD   +VR+ M E  + K+PG SW+E   
Sbjct: 424 CLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGR 483

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + F A +   D  E+I   LE L+  MR+ GYV
Sbjct: 484 ESRIFHAGEVPLDVGEEITCFLEELVSEMRKRGYV 518



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 129/300 (43%), Gaps = 42/300 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M    + +W ++I+G+ + G Y     LF EM    +   D   + +V+      + +V 
Sbjct: 195 MPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVL 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H FV+       + + NAL+ MY+KC  +  AR + + ++ +D +S++ I+ G   
Sbjct: 255 GRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQ 314

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG                               R E V  L   M  +G++PN VT   +
Sbjct: 315 HG-------------------------------RAEEVFALYNRMLLAGMKPNEVTFVGL 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR 238
               SH   ++ G+++   ++K  Y     V   T  +D  +++G+L  A+++       
Sbjct: 344 IYACSHAGLVQKGRQLFD-SMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYE 402

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWD 296
                W A++SA   H D    + + + +L   ++P DP T+  + +  A    V+  WD
Sbjct: 403 PDEATWGALLSACKKHNDTQMCLRVADNLLE--LRPKDPSTYILLSNVYA----VNCKWD 456



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 36/220 (16%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           L+  YA+   L  AR   D+   +D   YSA+                            
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSAL---------------------------- 73

Query: 143 NAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
              ++ +  ++  E VL L+R M +   +RP+   ++S+ S      +L+ G+++H +  
Sbjct: 74  ---LAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFA 130

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            + Y  +  V +++ID Y K G    A++VFD    ++ ++WTA+IS YA++G   +A+ 
Sbjct: 131 ASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALD 190

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           LF  M  +G+     T+TA++S    +G    A  +F  M
Sbjct: 191 LFQSMPAHGL----FTWTALISGFVKAGNYTGAMGLFVEM 226



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 13/149 (8%)

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQP 273
           ++  YA++  L  A+R FD    R L +++A+++A +   D    + L   ML ++ ++P
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101

Query: 274 DPVTFTAVLSACA-----HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
           D     ++ SA         G    A    +  S    ++ S+    C  GV   AR++ 
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++      + VK S  VW AL+ G + +G
Sbjct: 162 DS------IGVKNSV-VWTALISGYASNG 183


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/468 (35%), Positives = 261/468 (55%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+ I+GY++ G Y+E   LF++M+ + V RPD  T+V+VL AC QS  I  G +
Sbjct: 198 KDVVSWNAXISGYAETGNYKEALELFKKMMKTNV-RPDESTMVTVLSACAQSGSIELGRQ 256

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y+KCG L                              
Sbjct: 257 VHSWINDHGFGXNLKIVNALIDLYSKCGEL------------------------------ 286

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E A  LFQ +    + +WN +I G    N ++  L L ++M  SG +PN VT+ SI S 
Sbjct: 287 -ETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSA 345

Query: 184 FSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID YAK G +  AQ+VFD    RSL 
Sbjct: 346 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A+ A  +F+ M  NGI+PD +TF  +LSAC+HSG++D    IF +M
Sbjct: 406 SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 465

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y + P +EHY CM+ +   +    EA + ++ M ++P   +W +LL    + G+VEL
Sbjct: 466 TRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVEL 525

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+    +L +IEPEN G+Y++++N+Y+ A RW+E  + R  + + G+ K+PG S IE   
Sbjct: 526 GESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDS 585

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 586 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 185/353 (52%), Gaps = 3/353 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++ WN+M  G++          L+  M++  +L P+  T   +L++C +S     G ++H
Sbjct: 68  LLIWNTMFRGHALSSDPVSALKLYVCMVSLGLL-PNSYTFPFLLKSCAKSXAFKEGQQLH 126

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V++    +DL+I  +LI MY + G L+ A+ + D+ S +D VSY+A+I+GY   G +E
Sbjct: 127 GQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIE 186

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A  +F  +    + +WNA ISG  +   ++  L+L ++M  + VRP+  T+ ++ S  +
Sbjct: 187 SAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACA 246

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
              +++ G+++H +   + +  N+ +  A+ID Y+K G L  A  +F     + +I W  
Sbjct: 247 QSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNT 306

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  Y       +A+ LF +ML +G +P+ VT  ++LSACAH G +D    I   +  + 
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRL 366

Query: 306 -GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G+  +      ++ + ++   I  A +    M +  S   W A+++G ++ G
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHG 418



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 11/177 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN++I GY+    Y+E   LF++ML S   +P+ VT++S+L AC     I  
Sbjct: 296 LSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE-KPNDVTMLSILSACAHLGAIDI 354

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G  +H + I+  +K    + NA      LI MYAKCG ++ A+ + D M ++   S++A+
Sbjct: 355 GRWIHVY-IDKRLK---GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAM 410

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           I G+ +HG    A D+F  M++ G+   +    GL+    H  +LDL R +  S  R
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTR 467



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F  ++ P L  WN +  G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G+++HG  +K  +D ++Y+ T++I  Y + G L  AQ+V D+   R ++ +TA+
Sbjct: 116 SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTAL 175

Query: 247 ISAYA-------AH------------------------GDASKAVSLFNEMLNNGIQPDP 275
           I+ YA       AH                        G+  +A+ LF +M+   ++PD 
Sbjct: 176 ITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDE 235

Query: 276 VTFTAVLSACAHSGLVD 292
            T   VLSACA SG ++
Sbjct: 236 STMVTVLSACAQSGSIE 252


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/470 (36%), Positives = 258/470 (54%), Gaps = 15/470 (3%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V + S I  +S  G +    AL  EML   ++ P   T+ S L AC     +  G  +H 
Sbjct: 99  VFYTSAIHAHSSRGLHLAALALLSEMLGRGLI-PTSHTLSSSLPAC---HGLALGRALHA 154

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           +  +  +  D ++  AL+GMYA+ G  D ARAL DEM D   V  +A+++ Y   G ++ 
Sbjct: 155 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 214

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A +LF  M       WNA+I G  Q+ R    L L R M  SGV P+ V I    S  + 
Sbjct: 215 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 274

Query: 187 FSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               + G+ +H Y VKN  R   N  V TA+ID Y K G L  A  VF+    + +++W 
Sbjct: 275 LGTAESGRWLHSY-VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWN 333

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+ YA HGD+ KA+ +F+++ + G+ P  +TF  +L+AC+HSGLVD+    F +M  +
Sbjct: 334 AMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEE 393

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EHY CMV +L RA  I EA   V  M + P   +W +LL    +  ++ LG+ 
Sbjct: 394 YAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQ 453

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           + D+L      N+G YI+++N+Y+  G W+E  RVR  MK SG+ K PG S IE    + 
Sbjct: 454 IADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 513

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
            FVA D S  ++++IY +LE++ G+++E+G+V         LDEV +E A
Sbjct: 514 EFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKA 563



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D + WN+MI GY+Q G   E   LFR ML S V  PD V ++  L A  Q      
Sbjct: 222 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV-DPDEVAIILALSAVAQLGTAES 280

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H++V  S  ++++  +  ALI MY KCGSL+ A ++ + + DKD V ++A+I+GY 
Sbjct: 281 GRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYA 340

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           +HG   KA+++F  ++  GL   +    GL+    H  ++D
Sbjct: 341 MHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVD 381


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/470 (36%), Positives = 258/470 (54%), Gaps = 15/470 (3%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V + S I  +S  G +    AL  EML   ++ P   T+ S L AC     +  G  +H 
Sbjct: 98  VFYTSAIHAHSSRGLHLAALALLSEMLGRGLI-PTSHTLSSSLPAC---HGLALGRALHA 153

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           +  +  +  D ++  AL+GMYA+ G  D ARAL DEM D   V  +A+++ Y   G ++ 
Sbjct: 154 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 213

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A +LF  M       WNA+I G  Q+ R    L L R M  SGV P+ V I    S  + 
Sbjct: 214 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 273

Query: 187 FSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               + G+ +H Y VKN  R   N  V TA+ID Y K G L  A  VF+    + +++W 
Sbjct: 274 LGTAESGRWLHSY-VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWN 332

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+ YA HGD+ KA+ +F+++ + G+ P  +TF  +L+AC+HSGLVD+    F +M  +
Sbjct: 333 AMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEE 392

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EHY CMV +L RA  I EA   V  M + P   +W +LL    +  ++ LG+ 
Sbjct: 393 YAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQ 452

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           + D+L      N+G YI+++N+Y+  G W+E  RVR  MK SG+ K PG S IE    + 
Sbjct: 453 IADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 512

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
            FVA D S  ++++IY +LE++ G+++E+G+V         LDEV +E A
Sbjct: 513 EFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKA 562



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D + WN+MI GY+Q G   E   LFR ML S V  PD V ++  L A  Q      
Sbjct: 221 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV-DPDEVAIILALSAVAQLGTAES 279

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H++V  S  ++++  +  ALI MY KCGSL+ A ++ + + DKD V ++A+I+GY 
Sbjct: 280 GRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYA 339

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           +HG   KA+++F  ++  GL   +    GL+    H  ++D
Sbjct: 340 MHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVD 380


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 258/466 (55%), Gaps = 3/466 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K  +  +N  I  +S  G    C  L+ +M  S    P+  +   +  AC    ++  
Sbjct: 42  IPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMC-SQGCSPNQYSFTFLFPACASLFNVYP 100

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+   +S    D++   AL+ MYAK G L  AR L DEM  +D  +++++I+GY  
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISS 179
            G +E A++LF  M    + +W A+ISG  QN ++   L++   ++   G +PN V+I+S
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGR 238
           +    S    L  GK I  YA  N + +N YV+ A+++ +A+ G +  AQ+VFD     R
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKR 280

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L  W  +I   A HG    A+ L+++ML   ++PD VTF  +L AC H G+V +   +F
Sbjct: 281 NLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLF 340

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M  ++ + P +EHY C+V +L RA  + EA   +  MP+ P + +WG LL   S  G+
Sbjct: 341 ESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGN 400

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VELG+   + LF++EP N GNY+I++N+Y+ AG W    R+R+ MK   + K  G S+IE
Sbjct: 401 VELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIE 460

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              G+  F+ +D S  KS +IY +L ++  +++   +V  D+ E+E
Sbjct: 461 VGDGIHEFIVEDRSHLKSGEIYALLHKIYDIIKLHKHVHHDQNEDE 506



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 27/212 (12%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K+IH Y+++N  D   +    +I+   +   L  A  +FD+    S+ ++   I  +++ 
Sbjct: 5   KQIHAYSLRNGLDHTKF----LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-------- 305
           G   +   L+ +M + G  P+  +FT +  ACA          +FN   GQ         
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACA---------SLFNVYPGQMLHSHFCKS 111

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G    +     ++ + ++   +  A +   +MPV+     W +L+ G + SG +E     
Sbjct: 112 GFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGHMEAAL-- 168

Query: 366 CDHLFEIEP-ENTGNYIIMANLYSQAGRWDEA 396
              LF   P  N  ++  + + Y+Q G++ +A
Sbjct: 169 --ELFNKMPVRNVISWTALISGYAQNGKYAKA 198


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 262/470 (55%), Gaps = 41/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M+ + + SWN++I G++Q G  +  KAL  + EM    +L PD  ++VS+L ACG+   +
Sbjct: 477 MNTKSVSSWNAVIGGHAQNG--DPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLL 533

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +G E+H FV+ + ++M+ ++  +L+ +Y  C    Y R   + M DK+ V         
Sbjct: 534 QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSV--------- 584

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  WNA++SG  QN      L L R+M + G+ P+ + I+
Sbjct: 585 ----------------------CWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIA 622

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    S  S L  GKE+H +A+KN    + +VA +++D YAK+GFL  +QR+F+R  G+
Sbjct: 623 SILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK 682

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +  W  +I+ +  HG  +KAV LF +M  +  QPD  TF  VL AC H+GLV +  +  
Sbjct: 683 EVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYL 742

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   Y ++P +EHYAC++ +L RA R++EA  F+++MP +P AK+W +LL  +    D
Sbjct: 743 AQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVD 802

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E+G+   + L  +E     +YI+++NLY+ AG+WD    VR++MK+  L K  G SWIE
Sbjct: 803 LEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIE 862

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
             G + SF+A + S   S++I  +  RL   + E GY      +L E+EE
Sbjct: 863 LRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEE 912



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 30/298 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           M +++++SWNS+I G+S+ GF+ E    FR +L S   L PD  T+V++L  C    ++ 
Sbjct: 271 MPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVD 330

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            GM +H   ++  +  +L +CNALI MY+KCG L  A  L  ++ +K  VS++++I  Y 
Sbjct: 331 VGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYS 390

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             GFV +  DL + M       W                      M+   +  N VTI +
Sbjct: 391 REGFVFETFDLLRKM-------W----------------------MEEELMEVNEVTILN 421

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +       S L   + +HGY++++ +     +  A I  YAK G L  A+ VF     +S
Sbjct: 422 LLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS 481

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  W A+I  +A +GD  KA+  + EM   GI PD  +  ++L AC   GL+    +I
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEI 539



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 199/453 (43%), Gaps = 79/453 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           +  + +VSWNSMI  YS+ GF  E   L R+M +   ++  + VT++++L AC + S+++
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
               +H + +    +    I NA I  YAKCGSL +A  +   M+ K             
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS------------ 481

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                              +S+WNAVI G  QN      LD   EM   G+ P+  +I S
Sbjct: 482 -------------------VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +         L+ GKEIHG+ ++N  + N +VA +++  Y         +  F+    ++
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKN 582

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-------------- 285
            + W A++S Y+ +   ++A+SLF +ML++G++PD +   ++L AC              
Sbjct: 583 SVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHC 642

Query: 286 ---------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV---GVL 321
                                A SG +  +  IFN ++G+      V  +  M+   GV 
Sbjct: 643 FALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK-----EVASWNVMITGFGVH 697

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH---LFEIEPENTG 378
            +  +  E  E + +   +P    +  +L     +G V  G         L+++EPE   
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPE-LE 756

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
           +Y  + ++  +AGR +EA     +M E   AKI
Sbjct: 757 HYACVIDMLGRAGRLNEALNFINEMPEEPDAKI 789



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 31/284 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++  WN++++GY +   Y+E    F E+++    +PD  T   +++AC    DI  G  
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH   ++  + MDL++ NA+I +Y KCG LD A  L D+M +++ +S++++I G+  +GF
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGF 291

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A   F+ +   G                              G+ P+  T+ ++  +
Sbjct: 292 WLEAYRAFRSLLESG-----------------------------DGLIPDVATMVTLLPV 322

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   N+  G  IHG AVK      + V  A+ID Y+K G L  A  +F + + +S++ W
Sbjct: 323 CSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSW 382

Query: 244 TAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSAC 285
            ++I AY+  G   +   L  +M      ++ + VT   +L AC
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 142/316 (44%), Gaps = 37/316 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +LQ CGQ  ++  G ++   + + S    D  +   LI MY+ CG    +R + D + +K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREM 165
           +                      LFQ         WNA++SG V+N  + EA+   +  +
Sbjct: 173 N----------------------LFQ---------WNALVSGYVRNELYDEAIHTFLELI 201

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +  +P+  T   +    +   ++  GK +HG AVK     +++V  A+I  Y K GFL
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN--NGIQPDPVTFTAVLS 283
             A  +FD+   ++LI W ++I  ++ +G   +A   F  +L   +G+ PD  T   +L 
Sbjct: 262 DEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            C+  G VD    + + M+ + G+   +     ++ + S+   +SEA     K+  K S 
Sbjct: 322 VCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK-SV 379

Query: 344 KVWGALLYGASISGDV 359
             W +++   S  G V
Sbjct: 380 VSWNSMIGAYSREGFV 395



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 99/217 (45%), Gaps = 13/217 (5%)

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI-HGYAV 201
           N  +  L +  ++ A  DL +  +A G+         +      + N++ G+++     V
Sbjct: 85  NGALDFLQRAWKNNAGYDLAQRKEAMGM---------LLQKCGQYKNVEIGRKLDEMLCV 135

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            +++  +  + T +I  Y+  G+   ++ VFDR   ++L  W A++S Y  +    +A+ 
Sbjct: 136 SSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIH 195

Query: 262 LFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            F E+++    QPD  TF  ++ AC     +     + + M+ + G+   +     M+ +
Sbjct: 196 TFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV-HGMAVKMGLIMDLFVGNAMIAL 254

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             +   + EA E   KMP + +   W +L+ G S +G
Sbjct: 255 YGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENG 290


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 264/470 (56%), Gaps = 43/470 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G  +E   LF+EM+ + V RPD  T+VSV+ AC QS+ I  G +
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNV-RPDESTMVSVVSACAQSASIELGRQ 241

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y KCG                                
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGE------------------------------- 270

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A  LF+ +    + +WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVA----TAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +H   ++ G+ IH Y   N+  + +  A    T++ID YAK G +  AQ+VFD    RS
Sbjct: 331 CAHLGAIEIGRWIHVYI--NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 388

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W A+I  +A HG A+ A  +F+ M  N I+PD +TF  +LSAC+HSG++D    IF 
Sbjct: 389 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 448

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   Y I P +EHY CM+ +L  +    EA E ++ M ++P   +W +LL    + G+V
Sbjct: 449 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 508

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+    +L +IEP+N G+Y++++N+Y+ AGRW+E  ++R  + + G+ K+PG S IE 
Sbjct: 509 ELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 568

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
              +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 569 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 618



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 209/404 (51%), Gaps = 6/404 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L P+  T   +L++C +S     G ++
Sbjct: 52  NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSKAFREGQQI 110

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +DL++  +LI MY + G L+ AR + D+ S +D VSY+A+I+GY   G++
Sbjct: 111 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYI 170

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F  +    + +WNA+ISG  +   ++  L+L +EM  + VRP+  T+ S+ S  
Sbjct: 171 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 230

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  ++++ G+++H +   + +  N+ +  A+ID Y K G +  A  +F+    + +I W 
Sbjct: 231 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 290

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G ++    I   ++ +
Sbjct: 291 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 350

Query: 305 Y-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--DVEL 361
             G+  +  H   ++ + ++   I EA + V    +  S   W A+++G ++ G  +   
Sbjct: 351 LKGVANASSHRTSLIDMYAKCGDI-EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 409

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             F      EIEP++   ++ + +  S +G  D    +   MKE
Sbjct: 410 DIFSRMRKNEIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMKE 452



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 16/207 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN++I GY+    Y+E   LF+EML S    P+ VT++S+L AC     I  
Sbjct: 281 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEI 339

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G  +H + I   +K    + NA      LI MYAKCG ++ A+ + D + ++   S++A+
Sbjct: 340 GRWIHVY-INKRLK---GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAM 395

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----G 169
           I G+ +HG    A D+F  M++  +   +    GL+    H  +LDL R +  S      
Sbjct: 396 IFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYK 455

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEI 196
           + P       +  L  H    K  +E+
Sbjct: 456 ITPKLEHYGCMIDLLGHSGLFKEAEEM 482



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   ++   + L L   M + G+ PN  T   +    + 
Sbjct: 41  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVA-------------------------------TAI 215
               + G++IHG+ +K  YD ++YV                                TA+
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 160

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           I  YA  G++  AQ++FD    + ++ W A+IS YA  G+  +A+ LF EM+   ++PD 
Sbjct: 161 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 220

Query: 276 VTFTAVLSACAHSGLVD 292
            T  +V+SACA S  ++
Sbjct: 221 STMVSVVSACAQSASIE 237


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/457 (35%), Positives = 256/457 (56%), Gaps = 14/457 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + ++I G     +Y +   L+ +M+NS ++ PD   V SVL+ACG    +  G EV
Sbjct: 94  NVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLV-PDSYAVTSVLKACGCHLALKEGREV 152

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ V++  +  +  I   LI +Y KCG+ + AR + DEM ++D V+ + +I+ Y  HG  
Sbjct: 153 HSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIK 212

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +                W A+I GLV+N      L++ R MQ   V PN VTI  + S  
Sbjct: 213 DTV-------------CWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSAC 259

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S    L+ G+ +  Y  K+R + N +V  A+I+ Y++ G +  AQRVF++ K +++I + 
Sbjct: 260 SELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYN 319

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I  +A HG + +AV LF  ++  G  P  VTF  VL+AC+H GL +  ++IF++M+  
Sbjct: 320 SMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKD 379

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI+P +EHY CMV +L R  R+ EA  F+  M V P   + GALL    I G++EL + 
Sbjct: 380 YGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAER 439

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L   +  ++G YI+++N YS +G+W EA  VR  M+E G+ K PG S IE +  + 
Sbjct: 440 VAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIH 499

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
            F+  D    + E+IY  LE L  ++R EGY    EV
Sbjct: 500 EFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEV 536



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 134/280 (47%), Gaps = 12/280 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V W +MI G  + G       +FR M    V+ P+ VT+V VL AC +   +  G  
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVM-PNEVTIVCVLSACSELGALQLGRW 270

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V +++ +  I+++ ++  ALI MY++CG +D A+ + ++M +K+ ++Y+++I G+ +HG 
Sbjct: 271 VRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGK 330

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GVRPNAVTIS 178
             +A++LF+ + + G +  +    G++    H  + +L  E+  S     G+ P      
Sbjct: 331 SVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYG 390

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--- 235
            +  L      L   +E + +    +   +  +  A++      G L  A+RV       
Sbjct: 391 CMVDLLGRLGRL---EEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVAC 447

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           K      +  + +AY++ G   +A  +   M   GI+ +P
Sbjct: 448 KNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEP 487



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 28/259 (10%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F   + P +  + A+I GLV +  +   + L  +M  S + P++  ++S+      
Sbjct: 83  ASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGC 142

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL------ 240
              LK G+E+H   +K     N  +   +I+ Y K G    A+RVFD    R +      
Sbjct: 143 HLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVM 202

Query: 241 ------------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
                       + WTA+I     +G++++A+ +F  M    + P+ VT   VLSAC+  
Sbjct: 203 INYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSEL 262

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHY--ACMVGVLSRARRISEATEFVSKMPVKP----S 342
           G +     + + M      +  + H+    ++ + SR   I EA     +M  K     +
Sbjct: 263 GALQLGRWVRSYMDKH---RIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYN 319

Query: 343 AKVWGALLYGASISGDVEL 361
           + + G  L+G S+   VEL
Sbjct: 320 SMIMGFALHGKSVEA-VEL 337



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 62/299 (20%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEI---HGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           SG +P   T +      S   N K   +I   +   ++N + ++ +V   ++   +    
Sbjct: 21  SGTKPKN-TPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNS 79

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A ++F   +  ++ ++TA+I         +  + L+ +M+N+ + PD    T+VL A
Sbjct: 80  IGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKA 139

Query: 285 CA-----------HS------------------------GLVDKAWDIFNAMSGQ----- 304
           C            HS                        G  + A  +F+ M  +     
Sbjct: 140 CGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVAS 199

Query: 305 ---------YGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYG 352
                    +GI+ +V  +  M+  L R    + A E    M    V P+      +L  
Sbjct: 200 TVMINYYFDHGIKDTV-CWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSA 258

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
            S  G ++LG++V  ++ +   E   N+ +   + N+YS+ G  DEA RV EQMKE  +
Sbjct: 259 CSELGALQLGRWVRSYMDKHRIE--LNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNV 315



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++++++NSMI G++  G   E   LFR ++      P  VT V VL AC        
Sbjct: 310 MKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQG-FTPSSVTFVGVLNACSHGGLAEL 368

Query: 61  GMEV-HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G E+ H+   +  I+  +     ++ +  + G L+ A + +  M    D V   A++S  
Sbjct: 369 GFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSAC 428

Query: 119 MVHGFVEKA 127
            +HG +E A
Sbjct: 429 KIHGNLELA 437


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 268/462 (58%), Gaps = 32/462 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K+DI++WN++I+GYSQ G + +  +LF +M +  +   +  T+ +VL++      I  
Sbjct: 345 MPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI-DFNQTTLSTVLKSVASLQAIKV 403

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H   I+S I  D ++ N+L+  Y KC  +D A  + +E + +D V+Y+++I+ Y  
Sbjct: 404 CKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQ 463

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ L+                                +MQ + ++P+    SS+
Sbjct: 464 YGDGEEALKLY-------------------------------LQMQDADIKPDPFICSSL 492

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  ++ S  + GK++H +A+K  +  +I+ + ++++ YAK G +  A R F     R +
Sbjct: 493 LNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGI 552

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I  YA HG   +A+ LFN+ML +G+ P+ +T  +VL AC H+GLV++    F  
Sbjct: 553 VSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEK 612

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+P+ EHYACM+ +L R+ +++EA E V+ +P +    VWGALL  A I  ++E
Sbjct: 613 MEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIE 672

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     LF++EPE +G ++++AN+Y+ AG W+   +VR+ MK+S + K PG SWIE  
Sbjct: 673 LGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIK 732

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
             + +F+  D S  +S++IY  L++L  L+ + GY  + E++
Sbjct: 733 DKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEID 774



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 169/370 (45%), Gaps = 60/370 (16%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S+ D+VSW+S+++GY Q GF EE   +F EM    V + +  T  SVL+AC    D+  G
Sbjct: 43  SELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGV-KCNEFTFPSVLKACSMKRDLNMG 101

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH   + +  + D ++ N L+ MYAKCG LD +R L   + +++ VS           
Sbjct: 102 RKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVS----------- 150

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WNA+ S  VQ+      + L +EM  SG+ PN  +IS I 
Sbjct: 151 --------------------WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIIL 190

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +       G++IHG  +K   D + + A A++D Y+K G + GA  VF       ++
Sbjct: 191 NACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVV 250

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGL 290
            W AII+    H     A+ L +EM  +G +P+  T ++ L ACA           HS L
Sbjct: 251 SWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL 310

Query: 291 V--DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           +  D   D+F A+               +V + S+   + +A      MP K     W A
Sbjct: 311 IKMDAHSDLFAAVG--------------LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNA 355

Query: 349 LLYGASISGD 358
           L+ G S  GD
Sbjct: 356 LISGYSQCGD 365



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 204/464 (43%), Gaps = 91/464 (19%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R++VSWN++ + Y Q     E   LF+EM+ S ++ P+  ++  +L AC    +   G 
Sbjct: 145 ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM-PNEFSISIILNACAGLQEGDLGR 203

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +++  + +D +  NAL+ MY+K G                               
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGE------------------------------ 233

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A+ +FQ +  P + +WNA+I+G V ++ ++  L L+ EM+ SG RPN  T+SS   
Sbjct: 234 -IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALK 292

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +     + G+++H   +K     +++ A  ++D Y+K   +  A+R +D    + +I 
Sbjct: 293 ACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA 352

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA---------------- 286
           W A+IS Y+  GD   AVSLF++M +  I  +  T + VL + A                
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEAT 331
            SG+    + + N++   YG    ++                Y  M+   S+     EA 
Sbjct: 413 KSGIYSDFY-VINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEAL 471

Query: 332 EFVSKMP---VKPSAKVWGALLYGASISGDVELGK----------FVCDHLFEIEPENTG 378
           +   +M    +KP   +  +LL   +     E GK          F+CD    I   N+ 
Sbjct: 472 KLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCD----IFASNS- 526

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
               + N+Y++ G  ++ADR   ++   G+      SW    GG
Sbjct: 527 ----LVNMYAKCGSIEDADRAFSEIPNRGIV-----SWSAMIGG 561



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 192/428 (44%), Gaps = 69/428 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSWN++IAG       +    L  EM  S   RP+  T+ S L+AC        G ++
Sbjct: 248 DVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGT-RPNMFTLSSALKACAAMGFKELGRQL 306

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ +I+     DL+    L+ MY+KC  +D AR   D M  KD ++              
Sbjct: 307 HSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA-------------- 352

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WNA+ISG  Q   H   + L  +M +  +  N  T+S++    
Sbjct: 353 -----------------WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSV 395

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    +K  K+IH  ++K+    + YV  +++DTY K   +  A ++F+      L+ +T
Sbjct: 396 ASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYT 455

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA---------- 294
           ++I+AY+ +GD  +A+ L+ +M +  I+PDP   +++L+ACA+    ++           
Sbjct: 456 SMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKF 515

Query: 295 ---WDIF--NAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEATEFV 334
               DIF  N++   Y    S+E                ++ M+G  ++     EA    
Sbjct: 516 GFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLF 575

Query: 335 SKM---PVKPSAKVWGALLYGASISGDVELGKFVCDH---LFEIEPENTGNYIIMANLYS 388
           ++M    V P+     ++L   + +G V  GK   +    +F I+P    +Y  M +L  
Sbjct: 576 NQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQE-HYACMIDLLG 634

Query: 389 QAGRWDEA 396
           ++G+ +EA
Sbjct: 635 RSGKLNEA 642



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 137/308 (44%), Gaps = 33/308 (10%)

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           ME+H  +I+     D  + N L+ +Y+KC    YAR L+DE S+ D VS           
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVS----------- 49

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               W++++SG VQN   E  L +  EM   GV+ N  T  S+ 
Sbjct: 50  --------------------WSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVL 89

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              S   +L  G+++HG AV   ++ + +VA  ++  YAK G L  ++R+F     R+++
Sbjct: 90  KACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVV 149

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+ S Y       +AV LF EM+ +GI P+  + + +L+ACA     D    I   M
Sbjct: 150 SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             + G+         +V + S+A  I  A      +   P    W A++ G  +    +L
Sbjct: 210 L-KMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDI-AHPDVVSWNAIIAGCVLHDCNDL 267

Query: 362 GKFVCDHL 369
              + D +
Sbjct: 268 ALMLLDEM 275


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 252/466 (54%), Gaps = 37/466 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW +MIAGY+Q  F ++    FR+ML+  + R D V + + + AC     +  G +
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQ 572

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H     S    DL   NAL+ +Y++CG ++ +    ++    D ++             
Sbjct: 573 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA------------- 619

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++SG  Q+  +E  L +   M   G+  N  T  S    
Sbjct: 620 ------------------WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  +N+K GK++H    K  YD    V  A+I  YAK G +  A++ F     ++ + W
Sbjct: 662 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 721

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            AII+AY+ HG  S+A+  F++M+++ ++P+ VT   VLSAC+H GLVDK    F +M+ 
Sbjct: 722 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 781

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YG+ P  EHY C+V +L+RA  +S A EF+ +MP+KP A VW  LL    +  ++E+G+
Sbjct: 782 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 841

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           F   HL E+EPE++  Y++++NLY+ + +WD  D  R++MKE G+ K PG+SWIE    +
Sbjct: 842 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 901

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            SF   D +   +++I+   + L     E GYV     LL+E++ E
Sbjct: 902 HSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHE 947



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 38/362 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD V++N++I G SQ G+ E+   LF+ M +   L PD  T+ S++ AC     +  
Sbjct: 309 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFR 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +  +     +  I  AL+ +YAKC                              
Sbjct: 368 GQQLHAYTTKLGFASNNKIEGALLNLYAKCAD---------------------------- 399

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVIS--GLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              +E A+D F   +   +  WN ++   GL+ + R+     + R+MQ   + PN  T  
Sbjct: 400 ---IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS--FRIFRQMQIEEIVPNQYTYP 454

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI        +L+ G++IH   +K  +  N YV + +ID YAK G L  A  +  RF G+
Sbjct: 455 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 514

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ WT +I+ Y  +    KA++ F +ML+ GI+ D V  T  +SACA    + +   I 
Sbjct: 515 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI- 573

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A +   G    +     +V + SR  +I E+     +     +   W AL+ G   SG+
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSGFQQSGN 632

Query: 359 VE 360
            E
Sbjct: 633 NE 634



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 165/353 (46%), Gaps = 34/353 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V WN M+  Y           +FR+M    ++ P+  T  S+L+ C +  D+  G ++
Sbjct: 414 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIRLGDLELGEQI 472

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ +I+++ +++ ++C+ LI MYAK G LD A  +L   + KD VS++ +I+GY  + F 
Sbjct: 473 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 532

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +KA+  F                               R+M   G+R + V +++  S  
Sbjct: 533 DKALTTF-------------------------------RQMLDRGIRSDEVGLTNAVSAC 561

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    LK G++IH  A  + +  ++    A++  Y++ G +  +   F++ +    I W 
Sbjct: 562 AGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWN 621

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++S +   G+  +A+ +F  M   GI  +  TF + + A + +  + +   + +A+  +
Sbjct: 622 ALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITK 680

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G     E    ++ + ++   IS+A +   ++  K     W A++   S  G
Sbjct: 681 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG 732



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 159/361 (44%), Gaps = 37/361 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R I +WN MI   +      E   LF  M++  V  P+  T   VL+AC +   + F
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEAC-RGGSVAF 163

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +  ++H  ++   ++    +CN LI +Y++ G +D AR + D +  KD  S        
Sbjct: 164 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS-------- 215

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  W A+ISGL +N      + L  +M   G+ P     S
Sbjct: 216 -----------------------WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 252

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S      +L+ G+++HG  +K  +  + YV  A++  Y   G L  A+ +F     R
Sbjct: 253 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 312

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + +  +I+  +  G   KA+ LF  M  +G++PD  T  +++ AC+  G + +   + 
Sbjct: 313 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL- 371

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A + + G   + +    ++ + ++   I  A ++  +  V+ +  +W  +L    +  D
Sbjct: 372 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYGLLDD 430

Query: 359 V 359
           +
Sbjct: 431 L 431



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 32/286 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D  SW +MI+G S+     E   LF +M    ++ P      SVL AC +   +  G +
Sbjct: 211 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLEIGEQ 269

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  V++     D ++CNAL+ +Y   G+L  A  +   MS +D V              
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV-------------- 315

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            T+N +I+GL Q    E  ++L + M   G+ P++ T++S+   
Sbjct: 316 -----------------TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 358

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G+++H Y  K  +  N  +  A+++ YAK   +  A   F   +  ++++W
Sbjct: 359 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 418

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             ++ AY    D   +  +F +M    I P+  T+ ++L  C   G
Sbjct: 419 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 464



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 17/214 (7%)

Query: 83  LIGMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           L G     GSLD  R L  ++     D +      +   Y+  G +  A  +F  M    
Sbjct: 51  LEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERT 110

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG----- 193
           + TWN +I  L   N    V  L   M +  V PN  T S +          +GG     
Sbjct: 111 IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA------CRGGSVAFD 164

Query: 194 --KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
             ++IH   +      +  V   +ID Y++ GF+  A+RVFD  + +    W A+IS  +
Sbjct: 165 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 224

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            +   ++A+ LF +M   GI P P  F++VLSAC
Sbjct: 225 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 258



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S ++ VSWN++I  YS+ GF  E    F +M++S V RP+ VT+V VL AC     +  
Sbjct: 713 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV-RPNHVTLVGVLSACSHIGLVDK 771

Query: 61  GM---EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+   E  N       K + ++C  ++ M  + G L  A+  + EM  K D + +  ++S
Sbjct: 772 GIAYFESMNSEYGLSPKPEHYVC--VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 829

Query: 117 GYMVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
             +VH  +E     A  L ++   P  S    ++S L   ++     DL R+ M+  GV+
Sbjct: 830 ACVVHKNMEIGEFAAHHLLEL--EPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVK 887

Query: 172 --PNAVTI---SSIFSLFSHFSNLKGGKEIHGY 199
             P    I   +SI S +    N     EIH Y
Sbjct: 888 KEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 920


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 251/440 (57%), Gaps = 1/440 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  + V WN+M+  YS     E    L+ +ML++ V   +  T   +L+AC   S    
Sbjct: 70  ISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPH-NSYTFPFLLKACSALSAFEE 128

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H  +I+    ++++  N+L+ +YA  G++  A  L +++  +D VS++ +I GY+ 
Sbjct: 129 TQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIK 188

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++ A  +FQ M    + +W  +I G V+   H+  L L+++M  +G++P+++T+S  
Sbjct: 189 FGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCS 248

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ GK IH Y  KN    +  +   + D Y K G +  A  VF + + + +
Sbjct: 249 LSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCV 308

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTAII   A HG   +A+  F +M   GI P+ +TFTA+L+AC+H+GL ++   +F +
Sbjct: 309 CAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFES 368

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  Y I+PS+EHY CMV ++ RA  + EA EF+  MPVKP+A +WGALL    +    E
Sbjct: 369 MSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFE 428

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK +   L E++P+++G YI +A++Y+ AG W++  RVR Q+K  GL   PG S I  +
Sbjct: 429 LGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLN 488

Query: 421 GGLQSFVAKDTSGDKSEQIY 440
           G +  F A D S    ++IY
Sbjct: 489 GVVHEFFAGDGSHPHIQEIY 508



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 153/384 (39%), Gaps = 70/384 (18%)

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMD--LFQVMKRPGLSTWNAVISGLVQNNRHE 156
           LL + + +++++ S ++  Y     V  A    +F  +  P    WN ++     +N  E
Sbjct: 33  LLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPE 92

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
           A L L  +M  + V  N+ T   +    S  S  +  ++IH + +K  +   +Y   +++
Sbjct: 93  AALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLL 152

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA-------------------- 256
             YA +G +  A  +F++   R ++ W  +I  Y   G+                     
Sbjct: 153 RVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTT 212

Query: 257 -----------SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQ 304
                       +A+SL  +ML  GI+PD +T +  LSACA  G +++  W        +
Sbjct: 213 MIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNE 272

Query: 305 YGIQP-----------------------------SVEHYACMVGVLSRARRISEATEFVS 335
             I P                              V  +  ++G L+   +  EA ++ +
Sbjct: 273 IKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFT 332

Query: 336 KMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQ 389
           +M    + P++  + A+L   S +G  E GK + + +   + I+P +  +Y  M +L  +
Sbjct: 333 QMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKP-SMEHYGCMVDLMGR 391

Query: 390 AGRWDEADRVREQMKESGLAKIPG 413
           AG   EA    E M     A I G
Sbjct: 392 AGLLKEAREFIESMPVKPNAAIWG 415



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 133/292 (45%), Gaps = 21/292 (7%)

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA--QRVFDRFKGRS 239
           +L    SN+K   +IHG  +K    RN    + ++ +YA+   ++ A  + VFD     +
Sbjct: 15  ALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPN 74

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            +IW  ++ AY+   D   A+ L+++ML+N +  +  TF  +L AC+     ++   I +
Sbjct: 75  TVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQI-H 133

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           A   + G    V     ++ V + +  I  A    +++P +     W  ++ G    G++
Sbjct: 134 AHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVS-WNIMIDGYIKFGNL 192

Query: 360 ELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           ++       +F+  PE N  ++  M   + + G   EA  + +QM  +G+   P    + 
Sbjct: 193 DMAY----KIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIK--PDSITLS 246

Query: 419 CS-------GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
           CS       G L+      T  +K+E   + ++ +LG +  + YV   E+E+
Sbjct: 247 CSLSACAGLGALEQGKWIHTYIEKNE---IKIDPVLGCVLTDMYVKCGEMEK 295


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 252/454 (55%), Gaps = 1/454 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + D   WN MI G+S     E    L++ ML       +  T  S+L+AC   S +    
Sbjct: 106 RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPH-NAYTFPSLLKACSNLSALEETT 164

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  + +   + D++  N+LI  YA  G+   A  L D +   D VS++++I GY   G
Sbjct: 165 QIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAG 224

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            ++ A+ LF+ M      +W  +ISG VQ   H+  L L  EMQ S V P+ V++++  S
Sbjct: 225 KMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALS 284

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L+ GK IH Y  K R   +  +   +ID YAK G +  A  VF   + +S+  
Sbjct: 285 ACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQA 344

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+IS YA HG   +A+S F EM   GI+P+ +TFT VL+AC+++GLV++   IF  M 
Sbjct: 345 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNME 404

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y ++P++EHY C+V +LSRA  + EA  F+ +MP+KP+A +WGALL    I  ++ELG
Sbjct: 405 RDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 464

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + + + L  I+P + G Y+  AN+++   +WD+A   R  MKE G+AK+PG S I   G 
Sbjct: 465 EEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 524

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
              F+A D S  + E+I    + +   + E GYV
Sbjct: 525 THEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYV 558



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 40/278 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ +SW +MI+GY Q G ++E   LF EM NS V  PD V++ + L AC Q   +  
Sbjct: 236 MVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDV-EPDNVSLANALSACAQLGALEQ 294

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+++ ++ I+MD  +   LI MYAKCG +  A  +   +  K   +++A+ISGY  
Sbjct: 295 GKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAY 354

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+  F                                EMQ  G++PN +T +++
Sbjct: 355 HGHGREAISKFM-------------------------------EMQKMGIKPNVITFTTV 383

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT--AIIDTYAKTGFLHGAQRVFDRFKGR 238
            +  S+   ++ GK I  Y ++  Y+    +     ++D  ++ G L  A+R       +
Sbjct: 384 LTACSYTGLVEEGKLIF-YNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLK 442

Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            + +IW A++ A   H    K + L  E+    I  DP
Sbjct: 443 PNAVIWGALLKACRIH----KNIELGEEIGEILIAIDP 476



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 144/348 (41%), Gaps = 68/348 (19%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           F+  A  +F    RP    WN +I G   ++  E  L L + M       NA T  S+  
Sbjct: 93  FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLK 152

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S+ S L+   +IH    K  Y+ ++Y   ++I++YA TG    A  +FDR      + 
Sbjct: 153 ACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVS 212

Query: 243 WTAIISAYAAHGDA-------------------------------SKAVSLFNEMLNNGI 271
           W ++I  YA  G                                  +A+ LF+EM N+ +
Sbjct: 213 WNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDV 272

Query: 272 QPDPVTFTAVLSACAHSG--------------------------LVD---KAWDIFNAMS 302
           +PD V+    LSACA  G                          L+D   K  D+  A+ 
Sbjct: 273 EPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALE 332

Query: 303 GQYGIQ-PSVEHYACMVGVLSRARRISEA-TEF--VSKMPVKPSAKVWGALLYGASISGD 358
               IQ  SV+ +  ++   +      EA ++F  + KM +KP+   +  +L   S +G 
Sbjct: 333 VFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGL 392

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           VE GK +  ++   + ++P    +Y  + +L S+AG  DEA R  ++M
Sbjct: 393 VEEGKLIFYNMERDYNLKP-TIEHYGCVVDLLSRAGLLDEAKRFIQEM 439


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 252/466 (54%), Gaps = 37/466 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW +MIAGY+Q  F ++    FR+ML+  + R D V + + + AC     +  G +
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQ 612

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H     S    DL   NAL+ +Y++CG ++ +    ++    D ++             
Sbjct: 613 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA------------- 659

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++SG  Q+  +E  L +   M   G+  N  T  S    
Sbjct: 660 ------------------WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  +N+K GK++H    K  YD    V  A+I  YAK G +  A++ F     ++ + W
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            AII+AY+ HG  S+A+  F++M+++ ++P+ VT   VLSAC+H GLVDK    F +M+ 
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 821

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YG+ P  EHY C+V +L+RA  +S A EF+ +MP+KP A VW  LL    +  ++E+G+
Sbjct: 822 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 881

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           F   HL E+EPE++  Y++++NLY+ + +WD  D  R++MKE G+ K PG+SWIE    +
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            SF   D +   +++I+   + L     E GYV     LL+E++ E
Sbjct: 942 HSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHE 987



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 38/362 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD V++N++I G SQ G+ E+   LF+ M +   L PD  T+ S++ AC     +  
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFR 407

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +  +     +  I  AL+ +YAKC                              
Sbjct: 408 GQQLHAYTTKLGFASNNKIEGALLNLYAKCAD---------------------------- 439

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVIS--GLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              +E A+D F   +   +  WN ++   GL+ + R+     + R+MQ   + PN  T  
Sbjct: 440 ---IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS--FRIFRQMQIEEIVPNQYTYP 494

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI        +L+ G++IH   +K  +  N YV + +ID YAK G L  A  +  RF G+
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ WT +I+ Y  +    KA++ F +ML+ GI+ D V  T  +SACA    + +   I 
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI- 613

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A +   G    +     +V + SR  +I E+     +     +   W AL+ G   SG+
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSGFQQSGN 672

Query: 359 VE 360
            E
Sbjct: 673 NE 674



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 165/353 (46%), Gaps = 34/353 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V WN M+  Y           +FR+M    ++ P+  T  S+L+ C +  D+  G ++
Sbjct: 454 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIRLGDLELGEQI 512

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ +I+++ +++ ++C+ LI MYAK G LD A  +L   + KD VS++ +I+GY  + F 
Sbjct: 513 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 572

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +KA+  F                               R+M   G+R + V +++  S  
Sbjct: 573 DKALTTF-------------------------------RQMLDRGIRSDEVGLTNAVSAC 601

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    LK G++IH  A  + +  ++    A++  Y++ G +  +   F++ +    I W 
Sbjct: 602 AGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWN 661

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++S +   G+  +A+ +F  M   GI  +  TF + + A + +  + +   + +A+  +
Sbjct: 662 ALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITK 720

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G     E    ++ + ++   IS+A +   ++  K     W A++   S  G
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG 772



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 159/361 (44%), Gaps = 37/361 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R I +WN MI   +      E   LF  M++  V  P+  T   VL+AC +   + F
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEAC-RGGSVAF 203

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +  ++H  ++   ++    +CN LI +Y++ G +D AR + D +  KD  S        
Sbjct: 204 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS-------- 255

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  W A+ISGL +N      + L  +M   G+ P     S
Sbjct: 256 -----------------------WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 292

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S      +L+ G+++HG  +K  +  + YV  A++  Y   G L  A+ +F     R
Sbjct: 293 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 352

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + +  +I+  +  G   KA+ LF  M  +G++PD  T  +++ AC+  G + +   + 
Sbjct: 353 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL- 411

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A + + G   + +    ++ + ++   I  A ++  +  V+ +  +W  +L    +  D
Sbjct: 412 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYGLLDD 470

Query: 359 V 359
           +
Sbjct: 471 L 471



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 32/286 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D  SW +MI+G S+     E   LF +M    ++ P      SVL AC +   +  G +
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLEIGEQ 309

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  V++     D ++CNAL+ +Y   G+L  A  +   MS +D V+Y            
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY------------ 357

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                              N +I+GL Q    E  ++L + M   G+ P++ T++S+   
Sbjct: 358 -------------------NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G+++H Y  K  +  N  +  A+++ YAK   +  A   F   +  ++++W
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             ++ AY    D   +  +F +M    I P+  T+ ++L  C   G
Sbjct: 459 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 17/214 (7%)

Query: 83  LIGMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           L G     GSLD  R L  ++     D +      +   Y+  G +  A  +F  M    
Sbjct: 91  LEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERT 150

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG----- 193
           + TWN +I  L   N    V  L   M +  V PN  T S +          +GG     
Sbjct: 151 IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA------CRGGSVAFD 204

Query: 194 --KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
             ++IH   +      +  V   +ID Y++ GF+  A+RVFD  + +    W A+IS  +
Sbjct: 205 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            +   ++A+ LF +M   GI P P  F++VLSAC
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 298



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S ++ VSWN++I  YS+ GF  E    F +M++S V RP+ VT+V VL AC     +  
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV-RPNHVTLVGVLSACSHIGLVDK 811

Query: 61  GM---EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+   E  N       K + ++C  ++ M  + G L  A+  + EM  K D + +  ++S
Sbjct: 812 GIAYFESMNSEYGLSPKPEHYVC--VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869

Query: 117 GYMVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
             +VH  +E     A  L ++   P  S    ++S L   ++     DL R+ M+  GV+
Sbjct: 870 ACVVHKNMEIGEFAAHHLLEL--EPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVK 927

Query: 172 --PNAVTI---SSIFSLFSHFSNLKGGKEIHGY 199
             P    I   +SI S +    N     EIH Y
Sbjct: 928 KEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 960


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/527 (31%), Positives = 274/527 (51%), Gaps = 72/527 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+ D V+WN MI+GY Q G  EE    F EM++S VL PD +T  S+L +  +  ++ +
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL-PDAITFSSLLPSVSKFENLEY 358

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAK-------------CGSLDYA----------- 96
             ++H +++   I +D+++ +ALI  Y K             C S+D             
Sbjct: 359 CKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLH 418

Query: 97  -----------RALLDEMSDKDEVSYSAIIS----------GYMVHGFVEK--------- 126
                      R L+      +E++  +I+           G  +HGF+ K         
Sbjct: 419 NGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI 478

Query: 127 ----------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
                           A ++F+ + +  + +WN++I+   Q++   A +D+ R+M  SG+
Sbjct: 479 GCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGI 538

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             + V+IS+  S  ++  +   GK IHG+ +K+    ++Y  + +ID YAK G L  A  
Sbjct: 539 CYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMN 598

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSG 289
           VF   K ++++ W +II+A   HG    ++ LF+EM+  +GI+PD +TF  ++S+C H G
Sbjct: 599 VFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVG 658

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            VD+    F +M+  YGIQP  EHYAC+V +  RA R++EA E V  MP  P A VWG L
Sbjct: 659 DVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTL 718

Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           L    +  +VEL +     L +++P N+G Y++++N ++ A  W+   +VR  MKE  + 
Sbjct: 719 LGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQ 778

Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           KIPG SWIE +     FV+ D +  +S  IY +L  LLG +R EGY+
Sbjct: 779 KIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYI 825



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 32/280 (11%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D V WN M+ GY++ G  +     F  M    +  P+ VT   VL  C     I  G+
Sbjct: 201 QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQI-SPNAVTFDCVLSVCASKLLIDLGV 259

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  V+ S +  +  I N+L+ MY+KCG  D                            
Sbjct: 260 QLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD---------------------------- 291

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
               A  LF++M R    TWN +ISG VQ+   E  L    EM +SGV P+A+T SS+  
Sbjct: 292 ---DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLP 348

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S F NL+  K+IH Y +++    +I++ +A+ID Y K   +  AQ +F +     +++
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           +TA+IS Y  +G    ++ +F  ++   I P+ +T  ++L
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 35/315 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +LQAC   + +  G +VH F+I + I  D +    ++GMYA CGS           SD  
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSF----------SDCG 90

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
           ++ Y                +DL    +R  +  WN++IS  V+N      L    +M  
Sbjct: 91  KMFYR---------------LDL----RRSSIRPWNSIISSFVRNGLLNQALAFYFKMLC 131

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV P+  T   +        N KG   +         D N +VA+++I  Y + G +  
Sbjct: 132 FGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDV 191

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             ++FDR   +  +IW  +++ YA  G     +  F+ M  + I P+ VTF  VLS CA 
Sbjct: 192 PSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251

Query: 288 SGLVDKAWDIFN--AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
             L+D    +     +SG    + S+++   ++ + S+  R  +A++   +M  +     
Sbjct: 252 KLLIDLGVQLHGLVVVSG-VDFEGSIKNS--LLSMYSKCGRFDDASKLF-RMMSRADTVT 307

Query: 346 WGALLYGASISGDVE 360
           W  ++ G   SG +E
Sbjct: 308 WNCMISGYVQSGLME 322



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 126/285 (44%), Gaps = 34/285 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +  I  WNS+I+ + + G   +  A + +ML   V  PD  T   +++AC        
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV-SPDVSTFPCLVKAC-------- 148

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYM 119
            + + NF                         +D+    +  +  D +E   S++I  Y+
Sbjct: 149 -VALKNF-----------------------KGIDFLSDTVSSLGMDCNEFVASSLIKAYL 184

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G ++    LF  + +     WN +++G  +    ++V+     M+   + PNAVT   
Sbjct: 185 EYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDC 244

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S+ +    +  G ++HG  V +  D    +  +++  Y+K G    A ++F       
Sbjct: 245 VLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRAD 304

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
            + W  +IS Y   G   ++++ F EM+++G+ PD +TF+++L +
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 259/470 (55%), Gaps = 37/470 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R IV+WNSM++GY++ G ++E   LFR++L   +   D VT++SVL ACG+ +++  
Sbjct: 182 MPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRI-EFDDVTMISVLMACGRLANLEI 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  +++   ++ +  +  +LI MYAKCG +D AR L                     
Sbjct: 241 GELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKL--------------------- 279

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                     F  M +  +  W+A+ISG  Q +R +  L+L  EMQ   V PN VT+ S+
Sbjct: 280 ----------FDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSV 329

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +     + GK +H Y  K +    + + T +ID YAK G++  +  VF     +++
Sbjct: 330 LYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNV 389

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTA+I   A +G+   A+  F+ ML N ++P+ VTF  VLSAC+H+ LVD+   +FN+
Sbjct: 390 FTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNS 449

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I+P +EHY CMV +L RA  + EA +F+  MP  P+A VW  LL       ++E
Sbjct: 450 MRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIE 509

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   +H+  +EP ++G+YI+++N Y+  GR ++A RVR  +KE  + KIPG S IE  
Sbjct: 510 MAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELD 569

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLD-----EVEEES 465
           G +  F ++D     S++I+  L++++  ++  GYV        E EEES
Sbjct: 570 GVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEES 619



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 197/437 (45%), Gaps = 79/437 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K +  ++N MI G +     +    LF++M    V + D  T  SVL+AC +   +  
Sbjct: 81  IDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSV-QHDKFTFSSVLKACSRMKALRE 139

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  +++S  K + ++ N LI MYA CG +  AR + D M ++  V++++++SGY  
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G                   W+ V+              L R++    +  + VT+ S+
Sbjct: 200 NGL------------------WDEVVK-------------LFRKILELRIEFDDVTMISV 228

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  +NL+ G+ I  Y V     RN  + T++ID YAK G +  A+++FD    R +
Sbjct: 229 LMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDV 288

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           + W+A+IS YA      +A++LF+EM    + P+ VT  +VL +C               
Sbjct: 289 VAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFY 348

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                               A  G +D++ ++F  MS +     +V  +  ++  L+   
Sbjct: 349 IKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFK-----NVFTWTALIQGLANNG 403

Query: 326 RISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
               A EF S M    VKP+   +  +L   S +  V+ G+ + + +   F+IEP    +
Sbjct: 404 EGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPR-IEH 462

Query: 380 YIIMANLYSQAGRWDEA 396
           Y  M ++  +AG  +EA
Sbjct: 463 YGCMVDILGRAGFLEEA 479



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 52/349 (14%)

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
            R LLD +  +  +  +A+    ++   ++ A+ +F  + +P  S +N +I GL      
Sbjct: 47  TRRLLDPIITEAVLESAAL----LLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSP 102

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
           +  L L ++M    V+ +  T SS+    S    L+ G+++H   +K+ +  N +V   +
Sbjct: 103 DNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTL 162

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           I  YA  G +  A+ VFD    RS++ W +++S Y  +G   + V LF ++L   I+ D 
Sbjct: 163 IQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDD 222

Query: 276 VTFTAVLSAC-----------------------------------AHSGLVDKAWDIFNA 300
           VT  +VL AC                                   A  G VD A  +F+ 
Sbjct: 223 VTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDE 282

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M  +      V  ++ M+   ++A R  EA     +M    V P+     ++LY  ++ G
Sbjct: 283 MDKR-----DVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337

Query: 358 DVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQM 403
             E GK+V  ++ + + + T   G  +I  + Y++ G  D +  V ++M
Sbjct: 338 AYETGKWVHFYIKKKKMKLTVTLGTQLI--DFYAKCGYIDRSVEVFKEM 384


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 259/464 (55%), Gaps = 39/464 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-------NSPVLRPDGVTVVSVLQACG 53
           +S R+IVSW SMI GY Q         LF+E L           +  D + +VSVL AC 
Sbjct: 213 ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272

Query: 54  QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
           + S+      VH F+I+   + DL + N L+  YAKCG L  +R + D M+++D +S   
Sbjct: 273 RVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVIS--- 329

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRP 172
                                       WN++I+   QN      +++   M   G +  
Sbjct: 330 ----------------------------WNSIIAVYAQNGMSTESMEIFHRMVKDGEINY 361

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           NAVT+S++    +H  + + GK IH   +K   + N++V T+IID Y K G +  A++ F
Sbjct: 362 NAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAF 421

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           DR + +++  W+A+++ Y  HG A +A+ +F EM   G++P+ +TF +VL+AC+H+GL++
Sbjct: 422 DRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLE 481

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + W  F AMS ++ ++P VEHY CMV +L RA  + EA + +  M ++P   VWGALL  
Sbjct: 482 EGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 541

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             +  +V+LG+     LFE++P+N G Y++++N+Y+ AGRW++ +R+R  MK SGL K P
Sbjct: 542 CRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPP 601

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G S ++  G +  F+  D    + E+IY  LE+L   ++E GYV
Sbjct: 602 GFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 645



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 178/366 (48%), Gaps = 43/366 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K ++ SWNS+IA  ++ G   E    F  M     L+P+  T    +++C    D+  
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSM-RKLSLKPNRSTFPCAIKSCSALLDLHS 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   +    + DL++ +AL+ MY+KCG L  AR L DE+S ++ VS          
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS---------- 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE--MQASG------VRP 172
                                W ++I+G VQN+     L L +E  ++ SG      V  
Sbjct: 221 ---------------------WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCV 259

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           + + + S+ S  S  S     + +HG+ +K  ++ ++ V   ++D YAK G L  ++RVF
Sbjct: 260 DPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLV 291
           D    R +I W +II+ YA +G +++++ +F+ M+ +G I  + VT +AVL ACAHSG  
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG-S 378

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
            +     +    + G++ +V     ++ +  +  ++  A +   +M  K + K W A++ 
Sbjct: 379 QRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK-NVKSWSAMVA 437

Query: 352 GASISG 357
           G  + G
Sbjct: 438 GYGMHG 443



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 147/328 (44%), Gaps = 63/328 (19%)

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN+VI+ L ++      L     M+   ++PN  T        S   +L  G++ H  A
Sbjct: 119 SWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQA 178

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +   ++ +++V++A++D Y+K G L  A+ +FD    R+++ WT++I+ Y  + DA +A+
Sbjct: 179 LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 238

Query: 261 SLFNEML--------NNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDIFNAM 301
            LF E L        +  +  DP+   +VLSAC+           H  L+ + ++     
Sbjct: 239 LLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFE----- 293

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRI-------------------------SEATEFVSK 336
            G  G++ ++       G L  +RR+                         +E+ E   +
Sbjct: 294 -GDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHR 352

Query: 337 M----PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQ 389
           M     +  +A    A+L   + SG   LGK + D + ++  E+    G  II  ++Y +
Sbjct: 353 MVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII--DMYCK 410

Query: 390 AGRWDEA----DRVREQMKESGLAKIPG 413
            G+ + A    DR+RE+  +S  A + G
Sbjct: 411 CGKVEMARKAFDRMREKNVKSWSAMVAG 438


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 258/469 (55%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K ++  WN +I  Y+  G +E   +L+ +ML    L+PD  T+  VL+AC   S I  
Sbjct: 119 IPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG-LKPDNFTLPFVLKACSALSTIGE 177

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  VI S  + D+++  AL+ MYAKCG +  AR + D++ D+D V           
Sbjct: 178 GRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAV----------- 226

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++   QN   +  L L  EM A GVRP   T+ ++
Sbjct: 227 --------------------LWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTV 266

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L  G+EIHG+  ++ +  N  V TA+ID YAK G +  A  +F+R + + +
Sbjct: 267 ISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRV 326

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W AII+ YA HG A +A+ LF  M+    QPD +TF   L+AC+   L+D+   ++N 
Sbjct: 327 VSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNL 385

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M     I P+VEHY CMV +L    ++ EA + + +M V P + VWGALL      G+VE
Sbjct: 386 MVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVE 445

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + L E+EP+++GNY+I+AN+Y+Q+G+W+   R+R+ M + G+ K    SWIE  
Sbjct: 446 LAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVK 505

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F++ D S   S  IY  L+RL GLMRE GYV     +  +VEE+
Sbjct: 506 NKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEED 554



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 141/311 (45%), Gaps = 33/311 (10%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+L++C  +  +  G ++H  + +  I  +L +   L+  Y+ C SL  A  L D++   
Sbjct: 63  SLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP-- 120

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
                                        +  L  WN +I     N  HE  + L  +M 
Sbjct: 121 -----------------------------KGNLFLWNVLIRAYAWNGPHETAISLYHQML 151

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G++P+  T+  +    S  S +  G+ IH   +++ ++R+++V  A++D YAK G + 
Sbjct: 152 EYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVV 211

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ VFD+   R  ++W ++++AYA +G   +++SL  EM   G++P   T   V+S+ A
Sbjct: 212 DARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSA 271

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
               +    +I +    ++G Q + +    ++ + ++   +  A     ++  K     W
Sbjct: 272 DIACLPHGREI-HGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVS-W 329

Query: 347 GALLYGASISG 357
            A++ G ++ G
Sbjct: 330 NAIITGYAMHG 340


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 249/469 (53%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K D+VS+N++I+G+S  G  E     FRE+L S   R    T+V ++        +  
Sbjct: 265 IRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ-RVSSSTMVGLIPVSSPFGHLHL 323

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +  F ++S   +   +  AL  +Y++   +D AR L DE S+K              
Sbjct: 324 ACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKT------------- 370

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             ++ WNA+ISG  Q+   E  + L +EM  +   PN VTI+SI
Sbjct: 371 ------------------VAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSI 412

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK +H        ++NIYV+TA+ID YAK G +  A ++FD    ++ 
Sbjct: 413 LSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNT 472

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  Y  HG   +A+ LFNEML+ G QP  VTF +VL AC+H+GLV +  +IF+A
Sbjct: 473 VTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHA 532

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P  EHYACMV +L RA ++ +A EF+ KMPV+P   VWG LL    I  D  
Sbjct: 533 MVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTN 592

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LFE++P N G Y++++N+YS    + +A  VRE +K+  L+K PG + IE +
Sbjct: 593 LARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVN 652

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           G    FV  D S  ++  IY  LE L G MRE GY       L +VEEE
Sbjct: 653 GTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEE 701



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 168/357 (47%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V WN+MI G  +   Y++   +F++M+   V R D  TV +VL A  +  ++  
Sbjct: 164 MPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGV-RLDSTTVATVLPAVAEMQEVKV 222

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +    ++     D ++   LI +++KC  +D AR L                     
Sbjct: 223 GMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLL--------------------- 261

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                     F ++++P L ++NA+ISG   N   E  +   RE+  SG R ++ T+  +
Sbjct: 262 ----------FGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGL 311

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + S F +L     I G+ VK+       V+TA+   Y++   +  A+++FD    +++
Sbjct: 312 IPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTV 371

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+IS YA  G    A+SLF EM+     P+PVT T++LSACA  G +     +   
Sbjct: 372 AAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQL 431

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +  +  ++ ++     ++ + ++   ISEA++       K +   W  +++G  + G
Sbjct: 432 IKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTV-TWNTMIFGYGLHG 486



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 184/419 (43%), Gaps = 54/419 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           + K DI  +N +I G+S   F  +  ++  +  +L +  L PD  T    + A   S D 
Sbjct: 66  VPKPDIFLFNVLIKGFS---FSPDASSISFYTHLLKNTTLSPDNFTYAFAISA---SPDD 119

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             GM +H   +      +L++ +AL+ +Y K   + YAR + D+M D+D V         
Sbjct: 120 NLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTV--------- 170

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  WN +I+GLV+N  ++  + + ++M A GVR ++ T++
Sbjct: 171 ----------------------LWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVA 208

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++    +    +K G  I   A+K  +  + YV T +I  ++K   +  A+ +F   +  
Sbjct: 209 TVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKP 268

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI- 297
            L+ + A+IS ++ +G+   AV  F E+L +G +    T   ++   +  G +  A  I 
Sbjct: 269 DLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQ 328

Query: 298 -FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F   SG   +QPSV     +  + SR   I  A +   +   K  A  W A++ G + S
Sbjct: 329 GFCVKSGTI-LQPSVS--TALTTIYSRLNEIDLARQLFDESSEKTVA-AWNAMISGYAQS 384

Query: 357 GDVELGKFVCDHLFE--IEPENTGNYIIMANLYS---QAGRWDEADRVREQMKESGLAK 410
           G  E+       LF+  +  E T N + + ++ S   Q G       V + +K   L +
Sbjct: 385 GLTEMAI----SLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQ 439



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 5/239 (2%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G    A  LF  + +P +  +N +I G   +    ++      ++ + + P+  T +   
Sbjct: 54  GATRHARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAI 113

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  S   NL  G  +H +AV + +D N++VA+A++D Y K   +  A++VFD+   R  +
Sbjct: 114 SA-SPDDNL--GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTV 170

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +W  +I+    +     +V +F +M+  G++ D  T   VL A A    V     I   +
Sbjct: 171 LWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGI-QCL 229

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           + + G          ++ V S+   +  A   +  M  KP    + AL+ G S +G+ E
Sbjct: 230 ALKLGFHFDDYVLTGLISVFSKCEDVDTA-RLLFGMIRKPDLVSYNALISGFSCNGETE 287



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 27/189 (14%)

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           ++ +++ +L S         E H   ++N Y  ++   T +       G    A+ +F  
Sbjct: 6   ISRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFS 65

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSA--------C 285
                + ++  +I  ++   DAS ++S +  +L N  + PD  T+   +SA        C
Sbjct: 66  VPKPDIFLFNVLIKGFSFSPDAS-SISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMC 124

Query: 286 AHSGLVDKAWD--IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            H+  V   +D  +F A              + +V +  +  R++ A +   KMP + + 
Sbjct: 125 LHAHAVVDGFDSNLFVA--------------SALVDLYCKFSRVAYARKVFDKMPDRDTV 170

Query: 344 KVWGALLYG 352
            +W  ++ G
Sbjct: 171 -LWNTMITG 178


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 247/446 (55%), Gaps = 1/446 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R++VSWN+MI GY+Q G   E  ALF EM +  +L  D  T+VS+L AC    ++  
Sbjct: 175 MADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLL-ADVFTLVSLLFACSSEGNLEV 233

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ S  ++D  + NAL+ MY KCG L  A    D M  K+ V++++++     
Sbjct: 234 GRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAK 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V+   D F+ M    + +WNA+IS  VQ  R    LDL   M++ G+ P+  T++ +
Sbjct: 294 HGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGV 353

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  GK IH Y   N  D  + +  +++D YA+ G +  A  +F     +++
Sbjct: 354 LSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNV 413

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  II A A HG A + V+ F  M+++   PD +TF  +LSAC+H GL++     F A
Sbjct: 414 ISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEA 473

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y ++P VEHY CMV +L R   +++A   +  M +KP   VWGALL    I G+VE
Sbjct: 474 MARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVE 533

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK V   L E+E    G ++++ NL+ +  +W++  ++R+ MKE G  K  G S IE  
Sbjct: 534 IGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVK 593

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
             +  F  +D   + + +IY  +++L
Sbjct: 594 NIIHEFGVEDLRHESTNEIYAAVDQL 619



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 187/448 (41%), Gaps = 64/448 (14%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   +N+++  YS     +E   L R +L   +L P+  T+  VL+AC     +   +  
Sbjct: 78  DRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGIL-PNEFTLPFVLKACTTVRAVEHALAA 136

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++      +++ NAL+  +A  GSL  +R    EM+D++ VS++ +I GY   G V
Sbjct: 137 HGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEV 196

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSI 180
            +A  LF  M+  GL      +  L+     E  L++ R     M  SG R + +  +++
Sbjct: 197 SEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNAL 256

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
             ++    +L        +     +D    +N+   T+++   AK G +   +  F++  
Sbjct: 257 LDMYGKCGDL--------WMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMP 308

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC----------- 285
            R+++ W A+IS Y   G   + + L+N M + GI PD  T   VLSAC           
Sbjct: 309 ERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKM 368

Query: 286 ------------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
                                   A  G VD A  +F  M  +  I  +V     ++G L
Sbjct: 369 IHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNV-----IIGAL 423

Query: 322 SRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCD---HLFEIEPE 375
           +   R  E   F   M      P    +  LL   S  G +E G++  +    ++ +EPE
Sbjct: 424 AMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPE 483

Query: 376 NTGNYIIMANLYSQAGRWDEADRVREQM 403
              +Y  M +L  + G   +A  + + M
Sbjct: 484 -VEHYGCMVDLLGRRGHLAKAVNLIKDM 510



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 130/301 (43%), Gaps = 8/301 (2%)

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           SY  + +G    G    A  LF  +  P    +N ++     ++  +  L L R +   G
Sbjct: 51  SYCTLSAGDRDGGLCH-ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRG 109

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           + PN  T+  +    +    ++     HG  VK  + + I+VA A++  +A  G L  ++
Sbjct: 110 ILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSR 169

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           R F     R+++ W  +I  YA  G+ S+A +LF EM + G+  D  T  ++L AC+  G
Sbjct: 170 RFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEG 229

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            ++    +   M         +   A ++ +  +   +  A      MP+K +   W ++
Sbjct: 230 NLEVGRLVHCHMLVSGSRVDRILGNA-LLDMYGKCGDLWMAHRCFDMMPIK-NVVTWTSM 287

Query: 350 LYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           L   +  G V+  +      FE  PE N  ++  M + Y Q GR  E   +  +M+  G+
Sbjct: 288 LCAQAKHGSVDAVR----DWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGI 343

Query: 409 A 409
            
Sbjct: 344 T 344



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 40/239 (16%)

Query: 172 PNAVTISS-IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA------KTGF 224
           P AV  S  +  L     +++   +IH + V + +     VA+ +I +Y       + G 
Sbjct: 4   PAAVVASRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGG 63

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A+R+FDR       ++  ++ AY+      +A+ L   +L  GI P+  T   VL A
Sbjct: 64  LCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKA 123

Query: 285 C----------AHSGLVDK-----------AWDIFNAMSGQ-------YG--IQPSVEHY 314
           C          A  G+V K           A   F+A +G        +G     +V  +
Sbjct: 124 CTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSW 183

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKP-SAKVWG--ALLYGASISGDVELGKFVCDHLF 370
             M+G  ++A  +SEA     +M  +   A V+   +LL+  S  G++E+G+ V  H+ 
Sbjct: 184 NTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHML 242


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 278/488 (56%), Gaps = 44/488 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL-FREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M ++D+V+WN +I+GY Q G  E  KAL    ++    LR D VT+ +++ A     ++ 
Sbjct: 261 MLEKDVVTWNLLISGYVQIG--EVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLK 318

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD------------ 107
            G E H + I ++++ D+ + ++++ MYAKC  +  AR + +    KD            
Sbjct: 319 LGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFA 378

Query: 108 -----------------------EVSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLS 140
                                   +S++++I G++  G V +A D+F  M+    +P L 
Sbjct: 379 ELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLV 438

Query: 141 TWNAVISGLVQNN-RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
           TW  +ISGL ++   +EA+L   R MQ +GV+PN V+I  +     + ++L+ G+ +HGY
Sbjct: 439 TWTTLISGLARSGFGYEAILTFQR-MQEAGVKPNVVSIIGVLLACINLASLQIGRALHGY 497

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            +++    +I +AT+++D YAK G    A+RVFD    + L I+ A+IS +A HG A +A
Sbjct: 498 LIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEA 557

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           ++L+  +   G++PD +TFT  L AC+H+ +V +  ++F  M   + I PS+EHY CMV 
Sbjct: 558 LALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVS 617

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           +LSR   + EA   +S MP KP  ++ G+LL        +EL +++ + L +++P+N+GN
Sbjct: 618 LLSRCGDLDEAFGLISAMPYKPDVQILGSLLAACREHNKIELEEYLSNQLLKLQPDNSGN 677

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQI 439
           Y+ M+N Y+ AGRWDE  +VR+ MKE GL KIPG SWI+    L  FVA D S  ++E+I
Sbjct: 678 YVAMSNAYAAAGRWDEVKKVRQLMKERGLRKIPGCSWIQVGEELNVFVAGDKSHPETEEI 737

Query: 440 YLILERLL 447
           Y  L  LL
Sbjct: 738 YTTLALLL 745



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 203/416 (48%), Gaps = 45/416 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V+WNSMI GY Q G  EE   +F EM    V  P  VT+ S L A      +  
Sbjct: 160 MPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGV-EPTQVTLSSFLSASANLGALQD 218

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   +   I+M   + ++LI  Y+K G                             
Sbjct: 219 GKQGHAIAVICGIEMTTNLGSSLINFYSKVG----------------------------- 249

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +E A  +F  M    + TWN +ISG VQ    +  L++   M+   +R ++VT++++
Sbjct: 250 --LIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATL 307

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S F+   NLK GKE H Y ++N  + ++ V ++I+D YAK   +  A+RVF+    + L
Sbjct: 308 MSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDL 367

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++A+A  G + +A++LF +M    + P+ +++ +++    +SG V++A D+F  
Sbjct: 368 ILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQ 427

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPS-AKVWGALLYGASIS 356
           M    G+QP++  +  ++  L+R+    EA     +M    VKP+   + G LL   +++
Sbjct: 428 MQ-SLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLA 486

Query: 357 ----GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
               G    G  +   L+   P  T     + ++Y++ G  D+A RV + + +  L
Sbjct: 487 SLQIGRALHGYLIRHSLYLSIPIATS----LVDMYAKCGDRDQAKRVFDMIPDKEL 538



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 130/283 (45%), Gaps = 46/283 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++ SW ++I    + GFY+E    F+EM  + +L PD   + +VL+ACG    I  G  
Sbjct: 76  KNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLL-PDNFVLPNVLKACGGLEWIRIGKV 134

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V   ++    W          K       +  +  M  ++ V+++++I GY+ +G 
Sbjct: 135 VHGLVSCGYV----W----------KMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGL 180

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A+++F                                EM+  GV P  VT+SS  S 
Sbjct: 181 NEEAIEVFY-------------------------------EMREEGVEPTQVTLSSFLSA 209

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   L+ GK+ H  AV    +    + +++I+ Y+K G +  A+ VF R   + ++ W
Sbjct: 210 SANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTW 269

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +IS Y   G+  KA+++ + M    ++ D VT   ++SA A
Sbjct: 270 NLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFA 312



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 134/328 (40%), Gaps = 50/328 (15%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C     +  G ++H  +++  +   M+ +I   L+  YAKC + + + +L   +  
Sbjct: 16  LLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRL 75

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K+  S++A+I      GF ++A+  F                               +EM
Sbjct: 76  KNVFSWAAVIGLNCRKGFYQEALLGF-------------------------------KEM 104

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q +G+ P+   + ++         ++ GK +HG  V   Y   ++               
Sbjct: 105 QENGLLPDNFVLPNVLKACGGLEWIRIGKVVHGL-VSCGYVWKMWGGGGCKKGVCG---- 159

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
                       R+ + W ++I  Y  +G   +A+ +F EM   G++P  VT ++ LSA 
Sbjct: 160 ---------MPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSAS 210

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A+ G +       +A++   GI+ +    + ++   S+   I +A    S+M ++     
Sbjct: 211 ANLGALQDGKQ-GHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRM-LEKDVVT 268

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIE 373
           W  L+ G    G+V+    +C HL  +E
Sbjct: 269 WNLLISGYVQIGEVDKALNMC-HLMRLE 295


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 258/473 (54%), Gaps = 47/473 (9%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S RD+VSWN+MI GY + G     + +F  M+   V+                       
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVIS---------------------- 99

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
                           W  N +I  YA  G +D A+ L DEM +++ VS+++++SG++  
Sbjct: 100 ----------------W--NTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKC 141

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G VE+A  LF  M    + +WN++++   Q  +    L L  +M+A GV+P   T+ S+ 
Sbjct: 142 GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 201

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +H   L  G  +H Y   NR + N  V TA++D YAK G +  A +VF+  + + ++
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  II+  A HG   +A  LF EM    ++P+ +TF A+LSAC+H+G+VD+   + + M
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 321

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S  YGI+P VEHY C++ +L+RA  + EA E +  MP++P+    GALL G  I G+ EL
Sbjct: 322 SSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFEL 381

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ V   L  ++P ++G YI+++N+Y+ A +WD+A +VR  MK +G++K+PG S IE  G
Sbjct: 382 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 441

Query: 422 GLQSFVAKDTSGDKSEQIYLILERL-------LGLMREEGYVLLDEVEEESAY 467
            +  FVA D S  +S +IY  L  +       +G   + G VLLD  EE+  +
Sbjct: 442 MVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEH 494



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 41/237 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNSM+A Y+Q G   E  ALF +M    V +P   TVVS+L AC     +  
Sbjct: 154 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV-KPTEATVVSLLSACAHLGALDK 212

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H ++ ++ I+++  +  AL+ MYAKCG +  A  + + M  KD ++++ II+G  +
Sbjct: 213 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 272

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V++A  LF                               +EM+ + V PN +T  ++
Sbjct: 273 HGHVKEAQQLF-------------------------------KEMKEASVEPNDITFVAM 301

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            S  SH   +  G+++       Y ++ + +        +ID  A+ G L  A  + 
Sbjct: 302 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH----YDCVIDLLARAGLLEEAMELI 354


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 265/463 (57%), Gaps = 12/463 (2%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF- 60
           ++ D V+W ++++ +++ G + +   LF EM  S     +  ++   L AC  + D+   
Sbjct: 106 TRPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGC-EGNAESMAVALSACPYAGDLALA 164

Query: 61  -GMEVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            G  +H   V++  +   L++ N+LI MY K G +D A+    + + K+ V+++ +I+ Y
Sbjct: 165 KGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSY 224

Query: 119 MVHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
              G  ++A+D+   M++      P + +W+AVI G   +   +  L+L R MQ   + P
Sbjct: 225 AAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSP 284

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N VT++++ S       L+ G+E+HG+A+K   DR+  V   +I+ YAK G + GA++VF
Sbjct: 285 NVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVF 344

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D  K R LI W ++++ Y  HG   +A++LF +M    ++PD VTF AVLSAC H+G V 
Sbjct: 345 DGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVT 404

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +   +F+ M   + I PS+EHY CMV +L RA  + +A+E V  MPV+P   VWGALL  
Sbjct: 405 EGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNS 464

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             I GD  + +    ++ + E ++TGN++++ NLY+  G WDE+ +VR   KE+GL K P
Sbjct: 465 CRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNP 524

Query: 413 GRSWIECSGGLQSFVAKDTSGD--KSEQIYLILERLLGLMREE 453
           G+SWIE    + +F A     +   +E ++ +L+ L   M +E
Sbjct: 525 GQSWIEVDNKVVAFAAGSAPPNLTGAEDVFGMLDDLYAEMEDE 567



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 44/240 (18%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST--WNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           I++ Y   G    A  +F  M  PG +T  WNA+IS        +A  D    M A+G R
Sbjct: 49  ILAAYSRLGRAADARRVFDAMP-PGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTR 107

Query: 172 PNAVTISSIFS-------------LFSHFSN------------------------LKGGK 194
           P+AVT +++ S             LF                             L  GK
Sbjct: 108 PDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGK 167

Query: 195 EIHGYA-VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
            IHG   VK      ++V  ++I  Y K G +  A++ F     ++ + W  +I++YAA 
Sbjct: 168 AIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAA 227

Query: 254 GDASKAVSLFNEM--LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
           G   +A+ +  +M  +   + P+ V+++AV+   A SG  D+A ++F  M  Q+ + P+V
Sbjct: 228 GLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQW-LSPNV 286



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 7/126 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWNSM+AGY   G  +E  ALF +M  + V  PDGVT V+VL ACG +  +  
Sbjct: 347 MKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATV-EPDGVTFVAVLSACGHAGRVTE 405

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G  + + ++ +H     M+ + C  ++ +  + G L  A  L++ M  + ++  + A+++
Sbjct: 406 GRRLFDRMVRAHKISPSMEHYTC--MVYLLGRAGLLRDASELVETMPVRPDLCVWGALLN 463

Query: 117 GYMVHG 122
              +HG
Sbjct: 464 SCRIHG 469



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 108/257 (42%), Gaps = 22/257 (8%)

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHG 254
           +H +A+         VA  I+  Y++ G    A+RVFD    GR+   W A+ISAY++  
Sbjct: 30  VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
           D   A   F  M   G +PD VT+TA+LSA A SG       +F  M  + G + + E  
Sbjct: 90  DPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQ-RSGCEGNAESM 148

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG------ASISGDVELGKF--VC 366
           A  +     A  ++     ++K        V   L++G      + I    +LG+     
Sbjct: 149 AVALSACPYAGDLA-----LAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAK 203

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG-RSWIECSGGLQS 425
               +   +NT  +  +   Y+ AG  DEA  V  QM++ G    P   SW    GG  S
Sbjct: 204 KAFRDATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFAS 263

Query: 426 FVAKDTSGDKSEQIYLI 442
                 SGD    + L 
Sbjct: 264 ------SGDTDRALELF 274


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 258/470 (54%), Gaps = 38/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN+++ GY+Q     +   L+ +M +S  L PD  T+ S+L AC +   + +
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSLHY 328

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H F + + + +D +I  +L+ +Y  CG    A+ L D M  +  VS          
Sbjct: 329 GEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS---------- 378

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I+G  QN   +  ++L R+M + G++P  + I  +
Sbjct: 379 ---------------------WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCV 417

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S L+ GKE+H +A+K     +I+V+++IID YAK G +  +QR+FDR + + +
Sbjct: 418 CGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV 477

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  II+ Y  HG   +A+ LF +ML  G++PD  TFT +L AC+H+GLV+   + FN 
Sbjct: 478 ASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQ 537

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I+P +EHY C+V +L RA RI +A   + +MP  P +++W +LL    I G++ 
Sbjct: 538 MLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLG 597

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V + L E+EPE   NY++++NL++ +G+WD+  RVR +MK+ GL K  G SWIE  
Sbjct: 598 LGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVG 657

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEE 464
           G + +F+  D    + E++     RL      +G   + G VL D  EE+
Sbjct: 658 GKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEED 707



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 209/440 (47%), Gaps = 69/440 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++  WN++++ Y++   +E+  ++F E+++    +PD  T+  V++AC    D+  
Sbjct: 167 LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 226

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALLDEMSDKDEVSYSAIISGYM 119
           G  +H    +  +  D+++ NALI MY KCG ++ A + + D M  K   S++A++ GY 
Sbjct: 227 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +    KA+DL+                                +M  SG+ P+  TI S
Sbjct: 287 QNSDPRKALDLYL-------------------------------QMTDSGLDPDWFTIGS 315

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    S   +L  G+EIHG+A++N    + ++  +++  Y   G    AQ +FD  + RS
Sbjct: 316 LLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRS 375

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------- 292
           L+ W  +I+ Y+ +G   +A++LF +ML++GIQP  +    V  AC+    +        
Sbjct: 376 LVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHC 435

Query: 293 ---KAW---DIFNAMS--------GQYGI---------QPSVEHYACMV---GVLSRARR 326
              KA    DIF + S        G  G+         +  V  +  ++   G+  R + 
Sbjct: 436 FALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKE 495

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD---HLFEIEPENTGNYIIM 383
             E  E + ++ +KP    +  +L   S +G VE G    +   +L  IEP+   +Y  +
Sbjct: 496 ALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPK-LEHYTCV 554

Query: 384 ANLYSQAGRWDEADRVREQM 403
            ++  +AGR D+A R+ E+M
Sbjct: 555 VDMLGRAGRIDDALRLIEEM 574



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 32/241 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA-LIGMYAKCGSLDYARALLDEMSDK 106
           +LQACGQ  DI  G  +H  V  S    + ++ N  +I MY+ CGS   +R + D++  K
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           +   ++AI+S Y  +   E AM +F               S L+    H           
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIF---------------SELISVTEH----------- 204

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
               +P+  T+  +    +   +L  G+ IHG A K     +++V  A+I  Y K G + 
Sbjct: 205 ----KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 260

Query: 227 GA-QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            A +RVFD    +++  W A++  YA + D  KA+ L+ +M ++G+ PD  T  ++L AC
Sbjct: 261 EAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 320

Query: 286 A 286
           +
Sbjct: 321 S 321



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 14/213 (6%)

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY-AVKNRYDR 207
            +Q    + VLD  +  +A GV   A              +++ G+ +H   +   ++  
Sbjct: 89  FLQRESDDVVLDSAQRSEAMGVLLQAC---------GQRKDIEVGRRLHEMVSASTQFCN 139

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           +  + T II  Y+  G    ++ VFD+ + ++L  W AI+SAY  +     A+S+F+E++
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 268 N-NGIQPDPVTFTAVLSACAHSGLVDKAW-DIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           +    +PD  T   V+ ACA  GL+D     I + M+ +  +   V     ++ +  +  
Sbjct: 200 SVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            + EA + V  +    +   W ALL G + + D
Sbjct: 258 LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSD 290


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 266/469 (56%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +D+VSWNS+I+G+S+      C  L   M     L+P+ VTV+ V+ AC    ++  
Sbjct: 99  LPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDV 158

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   ++S + +++ + N+LI +Y KCG L+ A  L + MS +  VS++++++ ++ 
Sbjct: 159 GKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVH 218

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  EK +  F +M+R G+            N+    V+ L+   +  GVR         
Sbjct: 219 MGLAEKGIGYFIMMRRAGI------------NSDQATVVSLLLACENLGVR--------- 257

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                     K  + +HGY +    D N+ +ATA++D YAK G L  + +VF        
Sbjct: 258 ----------KLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDA 307

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA++S+YA HG   +A+  F  M+  G+ PD VTFT +LSAC+HSGLV++  + F  
Sbjct: 308 VAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKI 367

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++  VEHY+CMV +L R+  +++A + +  MP++P++ VWGAL+    + G++E
Sbjct: 368 MYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIE 427

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V + LF ++P ++ NYI ++N+YS AG+W +A +VR  MKE  L + PG S+IE  
Sbjct: 428 LGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHG 487

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  FV  D S   +EQIY  LE L+   RE G+      +L +V+EE
Sbjct: 488 NKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEE 536



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 157/367 (42%), Gaps = 48/367 (13%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI----ISGYMVHGFVEKAMDLFQVMKR 136
           +ALI   + C S+ Y RAL   +      ++  I    +S Y+  G  + A++LF  +  
Sbjct: 42  SALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPD 101

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKE 195
             L +WN++ISG  +       L L+  M+   G++PN VT+  + S  +    L  GK 
Sbjct: 102 KDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKC 161

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           IHG AVK+     + V  ++I+ Y K G L  A  +F+    +SL+ W ++++ +   G 
Sbjct: 162 IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGL 221

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-----WDIFNAMSGQYGIQPS 310
           A K +  F  M   GI  D  T  ++L AC + G+   A     + +   + G   I  +
Sbjct: 222 AEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATA 281

Query: 311 VEHYACMVGVLS----------------------------RARRISEATEFVSKMPVKPS 342
           +      +G LS                            R R   E  E + +  V P 
Sbjct: 282 LLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPD 341

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------NYIIMANLYSQAGRWDEA 396
              +  LL   S SG VE GK    + F+I  E  G      +Y  M +L  ++G  ++A
Sbjct: 342 HVTFTHLLSACSHSGLVEEGK----NYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDA 397

Query: 397 DRVREQM 403
            ++ + M
Sbjct: 398 YKLIKSM 404


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 258/470 (54%), Gaps = 38/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN+++ GY+Q     +   L+ +M +S  L PD  T+ S+L AC +   + +
Sbjct: 368 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSLHY 426

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H F + + + +D +I  +L+ +Y  CG    A+ L D M  +  VS          
Sbjct: 427 GEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS---------- 476

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I+G  QN   +  ++L R+M + G++P  + I  +
Sbjct: 477 ---------------------WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCV 515

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S L+ GKE+H +A+K     +I+V+++IID YAK G +  +QR+FDR + + +
Sbjct: 516 CGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV 575

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  II+ Y  HG   +A+ LF +ML  G++PD  TFT +L AC+H+GLV+   + FN 
Sbjct: 576 ASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQ 635

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I+P +EHY C+V +L RA RI +A   + +MP  P +++W +LL    I G++ 
Sbjct: 636 MLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLG 695

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V + L E+EPE   NY++++NL++ +G+WD+  RVR +MK+ GL K  G SWIE  
Sbjct: 696 LGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVG 755

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEE 464
           G + +F+  D    + E++     RL      +G   + G VL D  EE+
Sbjct: 756 GKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEED 805



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 134/512 (26%), Positives = 222/512 (43%), Gaps = 110/512 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIV 59
           M +R++VSWNS+I G+S+ GF +E    FREML       PD  T+V+VL  C    DI 
Sbjct: 162 MPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIE 221

Query: 60  FGMEVHNFVIESHIKMDLWI----------C---------------------NALIGMYA 88
            GM VH   ++  +  +L +          C                     N++IG YA
Sbjct: 222 KGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA 281

Query: 89  KCGSLDYARALLDEMSDKD----------------------------------------- 107
           +   +     LL +M  +D                                         
Sbjct: 282 REEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSN 341

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
           E+  +A I+ Y   G +  +  +F +M    +S+WNA++ G  QN+     LDL  +M  
Sbjct: 342 ELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD 401

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           SG+ P+  TI S+    S   +L  G+EIHG+A++N    + ++  +++  Y   G    
Sbjct: 402 SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA 461

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           AQ +FD  + RSL+ W  +I+ Y+ +G   +A++LF +ML++GIQP  +    V  AC+ 
Sbjct: 462 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 521

Query: 288 -SGL------------VDKAWDIFNAMS--------GQYGI---------QPSVEHYACM 317
            S L                 DIF + S        G  G+         +  V  +  +
Sbjct: 522 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVI 581

Query: 318 V---GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD---HLFE 371
           +   G+  R +   E  E + ++ +KP    +  +L   S +G VE G    +   +L  
Sbjct: 582 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 641

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           IEP+   +Y  + ++  +AGR D+A R+ E+M
Sbjct: 642 IEPK-LEHYTCVVDMLGRAGRIDDALRLIEEM 672



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 171/360 (47%), Gaps = 33/360 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++++  WN++++ Y++   +E+  ++F E+++    +PD  T+  V++AC    D+  
Sbjct: 60  LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 119

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H    +  +  D+++ NALI MY KCG ++ A  + + M +++ VS+++II G+  
Sbjct: 120 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSE 179

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF++++ + F+ M                          LV E       P+  T+ ++
Sbjct: 180 NGFLQESFNAFREM--------------------------LVGE---ESFVPDVATLVTV 210

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +   +++ G  +HG AVK   +  + V  ++ID Y+K  FL  AQ +FD+   +++
Sbjct: 211 LPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNI 270

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W ++I  YA   D  +   L  +M      ++ D  T   VL  C     +    ++ 
Sbjct: 271 VSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL- 329

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +  S ++G+Q +       +   +R   +  +      M  K +   W ALL G + + D
Sbjct: 330 HGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTK-TVSSWNALLCGYAQNSD 388



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 37/316 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA-LIGMYAKCGSLDYARALLDEMSDK 106
           +LQACGQ  DI  G  +H  V  S    + ++ N  +I MY+ CGS   +R + D++  K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM- 165
           +                      LFQ         WNA++S   +N   E  + +  E+ 
Sbjct: 64  N----------------------LFQ---------WNAIVSAYTRNELFEDAMSIFSELI 92

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +  +P+  T+  +    +   +L  G+ IHG A K     +++V  A+I  Y K G +
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLS 283
             A +VF+    R+L+ W +II  ++ +G   ++ + F EML       PD  T   VL 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            CA    ++K   + + ++ + G+   +     ++ + S+ R +SEA     K   K + 
Sbjct: 213 VCAGEEDIEKGMAV-HGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKND-KKNI 270

Query: 344 KVWGALLYGASISGDV 359
             W +++ G +   DV
Sbjct: 271 VSWNSMIGGYAREEDV 286


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 252/456 (55%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+VSW  +I GY+Q     E   L  +ML +   RP G T  S L+A G       
Sbjct: 123 IPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRAR-FRPSGFTFTSFLKAAGACGGRGI 181

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++ ++  D+++ +AL+ MYA+C  +D A  + D +  K+EVS          
Sbjct: 182 GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVS---------- 231

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E  L    EMQ +G      T SS+
Sbjct: 232 ---------------------WNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSV 270

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ G+ +H + +K+      +VA  I+  YAK+G +  A++VFDR   R L
Sbjct: 271 FSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDL 330

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++A+A +G   +AV+ F E+   GIQ + +TF +VL+AC+H GLV +    F+ 
Sbjct: 331 VTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDM 390

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P ++HY   V +L RA  + EA  FV KMP++P+A VWGALL    +  + +
Sbjct: 391 MK-DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAK 449

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G++  DH+FE++PE+TG  +++ N+Y+  G+WD+A RVR+ MK +G+ K P  SW+E  
Sbjct: 450 IGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIE 509

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D++  KSE+IY + E +   +++ GYV
Sbjct: 510 NSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYV 545



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 31/263 (11%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           ++L +  L P      S++ AC QS ++     +H+ +  S +  D ++ N+LI MY KC
Sbjct: 51  DLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKC 110

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G++  AR + D +  +D VS++ +I+GY                                
Sbjct: 111 GAVSDARHVFDGIPTRDVVSWTYLITGY-------------------------------A 139

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
           QN+     L L+ +M  +  RP+  T +S             G+++H  AVK   D ++Y
Sbjct: 140 QNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVY 199

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V +A++D YA+   +  A RVFD    ++ + W A+I+ +A  GD    +  F EM  NG
Sbjct: 200 VGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNG 259

Query: 271 IQPDPVTFTAVLSACAHSGLVDK 293
                 T+++V SA A  G +++
Sbjct: 260 FGATHFTYSSVFSALARIGALEQ 282


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 36/437 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+IVSW ++IAGY Q  +++E   +FREM+ S   +P+ VT+VSVL AC     +  
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT-QPNAVTLVSVLPACAGLEFLNL 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + I+  +  D+ + NALI +Y KCG+                            
Sbjct: 248 GKLIHGYGIKLGVDPDVSLTNALIALYGKCGN---------------------------- 279

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A  LF  M    L +WNA+I+   QNN     + L R MQA  V  + +T+ S+
Sbjct: 280 ---VETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSV 336

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+ +H    +   + N+ +  A+ID YAK G +  A+ VF+R   RS+
Sbjct: 337 ISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSV 396

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I A A+HG    A+ LF+ M + G++P+  TF AV +AC HSGLV++    F +
Sbjct: 397 VSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFES 456

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P VEH ACMV +L RA  + EA EF+ KMPV+P   VWGALL    I  ++E
Sbjct: 457 MMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLE 516

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V + LF ++P+    Y++M+N+Y++AGRW++A R+R+ M+E  L KIPG S +E +
Sbjct: 517 LAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576

Query: 421 GGLQSFVAKDTSGDKSE 437
               +F+    SG +S+
Sbjct: 577 RRFHTFL----SGSRSQ 589



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 36/361 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+  WN++I GY+  G  EE  AL+  M +   L PD  T   V+++C   S +  
Sbjct: 88  MPKRDVFLWNTLIRGYADAGPCEEALALYSNM-HGAGLFPDNYTFPFVVRSCAVLSALRE 146

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH  +++     D+++ ++L+ MY++ G       +  EM  ++ VS          
Sbjct: 147 GKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVS---------- 196

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W AVI+G VQN   +  L + REM  SG +PNAVT+ S+
Sbjct: 197 ---------------------WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSV 235

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L  GK IHGY +K   D ++ +  A+I  Y K G +  A+ +FD    ++L
Sbjct: 236 LPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNL 295

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFN 299
           + W A+I+AY  +   + AV LF  M    +  D +T  +V+SACA  G ++   W   +
Sbjct: 296 VSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRW--MH 353

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +  + G++ +V     ++ + ++   I  A E   ++P + S   W +++   +  G  
Sbjct: 354 ELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCR-SVVSWTSMIGACASHGHG 412

Query: 360 E 360
           E
Sbjct: 413 E 413



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 39/305 (12%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC--GSLDYARALLDEMSD 105
           +L  C    D+     +H  V+ +    +L +   LI + A C   ++DYAR + D+M  
Sbjct: 35  LLNCCSSLPDLS---RIHALVVTNGCGQNLLLSTKLI-ITACCLAPTMDYARKMFDQMPK 90

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +D                               +  WN +I G       E  L L   M
Sbjct: 91  RD-------------------------------VFLWNTLIRGYADAGPCEEALALYSNM 119

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +G+ P+  T   +    +  S L+ GKE+H   VK+ +D +++V ++++  Y+++G  
Sbjct: 120 HGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGET 179

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            G + VF     R+++ WTA+I+ Y  +    + + +F EM+ +G QP+ VT  +VL AC
Sbjct: 180 LGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPAC 239

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A    ++    + +    + G+ P V     ++ +  +   +  A      M V+     
Sbjct: 240 AGLEFLNLG-KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVS- 297

Query: 346 WGALL 350
           W A++
Sbjct: 298 WNAMI 302


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 254/456 (55%), Gaps = 31/456 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ + IV+WN+MI GYS      E  A  R+M     L PD +T++++L  C Q   I+ 
Sbjct: 288 ITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILL 347

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH F I +     L +  AL+ MY +CG L  A  L  +M++++ +S          
Sbjct: 348 GKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLIS---------- 397

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+   +N  +   + L +++    ++P+A TI+SI
Sbjct: 398 ---------------------WNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASI 436

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              ++  ++L+  ++IHGY  K + D N +V+ +I+  Y K G L  A+ +FDR   + +
Sbjct: 437 LPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDV 496

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  +I AYA HG    ++ LF+EM   G +P+  TF ++L +C+ +GLV++ W+ FN+
Sbjct: 497 ISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNS 556

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P +EHY C++ ++ R   +  A  F+ +MP+ P+A++WG+LL  +   GDVE
Sbjct: 557 MKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVE 616

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   +H+  +E +NTG Y++++N+Y++AGRW++ +R++  MK+ GL K  G S ++ S
Sbjct: 617 LAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLS 676

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
                FV +D S ++   +Y +L+ +   + E+ YV
Sbjct: 677 SKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYV 712



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 212/450 (47%), Gaps = 70/450 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNSMI+GY   G      + FREM  S + + D  +V+ +L AC     +  
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGI-KLDRFSVIGILGACSLEGFLRN 245

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  ++ S +++D+ +  +L+ MYAKCG +DYA  L D+++DK  V+++A+I GY +
Sbjct: 246 GKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSL 305

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISS 179
           +    ++ + F                              VR+MQ  G + P+ +T+ +
Sbjct: 306 NA---QSFESFA----------------------------YVRKMQEGGKLHPDWITMIN 334

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    +    +  GK +HG+A++N +  ++ + TA++D Y + G L  A+ +F +   R+
Sbjct: 335 LLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERN 394

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           LI W A+I++Y  +G+  KA++LF ++ N  ++PD  T  ++L A A    + +A  I  
Sbjct: 395 LISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHG 454

Query: 300 -----AMSGQYGIQPSVEHYACMVGVLSRARRISE------------------------- 329
                 +     +  S+       G L RAR I +                         
Sbjct: 455 YVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRI 514

Query: 330 ATEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
           + E  S+M  K   P+   + +LL   S++G V  G    + +   + I P    +Y  +
Sbjct: 515 SIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINP-GIEHYGCI 573

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +L  + G  D A    E+M  +  A+I G
Sbjct: 574 LDLIGRTGNLDHAKNFIEEMPLAPTARIWG 603



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 33/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D   WN MI G+   G + +    +  M    V R D  T   V++ACG   D+  
Sbjct: 86  MRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGV-RGDNFTYPFVIKACGGLYDLAE 144

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  VI+S + +D++I N+LI MYAK G ++ A  +  EM  +D VS          
Sbjct: 145 GERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVS---------- 194

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISG V        L   REMQASG++ +  ++  I
Sbjct: 195 ---------------------WNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGI 233

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    L+ GKEIH   +++R + ++ V T+++D YAK G +  A+R+FD+   +S+
Sbjct: 234 LGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSI 293

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAH 287
           + W A+I  Y+ +  + ++ +   +M   G + PD +T   +L  CA 
Sbjct: 294 VAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQ 341



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 127/255 (49%), Gaps = 2/255 (0%)

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           + +++ VS +  +S Y+  G+++ A+DLF+ M++     WN +I G V N      +D  
Sbjct: 55  LVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFY 114

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
             M+  GVR +  T   +        +L  G+ +HG  +K+  D +IY+  ++I  YAK 
Sbjct: 115 HRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKI 174

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G +  A+ VF     R L+ W ++IS Y + GD  +++S F EM  +GI+ D  +   +L
Sbjct: 175 GCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGIL 234

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
            AC+  G +    +I   M  +  ++  V     +V + ++  R+  A     ++  K S
Sbjct: 235 GACSLEGFLRNGKEIHCQMM-RSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDK-S 292

Query: 343 AKVWGALLYGASISG 357
              W A++ G S++ 
Sbjct: 293 IVAWNAMIGGYSLNA 307


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 266/507 (52%), Gaps = 44/507 (8%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVF 60
           S+   V +N +I   +    + +   LF  M    P   PD  T    L++C  S D++ 
Sbjct: 82  SRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLL 141

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H+ V +  +  ++++ ++ I MY++CG  + A  + D M  +D VS++A+I+G+  
Sbjct: 142 GLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFAR 201

Query: 121 HGFVEKAMDLFQV--------------------------------------MKRPGLSTW 142
            G  ++A+++F+                                       M+   L +W
Sbjct: 202 VGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISW 261

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           NA+++    N  H   ++L   M+   V P+++T++++       S    GK IH    +
Sbjct: 262 NAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKR 321

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
                N+ +  A++D YA  G L  A+ +FD    R +I WT+IISAY  HG   +AV L
Sbjct: 322 KNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDL 381

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
           F +ML  G++PD + F AVL+AC+H+GL+      F++M+ +Y I P  EHY CMV +L 
Sbjct: 382 FEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLG 441

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382
           RA  I+EA +F++ M ++P+ +VWGALL    I  ++++G    D+LF + PE TG Y++
Sbjct: 442 RAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVL 501

Query: 383 MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLI 442
           ++N+Y++AGRW +   VR  M   G+ K PG S +E    + +F   D    +SE IY  
Sbjct: 502 LSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHK 561

Query: 443 LERLLGLMREEGY-----VLLDEVEEE 464
           L+ LLG +R  GY       L +VEEE
Sbjct: 562 LDELLGKIRGMGYNPEVEATLHDVEEE 588


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 258/459 (56%), Gaps = 42/459 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW+SM+  Y+  G YEE   LF  MLN  +  P+  ++V+ + AC        
Sbjct: 161 MPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIA-PNRGSIVNAM-ACIHREH--- 215

Query: 61  GMEVHNF---VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
             E  +F   VI++ +  D  + NA +GMYA+CG +D AR     + DKD V+++++I  
Sbjct: 216 --EADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEA 273

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y                               VQ +     L+L ++M+  G+ P++VT+
Sbjct: 274 Y-------------------------------VQADLPINALELFKQMKLLGIVPDSVTL 302

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+    S+ ++ +  + +HG   ++ +  +I + TA+ID Y K G L  A++ FDR   
Sbjct: 303 LSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSA 362

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+LI W+ +IS Y  HG   +A+ LF++M    I+PD + F  VLSAC+H GL+ + W+ 
Sbjct: 363 RNLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWEC 421

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F AM+  +G+ P  EHYACMV +L RA R+SEA  F+ +MP+ P A VWGALL    I  
Sbjct: 422 FKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHS 481

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++E  +    HLF ++ EN G YI+++N+Y+ +G+  EAD +R  MK  G+ K  G + I
Sbjct: 482 NLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTII 541

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E    + +FVA DTS  +++ IY  L +L+  ++E GYV
Sbjct: 542 EIKNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYV 580



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 37/281 (13%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN +I  +S          L+  ML   + +    T   +L+ACG  +D   G   
Sbjct: 64  NVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGI-QATNFTFPFLLKACGCLADFELGARA 122

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V+    + D+++ N+L+ MY + G  D++R + + M +++ VS+S+++  Y  +G  
Sbjct: 123 HAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRY 182

Query: 125 EKAMDLFQVMKRPGLS-TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           E+ + LF  M   G++    ++++ +   +R     D  R                    
Sbjct: 183 EEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCR-------------------- 222

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                            + N  D +  V  A +  YA+ G +  A+R F     + L+ W
Sbjct: 223 ---------------VVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAW 267

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           T++I AY        A+ LF +M   GI PD VT  +++ A
Sbjct: 268 TSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHA 308



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 108/270 (40%), Gaps = 37/270 (13%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +++SH+   L  C +LI  YA  GS+ +A AL                        
Sbjct: 23  LHASILKSHLHPHL--CTSLIAQYASLGSISHAYAL------------------------ 56

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                  F       +  WN +I            L L   M   G++    T   +   
Sbjct: 57  -------FSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKA 109

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
               ++ + G   H + V   Y+ +++VA +++  Y + G    +++VF+R   R+++ W
Sbjct: 110 CGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSW 169

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++++ AYA +G   + + LF  MLN GI P+  +    + AC H    +   D F  +  
Sbjct: 170 SSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIHR---EHEADDFCRVVI 225

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEF 333
             G+          +G+ +R  RI  A  F
Sbjct: 226 DNGLDSDQSVQNAAMGMYARCGRIDVARRF 255



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           ++  +L      L+  K +H   +K+    + ++ T++I  YA  G +  A  +F     
Sbjct: 5   ANCIALIKQCVTLEALKSLHASILKSHL--HPHLCTSLIAQYASLGSISHAYALFSTSHS 62

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            ++ +W  II A++    +  ++ L++ ML  GIQ    TF  +L AC
Sbjct: 63  SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKAC 110


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 253/466 (54%), Gaps = 37/466 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW +MIAGY+Q  F ++    FR+ML+  + R D V + + + AC     +  G +
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQ 595

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H     S    DL   NAL+ +Y+KCG+++ A    ++    D ++             
Sbjct: 596 IHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA------------- 642

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++SG  Q+  +E  L +   M   G+  N  T  S    
Sbjct: 643 ------------------WNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKA 684

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  +N+K GK++H    K  YD    V  AII  YAK G +  A++ F     ++ + W
Sbjct: 685 ASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSW 744

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I+AY+ HG  S+A+  F++M+++ ++P+ VT   VLSAC+H GLVDK  + F +M+ 
Sbjct: 745 NAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNT 804

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YG+ P  EHY C+V +L+RA  +S A +F+ +MP++P A VW  LL    +  ++E+G+
Sbjct: 805 EYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGE 864

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           F   HL E+EPE++  Y++++NLY+   +WD  D  R++MKE G+ K PG+SWIE    +
Sbjct: 865 FAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 924

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            SF   D +   +++I+   + L     E GYV     LL E+++E
Sbjct: 925 HSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQE 970



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 38/362 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD V++N++I G SQ G+ E+   LF+ M     L PD  T+ S++ AC     +  
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRM-QLDGLEPDSNTLASLVVACSSDGTLFS 390

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +  +     +  I  AL+ +YAKC                              
Sbjct: 391 GQQLHAYTTKLGFASNDKIEGALLNLYAKCSD---------------------------- 422

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVIS--GLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              +E A++ F   +   +  WN ++   GL+ + R+     + R+MQ   + PN  T  
Sbjct: 423 ---IETALNYFLETEVENVVLWNVMLVAYGLLDDLRNS--FRIFRQMQIEEIVPNQYTYP 477

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI        +L+ G++IH   +K  +  N YV + +ID YAK G L  A  +  RF G+
Sbjct: 478 SILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 537

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ WT +I+ Y  +    KA++ F +ML+ GI+ D V  T  +SACA    + +   I 
Sbjct: 538 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI- 596

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A +   G    +     +V + S+   I EA     +     +   W AL+ G   SG+
Sbjct: 597 HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNI-AWNALVSGFQQSGN 655

Query: 359 VE 360
            E
Sbjct: 656 NE 657



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 160/353 (45%), Gaps = 34/353 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V WN M+  Y           +FR+M    ++ P+  T  S+L+ C +  D+  G ++
Sbjct: 437 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIRLGDLELGEQI 495

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ +I++  +++ ++C+ LI MYAK G LD A  +L   + KD VS              
Sbjct: 496 HSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS-------------- 541

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            W  +I+G  Q N  +  L   R+M   G+R + V +++  S  
Sbjct: 542 -----------------WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC 584

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    LK G++IH  A  + +  ++    A++  Y+K G +  A   F++ +    I W 
Sbjct: 585 AGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWN 644

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++S +   G+  +A+ +F  M   GI  +  TF + + A + +  + +   + +A+  +
Sbjct: 645 ALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQV-HAVITK 703

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G     E    ++ + ++   IS+A +   ++ +K     W A++   S  G
Sbjct: 704 TGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS-WNAMINAYSKHG 755



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 165/406 (40%), Gaps = 71/406 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R I +WN MI   +      +   LF  M+N  V  P+  T   VL+AC +   + F
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENV-TPNEGTFSGVLEAC-RGGSVAF 186

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +  ++H  +I   +     +CN LI +Y++ G +D AR + D +  KD           
Sbjct: 187 DVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDH---------- 236

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                S+W A+ISGL +N      + L  +M   G+ P     S
Sbjct: 237 ---------------------SSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFS 275

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S      +L+ G+++HG  +K  +  + YV  A++  Y   G L  A+ +F     R
Sbjct: 276 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQR 335

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + +  +I+  +  G   KA+ LF  M  +G++PD  T  +++ AC+  G +       
Sbjct: 336 DAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTL------- 388

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              SGQ                        +   + +K+    + K+ GALL   +   D
Sbjct: 389 --FSGQ------------------------QLHAYTTKLGFASNDKIEGALLNLYAKCSD 422

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           +E      ++  E E EN   + +M   Y        + R+  QM+
Sbjct: 423 IETA---LNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 465



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 32/286 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D  SW +MI+G S+     E   LF +M    ++ P      SVL AC +   +  G +
Sbjct: 234 KDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLEIGEQ 292

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  V++     D ++CNAL+ +Y   GSL  A  +   MS +D V              
Sbjct: 293 LHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAV-------------- 338

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            T+N +I+GL Q    E  ++L + MQ  G+ P++ T++S+   
Sbjct: 339 -----------------TYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVA 381

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L  G+++H Y  K  +  N  +  A+++ YAK   +  A   F   +  ++++W
Sbjct: 382 CSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLW 441

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             ++ AY    D   +  +F +M    I P+  T+ ++L  C   G
Sbjct: 442 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 17/214 (7%)

Query: 83  LIGMYAKCGSLDYARALLDEM----SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           L G     GSLD  R L  ++     D +      ++  Y+  G ++ A+ +F  M    
Sbjct: 74  LEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERT 133

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG----- 193
           + TWN +I  L   +    V  L   M    V PN  T S +          +GG     
Sbjct: 134 IFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEA------CRGGSVAFD 187

Query: 194 --KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
             ++IH   +     ++  V   +ID Y++ GF+  A+RVFD    +    W A+IS  +
Sbjct: 188 VVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLS 247

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            +    +A+ LF +M   GI P P  F++VLSAC
Sbjct: 248 KNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSAC 281



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 23/218 (10%)

Query: 162 VREMQASGVRPNAVTISSIFS-LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           +  ++  G+RPN  T+  +         +L  G+++H   +K  +D N  ++  ++D Y 
Sbjct: 55  IDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYL 114

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
             G L GA +VFD    R++  W  +I   A+   + K   LF  M+N  + P+  TF+ 
Sbjct: 115 FKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSG 174

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQ----------PSVEHYACMVGVLSRARRISEA 330
           VL AC    +   A+D+   +  +   Q          P ++ Y+   G + RARR+ + 
Sbjct: 175 VLEACRGGSV---AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYS-RNGFVDRARRVFDG 230

Query: 331 TEFVSKMPVKPSAKVWGALLYGASIS-GDVELGKFVCD 367
                 + +K  +  W A++ G S +  +VE  +  CD
Sbjct: 231 ------LYLKDHSS-WVAMISGLSKNECEVEAIRLFCD 261



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S ++ VSWN+MI  YS+ GF  E    F +M++S V RP+ VT+V VL AC     +  
Sbjct: 736 LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNV-RPNHVTLVGVLSACSHIGLVDK 794

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+E    +   +    K + ++C  ++ M  + G L  A+  + EM  + D + +  ++S
Sbjct: 795 GIEYFESMNTEYGLAPKPEHYVC--VVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLS 852

Query: 117 GYMVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
             +VH  +E     A  L ++   P  S    ++S L    R     DL R+ M+  GV+
Sbjct: 853 ACVVHKNMEIGEFAAHHLLEL--EPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVK 910

Query: 172 --PNAVTI---SSIFSLFSHFSNLKGGKEIHGY 199
             P    I   +SI S +    N     EIH Y
Sbjct: 911 KEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 943


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 153/447 (34%), Positives = 248/447 (55%), Gaps = 36/447 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW  +I+GY + G ++E   LF  M     + P+  T VSVL ACG+   +  
Sbjct: 95  MLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM----DVEPNAATFVSVLVACGRKGYLSV 150

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H    +S   + L + NAL+ MY KCG L  A+ + DE+++KD VS          
Sbjct: 151 GKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVS---------- 200

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++ISGLVQ N  +  L+L ++MQ+SG+ P+ + ++S+
Sbjct: 201 ---------------------WTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSV 239

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+ +H +  +     +I + TA++D YAK G +  + ++F+    +++
Sbjct: 240 LSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNV 299

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+++  A HG A K + LF EM+  G++P+ VTF A+L+AC H GLV++    FN 
Sbjct: 300 LTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNW 359

Query: 301 MSG-QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           M G QY + P +EHY CMV +L RAR + EA E    MP+ P  ++ GALL     +G+ 
Sbjct: 360 MKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNT 419

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL + + D   E++  ++G Y++++N+++   RWD+  R+R  MKE G+ K PG + IE 
Sbjct: 420 ELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIEL 479

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERL 446
            G    F+  DT   + ++I L+L+ L
Sbjct: 480 DGKAHEFIVGDTRHPQDKRIRLLLKIL 506



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 169/349 (48%), Gaps = 37/349 (10%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N++++GY+ G   +    ++R ++    L PD  T  +VL++C +   I  G +VH  +
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFL-PDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+     ++++ N+L+  Y+ C     A  + DEM  +D VS++ +ISGY+  G  ++A+
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M                                   V PNA T  S+        
Sbjct: 121 GLFLRMD----------------------------------VEPNAATFVSVLVACGRKG 146

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  GK IHG + K+ +   + V+ A++D Y K G L GA++VFD    + ++ WT+IIS
Sbjct: 147 YLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIIS 206

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
                    +A+ LF +M ++GI+PD +  T+VLSACA  G +D    +   +  +  I+
Sbjct: 207 GLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHID-RKAIK 265

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             ++    MV + ++   I  + +  + MP K +   W ALL G ++ G
Sbjct: 266 WDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHK-NVLTWNALLNGLAMHG 313


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 261/475 (54%), Gaps = 26/475 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSD 57
           M  R++V+WN+MIA Y Q    +E  +LF EM     +     TV++     G   ++  
Sbjct: 259 MPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSI--SWTTVINGYVRMGKLDEARQ 316

Query: 58  IVFGMEVHNFVIES--------------------HIKMDLWIC-NALIGMYAKCGSLDYA 96
           ++  M   N   ++                     I +   +C N +I  Y++CG +D A
Sbjct: 317 LLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEA 376

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             L  +M  KD VS++ +++ Y   G ++ A+ +F+ MK   + +WN++ISGL QN  + 
Sbjct: 377 LHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYL 436

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             L     M   G +P+  T +   S  +H + L+ GK++H   +K+ Y  +++V+ A+I
Sbjct: 437 DALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALI 496

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YAK G +  A+ +F       ++ W ++I+AYA +G+  +A+ LF++M   G+ PD V
Sbjct: 497 TMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEV 556

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           TF  +LSAC+H GL+D+   +F  M   Y I+P  EHYACMV +L RA R+ EA + V  
Sbjct: 557 TFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRG 616

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           M +  +A +WGALL    I G++EL KF  + L E EP  T NY++++N+ ++AGRWDE 
Sbjct: 617 MKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEV 676

Query: 397 DRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            RVR  MKE G  K PG SWIE    + +F+++D +  ++ ++  IL  L   MR
Sbjct: 677 ARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSLTAHMR 731



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 199/449 (44%), Gaps = 77/449 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+IVSWNSMIA Y      EE + LF +M        D  +   ++    ++ ++  
Sbjct: 72  MPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTR-----DLYSWTLMITCYTRNGELAK 126

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              + N +     K +   CNA++  YAK    D AR L D M  KD VS++++++GY  
Sbjct: 127 ARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTR 183

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +   +  F+ M    + +WN ++ G V+      V DL    +     PN  T+S +
Sbjct: 184 NGEMRLGLQFFEEMAERDVVSWNLMVDGFVE------VGDLNSSWEFFEKIPNPNTVSWV 237

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                                             ++  +A+ G +  A+R+FD+   R++
Sbjct: 238 ---------------------------------TMLCGFARFGKIAEARRLFDQMPIRNV 264

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+AY  +    +A+SLF EM     + + +++T V++     G +D+A  + N 
Sbjct: 265 VAWNAMIAAYVQNCHVDEAISLFMEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQ 320

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +     +V     M+    + +R+ +A +  +++ ++     W  ++ G S  G ++
Sbjct: 321 MPYR-----NVAAQTAMISGYVQNKRMDDARQIFNQISIR-DVVCWNTMIAGYSQCGRMD 374

Query: 361 LGKFVCDHLF-EIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
                  HLF ++  ++  ++  M   Y+Q G+ D A ++ E+MKE  +      SW   
Sbjct: 375 EAL----HLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIV-----SWNSL 425

Query: 420 SGG----------LQSFVAKDTSGDKSEQ 438
             G          L+SF+     G K +Q
Sbjct: 426 ISGLTQNGSYLDALKSFMLMGHEGQKPDQ 454



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 149/331 (45%), Gaps = 24/331 (7%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N  I    K G +D A  +   M+ K+ V+++++IS +  +G +  A  LF  M +  + 
Sbjct: 19  NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIV 78

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN++I+  + N+R E    L  +M    +    + I+     ++    L   + +    
Sbjct: 79  SWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITC----YTRNGELAKARNLFNLL 134

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
               Y  N     A++  YAK      A+R+FD    + L+ W ++++ Y  +G+    +
Sbjct: 135 P---YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGL 191

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
             F EM     + D V++  ++      G ++ +W+ F  +       P+   +  M+  
Sbjct: 192 QFFEEM----AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPN-----PNTVSWVTMLCG 242

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGDVELGKFVCDHLFEIEPENTG 378
            +R  +I+EA     +MP++ +   W A++  Y  +   D  +  F+     E+  +N+ 
Sbjct: 243 FARFGKIAEARRLFDQMPIR-NVVAWNAMIAAYVQNCHVDEAISLFM-----EMPEKNSI 296

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           ++  + N Y + G+ DEA ++  QM    +A
Sbjct: 297 SWTTVINGYVRMGKLDEARQLLNQMPYRNVA 327


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 254/427 (59%), Gaps = 4/427 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN MI+GY +   +EE   ++R M      +P+  TVVS L AC    ++  
Sbjct: 169 MPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLEL 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H++ I S + +   + NAL+ MY KCG +  AR + D M+ K+   ++++++GY++
Sbjct: 229 GKEIHDY-IASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVI 287

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +++A +LF+      +  W A+I+G VQ NR E  + L  EMQ  GV+P+   + ++
Sbjct: 288 CGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTL 347

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IH Y  +NR   +  V TA+I+ YAK G +  +  +F+  K +  
Sbjct: 348 LTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDT 407

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT+II   A +G  S+A+ LF  M   G++PD +TF AVLSAC+H+GLV++   +F++
Sbjct: 408 TSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHS 467

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
           MS  Y I+P++EHY C + +L RA  + EA E V K+P + +     ++GALL      G
Sbjct: 468 MSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYG 527

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++++G+ +   L +++  ++  + ++A++Y+ A RW++  +VR +MK+ G+ K+PG S I
Sbjct: 528 NIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAI 587

Query: 418 ECSGGLQ 424
           E  G  Q
Sbjct: 588 EVDGKWQ 594



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 197/468 (42%), Gaps = 112/468 (23%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N MI  + + G +    +LF+++    V  PD  T   VL+  G   ++  G +VH FV
Sbjct: 76  YNLMIKAFVKSGSFRSAISLFQQLREHGVW-PDNYTYPYVLKGIGCIGEVREGEKVHAFV 134

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++ ++ D ++CN+ + MYA+ G ++    + +EM D+D VS++ +ISGY          
Sbjct: 135 VKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGY---------- 184

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSLFSHF 187
                                V+  R E  +D+ R M   S  +PN  T+ S  S  +  
Sbjct: 185 ---------------------VRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVL 223

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD-------------- 233
            NL+ GKEIH Y + +  D    +  A++D Y K G +  A+ +FD              
Sbjct: 224 RNLELGKEIHDY-IASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMV 282

Query: 234 -----------------RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
                            R   R +++WTA+I+ Y       + ++LF EM   G++PD  
Sbjct: 283 TGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKF 342

Query: 277 TFTAVLSACAHS-----------------------------------GLVDKAWDIFNAM 301
               +L+ CA S                                   G ++K+++IFN +
Sbjct: 343 IVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGL 402

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
                 +     +  ++  L+   + SEA E    M    +KP    + A+L   S +G 
Sbjct: 403 K-----EKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGL 457

Query: 359 VELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           VE G+ +      ++ IEP N  +Y    +L  +AG   EA+ + +++
Sbjct: 458 VEEGRKLFHSMSSMYHIEP-NLEHYGCFIDLLGRAGLLQEAEELVKKL 504



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 131/284 (46%), Gaps = 9/284 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F  +  P L  +N +I   V++    + + L ++++  GV P+  T   +      
Sbjct: 61  ANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGC 120

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              ++ G+++H + VK   + + YV  + +D YA+ G + G  +VF+    R  + W  +
Sbjct: 121 IGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIM 180

Query: 247 ISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           IS Y       +AV ++  M   +  +P+  T  + LSACA    ++   +I + ++ + 
Sbjct: 181 ISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASEL 240

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            +   + +   ++ +  +   +S A E    M VK +   W +++ G  I G ++  +  
Sbjct: 241 DLTTIMGN--ALLDMYCKCGHVSVAREIFDAMTVK-NVNCWTSMVTGYVICGQLDQAR-- 295

Query: 366 CDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             +LFE  P  +   +  M N Y Q  R++E   +  +M+  G+
Sbjct: 296 --NLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGV 337



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 46/229 (20%)

Query: 182 SLFSHFSNLKGGKEI--HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           SL     ++   K+I  H + V  + DR+           +  G  + A R+F+     S
Sbjct: 13  SLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPS 72

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS--AC------------ 285
           L I+  +I A+   G    A+SLF ++  +G+ PD  T+  VL    C            
Sbjct: 73  LFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHA 132

Query: 286 ---------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
                                A  GLV+    +F  M  +  +  ++     M+    R 
Sbjct: 133 FVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNI-----MISGYVRC 187

Query: 325 RRISEATEFVSKMPV----KPSAKVWGALLYGASISGDVELGKFVCDHL 369
           +R  EA +   +M      KP+     + L   ++  ++ELGK + D++
Sbjct: 188 KRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYI 236


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 247/451 (54%), Gaps = 32/451 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S++  V +NS+++GY+     ++   LF EM    V   +GVT++ ++Q CG   ++  G
Sbjct: 74  SRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGV-EINGVTMLGLVQPCGIPGNLGLG 132

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           M VH F ++  + MD  + N L+ MY K G +D  R L DE                   
Sbjct: 133 MCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDE------------------- 173

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                       M R GL TWNA+I+G  QN     VL+L +EM++ G  P+ +T+  + 
Sbjct: 174 ------------MPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVL 221

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +H   L  GKE+        +  N ++  A+++ YA+ G L  A+ +FD    +S++
Sbjct: 222 SSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVV 281

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTAII  Y  HG    AV LF+EM+  GI+PD   F +VLSAC+H+GL +K  D F  M
Sbjct: 282 SWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVM 341

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YG++P  EHY+CMV +L RA R++EA E +  M V+    +WGALL    I  +VEL
Sbjct: 342 ERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVEL 401

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +   + + E+EP NTG Y++++N+Y++AG  +   RVR  M++  L K PG S++E  G
Sbjct: 402 AELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKG 461

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
            +  F A D +  ++ +IY  L  L  L+++
Sbjct: 462 RVHLFFAGDRNHPQTNEIYKKLNELENLVKD 492



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 178/406 (43%), Gaps = 76/406 (18%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+  T    +++C   S  + G ++H  V ++   ++ ++  +LI MY KC  +D AR L
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67

Query: 100 LDE--MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            DE   S K  V Y++++SGY +                               N+R + 
Sbjct: 68  FDENPQSRKLTVCYNSLLSGYAL-------------------------------NSRVKD 96

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           V+ L  EM+  GV  N VT+  +        NL  G  +HG+ VK   D +  V   ++ 
Sbjct: 97  VVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLT 156

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y K+G +   +++FD    + LI W A+I+ YA +G A+  + L+ EM + G  PDP+T
Sbjct: 157 MYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLT 216

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
              VLS+CAH G +    ++   M G +G   +      +V + +R   + +A +    M
Sbjct: 217 LVGVLSSCAHLGALSVGKEVERKMEG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGM 275

Query: 338 PVKPSAKVWGALL--YGASISGDVELGKFVCDHLFE--IEPENTG--------------- 378
           PVK S   W A++  YG    G+V +G F  D +    I+P+ T                
Sbjct: 276 PVK-SVVSWTAIIGGYGMHGQGEVAVGLF--DEMIRGGIKPDGTAFVSVLSACSHAGLTN 332

Query: 379 --------------------NYIIMANLYSQAGRWDEADRVREQMK 404
                               +Y  M +L  +AGR +EA  + E M+
Sbjct: 333 KGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQ 378



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++ +++WN+MI GY+Q G       L++EM  S    PD +T+V VL +C     +  
Sbjct: 174 MPRKGLITWNAMINGYAQNGLANNVLELYKEM-ESKGFCPDPLTLVGVLSSCAHLGALSV 232

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV   +       + ++ NAL+ MYA+CG+L  AR + D M  K  VS++AII GY +
Sbjct: 233 GKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGM 292

Query: 121 HGFVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAV 175
           HG  E A+ LF  M R G+    + + +V+S           LD    M+   G+RP A 
Sbjct: 293 HGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAE 352

Query: 176 TISSIFSLFSHFSNLKGGKEI 196
             S +  L      L   +E+
Sbjct: 353 HYSCMVDLLGRAGRLNEAREL 373



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 4/195 (2%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M  SG  PNA T        +  S    GK++H +  K       +V T++I  Y K   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 225 LHGAQRVFDRF-KGRSL-IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           +  A+++FD   + R L + + +++S YA +      V LF EM   G++ + VT   ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
             C   G +     + +    ++G+        C++ +  ++  I    +   +MP K  
Sbjct: 121 QPCGIPGNLGLGMCV-HGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRK-G 178

Query: 343 AKVWGALLYGASISG 357
              W A++ G + +G
Sbjct: 179 LITWNAMINGYAQNG 193


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 261/456 (57%), Gaps = 10/456 (2%)

Query: 5   DIVSWNSMIAGY---SQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           D+ ++N MI  Y     G     CKAL  +++M    ++ P+ +T   +L+ C Q  D  
Sbjct: 85  DLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIV-PNCLTFPFLLKGCTQWLDGA 143

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H  VI+     D+++ N+LI +Y   G L  AR + DEM   D V++++++ G +
Sbjct: 144 TGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCL 203

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG---VRPNAVT 176
            +G ++ AMDLF+ M    + TWN++I+GL Q    +  L+L  EMQ      V+P+ +T
Sbjct: 204 RNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKIT 263

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I+S+ S  +    +  GK +HGY  +N  + ++ + TA+++ Y K G +  A  +F+   
Sbjct: 264 IASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMP 323

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +    WT +IS +A HG   KA + F EM   G++P+ VTF  +LSACAHSGLV++   
Sbjct: 324 EKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRW 383

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F+ M   Y I+P V HYACMV +LSRAR   E+   +  MP+KP   VWGALL G  + 
Sbjct: 384 CFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMH 443

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL-AKIPGRS 415
           G+VELG+ V  HL ++EP N   Y+   ++Y++AG +D A R+R  MKE  +  KIPG S
Sbjct: 444 GNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCS 503

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            IE +G +Q F A  +S    +++ L+L  L   M+
Sbjct: 504 MIEINGEVQEFSAGGSSELPMKELVLVLNGLSNEMK 539



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 44/309 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDI 58
           M+ R+I++WNS+I G +QGG  +E   LF EM  L+  +++PD +T+ SVL AC Q   I
Sbjct: 218 MNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAI 277

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G  VH ++  + I+ D+ I  AL+ MY KCG +  A  + +EM +KD  +++ +IS +
Sbjct: 278 DHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVF 337

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            +HG   KA + F                                EM+ +GV+PN VT  
Sbjct: 338 ALHGLGWKAFNCF-------------------------------LEMEKAGVKPNHVTFV 366

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            + S  +H   ++ G+      +K  Y  +  +Y    ++D  ++      ++ +     
Sbjct: 367 GLLSACAHSGLVEQGRWCFD-VMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMP 425

Query: 237 GR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC---AHSGLVD 292
            +  + +W A++     HG+    V L  +++++ I  +P      ++ C   A +G+ D
Sbjct: 426 MKPDVYVWGALLGGCQMHGN----VELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFD 481

Query: 293 KAWDIFNAM 301
            A  I N M
Sbjct: 482 AAKRIRNIM 490


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 167/509 (32%), Positives = 271/509 (53%), Gaps = 62/509 (12%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +I+ Y + GF ++  + +++M+   + RPD  T  SVL+ACG+  D+ FG EVH  +
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVKKGI-RPDNFTYPSVLKACGEELDLGFGKEVHESI 227

Query: 69  IES---------------------HIKMDLWICNALIGMYAKCGSLDYARALLDEM---- 103
             S                      I++++ I N + G Y + G+   A  LL +M    
Sbjct: 228 NASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCG 287

Query: 104 SDKDEVSY-----------------------------------SAIISGYMVHGFVEKAM 128
           S  D V+                                    +A+I+ Y     ++ A 
Sbjct: 288 SHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAY 347

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LFQ+M+   L TWN++ISG    +R E    L+REM   G+ PN VTI+S+  L +  +
Sbjct: 348 LLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVA 407

Query: 189 NLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           NL+ GKE H Y  +   +  ++ +  A++D YA++G +  A+RVFD    R  + +T++I
Sbjct: 408 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMI 467

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           + Y   G+   A+ LF EM N  I+PD +T  AVLSAC+HSGLV +   +F  M   YG+
Sbjct: 468 AGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGL 527

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
            P +EH+ACM  +  RA  +++A E +  MP KP+  +W  L+    I  + E+G++  +
Sbjct: 528 TPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAE 587

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFV 427
            L E++PEN G Y+++AN+Y+ AG W++  +VR  M++ G+ K PG +W++   G   F+
Sbjct: 588 KLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFL 647

Query: 428 AKDTSGDKSEQIYLILERLLGLMREEGYV 456
             DTS   +++IY +LE L  +M+E GY+
Sbjct: 648 VDDTSNANADEIYPLLEGLTMVMKEAGYI 676



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +++WNS+I+G       EE   L REML   +  P+ VT+ SVL  C + +++  
Sbjct: 353 MEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGI-EPNYVTIASVLPLCARVANLQH 411

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E H ++      K  L + NAL+ MYA+ G +  AR + D + ++D+++Y+++I+GY 
Sbjct: 412 GKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 471

Query: 120 VHGFVEKAMDLFQVMK----RPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQASGV 170
           + G  + A+ LF+ M     +P   T  AV+     SGLV     + + + +R +   G+
Sbjct: 472 MQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG--QLLFEKMRSLY--GL 527

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEI 196
            P+    + +  LF     L   KEI
Sbjct: 528 TPHLEHFACMTDLFGRAGLLNKAKEI 553



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/423 (20%), Positives = 169/423 (39%), Gaps = 66/423 (15%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           + S+L +C     +  G ++H  +I    +    +   L+  Y+    L  A  + +  +
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ-----------NN 153
                 ++ +IS Y+ +GF +KA+  ++ M + G+   N     +++             
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 154 RHEAV--------------LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG------- 192
            HE++               +L   M A  +  N +  ++I   +    N KG       
Sbjct: 223 VHESINASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQ 282

Query: 193 ----------------------------GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
                                       GKEIH +A+++ +     V  A+I  Y++   
Sbjct: 283 MRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKD 342

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS-LFNEMLNNGIQPDPVTFTAVLS 283
           L  A  +F   + +SLI W +IIS    H D S+  S L  EML  GI+P+ VT  +VL 
Sbjct: 343 LKHAYLLFQLMEAKSLITWNSIISG-CCHMDRSEEASFLLREMLLFGIEPNYVTIASVLP 401

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            CA    +    +    M+ +   +  +  +  +V + +R+ ++ EA   V  M  +   
Sbjct: 402 LCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARR-VFDMLGERDK 460

Query: 344 KVWGALL--YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
             + +++  YG    G   L  F   + F+I+P++    I + +  S +G   +   + E
Sbjct: 461 MTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI-TMIAVLSACSHSGLVTQGQLLFE 519

Query: 402 QMK 404
           +M+
Sbjct: 520 KMR 522



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 46/314 (14%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ISS+ S  +   +L  G+++HG+ +   ++++  +   ++  Y+    L  A  + +   
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC----------- 285
                 W  +IS+Y  +G   KA+S + +M+  GI+PD  T+ +VL AC           
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 286 ----------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
                     A  G+ ++A+++F +M  +  I+ ++  +  + G   R      A E +S
Sbjct: 223 VHESINASLYASMGMWNEAFELFGSMWAE-DIELNIIIWNTIAGGYLRTGNYKGALELLS 281

Query: 336 KMPVKPSAKVWGALLYG---ASISGDVELGKFVCDHLFEI-----EPENTGNYIIMANLY 387
           +M    S     AL+ G    S  GD +LGK +  H F I     E +   N +I   +Y
Sbjct: 282 QMRKCGSHLDSVALIIGLGACSHIGDAKLGKEI--HSFAIRSCFGEVDTVKNALI--TMY 337

Query: 388 SQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLL 447
           S+      A  + + M+   L      +W        S ++     D+SE+   +L  +L
Sbjct: 338 SRCKDLKHAYLLFQLMEAKSLI-----TW-------NSIISGCCHMDRSEEASFLLREML 385

Query: 448 GLMREEGYVLLDEV 461
               E  YV +  V
Sbjct: 386 LFGIEPNYVTIASV 399


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 249/451 (55%), Gaps = 5/451 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH-NF 67
           +N++I GY      +E    +  M    V+ P   T  ++ +ACG   D+  G ++H   
Sbjct: 114 YNALIRGYLIEERLKESTEFYSLMRKEGVV-PVSFTFTALFKACGAKMDVGLGRQIHGQT 172

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           ++      DL + N++I MY KCG L+  R + DEM ++D +S++ +IS Y+  G +E A
Sbjct: 173 ILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESA 232

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            +LF  +    +  W  ++SG  QN +    +    +MQ  GV  + +T+  + S  +  
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQL 292

Query: 188 SNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
              K    I   A K+ +    ++ V +A+ID Y+K G +  A RVF   K R++  +++
Sbjct: 293 GAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSS 352

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I  +A HG    A+ LF+EM+   I+P+ VTF  VL+AC+H+G+V++ W IF  M   Y
Sbjct: 353 MILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCY 412

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           GI+PS +HY CMV +L RA R+ EA E V  MP++P   VWGALL    I    ++    
Sbjct: 413 GIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIA 472

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL-Q 424
            +HLFE+EP   GNYI++AN+Y+  GRW++   VR+ M+  GL K P  SWIE   G+  
Sbjct: 473 ANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVH 532

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            F + D +  +S +I   LE LL  +  +GY
Sbjct: 533 EFFSGDMTHPRSGEIKQALEDLLDRLEAKGY 563



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/436 (20%), Positives = 173/436 (39%), Gaps = 117/436 (26%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLD-YARALLDE 102
           +V+ L  C   + I    +VH  ++ + +    ++   LI    K    +D Y  ++ ++
Sbjct: 49  IVTTLDGCKNLTQI---KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           ++  +   Y+A+I GY++   ++++ + + +M++                          
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRK-------------------------- 139

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV-KNRYDRNIYVATAIIDTYAK 221
                 GV P + T +++F       ++  G++IHG  +    +  +++V  ++ID Y K
Sbjct: 140 -----EGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIK 194

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD-------------------------- 255
            GFL   ++VFD    R +I WT +ISAY   G+                          
Sbjct: 195 CGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGF 254

Query: 256 -----ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----------------------- 287
                  +A+  F +M   G++ D +T   V+SACA                        
Sbjct: 255 AQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKH 314

Query: 288 -----SGLVD---------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
                S L+D          A+ +F  M      + +V  Y+ M+   +   R+ +A + 
Sbjct: 315 SVVVGSALIDMYSKCGSVGDAYRVFQGMK-----ERNVYSYSSMILGFAMHGRVHDAMKL 369

Query: 334 VSKM---PVKPSAKVWGALLYGASISGDVELGKFV---CDHLFEIEPENTGNYIIMANLY 387
             +M    +KP+   +  +L   S +G VE G  +    +  + I+P +  +Y  M +L 
Sbjct: 370 FDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKP-SADHYTCMVDLL 428

Query: 388 SQAGRWDEADRVREQM 403
            +AGR  EA  + + M
Sbjct: 429 GRAGRLQEAHELVKTM 444



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 37/233 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALF-----REMLNSPVL--------RP------- 40
           M  RD++SW  +I+ Y + G  E    LF     ++M+   V+        +P       
Sbjct: 208 MPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFF 267

Query: 41  ----------DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYA 88
                     D +T++ V+ AC Q     +   + +   +S    K  + + +ALI MY+
Sbjct: 268 EKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYS 327

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCGS+  A  +   M +++  SYS++I G+ +HG V  AM LF  M +  +        G
Sbjct: 328 KCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIG 387

Query: 149 LVQNNRHEAVLDLVREM-----QASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           ++    H  +++   ++     +  G++P+A   + +  L      L+   E+
Sbjct: 388 VLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHEL 440



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ S++SMI G++  G   +   LF EM+ + + +P+ VT + VL AC  +  +  
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEI-KPNRVTFIGVLTACSHAGMVEQ 400

Query: 61  GMEVHNFVIESH-IK--MDLWICNALIGMYAKCGSLDYARALLDEM 103
           G ++   + + + IK   D + C  ++ +  + G L  A  L+  M
Sbjct: 401 GWQIFELMEKCYGIKPSADHYTC--MVDLLGRAGRLQEAHELVKTM 444



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 8/234 (3%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ--RVFDRF 235
           S I +      NL   K++H   + N  D++ YV   +I T  K           +F++ 
Sbjct: 47  SQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQV 106

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
              +  ++ A+I  Y       ++   ++ M   G+ P   TFTA+  AC     V    
Sbjct: 107 NYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGR 166

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            I        G    +     M+ +  +   +    +   +MP +     W  L+     
Sbjct: 167 QIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR-DVISWTELISAYVK 225

Query: 356 SGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           SG++E        LF+  P ++   + +M + ++Q  +  EA    E+M+E G+
Sbjct: 226 SGNMESA----GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGV 275


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 257/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + + SWN++I G+ Q GF  +   L+  M  S  L PD  T+ S+L AC +   +  
Sbjct: 462 MESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSG-LEPDLFTIASLLSACARLKSLSC 520

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  ++ +  ++D +IC +L+ +Y +CG +  A+   D M +K+             
Sbjct: 521 GKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKN------------- 567

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L  WN +I+G  QN      LD+  +M +S + P+ ++I   
Sbjct: 568 ------------------LVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGA 609

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S L+ GKE+H +AVK+    + +V  ++ID YAK G +  +Q +FDR   +  
Sbjct: 610 LGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE 669

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   KA+ LF  M N G +PD VTF A+L+AC H+GLV +  +    
Sbjct: 670 VTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQ 729

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+P +EHYAC+V +L RA R++EA E V+++P KP +++W +LL       D++
Sbjct: 730 MQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLD 789

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V + L E+ P+   NY++++N Y++ G+WDE  ++R++MKE GL K  G SWIE  
Sbjct: 790 IGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIG 849

Query: 421 GGLQSFVAKDTS---GDKSEQIYLILERLLGLM--REEGYVLLDEVEEE 464
           G +  F+  D S     K +Q ++ LE+ +  +  + +   +L E+EE+
Sbjct: 850 GKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEED 898



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/500 (23%), Positives = 226/500 (45%), Gaps = 90/500 (18%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++++++SWNSMI GYS+   +     L R+M     ++ + VT+++VL  C +    +  
Sbjct: 360 NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL 419

Query: 62  MEVHNFVI-ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            E+H + +    I+ D  + NA +  YAKCGSL YA  +   M  K   S++A+I G++ 
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF  KA+DL+ +M+                                SG+ P+  TI+S+
Sbjct: 480 NGFPRKALDLYLLMR-------------------------------GSGLEPDLFTIASL 508

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L  GKEIHG  ++N ++ + ++  +++  Y + G +  A+  FD  + ++L
Sbjct: 509 LSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNL 568

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           + W  +I+ ++ +     A+ +F++ML++ I PD ++    L AC               
Sbjct: 569 VCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCF 628

Query: 286 --------------------AHSGLVDKAWDIFNA--MSGQYGIQPSVEHYACMVGVLSR 323
                               A  G ++++ +IF+   + G+      +  Y    G+   
Sbjct: 629 AVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGY----GIHGH 684

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE-----LGKFVCDHLFEIEPENTG 378
            R+  E  + +     +P +  + ALL   + +G V      LG+     LF I+P+   
Sbjct: 685 GRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQM--QSLFGIKPK-LE 741

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQ 438
           +Y  + ++  +AGR +EA  +  ++ +    K   R W       +++   D     + +
Sbjct: 742 HYACVVDMLGRAGRLNEALELVNELPD----KPDSRIWSSLLSSCRNYRDLDIGEKVANK 797

Query: 439 IYLILERLLGLMREEGYVLL 458
              +LE  LG  + E YVL+
Sbjct: 798 ---LLE--LGPDKAENYVLI 812



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 175/359 (48%), Gaps = 41/359 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M +R++VSWNS++    + G +EE   LF+ +LN    L PD  T+V+V+  C +  ++ 
Sbjct: 257 MPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVR 316

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            GM  H   ++  +  +L + ++L+ MY+KCG L  AR L D  ++K+ +S++++I GY 
Sbjct: 317 LGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGY- 374

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTIS 178
                                          ++       +L+R+MQ    V+ N VT+ 
Sbjct: 375 ------------------------------SKDRDFRGAFELLRKMQMEDKVKVNEVTLL 404

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           ++  +          KEIHGYA+++ +   +  VA A +  YAK G LH A+ VF   + 
Sbjct: 405 NVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMES 464

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + +  W A+I  +  +G   KA+ L+  M  +G++PD  T  ++LSACA    +    +I
Sbjct: 465 KMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEI 524

Query: 298 FNAMSGQYGIQPSVEHYAC--MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +M  + G +  ++ + C  +V +  +  +I  A  F   M  K +   W  ++ G S
Sbjct: 525 HGSML-RNGFE--LDEFICISLVSLYVQCGKILLAKLFFDNMEEK-NLVCWNTMINGFS 579



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 142/284 (50%), Gaps = 31/284 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++++  WN++++GY +   + +   +F EM++     PD  T+  V++AC    D+  G 
Sbjct: 157 RKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGE 216

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH F +++ +  D+++ NALI MY K G ++ A  + D+M  ++ VS+++++   + +G
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             E++  LF+               GL+  +               G+ P+  T+ ++  
Sbjct: 277 VFEESYGLFK---------------GLLNGDE--------------GLMPDVATMVTVIP 307

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L +    ++ G   HG A+K      + V ++++D Y+K G+L  A+ +FD    +++I 
Sbjct: 308 LCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVIS 366

Query: 243 WTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSAC 285
           W ++I  Y+   D   A  L  +M + + ++ + VT   VL  C
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 138/287 (48%), Gaps = 36/287 (12%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +LQ CG+  +I  G ++HNF+  S H + D+ +   L+ MY+ C S              
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDS-------------- 144

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREM 165
               Y + +              +F   +R  L  WNA++SG ++N+   +AV   V  +
Sbjct: 145 ---PYDSCL--------------VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +   P+  T+  +        +++ G+ +HG+A+K +   +++V  A+I  Y K GF+
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN--NGIQPDPVTFTAVLS 283
             A +VFD+   R+L+ W +++ A   +G   ++  LF  +LN   G+ PD  T   V+ 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
            CA  G V +   +F+ ++ + G+   ++  + ++ + S+   + EA
Sbjct: 308 LCARQGEV-RLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEA 353



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 90/199 (45%), Gaps = 7/199 (3%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY-AVKNRYDRNIYVATAIIDTYAKTG 223
           + +S  +P  + I  +  L   + N++ G++IH + +    +  ++ + T ++  Y+   
Sbjct: 85  VSSSNSKPKQL-IGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICD 143

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVL 282
             + +  VF+  + ++L +W A++S Y  +     AV +F EM++     PD  T   V+
Sbjct: 144 SPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVI 203

Query: 283 SACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
            AC   G+ D +  +  +  + +  +   V     ++ +  +   +  A +   KMP + 
Sbjct: 204 KACV--GVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRN 261

Query: 342 SAKVWGALLYGASISGDVE 360
               W +++Y    +G  E
Sbjct: 262 LVS-WNSVMYACLENGVFE 279


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 263/473 (55%), Gaps = 43/473 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D+VSWN+MI+GY +   ++E   L+++M+ + V +PD  T+V+V+ AC QS  I  
Sbjct: 157 ISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV-KPDESTMVTVVSACAQSGSIEL 215

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+++ +     ++ I N LI +Y+KCG                             
Sbjct: 216 GRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE---------------------------- 247

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A  LFQ + +  + +WN +I G    N ++  L L +EM  SG  PN VT+ S+
Sbjct: 248 ---VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA----TAIIDTYAKTGFLHGAQRVFDRFK 236
               +H   +  G+ IH Y   N+  + +  A    T++ID YAK G +  A++VFD   
Sbjct: 305 LPACAHLGAIDIGRWIHVYI--NKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSML 362

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            RSL  W A+I  +A HG A+ A  LF++M  NGI PD +TF  +LSAC+HSG++D    
Sbjct: 363 TRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRH 422

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IF +MS  Y I P +EHY CM+ +L       EA E +  MP++P   +W +LL    + 
Sbjct: 423 IFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH 482

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VELG+    +L +IEPEN G+Y++++N+Y+ AGRWD+  ++R  + + G+ K PG S 
Sbjct: 483 NNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSS 542

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           IE    +  F+  D    ++ +IY +LE +  LM E G+V     +L E+EEE
Sbjct: 543 IEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEE 595



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 185/354 (52%), Gaps = 3/354 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L P+  +   +L++C +S  ++ G ++
Sbjct: 29  NLLIWNTMFRGHALNSDSVTALKLYVCMISLGLL-PNSYSFPFLLKSCAKSKALIEGQQI 87

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +D+++  +LI MYA+ G L+ A  + D  S +  VSY+A+I+GY   G++
Sbjct: 88  HGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYI 147

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  LF  +    + +WNA+ISG V+    +  L+L ++M  + V+P+  T+ ++ S  
Sbjct: 148 NNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSAC 207

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +++ G+++H +   + +  NI +   +ID Y+K G +  A  +F     + +I W 
Sbjct: 208 AQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWN 267

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  +       +A+ LF EML +G  P+ VT  +VL ACAH G +D    I   ++ +
Sbjct: 268 TLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKR 327

Query: 305 Y-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             G+  +      ++ + ++   I  A +    M  + S   W A+++G ++ G
Sbjct: 328 LKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTR-SLSSWNAMIFGFAMHG 380



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   N+     L L   M + G+ PN+ +   +    + 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L  G++IHG+ +K  YD ++YV T++I  YA+ G L  A +VFDR   R ++ +TA+
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 247 ISAYAAHGDASKAVSLFNE-------------------------------MLNNGIQPDP 275
           I+ YA+ G  + A  LF+E                               M+   ++PD 
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 276 VTFTAVLSACAHSGLVD 292
            T   V+SACA SG ++
Sbjct: 198 STMVTVVSACAQSGSIE 214


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 257/471 (54%), Gaps = 39/471 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS----DI 58
           KR I  WN++    +  G  EE   L+ +M N   +  D  T   VL+AC  S      +
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTADHL 198

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G E+H  +        ++I   L+ MYA+ G +DYA  + + M  ++ VS+SA+I+ Y
Sbjct: 199 TKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY 258

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G   +A+  F+                           +++ E + S   PN+VT+ 
Sbjct: 259 AKNGKAFEALRTFR---------------------------EMMTETKDSS--PNSVTMV 289

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +  + L+ G+ IHGY ++   D  + V +A++  Y + G L   QRVFDR   R
Sbjct: 290 SVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDR 349

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W ++IS+Y  HG   KA+ +F EML NG  P PVTF +VL AC+H GLV++   +F
Sbjct: 350 DVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLF 409

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   +GI+P VEHYACMV +L RA R+ EA + V  M  +P  KVWG+LL    I G+
Sbjct: 410 ESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGN 469

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL +     LF +EP+N GNY+++A++Y++A  WDE  RV++ ++  GL K+PGR W+E
Sbjct: 470 VELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWME 529

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + SFV+ D      EQI+  L +L   M+E+GY+     +L E+E E
Sbjct: 530 VRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 181/416 (43%), Gaps = 74/416 (17%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P   T   ++  CG  S +  G+ VH  ++++    D ++   LIGMY+  GS+DYAR +
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRH 155
            D+   +    ++A+     + G  E+ + L+  M R G+     T+  V+   V +   
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVAS--- 191

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
           E   D                            +L  GKEIH +  +  Y+ ++Y+ T +
Sbjct: 192 ECTAD----------------------------HLTKGKEIHAHLTRRGYNSHVYIMTTL 223

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQP 273
           +D YA+ G +  A  VF+    R+++ W+A+I+ YA +G A +A+  F EM+       P
Sbjct: 224 VDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSP 283

Query: 274 DPVTFTAVLSACA-----------HSGLVDKAWD----IFNAMSGQYGIQPSVE------ 312
           + VT  +VL ACA           H  ++ +  D    + +A+   YG    ++      
Sbjct: 284 NSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVF 343

Query: 313 ---HYACMV---------GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
              H   +V         GV    R+  +  E +      P+   + ++L   S  G VE
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403

Query: 361 LGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            GK + + ++    I+P+   +Y  M +L  +A R DEA ++ + M+     K+ G
Sbjct: 404 EGKRLFESMWRDHGIKPQ-VEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 32/197 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN-SPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R++VSW++MIA Y++ G   E    FREM+  +    P+ VT+VSVLQAC   + + 
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H +++   +   L + +AL+ MY +CG LD  + + D M D+D VS++++IS Y 
Sbjct: 303 QGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           VHG+  KA+ +F+                               EM A+G  P  VT  S
Sbjct: 363 VHGYGRKAIQIFE-------------------------------EMLANGASPTPVTFVS 391

Query: 180 IFSLFSHFSNLKGGKEI 196
           +    SH   ++ GK +
Sbjct: 392 VLGACSHEGLVEEGKRL 408



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 101/212 (47%), Gaps = 10/212 (4%)

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           N +I  L +  + +  L ++ +  +    P+  T   +     H S+L  G  +H + + 
Sbjct: 50  NQLIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRHILD 105

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           N  D++ ++AT +I  Y+  G +  A++VFD+ + R++ +W A+  A    G   + + L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGL----VDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           + +M   G++ D  T+T VL AC  S      + K  +I   ++ + G    V     +V
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLT-RRGYNSHVYIMTTLV 224

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
            + +R   +  A+   + MPV+ +   W A++
Sbjct: 225 DMYARFGCVDYASYVFNGMPVR-NVVSWSAMI 255


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 263/470 (55%), Gaps = 43/470 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G  +E   LF+EM+ + V RPD  T+VSV+ AC QS+ I  G +
Sbjct: 198 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNV-RPDESTMVSVVSACAQSASIELGRQ 256

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y KCG                                
Sbjct: 257 VHSWIDDHGFGSNLKIVNALIDLYIKCGE------------------------------- 285

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A  LF+ +    + +WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 286 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 345

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVA----TAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +H   ++ G+ IH Y   N+  + +  A    T++ID YAK G +  AQ+VFD    RS
Sbjct: 346 CAHLGAIEIGRWIHVYI--NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 403

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W A+I  +A HG A+ A  +F+ M  N I+PD +TF  +LSAC+HSG++D    IF 
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   Y I P +EHY CM+ +L  +    EA E ++ M ++P   +W +LL    +  +V
Sbjct: 464 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANV 523

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+    +L +IEP+N G+Y++++N+Y+ AGRW+E  ++R  + + G+ K+PG S IE 
Sbjct: 524 ELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 583

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
              +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 584 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 209/404 (51%), Gaps = 6/404 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L P+  T   +L++C +S     G ++
Sbjct: 67  NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSKAFREGQQI 125

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +DL++  +LI MY + G L+ AR + D+ S +D VSY+A+I+GY   G++
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYI 185

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F  +    + +WNA+ISG  +   ++  L+L +EM  + VRP+  T+ S+ S  
Sbjct: 186 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 245

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  ++++ G+++H +   + +  N+ +  A+ID Y K G +  A  +F+    + +I W 
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 305

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G ++    I   ++ +
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 365

Query: 305 Y-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--DVEL 361
             G+  +  H   ++ + ++   I EA + V    +  S   W A+++G ++ G  +   
Sbjct: 366 LKGVANASSHRTSLIDMYAKCGDI-EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 424

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             F      EIEP++   ++ + +  S +G  D    +   MKE
Sbjct: 425 DIFSRMRKNEIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMKE 467



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 16/207 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN++I GY+    Y+E   LF+EML S    P+ VT++S+L AC     I  
Sbjct: 296 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEI 354

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G  +H + I   +K    + NA      LI MYAKCG ++ A+ + D + ++   S++A+
Sbjct: 355 GRWIHVY-INKRLK---GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAM 410

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----G 169
           I G+ +HG    A D+F  M++  +   +    GL+    H  +LDL R +  S      
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYK 470

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEI 196
           + P       +  L  H    K  +E+
Sbjct: 471 ITPKLEHYGCMIDLLGHSGLFKEAEEM 497



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 31/197 (15%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   ++   + L L   M + G+ PN  T   +    + 
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 115

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVA-------------------------------TAI 215
               + G++IHG+ +K  YD ++YV                                TA+
Sbjct: 116 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 175

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           I  YA  G++  AQ++FD    + ++ W A+IS YA  G+  +A+ LF EM+   ++PD 
Sbjct: 176 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 235

Query: 276 VTFTAVLSACAHSGLVD 292
            T  +V+SACA S  ++
Sbjct: 236 STMVSVVSACAQSASIE 252


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 280/509 (55%), Gaps = 45/509 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSD 57
           +S  +I ++N+++  +SQ   +    + F   L   N+P   PD  T  SVL+AC   + 
Sbjct: 85  LSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAP--NPDEYTFTSVLKACAGLAQ 142

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS------------------------- 92
           ++ G +VH FV +   + +L++ N+L+ +Y K G                          
Sbjct: 143 VLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISG 202

Query: 93  ------LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
                 +D AR + D M +K+ VS+S +ISGY   G +E+A  LF+ M    + +WNA+I
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMI 262

Query: 147 SGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           +G  QN ++   ++L R+MQ  G + PN VT+ S+ S  +H   L  GK IH +  +N+ 
Sbjct: 263 AGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKI 322

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           +  +++  A+ D YAK G +  A+ VF     R +I W+ II   A +G A++A + F E
Sbjct: 323 EVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAE 382

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M+ +G++P+ ++F  +L+AC H+GLVDK  + F+ M   YGI P +EHY C+V +LSRA 
Sbjct: 383 MIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAG 442

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           R+ +A   ++ MP++P+  VWGALL G  I  D E G+ V   + E++  ++G+ + +AN
Sbjct: 443 RLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLAN 502

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           +Y+  GR D+A   R +M+++   K PG SWIE +  +  F   D+S  +S +IY ++  
Sbjct: 503 VYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRE 562

Query: 446 LLGLMREEGYVL--------LDEVEEESA 466
           L   M+  GY          +DE E+E A
Sbjct: 563 LKWKMKVAGYKPKTDLVIHNIDEEEKEDA 591


>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
 gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
          Length = 429

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 242/421 (57%), Gaps = 40/421 (9%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           L  +   + SVL+ CG   D+  G  +H+ +++  I+ D+++ ++LI MY+KCG ++ AR
Sbjct: 6   LGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVEKAR 65

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--------------------- 136
            + D M +KD V+ +A++SGY  HGF ++   L   M++                     
Sbjct: 66  RVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKG 125

Query: 137 ------------------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                             P + +W +VISGLVQN R+EA  D  ++M   G  P + TIS
Sbjct: 126 DDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATIS 185

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ +  +  +N++ G+EIHGYAV  R + +IYV +A++D YAK GF+  A  +F     R
Sbjct: 186 TVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPER 245

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + + W ++I  YA HG   +A+ LF++M  + G + D +TFTAVL+AC+H+G+V+    +
Sbjct: 246 NTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSL 305

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F  M  +Y I P +EHYACMV +L RA  ++EA + + KMPVKP   VWGALL      G
Sbjct: 306 FLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGACRNHG 365

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D+ L +    HL E+EPEN GN ++M+NLY+ AG W+   R ++ MK   L   PG SWI
Sbjct: 366 DIGLAEVAARHLAELEPENAGNNMLMSNLYADAGSWENVSRSKKMMKRKRLKNFPGCSWI 425

Query: 418 E 418
           E
Sbjct: 426 E 426



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 122/257 (47%), Gaps = 41/257 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D++SW S+I+G  Q    E     F++ML    L P   T+ +VL AC   +++  G E+
Sbjct: 145 DVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFL-PTSATISTVLAACATMANVRRGREI 203

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + +   ++ D+++ +AL+ MYAKCG +  A  L   M +++ V+++++I GY  HG+ 
Sbjct: 204 HGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYC 263

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A++LF  M++                              + G + + +T +++ +  
Sbjct: 264 DEAIELFDQMEK------------------------------SEGNKLDHLTFTAVLTAC 293

Query: 185 SHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
           SH   ++ G+ +       Y +  R +        ++D   + G L+ A  +  +   + 
Sbjct: 294 SHAGMVEHGQSLFLLMQQKYKIVPRLEH----YACMVDLLGRAGNLNEAYDMIKKMPVKP 349

Query: 239 SLIIWTAIISAYAAHGD 255
            L +W A++ A   HGD
Sbjct: 350 DLFVWGALLGACRNHGD 366



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 119/246 (48%), Gaps = 7/246 (2%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           MQ  G+  N   I S+     H  +++ G+ +H   +K   + ++YV +++ID Y+K G 
Sbjct: 1   MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A+RVFDR   + L+   A++S Y  HG A +  +L ++M   GI+P+ +T+ +++S 
Sbjct: 61  VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---P 341
            A  G       +F  M    G++P V  +  ++  L +  R   A +   +M  +   P
Sbjct: 121 FAQKGDDAMVSKMFELMISN-GVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLP 179

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
           ++     +L   +   +V  G+ +  +   I  E+   Y+   + ++Y++ G   EA  +
Sbjct: 180 TSATISTVLAACATMANVRRGREIHGYAVVIRVEDD-IYVRSALVDMYAKCGFISEASVL 238

Query: 400 REQMKE 405
              M E
Sbjct: 239 FYMMPE 244



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V+WNSMI GY+  G+ +E   LF +M  S   + D +T  +VL AC  +  +  
Sbjct: 242 MPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEH 301

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G  +   + + +    +++ + C  ++ +  + G+L+ A  ++ +M  K D   + A++ 
Sbjct: 302 GQSLFLLMQQKYKIVPRLEHYAC--MVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLG 359

Query: 117 GYMVHG 122
               HG
Sbjct: 360 ACRNHG 365


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 266/473 (56%), Gaps = 7/473 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S +++V +N++++ Y Q G   E   +  EML     RPD VT++S + AC Q  D+  G
Sbjct: 285 SDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKG-QRPDKVTMLSTIAACAQLGDLSVG 343

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
              H +V  + ++    I NA+I MY KCG  + A  + D MS+K  V+++++I+G +  
Sbjct: 344 KSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRD 403

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +E A+ +F  M    L +WN +I  +VQ +  E  +DL+REMQ  G++ + VT+  I 
Sbjct: 404 GELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIA 463

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S   +   L   K I+ Y  KN    ++ + TA++D +++ G    A RVF+  + R + 
Sbjct: 464 SACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVS 523

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTA I   A  G+A  A+ LF+EML   ++ D   F A+L+A +H G VD+   +F AM
Sbjct: 524 AWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAM 583

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              +G+ P + HY CMV +L RA  + EA + +  MP+KP+  +WG+ L       +VE 
Sbjct: 584 EKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEF 643

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
             +  + + ++ PE  G +++++N+Y+ AG+W++  RVR QMKE G  K+ G S IE  G
Sbjct: 644 ANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHG 703

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAYV 468
            ++ F + D S  ++ QI L+L+ +   + + GY      VL+D  E+E  ++
Sbjct: 704 LIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHL 756



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 169/391 (43%), Gaps = 65/391 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW S+I GYS     +E   LF EM+   V  P+ VT+V  + AC +  D+  
Sbjct: 183 MLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGV-EPNPVTMVCAISACAKLKDLEL 241

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V N + E  +K +  + NAL+ MY KCG +   R + DE SDK+ V Y+ I+S Y+ 
Sbjct: 242 GKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQ 301

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   + +                             VLD   EM   G RP+ VT+ S 
Sbjct: 302 HGLAGEVL----------------------------VVLD---EMLQKGQRPDKVTMLST 330

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L  GK  H Y  +N  +R   ++ AIID Y K G    A +VFD    +++
Sbjct: 331 IAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTV 390

Query: 241 IIWTAIISAYAAHGDA-------------------------------SKAVSLFNEMLNN 269
           + W ++I+     G+                                 +A+ L  EM N 
Sbjct: 391 VTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQ 450

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           GI+ D VT   + SAC + G +D A  I+  +  +  I   ++    +V + SR      
Sbjct: 451 GIKGDRVTMVGIASACGYLGALDLAKWIYTYIE-KNDIHIDMQLGTALVDMFSRCGDPLN 509

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           A      M  K     W A +   ++ G+ +
Sbjct: 510 AMRVFENME-KRDVSAWTAAIRVKAVEGNAK 539



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 189/412 (45%), Gaps = 46/412 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +K  + + N++I GY+  G  +E   ++  M+    + PD  T   +L AC +      G
Sbjct: 82  TKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEG 141

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           ++VH  V++  +  DL++ N+LI  YA CG +D  R + DEM +++ VS++++I+GY V 
Sbjct: 142 VQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVV 201

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
              ++A+ LF                                EM   GV PN VT+    
Sbjct: 202 NMAKEAVCLF-------------------------------FEMVEVGVEPNPVTMVCAI 230

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +   +L+ GK++     +     N  V  A++D Y K G ++  + +FD F  ++L+
Sbjct: 231 SACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLV 290

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV-----DKAWD 296
           ++  I+S Y  HG A + + + +EML  G +PD VT  + ++ACA  G +       A+ 
Sbjct: 291 MYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYV 350

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
             N +     I  ++      + +  +  +   A +    M  K +   W +L+ G    
Sbjct: 351 FRNGLERLDNISNAI------IDMYMKCGKREAACKVFDSMSNK-TVVTWNSLIAGLVRD 403

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G++EL   +     E+   N  ++  M     QA  ++EA  +  +M+  G+
Sbjct: 404 GELELALRI---FGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGI 452



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + ++VSWN+MI    Q   +EE   L REM N  + + D VT+V +  ACG    +  
Sbjct: 416 MPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGI-KGDRVTMVGIASACGYLGALDL 474

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              ++ ++ ++ I +D+ +  AL+ M+++CG    A  + + M  +D  +++A I    V
Sbjct: 475 AKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAV 534

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-----QASGVRPNAV 175
            G  + A++LF  M +  +   + V   L+    H   +D  R++     +  GV P  V
Sbjct: 535 EGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIV 594

Query: 176 TISSIFSLF 184
               +  L 
Sbjct: 595 HYGCMVDLL 603


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 257/477 (53%), Gaps = 11/477 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+++  ++WN+MI+GY   G +E+   LFR+M    V + D  T  SV+ AC      + 
Sbjct: 249 MTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGV-QVDESTYTSVISACADGGFFLL 307

Query: 61  GMEVHNFVIESHIKMD----LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G +VH +++++ +  D    L + N LI +Y K G +D AR +  EM  KD ++++ ++S
Sbjct: 308 GKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLS 367

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G +E+A   F  M    L TW  +ISGL QN   E  L L  +M+  G  PN   
Sbjct: 368 GYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYA 427

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +   +  S    L+ G+++H   V   +D  + V  A+I  YA+ G +  A+ +F    
Sbjct: 428 FAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMP 487

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
               + W ++I+A   HG   KA+ L+ +ML  GI PD  TF  VLSAC+H+GLV++   
Sbjct: 488 FVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNR 547

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            FN+M   YGI P  +HYA M+ +  RA + S+A   +  MP +  A +W ALL G    
Sbjct: 548 YFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTH 607

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+++LG    + LF++ P++ G Y++++N+Y+  GRW++  R R+ M++ G+ K P  SW
Sbjct: 608 GNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSW 667

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEESAY 467
            E    +  F+  DT   +   IY  LE+L      +G + +  YVL D   E   Y
Sbjct: 668 TEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEY 724



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 140/547 (25%), Positives = 240/547 (43%), Gaps = 102/547 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD V +N+MI GYS          LFR M      +PD  T  SVL A    S ++F
Sbjct: 107 LDMRDTVFYNAMITGYSHMNDGHSAIELFRAM-RWANFQPDDFTFASVLSA----STLIF 161

Query: 61  GME-----VHNFVIESHIKMDLWICNALIGMYAKCGS---------LDYARALLDEMSDK 106
             E     +H  V++  I++   + NAL+ +Y KC S         +  AR L DEM  +
Sbjct: 162 YDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKR 221

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +E  ++ +I+GY+ +G +  A ++   M ++PG++ WNA+ISG + +   E  L L R+M
Sbjct: 222 NEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA-WNAMISGYLHHGLFEDALTLFRKM 280

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRN--IYVATAIIDTYAK 221
           +  GV+ +  T +S+ S  +       GK++H Y +KN    DR+  + V   +I  Y K
Sbjct: 281 RLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWK 340

Query: 222 TGFLHGAQRV-------------------------------FDRFKGRSLIIWTAIISAY 250
            G + GA+++                               F +   ++L+ WT +IS  
Sbjct: 341 YGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGL 400

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLV----DKAW 295
           A +G   +A+ LFN+M  +G +P+   F   ++AC+           H+ +V    D   
Sbjct: 401 AQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTL 460

Query: 296 DIFNAMSGQYG-------------IQPSVE--HYACMVGVLSRARRISEATEFVSKM--- 337
            + NAM   Y                P V+   +  M+  L +     +A E   +M   
Sbjct: 461 SVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKE 520

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWD 394
            + P  + +  +L   S +G VE G    + + E   I P    +Y  M +L+ +AG++ 
Sbjct: 521 GILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAP-GEDHYARMIDLFCRAGKFS 579

Query: 395 EADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           +A  V + M     A I    W     G ++    D   + +E+++ ++ +  G      
Sbjct: 580 DAKNVIDSMPFEARAPI----WEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGT----- 630

Query: 455 YVLLDEV 461
           YVLL  +
Sbjct: 631 YVLLSNM 637



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 179/406 (44%), Gaps = 57/406 (14%)

Query: 52  CGQS-SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110
           C Q+ S       VH  VI S  K+   I N LI +Y K     YAR L DE+   D ++
Sbjct: 22  CPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIA 81

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMKRPGLST--WNAVISGLVQNNRHEAVLDLVREMQAS 168
            + +I+ Y   G ++ A ++F         T  +NA+I+G    N   + ++L R M+ +
Sbjct: 82  RTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWA 141

Query: 169 GVRPNAVTISSIFSLFSH-FSNLKGGKEIHGYAVK------------------------- 202
             +P+  T +S+ S  +  F + +   ++HG  VK                         
Sbjct: 142 NFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPL 201

Query: 203 -----------NRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
                        +D    RN ++ T +I  Y + G L GA+ + D    +  I W A+I
Sbjct: 202 VSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMI 261

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--LVDK---AWDIFNAMS 302
           S Y  HG    A++LF +M   G+Q D  T+T+V+SACA  G  L+ K   A+ + N ++
Sbjct: 262 SGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELN 321

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
                  SV +   ++ +  +  ++  A +   +MPVK     W  LL G   +G +E  
Sbjct: 322 PDRDFLLSVGN--TLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLSGYVNAGRMEEA 378

Query: 363 KFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           K      F   PE N   + +M +  +Q G  ++A ++  QMK  G
Sbjct: 379 K----SFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDG 420


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 260/468 (55%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y+E   LF++M+ + V RPD  T+V+V+ AC QS  I  G +
Sbjct: 186 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACAQSGSIELGRQ 244

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y+KCG L+ A  L + +  KD +S             
Sbjct: 245 VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVIS------------- 291

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 292 ------------------WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 333

Query: 184 FSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID YAK G +  A +VF+    +SL 
Sbjct: 334 CAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 393

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A  +  +F+ M  NGI+PD +TF  +LSAC+HSG++D    IF +M
Sbjct: 394 SWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 453

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y + P +EHY CM+ +L  +    EA E ++ M ++P   +W +LL    + G+VEL
Sbjct: 454 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVEL 513

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+    +L +IEPEN G+Y++++N+Y+ AGRW+E    R  + + G+ K+PG S IE   
Sbjct: 514 GESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDS 573

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 574 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 621



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 205/408 (50%), Gaps = 6/408 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + +++ WN+M  G++          L+  M++  +L P+  T   +L++C +S     
Sbjct: 51  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKSKAFKE 109

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++    +DL++  +LI MY + G L+ A  + DE   +D VSY+A+I GY  
Sbjct: 110 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYAS 169

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G++E A  +F  +    + +WNA+ISG  +   ++  L+L ++M  + VRP+  T+ ++
Sbjct: 170 RGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 229

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +++ G+++H +   + +  N+ +  A+ID Y+K G L  A  +F+    + +
Sbjct: 230 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDV 289

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D    I   
Sbjct: 290 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 349

Query: 301 MSGQY-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-- 357
           +  +  G+  +      ++ + ++   I  A +  + + +  S   W A+++G ++ G  
Sbjct: 350 IDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRA 408

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           D     F       IEP++   ++ + +  S +G  D    +   M +
Sbjct: 409 DASFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMTQ 455



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 33/257 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 44  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 103

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVA-------------------------------TAI 215
               K G++IHG+ +K   D ++YV                                TA+
Sbjct: 104 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTAL 163

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           I  YA  G++  AQ++FD    + ++ W A+IS YA  G+  +A+ LF +M+   ++PD 
Sbjct: 164 IKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 223

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            T   V+SACA SG ++    + + +   +G   +++    ++ + S+   +  A     
Sbjct: 224 STMVTVVSACAQSGSIELGRQVHSWID-DHGFGSNLKIVNALIDLYSKCGELETACGLFE 282

Query: 336 KMPVKPSAKVWGALLYG 352
            +P K     W  L+ G
Sbjct: 283 GLPYKDVIS-WNTLIGG 298


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 262/452 (57%), Gaps = 5/452 (1%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN++I  +S          +F +ML + V  PD +T   +++A  +  +   GM VH  
Sbjct: 80  NWNTLIRAFSNTKNPNPSITVFIKMLQNGV-SPDYLTYPFLVKATSKLLNQELGMAVHVH 138

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           +++S  ++D +I N+LI MYA C  +  AR + DEM  K+ V+++A++ GY   G +  A
Sbjct: 139 IVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMA 198

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            ++F +M    + +W+++I G V+   +   + L   M   G   N VT+ S     +H 
Sbjct: 199 REVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHL 258

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGRSLIIWTA 245
             L+ G+ +H Y V+N     I + T+++D YAK G +H A  VF     +   ++IW A
Sbjct: 259 GALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNA 318

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           II   A HG   +A++LF EM   GI PD +T+  +LS CAH GLV++AW  F+ +  ++
Sbjct: 319 IIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLR-KH 377

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G+ P VEHYACMV  LSRA ++SEA +F+ +MPV+P++ + GALL G    G +++ K V
Sbjct: 378 GMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAKVV 437

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
              L E++P + G Y+ ++N+Y+   RWD+A  +RE M+  G+ K PG S+IE  G L  
Sbjct: 438 GRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHR 497

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMRE-EGYV 456
           F+A D +    EQI+++L  ++  M+  E YV
Sbjct: 498 FMAHDKTHGDCEQIFMMLNLIVDQMKPIEDYV 529



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M ++D+VSW+S+I GY +G  Y E  ALF  M  + P+   + VT+VS L AC     + 
Sbjct: 205 MPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPM--ANEVTLVSALCACAHLGALE 262

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS--DKDEVSYSAIISG 117
            G  +H +++E+ + + + +  +L+ MYAKCG++  A  +    S  + D + ++AII G
Sbjct: 263 HGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGG 322

Query: 118 YMVHGFVEKAMDLFQVMKRPGL 139
              HG +++AM+LF  MK  G+
Sbjct: 323 LATHGLIKEAMNLFCEMKMVGI 344



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 157/420 (37%), Gaps = 102/420 (24%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P    WN +I            + +  +M  +GV P+ +T   +    S   N + G  +
Sbjct: 76  PTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAV 135

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H + VK+ ++ + ++  ++I  YA    +  A++VFD    ++L+ W A++  YA  GD 
Sbjct: 136 HVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDL 195

Query: 257 S-------------------------------KAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           +                               +A++LF  M  +G   + VT  + L AC
Sbjct: 196 NMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCAC 255

Query: 286 AHSG--------------------------LVD---------KAWDIFNAMSGQYGIQPS 310
           AH G                          LVD         +A  +F A S Q   +  
Sbjct: 256 AHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQ---EAD 312

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCD 367
           V  +  ++G L+    I EA     +M    + P    +  LL   +  G VE   +  D
Sbjct: 313 VLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFD 372

Query: 368 HLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK-------------------ES 406
            L +  + P+   +Y  M +  S+AG+  EA +   QM                    + 
Sbjct: 373 CLRKHGMIPK-VEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKL 431

Query: 407 GLAKIPGRSWIECSG-------GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLD 459
            +AK+ GR  +E          GL +  A D   D ++ I   +ER  G+ +  G+  ++
Sbjct: 432 DIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMER-KGVKKSPGFSFIE 490


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 266/476 (55%), Gaps = 42/476 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
           + KR+IVSW SMI GY   G   +  +LF+++L     +   +  D + +VSV+ AC + 
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRV 196

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS--LDYARALLDEMSDKDEVSYSA 113
           +       +H+FVI+      + + N L+  YAK G   +  AR + D++ DKD VSY++
Sbjct: 197 AAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           I+S Y   G   +A D+F+ + +  + T+N +                            
Sbjct: 257 IMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCI---------------------------- 288

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T+S++    SH   L+ GK IH   ++   + ++ V T+IID Y K G +  A+  FD
Sbjct: 289 --TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFD 346

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R K +++  WTA+I+ Y  HG A+KA+ LF  M+++G++P+ +TF +VL+AC+H+GL D 
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDV 406

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            W  FNAM G++G++P +EHY CMV +L RA  + +A + + KM ++P + +W +LL   
Sbjct: 407 GWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAAC 466

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I  +VEL +     LFE++P N G Y++++++Y+ +GRW + +RVR  MK  GL K PG
Sbjct: 467 RIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPG 526

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            S +E +G +  F+  D    + E+IY  L  L   + E GYV     +  +V+EE
Sbjct: 527 FSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 172/360 (47%), Gaps = 31/360 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K D+ SWNS+IA  ++ G   E    F  M     L P   +    ++AC    DI  
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALRAFSSM-RKLSLYPTRSSFPCAIKACSSLLDIFS 94

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H        + D+++ +ALI MY+ CG L+ AR + DE+  ++ VS++++I GY +
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G    A+ LF+ +              L++ N  +A + L           +++ + S+
Sbjct: 155 NGNALDAVSLFKDL--------------LIEENDDDATMFL-----------DSMGMVSV 189

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK--TGFLHGAQRVFDRFKGR 238
            S  S  +     + IH + +K  +DR + V   ++D YAK   G +  A+++FD+   +
Sbjct: 190 ISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK 249

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDI 297
             + + +I+S YA  G +++A  +F  ++   +   + +T + VL A +HSG +     I
Sbjct: 250 DRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCI 309

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            + +  + G++  V     ++ +  +  R+  A     +M  K + + W A++ G  + G
Sbjct: 310 HDQVI-RMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNK-NVRSWTAMIAGYGMHG 367


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 255/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++ VSWN+MI GY+Q G   E  ALF  M+   V   D V+V++ LQACG+   +  
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTD-VSVLAALQACGELGCLDE 280

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH  ++   +  ++ + NALI MY+KC  +D A  + DE+  + +VS          
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVS---------- 330

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN   E  + L   MQ   V+P++ T+ S+
Sbjct: 331 ---------------------WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSV 369

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+    + IHGY+++   D+++YV TA+ID YAK G ++ A+ +F+  + R +
Sbjct: 370 IPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHV 429

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y +HG    AV LF EM + GI P+  TF +VLSAC+H+GLVD+  + F +
Sbjct: 430 ITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTS 489

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P +EHY  MV +L RA ++ EA  F+ KMP+ P   V+GA+L    +  +VE
Sbjct: 490 MKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVE 549

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     +FE+ P+    ++++AN+Y+ A  W +  RVR  M+++GL K PG S I+  
Sbjct: 550 LAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLK 609

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F +  T+  ++++IY  L +L+  ++  GYV
Sbjct: 610 NEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYV 645



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 38/323 (11%)

Query: 36  PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY 95
           PVLR    T  S+L+ C    D+  G  VH  +    I  +     AL  MYAKC     
Sbjct: 57  PVLR----TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPAD 112

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           AR + D M  +D V+                               WNA+++G  +N   
Sbjct: 113 ARRVFDRMPVRDRVA-------------------------------WNALVAGYARNGLA 141

Query: 156 EAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
              +++V  MQ   G RP+++T+ S+    ++   L   +E H +A+++  +  + VATA
Sbjct: 142 RMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATA 201

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           I+D Y K G +  A+ VFD    ++ + W A+I  YA +GD+ +A++LFN M+  G+   
Sbjct: 202 ILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVT 261

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            V+  A L AC   G +D+   +   +  + G+  +V     ++ + S+ +R+  A+   
Sbjct: 262 DVSVLAALQACGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLASHVF 320

Query: 335 SKMPVKPSAKVWGALLYGASISG 357
            ++  +     W A++ G + +G
Sbjct: 321 DELDRRTQVS-WNAMILGCAQNG 342



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 177/412 (42%), Gaps = 46/412 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V+WN+++AGY++ G       +   M      RPD +T+VSVL AC  +  +  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E H F I S ++  + +  A++  Y KCG +  AR + D M  K+ VS++A+I GY  
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+ LF  M   G+   +               + ++  +QA G           
Sbjct: 240 NGDSREALALFNRMVEEGVDVTD---------------VSVLAALQACG----------- 273

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    L  G  +H   V+   D N+ V  A+I  Y+K   +  A  VFD    R+ 
Sbjct: 274 -----ELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKAWDIFN 299
           + W A+I   A +G +  AV LF  M    ++PD  T  +V+ A A  S  +   W   +
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARW--IH 386

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             S +  +   V     ++ + ++  R++ A    +    +     W A+++G    G  
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER-HVITWNAMIHGYGSHG-- 443

Query: 360 ELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             GK   + LFE      I P  T  ++ + +  S AG  DE       MKE
Sbjct: 444 -FGKAAVE-LFEEMKSIGIVPNET-TFLSVLSACSHAGLVDEGREYFTSMKE 492



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 6/247 (2%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M ++G  P   T +S+  L +   +L  G+ +H        D     ATA+ + YAK   
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLS 283
              A+RVFDR   R  + W A+++ YA +G A  A+ +   M    G +PD +T  +VL 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           ACA++  +    +  +A + + G++  V     ++    +   I  A      MP K S 
Sbjct: 170 ACANARALAACREA-HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSV 228

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS--QAGRWDEADRVRE 401
             W A++ G + +GD      + + + E E  +  +  ++A L +  + G  DE  RV E
Sbjct: 229 S-WNAMIDGYAQNGDSREALALFNRMVE-EGVDVTDVSVLAALQACGELGCLDEGMRVHE 286

Query: 402 QMKESGL 408
            +   GL
Sbjct: 287 LLVRIGL 293


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 253/456 (55%), Gaps = 8/456 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVF 60
           + RD+VSW S IA  ++ G      A    ML+SP    P+ VT+++VL AC  S     
Sbjct: 28  APRDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPL 87

Query: 61  GMEVHNFVIESHIKM---DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
              +   +    +K+    L +   L   Y        A  L D M  +  V+Y+ ++SG
Sbjct: 88  ARPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSG 147

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
            M +G V+ A ++F  M  P   +W A+I G V+N RH+  +D  R M    V P+ VT+
Sbjct: 148 LMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTL 207

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            ++ S  +    L  G  +H   ++   +RN+ VA ++ID YA+ G +  A +VF   + 
Sbjct: 208 IAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRK 267

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+++ W ++I   AA+G  ++A+ LF EM   G +PD VT T VL+AC+H+GL +     
Sbjct: 268 RTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRY 327

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ M+ +YGI   +EHY C+V +L RA R+ EA   V  MP++P+  V GALL G  + G
Sbjct: 328 YDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHG 387

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D+++ + +  HLFE++P    NY++++N+Y+  G+WD A +VR  MK  G+ K PG S +
Sbjct: 388 DLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIV 447

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           E  G +  FV+ D S  ++E+I     ++LGL+R E
Sbjct: 448 EIDGDVHEFVSSDRSHPQAEEI----GQMLGLLRHE 479


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 250/426 (58%), Gaps = 1/426 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V+W  M+  Y     Y E   L  +M  S V+ PD V + +VL  CG +  +  
Sbjct: 54  MPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVV-PDQVILATVLSTCGHTRHLRS 112

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+++  S I +D  + +ALI MYA C  ++ A  +   M  KD VS +A++ GY  
Sbjct: 113 GKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAK 172

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +E A  +F  M    + +W+A+IS   +NN+   VL+L  +MQ  GV P+ +T+ S+
Sbjct: 173 NGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSV 232

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++  +L   + IH     + + + + +  A+ID ++K G L  A  +F+    +++
Sbjct: 233 ISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNV 292

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT++I+A+A HGD   A++LF +M   G++P+ VTF  +L AC H+GLV +   +F  
Sbjct: 293 ITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFEC 352

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P  EHY CMV ++ RA+ + EA + +  M ++P+  +WG+LL    + GD+E
Sbjct: 353 MLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIE 412

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F    + E++P + G Y++++N+++++G W+ A ++R  MK  G++K  G SW+E +
Sbjct: 413 LGEFAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELN 472

Query: 421 GGLQSF 426
             +  F
Sbjct: 473 CTVHGF 478



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 151/335 (45%), Gaps = 68/335 (20%)

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +D V G   H   +      D ++  AL+G YA C  +  AR + D M ++D V++  ++
Sbjct: 9   TDTVRG--THGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVML 66

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             Y                                QN R    L L+ +M+ S V P+ V
Sbjct: 67  DSYFN-----------------------------TQNYRE--TLLLLNKMKRSRVVPDQV 95

Query: 176 TISSIFSLFSHFSNLKGGKEIHGY--------------AVKNRY---------------- 205
            ++++ S   H  +L+ GK IH Y              A+ N Y                
Sbjct: 96  ILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGM 155

Query: 206 -DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
             +++  +TA++  YAK G +  A+ +F+    + ++ W+A+ISAYA +   S+ ++LFN
Sbjct: 156 QRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFN 215

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           +M   G+ PD +T  +V+SACA+ G +DKA W   +++ G +G    +     ++ + S+
Sbjct: 216 KMQGCGVSPDEITMLSVISACANIGSLDKARW--IHSIVGNHGFYKILSICNALIDMFSK 273

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              ++ A    + MP K +   W +++   ++ GD
Sbjct: 274 CGSLTLALNMFNAMPRK-NVITWTSMIAAFAMHGD 307


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 251/454 (55%), Gaps = 32/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V+W S+I+G+ Q   Y+E    FR M  + +++PD   + S++ AC     +  
Sbjct: 403 MKERDVVAWGSVISGFCQNRKYKEALDFFRAM-EADLVKPDSDIMASIISACTGLEKVDL 461

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H FVI+S +++D+++ ++L+ MY+K                               
Sbjct: 462 GCTIHGFVIKSGLQLDVFVASSLLDMYSK------------------------------- 490

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF E+A ++F  M    L  WN++IS   +NN  +  ++L  ++  + + P++V+ +S+
Sbjct: 491 FGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSV 550

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK +HGY V+     ++ V   +ID Y K G L  AQ +F+R   ++L
Sbjct: 551 LAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNL 610

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I  Y +HG+ SKA+ LF+EM ++GI+PD VTF ++LS+C HSGL+++   +F  
Sbjct: 611 VAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEM 670

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI+P +EHY  +V +  RA  + +A  FV  MPV+P   +W +LL    I  ++E
Sbjct: 671 MKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLE 730

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V + L  +EP    NY+ + NLY +A  WD    +R  MKE GL K PG SWIE  
Sbjct: 731 LGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVR 790

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
             +  F + D S   + +IY  L  L   M ++G
Sbjct: 791 NKVDVFYSGDCSSPITTEIYDTLSSLKRNMIKKG 824



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 200/433 (46%), Gaps = 77/433 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++I  WN++I+ Y   G+  +   ++++M    VL  D  T+++VL +   +     G  
Sbjct: 305 KEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLS-DSFTILNVLTSSSMAGLYDLGRL 363

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +++  ++  + I +AL+ MY+K G  +YA ++                        
Sbjct: 364 IHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSI------------------------ 399

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                  F  MK   +  W +VISG  QN +++  LD  R M+A  V+P++  ++SI S 
Sbjct: 400 -------FSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISA 452

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    +  G  IHG+ +K+    +++VA++++D Y+K GF   A  +F     ++L+ W
Sbjct: 453 CTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAW 512

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----------SGLVDK 293
            +IIS Y  +     +++LF+++L N + PD V+FT+VL+A +            G + +
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVR 572

Query: 294 AWDIF-----NAMSGQY---GIQPSVEH------------YACMVGVLSRARRISEATEF 333
            W  F     N +   Y   G+    +H            +  M+G        S+A E 
Sbjct: 573 LWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIEL 632

Query: 334 VSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFE-------IEPENTGNYIIM 383
             +M    +KP    + +LL   + SG +E G     HLFE       IEP    +Y+ +
Sbjct: 633 FDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGL----HLFEMMKMKFGIEPR-MEHYVNI 687

Query: 384 ANLYSQAGRWDEA 396
            +LY +AG   +A
Sbjct: 688 VDLYGRAGCLGDA 700



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/490 (22%), Positives = 200/490 (40%), Gaps = 93/490 (18%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVS-----VLQACGQSSD 57
           + +IV+WN MI G+ + G +E     +       + + + V VVS      L ACGQ   
Sbjct: 203 RSNIVAWNVMIGGFGENGLWENSLEYYL------LAKTENVKVVSSSFTCTLSACGQGEF 256

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           + FG +VH   I+   + D ++  +L+ MY KC  ++ A  + +E+ DK+          
Sbjct: 257 VSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKE---------- 306

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                +  WNA+IS  V N      L + ++M+   V  ++ TI
Sbjct: 307 ---------------------IELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTI 345

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            ++ +  S       G+ IH   VK     +I + +A++  Y+K G  + A  +F   K 
Sbjct: 346 LNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKE 405

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R ++ W ++IS +  +    +A+  F  M  + ++PD     +++SAC     VD    I
Sbjct: 406 RDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTI 465

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK----------------- 340
            +    + G+Q  V   + ++ + S+      A    S MP+K                 
Sbjct: 466 -HGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNL 524

Query: 341 -----------------PSAKVWGALLYGASISGDVELGKFVCDHL------FEIEPENT 377
                            P +  + ++L   S    +  GK V  +L      F+++ ENT
Sbjct: 525 PDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENT 584

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGL----AKIPGR-SWIECSGGLQSFVAKDTS 432
                + ++Y + G    A  + E++ E  L    + I G  S  ECS  ++ F    +S
Sbjct: 585 -----LIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSS 639

Query: 433 GDKSEQIYLI 442
           G K + +  +
Sbjct: 640 GIKPDDVTFL 649



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 157/365 (43%), Gaps = 58/365 (15%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T  S+L+AC   S++ +G  +H+ +I + +  D +I ++LI +Y KCG+   A  + D++
Sbjct: 55  TYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQL 114

Query: 104 SDK----DEVS-YSAIISGYMVHGFVEKAMDLFQVMK----------------------- 135
                  D+V+ +++II GY   G +E+ M  F  M+                       
Sbjct: 115 PKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEGKQIHSYIVRNMLNFDP 174

Query: 136 ----------------------------RPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                                       R  +  WN +I G  +N   E  L+     + 
Sbjct: 175 FLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKT 234

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
             V+  + + +   S       +  GK++H  A+K  ++ + YV T+++  Y K   +  
Sbjct: 235 ENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIES 294

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A++VF+    + + +W A+ISAY  +G A  A+ ++ +M    +  D  T   VL++ + 
Sbjct: 295 AEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSM 354

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
           +GL D    I   +  +  +Q S+   + ++ + S+    + A    S M  +     WG
Sbjct: 355 AGLYDLGRLIHTEIVKR-PLQSSITIQSALLTMYSKFGDSNYANSIFSTMKER-DVVAWG 412

Query: 348 ALLYG 352
           +++ G
Sbjct: 413 SVISG 417



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I  LVQ  ++   L L  +   S V     T  S+    +  SNL+ GK IH   +    
Sbjct: 28  IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-----SLIIWTAIISAYAAHGDASKAV 260
             + Y+ +++I+ Y K G    A +VFD+          + IW +II  Y   G   + +
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 261 SLFNEMLNNGIQ 272
             F  M ++G +
Sbjct: 145 VQFGRMQSSGYK 156


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 255/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++ VSWN+MI GY+Q G   E  ALF  M+   V   D V+V++ LQACG+   +  
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTD-VSVLAALQACGELGCLDE 280

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM VH  ++   +  ++ + NALI MY+KC  +D A  + DE+  + +VS          
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVS---------- 330

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN   E  + L   MQ   V+P++ T+ S+
Sbjct: 331 ---------------------WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSV 369

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+    + IHGY+++   D+++YV TA+ID YAK G ++ A+ +F+  + R +
Sbjct: 370 IPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHV 429

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y +HG    AV LF EM + GI P+  TF +VLSAC+H+GLVD+  + F +
Sbjct: 430 ITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTS 489

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P +EHY  MV +L RA ++ EA  F+ KMP+ P   V+GA+L    +  +VE
Sbjct: 490 MKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVE 549

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     +FE+ P+    ++++AN+Y+ A  W +  RVR  M+++GL K PG S I+  
Sbjct: 550 LAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLK 609

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F +  T+  ++++IY  L +L+  ++  GYV
Sbjct: 610 NEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYV 645



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 38/323 (11%)

Query: 36  PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY 95
           PVLR    T  S+L+ C    D+  G  VH  +    I  +     AL  MYAKC     
Sbjct: 57  PVLR----TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPAD 112

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           AR + D M  +D V+                               WNA+++G  +N   
Sbjct: 113 ARRVFDRMPVRDRVA-------------------------------WNALVAGYARNGLA 141

Query: 156 EAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
              +++V  MQ   G RP+++T+ S+    ++   L   +E H +A+++  +  + VATA
Sbjct: 142 RMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATA 201

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           I+D Y K G +  A+ VFD    ++ + W A+I  YA +GD+ +A++LFN M+  G+   
Sbjct: 202 ILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVT 261

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            V+  A L AC   G +D+   +   +  + G+  +V     ++ + S+ +R+  A+   
Sbjct: 262 DVSVLAALQACGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLASHVF 320

Query: 335 SKMPVKPSAKVWGALLYGASISG 357
            ++  +     W A++ G + +G
Sbjct: 321 DELDRRTQVS-WNAMILGCAQNG 342



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 177/412 (42%), Gaps = 46/412 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V+WN+++AGY++ G       +   M      RPD +T+VSVL AC  +  +  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E H F I S ++  + +  A++  Y KCG +  AR + D M  K+ VS++A+I GY  
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+ LF  M   G+   +               + ++  +QA G           
Sbjct: 240 NGDSREALALFNRMVEEGVDVTD---------------VSVLAALQACG----------- 273

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    L  G  +H   V+   D N+ V  A+I  Y+K   +  A  VFD    R+ 
Sbjct: 274 -----ELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKAWDIFN 299
           + W A+I   A +G +  AV LF  M    ++PD  T  +V+ A A  S  +   W   +
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARW--IH 386

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             S +  +   V     ++ + ++  R++ A    +    +     W A+++G    G  
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER-HVITWNAMIHGYGSHG-- 443

Query: 360 ELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             GK   + LFE      I P  T  ++ + +  S AG  DE       MKE
Sbjct: 444 -FGKAAVE-LFEEMKSIGIVPNET-TFLSVLSACSHAGLVDEGREYFTSMKE 492



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 6/247 (2%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M ++G  P   T +S+  L +   +L  G+ +H        D     ATA+ + YAK   
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLS 283
              A+RVFDR   R  + W A+++ YA +G A  A+ +   M    G +PD +T  +VL 
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           ACA++  +    +  +A + + G++  V     ++    +   I  A      MP K S 
Sbjct: 170 ACANARALAACREA-HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSV 228

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS--QAGRWDEADRVRE 401
             W A++ G + +GD      + + + E E  +  +  ++A L +  + G  DE  RV E
Sbjct: 229 S-WNAMIDGYAQNGDSREALALFNRMVE-EGVDVTDVSVLAALQACGELGCLDEGMRVHE 286

Query: 402 QMKESGL 408
            +   GL
Sbjct: 287 LLVRIGL 293



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A + A AA  D   A++ F  M + G  P   TFT++L  CA  G +     +   ++ +
Sbjct: 29  ARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR 88

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            GI         +  + ++ RR ++A     +MPV+     W AL+ G + +G
Sbjct: 89  -GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRV-AWNALVAGYARNG 139


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 260/470 (55%), Gaps = 6/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD +SW S++   +Q        ++F  M     L+PD      +++AC     +  
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH   I S +  D  + ++L+ MYAKCG  D  R + D +S K+ +S++A+ISGY  
Sbjct: 124 GKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISS 179
            G    A+ LFQ M    L +W A+ISGLVQ+        L  EM++ G+   +   +SS
Sbjct: 184 SGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSS 243

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I    ++ + L  GK+IH   +   Y+ +++V+ A++D YAK   +  A+++F R   R 
Sbjct: 244 IIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRD 303

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ WT+II   A HG A +A+SL+N ML+ G++P+ VTF  ++ AC+H GLV K    FN
Sbjct: 304 IVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFN 363

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   YGI PS++HY C++ +LSR+  + EA   +  MP KP    W ALL   +   + 
Sbjct: 364 SMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNT 423

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            +G  V DHL  ++PE+   YI+++N+Y+ A  W+   +VR  M    + K PG S I  
Sbjct: 424 LIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVL 483

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               Q F+A +TS    E+I+ +LE L   M++ GY+     +L ++E++
Sbjct: 484 GKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQ 533



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 34/245 (13%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           +V  LQAC +      G ++H  +I++ I     + N LI MY KCG +  A  L +++ 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +D +S+++I++           + +F  M                              
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAM------------------------------ 95

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
            +  G++P+    + +    +    +K GK++H   + +    +  V ++++D YAK G 
Sbjct: 96  FKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGL 155

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
               + VFD    ++ I WTA+IS YA  G    A+ LF +M    +    +++TA++S 
Sbjct: 156 PDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALISG 211

Query: 285 CAHSG 289
              SG
Sbjct: 212 LVQSG 216


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 252/452 (55%), Gaps = 32/452 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+    +MI+GY   G   E   LFR ++   ++ P+ +T+ SVL AC   + +  G E+
Sbjct: 444 DVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMV-PNCLTMASVLPACAALASLKLGKEL 502

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++  ++    + +++  MYAK G LD A      M  KD V               
Sbjct: 503 HCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSV--------------- 547

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN +I    QN + E  +DL R+M  SG + ++V++S+  S  
Sbjct: 548 ----------------CWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSAC 591

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +++  L  GKE+H + V+N +  + +VA+ +ID Y+K G L  A+ VFD    ++ + W 
Sbjct: 592 ANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWN 651

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II+AY  HG   + + LF+EM+  GIQPD VTF  ++SAC H+GLVD+    F  M+ +
Sbjct: 652 SIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEE 711

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI   +EH+ACMV +  RA R+ EA + +  MP  P A  WG+LL    + G+VEL K 
Sbjct: 712 YGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKL 771

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              HL E++P N+G Y++++N+++ AG W+   +VR  MKE G+ KIPG SWI+ +GG  
Sbjct: 772 ASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTH 831

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            F A D    +S +IYLIL+ LL  +R+ GYV
Sbjct: 832 MFSAADGCHPQSVEIYLILKNLLLELRKHGYV 863



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 180/359 (50%), Gaps = 34/359 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD + WN M+ GY + G +      F+EM NS V +P+ V+ V +L  C     +  G++
Sbjct: 241 RDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCV-KPNSVSFVCLLSVCATRGIVRAGIQ 299

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI S  + D  + N +I MY+KCG+L  AR + D M   D V+++ +I+GY+ +GF
Sbjct: 300 LHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGF 359

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            ++A+ LF                               + M  SGV+ +++T +S    
Sbjct: 360 TDEAVALF-------------------------------KAMVTSGVKLDSITFASFLPS 388

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +LK  KE+H Y V++    ++Y+ +A++D Y K G +  A + F +     + + 
Sbjct: 389 VLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVC 448

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+IS Y  +G   +A++LF  ++  G+ P+ +T  +VL ACA    +    ++   +  
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILK 508

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           + G++   +  + +  + +++ R+  A +F  +MPVK S   W  ++   S +G  EL 
Sbjct: 509 K-GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSV-CWNLMIVSFSQNGKPELA 565



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 152/287 (52%), Gaps = 32/287 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D V+WN +IAGY Q GF +E  ALF+ M+ S V + D +T  S L +  +S  + +
Sbjct: 339 MPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGV-KLDSITFASFLPSVLKSGSLKY 397

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH++++   +  D+++ +AL+ +Y K G ++ A     + +  D    +A+ISGY++
Sbjct: 398 CKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVL 457

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++LF+         W                  L++E    G+ PN +T++S+
Sbjct: 458 NGLNVEALNLFR---------W------------------LIQE----GMVPNCLTMASV 486

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++LK GKE+H   +K   +    V ++I   YAK+G L  A + F R   +  
Sbjct: 487 LPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDS 546

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           + W  +I +++ +G    A+ LF +M  +G + D V+ +A LSACA+
Sbjct: 547 VCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACAN 593



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 32/283 (11%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + WN +I G+S  G ++     F  ML S V  PD  T   V++ACG  +++     VH 
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNV-APDKYTFPYVIKACGGLNNVPLCKMVHE 201

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
                   MDL+I ++LI +Y   G +  A+ L DE+  +D +                 
Sbjct: 202 LARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCI----------------- 244

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                          WN +++G V+N    + L   +EM+ S V+PN+V+   + S+ + 
Sbjct: 245 --------------LWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCAT 290

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              ++ G ++HG  +++ ++ +  VA  II  Y+K G L  A+++FD       + W  +
Sbjct: 291 RGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGL 350

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           I+ Y  +G   +AV+LF  M+ +G++ D +TF + L +   SG
Sbjct: 351 IAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 116/270 (42%), Gaps = 52/270 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V WN MI  +SQ G  E    LFR+M  S   + D V++ + L AC     + +
Sbjct: 541 MPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGT-KFDSVSLSATLSACANYPALYY 599

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H FV+ +    D ++ + LI MY+KCG L  AR++ D M  K+EVS+++II+ Y  
Sbjct: 600 GKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGN 659

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG                               R    LDL  EM  +G++P+ VT   I
Sbjct: 660 HG-------------------------------RPRECLDLFHEMVEAGIQPDHVTFLVI 688

Query: 181 FSLFSHFSNLKGG-------KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            S   H   +  G        E +G   +  +         ++D Y + G LH A   FD
Sbjct: 689 MSACGHAGLVDEGIYYFRCMTEEYGICARMEH------FACMVDLYGRAGRLHEA---FD 739

Query: 234 RFKGRSLI----IWTAIISAYAAHGDASKA 259
             K          W +++ A   HG+   A
Sbjct: 740 TIKSMPFTPDAGTWGSLLGACRLHGNVELA 769



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 4/217 (1%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN +I G       +  L     M  S V P+  T   +       +N+   K +H  A 
Sbjct: 145 WNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELAR 204

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
              +  ++++ +++I  Y   G++H A+ +FD    R  I+W  +++ Y  +GD + A+ 
Sbjct: 205 SMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALG 264

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMSGQYGIQPSVEHYACMVGV 320
            F EM N+ ++P+ V+F  +LS CA  G+V     +    +   +   P+V +   ++ +
Sbjct: 265 TFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN--TIITM 322

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            S+   + +A +    MP +     W  L+ G   +G
Sbjct: 323 YSKCGNLFDARKIFDIMP-QTDTVTWNGLIAGYVQNG 358


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 258/453 (56%), Gaps = 33/453 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R IVSW S+I+GY+Q G   E   +F EM  + V RPD + +VSVL+A     D+  G  
Sbjct: 237 RTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNV-RPDWIALVSVLRAYTDVEDLEHGKS 295

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI+  ++ +  +  +L  +YAKCG +  AR   +++ +                  
Sbjct: 296 IHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVEN------------------ 337

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                        P L  WNA+ISG V+N   E  ++L R M++  +RP+++T++S  + 
Sbjct: 338 -------------PSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAA 384

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   +L+  + +  Y   + +  ++ V T++IDTYAK G +  A+ VFDR   + +++W
Sbjct: 385 CAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVW 444

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +A++  Y  HG   +++ LF+ M   G+ P+ VTF  +L+AC +SGLV++ WD+F+ M  
Sbjct: 445 SAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR- 503

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            YGI+P  +HYAC+V +L RA  +  A  FV  MP++P   VWGALL    I   V LG+
Sbjct: 504 DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGE 563

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  + LF ++P NTG+Y+ ++NLY+ +  WD   +VR  M+E GL K  G S IE +G L
Sbjct: 564 YAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKL 623

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           Q+F A D +  +S++I+  +E L   ++E G+V
Sbjct: 624 QAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFV 656



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 38/355 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  WN+++  YS+ GF+     ++  M     + PDG +   VL+AC     +  G  V
Sbjct: 137 DVFLWNAIVRCYSRHGFFGHAIEMYARM-QVACVSPDGFSFPCVLKACSALPALEMGRRV 195

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +     + D+++ N L+ +YAKCG +  A A+   + D+  VS+++IISGY      
Sbjct: 196 HGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGY------ 249

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                     QN +    L +  EM+ + VRP+ + + S+   +
Sbjct: 250 -------------------------AQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAY 284

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L+ GK IHG  +K   +    +  ++   YAK G +  A+  F++ +  SLI W 
Sbjct: 285 TDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWN 344

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-W-DIFNAMS 302
           A+IS Y  +G A +A+ LF  M +  I+PD +T T+ ++ACA  G ++ A W D + +MS
Sbjct: 345 AMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMS 404

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                +  V     ++   ++   +  A     ++P K    VW A++ G  + G
Sbjct: 405 ---EFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-DVVVWSAMMVGYGLHG 455



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 33/278 (11%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           L+   +  G +  AR L D+  D D   ++AI+  Y  HGF   A++++           
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYA---------- 162

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
                                 MQ + V P+  +   +    S    L+ G+ +HG   +
Sbjct: 163 ---------------------RMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFR 201

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           + ++ +++V   ++  YAK G +  A  VF R   R+++ WT+IIS YA +G   +A+ +
Sbjct: 202 HGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRI 261

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
           F+EM    ++PD +   +VL A      ++    I   +  + G++   +    +  + +
Sbjct: 262 FSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVI-KMGLECEFDLLISLTSLYA 320

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +   +  A  F +++   PS   W A++ G   +G  E
Sbjct: 321 KCGHVMVARLFFNQVE-NPSLIFWNAMISGYVKNGYAE 357



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 41/77 (53%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++   +++  +  G +  A+++FD+F    + +W AI+  Y+ HG    A+ ++  M   
Sbjct: 108 FLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVA 167

Query: 270 GIQPDPVTFTAVLSACA 286
            + PD  +F  VL AC+
Sbjct: 168 CVSPDGFSFPCVLKACS 184


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 253/455 (55%), Gaps = 33/455 (7%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M ++++VSW +MI  Y + G +++   L +EM+   + RPD   V S L A      +  
Sbjct: 579  MGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGI-RPDVFAVTSALHAFAGDESLKQ 637

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G  VH + I + ++  L + NAL+ MY KC +++ AR + D +++KD +S          
Sbjct: 638  GKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVIS---------- 687

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 WN +I G  +NN       L  +M     RPNAVT++ I
Sbjct: 688  ---------------------WNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCI 725

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                +  S+L+ G+EIH YA++  +  + Y + A++D Y K G L  A+ +FDR   ++L
Sbjct: 726  LPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNL 785

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            I WT +I+ Y  HG    A++LF +M  +GI+PD  +F+A+L AC HSGL  +    F A
Sbjct: 786  ISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKA 845

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            M  +Y I+P ++HY C+V +LSR   + EA EF+  MP++P + +W +LL+G  I  +V+
Sbjct: 846  MQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVK 905

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            L + V D +F++EPENTG Y+++AN+Y++A RW+   +++ ++   GL +  G SWIE  
Sbjct: 906  LAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVR 965

Query: 421  GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
              +  F+A + +     +I   L+ +   MR+EG+
Sbjct: 966  SKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGH 1000



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 191/440 (43%), Gaps = 72/440 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D +SWNS+I+G S  G   E   LF  M        D VT++SVL AC QS     
Sbjct: 478 MPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQG-QELDSVTLLSVLPACAQSRYWFA 536

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH + +++ +  +  + NAL+ MY+ C        +   M  K+ VS          
Sbjct: 537 GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVS---------- 586

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A+I+  ++    + V  L++EM   G+RP+   ++S 
Sbjct: 587 ---------------------WTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSA 625

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F+   +LK GK +HGY ++N  ++ + VA A+++ Y K   +  A+ +FDR   + +
Sbjct: 626 LHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDV 685

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-- 298
           I W  +I  Y+ +   +++ SLF++ML    +P+ VT T +L A A    +++  +I   
Sbjct: 686 ISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAY 744

Query: 299 ----NAMSGQYGIQPSVEHYACMVGVLSRAR----RISE--------------------- 329
                 +   Y     V+ Y    G L  AR    R+++                     
Sbjct: 745 ALRRGFLEDSYASNALVDMYV-KCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKH 803

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
           A     +M    ++P A  + A+LY    SG    G+     +   ++IEP+   +Y  +
Sbjct: 804 AIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPK-LKHYTCI 862

Query: 384 ANLYSQAGRWDEADRVREQM 403
            +L S+ G   EA    E M
Sbjct: 863 VDLLSRTGDLKEALEFIESM 882



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 133/302 (44%), Gaps = 49/302 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD +SWNSMI G    G++     LF +M +        VTV+SVL AC      + 
Sbjct: 265 MHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT-EISSVTVLSVLPACAGLGYGLI 323

Query: 61  GMEVHNFVIESHIKMDLW-------------ICNALIGMYAKCGSLDYARALLDEMSDKD 107
           G  VH + ++S +   LW             + + L+ MY KCG +  AR + D MS K 
Sbjct: 324 GKAVHGYSVKSGL---LWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG 380

Query: 108 EVS-YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
            V  ++ I+ GY   G  E+++ LF                                +M 
Sbjct: 381 NVHVWNLIMGGYAKVGEFEESLSLFV-------------------------------QMH 409

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G+ P+   IS +    +  S  + G   HGY VK  +     V  A+I  YAK+  + 
Sbjct: 410 ELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIG 469

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A  VF+R   +  I W ++IS  +++G  S+A+ LF  M   G + D VT  +VL ACA
Sbjct: 470 DAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACA 529

Query: 287 HS 288
            S
Sbjct: 530 QS 531



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 163/369 (44%), Gaps = 55/369 (14%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  W S+++ Y++ G ++E  +LFR+M    V  PD   V  VL+       +  G  +
Sbjct: 168 DVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGV-SPDAHAVSCVLKCVSSLGSLTEGEVI 226

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  + +  +     + NALI +Y++CG ++ A  + D M  +D +S++++I G   +G+ 
Sbjct: 227 HGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWH 286

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A+DLF                                +M + G   ++VT+ S+    
Sbjct: 287 GTAVDLFS-------------------------------KMWSQGTEISSVTVLSVLPAC 315

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID----------TYAKTGFLHGAQRVFDR 234
           +       GK +HGY+VK+     +    + ID           Y K G +  A+RVFD 
Sbjct: 316 AGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDA 375

Query: 235 FKGRSLI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS-----ACAHS 288
              +  + +W  I+  YA  G+  +++SLF +M   GI PD    + +L      +CA  
Sbjct: 376 MSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARD 435

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           GLV   + +      Q  +  +      ++   +++  I +A    ++MP + +   W +
Sbjct: 436 GLVAHGYIVKLGFGAQCAVCNA------LISFYAKSNMIGDAVLVFNRMPRQDTIS-WNS 488

Query: 349 LLYGASISG 357
           ++ G S +G
Sbjct: 489 VISGCSSNG 497



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 125/285 (43%), Gaps = 32/285 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           SK ++  WN ++ GY++ G +EE  +LF +M +   + PD   +  +L+     S    G
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFEESLSLFVQM-HELGIAPDEHAISCLLKCITCLSCARDG 436

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           +  H ++++        +CNALI  YAK                                
Sbjct: 437 LVAHGYIVKLGFGAQCAVCNALISFYAK-------------------------------S 465

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
             +  A+ +F  M R    +WN+VISG   N  +   ++L   M   G   ++VT+ S+ 
Sbjct: 466 NMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVL 525

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +       G+ +HGY+VK        +A A++D Y+         ++F     ++++
Sbjct: 526 PACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVV 585

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            WTA+I++Y   G   K   L  EM+ +GI+PD    T+ L A A
Sbjct: 586 SWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFA 630



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 145/351 (41%), Gaps = 60/351 (17%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMD----LWICNALIGMYAKCGSLDYARALLDEM 103
           V+Q CG+   +      H  +  S           +   L+  Y KCG L  AR + D M
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGM 162

Query: 104 SDK--DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
             +  D   +++++S Y   G  ++A+ LF                              
Sbjct: 163 PPQAADVRVWTSLMSAYAKAGDFQEAVSLF------------------------------ 192

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
            R+MQ  GV P+A  +S +    S   +L  G+ IHG   K    +   VA A+I  Y++
Sbjct: 193 -RQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSR 251

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G +  A RVFD    R  I W ++I    ++G    AV LF++M + G +   VT  +V
Sbjct: 252 CGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSV 311

Query: 282 LSACA--HSGLVDKAWDIFNAMSGQY----GIQPSVEHYA---------CMVGVLSRARR 326
           L ACA    GL+ KA   ++  SG       +Q  ++  A            G ++ ARR
Sbjct: 312 LPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARR 371

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKFVCDHLFEIEPE 375
           + +A      M  K +  VW  ++ G +  G+ E  L  FV  H   I P+
Sbjct: 372 VFDA------MSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPD 416


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 249/446 (55%), Gaps = 2/446 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R++VSWNSMI GY+Q G   E  ALF EM     L  D  T+ S+L AC Q  ++ F
Sbjct: 106 MAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFL-GDEFTLASLLLACSQEGNLEF 164

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ S   +DL +  AL+ MY+KCG L  AR   + M  K  VS+++++     
Sbjct: 165 GRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTK 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V+ A   F  M      +WN +IS  VQ  ++   LDL ++MQ+ G  P+  T+  +
Sbjct: 225 HGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPV 284

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  GK +H Y   N ++ +I +  +++D YAK G +  A R+F     R++
Sbjct: 285 LSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNV 344

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II   A HG A  A++ F  M+ N   PD +TF A+LS+C+H GL++     F +
Sbjct: 345 VSWNVIIGGLAMHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFES 403

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++  VEHYACMV +L R   + +A   + +MP+KP   VWGALL    I G+V+
Sbjct: 404 MRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVK 463

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK V   L E+E  + G +++++NL  +  +W++  R+R+ MKE G  K  G S IE +
Sbjct: 464 IGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEIN 523

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
             +  F  +D   + S +IY ++++L
Sbjct: 524 NSIHEFGVEDIRHESSSEIYAVVDQL 549



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 181/436 (41%), Gaps = 55/436 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D V +N++   Y       E   L R ML   VL P+  T+  V++AC ++      + V
Sbjct: 9   DRVMYNTITRAYCNSDCPREALRLHRCMLRRGVL-PNEFTLPFVVKACTRAQAWDNALAV 67

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   ++      +++ NAL+  YA  GSL  +R   DEM+ ++ VS++++I GY   G  
Sbjct: 68  HGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDT 127

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSI 180
            +A  LF  M+R G       ++ L+     E  L+  R     M  SG   + +   ++
Sbjct: 128 REACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGAL 187

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             ++S   +L   +       +    +++   T+++    K G +  A+  FD    R+ 
Sbjct: 188 VDMYSKCGDLCMARR----CFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNT 243

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           + W  +IS Y   G   +A+ L+ +M ++G  PD  T   VLSAC               
Sbjct: 244 VSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLY 303

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                               A  G VD A  +F  M  +     +V  +  ++G L+   
Sbjct: 304 IRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNR-----NVVSWNVIIGGLAMHG 358

Query: 326 RISEATEFVSKM--PVKPSAKVWGALLYGASISGDVELGKFVCD---HLFEIEPENTGNY 380
           R  +A  F   M     P    + ALL   S  G +E G+   +   H++ ++ E   +Y
Sbjct: 359 RALDAITFFRSMVRNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHE-VEHY 417

Query: 381 IIMANLYSQAGRWDEA 396
             M +L  + G  ++A
Sbjct: 418 ACMVDLLGRRGHLEKA 433



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 127/280 (45%), Gaps = 5/280 (1%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +F  +  P    +N +      ++     L L R M   GV PN  T+  +    +    
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
                 +HG A+K  +   ++VA A++ +YA  G L  ++R FD   GR+++ W ++I  
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           YA  GD  +A +LF EM   G   D  T  ++L AC+  G ++    + + +    G   
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFG-RLVHCLMLVSGSPV 179

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL 369
            +     +V + S+   +  A      MP+K S   W ++L   +  G V+  +   DH+
Sbjct: 180 DLILGGALVDMYSKCGDLCMARRCFEMMPIK-SVVSWTSMLCAQTKHGSVDAARCWFDHM 238

Query: 370 FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
            E    NT ++  M + Y Q G++ EA  + +QM+  G A
Sbjct: 239 PE---RNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA 275


>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
          Length = 569

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 263/462 (56%), Gaps = 12/462 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF-- 60
           + D V+W ++++ +++ G + +   LF EM  S     +  ++   L AC  + D+    
Sbjct: 107 RPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGC-EGNAESMAVALSACPYAGDLALAK 165

Query: 61  GMEVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H   V++  +   L++ N+LI MY K G +D A+    + + K+ V+++ +I+ Y 
Sbjct: 166 GKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYA 225

Query: 120 VHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
                +KA+D+   M++      P + +W+AVI G   +   +  L+L R MQ   + PN
Sbjct: 226 AARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPN 285

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            VT++++ S       L+ G+E+HG+A+K   DR+  V   +I+ YAK G + GA++VFD
Sbjct: 286 VVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFD 345

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             K R LI W ++++ Y  HG   +A++LF +M    ++PD VTF AVLSAC H+G V +
Sbjct: 346 GMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTE 405

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
              +F+ M   + I PS+EHY CMV +L RA  + +A+E V  MPV+P   VWGALL   
Sbjct: 406 GRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSC 465

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I GD  + +    ++ + E ++TGN++++ NLY+  G WDE+ +VR   KE+GL K PG
Sbjct: 466 RIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPG 525

Query: 414 RSWIECSGGLQSFVAKDTSGD--KSEQIYLILERLLGLMREE 453
           +SWIE    + +F A     +   +E ++ +L+ L   M +E
Sbjct: 526 QSWIEVDNKVVAFAAGSAPPNLTGAEDVFGMLDDLYAEMEDE 567



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 7/126 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWNSM+AGY   G  +E  ALF +M  + V  PDGVT V+VL ACG +  +  
Sbjct: 347 MKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATV-EPDGVTFVAVLSACGHAGRVTE 405

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G  + + ++ +H     M+ + C  ++ +  + G L  A  L++ M  + ++  + A+++
Sbjct: 406 GRRLFDRMVRAHKISPSMEHYTC--MVYLLGRAGLLRDASELVETMPVRPDLCVWGALLN 463

Query: 117 GYMVHG 122
              +HG
Sbjct: 464 SCRIHG 469



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 44/240 (18%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST--WNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           I++ Y   G    A  +F  M  PG +T  WNA+IS        +A  D    M A+G R
Sbjct: 49  ILAAYSRLGRAADARRVFDAMP-PGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGAR 107

Query: 172 PNAVTISSIFS-------------LFSHFSN------------------------LKGGK 194
           P+AVT +++ S             LF                             L  GK
Sbjct: 108 PDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGK 167

Query: 195 EIHGYA-VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
            IHG   VK      ++V  ++I  Y K G +  A++ F     ++ + W  +I++YAA 
Sbjct: 168 AIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAA 227

Query: 254 GDASKAVSLFNEM--LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
               KA+ +  +M  +   + P+ V+++AV+   A SG  D+A ++F  M  Q+ + P+V
Sbjct: 228 RLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQW-LSPNV 286



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHG 254
           +H +A+         VA  I+  Y++ G    A+RVFD    GR+   W A+ISAY++  
Sbjct: 30  VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           D   A   F  M   G +PD VT+TA+LSA A SG       +F  M
Sbjct: 90  DPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEM 136


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 251/446 (56%), Gaps = 8/446 (1%)

Query: 9   WNSMIAGYSQGGFYEEC----KALFREMLNSP----VLRPDGVTVVSVLQACGQSSDIVF 60
           +N+MI   +    Y       K + RE  NS     ++ PD  T   V++AC +      
Sbjct: 54  YNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNL 113

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH    +   K  L   NALI MY KC +L  A  L DEM ++  +S++ IISG++ 
Sbjct: 114 GKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVR 173

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A  LF  M    + +W A+ISG  +   +   LD+ REMQ +G+ P+  +I S+
Sbjct: 174 LGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISV 233

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L+ GK IH +  +N   R   +  A+I+ Y K G +  A ++FD+ +GR +
Sbjct: 234 LPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDV 293

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+ +I   A HG   +A+++F  M    I+P+ +TF  +LSACAH+G  ++    F+ 
Sbjct: 294 ISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDT 353

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I+P +EHY  +V +L RA R+S+A + V KMP+KP +K+WG+LL       ++E
Sbjct: 354 MKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIE 413

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +     +HL E+EP++TGNY++++N+Y+  G+WD+  R+R+ ++   + K PG S IE +
Sbjct: 414 VAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVN 473

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
              Q FV+ D S   S++I+ +LE L
Sbjct: 474 NVAQEFVSGDDSKPYSKEIFWLLELL 499



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 166/378 (43%), Gaps = 50/378 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSW ++I+GY++ G Y +   +FREM  + +  PD  +++SVL AC +   +  
Sbjct: 187 MPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGI-EPDEASIISVLPACAKLGALET 245

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F   + +     ICNALI MY KCG +D A  L D+M  +D +S+S +I G   
Sbjct: 246 GKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLAN 305

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V +A+ +F+ MK+                               + ++PN +T   +
Sbjct: 306 HGKVREAIAIFERMKQ-------------------------------TNIKPNGITFVGL 334

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            S  +H    + G        K+ + +  I    +++D   + G L  A  + ++   + 
Sbjct: 335 LSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKP 394

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
              IW +++S+   H +   AV     +    ++PD  T   VL +  ++ L    WD  
Sbjct: 395 DSKIWGSLLSSCRTHCNIEVAVIAMEHL--EELEPDD-TGNYVLLSNIYADL--GKWDDV 449

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M      +   +   C +  ++       A EFVS    KP +K    LL   +   D
Sbjct: 450 SRMRKLVRSKRMKKTPGCSLIEVNNV-----AQEFVSGDDSKPYSKEIFWLLELLAFHQD 504

Query: 359 VELGKFVCDHLFEIEPEN 376
           ++       H+ EI PEN
Sbjct: 505 MD------KHILEIIPEN 516



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 163/409 (39%), Gaps = 64/409 (15%)

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+  +    ++   +I +  +   +DYA  L  E+ D +   Y+A+I     +   
Sbjct: 8   HALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMY 67

Query: 125 EKAMDLFQVMKR-------------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
              +D ++ M R             P   T+  V+    +   H     +  +    G +
Sbjct: 68  SLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKK 127

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
            + +T +++  +++   NL     +        ++R       II  + + G +  A+ +
Sbjct: 128 SHLITENALIDMYTKCDNLLDAHNL----FDEMHERGAISWNGIISGHVRLGQMRRARAL 183

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----- 286
           FD    R+++ WTAIIS Y   G    A+ +F EM   GI+PD  +  +VL ACA     
Sbjct: 184 FDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGAL 243

Query: 287 ------------------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
                                           G +D+A  +F+ M G+      V  ++ 
Sbjct: 244 ETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGR-----DVISWST 298

Query: 317 MVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---F 370
           M+G L+   ++ EA     +M    +KP+   +  LL   + +G  E G    D +   F
Sbjct: 299 MIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDF 358

Query: 371 EIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            IEPE   +Y  + +L  +AGR  +A  + E+M     +KI G     C
Sbjct: 359 HIEPE-IEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSC 406


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 268/500 (53%), Gaps = 67/500 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA-------------------------------LF 29
           M +RD+ SWN +I+GY++ G  +E K+                               LF
Sbjct: 131 MPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELF 190

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           R M  S   + +  TV S L A      +  G E+H +++ + +  D  + +AL  MY K
Sbjct: 191 RMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 250

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CGS++ AR + D+M D+D V+++A+I  Y   G  ++  DLF                  
Sbjct: 251 CGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFA----------------- 293

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
                     DL+R    SG+RPN  T S + +  ++ ++ + GK++HGY  +  +D   
Sbjct: 294 ----------DLLR----SGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFS 339

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           + A+A++  Y+K G +  A+RVF       L  WT++I+ YA +G   +A+  F  ++ +
Sbjct: 340 FAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKS 399

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           G QPD +TF  VLSACAH+GLVDK  D F+++  QYG+  + +HYAC++ +L+R+ +  E
Sbjct: 400 GTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDE 459

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A   +SKM +KP   +W +LL G  I G+++L +   + LFEIEPEN   Y+ +AN+Y+ 
Sbjct: 460 AENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYAT 519

Query: 390 AGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGL 449
           AG W E  ++R+ M + G+ K PG SWI     +  F+  D S  KS++I   L +L   
Sbjct: 520 AGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKR 579

Query: 450 MREEGYV-----LLDEVEEE 464
           M+EEG+V     +L +VE+E
Sbjct: 580 MKEEGFVPDTNFVLHDVEDE 599



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 3/320 (0%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           +P      +++Q+C +S  +  G +VH  +  S     L+I N L+ MYAKC SL  ++ 
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158
           L DEM ++D  S++ +ISGY   G +++A  LF  M      +W A+ISG V+++R    
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 159 LDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           L+L R M+ S   + N  T+SS  +  +    L+ GKEIHGY ++   D +  V +A+ D
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y K G +  A+ +FD+   R ++ WTA+I  Y   G   +   LF ++L +GI+P+  T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           F+ VL+ACA+    +    +   M+ + G  P     + +V + S+   +  A     + 
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMT-RVGFDPFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 338 PVKPSAKVWGALLYGASISG 357
           P +P    W +L+ G + +G
Sbjct: 366 P-QPDLFSWTSLIAGYAQNG 384


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 263/456 (57%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++++++S+N+MI GYS      E   LF EM    +  P  +T VS+L        +  
Sbjct: 300 MAEQNVISYNAMIEGYSSQEKLSEALELFHEM-RVRLFPPSLLTFVSLLGVSASLFALEL 358

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H  +I+  + +DL+  +ALI +Y+KC                              
Sbjct: 359 SKQIHGLIIKXGVSLDLFAGSALIDVYSKCS----------------------------- 389

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             +V+ A  +F+ M    +  WNA+  G  Q+  +E  L L   +Q S  +PN  T +++
Sbjct: 390 --YVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAAL 447

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S+ ++L+ G++ H   VK   D   +V  A++D YAK G +  A+++F+    R +
Sbjct: 448 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 507

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++IS +A HG+A +A+ +F EM+  GIQP+ VTF AVLSAC+H+G V+   + FN+
Sbjct: 508 VCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNS 567

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M G +GI+P  EHYAC+V +L R+ ++ EA EF+ KMP++P+A VW +LL    I+G+VE
Sbjct: 568 MPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 626

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK+  +     +P+++G+YI+++N+++  G W +  +VR++M  S + K PGRSWIE +
Sbjct: 627 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 686

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F+A+ T+  +++ I  +L+ L+  ++  GYV
Sbjct: 687 NKVNVFIARXTTHREADMIGSVLDILIQHIKGAGYV 722



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 34/350 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++  V+W ++IAGY++ G       LF +M  + V+ PD   V SVL AC     +  G 
Sbjct: 100 EKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVV-PDRYVVSSVLSACSMLEFLEGGK 158

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H +V+    +MD+ + N LI  Y KC  +   R L D+M  K+ +S            
Sbjct: 159 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIIS------------ 206

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W  +ISG +QN+     + L  EM   G +P+    +S+ +
Sbjct: 207 -------------------WTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 247

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                  L+ G+++H Y +K   + N +V   +ID YAK+  L  A++VFD    +++I 
Sbjct: 248 SCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVIS 307

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           + A+I  Y++    S+A+ LF+EM      P  +TF ++L   A    ++ +  I + + 
Sbjct: 308 YNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI-HGLI 366

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            + G+   +   + ++ V S+   + +A     +M  K    VW A+ +G
Sbjct: 367 IKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIV-VWNAMFFG 415



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 164/369 (44%), Gaps = 74/369 (20%)

Query: 20  GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79
           G+ EE   +F ++       P+   + SV++AC Q   +  G ++H FV+ S    D+++
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
             +LI  Y+K G ++ AR + D++ +K  V+++ II+GY   G                 
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCG----------------- 117

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
                         R    L+L  +M+ + V P+   +SS+ S  S    L+GGK+IH Y
Sbjct: 118 --------------RSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAY 163

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            ++   + ++ V   +ID Y K   +   +++FD+   +++I WT +IS Y  +    +A
Sbjct: 164 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEA 223

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSAC---------------------------------- 285
           + LF EM   G +PD    T+VL++C                                  
Sbjct: 224 MKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDM 283

Query: 286 -AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---P 341
            A S L+  A  +F+ M+ Q     +V  Y  M+   S   ++SEA E   +M V+   P
Sbjct: 284 YAKSNLLXDAKKVFDVMAEQ-----NVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPP 338

Query: 342 SAKVWGALL 350
           S   + +LL
Sbjct: 339 SLLTFVSLL 347


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 245/455 (53%), Gaps = 32/455 (7%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            +  R+++SW +MI G++  G   +   LF +M N    +P   T  S+L+AC  S+ +  
Sbjct: 648  LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDG-FKPVKSTFSSILKACMSSACLDE 706

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G +V   ++ S  ++D  + NALI  Y+K GS+  AR                       
Sbjct: 707  GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDAR----------------------- 743

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                     +F  M    + +WN +I+G  QN      L    +MQ  GV  N  +  SI
Sbjct: 744  --------KVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSI 795

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +  S FS L+ GK +H   VK +   ++ V  A+I  YAK G L  AQ VFD F  +++
Sbjct: 796  LNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNV 855

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            + W A+I+AYA HG ASKA+  FN M   GI+PD  TFT++LSAC HSGLV +   IF++
Sbjct: 856  VTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSS 915

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            +  Q+G+ P++EHY C+VG+L RA R  EA   +++MP  P A VW  LL    I G+V 
Sbjct: 916  LESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVA 975

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            L +   ++  ++   N   Y++++N+Y+ AGRWD+  ++R  M+  G+ K PGRSWIE  
Sbjct: 976  LAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 1035

Query: 421  GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
              +  F+A D S  ++ +IY  L+RL   M   GY
Sbjct: 1036 NIIHEFIAADRSHPETAEIYEELKRLSLEMERAGY 1070



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 200/441 (45%), Gaps = 79/441 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RDI+SWNSMIAG++Q G YE    LF EM     L PD +T  SVL  C     +  G +
Sbjct: 550 RDIISWNSMIAGHAQHGSYEAAYKLFLEM-KKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +IES +++D+ + NALI MY +CGSL  A  +   +  ++ +S++A+I G+   G 
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             KA +LF          W                     +MQ  G +P   T SSI   
Sbjct: 669 DRKAFELF----------W---------------------QMQNDGFKPVKSTFSSILKA 697

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
               + L  GK++  + + + Y+ +  V  A+I  Y+K+G +  A++VFD+   R ++ W
Sbjct: 698 CMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSW 757

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------------ 285
             +I+ YA +G    A+    +M   G+  +  +F ++L+AC                  
Sbjct: 758 NKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVK 817

Query: 286 -----------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                            A  G +++A ++F+  +     + +V  +  M+   ++    S
Sbjct: 818 RKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT-----EKNVVTWNAMINAYAQHGLAS 872

Query: 329 EATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYII 382
           +A +F + M    +KP    + ++L   + SG V  G  +   L     + P    +Y  
Sbjct: 873 KALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSP-TIEHYGC 931

Query: 383 MANLYSQAGRWDEADRVREQM 403
           +  L  +AGR+ EA+ +  QM
Sbjct: 932 LVGLLGRAGRFQEAETLINQM 952



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 219/445 (49%), Gaps = 48/445 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD++SWN++IAGY++     E   L+++M  S  ++P  VT + +L AC  SS    
Sbjct: 446 MPKRDLISWNAIIAGYARREDRGEAMKLYKQM-QSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  ++ S IK +  + NAL+ MY +CGS                            
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGS---------------------------- 536

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              + +A ++F+  +   + +WN++I+G  Q+  +EA   L  EM+  G+ P+ +T +S+
Sbjct: 537 ---IMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASV 593

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                +   L+ G++IH   +++    ++ +  A+I+ Y + G L  A  VF   + R++
Sbjct: 594 LVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNV 653

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-N 299
           + WTA+I  +A  G+  KA  LF +M N+G +P   TF+++L AC  S  +D+   +  +
Sbjct: 654 MSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAH 713

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            ++  Y +   V +   ++   S++  +++A +   KMP +     W  ++ G + +G  
Sbjct: 714 ILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAGYAQNG-- 768

Query: 360 ELGKFVCDHLFEIEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            LG       ++++ +    N  +++ + N  S     +E  RV  ++ +    K+ G  
Sbjct: 769 -LGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR---KMQGD- 823

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIY 440
            +     L S  AK  S +++++++
Sbjct: 824 -VRVGAALISMYAKCGSLEEAQEVF 847



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 178/352 (50%), Gaps = 34/352 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SWNS+I+ Y+Q GF ++   LF EM  +  + P  +T +S+L AC   +++ +
Sbjct: 143 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI-PSKITYISILTACCSPAELEY 201

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ +IE+  + D  + N+L+ MY KC  L  AR +   +  +D VSY+ ++  Y  
Sbjct: 202 GKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQ 261

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             +VE+ + LF                                +M + G+ P+ VT  ++
Sbjct: 262 KAYVEECIGLFG-------------------------------QMSSEGIPPDKVTYINL 290

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F+  S L  GK IH  AV    + +I V TA+   + + G + GA++  + F  R +
Sbjct: 291 LDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDV 350

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           +++ A+I+A A HG   +A   + +M ++G+  +  T+ +VL+AC+ S  +  A ++ ++
Sbjct: 351 VVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALG-AGELIHS 409

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              + G    V+    ++ + +R   +  A E  + MP K     W A++ G
Sbjct: 410 HISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 203/449 (45%), Gaps = 92/449 (20%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQSS 56
           + RD+V +N++IA  +Q G YEE    + +M      R DGV     T +SVL AC  S 
Sbjct: 346 ADRDVVVYNALIAALAQHGHYEEAFEQYYQM------RSDGVVMNRTTYLSVLNACSTSK 399

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +  G  +H+ + E     D+ I N+LI MYA+CG L  AR                   
Sbjct: 400 ALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAR------------------- 440

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                       +LF  M +  L +WNA+I+G  +       + L ++MQ+ GV+P  VT
Sbjct: 441 ------------ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
              + S  ++ S    GK IH   +++    N ++A A+++ Y + G +  AQ VF+  +
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH--------- 287
            R +I W ++I+ +A HG    A  LF EM   G++PD +TF +VL  C +         
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 288 -------SGL-------------------VDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
                  SGL                   +  A+++F+++  +     +V  +  M+G  
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-----NVMSWTAMIGGF 663

Query: 322 SRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL----FEIEP 374
           +      +A E   +M     KP    + ++L     S  ++ GK V  H+    +E++ 
Sbjct: 664 ADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDT 723

Query: 375 ENTGNYIIMANLYSQAGRWDEADRVREQM 403
              GN +I A  YS++G   +A +V ++M
Sbjct: 724 -GVGNALISA--YSKSGSMTDARKVFDKM 749



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 31/252 (12%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           V ++Q C +   +     +H  ++E+ +  D+++ N LI MY KC S+  A  +  +M  
Sbjct: 86  VDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPR 145

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +D +S++++IS Y   GF +KA  LF+                               EM
Sbjct: 146 RDVISWNSLISCYAQQGFKKKAFQLFE-------------------------------EM 174

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q +G  P+ +T  SI +     + L+ GK+IH   ++  Y R+  V  ++++ Y K   L
Sbjct: 175 QTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDL 234

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VF     R ++ +  ++  YA      + + LF +M + GI PD VT+  +L A 
Sbjct: 235 PSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAF 294

Query: 286 AHSGLVDKAWDI 297
               ++D+   I
Sbjct: 295 TTPSMLDEGKRI 306



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%)

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           DL    Q      N      +    +   +L   K IH   V+     +I+++  +I+ Y
Sbjct: 68  DLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMY 127

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K   +  A +VF +   R +I W ++IS YA  G   KA  LF EM   G  P  +T+ 
Sbjct: 128 VKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYI 187

Query: 280 AVLSAC 285
           ++L+AC
Sbjct: 188 SILTAC 193


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 267/477 (55%), Gaps = 31/477 (6%)

Query: 3    KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            +R +  WN+++AGY++  F ++   LF EM++     P+  T  SVL AC +        
Sbjct: 598  RRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKE 657

Query: 63   EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
             +H ++++     D ++ NAL+ MY++ G ++ ++ +   M+ +D VS++ +I+G +V G
Sbjct: 658  GIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCG 717

Query: 123  FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG---VRPNAVTISS 179
              + A++L   M+R                 + E   D   + +  G    +PN+VT+ +
Sbjct: 718  RYDDALNLLHEMQR----------------RQGEDGSDTFVDYEDDGGVPFKPNSVTLMT 761

Query: 180  IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +    +  + L  GKEIH YAVK +   ++ V +A++D YAK G L+ A RVFD+   R+
Sbjct: 762  VLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRN 821

Query: 240  LIIWTAIISAYAAHGDASKAVSLFNEMLNNG------IQPDPVTFTAVLSACAHSGLVDK 293
            +I W  +I AY  HG   +A+ LF  M   G      I+P+ VT+ A+ +AC+HSG+VD+
Sbjct: 822  VITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDE 881

Query: 294  AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYG 352
               +F+ M   +G++P  +HYAC+V +L R+ R+ EA E ++ MP        W +LL  
Sbjct: 882  GLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGA 941

Query: 353  ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
              I   VE G+    HLF +EP    +Y++M+N+YS AG WD+A  VR++MKE G+ K P
Sbjct: 942  CRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEP 1001

Query: 413  GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            G SWIE    +  F++ D S  +S++++  LE L   MR+EGYV     +L  V++E
Sbjct: 1002 GCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDE 1058



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 139/288 (48%), Gaps = 36/288 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIV 59
           +  RD VSWNSMIA   +   +E    LFR ML+  V  P   T+VSV  AC      + 
Sbjct: 393 IPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENV-DPTSFTLVSVAHACSHVRGGVR 451

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G +VH + + +   +  +  NAL+ MYA+ G ++ A+AL      KD VS         
Sbjct: 452 LGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVS--------- 501

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 WN VIS L QN+R E  L  V  M   GVRP+ VT++S
Sbjct: 502 ----------------------WNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLAS 539

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +    S    L+ G+EIH YA++N     N +V TA++D Y         + VFD    R
Sbjct: 540 VLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRR 599

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSAC 285
           ++ +W A+++ YA +    +A+ LF EM++     P+  TF +VL AC
Sbjct: 600 TVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC 647



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 183/430 (42%), Gaps = 61/430 (14%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN++I+  SQ   +EE       M+   V RPDGVT+ SVL AC Q   +  G E
Sbjct: 497 KDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGV-RPDGVTLASVLPACSQLERLRIGRE 555

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H + + +  +  + ++  AL+ MY  C      R + D                    G
Sbjct: 556 IHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFD--------------------G 595

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIF 181
            V +            ++ WNA+++G  +N   +  L L  EM   S   PNA T +S+ 
Sbjct: 596 VVRRT-----------VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVL 644

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                       + IHGY VK  + ++ YV  A++D Y++ G +  ++ +F R   R ++
Sbjct: 645 PACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIV 704

Query: 242 IWTAIISAYAAHGDASKAVSLFNEML----------------NNGI--QPDPVTFTAVLS 283
            W  +I+     G    A++L +EM                 + G+  +P+ VT   VL 
Sbjct: 705 SWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLP 764

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            CA    + K  +I +A + +  +   V   + +V + ++   ++ A+    +MP++ + 
Sbjct: 765 GCAALAALGKGKEI-HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NV 822

Query: 344 KVWGALL--YGASISGDVELGKFVC-----DHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
             W  L+  YG    G+  L  F           E+   N   YI +    S +G  DE 
Sbjct: 823 ITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEG 882

Query: 397 DRVREQMKES 406
             +   MK S
Sbjct: 883 LHLFHTMKAS 892



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 35/250 (14%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARA 98
           D     +VL+A     D+  G ++H  V +        + + N+L+ MY KCG L  AR 
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158
           + D++ D+D VS                               WN++I+ L +    E  
Sbjct: 389 VFDDIPDRDHVS-------------------------------WNSMIATLCRFEEWELS 417

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHF-SNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           L L R M +  V P + T+ S+    SH    ++ GK++H Y ++N  D   Y   A++ 
Sbjct: 418 LHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVT 476

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YA+ G ++ A+ +F  F G+ L+ W  +IS+ + +    +A+     M+ +G++PD VT
Sbjct: 477 MYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVT 536

Query: 278 FTAVLSACAH 287
             +VL AC+ 
Sbjct: 537 LASVLPACSQ 546



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 28/224 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-----------------VLRPDGV 43
           M+KRDIVSWN+MI G    G Y++   L  EM                       +P+ V
Sbjct: 698 MNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSV 757

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T+++VL  C   + +  G E+H + ++  + MD+ + +AL+ MYAKCG L+ A  + D+M
Sbjct: 758 TLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQM 817

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK----------RPGLSTWNAVISGLVQNN 153
             ++ ++++ +I  Y +HG  E+A++LF++M           RP   T+ A+ +    + 
Sbjct: 818 PIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSG 877

Query: 154 RHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEI 196
             +  L L   M+AS GV P     + +  L      +K   E+
Sbjct: 878 MVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYEL 921


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 252/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSWN+MI GY++ G   E  ALF+ M+   V   D V+V++ L ACG+   +  
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTD-VSVLAALHACGELGFLDE 446

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++   ++ ++ + NALI MY KC   D A  + DE+  K  VS          
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVS---------- 496

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN   E  + L   MQ   V+P++ T+ SI
Sbjct: 497 ---------------------WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSI 535

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+    + IHGY+++   D+++YV TA+ID YAK G +  A+ +F+  + R +
Sbjct: 536 IPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHV 595

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y +HG    AV LF EM ++G  P+  TF +VLSAC+H+GLVD+  + F++
Sbjct: 596 ITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSS 655

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P +EHY  MV +L RA ++ EA  F+ KMP++P   V+GA+L    +  +VE
Sbjct: 656 MKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVE 715

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     +FE+EPE    ++++AN+Y+ A  W +  RVR  M++ GL K PG S ++  
Sbjct: 716 LAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLK 775

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F +  T+  +++ IY  L +L+  ++  GYV
Sbjct: 776 NEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYV 811



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 34  NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93
           + PVLR    T  S+L+ C   +D+  G  VH  +    +  +     AL  MYAKC   
Sbjct: 221 SGPVLR----TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRP 276

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
             AR + D M  +D V+++A+++GY  +G  E A+ +                       
Sbjct: 277 GDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGM----------------------- 313

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
                  +VR  +  G RP+AVT+ S+    +    L   +E+H +AV+  +D  + V+T
Sbjct: 314 -------VVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVST 366

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           AI+D Y K G +  A++VFD  + R+ + W A+I  YA +GDA++A++LF  M+  G+  
Sbjct: 367 AILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDV 426

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
             V+  A L AC   G +D+   +   +  + G++ +V     ++ +  + +R   A + 
Sbjct: 427 TDVSVLAALHACGELGFLDEGRRVHELLV-RIGLESNVNVMNALITMYCKCKRTDLAAQV 485

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVE 360
             ++  K     W A++ G + +G  E
Sbjct: 486 FDELGYKTRVS-WNAMILGCTQNGSSE 511



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 175/410 (42%), Gaps = 42/410 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V+WN+++AGY++ G  E    +   M      RPD VT+VSVL AC  +  +  
Sbjct: 286 MPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGA 345

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH F +       + +  A++ +Y KCG++D AR + D M D++ VS++A+I GY  
Sbjct: 346 CREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAE 405

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+ LF                               + M   GV    V++ + 
Sbjct: 406 NGDATEALALF-------------------------------KRMVGEGVDVTDVSVLAA 434

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    L  G+ +H   V+   + N+ V  A+I  Y K      A +VFD    ++ 
Sbjct: 435 LHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR 494

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKAWDIFN 299
           + W A+I     +G +  AV LF+ M    ++PD  T  +++ A A  S  +   W   +
Sbjct: 495 VSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARW--IH 552

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             S +  +   V     ++ + ++  R+S A    +    +     W A+++G    G  
Sbjct: 553 GYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDR-HVITWNAMIHGYGSHGS- 610

Query: 360 ELGKFVCDHLFEIEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             GK   +   E++      N   ++ + +  S AG  DE       MKE
Sbjct: 611 --GKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKE 658



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 16/250 (6%)

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           ASG  P   T +S+  L +  ++L  G+ +H              ATA+ + YAK     
Sbjct: 218 ASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPG 277

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSAC 285
            A+RVFDR   R  + W A+++ YA +G A  AV +   M   +G +PD VT  +VL AC
Sbjct: 278 DARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPAC 337

Query: 286 AHSGLVD-----KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A +  +       A+ +      Q  +  ++    C  G +  AR++ +  +  + +   
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVS-- 395

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS--QAGRWDEADR 398
                W A++ G + +GD      +   +   E  +  +  ++A L++  + G  DE  R
Sbjct: 396 -----WNAMIKGYAENGDATEALALFKRMVG-EGVDVTDVSVLAALHACGELGFLDEGRR 449

Query: 399 VREQMKESGL 408
           V E +   GL
Sbjct: 450 VHELLVRIGL 459


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 254/469 (54%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD  SW +M +GY +   +EE   LFR M      + +  T+ S L A      +  
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHL 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  ++   + +D  + +AL  MY KCGS+  AR + D+  D+D VS++A+I  Y  
Sbjct: 241 GKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFK 300

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                               R E    L  ++  SG+ PN  T S +
Sbjct: 301 EG-------------------------------RREEGFALFSDLLKSGIWPNEFTFSGV 329

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  +  + GK++HGY  +  +D + + A+ ++  Y K G +  A+RVF+      L
Sbjct: 330 LNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDL 389

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++IS YA +G   +A+  F  +L +G QPD +TF  VLSAC H+GLVDK  + F++
Sbjct: 390 VSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDS 449

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  ++G+  + +HYAC++ +LSR+ R+ EA + + KMP++P   +W +LL G  I G+++
Sbjct: 450 IKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLK 509

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L K   + LFEIEPEN   Y  +AN+Y+ AG W     VR+ M   G+ K PG SWIE  
Sbjct: 510 LAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIK 569

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  F+  DTS  KS++I+  L +L   M+EEGYV     +L +VEEE
Sbjct: 570 REVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYVPDTNFVLHDVEEE 618



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 170/322 (52%), Gaps = 3/322 (0%)

Query: 37  VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96
           V RP   T  ++LQ C Q   +  GM+VH     S     + I N ++ MY KC SL  A
Sbjct: 84  VDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNA 143

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + L DEM+++D  S++ +ISGY   G +++A  LF  M      +W A+ SG V++++HE
Sbjct: 144 KRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHE 203

Query: 157 AVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
             L+L R MQ     + N  T+SS  +  +   +L  GKEIHG+ ++   D +  V +A+
Sbjct: 204 EALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSAL 263

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            D Y K G +  A+ +FD+   R ++ WTA+I  Y   G   +  +LF+++L +GI P+ 
Sbjct: 264 SDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNE 323

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            TF+ VL+ACA     +    +   M+ + G  PS    + +V + ++   I  A    +
Sbjct: 324 FTFSGVLNACADHAAEELGKQVHGYMT-RIGFDPSSFAASTLVHMYTKCGNIKNARRVFN 382

Query: 336 KMPVKPSAKVWGALLYGASISG 357
            MP +P    W +L+ G + +G
Sbjct: 383 GMP-RPDLVSWTSLISGYAQNG 403


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 254/471 (53%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+IA Y Q          F+EML    +RPD +TVVS+    GQ SD   
Sbjct: 309 MEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG-MRPDLLTVVSLASIFGQLSDRRI 367

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  VH FV+    +++D+ I NAL+ MYAK GS+D ARA+ +++  +D +S         
Sbjct: 368 GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVIS--------- 418

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTIS 178
                                 WN +I+G  QN      +D    M+    + PN  T  
Sbjct: 419 ----------------------WNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWV 456

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI   +SH   L+ G +IHG  +KN    +++VAT +ID Y K G L  A  +F      
Sbjct: 457 SILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQE 516

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + + W AIIS+   HG   KA+ LF +M  +G++ D +TF ++LSAC+HSGLVD+A   F
Sbjct: 517 TSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCF 576

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M  +Y I+P+++HY CMV +  RA  + +A   VS MP++  A +WG LL    I G+
Sbjct: 577 DTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGN 636

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG F  D L E++ EN G Y++++N+Y+  G+W+ A +VR   ++ GL K PG S + 
Sbjct: 637 AELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVV 696

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               ++ F A + S  +  +IY  L  L   M+  GYV     +L +VEE+
Sbjct: 697 VGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEED 747



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 187/363 (51%), Gaps = 38/363 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN+MI+G+ Q G   E   +   M    V + D VTV S+L  C QS+D+V 
Sbjct: 208 MPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEV-KMDTVTVSSMLPICAQSNDVVG 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH +VI+  ++ D+++ NALI MY+K G L  A+ + D M  +D VS+++II+ Y  
Sbjct: 267 GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYE- 325

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN+     L   +EM   G+RP+ +T+ S+
Sbjct: 326 ------------------------------QNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S+F   S+ + G+ +HG+ V+ R+ + +I +  A+++ YAK G +  A+ VF++   R 
Sbjct: 356 ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRD 415

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +I W  +I+ YA +G AS+A+  +N M+  G  I P+  T+ ++L A +H G + +   I
Sbjct: 416 VISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKI 474

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +  +  +   V    C++ +  +  R+ +A     ++P + S   W A++    I G
Sbjct: 475 HGRLI-KNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIHG 532

Query: 358 DVE 360
             E
Sbjct: 533 HGE 535



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 151/283 (53%), Gaps = 34/283 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++I SWNSM++ Y + G Y +      E+L+   +RPD  T   VL+AC   +D   
Sbjct: 109 IQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD--- 165

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +V++   + D+++  +LI +Y++ G+++ A  +  +M  +D             
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRD------------- 212

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             + +WNA+ISG  QN      L ++  M+   V+ + VT+SS+
Sbjct: 213 ------------------VGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSM 254

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +  +++ GG  +H Y +K+  + +++V+ A+I+ Y+K G L  AQRVFD  + R L
Sbjct: 255 LPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDL 314

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           + W +II+AY  + D   A+  F EML  G++PD +T  ++ S
Sbjct: 315 VSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLAS 357



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 86  MYAKCGSLDYAR---ALLDEMSD-KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           ++  C +++ A+   ALL  +   +D V  + +++ Y   G +  +   F+ ++R  + +
Sbjct: 57  VFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           WN+++S  V+  R+   +D V E+ + SGVRP+  T   +        +L  G+++H + 
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWV 173

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +K  ++ ++YVA ++I  Y++ G +  A +VF     R +  W A+IS +  +G+ ++A+
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEAL 233

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            + + M    ++ D VT +++L  CA S  V     + +    ++G++  V     ++ +
Sbjct: 234 RVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV-LVHLYVIKHGLESDVFVSNALINM 292

Query: 321 LSRARRISEATEFVSKMPVK 340
            S+  R+ +A      M V+
Sbjct: 293 YSKFGRLQDAQRVFDGMEVR 312



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           +F   +N+   K++H   +     +++ + T ++  YA  G L  +   F   + +++  
Sbjct: 57  VFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDK--AWDIFN 299
           W +++SAY   G    ++    E+L+ +G++PD  TF  VL AC      +K   W +  
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVL-- 174

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
               + G +  V   A ++ + SR   +  A +    MPV+     W A++ G   +G+V
Sbjct: 175 ----KMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGS-WNAMISGFCQNGNV 229

Query: 360 ELGKFVCDHL 369
                V D +
Sbjct: 230 AEALRVLDRM 239


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 260/459 (56%), Gaps = 32/459 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+VSW+++IAGYSQ   Y+E   L+  M+N   L  + +   SVL A G+   +  
Sbjct: 294 MVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVG-LATNAIVATSVLPALGKLELLKQ 352

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+HNFV++  +  D+ + +ALI MYA CGS+  A ++ +  SDKD + ++++I GY +
Sbjct: 353 GKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNL 412

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E A   F                               R +  +  RPN +T+ SI
Sbjct: 413 VGDFESAFFTF-------------------------------RRIWGAEHRPNFITVVSI 441

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +    L+ GKEIHGY  K+    N+ V  ++ID Y+K GFL   ++VF +   R++
Sbjct: 442 LPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNV 501

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             +  +ISA  +HG   K ++ + +M   G +P+ VTF ++LSAC+H+GL+D+ W ++N+
Sbjct: 502 TTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNS 561

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P++EHY+CMV ++ RA  +  A +F+++MP+ P A V+G+LL    +   VE
Sbjct: 562 MINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVE 621

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + + + + +++ +++G+Y++++NLY+   RW++  +VR  +K+ GL K PG SWI+  
Sbjct: 622 LTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQVG 681

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLD 459
             +  F A         +I   L  LL +M+ E Y+L +
Sbjct: 682 HCIYVFHATSAFHPAFAKIEETLNSLLLVMKSEDYMLTN 720



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 193/411 (46%), Gaps = 40/411 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  + I++WN+++ G    G + +    +  ML   V  PD  T   VL+AC     +  
Sbjct: 93  LPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGV-TPDNYTYPLVLKACSSLHALQL 151

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH   +    K ++++  A+I M+AKCGS++ AR + +EM D+D  S++A+I G M 
Sbjct: 152 GRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMW 210

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+ LF                               R+M++ G+ P++V ++SI
Sbjct: 211 NGECLEALLLF-------------------------------RKMRSEGLMPDSVIVASI 239

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    +K G  +   AV++ ++ ++YV+ A+ID Y K G    A RVF       +
Sbjct: 240 LPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDV 299

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+ +I+ Y+ +    ++  L+  M+N G+  + +  T+VL A     L+ +  ++ N 
Sbjct: 300 VSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNF 359

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  + G+   V   + ++ + +    I EA E + +        VW +++ G ++ GD E
Sbjct: 360 VLKE-GLMSDVVVGSALIVMYANCGSIKEA-ESIFECTSDKDIMVWNSMIVGYNLVGDFE 417

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLY---SQAGRWDEADRVREQMKESGL 408
              F    ++    E+  N+I + ++    +Q G   +   +   + +SGL
Sbjct: 418 SAFFTFRRIW--GAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGL 466



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 202/499 (40%), Gaps = 82/499 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SW ++I G    G   E   LFR+M  S  L PD V V S+L ACG+   +  
Sbjct: 193 MPDRDLASWTALICGTMWNGECLEALLLFRKM-RSEGLMPDSVIVASILPACGRLEAVKL 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +    + S  + DL++ NA+I MY KCG    A  +   M   D VS          
Sbjct: 252 GMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVS---------- 301

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+ +I+G  QN  ++    L   M   G+  NA+  +S+
Sbjct: 302 ---------------------WSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSV 340

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    LK GKE+H + +K     ++ V +A+I  YA  G +  A+ +F+    + +
Sbjct: 341 LPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDI 400

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-- 298
           ++W ++I  Y   GD   A   F  +     +P+ +T  ++L  C   G + +  +I   
Sbjct: 401 MVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGY 460

Query: 299 -------------NAMSGQYG---------------IQPSVEHYACMVGVLSRARRISEA 330
                        N++   Y                +  +V  Y  M+       +  + 
Sbjct: 461 VTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKG 520

Query: 331 TEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMA 384
             F  +M     +P+   + +LL   S +G ++ G  + + +   + IEP N  +Y  M 
Sbjct: 521 LAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEP-NMEHYSCMV 579

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444
           +L  +AG  D A +   +M  +  A + G           S +      +K E   L+ E
Sbjct: 580 DLIGRAGDLDGAYKFITRMPMTPDANVFG-----------SLLGACRLHNKVELTELLAE 628

Query: 445 RLLGLMREEG--YVLLDEV 461
           R+L L  ++   YVLL  +
Sbjct: 629 RILQLKADDSGHYVLLSNL 647



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           S +++ Y+  G ++ A   F+ +    +  WNA++ GLV        +     M   GV 
Sbjct: 71  SQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVT 130

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T   +    S    L+ G+ +H   +  +   N+YV  A+ID +AK G +  A+R+
Sbjct: 131 PDNYTYPLVLKACSSLHALQLGRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDARRM 189

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           F+    R L  WTA+I     +G+  +A+ LF +M + G+ PD V   ++L AC
Sbjct: 190 FEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPAC 243



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 3/147 (2%)

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
           A+ +++ Y   G L  A   F     + +I W AI+    A G  +KA+  ++ ML +G+
Sbjct: 70  ASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGV 129

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
            PD  T+  VL AC+    +     +   M G+      V+    ++ + ++   + +A 
Sbjct: 130 TPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQ--CAVIDMFAKCGSVEDAR 187

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGD 358
               +MP +  A  W AL+ G   +G+
Sbjct: 188 RMFEEMPDRDLAS-WTALICGTMWNGE 213


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 254/473 (53%), Gaps = 41/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+V+WNS+I+   QGG       LF  M+ S V  PD +T+VS+  A  Q  D + 
Sbjct: 229 MALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC-PDVLTLVSLASAVAQCGDELG 287

Query: 61  GMEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              VH +V      + D+   NA++ MYAK   +D A+ + D + D+D VS         
Sbjct: 288 AKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVS--------- 338

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTIS 178
                                 WN +I+G +QN      + +  +M    G++P   T  
Sbjct: 339 ----------------------WNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFV 376

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+   +S+   L+ G  +H  ++K   + ++YV T +ID YAK G L  A  +F+    R
Sbjct: 377 SVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRR 436

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S   W AII+    HG  +KA+SLF++M    I+PD VTF ++L+AC+H+GLVD+    F
Sbjct: 437 STGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFF 496

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M   YGI P  +HY CMV +L RA ++ EA EF+  MP+KP + VWGALL    I G+
Sbjct: 497 DLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGN 556

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+GK    +LFE++PEN G Y++M+N+Y++ G+WD  D VR  ++   L K PG S +E
Sbjct: 557 VEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSME 616

Query: 419 CSGGLQSFVA--KDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             G +  F +  +     + E+I   L  LL  M+  GYV     +L +VEE+
Sbjct: 617 VKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEED 669



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 39/408 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ +WN+M++G  +     +   L   M+   V   D VT+ SVL  C    D   
Sbjct: 128 MPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG-DAVTLSSVLPMCVVLGDRAL 186

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            + +H + ++  +  +L++CNALI +Y K G L  A  +   M+ +D V++++IIS    
Sbjct: 187 ALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQ 246

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V  A++LF                                 M  SGV P+ +T+ S+
Sbjct: 247 GGKVAAAVELFH-------------------------------GMMESGVCPDVLTLVSL 275

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +   +  G K +H Y  +  +D  +I    A++D YAK   +  AQ+VFD    R 
Sbjct: 276 ASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRD 335

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++ W  +I+ Y  +G A++A+ ++N+M N+ G++P   TF +VL A ++ G + +   + 
Sbjct: 336 VVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM- 394

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +A+S + G+   V    C++ + ++  ++ EA      MP + S   W A++ G  + G 
Sbjct: 395 HALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRR-STGPWNAIIAGLGVHGH 453

Query: 359 --VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
               L  F      EI+P++   ++ +    S AG  D+     + M+
Sbjct: 454 GAKALSLFSQMQQEEIKPDHV-TFVSLLAACSHAGLVDQGRSFFDLMQ 500



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 23/251 (9%)

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
           +++  Y+  G V +A  +F  M    +  WNA++SGL +N R    + L+  M   GV  
Sbjct: 107 SLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG 166

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           +AVT+SS+  +     +      +H YAVK+     ++V  A+ID Y K G L  A  VF
Sbjct: 167 DAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVF 226

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--- 289
                R L+ W +IISA    G  + AV LF+ M+ +G+ PD +T  ++ SA A  G   
Sbjct: 227 GGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDEL 286

Query: 290 --------LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
                   +  + WD+ + ++G             MV + ++  +I  A +    +P + 
Sbjct: 287 GAKSVHCYVRRRGWDVGDIIAGN-----------AMVDMYAKMSKIDAAQKVFDNLPDRD 335

Query: 342 SAKVWGALLYG 352
               W  L+ G
Sbjct: 336 VVS-WNTLITG 345



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFL 225
           A  +RP++ T      L           ++H  A++      N++ + +++  Y + G +
Sbjct: 62  AHPLRPDSFTFPP---LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRV 118

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A RVFD    R +  W A++S    +  A+ AV+L   M+  G+  D VT ++VL  C
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC 178

Query: 286 AHSG-----LVDKAWDIFNAMSGQ 304
              G     LV   + + + +SG+
Sbjct: 179 VVLGDRALALVMHVYAVKHGLSGE 202


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 263/468 (56%), Gaps = 19/468 (4%)

Query: 4   RDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           R +  WN+MI GY+Q GG  EE   LF  M       P   T+  VL AC +S       
Sbjct: 327 RQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKE 386

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH +V++  +  + ++ NAL+ MYA+ G +D A  +   +  +D VS++ +I+G +V G
Sbjct: 387 AVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQG 446

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            + +A  L + M+ P     ++  SG       +  +D  R M      PN +T+ ++  
Sbjct: 447 LISEAFQLVREMQLP-----SSAASGETMLEGDDTSVDGQRCM------PNNITLMTLLP 495

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  +    GKEIHGYAV++  + ++ V +A++D YAK G L  A+ VFDR   R++I 
Sbjct: 496 GCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVIT 555

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           W  +I AY  HG   +A++LF+ M+ NG   P+ VTF A L+AC+HSGLVD+  ++F  M
Sbjct: 556 WNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGM 615

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVE 360
              YG +P+   +AC+V VL RA R+ EA   +S M P +     W  +L    +  +V+
Sbjct: 616 KRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVK 675

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LFE+EP+   +Y+++ N+YS AG W+ +  VR  M++ G+AK PG SWIE  
Sbjct: 676 LGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELD 735

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
           G +  F+A +++  +S Q++  ++ L   MR EGYV     +L +V+E
Sbjct: 736 GAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDE 783



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 134/294 (45%), Gaps = 39/294 (13%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI--VFG 61
           RD VS+NS+I+       +       R+ML    +     T+VSVL AC   +D     G
Sbjct: 116 RDAVSYNSLISALCLFRRWGHALDALRDMLADHEV--SSFTLVSVLLACSHLADQGHRLG 173

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E H F +                   K G LD  R         +   ++A++S Y   
Sbjct: 174 REAHAFAL-------------------KHGFLDKGR---------ERFPFNALLSMYARL 205

Query: 122 GFVEKAMDLF--QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           G V+ A  LF         L TWN +IS LVQ  R E  + ++ +M A GVRP+ VT +S
Sbjct: 206 GLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFAS 265

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-- 236
                S    L  G+E+H + +K +    N +VA+A++D YA    +  A+RVFD     
Sbjct: 266 ALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEH 325

Query: 237 GRSLIIWTAIISAYAAHGDAS-KAVSLFNEM-LNNGIQPDPVTFTAVLSACAHS 288
           GR L +W A+I  YA HG    +A+ LF+ M    G  P   T   VL ACA S
Sbjct: 326 GRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARS 379



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 45/219 (20%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR 136
           + NAL+  YA+CG LD A AL        +D VSY                         
Sbjct: 87  VSNALLTAYARCGDLDAALALFAATPPDLRDAVSY------------------------- 121

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL--KGGK 194
                 N++IS L    R    LD +R+M A     ++ T+ S+    SH ++   + G+
Sbjct: 122 ------NSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLADQGHRLGR 174

Query: 195 EIHGYAVKNRY---DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS----LIIWTAII 247
           E H +A+K+ +    R  +   A++  YA+ G +  AQR+F  F   +    L+ W  +I
Sbjct: 175 EAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLF--FSSGAGVGDLVTWNTMI 232

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           S     G   +AV +  +M+  G++PD VTF + L AC+
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACS 271



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++++WN +I  Y   G  +E  ALF  M+ +    P+ VT ++ L AC  S  +  
Sbjct: 548 LPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDR 607

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           G+E+   +   +  +   ++   ++ +  + G LD A  ++  M+
Sbjct: 608 GLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMA 652


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/471 (36%), Positives = 262/471 (55%), Gaps = 41/471 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY + G Y+E   LF+EM+    +RPD  T+V+V+ AC QS  I  G  
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y+K G                                
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGE------------------------------- 272

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A +LF  +    + +WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 273 VETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 332

Query: 184 FSHFSNLKGGKEIHGY---AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR-FKGRS 239
            +H   +  G+ IH Y    +K        + T++ID YAK G +  AQ+VFD     RS
Sbjct: 333 CAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRS 392

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L  W A+IS +A HG A+ A  +F+ M  NGI+PD +TF  +LSAC+HSG++D   +IF 
Sbjct: 393 LSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFR 452

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M+  Y I P +EHY CM+ +L  +    EA E ++ MP++P   +W +LL    I G++
Sbjct: 453 SMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNL 512

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL-AKIPGRSWIE 418
           ELG+     L +IEP N+G+Y++++N+Y+ AGRW+E  ++R  + + G+  K+PG S IE
Sbjct: 513 ELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIE 572

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 573 IDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 623



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 215/440 (48%), Gaps = 43/440 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L PD  T   +L++C +S     G ++
Sbjct: 53  NLLIWNTMFRGHALSSDPVSALKLYLVMISLGLL-PDSYTFPFLLKSCAKSKIRKEGQQI 111

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++    +D+++  +LI MYA+ G L+ AR + D  S +D VSY+A+I+GY+  G++
Sbjct: 112 HGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYI 171

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVRPNAVTISSIFSL 183
           E A  LF  +    + +WNA+ISG V+   ++  L+L +E M  + VRP+  T+ ++ S 
Sbjct: 172 ESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSA 231

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   +++ G+ +H +   + +  N+ +  A+ID Y+K G +  A  +FD    + +I W
Sbjct: 232 CAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISW 291

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WD------ 296
             +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D   W       
Sbjct: 292 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINK 351

Query: 297 -----IFNAMSGQYGI----------------------QPSVEHYACMVGVLSRARRISE 329
                + N  S Q  +                        S+  +  M+   +   R + 
Sbjct: 352 KLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANA 411

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
           A +  S+M    ++P    +  LL   S SG ++LG+ +   +   +EI P+   +Y  M
Sbjct: 412 AFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPK-LEHYGCM 470

Query: 384 ANLYSQAGRWDEADRVREQM 403
            +L   +G + EA+ +   M
Sbjct: 471 IDLLGHSGLFKEAEEMINTM 490



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 131/271 (48%), Gaps = 12/271 (4%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F  ++ P L  WN +  G   ++   + L L   M + G+ P++ T   +    + 
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G++IHG+ +K  +D +IYV T++I  YA+ G L  A++VFD    R ++ +TA+
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ Y + G    A  LF+E+       D V++ A++S    +G   +A ++F  M     
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGK----DVVSWNAMISGYVETGNYKEALELFKEMMMMTN 217

Query: 307 IQPSVEHYACMVGVLSRARRIS---EATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++P       +V   +++  I        +++      + K+  AL+   S  G+VE   
Sbjct: 218 VRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETAC 277

Query: 364 FVCDHLF--EIEPENT--GNYIIMANLYSQA 390
            + D L+  ++   NT  G Y  M NLY +A
Sbjct: 278 ELFDGLWNKDVISWNTLIGGYTHM-NLYKEA 307



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R + +WN+MI+G++  G       +F  M  + +  PD +T V +L AC  S  +  
Sbjct: 388 MSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGI-EPDDITFVGLLSACSHSGMLDL 446

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G  +   +   +    K++ + C  +I +    G    A  +++ M  + D V + +++ 
Sbjct: 447 GRNIFRSMTRGYEITPKLEHYGC--MIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLK 504

Query: 117 GYMVHGFVE 125
              +HG +E
Sbjct: 505 ACKIHGNLE 513


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 266/465 (57%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ V+W  +I+G+ Q G + E   LF +M  + ++  D   + +++  C    D+  
Sbjct: 351 LHDRNNVAWTVLISGFLQYGCFTESVELFNQM-RAELMTLDQFALATLISGCCSRMDLCL 409

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI MYAKC +L  A A+   M++KD VS++++I+ Y  
Sbjct: 410 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 469

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISS 179
            G V KA + F  M    + TWNA++   +Q+   E  L + + M +   VRP+ VT  +
Sbjct: 470 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 529

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G  VK     +  VA A+I  Y+K G +  A++VFD    + 
Sbjct: 530 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 589

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I+ Y+ HG   +A+ +F+++L  G +PD +++ AVLS C+HSGLV +    F+
Sbjct: 590 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 649

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   + I P +EH++CMV +L RA  ++EA + +  MP+KP+A+VWGALL    I G+ 
Sbjct: 650 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNN 709

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    H+FE++  ++G+Y++MA +Y+ AG+ D++ ++R+ M++ G+ K PG SW+E 
Sbjct: 710 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 769

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +  F A D S  +   I   L+ L+  +   GYV  D    E
Sbjct: 770 DNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSE 814



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 152/286 (53%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN++++GY Q   Y      F  M  S    P+  T+   +++CG       
Sbjct: 117 MPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSL 176

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++   V +   + D  +  AL+ M+ +CG++D A  L   + +      +++++GY+ 
Sbjct: 177 ALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVK 236

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V+ A++LF  M    + +WN ++S L Q+ R    LD+V +MQ+ GVR ++ T +S 
Sbjct: 237 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 296

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S+L+ GK++H   ++N    + YVA+A+++ YAK+G    A+ VF+    R+ 
Sbjct: 297 LTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNN 356

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + WT +IS +  +G  +++V LFN+M    +  D      ++S C 
Sbjct: 357 VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 402



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 196/487 (40%), Gaps = 101/487 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN M++  SQ G   E   +  +M  S  +R D  T  S L AC + S + +
Sbjct: 250 MPERDVVSWNMMVSALSQSGRVREALDMVVDM-QSKGVRLDSTTYTSSLTACARLSSLRW 308

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI +   +D ++ +AL+ +YAK G    A+ + + + D++ V+          
Sbjct: 309 GKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA---------- 358

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W  +ISG +Q       ++L  +M+A  +  +   ++++
Sbjct: 359 ---------------------WTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATL 397

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  G+++H   +K+   + + V+ ++I  YAK   L  A+ +F     + +
Sbjct: 398 ISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI 457

Query: 241 IIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQ----------------- 272
           + WT++I+AY+  G+ +KA   F           N ML   IQ                 
Sbjct: 458 VSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSE 517

Query: 273 ----PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
               PD VT+  +   CA  G  +K  D     + + G+         ++ + S+  RI 
Sbjct: 518 EYVRPDWVTYVTLFKGCADLG-ANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRIL 576

Query: 329 EATEF----------------------------------VSKMPVKPSAKVWGALLYGAS 354
           EA +                                   + K   KP    + A+L G S
Sbjct: 577 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 636

Query: 355 ISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            SG V+ GKF  D +      + G  ++  M +L  +AG   EA  + + M     A++ 
Sbjct: 637 HSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVW 696

Query: 413 GRSWIEC 419
           G     C
Sbjct: 697 GALLSAC 703



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 33/271 (12%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKD 107
           L++CG    +     +H  ++   +   +++ N L+  Y  CG+L D  R LL +++  +
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            ++++ +++GY   G +  A++LF  M    +++WN ++SG  Q+ ++   L+    M  
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150

Query: 168 SGVR-PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           SG   PNA T++                ++     K     +  VA A++D + + G + 
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210

Query: 227 GAQRVFDRFKG-------------------------------RSLIIWTAIISAYAAHGD 255
            A R+F R K                                R ++ W  ++SA +  G 
Sbjct: 211 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 270

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +A+ +  +M + G++ D  T+T+ L+ACA
Sbjct: 271 VREALDMVVDMQSKGVRLDSTTYTSSLTACA 301


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 254/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++++W ++I+G SQ   YE+   LF +M    ++ P+ +T +S L AC     +  
Sbjct: 49  MLERNVITWTAIISGLSQNEMYEDSLGLFVQM-RCGLIEPNFLTYLSSLTACSGLQALEK 107

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V +  I+ +L I +AL+ +Y+KCGSL+ AR + +   + DEVS + I+ G+  
Sbjct: 108 GRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQ 167

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF E+A++ F  M   G                             + V PN V  S++
Sbjct: 168 NGFEEEAIEFFVKMVNIG-----------------------------TEVDPNMV--SAV 196

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  ++L  GK+IH   +K     N +V   +I+ Y+K G L  + +VF+    R+ 
Sbjct: 197 LGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNS 256

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+A+A HGD  +A+ L+ EM+  G  P  +TF ++L AC+H GLVDK      +
Sbjct: 257 VSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKS 316

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI P  EHYAC+V +L RA  ++EA   + ++ +KP   +W ALL   SI GD E
Sbjct: 317 MTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTE 376

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + L  +EP+    Y+++AN+YS  GRWDE  R  ++MKE G+AK  G SWIE  
Sbjct: 377 IGKYAAEQLLLLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEIE 436

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SFV +D    ++E IY +L  L  LM +EGYV
Sbjct: 437 KKVHSFVVEDKKHPQAEIIYGVLAELFRLMIDEGYV 472



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 108/200 (54%)

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MY KCG    A  + D+M  +D VS++ ++SG++ +G ++    +F  M    + TW A+
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           ISGL QN  +E  L L  +M+   + PN +T  S  +  S    L+ G++IHG   K   
Sbjct: 61  ISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGI 120

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
             N+ + +A++D Y+K G L  A+RVF+       +  T I+  +  +G   +A+  F +
Sbjct: 121 QSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVK 180

Query: 266 MLNNGIQPDPVTFTAVLSAC 285
           M+N G + DP   +AVL AC
Sbjct: 181 MVNIGTEVDPNMVSAVLGAC 200


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 241/456 (52%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D++ W+ MIA Y+Q    EE   +F  M    VL P+  T+ S+LQAC    D+  
Sbjct: 307 MPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVL-PNQFTLASLLQACASLVDLQL 365

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++  + M++++ NAL+ MYAKCG ++ +  L  E  +  +VS          
Sbjct: 366 GNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS---------- 415

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN VI G VQ    E  L L ++M    V+   VT SS+
Sbjct: 416 ---------------------WNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSV 454

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L+ G +IH  +VK  YD+N  V  A+ID YAK G +  A+ VFD  +    
Sbjct: 455 LRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQ 514

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS Y+ HG   +A+  F  ML    +PD VTF  +LSAC+++GL+D+    F +
Sbjct: 515 VSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKS 574

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P  EHY CMV +L R+  + +A + V ++P +PS  VW ALL    I  DVE
Sbjct: 575 MVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVE 634

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     + EIEPE+   +++++N+Y+ A RW     +R  MK  G+ K PG SWIE  
Sbjct: 635 LGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQ 694

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G +  F   DTS   ++ I  +LE L    R EGYV
Sbjct: 695 GRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYV 730



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 32/283 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW  M+A Y +   +EE   LF  M      +P+  T  SVL+AC        G  
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRM-RIVGFKPNNFTFASVLKACVGLEVFNVGKA 267

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH    ++    +L++   LI +Y K G +D A  + +EM   D + +S +I+ Y     
Sbjct: 268 VHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQ 327

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A+++F  M+R GL                              V PN  T++S+   
Sbjct: 328 SEEAIEMFCRMRR-GL------------------------------VLPNQFTLASLLQA 356

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   +L+ G +IH + VK   D N++V+ A++D YAK G +  + ++F      + + W
Sbjct: 357 CASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSW 416

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +I  Y   G+  KA+ LF +ML   +Q   VT+++VL ACA
Sbjct: 417 NTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACA 459



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 159/389 (40%), Gaps = 75/389 (19%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+LQ+C ++ D   G  +H  +I+    +DL+  N L+  Y K  SL  A  L DEM D+
Sbjct: 49  SLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDR 108

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS+  +I GY                                Q  R    + L   +Q
Sbjct: 109 NTVSFVTLIQGYS-------------------------------QCLRFSEAIGLFSRLQ 137

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G   N    S++  L       K G  +H    K  +D + +V TA+ID Y+  G+  
Sbjct: 138 GEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAE 197

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A++VFD  + + ++ WT +++ Y  +    +++ LF+ M   G +P+  TF +VL AC 
Sbjct: 198 CARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV 257

Query: 287 -----------------------------------HSGLVDKAWDIFNAMSGQYGIQPSV 311
                                               SG VD A  +F  M      +  V
Sbjct: 258 GLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP-----KDDV 312

Query: 312 EHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDH 368
             ++ M+   +++ +  EA E   +M    V P+     +LL   +   D++LG  +  H
Sbjct: 313 IPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCH 372

Query: 369 LFEIEPE-NTGNYIIMANLYSQAGRWDEA 396
           + ++  + N      + ++Y++ GR + +
Sbjct: 373 VVKVGLDMNVFVSNALMDMYAKCGRMENS 401



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 162/378 (42%), Gaps = 36/378 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VS+ ++I GYSQ   + E   LF  +                            
Sbjct: 105 MPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGE------------------------- 139

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E++ FV  + +K+       +   +AK G   +A  +     D D    +A+I  Y V
Sbjct: 140 GHELNPFVFSTVLKL------LVSAEWAKLGFSVHA-CVYKLGFDSDAFVGTALIDCYSV 192

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G+ E A  +F  ++   + +W  +++  V+N   E  L L   M+  G +PN  T +S+
Sbjct: 193 CGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASV 252

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                       GK +HG A K  Y   ++V   +ID Y K+G +  A +VF+      +
Sbjct: 253 LKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDV 312

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFN 299
           I W+ +I+ YA    + +A+ +F  M    + P+  T  ++L ACA   LVD +  +  +
Sbjct: 313 IPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA--SLVDLQLGNQIH 370

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
               + G+  +V     ++ + ++  R+  + +  S+ P   +   W  ++ G   +G+ 
Sbjct: 371 CHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP-NCTDVSWNTVIVGYVQAGNG 429

Query: 360 ELGKFVCDHLFEIEPENT 377
           E    +   + E + + T
Sbjct: 430 EKALILFKDMLECQVQGT 447


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 253/451 (56%), Gaps = 33/451 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRD+VSW +MI G++Q G   +   ++R M        DGV +V ++QAC    D  F
Sbjct: 145 MVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERT-EGDGVVMVGLIQACTSLGDSKF 203

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH  ++   + MD  +  +LI MYAK G L+ A  + +       + Y ++IS    
Sbjct: 204 GLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEG------IPYKSVIS---- 253

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A+ISG  QN      L  + EMQ SG +P+ V++ S 
Sbjct: 254 ---------------------WGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISS 292

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GK +HG+ VK  Y   +   TA+ID YAK G L  A+ +FD+ + R L
Sbjct: 293 LSACAQVGNLKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIEPRDL 351

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W A+IS+Y  HGD  +A+SLF +M    I PD  TF ++LSAC+HSGLV++    F+ 
Sbjct: 352 ILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHV 411

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  +  IQPS +HYACMV +LSRA ++ EA + +  M +KP   +W ALL G     ++ 
Sbjct: 412 LIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLL 471

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V   + E  P++ G Y++++N +S A +WD+A   R+ MK +G+ K+PG S +E +
Sbjct: 472 IGEMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVN 531

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
           G LQ+F+ +D + ++ + I  IL+ L   MR
Sbjct: 532 GDLQAFLMEDKNHNQYQDILQILDILDNEMR 562



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 24/262 (9%)

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D  S + +I+ Y     +  A ++F+ M +  ++ WN++I    + N  + VL+L   M 
Sbjct: 17  DANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMI 76

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           + G++P++ T +      S   +L  G+ I   AV   Y  +++V +++++ YAK+G + 
Sbjct: 77  SEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMD 136

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ VFD+   R ++ WT +I+ +A  G    A+ ++  M     + D V    ++ AC 
Sbjct: 137 KAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACT 196

Query: 287 -----------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
                      H  +V +  ++ N +      Q S+       G L  A R+ E      
Sbjct: 197 SLGDSKFGLSVHGHMVRREMNMDNVL------QTSLIDMYAKNGKLELASRVFEG----- 245

Query: 336 KMPVKPSAKVWGALLYGASISG 357
            +P K S   WGAL+ G + +G
Sbjct: 246 -IPYK-SVISWGALISGFAQNG 265


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 269/539 (49%), Gaps = 76/539 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V WN+MI G  +   +++   LFREM+   V R D  TV +VL A  +  ++  
Sbjct: 169 MPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGV-RVDSSTVTAVLPAAAELQELKV 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD------------- 107
           GM +    ++       ++   LI +Y+KCG ++ AR L   ++  D             
Sbjct: 228 GMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTA 287

Query: 108 -------------------EVSYSAIIS--------GYM-----VHGFVEK--------- 126
                               VS S I+         G++     +HGF  K         
Sbjct: 288 NGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTV 347

Query: 127 ----------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
                           A  LF       +  WNA+ISG  QN   E  + L +EM  +  
Sbjct: 348 STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEF 407

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
            PNAVTI++I S  +   +L  GK +H        + NIYV+TA++D YAK G +  A +
Sbjct: 408 TPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQ 467

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +FD    ++ + W  +I  Y  HG   +A+ L+NEML+ G  P  VTF +VL AC+H+GL
Sbjct: 468 LFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGL 527

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V +  +IF+ M  +Y I+P +EHYACMV +L R+ ++ +A EF+ KMPV+P   VWG LL
Sbjct: 528 VGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLL 587

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               I  D ++ +   + LFE++P + G Y++++N+YS    + +A  +R+ +K+  LAK
Sbjct: 588 GACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAK 647

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            PG + IE +G    FV+ D S   +  IY  LE+L G MRE GY       L +VEEE
Sbjct: 648 SPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEE 706



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 40/362 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K DI  +N ++ G+S         +L+  +  +  L PD  T    + AC     +  
Sbjct: 70  VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL-- 127

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            M +H   I      ++++ +AL+ +Y K   + YAR + D M ++D V           
Sbjct: 128 -MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTV----------- 175

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I+GLV+N   +  + L REM A GVR ++ T++++
Sbjct: 176 --------------------LWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAV 215

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    LK G  I   A+K  +    YV T +I  Y+K G ++ A+ +F R     L
Sbjct: 216 LPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDL 275

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI--F 298
           I + A+IS + A+G    +V LF E+L +G +    T   ++   +  G +  A  I  F
Sbjct: 276 IAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGF 335

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              SG   + P+V        + ++   I  A     + P K +   W A++ G + +G 
Sbjct: 336 CVKSGII-LNPTVS--TAFTAIYNKLNEIDLARHLFDESPEK-TVVAWNAMISGYTQNGS 391

Query: 359 VE 360
            E
Sbjct: 392 TE 393



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/176 (18%), Positives = 75/176 (42%), Gaps = 6/176 (3%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +++FSL +  S      + H   + N Y  ++   T +            A+ +F     
Sbjct: 13  NTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPK 72

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
             + ++  ++  ++ +   S ++SL+  +  N  + PD  T+   ++AC++    DK   
Sbjct: 73  PDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN----DKHLM 128

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + +A S   G   +V   + +V +  +  R+  A +    MP + +  +W  ++ G
Sbjct: 129 LLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTV-LWNTMING 183


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 260/472 (55%), Gaps = 39/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNSMI G+     Y+    +F+++L    + P+ V+V SVL AC     + F
Sbjct: 306 MPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNF 365

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V++  +    ++ N+L+ MY KC   D    L   + D+D V           
Sbjct: 366 GRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVV----------- 414

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN ++ G VQN++ E   +    M+  G+ P+  + S++
Sbjct: 415 --------------------TWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTV 454

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L  G  IH   +K  Y +N+ +  ++I  YAK G L  A +VF+  +  ++
Sbjct: 455 LHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNV 514

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+ISAY  HG A++ + LF  ML+ GI+P  VTF  VLSAC+H+G V++    FN+
Sbjct: 515 ISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNS 574

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + + P  EHYACMV +L RA  + EA  F+  MP+KP+  VWGALL      G+++
Sbjct: 575 MKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLK 634

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+   + LFE+EP N GNY+++AN+ +++GR +EA+ VR  M  +G+ K PG SWI+  
Sbjct: 635 MGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVK 694

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEE 464
                F A D S   S++IY +LE+L  L++++GYV         L+E EEE
Sbjct: 695 NMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEE 746



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 187/435 (42%), Gaps = 66/435 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           + IV+W S+I   S    + +  +LF +M  S    P+  T  S+L A   +  ++ G +
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPY-PNQFTFSSILSASAATMMVLHGQQ 266

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+ + +     ++++  AL+ MYAKC  +  A  + D+M +++ VS++++I G+  +  
Sbjct: 267 LHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 326

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            ++A+ +F+                           D++RE     V PN V++SS+ S 
Sbjct: 327 YDRAVGVFK---------------------------DVLRE---KTVIPNEVSVSSVLSA 356

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   L  G+++HG  VK       YV  +++D Y K  F     ++F     R ++ W
Sbjct: 357 CANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTW 416

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD 292
             ++  +  +    +A + F  M   GI PD  +F+ VL + A           H  ++ 
Sbjct: 417 NVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIK 476

Query: 293 ----KAWDIFNAMSGQYGIQPS-VEHYACMVGVLSR-----------------ARRISEA 330
               K   I  ++   Y    S V+ Y    G+                    A ++ E 
Sbjct: 477 LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIEL 536

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYS 388
            E +    ++PS   +  +L   S +G VE G    + + +I   N G  +Y  M +L  
Sbjct: 537 FEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLG 596

Query: 389 QAGRWDEADRVREQM 403
           +AG  DEA R  E M
Sbjct: 597 RAGWLDEAKRFIESM 611



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 35/265 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L    Q+  +    ++H  +I ++     ++ N LI +YAKCG L+             
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLN------------- 194

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                             +A+ LF +       + TW ++I+ L   N H   L L  +M
Sbjct: 195 ------------------QALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQM 236

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           + SG  PN  T SSI S  +    +  G+++H    K+ +D NI+V TA++D YAK   +
Sbjct: 237 RCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADM 296

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSA 284
           H A RVFD+   R+L+ W ++I  +  +    +AV +F ++L    + P+ V+ ++VLSA
Sbjct: 297 HSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSA 356

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQP 309
           CA+ G ++    +   +  +YG+ P
Sbjct: 357 CANMGGLNFGRQVHGVVV-KYGLVP 380



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 4/166 (2%)

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGRSLIIWTAI 246
           +LK   +IH   + N Y    ++   +I+ YAK G L+ A  +F       ++++ WT++
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSL 216

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+  +      +A+SLFN+M  +G  P+  TF+++LSA A + +V     + +++  ++G
Sbjct: 217 ITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL-HSLIHKHG 275

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              ++     +V + ++   +  A     +MP + +   W +++ G
Sbjct: 276 FDANIFVGTALVDMYAKCADMHSAVRVFDQMPER-NLVSWNSMIVG 320


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 257/469 (54%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V W +MI G +Q G   E   ++R+M    V   DGV ++ ++QAC        
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRV-EGDGVVMLGLIQACTTLGHSKM 224

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H ++I   I MD+ +  +L+ MYAK G L+ A  +   M  K+ +S          
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVIS---------- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+ISG  QN      L LV +MQ+ G +P++V++ S+
Sbjct: 275 ---------------------WSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSV 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    LK GK +HGY V+ R   +   +TA+ID Y+K G L  A+ VFD+   R  
Sbjct: 314 LLACSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDS 372

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W AII++Y  HG   +A+SLF +M    ++PD  TF ++LSA +HSGLV+K    F+ 
Sbjct: 373 ISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSI 432

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y IQPS +HYACMV +LSRA R+ EA E +  M  +P   +W ALL G    G   
Sbjct: 433 MVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFL 492

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+     + E+ P++ G Y +++N ++ A RWDE   VR+ MK++G+ K+PG S +E +
Sbjct: 493 IGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVN 552

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G L +F+ +D S  + E+I  +L +L   M+  GYV     +L  +EEE
Sbjct: 553 GKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEE 601



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 198/445 (44%), Gaps = 83/445 (18%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN+MI  YS+ G   E  +L+  M +  V RPD  T   VL+AC +S D+  G E    
Sbjct: 72  AWNAMIIAYSRRGAMFEALSLYHRMASEGV-RPDSSTYTVVLKACTRSLDLRSGEETWRQ 130

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
            ++     D+++  A++ +YAKCG +D                               +A
Sbjct: 131 AVDQGYGDDVFVGAAVLNLYAKCGKMD-------------------------------EA 159

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
           M +F  M R  L  W  +I+GL QN +    +D+ R+M    V  + V +  +    +  
Sbjct: 160 MRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTL 219

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            + K G  IHGY ++     ++ V T+++D YAK G L  A  VF R   +++I W+A+I
Sbjct: 220 GHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALI 279

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           S +A +G A  A+ L  +M + G +PD V+  +VL AC+  G +     +       +G 
Sbjct: 280 SGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSV-------HGY 332

Query: 308 QPSVEHYACM-----------VGVLSRARRISEATEF----------------------- 333
                H+ C+            G LS AR + +   F                       
Sbjct: 333 IVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEAL 392

Query: 334 -----VSKMPVKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEPENTGNYIIMAN 385
                + +  VKP    + +LL   S SG VE G++   +  + ++I+P    +Y  M +
Sbjct: 393 SLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEK-HYACMVD 451

Query: 386 LYSQAGRWDEADRVREQM-KESGLA 409
           L S+AGR +EA  + E M  E G+A
Sbjct: 452 LLSRAGRVEEAQELIESMITEPGIA 476



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 90/180 (50%)

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           S + +I  Y   G +E A  +F    + G+  WNA+I    +       L L   M + G
Sbjct: 41  SNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEG 100

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           VRP++ T + +    +   +L+ G+E    AV   Y  +++V  A+++ YAK G +  A 
Sbjct: 101 VRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAM 160

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           RVFD+   R L+ WT +I+  A +G A +AV ++ +M    ++ D V    ++ AC   G
Sbjct: 161 RVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLG 220


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 260/472 (55%), Gaps = 13/472 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I  +N+MI G      ++E   ++  M     L PD  T   +L+AC +  D   G+++
Sbjct: 72  NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEG-LSPDSFTFPFLLKACARLLDSKLGIKL 130

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V+++  + D ++  +L+ +Y KCG +D A  + D++ +K+  +++AIISGY+  G  
Sbjct: 131 HGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKC 190

Query: 125 EKAMDLFQV-------MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
            +A+D+F+        M    + +W+++I G   N   +  LDL  +M   G RP+   +
Sbjct: 191 REAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAM 250

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +    +    L+ G        +N +  N  + TA+ID YAK G +  A  VF   + 
Sbjct: 251 VGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRK 310

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + +++W A IS  A  G    A  LF +M  +GI+PD  TF  +L AC H+GLVD+    
Sbjct: 311 KDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQY 370

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN+M   + + P +EHY CMV +L RA  + EA + V  MP++ +A VWGALL G  +  
Sbjct: 371 FNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHR 430

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D +L + V   L  +EP N+GNY++++N+YS + +W++A ++R  M E G+ K+PG SWI
Sbjct: 431 DTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWI 490

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E  G +  F+  DTS   SE+IY  L  L+  ++  GYV     +L ++EEE
Sbjct: 491 EVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEE 542



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 145/314 (46%), Gaps = 41/314 (13%)

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
           ALL    D+D    + ++      G    +  +F   K P +  +N +I GLV N+  + 
Sbjct: 32  ALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQE 91

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            +++   M+  G+ P++ T   +    +   + K G ++HG  VK   + + +V T+++ 
Sbjct: 92  SIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVS 151

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE---MLNNGIQPD 274
            Y K GF+  A +VFD    +++  WTAIIS Y   G   +A+ +F     + +  ++ D
Sbjct: 152 LYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKD 211

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            V++++++   A +GL  +A D+F  M  + G +P    YA MVGVL    R+       
Sbjct: 212 IVSWSSMIQGYASNGLPKEALDLFFKMLNE-GFRPDC--YA-MVGVLCACARL------- 260

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAG 391
                       GAL  G   S  ++  +F+            GN ++   + ++Y++ G
Sbjct: 261 ------------GALELGNWASNLMDRNEFL------------GNPVLGTALIDMYAKCG 296

Query: 392 RWDEADRVREQMKE 405
           R D A  V   M++
Sbjct: 297 RMDSAWEVFRGMRK 310



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 32/268 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++DIVSW+SMI GY+  G  +E   LF +MLN    RPD   +V VL AC +   +  
Sbjct: 207 MLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEG-FRPDCYAMVGVLCACARLGALEL 265

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G    N +  +    +  +  ALI MYAKCG +D A  +   M  KD V ++A ISG  +
Sbjct: 266 GNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAM 325

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+ A  LF  M++ G+        GL+    H  ++D  R+   S  R        +
Sbjct: 326 SGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMER--------V 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS- 239
           F+L           EI  Y               ++D   + GFL  A ++       + 
Sbjct: 378 FTL---------TPEIEHYG-------------CMVDLLGRAGFLDEAHQLVKSMPMEAN 415

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEML 267
            I+W A++     H D      +  +++
Sbjct: 416 AIVWGALLGGCRLHRDTQLVEGVLKQLI 443



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           LF  F++LK  K +H   ++   D + Y+   ++      G  + + R+F + K  ++ +
Sbjct: 16  LFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFL 75

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-FNAM 301
           +  +I     +    +++ +++ M   G+ PD  TF  +L ACA   L+D    I  + +
Sbjct: 76  FNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACAR--LLDSKLGIKLHGL 133

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             + G +        +V +  +   I  A +    +P K  A  W A+     ISG + +
Sbjct: 134 VVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVA-AWTAI-----ISGYIGV 187

Query: 362 GK 363
           GK
Sbjct: 188 GK 189


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 251/438 (57%), Gaps = 8/438 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+IVSWNS+I  Y Q G  +E  ALF  M+    + PD VT+ SV+ AC   +    
Sbjct: 208 MPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFV-PDEVTLASVMSACAGLAAGRE 266

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G +VH  +++S   + D+ + NAL+ MYAKCG    A+ + D M+ +  VS +++I+GY 
Sbjct: 267 GRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYA 326

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V  A  +F  M    +  WN +I+    N+  E  L L   ++   V P   T  +
Sbjct: 327 KSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGN 386

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKN--RYDR----NIYVATAIIDTYAKTGFLHGAQRVFD 233
           + +  ++ +NL+ G++ H + +K   R+D     +++V  +++D Y KTG +    +VF+
Sbjct: 387 VLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFE 446

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R  + W A+I  YA +G A  A+ LF  ML +  +PD VT   VLSAC HSGLV +
Sbjct: 447 RMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKE 506

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F +M+  +GI P+ +HY CM+ +L RA  + E  E +  MP++P A +W +LL   
Sbjct: 507 GRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGAC 566

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +  ++++G++    LFE++P+N+G Y++++N+Y++ G+W +  RVR  MK  G++K PG
Sbjct: 567 RLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPG 626

Query: 414 RSWIECSGGLQSFVAKDT 431
            SWIE    +  F+A+D 
Sbjct: 627 CSWIEIGRKVNVFLARDN 644



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 116/211 (54%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           + ++ N L+  YA+ GSL  AR + D M  ++  SY+A++S     G  + A+ LF  + 
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
            P   ++NAV++ L Q+ R    L  +  M A     NA + +S  S  +     + G++
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           +H    K+ +  ++Y+ TA++D YAK      AQ+VFD    R+++ W ++I+ Y  +G 
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGP 228

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +A++LF  M+ +G  PD VT  +V+SACA
Sbjct: 229 VDEALALFVRMMKDGFVPDEVTLASVMSACA 259



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 37/295 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D  S+N+++A  +Q G   +    F   +++     +  +  S L AC        G +V
Sbjct: 111 DQCSYNAVVAALAQHGRGGDA-LRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V +S    D++I  AL+ MYAKC   + A+ + D M +++ VS              
Sbjct: 170 HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVS-------------- 215

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++I+   QN   +  L L   M   G  P+ VT++S+ S  
Sbjct: 216 -----------------WNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSAC 258

Query: 185 SHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           +  +  + G+++H   VK +R+  ++ +  A++D YAK G    A+ VFDR   RS++  
Sbjct: 259 AGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSE 318

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           T++I+ YA   +   A ++F +M+   +    V +  +++  AH+   ++A  +F
Sbjct: 319 TSMITGYAKSANVGDAQAVFLQMVEKNV----VAWNVLIATYAHNSEEEEALRLF 369



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 20/191 (10%)

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
           F G + ++ T ++SAYA  G    A  +F+ M +     +  ++ A+LSACA  G  D A
Sbjct: 46  FAGETFLLNT-LLSAYARLGSLHDARRVFDGMPHR----NTFSYNALLSACARLGRADDA 100

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP---SAKVWGALLY 351
             +F A+       P    Y  +V  L++  R  +A  F++ M       +A  + + L 
Sbjct: 101 LALFGAIP-----DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALS 155

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
             +       G+ V  H    +  +  +  I   + ++Y++  R +EA +V + M E  +
Sbjct: 156 ACASEKASRTGEQV--HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNI 213

Query: 409 AKIPGRSWIEC 419
             +   S I C
Sbjct: 214 --VSWNSLITC 222


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 247/455 (54%), Gaps = 35/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D++SW +MI+G  Q    +    +FR ML S V+ P   T+ SVL AC +      
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVM-PSTATIASVLAACAELGSFPL 366

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +++   IK+D+   N+L+ MYAKCG L                           
Sbjct: 367 GTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHL--------------------------- 399

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E++  +F  M R  + +WNA++SG  QN      L L  EM+ +  RP+++T+ S+
Sbjct: 400 ----EQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSL 455

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L  GK IH +  K+     I + TA++D Y+K G L  AQ+ FDR   + L
Sbjct: 456 LQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDL 515

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W++II+ Y +HG    A+ ++++ L+ GIQP+ V + ++LSAC+H+GLVD+    F++
Sbjct: 516 VSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHS 575

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI+P +EH AC+V +LSRA R+ EA  F  +M  KPS  V G LL     +G+VE
Sbjct: 576 MTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVE 635

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG  V   +  ++P N GNY+ +A+ Y+   RWD    V  QMK   L K+PG S+IE  
Sbjct: 636 LGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELH 695

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G + +F    +S  + E+   I++R+L L +   +
Sbjct: 696 GTITTFFTDHSSHPQFEE---IIDRVLLLNKRRRF 727



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 42/391 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWNS+++GY+Q G   E   L   M  +  + PD  T  S++ A    S +  
Sbjct: 207 MDARDVISWNSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGV 265

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ + ++ D  I  +LIGMY KCG+                            
Sbjct: 266 GKMVHGHILRAGLEQDSHIETSLIGMYLKCGN---------------------------- 297

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V  A  +F+ M    + +W A+ISGLVQN+  +  + + R M  S V P+  TI+S+
Sbjct: 298 ---VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV 354

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +   G  +HGY ++ R   +I    +++  YAK G L  +  VFDR   R +
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W AI+S +A +G   KA+ LFNEM     +PD +T  ++L ACA  G + +   I N 
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNF 474

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGD 358
           ++ +  + P +     +V + S+   +  A +   +MP +     W +++  YG+   G+
Sbjct: 475 VT-KSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSIIAGYGSHGKGE 532

Query: 359 VELGKFVCDHLFE-IEPENTGNYIIMANLYS 388
             L +   D L   I+P    N++I  ++ S
Sbjct: 533 TAL-RMYSDFLHTGIQP----NHVIYLSILS 558



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 35/279 (12%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S+N++I   S  G + +    +  ML++    PD  T  S+++AC        G+  H  
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDT-PPDAHTFPSLVKACTSLDLFSHGLSFHQR 73

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI      D +I  +LI  Y+K G    AR + D M D++ V ++ +I  Y   G  + A
Sbjct: 74  VIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVA 133

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
             ++ +M+R G+   +  + GL+       VL+LV                       H 
Sbjct: 134 FSMYNIMRRQGIQPSSVTMLGLL-----SGVLELV-----------------------HL 165

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L      H   ++  +  ++ +A ++++ Y K G +  AQ +F+    R +I W +++
Sbjct: 166 QCL------HACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLV 219

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           S YA  G+  + + L   M  +GI+PD  TF +++SA A
Sbjct: 220 SGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAA 258



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 41/303 (13%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   ++NA+I+ L        VL     M ++   P+A T  S+    +       G   
Sbjct: 11  PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H   + + Y  + Y+AT++I+ Y+K G    A++VFD    R+++ WT +I  Y   G+ 
Sbjct: 71  HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSA--------CAHS-------------------- 288
             A S++N M   GIQP  VT   +LS         C H+                    
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190

Query: 289 ----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKP 341
               G V+ A  +F  M  +      V  +  +V   ++   I E  + + +M    ++P
Sbjct: 191 YCKCGRVEDAQALFELMDAR-----DVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEP 245

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY-IIMANLYSQAGRWDEADRVR 400
             + +G+L+  A++   + +GK V  H+     E   +    +  +Y + G  + A R+ 
Sbjct: 246 DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIF 305

Query: 401 EQM 403
           E M
Sbjct: 306 EGM 308


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 246/448 (54%), Gaps = 34/448 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D V WN MIA Y++ G   EC  LF+ M  S + R D  T + V+ +  Q   + +
Sbjct: 287 MPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGI-RSDLFTALPVISSIAQLKCVDW 345

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H  ++ +     + + N+LI MY +C  LD A  + + M+DK  +S          
Sbjct: 346 GKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVIS---------- 395

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+I G V+N +    L L  +M++ G++ + V + +I
Sbjct: 396 ---------------------WSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINI 434

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGR 238
              F H   L+  K +HGY++K        + TA++ TYAK G +  AQR+F+  +   +
Sbjct: 435 LPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDK 494

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            LI+W ++ISA+A HGD S+   L+N M  +  +PD VTF  +L+AC +SGLV+K  + F
Sbjct: 495 DLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFF 554

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M+  YG QPS EHYACMV +L RA  ISEA E V  MP+KP A+VWG LL    +   
Sbjct: 555 KEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPG 614

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +L +F  + L  +EP N GNYI+++N+Y+ AG+WD   ++R  ++  GL KIPG SW+E
Sbjct: 615 SKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLE 674

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERL 446
            +G +  F   D +  ++  IY IL  L
Sbjct: 675 INGHVTEFRVADQTHPRAGDIYTILGNL 702



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 171/421 (40%), Gaps = 72/421 (17%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           L PD  T  ++L+     + I     VH   I S +  DL +  A++ +Y+K  SL  AR
Sbjct: 222 LVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDAR 281

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            L D+M +KD V                                WN +I+   +  +   
Sbjct: 282 KLFDKMPEKDRV-------------------------------VWNIMIAAYAREGKPTE 310

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L+L + M  SG+R +  T   + S  +    +  GK+ H + ++N  D  + V  ++ID
Sbjct: 311 CLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLID 370

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y +   L  A ++F+    +S+I W+A+I  Y  +G +  A+SLF++M ++GIQ D V 
Sbjct: 371 MYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVI 430

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ--PSVEHYACMV----GVLSRARRI---- 327
              +L A  H G ++      +  S + G+   PS+     +     G +  A+R+    
Sbjct: 431 MINILPAFVHIGALENV-KYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEE 489

Query: 328 -----------------------SEATEFVSKMPV---KPSAKVWGALLYGASISGDVEL 361
                                  S+  +  ++M     KP    +  LL     SG VE 
Sbjct: 490 KIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEK 549

Query: 362 GKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           GK     + E    +P    +Y  M NL  +AG   EA  + + M     A++ G     
Sbjct: 550 GKEFFKEMTESYGCQPSQE-HYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSA 608

Query: 419 C 419
           C
Sbjct: 609 C 609



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 180/418 (43%), Gaps = 53/418 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  +N+++   ++ G  E    ++++M+ +  + PD  T   VL++C   S++ FG  +
Sbjct: 89  NLTLFNAILRNLTRYGESERTLLVYQQMV-AKSMHPDEETYPFVLRSCSSFSNVGFGRTI 147

Query: 65  HNFVIESHIKMDLW--ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           H ++++  +  DL+  +  AL  MY +C   + A  L D+ S KD               
Sbjct: 148 HGYLVK--LGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKD--------------- 190

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                           L   +++ +   QN+  E +  +   M A  + P++ T  ++  
Sbjct: 191 ----------------LGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLR 234

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  ++++  K +H  A+ ++   ++ V TA++  Y+K   L  A+++FD+   +  ++
Sbjct: 235 FIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVV 294

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAWDI 297
           W  +I+AYA  G  ++ + LF  M  +GI+ D  T   V+S+ A    VD      A  +
Sbjct: 295 WNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHIL 354

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            N    Q  +  S+    C   +L  A +I        K  +  SA + G +  G S++ 
Sbjct: 355 RNGSDSQVSVHNSLIDMYCECKILDSACKI--FNWMTDKSVISWSAMIKGYVKNGQSLTA 412

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANL---YSQAGRWDEADRVREQMKESGLAKIP 412
                K   D +         +++IM N+   +   G  +    +     + GL  +P
Sbjct: 413 LSLFSKMKSDGI-------QADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLP 463



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 20/283 (7%)

Query: 79  ICNALIGMYAKCGSLDY-----ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQV 133
           + N L  ++++C S+ +     AR +L        +S S +I  Y   G +  ++ +F  
Sbjct: 26  LLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLS-SKLIDCYANLGLLNHSLQVFCS 84

Query: 134 MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
           +  P L+ +NA++  L +    E  L + ++M A  + P+  T   +    S FSN+  G
Sbjct: 85  VIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFG 144

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           + IHGY VK  +D    VATA+ + Y +      A ++FD+   + L  W + ++     
Sbjct: 145 RTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKDL-GWPSSLTTEGPQ 203

Query: 254 GDASKAV-SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-----WDIFNAMSGQYGI 307
            D  + +  +F  M+   + PD  TF  +L   A    +  A       I + +SG   +
Sbjct: 204 NDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLV 263

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
             +V      + + S+ R + +A +   KMP K    VW  ++
Sbjct: 264 NTAV------LSLYSKLRSLVDARKLFDKMPEKDRV-VWNIMI 299


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 266/465 (57%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ V+W  +I+G+ Q G + E   LF +M  + ++  D   + +++  C    D+  
Sbjct: 331 LHDRNNVAWTVLISGFLQYGCFTESVELFNQM-RAELMTLDQFALATLISGCCSRMDLCL 389

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI MYAKC +L  A A+   M++KD VS++++I+ Y  
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 449

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISS 179
            G V KA + F  M    + TWNA++   +Q+   E  L + + M +   VRP+ VT  +
Sbjct: 450 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 509

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G  VK     +  VA A+I  Y+K G +  A++VFD    + 
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I+ Y+ HG   +A+ +F+++L  G +PD +++ AVLS C+HSGLV +    F+
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 629

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   + I P +EH++CMV +L RA  ++EA + +  MP+KP+A+VWGALL    I G+ 
Sbjct: 630 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNN 689

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    H+FE++  ++G+Y++MA +Y+ AG+ D++ ++R+ M++ G+ K PG SW+E 
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +  F A D S  +   I   L+ L+  +   GYV  D    E
Sbjct: 750 DNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSE 794



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 152/286 (53%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN++++GY Q   Y      F  M  S    P+  T+   +++CG       
Sbjct: 97  MPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++   V +   + D  +  AL+ M+ +CG++D A  L   + +      +++++GY+ 
Sbjct: 157 ALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVK 216

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V+ A++LF  M    + +WN ++S L Q+ R    LD+V +MQ+ GVR ++ T +S 
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S+L+ GK++H   ++N    + YVA+A+++ YAK+G    A+ VF+    R+ 
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNN 336

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + WT +IS +  +G  +++V LFN+M    +  D      ++S C 
Sbjct: 337 VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 382



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 195/481 (40%), Gaps = 101/481 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN M++  SQ G   E   +  +M  S  +R D  T  S L AC + S + +
Sbjct: 230 MPERDVVSWNMMVSALSQSGRVREALDMVVDM-QSKGVRLDSTTYTSSLTACARLSSLRW 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI +   +D ++ +AL+ +YAK G    A+ + + + D++ V+          
Sbjct: 289 GKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA---------- 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W  +ISG +Q       ++L  +M+A  +  +   ++++
Sbjct: 339 ---------------------WTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATL 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  G+++H   +K+   + + V+ ++I  YAK   L  A+ +F     + +
Sbjct: 378 ISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI 437

Query: 241 IIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQ----------------- 272
           + WT++I+AY+  G+ +KA   F           N ML   IQ                 
Sbjct: 438 VSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSE 497

Query: 273 ----PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
               PD VT+  +   CA  G  +K  D     + + G+         ++ + S+  RI 
Sbjct: 498 EYVRPDWVTYVTLFKGCADLG-ANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRIL 556

Query: 329 EATEF----------------------------------VSKMPVKPSAKVWGALLYGAS 354
           EA +                                   + K   KP    + A+L G S
Sbjct: 557 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 616

Query: 355 ISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            SG V+ GKF  D +      + G  ++  M +L  +AG   EA  + + M     A++ 
Sbjct: 617 HSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVW 676

Query: 413 G 413
           G
Sbjct: 677 G 677



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 33/271 (12%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKD 107
           L++CG    +     +H  ++   +   +++ N L+  Y  CG+L D  R LL +++  +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            ++++ +++GY   G +  A++LF  M    +++WN ++SG  Q+ ++   L+    M  
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130

Query: 168 SGVR-PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           SG   PNA T++                ++     K     +  VA A++D + + G + 
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190

Query: 227 GAQRVFDRFKG-------------------------------RSLIIWTAIISAYAAHGD 255
            A R+F R K                                R ++ W  ++SA +  G 
Sbjct: 191 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +A+ +  +M + G++ D  T+T+ L+ACA
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACA 281


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/472 (35%), Positives = 262/472 (55%), Gaps = 39/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNSMI G+     Y+    +F+++L    + P+ V+V SVL AC     + F
Sbjct: 71  MPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNF 130

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V++  +    ++ N+L+ MY KC                              
Sbjct: 131 GRQVHGVVVKFGLVPLTYVMNSLMDMYFKCR----------------------------- 161

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             F ++ + LFQ +    + TWN ++ G VQN++ E   +    M+  G+ P+  + S++
Sbjct: 162 --FFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTV 219

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L  G  IH   +K  Y +N+ +  ++I  YAK G L  A +VF+  +  ++
Sbjct: 220 LHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNV 279

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+ISAY  HG A++ + LF  ML+ GI+P  VTF  VLSAC+H+G V++    FN+
Sbjct: 280 ISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNS 339

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + + P  EHYACMV +L RA  + EA  F+  MP+KP+  VWGALL      G+++
Sbjct: 340 MKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLK 399

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+   + LFE+EP N GNY+++AN+ +++GR +EA+ VR  M  +G+ K PG SWI+  
Sbjct: 400 MGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVK 459

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEE 464
                F A D S   S++IY +LE+L  L++++GYV         L+E EEE
Sbjct: 460 NMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEE 511



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 65/399 (16%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+  T  S+L A   +  ++ G ++H+ + +     ++++  AL+ MYAKC  +  A  +
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+M +++ VS++++I G+  +   ++A+ +F+                           
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFK--------------------------- 100

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           D++RE     V PN V++SS+ S  ++   L  G+++HG  VK       YV  +++D Y
Sbjct: 101 DVLRE---KTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMY 157

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K  F     ++F     R ++ W  ++  +  +    +A + F  M   GI PD  +F+
Sbjct: 158 FKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFS 217

Query: 280 AVLSACA-----HSG------------------------LVDKAWDIFNAMSGQYGIQP- 309
            VL + A     H G                        +  K   + +A     GI+  
Sbjct: 218 TVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH 277

Query: 310 SVEHYACMVGVLSR---ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           +V  +  M+        A ++ E  E +    ++PS   +  +L   S +G VE G    
Sbjct: 278 NVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHF 337

Query: 367 DHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQM 403
           + + +I   N G  +Y  M +L  +AG  DEA R  E M
Sbjct: 338 NSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESM 376



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M+ SG  PN  T SSI S  +    +  G+++H    K+ +D NI+V TA++D YAK   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLS 283
           +H A RVFD+   R+L+ W ++I  +  +    +AV +F ++L    + P+ V+ ++VLS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 284 ACAHSG 289
           ACA+ G
Sbjct: 121 ACANMG 126


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 256/455 (56%), Gaps = 1/455 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RD+  ++S++A  S     E    L R ML++  LRPD   + S+  A  +   +  G 
Sbjct: 66  RRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGK 125

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H   + S    D  + ++LI MY KCG  D AR + D +  K+ V ++A+ISGY+++G
Sbjct: 126 QLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNG 185

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
             ++A++LF+ M    L  W A+ISG V++    + + L  +M+  GV   +A  +SS  
Sbjct: 186 RSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAI 245

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +  +    G+++H   ++  +  ++ V  A++D Y+K   +H A+ VF+   GR +I
Sbjct: 246 GGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDII 305

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT ++   A HG A +A SL++ M+  G++P+ VTF  ++ AC+H+GLV K   +F++M
Sbjct: 306 SWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSM 365

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            G+YGI P ++HY C + +LSR+  ++EA E ++ MP  P    W +LL       + E+
Sbjct: 366 KGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEM 425

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
              V D+L E+ P+    Y++++N+Y+  G+WD  D VR+ M +  + K PG SWIE   
Sbjct: 426 SIRVADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGR 485

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + F A +   D  E+I   LE L+  MR+ GYV
Sbjct: 486 EFRLFHAGEVPIDLREEILGFLEELVSEMRQRGYV 520



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 36/220 (16%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           L+  YAK   L   R L DE   +D                               L  +
Sbjct: 44  LVSAYAKSRLLPDTRLLFDETPRRD-------------------------------LHLY 72

Query: 143 NAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           +++++ +  +   E VL L+R M  A  +RP+   ++SI S  +   +L  GK++HG+ V
Sbjct: 73  SSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFV 132

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            + Y  +  V +++ID Y K G    A++VFD    ++ ++WTA+IS Y  +G + +A+ 
Sbjct: 133 ASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALE 192

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           LF  M    +      +TA++S    SG    A  +F  M
Sbjct: 193 LFRSMPGRTL----FAWTALISGFVRSGESVSAVKLFVDM 228



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 134/306 (43%), Gaps = 54/306 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVL---QACGQSSD 57
           M  R + +W ++I+G+ + G       LF +M      R DGV++        A G ++D
Sbjct: 197 MPGRTLFAWTALISGFVRSGESVSAVKLFVDM------RRDGVSIDDAFVLSSAIGGAAD 250

Query: 58  I---VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           +   V G ++H+  +       + + NA++ MY+KC  +  AR + +E++ +D +S++ +
Sbjct: 251 LAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTM 310

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           + G   HG  E+A  L+                                 M  +GV+PN 
Sbjct: 311 LVGEAQHGRAEEAFSLYD-------------------------------RMVLAGVKPNE 339

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVF 232
           VT   +    SH   ++ G+++   ++K  Y  N  +   T  +D  +++G L  A+ + 
Sbjct: 340 VTFVGLIYACSHAGLVQKGRQLFD-SMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELI 398

Query: 233 DRFK-GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGL 290
                      W +++SA   + +A  ++ + + +L   ++P  P T+  + +  A    
Sbjct: 399 TTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLE--LRPKYPSTYVLLSNVYA---- 452

Query: 291 VDKAWD 296
           V+  WD
Sbjct: 453 VNGKWD 458


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 246/448 (54%), Gaps = 34/448 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D V WN MIA Y++ G   EC  LF+ M  S + R D  T + V+ +  Q   + +
Sbjct: 172 MPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGI-RSDLFTALPVISSIAQLKCVDW 230

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H  ++ +     + + N+LI MY +C  LD A  + + M+DK  +S          
Sbjct: 231 GKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVIS---------- 280

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+I G V+N +    L L  +M++ G++ + V + +I
Sbjct: 281 ---------------------WSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINI 319

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGR 238
              F H   L+  K +HGY++K        + TA++ TYAK G +  AQR+F+  +   +
Sbjct: 320 LPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDK 379

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            LI+W ++ISA+A HGD S+   L+N M  +  +PD VTF  +L+AC +SGLV+K  + F
Sbjct: 380 DLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFF 439

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M+  YG QPS EHYACMV +L RA  ISEA E V  MP+KP A+VWG LL    +   
Sbjct: 440 KEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPG 499

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +L +F  + L  +EP N GNYI+++N+Y+ AG+WD   ++R  ++  GL KIPG SW+E
Sbjct: 500 SKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLE 559

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERL 446
            +G +  F   D +  ++  IY IL  L
Sbjct: 560 INGHVTEFRVADQTHPRAGDIYTILGNL 587



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 170/415 (40%), Gaps = 72/415 (17%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           L PD  T  ++L+     + I     VH   I S +  DL +  A++ +Y+K  SL  AR
Sbjct: 107 LVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDAR 166

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            L D+M +KD V                                WN +I+   +  +   
Sbjct: 167 KLFDKMPEKDRV-------------------------------VWNIMIAAYAREGKPTE 195

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L+L + M  SG+R +  T   + S  +    +  GK+ H + ++N  D  + V  ++ID
Sbjct: 196 CLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLID 255

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y +   L  A ++F+    +S+I W+A+I  Y  +G +  A+SLF++M ++GIQ D V 
Sbjct: 256 MYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVI 315

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ--PSVEHYACMV----GVLSRARRI---- 327
              +L A  H G ++      +  S + G+   PS+     +     G +  A+R+    
Sbjct: 316 MINILPAFVHIGALENV-KYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEE 374

Query: 328 -----------------------SEATEFVSKMPV---KPSAKVWGALLYGASISGDVEL 361
                                  S+  +  ++M     KP    +  LL     SG VE 
Sbjct: 375 KIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEK 434

Query: 362 GKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
           GK     + E    +P    +Y  M NL  +AG   EA  + + M     A++ G
Sbjct: 435 GKEFFKEMTESYGCQPSQE-HYACMVNLLGRAGLISEAGELVKNMPIKPDARVWG 488



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 150/354 (42%), Gaps = 45/354 (12%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           + PD  T   VL++C   S++ FG  +H ++++    +   +  AL  MY +C   + A 
Sbjct: 6   MHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAH 65

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            L D+ S KD                               L   +++ +   QN+  E 
Sbjct: 66  QLFDKRSVKD-------------------------------LGWPSSLTTEGPQNDNGEG 94

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           +  +   M A  + P++ T  ++    +  ++++  K +H  A+ ++   ++ V TA++ 
Sbjct: 95  IFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLS 154

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y+K   L  A+++FD+   +  ++W  +I+AYA  G  ++ + LF  M  +GI+ D  T
Sbjct: 155 LYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFT 214

Query: 278 FTAVLSACAHSGLVD-----KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
              V+S+ A    VD      A  + N    Q  +  S+    C   +L  A +I     
Sbjct: 215 ALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKI--FNW 272

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
              K  +  SA + G +  G S++      K   D +         +++IM N+
Sbjct: 273 MTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGI-------QADFVIMINI 319



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 14/192 (7%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M A  + P+  T   +    S FSN+  G+ IHGY VK  +D    VATA+ + Y +   
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV-SLFNEMLNNGIQPDPVTFTAVLS 283
              A ++FD+   + L  W + ++      D  + +  +F  M+   + PD  TF  +L 
Sbjct: 61  FENAHQLFDKRSVKDL-GWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLR 119

Query: 284 ACAHSGLVDKA-----WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
             A    +  A       I + +SG   +  +V      + + S+ R + +A +   KMP
Sbjct: 120 FIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAV------LSLYSKLRSLVDARKLFDKMP 173

Query: 339 VKPSAKVWGALL 350
            K    VW  ++
Sbjct: 174 EKDRV-VWNIMI 184


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 256/453 (56%), Gaps = 32/453 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +DI+ +N M  GY++        +LF E+L S +L PD  T  S+L+AC  S  +  GM 
Sbjct: 93  KDIILFNIMARGYARSNSPYLAFSLFGELLCSGLL-PDDYTFSSLLKACASSKALREGMG 151

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F ++  +  +++IC  LI MYA+C  ++ AR + DEM                    
Sbjct: 152 LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEM-------------------- 191

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                      ++P + ++NA+I+G  ++++    L L RE+QAS + P  VT+ S+   
Sbjct: 192 -----------EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS 240

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  GK IH Y  K  +D+ + V TA+ID +AK G L  A  +F+  + R    W
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +A+I A+A HGD  KA+S+F EM   G++PD +TF  +L AC+H+GLV++    F +MS 
Sbjct: 301 SAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            YGI P ++HY CMV +L RA  + EA  FV K+ +K +  +W  LL   S  G+VE+ K
Sbjct: 361 TYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAK 420

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V + +FE++  + G+Y+I++NLY++ GRW++ + +R+ MK+ G+ K+PG S +E +  +
Sbjct: 421 RVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F + D     S ++   L+ L+  ++  GYV
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYV 513



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 39/316 (12%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG---MYAKCGSLDYARALLDE 102
           +S+L  C   +++    ++  + I+++++ D+ +   LI    +      +D+A  L D+
Sbjct: 33  LSLLSKCTSLNEL---KQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQ 89

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           + DKD +                    LF +M R           G  ++N       L 
Sbjct: 90  ILDKDII--------------------LFNIMAR-----------GYARSNSPYLAFSLF 118

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            E+  SG+ P+  T SS+    +    L+ G  +H +AVK   + NIY+   +I+ YA+ 
Sbjct: 119 GELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAEC 178

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
             ++ A+ VFD  +   ++ + AII+ YA     ++A+SLF E+  + I+P  VT  +V+
Sbjct: 179 NDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVI 238

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
            +CA  G +D    I   +  + G    V+    ++ + ++   +++A      M V+ +
Sbjct: 239 MSCALLGALDLGKWIHEYVKKK-GFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDT 297

Query: 343 AKVWGALLYGASISGD 358
            + W A++   +  GD
Sbjct: 298 -QAWSAMIVAFATHGD 312



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 36/262 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +  IVS+N++I GY++     E  +LFRE+  S +  P  VT++SV+ +C     +  
Sbjct: 191 MEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNI-EPTDVTMLSVIMSCALLGALDL 249

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V +      + +  ALI M+AKCGSL  A ++ + M  +D  ++SA+I  +  
Sbjct: 250 GKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFAT 309

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   KA+ +F+ MKR                                GVRP+ +T   +
Sbjct: 310 HGDGLKAISMFEEMKR-------------------------------EGVRPDEITFLGL 338

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
               SH   ++ G+  + Y++   Y     I     ++D   + G L  A    D+ + +
Sbjct: 339 LYACSHAGLVEQGRG-YFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIK 397

Query: 239 SL-IIWTAIISAYAAHGDASKA 259
           +  I+W  ++SA + HG+   A
Sbjct: 398 ATPILWRTLLSACSTHGNVEMA 419



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 123/280 (43%), Gaps = 45/280 (16%)

Query: 167 ASGVRPNAVTISSI--FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID---TYAK 221
           +S    N   I+ +   SL S  ++L   K+I  Y +K     +I V T +I+       
Sbjct: 17  SSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPT 76

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
           T ++  A  +FD+   + +I++  +   YA       A SLF E+L +G+ PD  TF+++
Sbjct: 77  TSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSL 136

Query: 282 LSACAHSGLVDKAWDIF-------------------------NAMSGQYGI-----QPSV 311
           L ACA S  + +   +                          N M+   G+     QP +
Sbjct: 137 LKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCI 196

Query: 312 EHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDH 368
             Y  ++   +R+ + +EA     ++    ++P+     +++   ++ G ++LGK++ ++
Sbjct: 197 VSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEY 256

Query: 369 LFEIEPENTGNYI----IMANLYSQAGRWDEADRVREQMK 404
              ++ +    Y+     + +++++ G   +A  + E M+
Sbjct: 257 ---VKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMR 293


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 250/446 (56%), Gaps = 1/446 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNSMI GY+Q G   E  +LF EM     L  D  T+VS+L AC Q  ++  
Sbjct: 173 MVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLE-DEFTLVSLLIACSQEGNLEI 231

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ S  ++DL + +AL+ MY KCG L  AR   + M  K  VS+++++     
Sbjct: 232 GRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTK 291

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG V  A   F  M    + +WNA+IS  VQ  +    LDL  +MQ+ G+ P+ +T+ ++
Sbjct: 292 HGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAV 351

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  GK +H Y   N Y+ ++ +  +++D YAK G +  A  +F     R++
Sbjct: 352 LSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNV 411

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II   A HG A   ++ F  M+ +   PD +TF A+LSAC+H GL++     F +
Sbjct: 412 VSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFES 471

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++  VEHYACMV +L R   + +A   + +MP+KP   VWGALL    I G+V+
Sbjct: 472 MRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVK 531

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+ V   L E+E  + G +++++NL  +  +W++  R+R+ MKE G  K  G S IE +
Sbjct: 532 IGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEIN 591

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
             +  F  +D   ++S +IY ++++L
Sbjct: 592 NSIHEFGVEDIRHERSSEIYAVVDQL 617



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 186/437 (42%), Gaps = 56/437 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D V +N++I  Y       E   L R ML   +L P+  T+  V++AC  +      + V
Sbjct: 76  DRVMYNTIIRAYCNSSCPREALRLHRGMLRRGIL-PNEFTLPFVVKACTIAQAREHALAV 134

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   +   +   +++ NAL+  YA  GSL  +R   DEM D++ VS++++I GY   G  
Sbjct: 135 HGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDT 194

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSI 180
            +   LF  M+R G       +  L+     E  L++ R     M  SG R + +  S++
Sbjct: 195 REVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESAL 254

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             ++    +L   +       +    +++   T+++    K G ++ A+  FD    R++
Sbjct: 255 VDMYGKCGDLWMARR----CFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNI 310

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           + W A+IS Y   G   +A+ L+N+M + G+ PD +T  AVLSA                
Sbjct: 311 VSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLY 370

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                               A  G VD A  +F+ M  +     +V  +  ++G L+   
Sbjct: 371 IRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNR-----NVVSWNVIIGGLAMHG 425

Query: 326 RISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCD---HLFEIEPENTGN 379
           R  +   F   M      P    + ALL   S  G +E G+   +   H++ ++ E   +
Sbjct: 426 RALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHE-VEH 484

Query: 380 YIIMANLYSQAGRWDEA 396
           Y  M +L  + G  ++A
Sbjct: 485 YACMVDLLGRRGHLEKA 501



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 7/310 (2%)

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
           L   SD    SY A+      HG +  A  LF  +  P    +N +I     ++     L
Sbjct: 40  LSAASDLLLASYCALAKAG--HGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREAL 97

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
            L R M   G+ PN  T+  +    +     +    +HG A++      ++V  A++ +Y
Sbjct: 98  RLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSY 157

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           A  G L  ++R FD    R+++ W ++I  YA  GD  +  SLF EM   G   D  T  
Sbjct: 158 ASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLV 217

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           ++L AC+  G ++    +   M    G +  +   + +V +  +   +  A      MP+
Sbjct: 218 SLLIACSQEGNLEIGRLVHCRMLVS-GSRVDLILESALVDMYGKCGDLWMARRCFEMMPI 276

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           K S   W ++L   +  G V   +   DH+ E    N  ++  M + Y Q G+  EA  +
Sbjct: 277 K-SVVSWTSMLCAQTKHGSVNAARCWFDHMPE---RNIVSWNAMISCYVQRGQCHEALDL 332

Query: 400 REQMKESGLA 409
             QM+  GLA
Sbjct: 333 YNQMQSQGLA 342


>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Glycine max]
          Length = 522

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 246/448 (54%), Gaps = 7/448 (1%)

Query: 9   WNSMIAGYS-QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           + +MI  Y+     +    +LFR ML S   RP+       L+ C +S        +H  
Sbjct: 73  FTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCPESCA---AESLHAQ 129

Query: 68  VIESHIKMDLWICNALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           +++S       +  AL+  Y+K  G L  A+ + DEMSD+  VS++A++SG+   G VE 
Sbjct: 130 IVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVES 189

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F  M    + +WNA+I+G  QN      ++L R M     RPN VT+    S   H
Sbjct: 190 AVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGH 249

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G+ IHGY  KN    + +V  A++D Y K G L  A++VF+    + L  W ++
Sbjct: 250 MGMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSM 309

Query: 247 ISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           I+ +A HG +  A+++F +M+  G  ++PD VTF  +L+AC H GLV+K +  F  M  +
Sbjct: 310 INCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQE 369

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI+P +EHY C++ +L RA R  EA + V  M ++P   VWG+LL G  + G  +L +F
Sbjct: 370 YGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEF 429

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               L EI+P N G  I++AN+Y + G+WDE   V   +K+    K+PG SWIE    + 
Sbjct: 430 AAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSYKVPGCSWIEVDDQVH 489

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMRE 452
            F + D S  K+E +Y++LE L+G   E
Sbjct: 490 QFYSLDKSNPKTEDLYIVLESLVGFRNE 517



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 38/264 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN++IAG +Q G + +   LFR M+     RP+GVTVV  L ACG    +  
Sbjct: 197 MLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFE-CNRPNGVTVVCALSACGHMGMLQL 255

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V ++ +  D ++ NAL+ MY KCGSL  AR + +   +K   S++++I+ + +
Sbjct: 256 GRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFAL 315

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  + A+ +F+ M   G                              GVRP+ VT   +
Sbjct: 316 HGQSDSAIAIFEQMVEGG-----------------------------GGVRPDEVTFVGL 346

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +  +H   ++ G       V+    +  I     +ID   + G    A    D  KG S
Sbjct: 347 LNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEA---MDVVKGMS 403

Query: 240 L----IIWTAIISAYAAHGDASKA 259
           +    ++W ++++    HG    A
Sbjct: 404 MEPDEVVWGSLLNGCKVHGRTDLA 427


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 253/472 (53%), Gaps = 43/472 (9%)

Query: 36  PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY 95
           P L P  + +    ++C  +  +V G ++H+      +  ++++ ++ I MYA+CG  D 
Sbjct: 6   PGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDD 65

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQV---------------------- 133
           A  + +EM  +D VS++A+ISG+   G   +AMD+F+                       
Sbjct: 66  AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 125

Query: 134 ----------------MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                           M+  GL +WNA+++    N  H   ++L   MQ  G+ P+AVT+
Sbjct: 126 KARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 185

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +++       S L  GK IH    + R   ++ +  A++D YA  G L  A+ VFD    
Sbjct: 186 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGT 245

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R ++ WT+IISAY  HG   +A+ LF +M   G++PD + F A+L+AC+H+GL+D     
Sbjct: 246 RDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY 305

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F +M+ ++ I P +EHYACMV +L RA  I EA +F+  MP+KP+ +VWGALL    I  
Sbjct: 306 FYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHS 365

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++++G    D L  + P+ TG Y++++N+Y++AGRW +   VR  M+  G+ K+PG S  
Sbjct: 366 NMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNA 425

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           E    + +F   DTS  +S+ IY  L  LL  +RE GY       L +VEEE
Sbjct: 426 ELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEE 477



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 1/161 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + ++SWN+M+A Y+    + E   LF  M    +  PD VT+ +VL +CG+ S +  
Sbjct: 142 MRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGI-EPDAVTLATVLPSCGEVSALSL 200

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  +    +   + + NAL+ MYA CG L  AR + D M  +D VS+++IIS Y  
Sbjct: 201 GKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR 260

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           HG   +A+DLF+ M   GL   +     ++    H  +LD+
Sbjct: 261 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM 301



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 11/206 (5%)

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q  G+ P  + +   F   +    L  G++IH    +   D N++VA + I  YA+ G  
Sbjct: 4   QGPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRP 63

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSA 284
             A ++F+  + R ++ W A+IS +A  G   +A+ +F E++     +PD  T  ++L +
Sbjct: 64  DDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS 123

Query: 285 CAHSGLVDKAW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---V 339
              + + D A    +F+ M  +  I      +  M+ V +      EA E   +M    +
Sbjct: 124 MGKARVEDIALLKGVFDEMRFKGLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGI 178

Query: 340 KPSAKVWGALLYGASISGDVELGKFV 365
           +P A     +L        + LGK +
Sbjct: 179 EPDAVTLATVLPSCGEVSALSLGKRI 204



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW S+I+ Y + G   E   LF +M     L PD +  V++L AC  +  +  
Sbjct: 243 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQG-LEPDSIAFVAILAACSHAGLLDM 301

Query: 61  GME-VHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G    ++   E HI  K++ + C  ++ +  + G +  A   +  M  K +E  + A++ 
Sbjct: 302 GKHYFYSMTSEFHIAPKLEHYAC--MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLG 359

Query: 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
              +H  ++  +     + R  P  + +  ++S +       A + +VR  M++ G++
Sbjct: 360 ACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIK 417


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/500 (31%), Positives = 270/500 (54%), Gaps = 41/500 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  +N++I G ++   +E   + F  ML   + RPD +T+  VL++     D+  G  +
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLSI-RPDRLTLPFVLKSVAALVDVGLGRCL 160

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE---------------------- 102
           H  V++  ++ D ++  +L+ MY K G L +   L DE                      
Sbjct: 161 HGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCK 220

Query: 103 -------------MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
                        M +++  S++++I+G++ +G +++A +LF  M    + +W  +I+G 
Sbjct: 221 VGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGF 280

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            QN  HE  L +   M   GVRPN +T+ S     +    L+ G+ IH Y   N +  N 
Sbjct: 281 SQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNR 340

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            + TA++D YAK G +  A RVF   KG+ L+ W+ +I  +A HG   +A+  F +M + 
Sbjct: 341 GIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSA 400

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           GI PD V F A+L+AC+HSG VD+  + F +M   Y I+P+++HY  +V +L RA R+ E
Sbjct: 401 GINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDE 460

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A  F+  MP+ P   +WGAL        ++E+ +   + L ++EP++ G+Y+ ++N+Y+ 
Sbjct: 461 ALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAA 520

Query: 390 AGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGL 449
            GRW++ +RVR  MK  G+ K PG S+IE  G + SFVA D +  ++E+I L LE +   
Sbjct: 521 VGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITAS 580

Query: 450 MREEGYV-----LLDEVEEE 464
            ++EGY+     +L  +EEE
Sbjct: 581 AKQEGYMPETAWVLHNIEEE 600



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 40/264 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSW +MI G+SQ G +E+  ++F  ML   V RP+ +TVVS L AC +   +  
Sbjct: 265 MPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGV-RPNDLTVVSALLACTKIGALQV 323

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +HN++  +  +++  I  AL+ MYAKCG++  A  +  E   KD +++S +I G+ +
Sbjct: 324 GERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAI 383

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  ++A+  F  MK                               ++G+ P+ V   +I
Sbjct: 384 HGCFDQALQCFVKMK-------------------------------SAGINPDEVIFLAI 412

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA----TAIIDTYAKTGFLHGAQRVFDRFK 236
            +  SH  N+  G     +    R D +I       T I+D   + G L  A        
Sbjct: 413 LTACSHSGNVDQGL---NFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMP 469

Query: 237 -GRSLIIWTAIISAYAAHGDASKA 259
                +IW A+  A  AH +   A
Sbjct: 470 INPDFVIWGALFCACRAHKNIEMA 493



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 154/335 (45%), Gaps = 28/335 (8%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A+ +F+    P L  +NA+I GL +N+R E  +     M    +RP+ +T+  +   
Sbjct: 88  LDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKS 147

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD----RFKGRS 239
            +   ++  G+ +HG  +K   + + +V  +++D Y K G L    ++FD    R K  S
Sbjct: 148 VAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAES 207

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++W  +I+     GD SKA SLF  M     + +  ++ ++++    +G +D+A ++F 
Sbjct: 208 ILLWNVLINGCCKVGDLSKAASLFEAM----PERNAGSWNSLINGFVRNGDLDRARELFV 263

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASIS 356
            M      + +V  +  M+   S+     +A     +M    V+P+     + L   +  
Sbjct: 264 QMP-----EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKI 318

Query: 357 GDVELGKFVCDHL----FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
           G +++G+ + ++L    F++   N G    + ++Y++ G    A RV  + K   L    
Sbjct: 319 GALQVGERIHNYLSSNGFQL---NRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWS 375

Query: 413 GRSWIECSGG-----LQSFVAKDTSGDKSEQIYLI 442
              W     G     LQ FV   ++G   +++  +
Sbjct: 376 VMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFL 410


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 257/441 (58%), Gaps = 1/441 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+VSW  M+  Y Q   Y+E   LF +M NS V+ PD + + +VL ACG    +  
Sbjct: 211 MAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVV-PDQLILATVLPACGHIRHLRI 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H++++ S + +   I +ALI +YA C +++ A  L +EM  KD VS +A++SGY  
Sbjct: 270 GKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYAR 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +  VE A  +F  M    + +W+A+ISG V +N+    L L   MQ  G+R + +T+ S+
Sbjct: 330 NRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSV 389

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++  +L   K IH +   +  ++ +++  A+ID +AK G ++ A  VF+    +++
Sbjct: 390 ISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNV 449

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WT++ISA+A HGD   ++ LF +M + G +P+ VTF ++L AC H+GLV +   +F++
Sbjct: 450 ITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSS 509

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  QYGI+P  EHY CMV +L RA+ + EA   +  M ++P+  +WG+LL    + GD++
Sbjct: 510 MVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLK 569

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG F    + +++P + G  +++  +Y ++   + A  VR  MK   ++K  G SW+E +
Sbjct: 570 LGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMELN 629

Query: 421 GGLQSFVAKDTSGDKSEQIYL 441
                F A      +S +I+L
Sbjct: 630 EPFHEFAAGGEKHPESGKIFL 650



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 163/339 (48%), Gaps = 15/339 (4%)

Query: 25  CKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84
           C  L R  L +P  R     + S  +  G  + +      H   + +    D ++  AL 
Sbjct: 136 CACLRRAGLPAPGPRALPALLRSAARCEGAGAYVA---ATHALAVRTGALDDGFVGTALA 192

Query: 85  GMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNA 144
           G YA CG +   R + D M+ +D VS+  ++  Y      ++A+ LF  MK  G+     
Sbjct: 193 GAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQL 252

Query: 145 VISGLVQNNRHEAVLDLVRE----MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +++ ++    H   L + +     M  S +   A   S++ SL++  +N++  ++++   
Sbjct: 253 ILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEM 312

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
            +    +++  +TA++  YA+   +  A+ +FD    + ++ W+A+IS Y      ++A+
Sbjct: 313 PR----KDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEAL 368

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVG 319
           SLFN M   GI+ D +T  +V+SACA+ G +DKA W   +A     G+   +     ++ 
Sbjct: 369 SLFNGMQECGIRSDEITMLSVISACANLGSLDKAKW--IHAFIKNSGLNKVLHICNALID 426

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + ++   I+ A    ++MP+K +   W +++   ++ GD
Sbjct: 427 MFAKCGGINLALNVFNEMPLK-NVITWTSMISAFAMHGD 464


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 252/468 (53%), Gaps = 38/468 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SK+++V+WN+MI  Y Q   Y+   A F+ +L   + +PD  T  S+L  C     +  
Sbjct: 468 ISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGI-KPDSSTFTSILNVCKSPDALEL 526

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V + +I +  + DL I NAL+ M+  CG L         MS                
Sbjct: 527 GKWVQSLIIRAGFESDLHIRNALVSMFVNCGDL---------MS---------------- 561

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 AM+LF  M    L +WN +I+G VQ+  ++   D  + MQ SGV+P+ +T + +
Sbjct: 562 ------AMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGL 615

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ +H    +   D ++ V T +I  Y K G +  A  VF     +++
Sbjct: 616 LNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNV 675

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT++I+ YA HG   +A+ LF +M   G++PD +TF   LSACAH+GL+ +    F +
Sbjct: 676 YSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFES 735

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I+P +EHY CMV +  RA  + EA EF++KM VKP +++WGALL    +  DVE
Sbjct: 736 MK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVE 794

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V     E++P + G Y+I++N+Y+ AG W E  ++R+ M + G+ K PG+SWIE  
Sbjct: 795 LAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVD 854

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
           G +  F + D +  + E+I+  L RL   M++ GYV     +L +VE+
Sbjct: 855 GRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVED 902



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 154/299 (51%), Gaps = 32/299 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+ SWN ++ GY Q   YEE   L  +M+   V +PD  T V +L AC  + ++  
Sbjct: 165 MPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGV-KPDKYTFVYMLNACADAKNVDK 223

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+ + ++ +    DL++  ALI M+ KCG +D A  + + +  +D ++++++I+G   
Sbjct: 224 GGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR 283

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           H   ++A +LFQV                               M+  GV+P+ V   S+
Sbjct: 284 HRQFKQACNLFQV-------------------------------MEEEGVQPDKVAFVSL 312

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H   L+ GK +H    +   D  IYV TA++  Y K G +  A  VF+  KGR++
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + WTA+I+ +A HG   +A   FN+M+ +GI+P+ VTF ++L AC+    + +   I +
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 146/285 (51%), Gaps = 32/285 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+++W SMI G ++   +++   LF+ M    V +PD V  VS+L+AC     +  
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGV-QPDKVAFVSLLKACNHPEALEQ 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  + E  +  ++++  AL+ MY KCGS+                           
Sbjct: 325 GKRVHARMKEVGLDTEIYVGTALLSMYTKCGSM--------------------------- 357

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E A+++F ++K   + +W A+I+G  Q+ R E       +M  SG+ PN VT  SI
Sbjct: 358 ----EDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSI 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S LK G++IH   +K  Y  +  V TA++  YAK G L  A+ VF+R   +++
Sbjct: 414 LGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNV 473

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           + W A+I+AY  H     AV+ F  +L  GI+PD  TFT++L+ C
Sbjct: 474 VAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVC 518



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 219/489 (44%), Gaps = 84/489 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++VSW +MIAG++Q G  EE    F +M+ S +  P+ VT +S+L AC + S +  G +
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGI-EPNRVTFMSILGACSRPSALKQGRQ 428

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+ +I++    D  +  AL+ MYAKCGSL  AR + + +S ++ V+++A+I+ Y+ H  
Sbjct: 429 IHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEK 488

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            + A+  FQ + +                                G++P++ T +SI ++
Sbjct: 489 YDNAVATFQALLK-------------------------------EGIKPDSSTFTSILNV 517

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                 L+ GK +    ++  ++ ++++  A++  +   G L  A  +F+    R L+ W
Sbjct: 518 CKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSW 577

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----------------- 286
             II+ +  HG+   A   F  M  +G++PD +TFT +L+ACA                 
Sbjct: 578 NTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITE 637

Query: 287 ------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                               G +D A  +F+ +      + +V  +  M+   ++  R  
Sbjct: 638 AALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-----KKNVYSWTSMITGYAQHGRGK 692

Query: 329 EATEFVSKMP---VKPSAKVWGALLYGASISGDVELG--KFVCDHLFEIEPENTGNYIIM 383
           EA E   +M    VKP    +   L   + +G ++ G   F     F IEP    +Y  M
Sbjct: 693 EALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPR-MEHYGCM 751

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQ----- 438
            +L+ +AG   EA     +M+    +++ G     C   L   +A+  +  K E      
Sbjct: 752 VDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDD 811

Query: 439 -IYLILERL 446
            +Y+IL  +
Sbjct: 812 GVYVILSNI 820



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 179/377 (47%), Gaps = 36/377 (9%)

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           ++SP ++    T  S+LQ C +  ++  G  +HN +  S I+ D+++ N LI MYAKCG+
Sbjct: 95  VDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGN 154

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
            + A+ + DEM DKD                               + +WN ++ G VQ+
Sbjct: 155 TNSAKQIFDEMPDKD-------------------------------VYSWNLLLGGYVQH 183

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
            R+E    L  +M   GV+P+  T   + +  +   N+  G E+    +   +D +++V 
Sbjct: 184 RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG 243

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           TA+I+ + K G +  A +VF+    R LI WT++I+  A H    +A +LF  M   G+Q
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQ 303

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           PD V F ++L AC H   +++   +   M  + G+   +     ++ + ++   + +A E
Sbjct: 304 PDKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLDTEIYVGTALLSMYTKCGSMEDALE 362

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIMANLYSQA 390
            V  +    +   W A++ G +  G +E      + + E  IEP N   ++ +    S+ 
Sbjct: 363 -VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP-NRVTFMSILGACSRP 420

Query: 391 GRWDEADRVREQMKESG 407
               +  ++ +++ ++G
Sbjct: 421 SALKQGRQIHDRIIKAG 437



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 126/272 (46%), Gaps = 13/272 (4%)

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           NA ++ L +  +    + ++  + +  ++ +  T SS+  L     NL  G+ IH +   
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           ++   +I++   +I  YAK G  + A+++FD    + +  W  ++  Y  H    +A  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
             +M+ +G++PD  TF  +L+ACA +  VDK  ++F+ +    G    +     ++ +  
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA-GWDTDLFVGTALINMHI 251

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE------IEPEN 376
           +   + +A +  + +P +     W +++ G +        K  C+ LF+      ++P+ 
Sbjct: 252 KCGGVDDALKVFNNLP-RRDLITWTSMITGLARHRQF---KQACN-LFQVMEEEGVQPDK 306

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              ++ +    +     ++  RV  +MKE GL
Sbjct: 307 VA-FVSLLKACNHPEALEQGKRVHARMKEVGL 337


>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
 gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
          Length = 906

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 263/462 (56%), Gaps = 12/462 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF-- 60
           + D V+W ++++ +++ G + +   LF EM  S     +  ++   L AC  + D+    
Sbjct: 444 RPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGC-EGNAESMAVALSACPYAGDLALAK 502

Query: 61  GMEVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H   V++  +   L++ N+LI MY K G +D A+    + + K+ V+++ +I+ Y 
Sbjct: 503 GKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYA 562

Query: 120 VHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
                +KA+D+   M++      P + +W+AVI G   +   +  L+L R MQ   + PN
Sbjct: 563 AARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPN 622

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            VT++++ S       L+ G+E+HG+A+K   DR+  V   +I+ YAK G + GA++VFD
Sbjct: 623 VVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFD 682

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             K R LI W ++++ Y  HG   +A++LF +M    ++PD VTF AVLSAC H+G V +
Sbjct: 683 GMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTE 742

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
              +F+ M   + I PS+EHY CMV +L RA  + +A+E V  MPV+P   VWGALL   
Sbjct: 743 GRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSC 802

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I GD  + +    ++ + E ++TGN++++ NLY+  G WDE+ +VR   KE+GL K PG
Sbjct: 803 RIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPG 862

Query: 414 RSWIECSGGLQSFVAKDTSGD--KSEQIYLILERLLGLMREE 453
           +SWIE    + +F A     +   +E ++ +L+ L   M +E
Sbjct: 863 QSWIEVDNKVVAFAAGSAPPNLTGAEDVFGMLDDLYAEMEDE 904



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 7/126 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWNSM+AGY   G  +E  ALF +M  + V  PDGVT V+VL ACG +  +  
Sbjct: 684 MKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATV-EPDGVTFVAVLSACGHAGRVTE 742

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G  + + ++ +H     M+ + C  ++ +  + G L  A  L++ M  + ++  + A+++
Sbjct: 743 GRRLFDRMVRAHKISPSMEHYTC--MVYLLGRAGLLRDASELVETMPVRPDLCVWGALLN 800

Query: 117 GYMVHG 122
              +HG
Sbjct: 801 SCRIHG 806



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           WN ++   +  +R +  L L R M+A S   PN+ T+    +L +  S  +    +H +A
Sbjct: 315 WNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLP--LALRAAASP-RVASAVHAHA 371

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHGDASKA 259
           +         VA  I+  Y++ G    A+RVFD    GR+   W A+ISAY++  D   A
Sbjct: 372 LHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAA 431

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
              F  M   G +PD VT+TA+LSA A SG       +F  M
Sbjct: 432 RDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEM 473


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 258/456 (56%), Gaps = 31/456 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++++W ++I+G +Q G++E    LF+EM++   + P+ +T +S+L AC     +  
Sbjct: 143 MGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKE 202

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +++  I+ DL I +AL+ MY+K G +  A  + +   + D VS + I++G+  
Sbjct: 203 GCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTH 262

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ +F                                +M   G+  +   +S +
Sbjct: 263 NGCEEEAIQIF-------------------------------LKMLKMGIEIDGNVVSVV 291

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +F   ++L+ G+++H + VK  +  N +V+  +I+ Y+K G L  + +VFDR + R+ 
Sbjct: 292 LGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNS 351

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+A+A HGDA KA+ L+ +M   G +P  VTF ++L AC+H+GLV K  +   +
Sbjct: 352 VTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKS 411

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +G+ P  EH+AC+V +L RA  +SEA  F+ K+P +P   VW ALL   S+ GD +
Sbjct: 412 MTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSK 471

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  +HLF   P++   Y+++AN+YS  G W E  R   +MKE G AK  G SWIE  
Sbjct: 472 IGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEID 531

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SF   D    ++E IY +L  L  LM +EGYV
Sbjct: 532 KKVHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYV 567



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 188/408 (46%), Gaps = 58/408 (14%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLW----ICNALIGMYAKCGSLDYARALLDEM 103
           +L  CG+  ++  G  +H  +I+S    + +    I N+LI MY +CG L  A  + DEM
Sbjct: 51  LLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEM 110

Query: 104 SDKDEVSYSAIISGYMVHG--FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
             +D +S++A+I G++ +G  F    M +F  M    + TW AVISGL QN  HE  L L
Sbjct: 111 VTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKL 170

Query: 162 VREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
            +EM + G V PN++T  S+ +  S    LK G +IHG  +K     ++ + +A++D Y+
Sbjct: 171 FKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYS 230

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD------ 274
           K+G +  A ++F+  +   ++  T I++ +  +G   +A+ +F +ML  GI+ D      
Sbjct: 231 KSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSV 290

Query: 275 -----------------------------PVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
                                        P     +++  +  G +D++  +F+ M  + 
Sbjct: 291 VLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERN 350

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDVELG 362
            +      +  M+   +R     +A +    M +   KP+   + +LL+  S +G V+ G
Sbjct: 351 SVT-----WNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKG 405

Query: 363 -----KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
                    DH      E   ++  + ++  +AG   EA    E++ E
Sbjct: 406 MEFLKSMTKDHGMNPRSE---HHACVVDMLGRAGMLSEARNFIEKLPE 450


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 258/453 (56%), Gaps = 9/453 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSW ++I GY + G  +E + ++ +M    +     +    +       +D +F
Sbjct: 292 MPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMF 351

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                   I +H   D+   N++I  Y++ G +D A  L  +M  K+ VS++ +ISGY  
Sbjct: 352 SR------IGAH---DVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQ 402

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +++A ++FQ M+   + +WN++I+G +QNN +   L  +  M   G +P+  T +  
Sbjct: 403 AGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACT 462

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ + L+ G ++H Y +K+ Y  +++V  A+I  YAK G +  A++VF   +   L
Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDL 522

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W ++IS YA +G A+KA   F +M +  + PD VTF  +LSAC+H+GL ++  DIF  
Sbjct: 523 ISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKC 582

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I+P  EHY+C+V +L R  R+ EA   V  M VK +A +WG+LL    +  ++E
Sbjct: 583 MIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLE 642

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F  + LFE+EP N  NYI ++N++++AGRW+E +RVR  M+     K PG SWIE  
Sbjct: 643 LGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQ 702

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
             +Q F++ D +  + + I +IL  L   MR++
Sbjct: 703 NQIQHFLSHDPAKLRPKNIQIILNTLAAHMRDK 735



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 172/364 (47%), Gaps = 34/364 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R++VSWN+MIAGY      EE   LF  M   P    D  +   ++    +   +  
Sbjct: 74  MSLRNLVSWNTMIAGYLHNNMVEEASELFDVM---P--ERDNFSWALMITCYTRKGKLEK 128

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+   V +   K+D    NA+I  YAK G  + A+ + ++M  KD VSY+++++GY  
Sbjct: 129 ARELLELVPD---KLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQ 185

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +  A+  F+ M    + +WN +++G V++    +   L  ++      PNAV+  ++
Sbjct: 186 NGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP----NPNAVSWVTM 241

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDR----NIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
               + +  +   +E+        +DR    N+    A+I TY +   +  A ++F +  
Sbjct: 242 LCGLAKYGKMAEAREL--------FDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP 293

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +  + WT II+ Y   G   +A  ++N+M    I       TA++S    +G +D+A  
Sbjct: 294 HKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQ----TALMSGLIQNGRIDEADQ 349

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F+ +         V  +  M+   SR+ R+ EA     +MP+K S   W  ++ G + +
Sbjct: 350 MFSRIGAH-----DVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVS-WNTMISGYAQA 403

Query: 357 GDVE 360
           G ++
Sbjct: 404 GQMD 407



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 157/332 (47%), Gaps = 46/332 (13%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N++I + AK   +  AR L D+MS ++ VS++ +I+GY+ +  VE+A +LF VM      
Sbjct: 52  NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNF 111

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W  +I+   +  + E   +L+       + P+ +  +   ++            I GYA
Sbjct: 112 SWALMITCYTRKGKLEKARELLE------LVPDKLDTACWNAM------------IAGYA 153

Query: 201 VKNRYD-----------RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
            K +++           +++    +++  Y + G +H A + F+    R+++ W  +++ 
Sbjct: 154 KKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAG 213

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           Y   GD S A  LF ++ N    P+ V++  +L   A  G + +A ++F+ M  +     
Sbjct: 214 YVKSGDLSSAWQLFEKIPN----PNAVSWVTMLCGLAKYGKMAEARELFDRMPSK----- 264

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL 369
           +V  +  M+    +  ++ EA +   KMP K S   W  ++ G    G ++  + V + +
Sbjct: 265 NVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVS-WTTIINGYIRVGKLDEARQVYNQM 323

Query: 370 FEIEP--ENTGNYIIMANLYSQAGRWDEADRV 399
               P  + T    +M+ L  Q GR DEAD++
Sbjct: 324 ----PCKDITAQTALMSGLI-QNGRIDEADQM 350



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 157/324 (48%), Gaps = 22/324 (6%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N  I    K G ++ A  +   M+ K+ V+Y+++IS    +  +  A  LF  M    L 
Sbjct: 21  NRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLV 80

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN +I+G + NN  E   +L   M     R N  + + + + ++    L+  +E+    
Sbjct: 81  SWNTMIAGYLHNNMVEEASELFDVMPE---RDN-FSWALMITCYTRKGKLEKARELLEL- 135

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           V ++ D   +   A+I  YAK G  + A++VF++   + L+ + ++++ Y  +G    A+
Sbjct: 136 VPDKLDTACW--NAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLAL 193

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
             F  M    +    V++  +++    SG +  AW +F  +       P+   +  M+  
Sbjct: 194 QFFESMTERNV----VSWNLMVAGYVKSGDLSSAWQLFEKIPN-----PNAVSWVTMLCG 244

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGN 379
           L++  +++EA E   +MP K +   W A++  A+   D+++ + V   LF+  P +++ +
Sbjct: 245 LAKYGKMAEARELFDRMPSK-NVVSWNAMI--ATYVQDLQVDEAV--KLFKKMPHKDSVS 299

Query: 380 YIIMANLYSQAGRWDEADRVREQM 403
           +  + N Y + G+ DEA +V  QM
Sbjct: 300 WTTIINGYIRVGKLDEARQVYNQM 323


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 248/457 (54%), Gaps = 57/457 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M++R+  SWNSMI GY Q G  +E   LF++M LN   ++PD  ++ S+L +C   SD  
Sbjct: 339 MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVSLSDSQ 396

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G E+HNF++ + ++ +  +   L+ MYAKCGS+DYA  + D+   KD            
Sbjct: 397 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDR----------- 445

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                               + WN++++G       +   +   EM  S +  + +T+ +
Sbjct: 446 ------------------NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 487

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I +L                         + + TA++D Y+K G +  A+ VFD   G++
Sbjct: 488 IVNL-------------------------LVLETALVDMYSKCGAITKARTVFDNMNGKN 522

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+IS Y+ HG + +A+ L+ EM   G+ P+ VTF A+LSAC+H+GLV++   IF 
Sbjct: 523 IVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFT 582

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   Y I+   EHY CMV +L RA R+ +A EFV KMP++P    WGALL    +  D+
Sbjct: 583 SMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 642

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ++G+     LFE++P+N G Y+IM+N+Y+ AGRW E + +R+ MK  G+ K PG SWIE 
Sbjct: 643 DMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 702

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  +Q F A   +  K+E+IY  L  L    +  GY+
Sbjct: 703 NSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYI 739



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 210/422 (49%), Gaps = 56/422 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M +R+ V+WNS+I+  +Q G + +   LF  M  S   ++PD  T  ++L  C    +  
Sbjct: 236 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G ++H  +I ++I  ++ +   L+ MY++CG L+YA+ + + M++++  S++++I GY 
Sbjct: 296 QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 355

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G  ++A+ LF                               ++MQ +G++P+  ++SS
Sbjct: 356 QNGETQEALRLF-------------------------------KQMQLNGIKPDCFSLSS 384

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--KG 237
           + S     S+ + G+E+H + V+N  +    +   ++D YAK G +  A +V+D+   K 
Sbjct: 385 MLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKD 444

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF----------TAVLSACAH 287
           R+  +W +I++ YA  G   ++ + F EML + I+ D +T           TA++   + 
Sbjct: 445 RNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSK 504

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAK 344
            G + KA  +F+ M+G+     ++  +  M+   S+     EA     +MP K   P+  
Sbjct: 505 CGAITKARTVFDNMNGK-----NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEV 559

Query: 345 VWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
            + A+L   S +G VE G  +   +   + IE +   +Y  M +L  +AGR ++A    E
Sbjct: 560 TFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAK-AEHYTCMVDLLGRAGRLEDAKEFVE 618

Query: 402 QM 403
           +M
Sbjct: 619 KM 620



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 149/299 (49%), Gaps = 30/299 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ +WN+MI  Y++   Y E   +F  ML   V  PD  T  S L+ CG       
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVC-PDNFTFASALRVCGALRSRDG 193

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+ +I    K D ++ NALI MYAKC   +    + DEM ++++V++++IIS    
Sbjct: 194 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 253

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    A+ LF  M+                                 G++P+  T +++
Sbjct: 254 FGHFNDALVLFLRMQE-----------------------------SEDGIQPDQFTFTTL 284

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +L ++  N   G++IH + ++    +NI V T ++  Y++ G L+ A+ +F+R   R+ 
Sbjct: 285 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 344

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W ++I  Y  +G+  +A+ LF +M  NGI+PD  + +++LS+C       K  ++ N
Sbjct: 345 YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN 403



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 166/376 (44%), Gaps = 44/376 (11%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD---YARALLDEM 103
           S++Q C  S+    G  +H  +I +    D ++   ++ +YA+ G LD   YAR L +EM
Sbjct: 76  SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEM 135

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            +++                               L+ WN +I    + + +     +  
Sbjct: 136 PERN-------------------------------LTAWNTMILAYARVDDYMEAWGIFD 164

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            M   GV P+  T +S   +     +  GGK++H   +   +  + +V  A+ID YAK  
Sbjct: 165 RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCD 224

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAV 281
                 +VFD    R+ + W +IISA A  G  + A+ LF  M    +GIQPD  TFT +
Sbjct: 225 DEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTL 284

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           L+ CA+    ++   I +A   +  I  ++     +V + S   R++ A E  ++M  + 
Sbjct: 285 LTLCANQRNDNQGRQI-HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER- 342

Query: 342 SAKVWGALLYGASISGDVE--LGKFVCDHLFEIEPENTGNYIIMANLY----SQAGRWDE 395
           +A  W +++ G   +G+ +  L  F    L  I+P+      ++++      SQ GR   
Sbjct: 343 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELH 402

Query: 396 ADRVREQMKESGLAKI 411
              VR  M+E G+ ++
Sbjct: 403 NFIVRNTMEEEGILQV 418



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           AS V P  +  SS+       ++ + GK IH   + N Y+ + Y+ T I+  YA++G L 
Sbjct: 66  ASDVNP--LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 227 G---AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               A+++F+    R+L  W  +I AYA   D  +A  +F+ ML  G+ PD  TF + L 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALR 183

Query: 284 AC 285
            C
Sbjct: 184 VC 185


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 257/456 (56%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+ SW S+IAGY+Q    +E   L    +     +P+G T  S+L+A G S+    
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGL-LLGMLRGRFKPNGFTFASLLKAAGASASSGI 59

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++     D+++ +AL+ MYA+CG +D A A+ D++  K+ VS          
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS---------- 109

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E  L +  EMQ +G      T SS+
Sbjct: 110 ---------------------WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSV 148

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+    + +V   I+D YAK+G +  A++VFD    + L
Sbjct: 149 FSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDL 208

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++A+A +G   +AV+ F EM   G+  + +TF ++L+AC+H GLV +    F+ 
Sbjct: 209 VTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDM 268

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ ++P ++HY  +V +L RA  +++A  F+ KMP+KP+A VWGALL    +  + +
Sbjct: 269 MK-EHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAK 327

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F  DH+FE++P++TG  +++ N+Y+  G+WD A RVR+ MK +G+ K P  SW+E  
Sbjct: 328 IGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIE 387

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  +SE+IY   E +   +R+ GYV
Sbjct: 388 NSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 423


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 261/471 (55%), Gaps = 23/471 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R +  WN+MI GY+Q G  EE   LF  M       P   T+  VL AC +S        
Sbjct: 349 RQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEA 408

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +V++  +  + ++ NAL+ MYA+ G +D AR +   +  +D VS++ +I+G +V G 
Sbjct: 409 MHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGH 468

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A  L   M+ P  S  ++  +                E +A    PN +T+ ++   
Sbjct: 469 AAEAFQLVTEMQLPSPSPSSSSTT---------------EEGEAHRCMPNNITLMTLLPG 513

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  +    GKEIHGYAV++  + +I V +A++D YAK G L  ++ VFDR   R++I W
Sbjct: 514 CAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITW 573

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
             +I AY  HG   +AV+LF+EM   G   P+ VTF A L+AC+HSGLVD+  ++F+ M 
Sbjct: 574 NVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGME 633

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVEL 361
             +G++P+ + +AC+V VL RA R+ EA   ++ M P +     W +LL    +  +VEL
Sbjct: 634 RDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVEL 693

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+   + LFE+EP    +Y+++ N+YS AG WD++  VR +M+  G+AK PG SWIE  G
Sbjct: 694 GEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDG 753

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESA 466
            +  F+A ++S   S +++  ++ L   MR EGY      VL D  E+E A
Sbjct: 754 AIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKA 804



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 152/342 (44%), Gaps = 46/342 (13%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSDIVF 60
           RD VS+NS+I+       +E      R+ML          T+VSVL AC           
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E H F ++                          R  LDE   ++   ++A++S Y  
Sbjct: 191 GREAHAFALK--------------------------RGFLDE--GRERFPFNALLSMYAR 222

Query: 121 HGFVEKAMDLFQVMK---RPG---LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
            G V+ A  LF+       PG   + TWN +IS LVQ  R    ++++ +M + GVRP+ 
Sbjct: 223 LGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDG 282

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           VT +S     S    L  G+E+H   +K+     N +VA+A++D YA    +  A+RVFD
Sbjct: 283 VTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFD 342

Query: 234 RF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHS-G 289
                 R L +W A+I  YA  G   +A+ LF+ M    G  P   T + VL ACA S G
Sbjct: 343 MVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEG 402

Query: 290 LVDK----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
              K     + +   M+G   +Q ++      +G +  ARRI
Sbjct: 403 FAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRI 444



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 46/221 (20%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           NAL+  YA+CG LD A AL    +   +D VSY+++IS          A+ LF+      
Sbjct: 104 NALLTAYARCGDLDAALALFAATATELRDAVSYNSLIS----------ALCLFR------ 147

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP-NAVTISSIFSLFSHFSNLKG---GK 194
              W             E  LD +R+M A G    ++ T+ S+    SH     G   G+
Sbjct: 148 --QW-------------ERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGR 192

Query: 195 EIHGYAVKNRY---DRNIYVATAIIDTYAKTGFLHGAQRVFDRFK------GRSLIIWTA 245
           E H +A+K  +    R  +   A++  YA+ G +  AQ +F          G  ++ W  
Sbjct: 193 EAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNT 252

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +IS     G  ++AV +  +M++ G++PD VTF + L AC+
Sbjct: 253 MISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACS 293



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++++WN +I  Y   G  +E  ALF EM       P+ VT ++ L AC  S  +  
Sbjct: 565 LPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDR 624

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAII 115
           G+E+ + +   H      DL  C  ++ +  + G LD A +++  M   ++   ++S+++
Sbjct: 625 GLELFHGMERDHGVKPTPDLHAC--VVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLL 682

Query: 116 SGYMVHGFVE 125
               +H  VE
Sbjct: 683 GACRLHRNVE 692


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 258/473 (54%), Gaps = 18/473 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  W  +I  ++    +    + + +ML  P+ +P+  T+ S+L+AC           V
Sbjct: 85  NVFLWTHIINAHAHFDLFHHALSYYSQMLTHPI-QPNAFTLSSLLKACTLHP----ARAV 139

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+  I+  +   L++   L+  YA+ G +  A+ L D M ++  VSY+A+++ Y  HG +
Sbjct: 140 HSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGML 199

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-------GVRPNAVTI 177
            +A  LF+ M    +  WN +I G  Q+      L   R+M           VRPN +T+
Sbjct: 200 PEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITV 259

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            ++ S       L+ GK +H Y   N    N+ V TA++D Y K G L  A++VFD  +G
Sbjct: 260 VAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEG 319

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + ++ W ++I  Y  HG + +A+ LF+EM   G++P  +TF AVL+ACAH+GLV K W++
Sbjct: 320 KDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEV 379

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F++M   YG++P VEHY CMV +L RA R+ EA + V  M V+P   +WG LL+   I  
Sbjct: 380 FDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHS 439

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +V LG+ + + L      ++G Y++++N+Y+ A  W    +VR  MK SG+ K PG S I
Sbjct: 440 NVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSI 499

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           E    +  FVA D    +S+ IY +LE++ G ++E  Y      VL D  E+E
Sbjct: 500 EVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQE 552



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 137/286 (47%), Gaps = 53/286 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV------LRPDGVTVVSVLQACGQ 54
           M  +D+V WN MI GY+Q G   E    FR+M+          +RP+ +TVV+VL +CGQ
Sbjct: 209 MGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQ 268

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
              +  G  VH++V  + IK+++ +  AL+ MY KCGSL+ AR + D M  KD V+++++
Sbjct: 269 VGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSM 328

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I GY +HGF ++A+ LF                                EM   GV+P+ 
Sbjct: 329 IMGYGIHGFSDEALQLFH-------------------------------EMCCIGVKPSD 357

Query: 175 VTISSIFSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           +T  ++ +  +H   +  G E+      GY ++ + +        +++   + G +   Q
Sbjct: 358 ITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEH----YGCMVNLLGRAGRM---Q 410

Query: 230 RVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
             +D  +   +    ++W  ++ A   H + S    +   +++NG+
Sbjct: 411 EAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGL 456



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V+WNSMI GY   GF +E   LF EM    V +P  +T V+VL AC  +  +  
Sbjct: 317 MEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGV-KPSDITFVAVLTACAHAGLVSK 375

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G EV + + + +    K++ + C  ++ +  + G +  A  L+  M  + D V +  ++ 
Sbjct: 376 GWEVFDSMKDGYGMEPKVEHYGC--MVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLW 433

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLST 141
              +H  V    ++ +++   GL++
Sbjct: 434 ACRIHSNVSLGEEIAEILVSNGLAS 458



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           +IH   ++     +  +   +  +YA  G LH +  +F R    ++ +WT II+A+A   
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
               A+S +++ML + IQP+  T +++L AC 
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACT 132


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 273/478 (57%), Gaps = 18/478 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN +I+ Y+  G ++E   LF EM  +     + +T  ++   C Q+ +   
Sbjct: 204 MPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGA-EVNIITWNTIAGGCVQTRNFKG 262

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYA-------KCGSLDYARALLDEMSDKDEVSYSA 113
            +E+ + +    I +D      +IG+ A       K G++ +A A+       D V  +A
Sbjct: 263 ALELLSQMRRCDIDLD--PVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVR-NA 319

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I+ Y     +  A  LF+ +K   L+TWN+++SG    +R E    L REM  SG+ PN
Sbjct: 320 LITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPN 379

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            VTI+SI    +  +NL+ GKE H Y ++   ++  + +  ++++ YA++G +  A+RVF
Sbjct: 380 YVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVF 439

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D  + R  + +T++I+ Y   G+   A+ LF+EM+ + I+PD VT  AVLSAC+HSGLV 
Sbjct: 440 DSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVT 499

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +   +F  MS  YGI P+VEH++CMV +  RA  +++A + ++ MP +P+  +W  L+  
Sbjct: 500 EGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGA 559

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             I G+ E+G++  + L E++PEN G Y+++AN+++ AGRW +   VR  M++ G+ K P
Sbjct: 560 CRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAP 619

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL------LDEVEEE 464
           G +W++   G   FV  DTS   S  +Y +LE L  LM++ GYV        DEV EE
Sbjct: 620 GCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDLMKDAGYVAGENFSSEDEVLEE 677



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 210/409 (51%), Gaps = 13/409 (3%)

Query: 5   DIVS---WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           DIV+   WN +I+ Y   G + E  + +REM++  V RPD  T  SVL+ACG+  D+ FG
Sbjct: 103 DIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGV-RPDNFTYPSVLKACGEKLDLDFG 161

Query: 62  MEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            EVH  +  ++  + +L++ N+L+ MY K G LD AR L ++M ++D VS++ IIS Y  
Sbjct: 162 REVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYAS 221

Query: 121 HGFVEKAMDLFQVMKRPG----LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            G  ++A +LF+ M+  G    + TWN +  G VQ    +  L+L+ +M+   +  + V 
Sbjct: 222 RGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVA 281

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +       SH   +K G  IH  A+++ +D    V  A+I  Y++   L  A  +F   K
Sbjct: 282 MIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIK 341

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +SL  W +++S Y     + +A  LF EML +GI+P+ VT  ++L  CA    + +  +
Sbjct: 342 TKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKE 401

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
               +  + G +  +  +  +V + +R+ ++  A      +  +     + +L+ G  I 
Sbjct: 402 FHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKV-TYTSLIAGYGIQ 460

Query: 357 GDVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           G+ +    + D + +  I+P+      +++   S +G   E + + E+M
Sbjct: 461 GEGKTALKLFDEMIKHRIKPDQVTMVAVLSAC-SHSGLVTEGNVLFEKM 508



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 117/261 (44%), Gaps = 38/261 (14%)

Query: 164 EMQASGVRPNAV--TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
           ++ AS    +A+  +ISS+    ++  +L  GK++H + +   ++ ++ +   ++  Y+ 
Sbjct: 29  KLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSS 88

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
              L  A  +       + + W  +IS+Y  +G   +A+S + EM++ G++PD  T+ +V
Sbjct: 89  FSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSV 148

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           L AC     +D   ++  +++  YG + ++  +  +V +  +   +  A    ++MP + 
Sbjct: 149 LKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPER- 207

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
            A  W                                   I++N Y+  G W EA  + E
Sbjct: 208 DAVSWNG---------------------------------IISN-YASRGLWKEAFELFE 233

Query: 402 QMKESGLAKIPGRSWIECSGG 422
           +M+ +G A++   +W   +GG
Sbjct: 234 EMRLAG-AEVNIITWNTIAGG 253


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 247/456 (54%), Gaps = 36/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW  +I+GY + G ++E   LF +M     + P+  T VSVL ACG+   +  
Sbjct: 166 MLVRDVVSWTGLISGYVRTGLFDEAINLFLKM----DVVPNVATFVSVLVACGRMGYLSM 221

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  V +    + L + NAL+ MY KC  L  AR L DE+ D+D VS          
Sbjct: 222 GKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVS---------- 271

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++ISGLVQ  + +  L+L  +MQ SGV P+ + ++S+
Sbjct: 272 ---------------------WTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSV 310

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+ +  Y  +   + +I++ TA++D YAK G +  A  +F+    R++
Sbjct: 311 LSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNI 370

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A++   A HG   +A+  F  M+  GI+P+ VTF A+L+AC HSGLV +    F  
Sbjct: 371 FTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQ 430

Query: 301 MSGQ-YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           M  Q +   P +EHY CM+ +L RA  + EA +F+  MP+ P   +WGALL     +G+V
Sbjct: 431 MISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNV 490

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL + +  HL E++ +++G Y++++N+Y+   RWD+  RVR  MK+ G+ K PG S IE 
Sbjct: 491 ELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEV 550

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            G    F+  DT+  ++E I+++L  L   +  EG+
Sbjct: 551 DGEAHEFLVGDTNHSRNEDIHILLNILANQVYLEGH 586



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 155/351 (44%), Gaps = 37/351 (10%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + +N++IA Y+     +    ++  ++ +  + PD  T   VL+AC +   +  G +VH 
Sbjct: 71  LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFV-PDMYTFPVVLKACTKFLGVQEGEQVHG 129

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
             ++     DL++ N+L+  Y+ CG    A  + DEM  +D VS                
Sbjct: 130 VAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVS---------------- 173

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                          W  +ISG V+    +  ++L  +M    V PN  T  S+      
Sbjct: 174 ---------------WTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVACGR 215

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L  GK +HG   K  +   + V  A++D Y K   L  A+++FD    R ++ WT+I
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSI 275

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           IS          ++ LF +M  +G++PD +  T+VLSACA  G +D    +   +  Q G
Sbjct: 276 ISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ-G 334

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           I+  +     +V + ++   I  A    + +P + +   W ALL G ++ G
Sbjct: 335 IEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR-NIFTWNALLGGLAMHG 384



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 5/185 (2%)

Query: 107 DEVSYSAIISGYMVH-GFVEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           DE   S +   +  H GFV+ A D   Q     G   +N +I+    +   +A   +   
Sbjct: 36  DEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGR 95

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           +  +G  P+  T   +    + F  ++ G+++HG AVK  +  ++YV  +++  Y+  G 
Sbjct: 96  IVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGK 155

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
             GA RVFD    R ++ WT +IS Y   G   +A++LF +M    + P+  TF +VL A
Sbjct: 156 WGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVA 212

Query: 285 CAHSG 289
           C   G
Sbjct: 213 CGRMG 217


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 253/458 (55%), Gaps = 35/458 (7%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           ++++ML+  ++ PD  T+  VL+AC +S  +  G EVH   I+  +  D+++ N L+ MY
Sbjct: 127 VYKQMLSKGIV-PDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMY 185

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDL----------------- 130
           A C  +  AR + D    +D VS++ +I GY+  GF  + + L                 
Sbjct: 186 AVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNA 245

Query: 131 -----------------FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
                            FQ M    + +WN++ISGL Q  + +  L + R+MQ  GV+P+
Sbjct: 246 LVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPD 305

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            VT+ ++ +  ++   L+ GK +H Y  +N+   + ++  A++D YAK G +  A  VF 
Sbjct: 306 DVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQ 365

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               + +  +TA+I   A HG   KA+ LF+EM   GI+PD VTF  VL+AC+H GLV++
Sbjct: 366 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 425

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
               F  MS  Y ++P +EHY CMV +L RA  I+EA EF+  MP++P A V GALL   
Sbjct: 426 GRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGAC 485

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I G VELG+ V   + +IEP   G Y++M+N+YS A RW +A ++R+ MKE  L K PG
Sbjct: 486 KIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPG 545

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            S IE  G +  F   D S  K ++IY +L+ ++  ++
Sbjct: 546 CSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWNSMI+G +Q G ++E   +FR+M    V +PD VT+V+VL +C     +  
Sbjct: 266 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV-KPDDVTLVAVLNSCANLGVLEL 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++  + I+ D +I NAL+ MYAKCGS+D A  +   M+ KD  SY+A+I G  +
Sbjct: 325 GKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAM 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG   KA+DLF  M + G+        G++    H  +++
Sbjct: 385 HGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVE 424



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 139/285 (48%), Gaps = 17/285 (5%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV--REMQASGVRPNAVTISSIFSLF 184
           A+ L   ++ P L  +NA+I GL  +N ++++  LV  ++M + G+ P+  TI  +    
Sbjct: 92  ALSLLAQLRTPNLPLYNAIIRGLATSN-NDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 150

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    ++ G+E+HG A+K     ++YV+  ++  YA    +  A++VFD    R L+ WT
Sbjct: 151 AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 210

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  Y   G A + V L+  + N+ +  D     A++      G  + A  +F  M  +
Sbjct: 211 TMIQGYVKMGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK 269

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVEL 361
                +V  +  M+  L++  +  E+     KM    VKP      A+L   +  G +EL
Sbjct: 270 -----NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLEL 324

Query: 362 GKFVCDHL--FEIEPEN-TGNYIIMANLYSQAGRWDEADRVREQM 403
           GK+V  +L   +I  +   GN ++  ++Y++ G  D+A  V + M
Sbjct: 325 GKWVHAYLDRNQIRADGFIGNALV--DMYAKCGSIDQACWVFQAM 367


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 169/472 (35%), Positives = 265/472 (56%), Gaps = 43/472 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y++   LF+EM+ + V +PD  T+ +V+ AC QS  I  G +
Sbjct: 170 KDVVSWNAMISGYAETGNYKKALELFKEMMKTNV-KPDESTMATVVSACAQSGSIELGRQ 228

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +     +L I NALI +Y+KCG ++ A  LL+ +S+KD +              
Sbjct: 229 VHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVI-------------- 274

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            +WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 275 -----------------SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 317

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVA----TAIIDTYAKTGFLHGAQRVFDRFK-GR 238
            +H   +  G+ IH Y  K      +  A    T++ID YAK G +  A +V D     R
Sbjct: 318 CAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNR 377

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           SL  W A+I  +A HG A+ A  +F+ M  NGI+PD +TF  +LSAC+HSG++D   +IF
Sbjct: 378 SLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIF 437

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   Y I P +EHY CM+ +L  +    EA E ++ MP++P   +W +LL    I G+
Sbjct: 438 RSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 497

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL-AKIPGRSWI 417
           +ELG+     L +IEPEN G+Y++++N+Y+ AG+W+E  ++R  + + G+  K+PG S I
Sbjct: 498 LELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSI 557

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 558 EIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 609



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 208/412 (50%), Gaps = 27/412 (6%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN M  G++          L+  M++  +L P+  T   +L++C +S     G ++H  V
Sbjct: 43  WNIMFRGHALSSDPVSALKLYVVMISLGLL-PNFFTFPFLLKSCAKSKTFKEGQQIHGHV 101

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++    +DL++  +LI MYA+ G L+ A+ + D  S +D VSY+A+I+GY   G++E A 
Sbjct: 102 LKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQ 161

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F  +    + +WNA+ISG  +   ++  L+L +EM  + V+P+  T++++ S  +   
Sbjct: 162 KMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSG 221

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +++ G+++H +   + +  N+ +  A+ID Y+K G +  A  + +    + +I W  +I 
Sbjct: 222 SIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIG 281

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-------------KAW 295
            Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D             K  
Sbjct: 282 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGV 341

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            + NA S +  +   ++ YA   G +  A ++S+++ F        S   W A+++G ++
Sbjct: 342 VVTNASSLRTSL---IDMYA-KCGDIDAAPQVSDSSAF------NRSLSTWNAMIFGFAM 391

Query: 356 SGDVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            G       +   + +  IEP++   ++ + +  S +G  D    +   M++
Sbjct: 392 HGRANAAFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRNIFRSMRQ 442



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 33/257 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ +  P    WN +  G   ++   + L L   M + G+ PN  T   +    + 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G++IHG+ +K  +D ++YV T++I  YA+ G L  AQ+VFDR   R ++ +TA+
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 247 ISAYAAH-------------------------------GDASKAVSLFNEMLNNGIQPDP 275
           I+ YA+                                G+  KA+ LF EM+   ++PD 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            T   V+SACA SG ++    + + ++  +G   +++    ++ + S+   +  A E + 
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWIN-DHGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 336 KMPVKPSAKVWGALLYG 352
            +  K     W  L+ G
Sbjct: 267 GLSNK-DVISWNTLIGG 282



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 15/208 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN++I GY+    Y+E   LF+EML S    P+ VT++S+L AC     I  
Sbjct: 268 LSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDI 326

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMS-DKDEVSYSA 113
           G  +H + I+  +K  + + NA      LI MYAKCG +D A  + D  + ++   +++A
Sbjct: 327 GRWIHVY-IDKKLK-GVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNA 384

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-----QAS 168
           +I G+ +HG    A D+F  M++ G+   +    GL+    H  +LDL R +     Q  
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDY 444

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEI 196
            + P       +  L  H    K  +E+
Sbjct: 445 NITPKLEHYGCMIDLLGHSGLFKEAEEM 472


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 263/471 (55%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSW +MI+ YSQ G   E  ++F EM+ S   +P+  T  +VL +C ++S +  
Sbjct: 112 MPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG-KPNEFTFATVLTSCIRASGLAL 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +++ +    +++ ++L+ MYAK G                             
Sbjct: 171 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQ---------------------------- 202

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +E+A ++F+ +    + +  A+I+G  Q    E  L++ + +Q+ G+RPN VT +S+
Sbjct: 203 ---IEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASL 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK+ H + ++        +  ++ID Y+K G L  AQR+FD    R+ 
Sbjct: 260 LTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTA 319

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W A++  Y+ HG   + + LF  M +   ++PD VT  AVLS C+H  + D    I++
Sbjct: 320 ISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYD 379

Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            M +G+YGI+P  EHY C+V +L RA RI EA EF+ +MP KP+A V G+LL    +   
Sbjct: 380 GMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLS 439

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++G++V   L EIEPEN GNY+I++NLY+ AGRW++ + VR  M +  + K PGRSWI+
Sbjct: 440 VDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQ 499

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               L  F A D +  + E++   ++ +   M++ GYV     +L +V+EE
Sbjct: 500 HEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEE 550



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 159/330 (48%), Gaps = 45/330 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L AC     +  G  VH  +I++      ++   L+  Y KC  L+ AR +LDEM +K
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 115

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS++A+IS Y   G   +A+ +F                                EM 
Sbjct: 116 NVVSWTAMISRYSQTGHSSEALSVFA-------------------------------EMM 144

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            S  +PN  T +++ +     S L  GK+IHG  VK  YD +I+V ++++D YAK G + 
Sbjct: 145 RSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIE 204

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ +F+    R ++  TAII+ YA  G   +A+ +F  + + G++P+ VT+ ++L+A +
Sbjct: 205 EAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALS 264

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----MVGVLSRARRISEATEFVSKMPVKPS 342
              L+D         +  + ++  +  YA     ++ + S+   +S A      MP + +
Sbjct: 265 GLALLDHG-----KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER-T 318

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEI 372
           A  W A+L G S  G   LG+ V + LF +
Sbjct: 319 AISWNAMLVGYSKHG---LGREVLE-LFRL 344



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 129 DLFQVMKRPGLSTWNAV------ISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIF 181
           +L +++ R   S+ N+V      IS L  N R  EA+L++V      G       +++  
Sbjct: 3   NLMRLIHRSFSSSPNSVLQTFRPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNACL 62

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +    L+ G+ +H + +K RY    Y+ T ++  Y K   L  A++V D    ++++
Sbjct: 63  DKRA----LREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVV 118

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGL 290
            WTA+IS Y+  G +S+A+S+F EM+ +  +P+  TF  VL++C   SGL
Sbjct: 119 SWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGL 168


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 266/471 (56%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW +MI+ YSQ GF  E   LF EML S    P+  T  ++L +C  S     
Sbjct: 123 MPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDT-EPNHFTFATILTSCYGSLGFET 181

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  I+ + +  +++ ++L+ MYAK G +  A  +   + ++D V+ +AIIS    
Sbjct: 182 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIIS---- 237

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G+ +  +D                          E  L L R++Q  G+  N+VT +S+
Sbjct: 238 -GYAQMGLD--------------------------EEALKLFRQLQIEGMNSNSVTYASV 270

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK++H + +++     + +  ++ID Y+K G +  A+R+FD    R+ 
Sbjct: 271 LTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTC 330

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIF- 298
           I W A++  Y+ HG A + + LF  M   N ++PD +T+ AVLS C+H  L D   +IF 
Sbjct: 331 ISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFY 390

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N ++G+ GI+P + HY C+V +L RA R+ EA +F+ KMP  P+A +WG+LL    +  D
Sbjct: 391 NMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSD 450

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+G  V   L E+EPEN GNY+I++NLY+ AG+W++   +R+ M+E  + K PGRSW+E
Sbjct: 451 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 510

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F A D +  + E++   ++ L    +E+GYV     +L +V+EE
Sbjct: 511 LDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEE 561



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 37/313 (11%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+L  C     I  G  VH  +I++     +++   LI +Y KC  L  AR + DEM  +
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS++A+IS Y   GF  +A++LF                                EM 
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFV-------------------------------EML 155

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            S   PN  T ++I +        + G++IH  A+K  Y+ +++V ++++D YAK+G + 
Sbjct: 156 RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRIC 215

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A  VF     R ++  TAIIS YA  G   +A+ LF ++   G+  + VT+ +VL+A +
Sbjct: 216 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 275

Query: 287 HSGLVDKAWDIFNAM--SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
               ++    + + +  SGQY     V     ++ + S+   +  A      MP +    
Sbjct: 276 GLAALNHGKQVHSHVLRSGQYSY---VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS 332

Query: 345 VWGALLYGASISG 357
            W A+L G S  G
Sbjct: 333 -WNAMLVGYSKHG 344


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 174/472 (36%), Positives = 255/472 (54%), Gaps = 42/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+VSWNS+IA Y Q       +  F +M LN   L PD +T+VS+     QS D  
Sbjct: 334 MFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG--LEPDLLTLVSLASIAAQSRDYK 391

Query: 60  FGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
               VH F++     M+ + I NA++ MYAK G +D A  + + +  KD VS        
Sbjct: 392 NSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVS-------- 443

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTI 177
                                  WN +ISG  QN      +++ R M+    ++ N  T 
Sbjct: 444 -----------------------WNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTW 480

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            SI + ++H   L+ G  IHG+ +K     +++V T +ID Y K G L  A  +F +   
Sbjct: 481 VSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPR 540

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
            S + W AIIS +  HG   KA+ LF EM + G++PD VTF ++LSAC+HSGLVD+    
Sbjct: 541 ESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWF 600

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F+ M  +YGI+PS++HY CMV +L RA  +  A +F+  MP+ P A +WGALL    I G
Sbjct: 601 FHLMQ-EYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHG 659

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++ELGKF  D LFE++ EN G Y++++N+Y+  G+W+  D+VR   +E GL K PG S I
Sbjct: 660 NIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSI 719

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E +  +  F   + S  K ++IY  L  L   M+  GY+     +L +VEE+
Sbjct: 720 EVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEED 771



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 197/412 (47%), Gaps = 41/412 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+ +WNSMI+ Y + G + E    F ++L     + D  T   VL+AC     +V 
Sbjct: 134 IQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVD 190

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +V +   + D+++  +LI MY++                               
Sbjct: 191 GRKIHCWVFKLGFQWDVFVAASLIHMYSR------------------------------- 219

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GFV  A  LF  M    + +WNA+ISGL+QN      LD++ EM+  G+  ++VT++SI
Sbjct: 220 FGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASI 279

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +   ++     IH Y +K+  +  ++V+ A+I+ YAK G L  AQ+VF +   R +
Sbjct: 280 LPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDV 339

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +II+AY  + D   A   F +M  NG++PD +T  ++ S  A S     +  +   
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF 399

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--- 357
           +  +  +  +V     ++ + ++   I  A +  + +PVK     W  L+ G + +G   
Sbjct: 400 IMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVS-WNTLISGYTQNGLAS 458

Query: 358 -DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             +E+ + + +   EI+  N G ++ +   Y+  G   +  R+   + ++ L
Sbjct: 459 EAIEVYRMM-EECREIKL-NQGTWVSILAAYAHVGALQQGMRIHGHLIKTNL 508



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 195/412 (47%), Gaps = 39/412 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN+MI+G  Q G   +   +  EM    +   D VTV S+L  C Q  DI  
Sbjct: 233 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-NMDSVTVASILPVCAQLGDIST 291

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H +VI+  ++ +L++ NALI MYAK G+L  A+ +  +M  +D VS          
Sbjct: 292 ATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVS---------- 341

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+   QN+          +MQ +G+ P+ +T+ S+
Sbjct: 342 ---------------------WNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S+ +   + K  + +HG+ ++  +    + +  A++D YAK G +  A +VF+    + 
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKD 440

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++ W  +IS Y  +G AS+A+ ++  M     I+ +  T+ ++L+A AH G + +   I 
Sbjct: 441 VVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIH 500

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             +  +  +   V    C++ +  +  R+ +A     ++P + S+  W A++    I G 
Sbjct: 501 GHLI-KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGH 558

Query: 359 VELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            E    +   + +  ++P++   +I + +  S +G  DE       M+E G+
Sbjct: 559 GEKALKLFREMQDEGVKPDHV-TFISLLSACSHSGLVDEGKWFFHLMQEYGI 609



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 36/248 (14%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+  +C ++   +    +H  ++ S      +I   L+ +YA  G +  +R   D++  K
Sbjct: 81  SLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRK 137

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D  +++++IS Y+ +G   +A+D F                           L LV + Q
Sbjct: 138 DVYTWNSMISAYVRNGHFREAIDCFY-------------------------QLLLVTKFQ 172

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           A           +   +      L  G++IH +  K  +  +++VA ++I  Y++ GF+ 
Sbjct: 173 AD--------FYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVG 224

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ +FD    R +  W A+IS    +G+A++A+ + +EM   GI  D VT  ++L  CA
Sbjct: 225 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCA 284

Query: 287 HSGLVDKA 294
             G +  A
Sbjct: 285 QLGDISTA 292



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 14/193 (7%)

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           SLF   +     K +H   V +   ++ +++  +++ YA  G +  ++  FD+ + + + 
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVY 140

Query: 242 IWTAIISAYAAHGDASKAVSLFNE-MLNNGIQPDPVTFTAVLSACAHSGLVD----KAWD 296
            W ++ISAY  +G   +A+  F + +L    Q D  TF  VL AC    LVD      W 
Sbjct: 141 TWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC--QTLVDGRKIHCW- 197

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F     + G Q  V   A ++ + SR   +  A      MP +     W A++ G   +
Sbjct: 198 VF-----KLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS-WNAMISGLIQN 251

Query: 357 GDVELGKFVCDHL 369
           G+      V D +
Sbjct: 252 GNAAQALDVLDEM 264


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 254/466 (54%), Gaps = 38/466 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V+WNS+I GY+Q G+Y+E    F+ M      +PD VT V +L    Q +DI  G  
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKMER--KPDSVTFVLLLSIFSQLADINQGRG 443

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI+   + +L I N+L+ +YAKCG +D    +   MS  D +S             
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIIS------------- 490

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN VI+  V  +       ++ EM+  G+ P+  T+  I  +
Sbjct: 491 ------------------WNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  +  + GKEIHGY  K+ ++ N+ +  A+I+ Y+K G L    +VF   K + ++ W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+ISA+  +G+  KA+  F +M  +G+ PD V F A + AC+HSG+V +    F+ M  
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y ++P +EHYAC+V +L+R+  +++A EF+  MP+KP A +WGALL      G+  + +
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V   + E+  ++TG Y++++N+Y+  G+WD+   VR  MK  GL K PG SWIE    +
Sbjct: 713 RVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRV 772

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             F   D S ++ +++  +LE L+ LM +EGYV      L +VEE+
Sbjct: 773 YVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEED 818



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 176/382 (46%), Gaps = 37/382 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WNS+I   +  G + +    + EM     L+PD  T  SV+ +C +  D+  G  VH   
Sbjct: 89  WNSIIRALTHNGLFTQALGYYTEMREKK-LQPDAFTFPSVINSCARILDLELGCIVHEHA 147

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +E   + DL+I NALI MY++   LD AR + +EMS++D VS++++ISGY  +GF E A+
Sbjct: 148 MEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDAL 207

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           D++                                + + +G+ P+  T+SS+        
Sbjct: 208 DMYH-------------------------------KFRMTGMVPDCFTMSSVLLACGSLM 236

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            +K G  +HG   K     ++ +   ++  Y K   L  A+RVF +   +  + W  +I 
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA  G    +V LF +M+ +G  PD ++ T+ + AC  SG +     +   + G  G +
Sbjct: 297 GYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFE 354

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
                   ++ + ++   +  A E       K S   W +L+ G + SG  + G      
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSV-TWNSLINGYTQSGYYKEGLESFKM 413

Query: 369 L-FEIEPENTGNYIIMANLYSQ 389
           +  E +P++   ++++ +++SQ
Sbjct: 414 MKMERKPDSV-TFVLLLSIFSQ 434



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 34/283 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD VSWNS+I+GY   GF+E+   ++ +   + ++ PD  T+ SVL ACG    +  
Sbjct: 182 MSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKE 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH  + +  I  D+ I N L+ MY K   L  AR +  +M+ KD V+++ +I GY  
Sbjct: 241 GVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGY-- 298

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         Q  RHEA + L  +M   G  P+ ++I+S 
Sbjct: 299 -----------------------------AQLGRHEASVKLFMDM-IDGFVPDMLSITST 328

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +L+ GK +H Y + + ++ +      +ID YAK G L  AQ VFD  K +  
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           + W ++I+ Y   G   + +  F +M+    +PD VTF  +LS
Sbjct: 389 VTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLS 430



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 42/273 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN---SPVLRPDGVTVVSVLQACGQSSD 57
           MS  DI+SWN++IA       +++C   F +M+N   +  L PD  TV+ +L  C   + 
Sbjct: 483 MSAHDIISWNTVIASSVH---FDDCTVGF-QMINEMRTEGLMPDEATVLGILPMCSLLAV 538

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
              G E+H ++ +S  + ++ I NALI MY+KCGSL+    +   M +KD V+++A+IS 
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISA 598

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           + ++G  +KA+  FQ                               +M+ SGV P++V  
Sbjct: 599 FGMYGEGKKALKAFQ-------------------------------DMELSGVLPDSVAF 627

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRF 235
            +     SH   +K G       +K  Y+    +     ++D  A++G L  A+      
Sbjct: 628 IAFIFACSHSGMVKEGLRFFD-RMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSM 686

Query: 236 KGR-SLIIWTAIISAYAAHGDASKAVSLFNEML 267
             +    +W A++SA  A G+ + A  +  ++L
Sbjct: 687 PMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 254/466 (54%), Gaps = 38/466 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D V+WNS+I GY+Q G+Y+E    F+ M      +PD VT V +L    Q +DI  G  
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKMER--KPDSVTFVLLLSIFSQLADINQGRG 443

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI+   + +L I N+L+ +YAKCG +D    +   MS  D +S             
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIIS------------- 490

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN VI+  V  +       ++ EM+  G+ P+  T+  I  +
Sbjct: 491 ------------------WNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  +  + GKEIHGY  K+ ++ N+ +  A+I+ Y+K G L    +VF   K + ++ W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+ISA+  +G+  KA+  F +M  +G+ PD V F A + AC+HSG+V +    F+ M  
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y ++P +EHYAC+V +L+R+  +++A EF+  MP+KP A +WGALL      G+  + +
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V   + E+  ++TG Y++++N+Y+  G+WD+   VR  MK  GL K PG SWIE    +
Sbjct: 713 RVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRV 772

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             F   D S ++ +++  +LE L+ LM +EGYV      L +VEE+
Sbjct: 773 YVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEED 818



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 178/386 (46%), Gaps = 37/386 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WNS+I   +  G + +    + EM     L+PD  T  SV+ +C +  D+  G  V
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREKK-LQPDAFTFPSVINSCARILDLELGCIV 143

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   +E   + DL+I NALI MY++   LD AR + +EMS++D VS++++ISGY  +GF 
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFW 203

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A+D++                                + + +G+ P+  T+SS+    
Sbjct: 204 EDALDMYH-------------------------------KFRMTGMVPDCFTMSSVLLAC 232

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                +K G  +HG   K     ++ +   ++  Y K   L  A+RVF +   +  + W 
Sbjct: 233 GSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWN 292

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I  YA  G    +V LF +M+ +G  PD ++ T+ + AC  SG +     +   + G 
Sbjct: 293 TMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGS 351

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            G +        ++ + ++   +  A E       K S   W +L+ G + SG  + G  
Sbjct: 352 -GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSV-TWNSLINGYTQSGYYKEGLE 409

Query: 365 VCDHL-FEIEPENTGNYIIMANLYSQ 389
               +  E +P++   ++++ +++SQ
Sbjct: 410 SFKMMKMERKPDSV-TFVLLLSIFSQ 434



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 34/283 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD VSWNS+I+GY   GF+E+   ++ +   + ++ PD  T+ SVL ACG    +  
Sbjct: 182 MSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKE 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH  + +  I  D+ I N L+ MY K   L  AR +  +M+ KD V+++ +I GY  
Sbjct: 241 GVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGY-- 298

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         Q  RHEA + L  +M   G  P+ ++I+S 
Sbjct: 299 -----------------------------AQLGRHEASVKLFMDM-IDGFVPDMLSITST 328

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +L+ GK +H Y + + ++ +      +ID YAK G L  AQ VFD  K +  
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           + W ++I+ Y   G   + +  F +M+    +PD VTF  +LS
Sbjct: 389 VTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLS 430



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 42/273 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN---SPVLRPDGVTVVSVLQACGQSSD 57
           MS  DI+SWN++IA       +++C   F +M+N   +  L PD  TV+ +L  C   + 
Sbjct: 483 MSAHDIISWNTVIASSVH---FDDCTVGF-QMINEMRTEGLMPDEATVLGILPMCSLLAV 538

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
              G E+H ++ +S  + ++ I NALI MY+KCGSL+    +   M +KD V+++A+IS 
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISA 598

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           + ++G  +KA+  FQ                               +M+ SGV P++V  
Sbjct: 599 FGMYGEGKKALKAFQ-------------------------------DMELSGVLPDSVAF 627

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRF 235
            +     SH   +K G       +K  Y+    +     ++D  A++G L  A+      
Sbjct: 628 IAFIFACSHSGMVKEGLRFFD-RMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSM 686

Query: 236 KGR-SLIIWTAIISAYAAHGDASKAVSLFNEML 267
             +    +W A++SA  A G+ + A  +  ++L
Sbjct: 687 PMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719


>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 441

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 153/415 (36%), Positives = 243/415 (58%), Gaps = 4/415 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++S+   +  +   G + +   LF  M  S  L  D      VL++C        G  VH
Sbjct: 27  LLSFTKQLTSHVNRGLHHDALTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVH 86

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             +++     + ++ +AL+ MY KC  +  AR L DE+  ++ V ++A+IS Y     V 
Sbjct: 87  AHIVKMGFLSNPFVASALVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVR 146

Query: 126 KAMDLFQVMK-RPGLSTWNAVISGL--VQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            A+D+F  M+  P +ST+NA+I GL  V++   +A+     +M+  G++PN +T+ ++  
Sbjct: 147 DALDMFDAMEIEPNVSTFNALIYGLSGVKDGSIKAI-AFYWKMRQLGLKPNLITLLALLP 205

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                + L   +EIHGY+++N  DR+  + + ++D Y + G L  A  VF   K R ++ 
Sbjct: 206 ACVGIAALNLIREIHGYSIRNDIDRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVA 265

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W+++ISAYA HG+A  A+ +F +M    +QPD +TF AVL AC+H+GL D+A D F  M 
Sbjct: 266 WSSLISAYALHGEAKNALEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQ 325

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y +Q   +HY+C+V VLSRA R+ EA + + +MPVK +AK WGALL      G++EL 
Sbjct: 326 EGYRLQAVSDHYSCLVDVLSRAGRLYEAYKVIQEMPVKVTAKAWGALLGACRTYGEIELA 385

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + V   LFEIEP+N  NY+++A +Y+  GR+DEA R+R +MKE G+   PG SW+
Sbjct: 386 EIVGRALFEIEPDNPANYVLLARIYASVGRYDEAQRIRREMKERGVKVSPGSSWV 440



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 138/345 (40%), Gaps = 86/345 (24%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           + +R++V WN+MI+ Y+      +   +F  M   P                        
Sbjct: 124 IPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFNALIYGLSGVKDGSIKAIA 183

Query: 38  ---------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
                    L+P+ +T++++L AC   + +    E+H + I + I     + + L+  Y 
Sbjct: 184 FYWKMRQLGLKPNLITLLALLPACVGIAALNLIREIHGYSIRNDIDRHPQLGSGLLDAYG 243

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           +CG L  A  +   M ++D V++S++IS Y +HG  + A+++F                 
Sbjct: 244 RCGCLINASNVFCGMKERDVVAWSSLISAYALHGEAKNALEIF----------------- 286

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----------FSNLKGGKEIHG 198
                         R+M+ + V+P+ +T  ++    SH          F+ ++ G  +  
Sbjct: 287 --------------RQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQ- 331

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDAS 257
            AV + Y       + ++D  ++ G L+ A +V      + +   W A++ A   +G+  
Sbjct: 332 -AVSDHY-------SCLVDVLSRAGRLYEAYKVIQEMPVKVTAKAWGALLGACRTYGEIE 383

Query: 258 KAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAM 301
            A  +   +    I+PD P  +  +    A  G  D+A  I   M
Sbjct: 384 LAEIVGRALFE--IEPDNPANYVLLARIYASVGRYDEAQRIRREM 426


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 258/456 (56%), Gaps = 31/456 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++++W ++I+G +Q G++E    LF+EM++   + P+ +T +S+L AC     +  
Sbjct: 148 MGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKE 207

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +++  I+ DL I +AL+ MY+K G +  A  + +   + D VS + I++G+  
Sbjct: 208 GCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTH 267

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ +F                                +M   G+  +   +S +
Sbjct: 268 NGCEEEAIQIF-------------------------------LKMLKMGIEIDGNVVSVV 296

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +F   ++L+ G+++H + VK  +  N +V+  +I+ Y+K G L  + +VFDR + R+ 
Sbjct: 297 LGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNS 356

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+A+A HGDA KA+ L+ +M   G +P  VTF ++L AC+H+GLV K  +   +
Sbjct: 357 VTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKS 416

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +G+ P  EH+AC+V +L RA  +SEA  F+ K+P +P   VW ALL   S+ GD +
Sbjct: 417 MTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSK 476

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  +HLF   P++   Y+++AN+YS  G W E  R   +MKE G AK  G SWIE  
Sbjct: 477 IGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEID 536

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SF   D    ++E IY +L  L  LM +EGYV
Sbjct: 537 KKVHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYV 572



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 186/413 (45%), Gaps = 63/413 (15%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLW----ICNALIGMYAKCGSLDYARALLDEM 103
           +L  CG+  ++  G  +H  +I+S    + +    I N+LI MY +CG L  A  + DEM
Sbjct: 51  LLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEM 110

Query: 104 SDKDEVSYSAIISG-------YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
             +D +S++A+I G       Y   G V   M +F  M    + TW AVISGL QN  HE
Sbjct: 111 ITRDTISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHE 170

Query: 157 AVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
             L L +EM + G V PN++T  S+ +  S    LK G +IHG  +K     ++ + +A+
Sbjct: 171 HSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSAL 230

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD- 274
           +D Y+K+G +  A ++F+  +   ++  T I++ +  +G   +A+ +F +ML  GI+ D 
Sbjct: 231 MDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDG 290

Query: 275 ----------------------------------PVTFTAVLSACAHSGLVDKAWDIFNA 300
                                             P     +++  +  G +D++  +F+ 
Sbjct: 291 NVVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDR 350

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISG 357
           M  +  +      +  M+   +R     +A +    M +   KP+   + +LL+  S +G
Sbjct: 351 MRERNSVT-----WNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAG 405

Query: 358 DVELG-----KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            V+ G         DH      E   ++  + ++  +AG   EA    E++ E
Sbjct: 406 LVKKGMEFLKSMTKDHGMNPRSE---HHACVVDMLGRAGMLSEARNFIEKLPE 455


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 267/465 (57%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ V+W  +IAG+ Q G + E   LF +M  + ++  D   + +++  C    D+  
Sbjct: 331 LHDRNNVAWTVLIAGFLQHGCFTESVELFNQM-RAELMTLDQFALATLISGCCSRMDLCL 389

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI MYAKC +L  A ++   M++KD VS++++I+ +  
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISS 179
            G + KA + F  M    + TWNA++   +Q+   E  L +   M +   VRP+ VT  +
Sbjct: 450 VGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G  VK     +  VA A+I  Y+K G +  A++VFD    + 
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I+ Y+ HG   +A+ +F+++L  G +PD +++ AVLS C+HSGLV +    F+
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFD 629

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   + I P +EH++CMV +L RA  ++EA + + +MP+KP+A+VWGALL    I G+ 
Sbjct: 630 MMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNN 689

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    H+FE++  ++G+Y++MA +Y+ AG+ D++ ++R+ M++ G+ K PG SW+E 
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
           +  +  F A D S  +   I   L+ L+  +   GYV  D    E
Sbjct: 750 NNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDSPRSE 794



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 150/286 (52%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN++++GY Q   Y      F  M  S    P+  T    +++CG   +   
Sbjct: 97  MPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++   V +   + D  +  AL+ M+ +CG++D A  L   + +      ++++ GY+ 
Sbjct: 157 ALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVK 216

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V+ A++LF  M    + +WN ++S L Q+ R    LD+V +MQ+ GVR ++ T +S 
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S+L+ GK++H   ++N    + YVA+A+++ YAK G    A+ VF+    R+ 
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNN 336

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           + WT +I+ +  HG  +++V LFN+M    +  D      ++S C 
Sbjct: 337 VAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCC 382



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 148/309 (47%), Gaps = 36/309 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN M++  SQ G   E   +  +M  S  +R D  T  S L AC + S + +
Sbjct: 230 MPERDVVSWNMMVSALSQSGRVREALDMVVDM-QSKGVRLDSTTYTSSLTACARLSSLRW 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI +   +D ++ +AL+ +YAKCG    A+ + + + D++ V+          
Sbjct: 289 GKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVA---------- 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W  +I+G +Q+      ++L  +M+A  +  +   ++++
Sbjct: 339 ---------------------WTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATL 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  G+++H   +K+   + + V+ ++I  YAK   L  A+ +F     + +
Sbjct: 378 ISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDI 437

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+A++  G+ +KA   F+ M    +    +T+ A+L A    G  +    ++N 
Sbjct: 438 VSWTSMITAHSQVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNV 493

Query: 301 MSGQYGIQP 309
           M  +  ++P
Sbjct: 494 MLSEKDVRP 502



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 123/271 (45%), Gaps = 33/271 (12%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKD 107
           L++CG    +     +H  ++   +   +++ N L+  Y  CG+L D  R LL +++  +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            ++++ +++GY+  G +  A++LF  M    +++WN ++SG  Q+ ++ A L+    M  
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130

Query: 168 SG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           SG   PNA T +                ++ G   K     +  VA A++D + + G + 
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVD 190

Query: 227 GAQRVFDRFK-------------------------------GRSLIIWTAIISAYAAHGD 255
            A R+F R K                                R ++ W  ++SA +  G 
Sbjct: 191 LASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +A+ +  +M + G++ D  T+T+ L+ACA
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACA 281


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 264/465 (56%), Gaps = 10/465 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN++I  YS     E     +++ML+S V   +  T   +L+AC     +   ++VH  V
Sbjct: 56  WNAIIRAYSNSDEPELAFLSYQQMLSSSVPH-NSYTFPFLLRACRNLLAMGEALQVHGLV 114

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+     D++  NAL+ +YA CG +  AR L D + ++D VS++ +I GY+  G V+ A 
Sbjct: 115 IKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAY 174

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            +F  M    + +W ++ISGLV+  +    L L  EMQ +G   + V I+S+ +  ++  
Sbjct: 175 GVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLG 234

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAI 246
            L  G+ +H Y + N  D +  +  A+++ Y K G +  A  VF + KG  + + IWTA+
Sbjct: 235 ALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAM 294

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I  +A HG   +A+  FN M   GI+P+ +TFTAVL AC++ GLV++  ++F +M   Y 
Sbjct: 295 IDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYN 354

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           + PS+EHY CMV +L R+ R+ EA E + KMP+KPSA +WGALL    I  D  LG  V 
Sbjct: 355 VNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVG 414

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
            HL E++ +++G YI +A + +  G+W EA  VR +MK  G+   PG+S +  +G +  F
Sbjct: 415 AHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEF 474

Query: 427 VAKDTSGDKSEQIYLILERLLGLMRE-EGY------VLLDEVEEE 464
           +A      + EQI L L+++   +R+ EGY      +LLD   EE
Sbjct: 475 LAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEE 519



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 38/260 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSW S+I+G  + G   E  +L  EM N+     DGV + S+L AC     +  
Sbjct: 180 MPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG-FELDGVAIASLLTACANLGALDQ 238

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
           G  +H +V+ + + +D  I  AL+ MY KCG ++ A ++  ++  + KD   ++A+I G+
Sbjct: 239 GRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGF 298

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            +HG   +A++ F  M+R                                G+RPN++T +
Sbjct: 299 AIHGRGVEALEWFNRMRR-------------------------------EGIRPNSITFT 327

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT--AIIDTYAKTGFLHGAQRVFDRFK 236
           ++    S+   ++ GKE+   ++K  Y+ N  +     ++D   ++G L  A+ +  +  
Sbjct: 328 AVLRACSYGGLVEEGKELFK-SMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMP 386

Query: 237 GR-SLIIWTAIISAYAAHGD 255
            + S +IW A++ A   H D
Sbjct: 387 MKPSAVIWGALLKACWIHRD 406



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 147/356 (41%), Gaps = 70/356 (19%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F  +  P    WNA+I     ++  E      ++M +S V  N+ T   +     +
Sbjct: 41  AQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRN 100

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-------- 238
              +    ++HG  +K  +  +++   A++  YA  G +H A+++FD    R        
Sbjct: 101 LLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIM 160

Query: 239 -----------------------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
                                  +++ WT++IS     G + +A+SL  EM N G + D 
Sbjct: 161 IDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDG 220

Query: 276 VTFTAVLSACAHSGLVD-----------------------------KAWDIFNAMS--GQ 304
           V   ++L+ACA+ G +D                             K  D+  A+S  G+
Sbjct: 221 VAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGK 280

Query: 305 Y-GIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
             G Q  V  +  M+   +   R  EA E+ ++M    ++P++  + A+L   S  G VE
Sbjct: 281 LKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVE 340

Query: 361 LGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            GK +   +   + + P +  +Y  M +L  ++GR DEA  + ++M     A I G
Sbjct: 341 EGKELFKSMKCFYNVNP-SIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWG 395



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIID--TYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           +K  K+I    +K        +AT  +   T    G L  AQRVF+     +  +W AII
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
            AY+   +   A   + +ML++ +  +  TF  +L AC +   + +A  + + +  + G 
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQV-HGLVIKLGF 119

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
              V     ++ V +    I  A +    +P +  A  W  ++ G   SGDV+    V  
Sbjct: 120 GSDVFALNALLHVYALCGEIHCARQLFDNIPER-DAVSWNIMIDGYIKSGDVKTAYGV-- 176

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              ++  +N  ++  + +   +AG+  EA  +  +M+ +G 
Sbjct: 177 -FLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGF 216


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 271/486 (55%), Gaps = 41/486 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+WN +I+GY Q G  E+   +  +++    L+ D VT+ +++ A  ++ ++  
Sbjct: 333 MIEKDVVTWNLLISGYVQQGLVEDAIHMC-QLMRLENLKYDCVTLSTLMSAAARTQNLKL 391

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD------------- 107
           G EV  + I      D+ + +  + MYA CGS+  A+ + D +  KD             
Sbjct: 392 GKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAE 451

Query: 108 ----------------------EVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLST 141
                                  ++++ II  ++ +G V +A ++F  M+     P L +
Sbjct: 452 SGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVS 511

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           W  +++GLVQN   E  +  +R+MQ SG+RPNA +I+   S  S+ ++L  G+ +HGY +
Sbjct: 512 WTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYII 571

Query: 202 KNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +N+ +  ++ + T+++D YAK G ++ A+ VF       L ++ A+ISAYA +G+  +A+
Sbjct: 572 RNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAI 631

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           +L   + + GI+PD +TFT++LSAC H+G V +A +IF  M  ++GI+P +EHY  MV +
Sbjct: 632 ALCRRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDI 691

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L+ A    +A   + +MP K  A++  +L+   ++    EL  F+  HL E EPEN+GNY
Sbjct: 692 LASAGETDKALRLIEEMPYKSDARMIQSLVASCNMKHKTELMDFLSRHLLETEPENSGNY 751

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
           + ++N Y+  G WDE  + RE MK   L K PG SWI   GG+  FVA D +  ++++I 
Sbjct: 752 VTISNAYAVEGSWDEVVKTREMMKAKRLKKSPGCSWIRIKGGVHVFVANDKTHLRNKEIR 811

Query: 441 LILERL 446
            IL  L
Sbjct: 812 SILALL 817



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 194/404 (48%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    +  P  VTV + L A      I  
Sbjct: 232 IPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGI-EPTRVTVSTCLSASANMDGIEE 290

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + +++D  +  + +  Y K G ++YA  + D M +KD V           
Sbjct: 291 GKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVV----------- 339

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    E  + + + M+   ++ + VT+S++
Sbjct: 340 --------------------TWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTL 379

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GKE+  Y +++ +  +I +A+  +D YA  G +  A++VFD    + L
Sbjct: 380 MSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDL 439

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  ++S YA  G + +A  LF EM    + P+ +T+  ++ +   +G V++A +IF+ 
Sbjct: 440 ILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQ 499

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  L +     EA  F+ KM    ++P+A      L   S   
Sbjct: 500 MQSS-GIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLA 558

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            +  G+ V  ++   +  ++   I   + ++Y++ G  ++A+ V
Sbjct: 559 SLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMV 602



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 196/429 (45%), Gaps = 52/429 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  EE    F EML + +  PD   V +V +ACG      FG  
Sbjct: 134 RNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIF-PDNFVVPNVCKACGALQWSRFGRG 192

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V++S +   +++ ++L  MY KCG LD AR + DE+ +++ V+             
Sbjct: 193 VHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA------------- 239

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++ G VQN  +E  + L+ +M+  G+ P  VT+S+  S 
Sbjct: 240 ------------------WNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSA 281

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T+ ++ Y K G +  A+ +FDR   + ++ W
Sbjct: 282 SANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTW 341

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             +IS Y   G    A+ +   M    ++ D VT + ++SA A +     G   + + I 
Sbjct: 342 NLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIR 401

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           ++ +    +  +        G +  A+++ ++        +     +W  LL   + SG 
Sbjct: 402 HSFASDIVLASTAVDMYANCGSIIDAKKVFDSV-------LAKDLILWNTLLSVYAESGL 454

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR- 414
             E  +   +   E  P N  T N II++ L  + G+ +EA  +  QM+ SG+   P   
Sbjct: 455 SGEAFRLFYEMQLESVPPNAITWNLIILSFL--RNGQVNEAKEIFSQMQSSGI--FPNLV 510

Query: 415 SWIECSGGL 423
           SW     GL
Sbjct: 511 SWTTMMNGL 519



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 167/392 (42%), Gaps = 48/392 (12%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S+   ++  S+ G   E  +L  EM +   LR        +LQ C    D+  G ++H  
Sbjct: 35  SYFHRVSSLSKSGEIREALSLLTEM-DFRKLRIGPEIYGEILQGCVYERDLCTGKQIHAR 93

Query: 68  VIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           ++++      + +I   L+  YAKC + + +  L  ++  ++  S++AII          
Sbjct: 94  ILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIG--------- 144

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                  V  R GL                EA++  V EM  + + P+   + ++     
Sbjct: 145 -------VKCRIGLC--------------EEALMGFV-EMLQNEIFPDNFVVPNVCKACG 182

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                + G+ +HGY VK+     ++VA+++ D Y K G L  A++VFD    R+++ W A
Sbjct: 183 ALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNA 242

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVDKAWDIFNA 300
           ++  Y  +G   +A+ L ++M   GI+P  VT +  LSA A+      G    A  I N 
Sbjct: 243 LMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNG 302

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +     +  S  ++ C VG++       E  E +    ++     W  L+ G    G VE
Sbjct: 303 LELDNILGTSNLNFYCKVGLI-------EYAEMIFDRMIEKDVVTWNLLISGYVQQGLVE 355

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
               +C  L  +E     + + ++ L S A R
Sbjct: 356 DAIHMC-QLMRLENLKY-DCVTLSTLMSAAAR 385



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 36/234 (15%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L ++      L L+ EM    +R        I     +  +L  GK+I
Sbjct: 31  PSSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGCVYERDLCTGKQI 90

Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y +N Y+ T ++  YAK      ++ +F + + R++  W AII      G
Sbjct: 91  HARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIG 150

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----------------HSGLVDKAWDIF 298
              +A+  F EML N I PD      V  AC                  SGL D  + + 
Sbjct: 151 LCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVF-VA 209

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           ++++  YG            GVL  AR++ +      ++P + +   W AL+ G
Sbjct: 210 SSLADMYG----------KCGVLDDARKVFD------EIPER-NVVAWNALMVG 246


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/467 (32%), Positives = 259/467 (55%), Gaps = 13/467 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R ++ WN++I  Y +  F  +   LF E+++  +  PD  T+  V++ C +   +  
Sbjct: 76  IQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL--PDNFTLPCVIKGCARLGVVQE 133

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV----------- 109
           G ++H   ++     D+++  +L+ MY+KCG +D AR + D M DKD V           
Sbjct: 134 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLV 193

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           S++A+I+GYM  G  + A++LF  M    L TWN +I+G   N +    + +   M   G
Sbjct: 194 SWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLG 253

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
            RP+  T+ S+ S  S  + L  G+ IH Y  KN ++ +  + T++I+ YAK G +  A 
Sbjct: 254 SRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESAL 313

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            VF   + + +  WTAII     HG A+ A++LF EM   G++P+ + F  VL+AC H+G
Sbjct: 314 TVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAG 373

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           LVD     F+ M  +Y I+P++EHY C+V +L RA  + EA   +  MP+ P+  +W +L
Sbjct: 374 LVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSL 433

Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           L G+   G +++G++    + E+ PE  G YI+++N+Y+ +G W++   VRE M + G  
Sbjct: 434 LGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFR 493

Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           K PG S +E  G L  F+  D S  ++++IY  +  +   ++  G+V
Sbjct: 494 KDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 540



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/463 (19%), Positives = 175/463 (37%), Gaps = 132/463 (28%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA--KCGSLDYARALLDEM 103
           +S+ Q C    ++    ++H F +++ I    ++ + L+ +Y+  K   L YAR++ D +
Sbjct: 20  LSLFQTCSAPQEV---EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI 76

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
                                          +R  L  WN +I   V+N      + L  
Sbjct: 77  -------------------------------QRRSLIHWNTIIKCYVENQFSHDGIVLFH 105

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           E+    + P+  T+  +    +    ++ GK+IHG A+K  +  +++V  ++++ Y+K G
Sbjct: 106 ELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCG 164

Query: 224 FLHGAQRVFDRFKGRSLII-----------WTAIISAYAAHGDASKAVSLFNE------- 265
            +  A++VFD    + +++           W A+I+ Y   GD   A+ LF +       
Sbjct: 165 EIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLV 224

Query: 266 ------------------------MLNNGIQPDPVTFTAVLSAC---------------- 285
                                   ML  G +P   T  +VLSA                 
Sbjct: 225 TWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYM 284

Query: 286 -------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV---GVLSR 323
                              A  G ++ A  +F A+      +  V H+  ++   G+   
Sbjct: 285 EKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQ-----KKKVGHWTAIIVGLGIHGM 339

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNY 380
           A         + K  +KP+A ++  +L   + +G V+ G+   D +   ++IEP    +Y
Sbjct: 340 ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEP-TLEHY 398

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS-WIECSGG 422
             + ++  +AG  +EA    E M  S     P +  W+   GG
Sbjct: 399 GCLVDILCRAGHLEEAKNTIENMPIS-----PNKVIWMSLLGG 436


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 263/465 (56%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ VSW  +I G  Q   + +   LF +M  + ++  D   + +++  C    D+  
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLISGCFNRMDLCL 389

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI +YAKCG L  A  +   MS++D VS++++I+ Y  
Sbjct: 390 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISS 179
            G + KA + F  M      TWNA++   +Q+   E  L +   M +   V P+ VT  +
Sbjct: 450 IGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G+ VK     N+ VA A I  Y+K G +  AQ++FD   G+ 
Sbjct: 510 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 569

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I+ Y+ HG   +A   F++ML+ G +PD +++ AVLS C+HSGLV +    F+
Sbjct: 570 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 629

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M+  +GI P +EH++CMV +L RA  ++EA + + KMP+KP+A+VWGALL    I G+ 
Sbjct: 630 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 689

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    H+FE++  ++G+Y+++A +YS AG+ D++ +VR+ M++ G+ K PG SW+E 
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEV 749

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +  F A D S  +   I   L+ L+  +   GYV  +    E
Sbjct: 750 ENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSE 794



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 8/289 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ SWN++++GY Q   + +    F  M  S    P+  T   V+++CG     + 
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGA----LG 152

Query: 61  GMEVHNFVIESHIKMDLW----ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
             E+   ++    K D W    +  AL+ M+ +CG +D+A  L  ++        +++++
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLA 212

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY     ++ A++ F+ M    + +WN +I+ L Q+ R    L LV EM   GVR ++ T
Sbjct: 213 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 272

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +S  +  +   +L  GK++H   +++    + YVA+A+I+ YAK G    A+RVF+  +
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            R+ + WT +I     +   SK+V LFN+M    +  D      ++S C
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 205/481 (42%), Gaps = 101/481 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD+VSWN MIA  SQ G   E   L  EM    V R D  T  S L AC +   + +
Sbjct: 230 MAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV-RLDSTTYTSSLTACARLFSLGW 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI S  ++D ++ +ALI +YAKCGS   A+ + + + D++ VS++ +I G + 
Sbjct: 289 GKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 348

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +    K+++LF                                +M+A  +  +   ++++
Sbjct: 349 YECFSKSVELFN-------------------------------QMRAELMAIDQFALATL 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S   +  +L  G+++H   +K+ ++R I V+ ++I  YAK G L  A+ VF     R +
Sbjct: 378 ISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437

Query: 241 IIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQ----------------- 272
           + WT++I+AY+  G+  KA   F           N ML   IQ                 
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 273 ----PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
               PD VT+  +   CA  G  +K  D     + + G+  +V      + + S+  RIS
Sbjct: 498 KDVTPDWVTYVTLFRGCADIG-ANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS 556

Query: 329 EATEFVSKMP----------------------------------VKPSAKVWGALLYGAS 354
           EA +    +                                    KP    + A+L G S
Sbjct: 557 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 616

Query: 355 ISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            SG V+ GK   D +  +   + G  ++  M +L  +AG   EA  + ++M     A++ 
Sbjct: 617 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 676

Query: 413 G 413
           G
Sbjct: 677 G 677



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 33/275 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD-EM 103
           +   L++CG    +     +H  ++   +   +++ N L+  Y  CG+L  AR LL  ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            + + ++++ +++GY   G +  A +LF  M R  +++WN ++SG  Q  R    L+   
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 164 EMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            M  SG   PNA T   +          +   ++ G   K  +  +  V TA++D + + 
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 223 GFLHGAQRVFDRFKG-------------------------------RSLIIWTAIISAYA 251
           G++  A R+F + +                                R ++ W  +I+A +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             G   +A+ L  EM   G++ D  T+T+ L+ACA
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 281


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 253/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + DIV +N+M  GY++         LF ++L S +  PD  T  S+L+AC     +  
Sbjct: 81  IPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLF-PDDYTFPSLLKACASCKALEE 139

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   I+  +  ++++C  LI MY  C  +D AR + D++ +               
Sbjct: 140 GRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWE--------------- 184

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                           P + T+NA+I+G  + +R    L L RE+QA  ++P  VT+ S+
Sbjct: 185 ----------------PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSV 228

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK +H Y  KN ++R + V TA+ID YAK G L  A  VF+    R  
Sbjct: 229 LSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDT 288

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W+A+I AYA HG   KAVSLF EM   G +PD +TF  +L AC+H+GLV++ ++ F  
Sbjct: 289 QAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYG 348

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YG+ P ++HY CMV +L RA R+ EA EF+  +P++P+  +W  LL      G+VE
Sbjct: 349 MRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVE 408

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V + +FE++  + G+YII++NL ++AGRW++ + VR+ M E G+ KIPG S +E +
Sbjct: 409 LGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVN 468

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F + D     S +++  L+ L+  ++  GYV
Sbjct: 469 NVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYV 504



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 4/235 (1%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A  LF  + +P +  +N +  G  + +       L  ++  SG+ P+  T  S+   
Sbjct: 71  MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ G+++H  A+K     N+YV   +I+ Y     +  A+RVFD+     ++ +
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMS 302
            A+I+ YA     ++A+SLF E+    ++P  VT  +VLS+CA  G +D   W   +   
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKW--MHEYV 248

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            + G    V+    ++ + ++   + +A      M V+   + W A++   +I G
Sbjct: 249 KKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIHG 302



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 47/265 (17%)

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA---KTGFLHGAQRVFDRFKG 237
            SL    ++L+  K++  +A+K     ++ V T  I+  +    T  +  A  +FD+   
Sbjct: 24  LSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQ 83

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
             ++++  +   YA      +A +LF ++L +G+ PD  TF ++L ACA    +++   +
Sbjct: 84  PDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQL 143

Query: 298 FNAMSGQYGI-------------------------------QPSVEHYACMVGVLSRARR 326
            + ++ + G+                               +P V  Y  M+   +R  R
Sbjct: 144 -HCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202

Query: 327 ISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII- 382
            +EA     ++    +KP+     ++L   ++ G ++LGK+    + E   +N  N  + 
Sbjct: 203 PNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKW----MHEYVKKNGFNRFVK 258

Query: 383 ----MANLYSQAGRWDEADRVREQM 403
               + ++Y++ G  D+A  V E M
Sbjct: 259 VDTALIDMYAKCGSLDDAVCVFENM 283


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 266/466 (57%), Gaps = 8/466 (1%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M + Y + G   E   +F  M++S V RPD ++++S + +C Q  +I++G   H +V+
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGV-RPDRISMLSAISSCSQLRNILWGKSCHGYVL 364

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
            +  +    ICNALI MY KC   D A  + D MS+K  V++++I++GY+ +G V+ A +
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFS 188
            F+ M    + +WN +ISGLVQ +  E  +++   MQ+  GV  + VT+ SI S   H  
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L   K I+ Y  KN    ++ + T ++D +++ G    A  +F+    R +  WTA I 
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
           A A  G+A +A+ LF++M+  G++PD V F   L+AC+H GLV +  +IF +M   +G+ 
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P   HY CMV +L RA  + EA + +  MP++P+  +W +LL    + G+VE+  +  + 
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK 664

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           +  + PE TG+Y++++N+Y+ AGRW++  +VR  MKE GL K PG S I+  G    F +
Sbjct: 665 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTS 724

Query: 429 KDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEESAYV 468
            D S  +   I  +L+ +      LG + +   VL+D  E+E  ++
Sbjct: 725 GDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFM 770



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 35/308 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSW SMI GY++  F ++   LF  M+    + P+ VT+V V+ AC +  D+  
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V+ F+  S I+++  + +AL+ MY KC ++D A+ L DE    +    +A+ S Y+ 
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+ +F +                               M  SGVRP+ +++ S 
Sbjct: 315 QGLTREALGVFNL-------------------------------MMDSGVRPDRISMLSA 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S   N+  GK  HGY ++N ++    +  A+ID Y K      A R+FDR   +++
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +I++ Y  +G+   A   F  M    I    V++  ++S      L ++A ++F +
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCS 459

Query: 301 MSGQYGIQ 308
           M  Q G+ 
Sbjct: 460 MQSQEGVN 467



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 148/279 (53%), Gaps = 31/279 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I GY+  G   E   LF  M+NS +  PD  T    L AC +S     G+++H  +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGI-SPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     DL++ N+L+  YA+CG LD AR + DEMS+++ VS++++I GY    F + A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           DLF                             +VR+ +   V PN+VT+  + S  +   
Sbjct: 221 DLF---------------------------FRMVRDEE---VTPNSVTMVCVISACAKLE 250

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G++++ +   +  + N  + +A++D Y K   +  A+R+FD +   +L +  A+ S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            Y   G   +A+ +FN M+++G++PD ++  + +S+C+ 
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 31/163 (19%)

Query: 188 SNLKGGKEI------HGYAVKNRYDRNIYVATAIIDTYAKTGF---LHGAQRVFDRFKGR 238
           S+LK  K I      H    K   D ++   T ++    + G    L  A+ VF+  +  
Sbjct: 37  SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESY 96

Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS--------- 288
            +  ++ ++I  YA+ G  ++A+ LF  M+N+GI PD  TF   LSACA S         
Sbjct: 97  GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156

Query: 289 -GLVDK---AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            GL+ K   A D+F        +Q S+ H+    G L  AR++
Sbjct: 157 HGLIVKMGYAKDLF--------VQNSLVHFYAECGELDSARKV 191


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 253/447 (56%), Gaps = 2/447 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+++  Y++ G + E   L+R+      +  +  +   VL  C +  ++  
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLD-MGFNAFSFAGVLILCVKLKELQL 213

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH  V+ +    +L + ++++  YAKCG +  AR L DEM  KD  +++ I+SGY  
Sbjct: 214 AKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAK 273

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A +LF  M      +W+A+ISG  +N+     LD   +M   G+ P   T SS 
Sbjct: 274 WGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSC 333

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS- 239
               +  + LK GK++HGY ++  +  N  V +++ID Y+K G L  +  VF     +  
Sbjct: 334 LCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQD 393

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++W  +ISA A +G   KA+ +FN+M+ +G++PD +TF  +LSAC+HSGLV +    F 
Sbjct: 394 VVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFK 453

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           AM+  +G+ P  EHY+C++ +L RA    E    +  M  KP  +VW ALL    I  ++
Sbjct: 454 AMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNI 513

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+ V + + E++P+++  Y+ +A+LY+  G+W+  ++VRE M E  + K  G SWI+ 
Sbjct: 514 ELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDV 573

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERL 446
                SF+A D      E+IYL+LE+L
Sbjct: 574 GNKTHSFIASDRLHPLKEEIYLLLEQL 600



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 188/403 (46%), Gaps = 13/403 (3%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
            S++   SQG   E    L R +    V  P G+  V +L+ C ++     G  VH  + 
Sbjct: 32  QSLLDLSSQGRLPEALSYLDR-LAQRGVRLPTGI-FVDLLRLCAKAKYFKGGKCVHLHLK 89

Query: 70  ESHIKMDLWI-CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +  K    I  N LIGMY +CG    AR + D+MS ++  S++ +++GY   G V  A 
Sbjct: 90  HTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNAR 149

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M    + +WN ++    +       + L R+ +   +  NA + + +  L     
Sbjct: 150 KLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLK 209

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L+  K++HG  +   +  N+ ++++I+D YAK G +  A+ +FD    + +  WT I+S
Sbjct: 210 ELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVS 269

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA  GD + A  LF++M     + +PV+++A++S  A + L  +A D F  M  ++GI 
Sbjct: 270 GYAKWGDMNSASELFHQM----PEKNPVSWSALISGYARNSLGHEALDYFTKMM-KFGIN 324

Query: 309 PSVEHYA---CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           P    ++   C    ++  +   +   ++ +   + +  V  +L+   S  G +E     
Sbjct: 325 PEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEAS--C 382

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           C        ++   +  M +  +Q G  ++A ++   M ESGL
Sbjct: 383 CVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 266/466 (57%), Gaps = 8/466 (1%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M + Y + G   E   +F  M++S V RPD ++++S + +C Q  +I++G   H +V+
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGV-RPDRISMLSAISSCSQLRNILWGKSCHGYVL 364

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
            +  +    ICNALI MY KC   D A  + D MS+K  V++++I++GY+ +G V+ A +
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFS 188
            F+ M    + +WN +ISGLVQ +  E  +++   MQ+  GV  + VT+ SI S   H  
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L   K I+ Y  KN    ++ + T ++D +++ G    A  +F+    R +  WTA I 
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
           A A  G+A +A+ LF++M+  G++PD V F   L+AC+H GLV +  +IF +M   +G+ 
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P   HY CMV +L RA  + EA + +  MP++P+  +W +LL    + G+VE+  +  + 
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK 664

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
           +  + PE TG+Y++++N+Y+ AGRW++  +VR  MKE GL K PG S I+  G    F +
Sbjct: 665 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTS 724

Query: 429 KDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEESAYV 468
            D S  +   I  +L+ +      LG + +   VL+D  E+E  ++
Sbjct: 725 GDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFM 770



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 35/308 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSW SMI GY++  F ++   LF  M+    + P+ VT+V V+ AC +  D+  
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +V+ F+  S I+++  + +AL+ MY KC ++D A+ L DE    +    +A+ S Y+ 
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   +A+ +F +                               M  SGVRP+ +++ S 
Sbjct: 315 QGLTREALGVFNL-------------------------------MMDSGVRPDRISMLSA 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S   N+  GK  HGY ++N ++    +  A+ID Y K      A R+FDR   +++
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +I++ Y  +G+   A   F  M    I    V++  ++S      L ++A ++F +
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCS 459

Query: 301 MSGQYGIQ 308
           M  Q G+ 
Sbjct: 460 MQSQEGVN 467



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 148/279 (53%), Gaps = 31/279 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I GY+  G   E   LF  M+NS +  PD  T    L AC +S     G+++H  +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGI-SPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     DL++ N+L+  YA+CG LD AR + DEMS+++ VS++++I GY    F + A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           DLF                             +VR+ +   V PN+VT+  + S  +   
Sbjct: 221 DLF---------------------------FRMVRDEE---VTPNSVTMVCVISACAKLE 250

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G++++ +   +  + N  + +A++D Y K   +  A+R+FD +   +L +  A+ S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            Y   G   +A+ +FN M+++G++PD ++  + +S+C+ 
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 31/163 (19%)

Query: 188 SNLKGGKEI------HGYAVKNRYDRNIYVATAIIDTYAKTGF---LHGAQRVFDRFKGR 238
           S+LK  K I      H    K   D ++   T ++    + G    L  A+ VF+  +  
Sbjct: 37  SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESY 96

Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS--------- 288
            +  ++ ++I  YA+ G  ++A+ LF  M+N+GI PD  TF   LSACA S         
Sbjct: 97  GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156

Query: 289 -GLVDK---AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            GL+ K   A D+F        +Q S+ H+    G L  AR++
Sbjct: 157 HGLIVKMGYAKDLF--------VQNSLVHFYAECGELDSARKV 191


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 259/459 (56%), Gaps = 6/459 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+M+ GY+Q G   E    F+E+  S + + +  +   +L AC +S  +  
Sbjct: 139 MPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGI-KFNEFSFAGLLTACVKSRQLQL 197

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             + H  V+ +    ++ +  ++I  YAKCG ++ A+   DEM+ KD   ++ +ISGY  
Sbjct: 198 NQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAK 257

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF+ M      +W A+I+G V+    +  LDL R+M A  V+P   T SS 
Sbjct: 258 LGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSC 317

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD-RFKGRS 239
               +  ++L+ GK+IHGY ++     N  V +++ID Y+K+G L  ++RVF   +  + 
Sbjct: 318 LCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQD 377

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            ++W  +ISA A HG   KA+ + ++M+   + P+  T   +L+AC+HSGLV++    F 
Sbjct: 378 CVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFE 437

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M+ Q+GI P  EHYAC++ +L RA    E    + +MP +P   +W A+L    I G+ 
Sbjct: 438 SMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNE 497

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELGK   + L +++PE++  YI+++++Y+  G+W+  +++R  MK+  + K    SWIE 
Sbjct: 498 ELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKAVSWIEI 557

Query: 420 SGGLQSFVAKDTS----GDKSEQIYLILERLLGLMREEG 454
              +++F   D S      + E+IY IL  L  LM EE 
Sbjct: 558 ENKVKAFTVSDGSHAHAHARKEEIYFILHNLAALMEEEA 596



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 184/369 (49%), Gaps = 14/369 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           KR I    S+++ ++     E  +A+ R E L    +R     + S+LQ CG +  +  G
Sbjct: 8   KRPICVARSLLSRHATKA--ELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQG 65

Query: 62  MEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +H  + I    + +  + N LIGMY KCG    A  + D+M  ++  S++ ++SG++ 
Sbjct: 66  KWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVK 125

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPNAVTISS 179
            G + +A  +F  M    + +WN ++ G  Q+ N HEA L   +E++ SG++ N  + + 
Sbjct: 126 SGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEA-LWFFKELRRSGIKFNEFSFAG 184

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + +       L+  ++ HG  +   +  N+ ++ +IID YAK G +  A+R FD    + 
Sbjct: 185 LLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + IWT +IS YA  GD   A  LF EM     + +PV++TA+++     G  D A D+F 
Sbjct: 245 IHIWTTLISGYAKLGDMEAADKLFREM----PEKNPVSWTALIAGYVRQGSGDLALDLFR 300

Query: 300 AMSGQYGIQPSVEHYA---CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            M     ++P    ++   C    ++  R   +   ++ +  V+P+A V  +L+   S S
Sbjct: 301 KMIAMR-VKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKS 359

Query: 357 GDVELGKFV 365
           G +E  + V
Sbjct: 360 GSLEASERV 368


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 169/471 (35%), Positives = 253/471 (53%), Gaps = 41/471 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+++SWN+MIAGY+     EE   LFREM     + PDG T  S L+AC  +     GM+
Sbjct: 68  RNVISWNAMIAGYTNERNGEEALNLFREMREKGEV-PDGYTYSSSLKACSCADAAGEGMQ 126

Query: 64  VHNFVIESHIK--MDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           +H  +I           +  AL+ +Y KC  +  AR + D + +K  +S           
Sbjct: 127 IHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMS----------- 175

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               W+ +I G  Q +  +  +DL RE++ S  R +   +SSI 
Sbjct: 176 --------------------WSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSII 215

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +F+ F+ L+ GK++H Y +K  Y    + VA +++D Y K G    A  +F     R++
Sbjct: 216 GVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNV 275

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I+ Y  HG  +KAV LFNEM  NGI+PD VT+ AVLSAC+HSGL+ +    F+ 
Sbjct: 276 VSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSI 335

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +     I+P VEHYACMV +L R  R+ EA   + KMP+KP+  +W  LL    + GDVE
Sbjct: 336 LCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVE 395

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK V + L   E  N  NY++++N+Y+ AG W E++++RE +K  GL K  GRSW+E  
Sbjct: 396 MGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMD 455

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE-GYVL-----LDEVEEES 465
             +  F   D      E+I+ +L+ +   ++EE GYV      L +VEEES
Sbjct: 456 KEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEES 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 36/292 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++ ++SW+++I GY+Q    +E   LFRE+  S   R DG  + S++      + +  
Sbjct: 168 IEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESR-HRMDGFVLSSIIGVFADFALLEQ 226

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G ++H + I+  +  +++ + N+++ MY KCG    A AL  EM +++ VS++ +I+GY 
Sbjct: 227 GKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYG 286

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            HG   KA++LF                                EMQ +G+ P++VT  +
Sbjct: 287 KHGIGNKAVELFN-------------------------------EMQENGIEPDSVTYLA 315

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           + S  SH   +K GK+       N +    +     ++D   + G L  A+ + ++   +
Sbjct: 316 VLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLK 375

Query: 239 SLI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             + IW  ++S    HGD      +  E+L      +P  +  V +  AH+G
Sbjct: 376 PNVGIWQTLLSVCRMHGDVEMGKQV-GEILLRREGNNPANYVMVSNMYAHAG 426



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 162/402 (40%), Gaps = 83/402 (20%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
            +L  C +   +  G +VH  V +    +   + N++I MY+KCG               
Sbjct: 9   KILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCG--------------- 53

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
                            V +A  +F  +    + +WNA+I+G       E  L+L REM+
Sbjct: 54  ----------------MVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMR 97

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGF 224
             G  P+  T SS     S       G +IH   +++   Y     VA A++D Y K   
Sbjct: 98  EKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRR 157

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE------------------- 265
           +  A++VFDR + +S++ W+ +I  YA   +  +A+ LF E                   
Sbjct: 158 MAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGV 217

Query: 266 -----MLNNGIQPDPVTF------------TAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
                +L  G Q    T              +VL      GL  +A  +F  M     ++
Sbjct: 218 FADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREM-----LE 272

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGK-- 363
            +V  +  M+    +    ++A E  ++M    ++P +  + A+L   S SG ++ GK  
Sbjct: 273 RNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKY 332

Query: 364 --FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
              +C +  +I+P+   +Y  M +L  + GR  EA  + E+M
Sbjct: 333 FSILCSNQ-KIKPK-VEHYACMVDLLGRGGRLKEAKNLIEKM 372


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 260/474 (54%), Gaps = 40/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D++SW +MI G ++ GF  E   +++EM  + V  P+ VT  S+L AC   + + +
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV-EPNRVTYTSILNACSSPAALEW 447

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V+E+ +  D  + N L+ MY+ CGS+  AR + D M  +D V+Y         
Sbjct: 448 GRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAY--------- 498

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 NA+I G   +N  +  L L   +Q  G++P+ VT  ++
Sbjct: 499 ----------------------NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 536

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  ++  +L+  +EIH    K  +  +  V  A++ TYAK G    A  VF++   R++
Sbjct: 537 LNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNV 596

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W AII   A HG    A+ LF  M   G++PD VTF ++LSAC+H+GL+++    F +
Sbjct: 597 ISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCS 656

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + I P++EHY CMV +L RA ++ EA   +  MP + + ++WGALL    I G+V 
Sbjct: 657 MSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVP 716

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   +   +++ +N   Y+ ++++Y+ AG WD A ++R+ M++ G+ K PGRSWI+  
Sbjct: 717 VAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVG 776

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
             L  FVA+D S  +SE+IY  L+RL   M+ +GYV         +DE E+E+A
Sbjct: 777 DKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENA 830



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 196/409 (47%), Gaps = 37/409 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R + SWN+M+ GY Q G+ E+   L R+M     L PD  T++S L +C     + +G 
Sbjct: 88  ERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHG-LAPDRTTIMSFLSSCKSPGALEWGR 146

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H   +++ +  D+ + N ++ MYAKCGS++ AR + D+M  K  VS++  I GY   G
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCG 206

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             E A ++FQ                               +M+  GV PN +T  S+ +
Sbjct: 207 RSETAFEIFQ-------------------------------KMEQEGVVPNRITYISVLN 235

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
            FS  + LK GK +H   +   ++ +  V TA++  YAK G     ++VF++   R LI 
Sbjct: 236 AFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA 295

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  +I   A  G   +A  ++N+M   G+ P+ +T+  +L+AC +S  +    +I + ++
Sbjct: 296 WNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVA 355

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            + G    +     ++ + SR   I +A     KM V+     W A++ G + SG     
Sbjct: 356 -KAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIGGLAKSGFGAEA 413

Query: 363 KFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
             V   + +  +EP N   Y  + N  S     +   R+ +Q+ E+GLA
Sbjct: 414 LTVYQEMQQAGVEP-NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA 461



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 193/412 (46%), Gaps = 41/412 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K+ +VSW   I GY+  G  E    +F++M    V+ P+ +T +SVL A    + + +
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV-PNRITYISVLNAFSSPAALKW 245

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+ ++ +  + D  +  AL+ MYAKCGS    R + +++ ++D             
Sbjct: 246 GKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRD------------- 292

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L  WN +I GL +    E   ++  +MQ  GV PN +T   +
Sbjct: 293 ------------------LIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVIL 334

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +   + + L  GKEIH    K  +  +I V  A+I  Y++ G +  A+ VFD+   + +
Sbjct: 335 LNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDV 394

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+I   A  G  ++A++++ EM   G++P+ VT+T++L+AC+    ++    I   
Sbjct: 395 ISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQ 454

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGD 358
           +  + G+         +V + S    + +A +   +M ++     + A++  Y A   G 
Sbjct: 455 VV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGK 512

Query: 359 VELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             L  F  D L E  ++P+    YI M N  + +G  + A  +   +++ G 
Sbjct: 513 EALKLF--DRLQEEGLKPDKV-TYINMLNACANSGSLEWAREIHTLVRKGGF 561



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 29/239 (12%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           + +L+ C +  D+V G +VH  +I+     D +  NALI MY +CGS++ AR +  ++S 
Sbjct: 27  MKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS- 85

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                            ++E+            + +WNA++ G +Q    E  L L+R+M
Sbjct: 86  -----------------YMERT-----------VHSWNAMVVGYIQYGYIEKALKLLRQM 117

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           Q  G+ P+  TI S  S       L+ G+EIH  A++     ++ VA  I++ YAK G +
Sbjct: 118 QQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSI 177

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
             A+ VFD+ + +S++ WT  I  YA  G +  A  +F +M   G+ P+ +T+ +VL+A
Sbjct: 178 EEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
           +  +D+V+ +Q  G + N+     +        +L  G+++H + +++R   + Y   A+
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 216 IDTYAKTGFLHGAQRVFDR--FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           I+ Y + G +  A++V+ +  +  R++  W A++  Y  +G   KA+ L  +M  +G+ P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 274 DPVTFTAVLSACAHSGLVDKAWDI-FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           D  T  + LS+C   G ++   +I F AM  Q G+   V+   C++ + ++   I EA E
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI----EPE----NTGNYIIMA 384
              KM  K S   W   + G +  G  E         FEI    E E    N   YI + 
Sbjct: 183 VFDKME-KKSVVSWTITIGGYADCGRSETA-------FEIFQKMEQEGVVPNRITYISVL 234

Query: 385 NLYSQ--AGRWDEADRVR 400
           N +S   A +W +A   R
Sbjct: 235 NAFSSPAALKWGKAVHSR 252


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/466 (34%), Positives = 263/466 (56%), Gaps = 16/466 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQS 55
           M +RD VSWN+MI+GY+  G ++E   LF +M      R +G+     T  ++   C QS
Sbjct: 255 MLERDDVSWNTMISGYASKGMWKEAFELFGKM------RVEGIELNIITWNTIAGGCVQS 308

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL----LDEMSDKDEVSY 111
            +    +E+ + +    I MD       +G  +  G++   R +    +    D  +   
Sbjct: 309 GNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVK 368

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           +A+I+ Y    ++  A +LFQ  +   + TWN+++SG    +R E    L REM  SG+ 
Sbjct: 369 NALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIE 428

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQR 230
           PN VTI+SI  L +  +NL+ GKE H Y ++   +   + +  +++D YA++G +  A+R
Sbjct: 429 PNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKR 488

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +FD    R  + +T++I+ Y   G+  +A+ LF+EM    I+PD VT  AVLSAC+HSGL
Sbjct: 489 LFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGL 548

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V +   +F  M   YGI P +EH+ACMV +  RA  + +A E +++MP +PS+ +W  LL
Sbjct: 549 VTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLL 608

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               I G+ E+G++  + L E+ PEN+G Y+++AN+Y+ AG W +  +VR  M++ G+ K
Sbjct: 609 GACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRK 668

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            PG +W++   G   F+  DTS     ++Y +LE L  LM++  YV
Sbjct: 669 APGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELMKDAEYV 714



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 192/356 (53%), Gaps = 6/356 (1%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + WN +I+ Y + G + E  + +++M +  + RPD  T  SVL+ACG+  DI FG ++H 
Sbjct: 160 LPWNLLISSYVRNGLHGEALSAYKQMTHKGI-RPDKFTYPSVLKACGEKLDIAFGKKLHA 218

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +  S +  +L++ N+L+ MYAK G L  AR L + M ++D+VS++ +ISGY   G  ++
Sbjct: 219 SINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKE 278

Query: 127 AMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           A +LF  M+  G+     TWN +  G VQ+   E  L+L+  M++ G+  ++V       
Sbjct: 279 AFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLG 338

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             SH   +K G+EIHG A+++ YD    V  A+I  Y++  +L  A  +F   + +++I 
Sbjct: 339 ACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIIT 398

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +++S Y     + +A  LF EML +GI+P+ VT  ++L  CA    +    +    + 
Sbjct: 399 WNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYIL 458

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            + G +  +  +  +V + +R+ ++ EA      +  +     + +L+ G  I G+
Sbjct: 459 RRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEV-TYTSLIAGYGIQGE 513



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 50/101 (49%)

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
           +  +L  GK++H   +   ++++  +   ++  Y     L  A  + +       + W  
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +IS+Y  +G   +A+S + +M + GI+PD  T+ +VL AC 
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACG 205


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 263/482 (54%), Gaps = 24/482 (4%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + SWN M  GYS+    +   +L+ EML   V +PD  T   + +   +S  +  G E+H
Sbjct: 79  VFSWNIMFKGYSRIACPKLGVSLYLEMLERNV-KPDCYTYPFLFKGFTRSVALQLGRELH 137

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY------- 118
             V++  +  +++  NALI MY+ CG +D AR + D     D V+++A+ISGY       
Sbjct: 138 CHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDV 197

Query: 119 -----MVHGFV-----EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
                +V GFV     + A   F  M      +W A+I G ++ N ++  L L REMQ S
Sbjct: 198 ISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTS 257

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
            ++P+  T+ S+ +  +    L+ G+ I  Y  KN+   + +V  A+ID Y K G +  A
Sbjct: 258 KIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMA 317

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
             +F+    R    WTA++   A +G   +A+++F++ML   + PD VT+  VLSAC H+
Sbjct: 318 LSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHT 377

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G+VD+    F +M+ ++GI+P++ HY CMV +L +A  + EA E +  MP+KP++ VWGA
Sbjct: 378 GMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGA 437

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           LL    I  D E+ +   + + E+EP N   Y++  N+Y+   +WD+   +R+ M + G+
Sbjct: 438 LLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGI 497

Query: 409 AKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVE 462
            K PG S IE +G +  FVA D S  ++++IY  L ++   ++  GY      V LD  E
Sbjct: 498 KKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAE 557

Query: 463 EE 464
           E+
Sbjct: 558 ED 559



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 38/276 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW +MI GY +   Y+E   LFREM  S + +PD  T+VSVL AC Q   +  
Sbjct: 223 MPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKI-KPDEFTMVSVLTACAQLGALEL 281

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++ ++ +K D ++ NALI MY KCG+++ A ++ + +  +D+ +++A++ G  +
Sbjct: 282 GEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAI 341

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+++F                                +M  + V P+ VT   +
Sbjct: 342 NGCGEEALNMFS-------------------------------QMLKASVTPDEVTYVGV 370

Query: 181 FSLFSHFSNLKGGKEIHG-YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            S  +H   +  GK+       ++  + NI     ++D   K G L  A  +      + 
Sbjct: 371 LSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKP 430

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEML----NNG 270
           + I+W A++ A   H DA  A     ++L    NNG
Sbjct: 431 NSIVWGALLGACRIHKDAEMAERAIEQILELEPNNG 466



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 35/278 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  LF  +  P + +WN +  G  +    +  + L  EM    V+P+  T   +F  F+ 
Sbjct: 67  ARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTR 126

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G+E+H + VK   D N++   A+I+ Y+  G +  A+ +FD      ++ W A+
Sbjct: 127 SVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAM 186

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           IS Y                  N I+ D +++TA+++   ++G VD A   F+ M     
Sbjct: 187 ISGY------------------NRIKKDVISWTAIVTGFVNTGQVDAARKYFHKM----- 223

Query: 307 IQPSVEH--YACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVEL 361
             P  +H  +  M+    R     EA     +M    +KP      ++L   +  G +EL
Sbjct: 224 --PERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALEL 281

Query: 362 GKFVCDHLFEIEPEN---TGNYIIMANLYSQAGRWDEA 396
           G+++  ++ + + +N    GN +I  ++Y + G  + A
Sbjct: 282 GEWIRTYIDKNKVKNDTFVGNALI--DMYFKCGNVEMA 317



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 163/405 (40%), Gaps = 74/405 (18%)

Query: 63  EVHNFVIESHIKMDLWICNALI--GMYAKC-----GSLDYARALLDEMSDKDEVSYSAII 115
           ++H+  I++ I     ICN +I   + + C     G + YAR L D + +    S++ + 
Sbjct: 32  QIHSRTIKTGI-----ICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMF 86

Query: 116 SGYMVHGFVEKAMDLFQVM----KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS--- 168
            GY      +  + L+  M     +P   T+  +  G  ++      L L RE+      
Sbjct: 87  KGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRS----VALQLGRELHCHVVK 142

Query: 169 -GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-------------NRYDRNIYVATA 214
            G+  N    +++ +++S    +   + I   + K             NR  +++   TA
Sbjct: 143 YGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTA 202

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           I+  +  TG +  A++ F +   R  + WTA+I  Y       +A+ LF EM  + I+PD
Sbjct: 203 IVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPD 262

Query: 275 PVTFTAVLSACAHSGLVDKA-W------------DIF--NAMSGQYGIQPSVEHYACMVG 319
             T  +VL+ACA  G ++   W            D F  NA+   Y    +VE    +  
Sbjct: 263 EFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFN 322

Query: 320 VLSRARRIS---------------EATEFVSKM---PVKPSAKVWGALLYGASISGDVEL 361
            L +  + +               EA    S+M    V P    +  +L   + +G V+ 
Sbjct: 323 TLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDE 382

Query: 362 GKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           GK     +     IEP N  +Y  M +L  +AG   EA  + + M
Sbjct: 383 GKKFFASMTARHGIEP-NIAHYGCMVDLLGKAGHLKEAHEIIKNM 426


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 262/468 (55%), Gaps = 37/468 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +VSWN+MI G +Q G  EE  A F +ML+   + P  VT++ VL AC    D+  
Sbjct: 307 MRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV-PTRVTMMGVLLACANLGDLER 365

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  + +  +  ++ + N+LI MY+KC  +D A ++ + + +K  V           
Sbjct: 366 GWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNV----------- 413

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWNA+I G  QN   +  L+L   MQ+ G++ +  T+  +
Sbjct: 414 --------------------TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGV 453

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  + FS  +  K IHG AV+   D N++V+TA++D YAK G +  A+++FD  + R +
Sbjct: 454 ITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHV 513

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I  Y  HG   + + LFNEM    ++P+ +TF +V+SAC+HSG V++   +F +
Sbjct: 514 ITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKS 573

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P+++HY+ MV +L RA ++ +A  F+ +MP+KP   V GA+L    I  +VE
Sbjct: 574 MQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVE 633

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     LF+++P+  G ++++AN+Y+    WD+  +VR  M++ GL K PG SW+E  
Sbjct: 634 LGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELR 693

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL----LDEVEEE 464
             + +F +  T+  +S++IY  LE L   ++  GYV     + +VEE+
Sbjct: 694 NEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEED 741



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 175/354 (49%), Gaps = 35/354 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V ++ M+ GY++     +    F  M+   V    G     +LQ CG++ D+  G E+H 
Sbjct: 111 VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVG-DYACLLQLCGENLDLKKGREIHG 169

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +I +  + +L++  A++ +YAKC  +D A  + + M  KD VS++ +++GY  +G  ++
Sbjct: 170 LIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKR 229

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A                               L LV +MQ +G +P++VT+ SI    + 
Sbjct: 230 A-------------------------------LQLVLQMQEAGQKPDSVTLVSILPAVAD 258

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L+ G+ IHGYA ++ ++  + V  A++D Y K G    A+ VF   + ++++ W  +
Sbjct: 259 MKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTM 318

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I   A +G++ +A + F +ML+ G  P  VT   VL ACA+ G +++ W +   +  +  
Sbjct: 319 IDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLD-KLK 377

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  +V     ++ + S+ +R+  A    + +  + +   W A++ G + +G V+
Sbjct: 378 LDSNVSVMNSLISMYSKCKRVDIAASIFNNL--EKTNVTWNAMILGYAQNGCVK 429



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +IS +   G   +A  +F+ ++      ++ ++ G  +N+     L     M    VR
Sbjct: 83  TKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVR 142

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
                 + +  L     +LK G+EIHG  + N ++ N++V TA++  YAK   +  A ++
Sbjct: 143 LVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKM 202

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           F+R + + L+ WT +++ YA +G A +A+ L  +M   G +PD VT  ++L A A
Sbjct: 203 FERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVA 257


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 253/447 (56%), Gaps = 2/447 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+++  Y++ G + E   L+R+      +  +  +   VL  C +  ++  
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLD-MGFNAFSFAGVLILCVKLKELQL 213

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH  V+ +    +L + ++++  Y+KCG +  AR L DEM  KD  +++ I+SGY  
Sbjct: 214 AKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAK 273

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A +LF  M      +W+A+ISG  +N+     LD   +M   G+ P   T SS 
Sbjct: 274 WGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSC 333

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS- 239
               +  + LK GK++HGY ++  +  N  V +++ID Y+K G L  +  VF     +  
Sbjct: 334 LCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQD 393

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++W  +ISA A +G   KA+ +FN+M+ +G++PD +TF  +LSAC+HSGLV +    F 
Sbjct: 394 VVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFK 453

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           AM+  +G+ P  EHYAC++ +L RA    E    +  M  KP  +VW ALL    I  ++
Sbjct: 454 AMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNI 513

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+ V + + E++P+++  Y+ +A+LY+  G+W+  ++VRE M E  + K  G SWI+ 
Sbjct: 514 ELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDV 573

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERL 446
                SF+A D      E+IYL+LE+L
Sbjct: 574 GNKTHSFIASDRLHPLKEEIYLLLEQL 600



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 188/403 (46%), Gaps = 13/403 (3%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
            S++   SQG   E    L R +    +  P G+  V +L+ C ++     G  VH  + 
Sbjct: 32  QSLLDLSSQGRLPEALSYLDR-LAQRGIRLPTGI-FVDLLRLCAKAKYFKGGKCVHLHLK 89

Query: 70  ESHIKMDLWI-CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +  K    I  N LIGMY +CG    AR + D+MS ++  S++ +++GY   G V  A 
Sbjct: 90  HTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNAR 149

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M    + +WN ++    +       + L R+ +   +  NA + + +  L     
Sbjct: 150 KLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLK 209

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L+  K++HG  +   +  N+ ++++I+D Y+K G +  A+ +FD    + +  WT I+S
Sbjct: 210 ELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVS 269

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA  GD + A  LF++M     + +PV+++A++S  A + L  +A D F  M  ++GI 
Sbjct: 270 GYAKWGDMNSASELFHQM----PEKNPVSWSALISGYARNSLGHEALDYFTKMM-KFGIN 324

Query: 309 PSVEHYA---CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           P    ++   C    ++  +   +   ++ +   + +  V  +L+   S  G +E     
Sbjct: 325 PEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEAS--C 382

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           C        ++   +  M +  +Q G  ++A ++   M ESGL
Sbjct: 383 CVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 266/476 (55%), Gaps = 42/476 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
           + KRDIVSW SMI GY   G   +  +LF+++L     +   +  D + +VSV+ AC + 
Sbjct: 137 IPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS--LDYARALLDEMSDKDEVSYSA 113
                   +H+FVI+      + + N L+  YAK G   +  AR + D++ DKD VSY++
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           I+S Y   G   +A ++F+ + +  + T+NA+                            
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI---------------------------- 288

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T+S++    SH   L+ GK IH   ++   + ++ V T+IID Y K G +  A++ FD
Sbjct: 289 --TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R K +++  WTA+I+ Y  HG A+KA+ LF  M+++G++P+ +TF +VL+AC+H+GL  +
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            W  FNAM G++G++P +EHY CMV +L RA  + +A + + +M +KP + +W +LL   
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAAC 466

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I  +VEL +     LFE++  N G Y++++++Y+ AGRW + +RVR  MK  GL K PG
Sbjct: 467 RIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPG 526

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            S +E +G +  F+  D    + E+IY  L  L   + E GYV     +  +V+EE
Sbjct: 527 FSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 171/360 (47%), Gaps = 31/360 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K D+ SWNS+IA  ++ G   E    F  M     L P   +    ++AC    DI  
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSM-RKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H        + D+++ +ALI MY+ CG L+ AR + DE+  +D VS++++I GY +
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDL 154

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G    A+ LF+ +              LV  N  +  + L           +++ + S+
Sbjct: 155 NGNALDAVSLFKDL--------------LVDENDDDDAMFL-----------DSMGLVSV 189

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK--TGFLHGAQRVFDRFKGR 238
            S  S        + IH + +K  +DR + V   ++D YAK   G +  A+++FD+   +
Sbjct: 190 ISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK 249

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDI 297
             + + +I+S YA  G +++A  +F  ++ N +   + +T + VL A +HSG +     I
Sbjct: 250 DRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCI 309

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            + +  + G++  V     ++ +  +  R+  A +   +M  K + + W A++ G  + G
Sbjct: 310 HDQVI-RMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-NVRSWTAMIAGYGMHG 367



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 60/325 (18%)

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPN----AVTISSIFSLFSHFSNLKGGKEI 196
           +WN+VI+ L ++      L     M+   + P        I +  SLF  FS    GK+ 
Sbjct: 43  SWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS----GKQT 98

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H  A    Y  +I+V++A+I  Y+  G L  A++VFD    R ++ WT++I  Y  +G+A
Sbjct: 99  HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNA 158

Query: 257 SKAVSLFNEML------NNGIQPDPVTFTAVLSACA-----------HSGLVDKAWD--- 296
             AVSLF ++L      ++ +  D +   +V+SAC+           HS ++ + +D   
Sbjct: 159 LDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGV 218

Query: 297 -IFNAMSGQYG-----------------IQPSVEHYACMVGVLSRARRISEATE----FV 334
            + N +   Y                  +      Y  ++ V +++   +EA E     V
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAG 391
               V  +A     +L   S SG + +GK + D +  +  E+    G  II  ++Y + G
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII--DMYCKCG 336

Query: 392 RWDEADRVREQMKESGLAKIPGRSW 416
           R + A +  ++MK   +     RSW
Sbjct: 337 RVETARKAFDRMKNKNV-----RSW 356


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 256/466 (54%), Gaps = 40/466 (8%)

Query: 29  FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
           FR  L+S   +PD  +V S LQA  +      G E+H +++ S++  D+++C +L+ MY 
Sbjct: 6   FRS-LHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYV 64

Query: 89  KCGSLDYARALLDEMSDK-----------------------------------DEVSYSA 113
           K   L+ A+A+L    +K                                   D V+++ 
Sbjct: 65  KNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNG 124

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASG 169
           ++SGY + G +++A+ +   +K  G++    +W A+ISG  QN ++   L +  +MQA  
Sbjct: 125 LVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAEN 184

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           V+PN+ TI S+    +  S LK G+E+H +++K  +  +IYVATA+ID Y++ G L  A 
Sbjct: 185 VKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAY 244

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            VF++ + ++L  W  ++  YA H    + + L+++M    I+PD +TFTA+LSAC +SG
Sbjct: 245 NVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSG 304

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           LVD+ W  F++M   Y I P++EHY CMV +L ++  + EA+ F+  MP+KP A +WGAL
Sbjct: 305 LVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGAL 364

Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           L    I  +++L +     LF++EP N+ NY++M NLYS   RW   +R++  M    + 
Sbjct: 365 LASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVLAMK 424

Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             P  SW + +  +  F  +     +  +IY  L +L+  +R+ GY
Sbjct: 425 IPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGY 470



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 134/257 (52%), Gaps = 9/257 (3%)

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           VL   R + + G +P++ +++S           K GKEIHGY +++  + ++YV T+++D
Sbjct: 2   VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y K   L  AQ V  R K +++  W ++IS Y+  G   +AV L N+M+  GI PD VT
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           +  ++S  +  G +D+A  I N +    GI P+V  +  ++   S+  +  +A +  S+M
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSS-GITPNVVSWTALISGCSQNEKYMDALKIFSQM 180

Query: 338 P---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAG 391
               VKP++    +LL   +    ++ G+ +  H F ++     +  +   + ++YS+AG
Sbjct: 181 QAENVKPNSTTICSLLCACAGPSLLKKGEEL--HCFSMKLGFVDDIYVATALIDMYSEAG 238

Query: 392 RWDEADRVREQMKESGL 408
           +   A  V  +++E  L
Sbjct: 239 KLKVAYNVFNKIQEKTL 255



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 73/294 (24%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--------------------------- 37
           D+V+WN +++GYS  G  +E   +   + +S +                           
Sbjct: 118 DLVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIF 177

Query: 38  -------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                  ++P+  T+ S+L AC   S +  G E+H F ++     D+++  ALI MY++ 
Sbjct: 178 SQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEA 237

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G L  A  + +++ +K    ++ ++ GY +H   E+ M L+  M+               
Sbjct: 238 GKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRE-------------- 283

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
              RH              +RP+A+T +++ S   +   +  G +   Y    + D NI 
Sbjct: 284 ---RH--------------IRPDAITFTALLSACKNSGLVDEGWK---YFDSMQEDYNIV 323

Query: 211 VA----TAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGDASKA 259
                   ++D   K+GFL  A    +    +    IW A++++   H +   A
Sbjct: 324 PTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGALLASCKIHKNIKLA 377



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++ +  WN M+ GY+     EE   L+ +M    + RPD +T  ++L AC  S  +  
Sbjct: 250 IQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHI-RPDAITFTALLSACKNSGLVDE 308

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G +  + + E +     ++ + C  ++ +  K G LD A   ++ M  K + S + A+++
Sbjct: 309 GWKYFDSMQEDYNIVPTIEHYCC--MVDLLGKSGFLDEASHFIETMPIKPDASIWGALLA 366

Query: 117 GYMVHGFVEKA 127
              +H  ++ A
Sbjct: 367 SCKIHKNIKLA 377


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 254/469 (54%), Gaps = 40/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWNS+I+G+S+   +    A +       V +P+ VT++S++ AC  + D   
Sbjct: 100 MPHKDLVSWNSLISGFSRC-LHMSLTAFYTMKFEMSV-KPNEVTILSMISACSGALDA-- 155

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F I+    +++ + N+LI MY K G L                           
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLT-------------------------- 189

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A  LF+ +  P   +WN++I+  V N      +D   +M+  G+  +  TI ++
Sbjct: 190 -----SACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILAL 244

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                H    K  + IHG      +   I +ATA++DTYAK G L  +  VF        
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+++ YAAHG   +A+ LF  M N G++PD VTFT +LSAC+HSGLV++    FN 
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNV 364

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI+P V+HY+CMV +L R   +++A E +  MP++P+A VWGALL    + G++E
Sbjct: 365 MSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIE 424

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V +HL  +EP +  NYI+++N+YS +  W +A +VR  +KE GL + PG S IE  
Sbjct: 425 LGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYG 484

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
                F   D S  ++E+IY  LE LLG +R+ GY      +L +VEEE
Sbjct: 485 NKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEE 533



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 166/400 (41%), Gaps = 72/400 (18%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+ + V ++L A      I    E+H  V +S +  D +I + L+  Y K G  + A  L
Sbjct: 38  PEAI-VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKL 96

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+M  KD VS++++ISG+     +  ++  F  MK                        
Sbjct: 97  FDDMPHKDLVSWNSLISGF--SRCLHMSLTAFYTMK------------------------ 130

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
               EM    V+PN VTI S+ S  S    L  GK IHG+ +K      + VA ++I+ Y
Sbjct: 131 ---FEMS---VKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLINMY 182

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K+G L  A R+F+     + + W +II+A   +G A + +  FN+M   GI+ D  T  
Sbjct: 183 GKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 280 AVLSACAHSGLVDKAWDIFNAM-------------------------SGQYGI------Q 308
           A+L AC H G+   A  I   M                         S  YG+       
Sbjct: 243 ALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFA 302

Query: 309 PSVEHYACMVGVLSR--ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF-- 364
             V   A + G  +    R   +  E ++   ++P    +  LL   S SG V  GK   
Sbjct: 303 DRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYF 362

Query: 365 -VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            V   ++ IEP    +Y  M +L  + G  ++A  V + M
Sbjct: 363 NVMSEVYGIEPR-VDHYSCMVDLLGRCGLLNDAYEVIQNM 401


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 264/456 (57%), Gaps = 34/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++++++S+N+MI GYS      E   LF EM    +  P  +T VS+L        +  
Sbjct: 392 MAEQNVISYNAMIEGYSSQEKLSEALELFHEM-RVRLFPPSLLTFVSLLGVSASLFALEL 450

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H  +I+  + +DL+  +ALI +Y+KC                              
Sbjct: 451 SKQIHGLIIKFGVSLDLFAGSALIDVYSKCS----------------------------- 481

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             +V+ A  +F+ M    +  WNA+  G  Q+  +E  L L   +Q S  +PN  T +++
Sbjct: 482 --YVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAAL 539

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S+ ++L+ G++ H   VK   D   +V  A++D YAK G +  A+++F+    R +
Sbjct: 540 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 599

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++IS +A HG+A +A+ +F EM+  GIQP+ VTF AVLSAC+H+G V+   + FN+
Sbjct: 600 VCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNS 659

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M G +GI+P  EHYAC+V +L R+ ++ EA EF+ KMP++P+A VW +LL    I+G+VE
Sbjct: 660 MPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 718

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK+  +     +P+++G+YI+++N+++  G W +  +VR++M  S + K PGRSWIE +
Sbjct: 719 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 778

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F+A+DT+  +++ I  +L+ L+  ++  GYV
Sbjct: 779 NKVNVFIARDTTHREAD-IGSVLDILIQHIKGAGYV 813



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 207/449 (46%), Gaps = 79/449 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++++W+SM++ YSQ G+ EE   +F ++       P+   + SV++AC Q   +  
Sbjct: 88  MPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK 147

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H FV+ S    D+++  +LI  Y+K G+++ AR + D++S+K  V+++ II+GY  
Sbjct: 148 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 207

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                               R    L+L  +M+ + V P+   +SS+
Sbjct: 208 CG-------------------------------RSAVSLELFAQMRETNVVPDRYVVSSV 236

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+GGK+IH Y ++   + ++ V   +ID Y K   +   +++FD+   +++
Sbjct: 237 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 296

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           I WT +IS Y  +    +A+ LF EM   G +PD    T+VL++C               
Sbjct: 297 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAY 356

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                               A S L+  A  +F+ M+ Q     +V  Y  M+   S   
Sbjct: 357 TIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQ-----NVISYNAMIEGYSSQE 411

Query: 326 RISEATEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE---NTGN 379
           ++SEA E   +M V+   PS   + +LL  ++    +EL K +   + +         G+
Sbjct: 412 KLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGS 471

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGL 408
            +I  ++YS+     +A  V E+M E  +
Sbjct: 472 ALI--DVYSKCSYVKDARHVFEEMNEKDI 498



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 157/320 (49%), Gaps = 32/320 (10%)

Query: 33  LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92
           L  P LRP      ++LQ     + I+    +H  +I S ++ D ++ N LI + +K   
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 77

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           +D AR + D+M  K+ +++S+++S Y   G+ E+A+ +F                     
Sbjct: 78  VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVF--------------------- 116

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
                 +DL R+   SG  PN   ++S+    +    ++ G ++HG+ V++ +D+++YV 
Sbjct: 117 ------VDLQRK---SGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVG 167

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
           T++ID Y+K G +  A+ VFD+   ++ + WT II+ Y   G ++ ++ LF +M    + 
Sbjct: 168 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 227

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           PD    ++VLSAC+    ++    I +A   + G +  V     ++   ++  R+    +
Sbjct: 228 PDRYVVSSVLSACSMLEFLEGGKQI-HAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 333 FVSKMPVKPSAKVWGALLYG 352
              +M VK +   W  ++ G
Sbjct: 287 LFDQMVVK-NIISWTTMISG 305


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 258/451 (57%), Gaps = 5/451 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  ++  + +MI G+   G   +  +L+  M+++ VL PD   + SVL+AC    D+  
Sbjct: 87  VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVL-PDNYVITSVLKAC----DLKV 141

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H  V++        +   ++ +Y K G L  A+ + DEM D+D V+ + +I+ Y  
Sbjct: 142 CREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSE 201

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF+++A++LFQ +K      W A+I GLV+N      L+L REMQ   V  N  T   +
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+ G+ +H +    R + + +V  A+I+ Y++ G ++ A+RVF   + + +
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I +  +IS  A HG + +A++ F +M+N G +P+ VT  A+L+AC+H GL+D   ++FN+
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + ++P +EHY C+V +L R  R+ EA  F+  +P++P   + G LL    I G++E
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ +   LFE E  ++G Y++++NLY+ +G+W E+  +RE M++SG+ K PG S IE  
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
             +  F+  D +    E IY  L+ L  ++R
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILR 532



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 179/422 (42%), Gaps = 65/422 (15%)

Query: 29  FREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           FR   +S  LR     T++SVL++C    +I     +H  +I +    D ++   LI + 
Sbjct: 15  FRRDPDSNTLRLSRRKTLISVLRSC---KNIAHVPSIHAKIIRTFHDQDAFVVFELIRVC 71

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           +   S+DYA  +   +S+ +   Y+A+I G++  G     + L+  M    +   N VI+
Sbjct: 72  STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSI----FSLFSHFSNLKGGKEIHGYAVKN 203
            +++       L + RE+ A  ++    +  S+      ++     L   K++       
Sbjct: 132 SVLK----ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKM----FDE 183

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             DR+   AT +I+ Y++ GF+  A  +F   K +  + WTA+I     + + +KA+ LF
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243

Query: 264 NEMLNNGIQPDPVTFTAVLSACA-----------HS------------------------ 288
            EM    +  +  T   VLSAC+           HS                        
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRC 303

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL----SRARRISEATEFVSKMPVKPSAK 344
           G +++A  +F  M  +      V  Y  M+  L    +    I+E  + V++   +P+  
Sbjct: 304 GDINEARRVFRVMRDK-----DVISYNTMISGLAMHGASVEAINEFRDMVNR-GFRPNQV 357

Query: 345 VWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
              ALL   S  G +++G  V + +   F +EP+   +Y  + +L  + GR +EA R  E
Sbjct: 358 TLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQ-IEHYGCIVDLLGRVGRLEEAYRFIE 416

Query: 402 QM 403
            +
Sbjct: 417 NI 418


>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/422 (34%), Positives = 253/422 (59%), Gaps = 6/422 (1%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            +S++D++SWN+++  +++ G       L   ML   + RPD +T+++++Q     S +  
Sbjct: 1343 ISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGI-RPDSITILTIIQYYAAVSRVKK 1401

Query: 61   GMEVHNFVIESHI---KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
              E H++ I   +        + N ++  YAKCG++ YA  +   +S+K + V+ +++IS
Sbjct: 1402 VKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMIS 1461

Query: 117  GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            GY+     + A  +F  M    L+TWN ++    +N+  +  L L  E+Q  G++P+ VT
Sbjct: 1462 GYVTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVT 1521

Query: 177  ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            I SI    +H +++   ++ HGY ++  ++ ++ +  A ID Y+K G + GA ++F    
Sbjct: 1522 IMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKLFLSSP 1580

Query: 237  GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
             + L+++TA++  +A HG   +A+ +F+ ML  G++PD V  TAVL AC+H+GLVD+ W 
Sbjct: 1581 QKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWK 1640

Query: 297  IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            IFN++   +G QP++E YAC+V +L+R  RI +A  FV++MP++ +A +WG LL      
Sbjct: 1641 IFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTH 1700

Query: 357  GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
             +VELG+ V DHLF+IE +N GNY++M+NLY+   RWD    +R  M+   L K  G SW
Sbjct: 1701 HEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSW 1760

Query: 417  IE 418
            IE
Sbjct: 1761 IE 1762



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 205/466 (43%), Gaps = 101/466 (21%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M  RD+VSWN++IAGY+  G + +   LF E ++   ++PD VT+VSVL AC    ++  
Sbjct: 1240 MKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQV 1299

Query: 61   GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
               +H ++I    ++ D  + NAL+  YAKC   +Y +A                     
Sbjct: 1300 AKGIHGYIIRHPGLREDTSVGNALLSFYAKC---NYTQA--------------------- 1335

Query: 120  VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                   A+  F ++ R  L +WNA++    ++     +++L+  M   G+RP+++TI +
Sbjct: 1336 -------ALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILT 1388

Query: 180  IFSLFSHFSNLKGGKEIHGYAVKN---RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF- 235
            I   ++  S +K  KE H Y+++    + D    +   ++D YAK G +  A  +F    
Sbjct: 1389 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLS 1448

Query: 236  KGRSLIIWTAIISAY---AAHGDA----------------------------SKAVSLFN 264
            + R+++   ++IS Y   ++H DA                             +A+SLF+
Sbjct: 1449 EKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFH 1508

Query: 265  EMLNNGIQPDPVTFTAVLSACAH----------SGLVDKAW-----------DIFNAMSG 303
            E+   G++PD VT  ++L ACAH           G V +A            D+++    
Sbjct: 1509 ELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGS 1568

Query: 304  QYGI--------QPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
             +G         Q  +  +  MVG  +      EA    S M    VKP   +  A+L+ 
Sbjct: 1569 VFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFA 1628

Query: 353  ASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEA 396
             S +G V+ G  + + + ++         Y  + +L ++ GR  +A
Sbjct: 1629 CSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDA 1674



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 36/295 (12%)

Query: 4    RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSDIVF 60
            +D+VSWN++IAG+S+  F EE   LF  ML  P+ +P+  T+ S+L  C    +++   +
Sbjct: 1138 KDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPI-QPNYATIASILPVCASLEENAGYRY 1196

Query: 61   GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G EVH  V+    +  D+ + N+L+  Y +   ++ A  L   M  +D VS++AII+GY 
Sbjct: 1197 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYA 1256

Query: 120  VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             +G   KA++LF                                 +    ++P++VT+ S
Sbjct: 1257 SNGEWLKALELFSEF------------------------------ISLETIKPDSVTLVS 1286

Query: 180  IFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +    +H  NL+  K IHGY +++   R +  V  A++  YAK  +   A + F     +
Sbjct: 1287 VLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRK 1346

Query: 239  SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             LI W AI+ A+   G  +  V+L + ML  GI+PD +T   ++   A    V K
Sbjct: 1347 DLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKK 1401



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 148/294 (50%), Gaps = 39/294 (13%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
            M +RD V WN +++G +    +E E   LFR M      +P+ VT+  VL  C +  +  
Sbjct: 1032 MDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLREDA 1091

Query: 60   FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGY 118
             G  VH++VI+S ++      NALI MYAKCG +   A A  + +  KD VS++A+I+G+
Sbjct: 1092 -GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGF 1150

Query: 119  MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              + F E+A  LF  M           + G +Q                    PN  TI+
Sbjct: 1151 SENKFTEEAFKLFHAM-----------LKGPIQ--------------------PNYATIA 1179

Query: 179  SIFSLFSHFSNLKG---GKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            SI  + +      G   GKE+H + ++      ++ V  +++  Y +   +  A+ +F  
Sbjct: 1180 SILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRN 1239

Query: 235  FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAH 287
             K R L+ W AII+ YA++G+  KA+ LF+E ++   I+PD VT  +VL ACAH
Sbjct: 1240 MKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 1293



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 38/270 (14%)

Query: 22   YEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE-SHIKMDLWI 79
            ++E  +LF E +   V  +P+G  + ++L++C   S I FG  +H + ++  H+     +
Sbjct: 950  HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQS-L 1008

Query: 80   CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
            C  L+ +YAK G+LDY   L  EM  +D V                              
Sbjct: 1009 CKGLLNLYAKSGALDYCNKLFGEMDQRDPV------------------------------ 1038

Query: 140  STWNAVISGLVQNNRHEA-VLDLVREMQ-ASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
              WN V+SGL     HEA V+ L R M   +  +PN+VTI+ +  + +       GK +H
Sbjct: 1039 -IWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVH 1096

Query: 198  GYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
             Y +K+  + +     A+I  YAK G +   A   F+R + + ++ W A+I+ ++ +   
Sbjct: 1097 SYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFT 1156

Query: 257  SKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +A  LF+ ML   IQP+  T  ++L  CA
Sbjct: 1157 EEAFKLFHAMLKGPIQPNYATIASILPVCA 1186



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 146  ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
            +S L++ +     L L R   + G +PN   ++++       S ++ G  +HGYA+K  +
Sbjct: 943  LSKLMEKHDEALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGH 1002

Query: 206  DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA-HGDASKAVSLFN 264
                 +   +++ YAK+G L    ++F     R  +IW  ++S  A      ++ + LF 
Sbjct: 1003 VSCQSLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFR 1062

Query: 265  EM-LNNGIQPDPVTFTAVLSACA 286
             M + N  +P+ VT   VL  CA
Sbjct: 1063 AMHMVNEAKPNSVTIAIVLPVCA 1085


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 254/469 (54%), Gaps = 40/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWNS+I+G+S+   +    A +       V +P+ VT++S++ AC  + D   
Sbjct: 100 MPHKDLVSWNSLISGFSRC-LHMSLTAFYTMKFEMSV-KPNEVTILSMISACNGALDA-- 155

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F I+    +++ + N+LI MY K G L                           
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLT-------------------------- 189

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A  LF+ +  P   +WN++I+  V N      +D   +M+  G+  +  TI ++
Sbjct: 190 -----SACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILAL 244

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                H    K  + IHG      +   I +ATA++DTYAK G L  +  VF        
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+++ YAAHG   +A+ LF  M N G++PD VTFT +LSAC+HSGLV++    FN 
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNV 364

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI+P V+HY+CMV +L R   +++A E +  MP++P+A VWGALL    + G++E
Sbjct: 365 MSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIE 424

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V +HL  +EP +  NYI+++N+YS +  W +A +VR  +KE GL + PG S IE  
Sbjct: 425 LGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYG 484

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
                F   D S  ++E+IY  LE LLG +R+ GY      +L +VEEE
Sbjct: 485 NKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEE 533



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 166/400 (41%), Gaps = 72/400 (18%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+ + V ++L A      I    E+H  V +S +  D +I + L+  Y K G  + A  L
Sbjct: 38  PEAI-VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKL 96

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+M  KD VS++++ISG+     +  ++  F  MK                        
Sbjct: 97  FDDMPHKDLVSWNSLISGF--SRCLHMSLTAFYTMK------------------------ 130

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
               EM    V+PN VTI S+ S  +    L  GK IHG+ +K      + VA ++I+ Y
Sbjct: 131 ---FEMS---VKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLINMY 182

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K+G L  A R+F+     + + W +II+A   +G A + +  FN+M   GI+ D  T  
Sbjct: 183 GKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 280 AVLSACAHSGLVDKAWDIFNAM-------------------------SGQYGI------Q 308
           A+L AC H G+   A  I   M                         S  YG+       
Sbjct: 243 ALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFA 302

Query: 309 PSVEHYACMVGVLSR--ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF-- 364
             V   A + G  +    R   +  E ++   ++P    +  LL   S SG V  GK   
Sbjct: 303 DRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYF 362

Query: 365 -VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            V   ++ IEP    +Y  M +L  + G  ++A  V + M
Sbjct: 363 NVMSEVYGIEPR-VDHYSCMVDLLGRCGLLNDAYEVIQNM 401


>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
 gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
          Length = 438

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 254/433 (58%), Gaps = 12/433 (2%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD +T   + +A  +      G+ +H  VI+S  ++D ++ N+LI MY  CG + YAR +
Sbjct: 8   PDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARKV 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D    K+ VS+++++ GY   G+++ A  LF +M    + +W+ +I G  ++  +   +
Sbjct: 68  FDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAM 127

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
            +  +M+ SG + N VT+ S+    +H   L  G+ +H Y V N ++ N+ + T++ID Y
Sbjct: 128 AVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMY 187

Query: 220 AKTGFLHGAQRVFDRFKGRSL-----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           AK G     +  F  F+G SL     +IW A+I   A HG   +++ L+ EM   GI+PD
Sbjct: 188 AKCG---AVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPD 244

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            +TF  +LSACAH GLV +A  +F  + G+ G+ P  EHYACMV V++RA +++EA +F+
Sbjct: 245 EITFLCLLSACAHGGLVKQASYVFEGL-GKNGMTPKTEHYACMVDVMARAGQVAEAYQFL 303

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
            +MP++P+A + GALL G    G ++L + +   L E++PE+ G Y+ ++N+Y+   RWD
Sbjct: 304 CQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGRRWD 363

Query: 395 EADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           EA  +RE M+  G+ K PG S++E SG    F+A D S   SEQIY +L  ++  M+   
Sbjct: 364 EARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHDKSHPSSEQIYTMLSFIVSQMQ--- 420

Query: 455 YVLLDEVEEESAY 467
           + +L E +E   Y
Sbjct: 421 FGVLKEGQEHCLY 433



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 146/335 (43%), Gaps = 76/335 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ SW+ +I GY++ G Y +  A+F +M  S   + + VT+VSVL AC     +  
Sbjct: 102 MPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGP-KANEVTMVSVLCACAHLGALDK 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS--DKDEVSYSAIISGY 118
           G  +H +++++  +++L +  +LI MYAKCG+++ A A+   +S    D + ++A+I G 
Sbjct: 161 GRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGL 220

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             HG V++++DL+                                EMQ +G++P+ +T  
Sbjct: 221 ATHGLVKESLDLYT-------------------------------EMQIAGIKPDEITFL 249

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            + S  +           HG  VK         A+ + +   K G     +         
Sbjct: 250 CLLSACA-----------HGGLVKQ--------ASYVFEGLGKNGMTPKTEH-------- 282

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
               +  ++   A  G  ++A     +M    ++P      A+LS C + G +D A  I 
Sbjct: 283 ----YACMVDVMARAGQVAEAYQFLCQM---PLEPTASMLGALLSGCMNHGKLDLAELI- 334

Query: 299 NAMSGQYGIQPSVEH---YACMVGVLSRARRISEA 330
               G+  I+   EH   Y  +  V +  RR  EA
Sbjct: 335 ----GKKLIELDPEHDGRYVGLSNVYAIGRRWDEA 365



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 124/283 (43%), Gaps = 44/283 (15%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII-------- 216
           M   G+ P+ +T   +    S     + G  IHG+ +K+ ++ + +VA ++I        
Sbjct: 1   MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60

Query: 217 -----------------------DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
                                  D YAK G+L  A+ +FD    R +  W+ +I  YA  
Sbjct: 61  IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY----GIQP 309
           G+   A+++F +M  +G + + VT  +VL ACAH G +DK       M  QY    G + 
Sbjct: 121 GNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKG-----RMMHQYLVDNGFEL 175

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPS-AKVWGALLYGASISGDVE--LGKFVC 366
           ++     ++ + ++   + EA      + ++ S   +W A++ G +  G V+  L  +  
Sbjct: 176 NLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTE 235

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
             +  I+P+    ++ + +  +  G   +A  V E + ++G+ 
Sbjct: 236 MQIAGIKPDEI-TFLCLLSACAHGGLVKQASYVFEGLGKNGMT 277


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 261/478 (54%), Gaps = 46/478 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V+W++ I+GY+Q G   E   + R+ML+S + +P+ VT++SVL  C     ++ G 
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGCASVGALMHGK 385

Query: 63  EVHNFVIESHIKM-------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           E+H + I+  I +       +  + N LI MYAKC  +D ARA+ D +S K+        
Sbjct: 386 EIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKER------- 438

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVRPN 173
                                  + TW  +I G  Q+      L+L+ EM  +    RPN
Sbjct: 439 ----------------------DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVF 232
           A TIS      +  + L+ GK+IH YA++N+ +   ++V+  +ID YAK G +  A+ VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    ++ + WT++++ Y  HG   +A+ +F+EM   G + D VT   VL AC+HSG++D
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +  + FN M   +G+ P  EHYAC+V +L RA R++ A   + +MP++P   VW A L  
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             I G VELG++  + + E+   + G+Y +++NLY+ AGRW +  R+R  M+  G+ K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLIL----ERL--LGLMREEGYVLLDEVEEE 464
           G SW+E   G  +F   D +   +++IY +L    +R+  +G + E G+ L D  +EE
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEE 774



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 215/458 (46%), Gaps = 59/458 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS  D+VSWNS+I  Y++ G  +    +F  M N    RPD +T+V+VL  C        
Sbjct: 188 MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSL 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F + S +  ++++ N L+ MYAKCG +D A  +   MS KD VS++A+++GY  
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307

Query: 121 HGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            G  E A+ LF+ M+   +     TW+A ISG  Q       L + R+M +SG++PN VT
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAV-------KNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           + S+ S  +    L  GKEIH YA+       KN +     V   +ID YAK   +  A+
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427

Query: 230 RVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT--AVLSAC 285
            +FD    K R ++ WT +I  Y+ HGDA+KA+ L +EM     Q  P  FT    L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487

Query: 286 AHSGL--VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           A      + K    +   + Q  +   V +  C++ + ++   IS+A      M  K   
Sbjct: 488 ASLAALRIGKQIHAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDARLVFDNMMAKNEV 545

Query: 344 KVWGALL--YGASISGDVELGKF--------------------VCDH------------- 368
             W +L+  YG    G+  LG F                     C H             
Sbjct: 546 -TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 369 ---LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
              +F + P    +Y  + +L  +AGR + A R+ E+M
Sbjct: 605 MKTVFGVSP-GPEHYACLVDLLGRAGRLNAALRLIEEM 641



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 185/432 (42%), Gaps = 49/432 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S   +  WNS+I  Y   G   +C  LF  +++S    PD  T   V +ACG+ S +  G
Sbjct: 88  SDAGVYHWNSLIRSYGDNGCANKCLYLF-GLMHSLSWTPDNYTFPFVFKACGEISSVRCG 146

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
              H   + +    ++++ NAL+ MY++C SL  AR + DEMS  D VS+++II  Y   
Sbjct: 147 ESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKL 206

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  + A+++F                               R     G RP+ +T+ ++ 
Sbjct: 207 GKPKVALEMFS------------------------------RMTNEFGCRPDNITLVNVL 236

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +       GK++H +AV +   +N++V   ++D YAK G +  A  VF     + ++
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+++ Y+  G    AV LF +M    I+ D VT++A +S  A  GL  +A  +   M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 302 SGQYGIQP------SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK-------VWGA 348
               GI+P      SV      VG L   + I     +  K P+            V   
Sbjct: 357 LSS-GIKPNEVTLISVLSGCASVGALMHGKEIH---CYAIKYPIDLRKNGHGDENMVINQ 412

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           L+   +    V+  + + D L   E  +   + +M   YSQ G  ++A  +  +M E   
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKE-RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDC 471

Query: 409 AKIPGRSWIECS 420
              P    I C+
Sbjct: 472 QTRPNAFTISCA 483


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 266/471 (56%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSW +MI+ YSQ GF  E   LF EML S    P+  T  ++L +C  S     
Sbjct: 151 MPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDT-EPNHFTFATILTSCYGSLGFET 209

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  I+ + +  +++ ++L+ MYAK G +  A  +   + ++D V+ +AIIS    
Sbjct: 210 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIIS---- 265

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G+ +  +D                          E  L L R++Q  G+  N+VT +S+
Sbjct: 266 -GYAQMGLD--------------------------EEALKLFRQLQIEGMNSNSVTYASV 298

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK++H + +++     + +  ++ID Y+K G +  A+R+FD    R+ 
Sbjct: 299 LTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTC 358

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIF- 298
           I W A++  Y+ HG A + + LF  M   N ++PD +T+ AVLS C+H  L D   +IF 
Sbjct: 359 ISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFY 418

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N ++G+ GI+P + HY C+V +L RA R+ EA +F+ KMP  P+A +WG+LL    +  D
Sbjct: 419 NMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSD 478

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+G  V   L E+EPEN GNY+I++NLY+ AG+W++   +R+ M+E  + K PGRSW+E
Sbjct: 479 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 538

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               + +F A D +  + E++   ++ L    +E+GYV     +L +V+EE
Sbjct: 539 LDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEE 589



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 37/313 (11%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L  C     I  G  VH  +I++     +++   LI +Y KC  L  AR + DEM  K
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQK 154

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS++A+IS Y   GF  +A++LF                                EM 
Sbjct: 155 NVVSWTAMISAYSQRGFAFEALNLFV-------------------------------EML 183

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            S   PN  T ++I +        + G++IH  A+K  Y+ +++V ++++D YAK+G + 
Sbjct: 184 RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRIC 243

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A  VF     R ++  TAIIS YA  G   +A+ LF ++   G+  + VT+ +VL+A +
Sbjct: 244 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 303

Query: 287 HSGLVDKAWDIFNAM--SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
               ++    + + +  SGQY     V     ++ + S+   +  A      MP +    
Sbjct: 304 GLAALNHGKQVHSHVLRSGQYSY---VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS 360

Query: 345 VWGALLYGASISG 357
            W A+L G S  G
Sbjct: 361 -WNAMLVGYSKHG 372


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 259/468 (55%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y+E   LF++M+ + V RPD  T+V+V+ AC QS  I  G +
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACAQSGSIELGRQ 287

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH ++ +     +L I NALI +Y+KCG L+ A  L + +  KD +              
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI-------------- 333

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            +WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 334 -----------------SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376

Query: 184 FSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID YAK G +  A +VF+    +SL 
Sbjct: 377 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A  +  LF+ M   GIQPD +TF  +LSAC+HSG++D    IF  M
Sbjct: 437 SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y + P +EHY CM+ +L  +    EA E ++ M ++P   +W +LL    + G+VEL
Sbjct: 497 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVEL 556

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+   ++L +IEPEN G+Y++++N+Y+ AGRW+E  + R  + + G+ K+PG S IE   
Sbjct: 557 GESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDS 616

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F+  D    ++ +IY +LE +  L+ + G+V     +L E+EEE
Sbjct: 617 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 206/408 (50%), Gaps = 6/408 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + +++ WN+M  G++          L+  M++  +L P+  T   VL++C +S     
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSCAKSKAFKE 152

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++    +DL++  +LI MY + G L+ A  + D+   +D VSY+A+I GY  
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G++E A  LF  +    + +WNA+ISG  +   ++  L+L ++M  + VRP+  T+ ++
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +++ G+++H +   + +  N+ +  A+ID Y+K G L  A  +F+R   + +
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDV 332

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W  +I  Y       +A+ LF EML +G  P+ VT  ++L ACAH G +D    I   
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392

Query: 301 MSGQY-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-- 357
           +  +  G+  +      ++ + ++   I  A +  + + +  S   W A+++G ++ G  
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRA 451

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           D     F       I+P++   ++ + +  S +G  D    +   M +
Sbjct: 452 DASFDLFSRMRKIGIQPDDI-TFVGLLSACSHSGMLDLGRHIFRTMTQ 498



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 33/257 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 87  AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVA-------------------------------TAI 215
               K G++IHG+ +K   D ++YV                                TA+
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           I  YA  G++  AQ++FD    + ++ W A+IS YA  G+  +A+ LF +M+   ++PD 
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            T   V+SACA SG ++    + +     +G   +++    ++ + S+   +  A     
Sbjct: 267 STMVTVVSACAQSGSIELGRQV-HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325

Query: 336 KMPVKPSAKVWGALLYG 352
           ++P K     W  L+ G
Sbjct: 326 RLPYK-DVISWNTLIGG 341


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 263/472 (55%), Gaps = 8/472 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+  DIVSWNS+I GY   G+       F  ML S  L+PD  T+ SVL AC     +  
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL 296

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIISGY 118
           G ++H  ++ + + +   + NALI MYAK G+++ A  +++       + +++++++ GY
Sbjct: 297 GKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G ++ A  +F  +K   +  W A+I G  QN      L L R M   G +PN  T++
Sbjct: 357 FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG- 237
           ++ S+ S  ++L  GK++H  A++     ++ V  A+I  Y+++G +  A+++F+     
Sbjct: 417 AVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSY 476

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R  + WT++I + A HG  ++A+ LF +ML   ++PD +T+  VLSAC H GLV++    
Sbjct: 477 RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSY 536

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN M   + I+P+  HYACM+ +L RA  + EA  F+  MP++P    WG+LL    +  
Sbjct: 537 FNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHK 596

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
            V+L K   + L  I+P N+G Y+ +AN  S  G+W++A +VR+ MK+  + K  G SW+
Sbjct: 597 YVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWV 656

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           +    +  F  +D    + + IY ++ ++   +++ G++     +L ++E+E
Sbjct: 657 QIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQE 708



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 211/467 (45%), Gaps = 73/467 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D VSW +MI GY+  G ++     F  M++S +  P   T  +VL +C  +  +  
Sbjct: 105 IPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGI-SPTQFTFTNVLASCAAAQALDV 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+FV++      + + N+L+ MYAKCG    A+ + D M  KD  +++ +IS +M 
Sbjct: 164 GKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQ 223

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
               + A+ LF  M  P + +WN++I+G          L+    M ++S ++P+  T+ S
Sbjct: 224 FCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGS 283

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD--------------------------------- 206
           + S  ++  +LK GK+IH + V+   D                                 
Sbjct: 284 VLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPS 343

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            N+   T+++D Y K G +  A+ +FD  K R ++ WTA+I  YA +G  S A+ LF  M
Sbjct: 344 LNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLM 403

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF---------------NAMSGQYGIQPSV 311
           +  G +P+  T  AVLS  +    +D    +                NA+   Y    S+
Sbjct: 404 IREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSI 463

Query: 312 E------HYAC----------MVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
           +      ++ C          M+  L++    +EA E   KM    +KP    +  +L  
Sbjct: 464 KDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSA 523

Query: 353 ASISGDVELGKF---VCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
            +  G VE GK    +  ++  IEP  + +Y  M +L  +AG  +EA
Sbjct: 524 CTHVGLVEQGKSYFNLMKNVHNIEP-TSSHYACMIDLLGRAGLLEEA 569



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 168/367 (45%), Gaps = 15/367 (4%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIK-MDLWICNALIGMYAKCGSLDYARALLDEMS 104
           V +LQ+  +S D   G  +H  +I+  ++ + +++ N L+ +Y K GS   A  L DEM 
Sbjct: 16  VHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMP 75

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            K   S++ I+S +   G ++ A  +F  + +P   +W  +I G       ++ +     
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M +SG+ P   T +++ +  +    L  GK++H + VK      + VA ++++ YAK G 
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
              A+ VFDR + +    W  +IS +        A++LF++M +    PD V++ ++++ 
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD----PDIVSWNSIITG 251

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKP 341
             H G   +A + F+ M     ++P       ++   +    +    +    + +  V  
Sbjct: 252 YCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDI 311

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL---YSQAGRWDEADR 398
           +  V  AL+   + SG VE    V   + EI    + N I   +L   Y + G  D A  
Sbjct: 312 AGAVGNALISMYAKSGAVE----VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARA 367

Query: 399 VREQMKE 405
           + + +K 
Sbjct: 368 IFDSLKH 374


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 263/465 (56%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ VSW  +I G  Q   + +   LF +M  + ++  D   + +++  C    D+  
Sbjct: 321 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLISGCFNRMDLCL 379

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI +YAKCG L  A  +   MS++D VS++++I+ Y  
Sbjct: 380 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 439

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISS 179
            G + KA + F  M      TWNA++   +Q+   E  L +   M +   V P+ VT  +
Sbjct: 440 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 499

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G+ VK     N+ VA A I  Y+K G +  AQ++FD   G+ 
Sbjct: 500 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 559

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I+ Y+ HG   +A   F++ML+ G +PD +++ AVLS C+HSGLV +    F+
Sbjct: 560 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 619

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M+  +GI P +EH++CMV +L RA  ++EA + + KMP+KP+A+VWGALL    I G+ 
Sbjct: 620 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 679

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    H+FE++  ++G+Y+++A +YS AG+ D++ +VR+ M++ G+ K PG SW+E 
Sbjct: 680 ELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEV 739

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +  F A D S  +   I   ++ L+  +   GYV  +    E
Sbjct: 740 ENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSE 784



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 210/454 (46%), Gaps = 47/454 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD+VSWN MIA  SQ G   E   L  EM    V R D  T  S L AC +   + +
Sbjct: 220 MAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV-RLDSTTYTSSLTACARLFSLGW 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI S  ++D ++ +ALI +YAKCGS   A+ + + + D++ VS++ +I G + 
Sbjct: 279 GKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA----SGVRPNAVT 176
           +    K+++LF  M+   ++     ++ L+    +   L L R++ +    SG     V 
Sbjct: 339 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 398

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +S+ SL++   +L+  +    +   +  +R+I   T++I  Y++ G +  A+  FD   
Sbjct: 399 SNSLISLYAKCGDLQNAE----FVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMA 454

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAW 295
            R+ I W A++ AY  HG     + +++ ML+   + PD VT+  +   CA  G  +K  
Sbjct: 455 TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG-ANKLG 513

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP----------------- 338
           D     + + G+  +V      + + S+  RISEA +    +                  
Sbjct: 514 DQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQH 573

Query: 339 -----------------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--N 379
                             KP    + A+L G S SG V+ GK   D +  +   + G  +
Sbjct: 574 GMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEH 633

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
           +  M +L  +AG   EA  + ++M     A++ G
Sbjct: 634 FSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 667



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 23/295 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM----------LNSPVLRPDGVTVVSVLQACGQ 54
           ++++ N M+ GY++ G   + + LF  M          L S   RP G  +      C +
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRE 145

Query: 55  SSDIVFGMEVHNFVIESHIKMDLW----ICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110
            +  + G+           K D W    +  AL+ M+ +CG +D+A  L  ++       
Sbjct: 146 LAPQLLGL---------FWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFC 196

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
            +++++GY     ++ A++ F+ M    + +WN +I+ L Q+ R    L LV EM   GV
Sbjct: 197 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 256

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           R ++ T +S  +  +   +L  GK++H   +++    + YVA+A+I+ YAK G    A+R
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           VF+  + R+ + WT +I     +   SK+V LFN+M    +  D      ++S C
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 38  LRPDGVT--VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY 95
           L P  VT  +   L++CG    +     +H  ++   +   +++ N L+  Y  CG+L  
Sbjct: 14  LLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSD 73

Query: 96  ARALLD-EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           AR LL  ++ + + ++++ +++GY   G +  A +LF  M R  +++WN ++S     +R
Sbjct: 74  ARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMS---DTSR 130

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-----------LKGGKEIHGYAVKN 203
                       A G R  A  +  +F  F  + +           ++ G       + +
Sbjct: 131 PAGSW---MSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFS 187

Query: 204 RYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           + +R  I+   +++  YAK   +  A   F+    R ++ W  +I+A +  G   +A+ L
Sbjct: 188 QIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGL 247

Query: 263 FNEMLNNGIQPDPVTFTAVLSACA 286
             EM   G++ D  T+T+ L+ACA
Sbjct: 248 VVEMHRKGVRLDSTTYTSSLTACA 271


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/490 (32%), Positives = 277/490 (56%), Gaps = 45/490 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +D+V+WN +I+GY Q G  E+  A++  +++    L+ D VT+ +++ A  ++ ++ 
Sbjct: 335 MFDKDVVTWNLLISGYVQQGLVED--AIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLK 392

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           FG EV  + I   ++ D+ + +  + MYAKCGS+  A+ + D   +KD + ++ +++ Y 
Sbjct: 393 FGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452

Query: 120 VHGFVEKAMDLFQVMK---------------------------------------RPGLS 140
             G   +A+ LF  M+                                        P L 
Sbjct: 453 ESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLI 512

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W  +++G+VQN   E  +  +R+MQ SG+RPNA +I+   S  ++ ++L  G+ IHGY 
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLASLHFGRSIHGYI 572

Query: 201 VKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           V+N ++  ++ + T+++D YAK G ++ A+RVF       L ++ A+ISAYA +G+  +A
Sbjct: 573 VRNLQHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEA 632

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           ++L+  + + G +PD +TFT++LSAC H G +++A +IF  M  ++G++P +EHY  MV 
Sbjct: 633 ITLYRSLEDMGNKPDNITFTSLLSACNHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVD 692

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           +L+ A     A + + +MP KP A++  +L+   +     EL ++   HL E EPEN+GN
Sbjct: 693 LLASAGETDRALKLIEEMPYKPDARMIQSLVASCNKQHKSELVEYFSRHLLESEPENSGN 752

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG--GLQSFVAKDTSGDKSE 437
           Y+ ++N Y+  G WDE  ++R+ MK  GL K PG SWI+  G  G+  FVA D +  + +
Sbjct: 753 YVTISNAYAVEGSWDEVVKMRDMMKAKGLTKNPGCSWIQIKGEEGVHVFVANDKTHIRKD 812

Query: 438 QIYLILERLL 447
           +I  I+  LL
Sbjct: 813 EIQRIIALLL 822



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 198/404 (49%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    V  P  VTV + L A      +  
Sbjct: 234 IPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGV-EPSRVTVSTCLSASANMGGVAE 292

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + +++D  +  +L+  Y K G ++YA  + D M DKD V           
Sbjct: 293 GKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVV----------- 341

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    E  + + + M+   ++ + VT+S++
Sbjct: 342 --------------------TWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTL 381

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GKE+  Y +++  + +I +A+  +D YAK G +  A++VFD    + L
Sbjct: 382 MSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDL 441

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF EM    + P+ +T+  ++ +   +G V++A ++F  
Sbjct: 442 ILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQ 501

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  + +     EA  F+ KM    ++P+A      L  ++   
Sbjct: 502 MQSS-GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLA 560

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            +  G+ +  ++      ++   I   + ++Y++ G  ++A+RV
Sbjct: 561 SLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCGDINKAERV 604



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 195/414 (47%), Gaps = 49/414 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIF-PDNFVVPNVCKACGALQWSRFGRG 194

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V+++ ++  +++ ++L  MY KCG LD AR + DE+ +++ V+++A++ GY+ +G 
Sbjct: 195 VHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNGM 254

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A                               + L+ +M+  GV P+ VT+S+  S 
Sbjct: 255 NEEA-------------------------------IRLLSDMRKDGVEPSRVTVSTCLSA 283

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   +  GK+ H  A+ N  + +  + T++++ Y K G +  A+ +FDR   + ++ W
Sbjct: 284 SANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTW 343

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             +IS Y   G    A+ +   M    ++ D VT + ++SA A +     G   + + I 
Sbjct: 344 NLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIR 403

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           +++     +           G +  A+++ ++T       V+    +W  LL   + SG 
Sbjct: 404 HSLESDIVLASITMDMYAKCGSIVDAKKVFDST-------VEKDLILWNTLLAAYAESGL 456

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
             E  +   +   E  P N  T N II++ L  + G  +EA  +  QM+ SG++
Sbjct: 457 SGEALRLFYEMQLESVPPNVITWNLIILSLL--RNGEVNEAKEMFLQMQSSGIS 508



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 153/352 (43%), Gaps = 47/352 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  ++++      + +I   L+  YAKC +L+ A+ L  ++  
Sbjct: 76  ILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRV 135

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII      G  E A+                   G V             EM
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGAL------------------MGFV-------------EM 164

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             + + P+   + ++          + G+ +HGY VK   +  ++VA+++ D Y K G L
Sbjct: 165 LENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVL 224

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    R+++ W A++  Y  +G   +A+ L ++M  +G++P  VT +  LSA 
Sbjct: 225 DDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSAS 284

Query: 286 AHSGLV-----DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G V       A  I N +     +  S+ ++ C VG++       E  E +      
Sbjct: 285 ANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLI-------EYAEMIFDRMFD 337

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                W  L+ G    G VE   ++C  L  +E     + + ++ L S A R
Sbjct: 338 KDVVTWNLLISGYVQQGLVEDAIYMC-QLMRLENLKY-DCVTLSTLMSAAAR 387



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 12/222 (5%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N   +  L LV +M    +R        I     +  +L  GK+I
Sbjct: 33  PSSTSYFHRVSSLCKNGEIKEALSLVTKMDFRNLRIGPEIYGEILQGCVYERDLCTGKQI 92

Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y  N Y+ T ++  YAK   L  AQ +F + + R++  W AII      G
Sbjct: 93  HARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIG 152

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
               A+  F EML N I PD      V  AC         W  F      Y ++  +E  
Sbjct: 153 LCEGALMGFVEMLENEIFPDNFVVPNVCKACGA-----LQWSRFGRGVHGYVVKAGLEDC 207

Query: 315 ACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYG 352
             +   L+    +   + +A +   ++P + +   W ALL G
Sbjct: 208 VFVASSLADMYGKCGVLDDARKVFDEIPER-NVVAWNALLVG 248


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 260/458 (56%), Gaps = 34/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+MI+ + Q G  +E   LF EM    ++  D VTV ++L A     +   
Sbjct: 351 MPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLM-VDSVTVTALLSAASDLRNPDI 409

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H +++ + I+ +  + + LI MYAK G ++ A+ +        E S+S        
Sbjct: 410 GKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVF-------EKSFS-------- 453

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                              +TWN+++SG  QN   +    ++R+M    V PN VT++SI
Sbjct: 454 --------------HERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASI 499

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    +  GK++HG++++N  D+N++VATA+ID Y+K+G +  A+ VF +   +S+
Sbjct: 500 LPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSI 559

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + ++ +I  Y  HG    A+ +F+ M  +GIQPD VT  AVLSAC+++GLVD+   IF +
Sbjct: 560 VTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFES 619

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISGDV 359
           M   Y IQPS EH+ C+  +L RA R+ +A EFV  +  K +  ++WG+LL    I    
Sbjct: 620 MRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQF 679

Query: 360 ELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ELGK V   L E+E  N  TG +++++N+Y++   W+  D VR+QM+E GL K  G SWI
Sbjct: 680 ELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWI 739

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           E +G +  F +KD    +S+QIY +LE LL  M+  GY
Sbjct: 740 EIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGY 777



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 197/435 (45%), Gaps = 77/435 (17%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+   WN+MI+ + Q  F  E   LF + + S     D VT++S + A           
Sbjct: 251 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 310

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H FVI++     + + NALI MY++C S+D +  + D M +KD VS++ +IS ++ +G
Sbjct: 311 QLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNG 370

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             ++A+ LF  MK+  L                                 ++VT++++ S
Sbjct: 371 LNDEALMLFYEMKKQDLMV-------------------------------DSVTVTALLS 399

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL 240
             S   N   GK+ HGY ++N       + + +ID YAK+G +  AQ VF++     R  
Sbjct: 400 AASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQ 458

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAW 295
             W +++S Y  +G   +A  +  +ML+  + P+ VT  ++L AC  SG +D       +
Sbjct: 459 ATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGF 518

Query: 296 DIFN----------AMSGQYGIQPSVEHYACMVGVLSRARRIS----------------- 328
            I N          A+   Y    S+ H      V S+A   S                 
Sbjct: 519 SIRNDLDQNVFVATALIDMYSKSGSIAHAE---NVFSKANEKSIVTYSTMILGYGQHGMG 575

Query: 329 EATEF----VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
           E+  F    + K  ++P A    A+L   S +G V+ G  + + +   + I+P +T ++ 
Sbjct: 576 ESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQP-STEHFC 634

Query: 382 IMANLYSQAGRWDEA 396
            +A++  +AGR D+A
Sbjct: 635 CVADMLGRAGRVDKA 649



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 157/349 (44%), Gaps = 33/349 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           + +   V WN++I G     F +E    +  M +S P ++ D  T  SVL+AC  + ++V
Sbjct: 30  LPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLV 89

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  VH   +   +     + N+L+ MY+ C S           +  D      ++SGY 
Sbjct: 90  VGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSS-----------TTPD----GKMVSGYS 134

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V K   +F  M++  +  WN +I+  V+  R+   +     M   G++P+ V+  +
Sbjct: 135 RCDLVRK---VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVN 191

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +F  FS   + K    +HG  VK  + Y  ++YV ++ I  YA+ G L  A++VFD    
Sbjct: 192 VFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLE 251

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVD---- 292
           R+  +W  +ISA+  +  + + + LF + + +     D VT  + +SA +H    +    
Sbjct: 252 RNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQ 311

Query: 293 -KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
             A+ I N    Q  +  +      ++ + SR   I  + +    MP K
Sbjct: 312 LHAFVIKNVAVTQVCVMNA------LIAMYSRCNSIDTSFKIFDNMPEK 354



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 188/442 (42%), Gaps = 83/442 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR +V+WN++IA Y +   Y E    F  M+   + +P  V+ V+V  A     D   
Sbjct: 146 MRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGI-KPSPVSFVNVFPAFSSLGDFKN 204

Query: 61  GMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
              VH  +++  S    DL++ ++ I MYA+ G L++A+ + D   +++   ++ +IS +
Sbjct: 205 ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAF 264

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           + + F  + + LF          + AV S        +A +D              VT+ 
Sbjct: 265 VQNNFSLEGIQLF----------FQAVES-------EDAAID-------------EVTLL 294

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S  S  SH    +  +++H + +KN     + V  A+I  Y++   +  + ++FD    +
Sbjct: 295 SAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK 354

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------- 285
            ++ W  +ISA+  +G   +A+ LF EM    +  D VT TA+LSA              
Sbjct: 355 DVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTH 414

Query: 286 ---------------------AHSGLVDKAWDIF-------------NAMSGQYGIQPSV 311
                                A SGL++ A ++F             N+M   Y     V
Sbjct: 415 GYLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLV 474

Query: 312 EHYACMVGVLSRARRISEATEFVSKMP-VKPSAKV-WGALLYGASISGDVELGKFVCDHL 369
           +    ++  +   + +       S +P   PS  + WG  L+G SI  D++   FV   L
Sbjct: 475 DQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATAL 534

Query: 370 FEIEPENTGNYIIMANLYSQAG 391
            ++  + +G+     N++S+A 
Sbjct: 535 IDMYSK-SGSIAHAENVFSKAN 555



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 15/183 (8%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISS 179
           G +  A  LF  + RP    WN +I GLV NN  +  L     M++S   V+ ++ T SS
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 77

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-----------TGFLHG- 227
           +    +   NL  GK +H + ++   + +  V  ++++ Y+            +G+    
Sbjct: 78  VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 137

Query: 228 -AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             ++VFD  + R+++ W  +I+ Y      ++AV  F+ M+  GI+P PV+F  V  A +
Sbjct: 138 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 197

Query: 287 HSG 289
             G
Sbjct: 198 SLG 200


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 261/472 (55%), Gaps = 25/472 (5%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R I  WN+MI+GY++ G  E+   LF EM+    L P+  T+ SV+ AC           
Sbjct: 362 RRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKES 421

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H + ++   K D ++ NAL+ MY++ G +D +  + D M  +D VS++ +I+GY++ G 
Sbjct: 422 IHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGR 481

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+ L   M+R                N  +   D   + +    +PNA+T+ ++   
Sbjct: 482 YSNALVLLHEMQR--------------MENTKDVKKDDNDDEKGGPYKPNAITLMTVLPG 527

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  + +  GKEIH YA++N    +I V +A++D YAK G L+ ++RVF+    +++I W
Sbjct: 528 CAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITW 587

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNG-----IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             +I A   HG   +A+ LF  M+         +P+ VTF  V +AC+HSGL+ +  ++F
Sbjct: 588 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 647

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASISG 357
             M   +G++P+ +HYAC+V +L RA ++ EA E V+ MP +      W +LL    I  
Sbjct: 648 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 707

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +VELG+    +L  +EP    +Y++++N+YS AG W++A  VR+ M++ G+ K PG SWI
Sbjct: 708 NVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWI 767

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E    +  F+A D S  +SEQ++  LE L   MR+EGYV     +L  V+E+
Sbjct: 768 EFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDED 819



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 173/380 (45%), Gaps = 61/380 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWN+MI+ +SQ   + E  A FR M+   V   DGVT+ SVL AC     +  G E
Sbjct: 260 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV-ELDGVTIASVLPACSHLERLDVGKE 318

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +V+ ++ +  + ++ +AL+ MY  C  ++  R + D +  +    ++A+ISGY  +G
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             EKA+ LF                              +  ++ +G+ PN  T++S+  
Sbjct: 379 LDEKALILF------------------------------IEMIKVAGLLPNTTTMASVMP 408

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
              H       + IHGYAVK  +  + YV  A++D Y++ G +  ++ +FD  + R  + 
Sbjct: 409 ACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVS 468

Query: 243 WTAIISAYAAHGDASKAVSLFNEM--LNNGI---------------QPDPVTFTAVLSAC 285
           W  +I+ Y   G  S A+ L +EM  + N                 +P+ +T   VL  C
Sbjct: 469 WNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGC 528

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A    + K     A+ I N ++    +  ++       G L+ +RR+       ++MP K
Sbjct: 529 AALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRV------FNEMPNK 582

Query: 341 PSAKVWGALLYGASISGDVE 360
            +   W  L+    + G  E
Sbjct: 583 -NVITWNVLIMACGMHGKGE 601



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 136/292 (46%), Gaps = 38/292 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC---GQSSD 57
           ++ RD VSWNS IA   +   +E+    FR M     +     T+VSV  AC   G    
Sbjct: 154 ITDRDQVSWNSFIAALCRFEKWEQALEAFRAM-QMENMELSSFTLVSVALACSNLGVMHG 212

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +  G ++H + +        +  NAL+ MYAK G +D ++AL +   D+D VS       
Sbjct: 213 LRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVS------- 264

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                   WN +IS   Q++R    L   R M   GV  + VTI
Sbjct: 265 ------------------------WNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTI 300

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +S+    SH   L  GKEIH Y ++N     N +V +A++D Y     +   +RVFD   
Sbjct: 301 ASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHIL 360

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAH 287
           GR + +W A+IS YA +G   KA+ LF EM+   G+ P+  T  +V+ AC H
Sbjct: 361 GRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 37/298 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R   SW   +   ++   + E  + + EM  S   RPD     +VL+A     D+  G +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGA-RPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 64  VHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H   ++  +    + + N L+ MY KCG +     + D ++D+D+VS            
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVS------------ 161

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              WN+ I+ L +  + E  L+  R MQ   +  ++ T+ S+  
Sbjct: 162 -------------------WNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVAL 202

Query: 183 LFSHFSNLKG---GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S+   + G   GK++HGY+++   D+  +   A++  YAK G +  ++ +F+ F  R 
Sbjct: 203 ACSNLGVMHGLRLGKQLHGYSLR-VGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRD 261

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           ++ W  +IS+++     S+A++ F  M+  G++ D VT  +VL AC+H   +D   +I
Sbjct: 262 MVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEI 319



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 147/334 (44%), Gaps = 61/334 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-----------------LNSPVLRPDGV 43
           M  RD VSWN+MI GY   G Y     L  EM                    P  +P+ +
Sbjct: 461 MEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGP-YKPNAI 519

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T+++VL  C   + I  G E+H + I + +  D+ + +AL+ MYAKCG L+ +R + +EM
Sbjct: 520 TLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEM 579

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            +K+ ++++ +I    +HG  E+A++LF+                           ++V 
Sbjct: 580 PNKNVITWNVLIMACGMHGKGEEALELFK---------------------------NMVA 612

Query: 164 EMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIID 217
           E    G  +PN VT  ++F+  SH   +  G  +     H + V+   D        ++D
Sbjct: 613 EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDH----YACVVD 668

Query: 218 TYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
              + G L  A  + +        +  W++++ A   H +          +L+  ++P+ 
Sbjct: 669 LLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLH--LEPNV 726

Query: 276 VTFTAVLSAC-AHSGLVDKAWDIFNAMSGQYGIQ 308
            +   +LS   + +GL +KA ++   M  Q G++
Sbjct: 727 ASHYVLLSNIYSSAGLWNKAMEVRKNMR-QMGVK 759


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 275/474 (58%), Gaps = 16/474 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+  +MI GY + G  +E +ALF EM    V     VT  +++    ++  +  
Sbjct: 174 MPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV-----VTWTAMVSGYARNGKVDV 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++   + E +   ++     L+G Y   G +  A +L D M  K  V  + +I G+ +
Sbjct: 229 ARKLFEVMPERN---EVSWTAMLLG-YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGL 284

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V+KA  +F+ MK     TW+A+I    +       L L R MQ  G+  N  ++ S+
Sbjct: 285 NGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISV 344

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+    ++L  GK++H   V++ +D+++YVA+ +I  Y K G L  A++VF+RF  + +
Sbjct: 345 LSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDV 404

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W ++I+ Y+ HG   +A+++F++M ++G+ PD VTF  VLSAC++SG V +  ++F  
Sbjct: 405 VMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFET 464

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P +EHYAC+V +L RA +++EA + V KMP++P A VWGALL        ++
Sbjct: 465 MKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLD 524

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + L ++EP+N G Y++++N+Y+  GRW + + +RE++K   + K+PG SWIE  
Sbjct: 525 LAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVE 584

Query: 421 GGLQSFVAKDTSGDKSEQIYL-ILERLLGLMREEGY------VLLDEVEEESAY 467
             +  F   D+ G   + I + +LE+L GL+RE GY      VL D  EEE  +
Sbjct: 585 KKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTH 638



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 163/358 (45%), Gaps = 21/358 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ VSWN +I+G+ + G   E + +F  M +  V     V+  S+++   ++ D+  
Sbjct: 81  MPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNV-----VSWTSMVRGYVRNGDVAE 135

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +  F    H  +  W    ++G   + G +D AR L D M +KD V+ + +I GY  
Sbjct: 136 AERL--FWHMPHKNVVSW--TVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCE 191

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +++A  LF  M +  + TW A++SG  +N +    +D+ R++       N V+ +++
Sbjct: 192 EGRLDEARALFDEMPKRNVVTWTAMVSGYARNGK----VDVARKLFEVMPERNEVSWTAM 247

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
              ++H   ++    +     VK      + V   +I  +   G +  A+RVF   K R 
Sbjct: 248 LLGYTHSGRMREASSLFDAMPVK-----PVVVCNEMIMGFGLNGEVDKARRVFKGMKERD 302

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
              W+A+I  Y   G   +A+ LF  M   G+  +  +  +VLS C     +D    + +
Sbjct: 303 NGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQV-H 361

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           A   +      +   + ++ +  +   +  A +  ++ P+K    +W +++ G S  G
Sbjct: 362 AQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQHG 418



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 155/328 (47%), Gaps = 23/328 (7%)

Query: 84  IGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           I  YA+ G LD+AR + DE  +  +   S++A+++ Y       +A+ LF+ M +    +
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN +ISG ++N     +L   R +  +    N V+ +S+   +    ++   + +  +  
Sbjct: 89  WNGLISGHIKN----GMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMP 144

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
                +N+   T ++    + G +  A+++FD    + ++  T +I  Y   G   +A +
Sbjct: 145 H----KNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARA 200

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           LF+EM    +    VT+TA++S  A +G VD A  +F  M  +  +      +  M+   
Sbjct: 201 LFDEMPKRNV----VTWTAMVSGYARNGKVDVARKLFEVMPERNEVS-----WTAMLLGY 251

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
           + + R+ EA+     MPVKP   V   ++ G  ++G+V+  + V   + E    + G + 
Sbjct: 252 THSGRMREASSLFDAMPVKPVV-VCNEMIMGFGLNGEVDKARRVFKGMKE---RDNGTWS 307

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLA 409
            M  +Y + G   EA  +  +M+  GLA
Sbjct: 308 AMIKVYERKGYELEALGLFRRMQREGLA 335


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 259/472 (54%), Gaps = 40/472 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF-- 60
           KR I  WN++    +  G   +   L+  M N   +  D  T   +L+AC  S  +V   
Sbjct: 132 KRTIYVWNALFRALALAGRGNDVLELYPRM-NMMGVSSDRFTYTYLLKACVASECLVSFL 190

Query: 61  --GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G E+H  ++       + +   L+ MYA+ G + YA A+ DEM  K+ VS+SA+I+ Y
Sbjct: 191 QKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACY 250

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G   +A++LF+ M                  N H++V             PN+VT+ 
Sbjct: 251 AKNGKPYEALELFREM----------------MLNTHDSV-------------PNSVTMV 281

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    + F+ L+ GK IH Y ++   D  + V +A+I  YA+ G L   Q +FDR   +
Sbjct: 282 SVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKK 341

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +++W ++IS+Y  HG   KA+ +F EM+++G  P  ++F +VL AC+H+GLV++   +F
Sbjct: 342 DVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLF 401

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M  ++GIQPSVEHYACMV +L RA R+ EA + +  + ++P  KVWG+LL    I   
Sbjct: 402 ESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCH 461

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL +     LF++EP N GNY+++A++Y++A  WDE  RV++ +    L K+PGRSWIE
Sbjct: 462 VELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIE 521

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
               + SF + D    + EQ++ +L  L   M++ GY      VL D  +EE
Sbjct: 522 VRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEE 573



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +++VSW++MIA Y++ G   E   LFREM LN+    P+ VT+VSVLQAC   + + 
Sbjct: 235 MPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALE 294

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H +++   +   L + +ALI MYA+CG L+  + + D M  KD V ++++IS Y 
Sbjct: 295 QGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYG 354

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +HG+  KA+ +F+ M   G S  +     ++    H  +++  +++  S V+ + +  S
Sbjct: 355 LHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPS 413



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 161/356 (45%), Gaps = 45/356 (12%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           +LD  + L+D   D+D    + +I+ +     V+ A  +F   ++  +  WNA+   L  
Sbjct: 88  ALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALAL 147

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLF----SHFSNLKGGKEIHGYAVKNRYDR 207
             R   VL+L   M   GV  +  T + +           S L+ GKEIH + +++ Y  
Sbjct: 148 AGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGA 207

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           +++V T ++D YA+ G +  A  VFD    ++++ W+A+I+ YA +G   +A+ LF EM+
Sbjct: 208 HVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMM 267

Query: 268 NNGIQ--PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
            N     P+ VT  +VL ACA    +++   + +A   + G+   +   + ++ + +R  
Sbjct: 268 LNTHDSVPNSVTMVSVLQACAAFAALEQG-KLIHAYILRRGLDSILPVISALITMYARCG 326

Query: 326 RISEATEFVSKMPVK----------------------------------PSAKVWGALLY 351
           ++        +M  K                                  PS   + ++L 
Sbjct: 327 KLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLG 386

Query: 352 GASISGDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             S +G VE GK + + + +   I+P +  +Y  M +L  +A R DEA ++ E ++
Sbjct: 387 ACSHTGLVEEGKKLFESMVKEHGIQP-SVEHYACMVDLLGRANRLDEAAKIIEDLR 441



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 137 PGLSTWNAVISGLV-QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
           P  S  N +I  L  Q N  +A+  L  E       P   T   +    +  ++L    +
Sbjct: 36  PPNSNNNHLIQSLCKQGNLKQALYLLSHESN-----PTQQTCELLILSAARRNSLSDALD 90

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           +H   V   +D++ ++AT +I+ +++   +  A++VFD+ + R++ +W A+  A A  G 
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS----GLVDKAWDIFNAMSGQYGIQPSV 311
            +  + L+  M   G+  D  T+T +L AC  S      + K  +I +A   ++G    V
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEI-HAHILRHGYGAHV 209

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
                ++ + +R   +S A+    +MPVK +   W A++
Sbjct: 210 HVMTTLMDMYARFGCVSYASAVFDEMPVK-NVVSWSAMI 247


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 263/465 (56%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ VSW  +I G  Q   + +   LF +M  + ++  D   + +++  C    D+  
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLISGCFNRMDLCL 389

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI +YAKCG L  A  +   MS++D VS++++I+ Y  
Sbjct: 390 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISS 179
            G + KA + F  M      TWNA++   +Q+   E  L +   M +   V P+ VT  +
Sbjct: 450 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G+ VK     N+ VA A I  Y+K G +  AQ++FD   G+ 
Sbjct: 510 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 569

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A+I+ Y+ HG   +A   F++ML+ G +PD +++ AVLS C+HSGLV +    F+
Sbjct: 570 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 629

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M+  +GI P +EH++CMV +L RA  ++EA + + KMP+KP+A+VWGALL    I G+ 
Sbjct: 630 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 689

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    H+FE++  ++G+Y+++A +YS AG+ D++ +VR+ M++ G+ K PG SW+E 
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEV 749

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +  F A D S  +   I   ++ L+  +   GYV  +    E
Sbjct: 750 ENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSE 794



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 8/289 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ SWN++++GY Q   + +    F  M  S    P+  T   V+++CG     + 
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGA----LG 152

Query: 61  GMEVHNFVIESHIKMDLW----ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
             E+   ++    K D W    +  AL+ M+ +CG +D+A  L  ++        +++++
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLA 212

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY     ++ A++ F+ M    + +WN +I+ L Q+ R    L LV EM   GVR ++ T
Sbjct: 213 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 272

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +S  +  +   +L  GK++H   +++    + YVA+A+I+ YAK G    A+RVF+  +
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            R+ + WT +I     +   SK+V LFN+M    +  D      ++S C
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 205/481 (42%), Gaps = 101/481 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++RD+VSWN MIA  SQ G   E   L  EM    V R D  T  S L AC +   + +
Sbjct: 230 MAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV-RLDSTTYTSSLTACARLFSLGW 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI S  ++D ++ +ALI +YAKCGS   A+ + + + D++ VS++ +I G + 
Sbjct: 289 GKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 348

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +    K+++LF                                +M+A  +  +   ++++
Sbjct: 349 YECFSKSVELFN-------------------------------QMRAELMAIDQFALATL 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S   +  +L  G+++H   +K+ ++R I V+ ++I  YAK G L  A+ VF     R +
Sbjct: 378 ISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437

Query: 241 IIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQ----------------- 272
           + WT++I+AY+  G+  KA   F           N ML   IQ                 
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 273 ----PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
               PD VT+  +   CA  G  +K  D     + + G+  +V      + + S+  RIS
Sbjct: 498 KDVTPDWVTYVTLFRGCADIG-ANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS 556

Query: 329 EATEFVSKMP----------------------------------VKPSAKVWGALLYGAS 354
           EA +    +                                    KP    + A+L G S
Sbjct: 557 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 616

Query: 355 ISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            SG V+ GK   D +  +   + G  ++  M +L  +AG   EA  + ++M     A++ 
Sbjct: 617 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 676

Query: 413 G 413
           G
Sbjct: 677 G 677



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 33/275 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD-EM 103
           +   L++CG    +     +H  ++   +   +++ N L+  Y  CG+L  AR LL  ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            + + ++++ +++GY   G +  A +LF  M R  +++WN ++SG  Q  R    L+   
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 164 EMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            M  SG   PNA T   +          +   ++ G   K  +  +  V TA++D + + 
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 223 GFLHGAQRVFDRFKG-------------------------------RSLIIWTAIISAYA 251
           G++  A R+F + +                                R ++ W  +I+A +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             G   +A+ L  EM   G++ D  T+T+ L+ACA
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 281


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 265/450 (58%), Gaps = 6/450 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWNS+   + +   +    +L   ML   + RPD VT++++++ C     +  
Sbjct: 416 ISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRI-RPDSVTILAIIRLCASLLRVEK 474

Query: 61  GMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
             E+H++ I +   +      + NA++  Y+KCG+++YA  +   +S+K + V+ +++IS
Sbjct: 475 VKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLIS 534

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G    A  +F  M    L+TWN ++    +N+  E  L L  E+QA G++P+ VT
Sbjct: 535 GYVGLGSHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVT 594

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I S+  + +  +++    +  GY +++ + +++++  A++D YAK G +  A ++F    
Sbjct: 595 IMSLLPVCTQMASVHLLSQCQGYIIRSCF-KDLHLEAALLDAYAKCGIIGRAYKIFQLSA 653

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + L+++TA+I  YA HG + +A+ +F+ ML  GIQPD + FT++LSAC+H+G VD+   
Sbjct: 654 EKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLK 713

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IF ++   +G++P+VE YAC+V +L+R  RISEA   V+ +P++ +A +WG LL      
Sbjct: 714 IFYSIEKLHGMKPTVEQYACVVDLLARGGRISEAYSLVTSLPIEANANLWGTLLGACKTH 773

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VELG+ V + LF+IE  + GNYI+++NLY+   RWD    VR  M+   L K  G SW
Sbjct: 774 HEVELGRIVANQLFKIEANDIGNYIVLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSW 833

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           IE       FVA D S  +   IY  L+ L
Sbjct: 834 IEVERTNNIFVAGDCSHPQRSIIYSTLQTL 863



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 44/296 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA----LFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           +S  D V WN +++G+S      +C A    +FR M +S    P+ VTV +VL  C +  
Sbjct: 104 LSHCDPVVWNIVLSGFSGS---NKCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLG 160

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY-ARALLDEMSDKDEVSYSAII 115
           D+  G  VH +VI+S    D    NAL+ MYAKCG + + A A+ D ++ KD VS     
Sbjct: 161 DLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVS----- 215

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                                     WNA+I+GL +N   E    L   M     RPN  
Sbjct: 216 --------------------------WNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYA 249

Query: 176 TISSIFSLFSHFSN---LKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           T+++I  + + F        G++IH Y ++      ++ V  A+I  Y K G +  A+ +
Sbjct: 250 TVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEAL 309

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACA 286
           F     R L+ W A I+ Y ++G+  KA+ LF  + +   + PD VT  ++L ACA
Sbjct: 310 FWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACA 365



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 35/290 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD  +W S+I        + E  +LF   L      +PD   + ++L++C       
Sbjct: 1   MLGRDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPN 60

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H +V++            L+ MYAKCG L     L D++S  D V          
Sbjct: 61  LGRTLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPV---------- 110

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA-VLDLVREMQASG-VRPNAVTI 177
                                 WN V+SG   +N+ +A V+ + R M +S    PN+VT+
Sbjct: 111 ---------------------VWNIVLSGFSGSNKCDADVMRVFRMMHSSREALPNSVTV 149

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFK 236
           +++  + +   +L  GK +HGY +K+ +D++     A++  YAK G + H A  VFD   
Sbjct: 150 ATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIA 209

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            + ++ W A+I+  A +     A  LF+ M+    +P+  T   +L  CA
Sbjct: 210 YKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCA 259



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQA--SGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
             TW +VI  L    +H   L L           +P+   +++I    S       G+ +
Sbjct: 6   FKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGRTL 65

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           HGY VK  +         +++ YAK G L    ++FD+      ++W  ++S ++     
Sbjct: 66  HGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKC 125

Query: 257 SKAVSLFNEMLNNGIQ--PDPVTFTAVLSACAHSGLVD 292
              V     M+++  +  P+ VT   VL  CA  G +D
Sbjct: 126 DADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLD 163


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 257/474 (54%), Gaps = 42/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R IVSW ++++ Y+Q G   E   +F +M    V +PD V +VSVL A     D+  
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV-KPDWVALVSVLNAFTCLQDLKQ 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  ++++  +  +L  MYAKCG +  A+ L D+M                 
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM----------------- 283

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         K P L  WNA+ISG  +N      +D+  EM    VRP+ ++I+S 
Sbjct: 284 --------------KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L+  + ++ Y  ++ Y  ++++++A+ID +AK G + GA+ VFDR   R +
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I  Y  HG A +A+SL+  M   G+ P+ VTF  +L AC HSG+V + W  FN 
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNR 449

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  + I P  +HYAC++ +L RA  + +A E +  MPV+P   VWGALL        VE
Sbjct: 450 MA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG++    LF I+P NTG+Y+ ++NLY+ A  WD    VR +MKE GL K  G SW+E  
Sbjct: 509 LGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV---------LLDEVEEES 465
           G L++F   D S  + E+I   +E +   ++E G+V         L DE  EE+
Sbjct: 569 GRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 177/359 (49%), Gaps = 36/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +  I  WN++I GYS+   +++   ++  M  + V  PD  T   +L+AC   S +  
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV-SPDSFTFPHLLKACSGLSHLQM 137

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISGY 118
           G  VH  V       D+++ N LI +YAKC  L  AR + +   + ++  VS++AI+S Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G   +A+++F                                +M+   V+P+ V + 
Sbjct: 198 AQNGEPMEALEIFS-------------------------------QMRKMDVKPDWVALV 226

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ + F+   +LK G+ IH   VK   +    +  ++   YAK G +  A+ +FD+ K  
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSP 286

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +LI+W A+IS YA +G A +A+ +F+EM+N  ++PD ++ T+ +SACA  G +++A  ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             + G+   +  V   + ++ + ++   + E    V    +     VW A++ G  + G
Sbjct: 347 EYV-GRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHG 403



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 109 VSYSAIISGYMVH-----GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           + +S  +   ++H     G +  A  +F  + RP +  WNA+I G  +NN  +  L +  
Sbjct: 49  LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            MQ + V P++ T   +    S  S+L+ G+ +H    +  +D +++V   +I  YAK  
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR 168

Query: 224 FLHGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            L  A+ VF+      R+++ WTAI+SAYA +G+  +A+ +F++M    ++PD V   +V
Sbjct: 169 RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSV 228

Query: 282 LSACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           L+  A + L D K     +A   + G++   +    +  + ++  +++ A     KM   
Sbjct: 229 LN--AFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-S 285

Query: 341 PSAKVWGALLYGASISG 357
           P+  +W A++ G + +G
Sbjct: 286 PNLILWNAMISGYAKNG 302


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 262/460 (56%), Gaps = 38/460 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+MI+ + Q G  +E   LF EM    ++  D VTV ++L A     +   
Sbjct: 375 MPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLM-VDSVTVTALLSAASDLRNPDI 433

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
           G + H +++ + I+ +  + + LI MYAK G ++ A+ + ++    ++D+          
Sbjct: 434 GKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQ---------- 482

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                +TWN+++SG  QN   +    ++R+M    V PN VT++
Sbjct: 483 ---------------------ATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLA 521

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    +    +  GK++HG++++N  D+N++VATA+ID Y+K+G +  A+ VF +   +
Sbjct: 522 SILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEK 581

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S++ ++ +I  Y  HG    A+ +F+ M  +GIQPD VT  AVLSAC+++GLVD+   IF
Sbjct: 582 SIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIF 641

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISG 357
            +M   Y IQPS EH+ C+  +L RA R+ +A EFV  +  K +  ++WG+LL    I  
Sbjct: 642 ESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHK 701

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             ELGK V   L E+E  N  TG +++++N+Y++   W+  D VR+QM+E GL K  G S
Sbjct: 702 QFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSS 761

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           WIE +G +  F +KD    +S+QIY +LE LL  M+  GY
Sbjct: 762 WIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGY 801



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 197/435 (45%), Gaps = 77/435 (17%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+   WN+MI+ + Q  F  E   LF + + S     D VT++S + A           
Sbjct: 275 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 334

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H FVI++     + + NALI MY++C S+D +  + D M +KD VS++ +IS ++ +G
Sbjct: 335 QLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNG 394

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             ++A+ LF  MK+  L                                 ++VT++++ S
Sbjct: 395 LNDEALMLFYEMKKQDLMV-------------------------------DSVTVTALLS 423

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL 240
             S   N   GK+ HGY ++N       + + +ID YAK+G +  AQ VF++     R  
Sbjct: 424 AASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQ 482

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAW 295
             W +++S Y  +G   +A  +  +ML+  + P+ VT  ++L AC  SG +D       +
Sbjct: 483 ATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGF 542

Query: 296 DIFN----------AMSGQYGIQPSVEHYACMVGVLSRARRIS----------------- 328
            I N          A+   Y    S+ H      V S+A   S                 
Sbjct: 543 SIRNDLDQNVFVATALIDMYSKSGSIAHAE---NVFSKANEKSIVTYSTMILGYGQHGMG 599

Query: 329 EATEF----VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
           E+  F    + K  ++P A    A+L   S +G V+ G  + + +   + I+P +T ++ 
Sbjct: 600 ESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQP-STEHFC 658

Query: 382 IMANLYSQAGRWDEA 396
            +A++  +AGR D+A
Sbjct: 659 CVADMLGRAGRVDKA 673



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 22/291 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           + +   V WN++I G     F +E    +  M +S P ++ D  T  SVL+AC  + ++V
Sbjct: 54  LPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLV 113

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  VH   +   +     + N+L+ MY+ C S           +  D      ++SGY 
Sbjct: 114 VGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSS-----------TTPD----GKMVSGYS 158

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               V K   +F  M++  +  WN +I+  V+  R+   +     M   G++P+ V+  +
Sbjct: 159 RCDLVRK---VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVN 215

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +F  FS   + K    +HG  VK  + Y  ++YV ++ I  YA+ G L  A++VFD    
Sbjct: 216 VFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLE 275

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAH 287
           R+  +W  +ISA+  +  + + + LF + + +     D VT  + +SA +H
Sbjct: 276 RNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASH 326



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 188/442 (42%), Gaps = 83/442 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR +V+WN++IA Y +   Y E    F  M+   + +P  V+ V+V  A     D   
Sbjct: 170 MRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGI-KPSPVSFVNVFPAFSSLGDFKN 228

Query: 61  GMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
              VH  +++  S    DL++ ++ I MYA+ G L++A+ + D   +++   ++ +IS +
Sbjct: 229 ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAF 288

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           + + F  + + LF          + AV S        +A +D              VT+ 
Sbjct: 289 VQNNFSLEGIQLF----------FQAVES-------EDAAID-------------EVTLL 318

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S  S  SH    +  +++H + +KN     + V  A+I  Y++   +  + ++FD    +
Sbjct: 319 SAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK 378

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------- 285
            ++ W  +ISA+  +G   +A+ LF EM    +  D VT TA+LSA              
Sbjct: 379 DVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTH 438

Query: 286 ---------------------AHSGLVDKAWDIF-------------NAMSGQYGIQPSV 311
                                A SGL++ A ++F             N+M   Y     V
Sbjct: 439 GYLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLV 498

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPV-KPSAKV-WGALLYGASISGDVELGKFVCDHL 369
           +    ++  +   + +       S +P   PS  + WG  L+G SI  D++   FV   L
Sbjct: 499 DQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATAL 558

Query: 370 FEIEPENTGNYIIMANLYSQAG 391
            ++  + +G+     N++S+A 
Sbjct: 559 IDMYSK-SGSIAHAENVFSKAN 579



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 15/183 (8%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISS 179
           G +  A  LF  + RP    WN +I GLV NN  +  L     M++S   V+ ++ T SS
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-----------TGFLHG- 227
           +    +   NL  GK +H + ++   + +  V  ++++ Y+            +G+    
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 161

Query: 228 -AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             ++VFD  + R+++ W  +I+ Y      ++AV  F+ M+  GI+P PV+F  V  A +
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 221

Query: 287 HSG 289
             G
Sbjct: 222 SLG 224


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 259/471 (54%), Gaps = 38/471 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+WN MI  +   G  E+   L  EM     LRPD VT+VS++ AC Q  ++  G  
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H++  E  +  +L + NA++ MY KC  ++ A+ + + + +KD +S             
Sbjct: 235 LHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLS------------- 281

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             W +++SGL ++   +  L L ++MQ + +  + +T+  + S 
Sbjct: 282 ------------------WTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSA 323

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  GK IH    K   + ++ + TA++D YAK G +  A +VF R + R++  W
Sbjct: 324 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 383

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I   A HG    A+SLF++M ++ + PD VTF A+L AC+H+GLVD+   +F AM  
Sbjct: 384 NALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 443

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ I+P +EHY C+V +L RAR++ +A  F+  MP+K ++ +W  LL      G  +L +
Sbjct: 444 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE 503

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            +   + E+EP++ G Y++++NLY+   +WD A ++R+QMK  G+ K PG SWIE +G +
Sbjct: 504 KIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 563

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEESAY 467
             FVA D S  ++EQIY ++E +   +  +G        VL D  EEE  +
Sbjct: 564 HQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEH 614



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 189/409 (46%), Gaps = 42/409 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS--PVLRPDGVTVVSVLQACGQSSDI 58
           M   D    N+MI GY++     E  +L+  M+    PV   D  T   VL AC +   +
Sbjct: 71  MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPV---DNYTYPFVLAACARLGAV 127

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G   H  V+++    DL++ NALI  Y  CGS   A  + DE + +D V         
Sbjct: 128 KLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV--------- 178

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTI 177
                                 TWN +I+  +     E   DL+ EM +   +RP+ VT+
Sbjct: 179 ----------------------TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTM 216

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+    +   NL+ GK +H Y+ +   D N+ V  AI+D Y K   +  AQ VF+R + 
Sbjct: 217 VSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIRE 276

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + ++ WT+++S  A  G   +A++LF +M  N I+ D +T   VLSACA +G +D+   I
Sbjct: 277 KDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYI 336

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            + +  ++ I   +     +V + ++   I  A +   +M V+ +   W AL+ G ++ G
Sbjct: 337 -HLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHG 394

Query: 358 DVELGKFVCDHLF--EIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             E    + D +   ++ P++   +I +    S AG  DE   + + MK
Sbjct: 395 HGEDAISLFDQMEHDKLMPDDV-TFIALLCACSHAGLVDEGLAMFQAMK 442



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++ +WN++I G +  G  E+  +LF +M +  ++ PD VT +++L AC  +  +  
Sbjct: 375 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM-PDDVTFIALLCACSHAGLVDE 433

Query: 61  GMEV-----HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           G+ +     + F IE   +M+ + C  ++ +  +   +D A A ++ M  K
Sbjct: 434 GLAMFQAMKNKFQIEP--RMEHYGC--VVDLLCRARKVDDALAFIENMPIK 480


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 265/481 (55%), Gaps = 51/481 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+++W+++IAGY+Q G+ +E    F++M+      P+ VT++S+L AC     +  GME 
Sbjct: 359 DVITWSAVIAGYAQRGYGQEALDTFQQMILYGS-EPNSVTIISLLSACASLGALSQGMET 417

Query: 65  HNFVIESHI------------KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
           H + ++  +              DL + NALI MY+KC S   AR + + +  ++     
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRER---- 473

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGV 170
                                     + TW  +I G  Q       L L  EM  +   V
Sbjct: 474 -------------------------NVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAV 508

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIY-VATAIIDTYAKTGFLHGA 228
            PNA TIS I    +H S+L+ GK+IH Y  ++  Y+ ++Y VA  +ID Y+K G +  A
Sbjct: 509 APNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTA 568

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           + VFD    R+ + WT+++S Y  HG   +A+ +F++M   G  PD ++F  +L AC+HS
Sbjct: 569 RNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHS 628

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G+VD+  D F+ M   YG+  S +HYAC++ +L+R+ R+ +A + + +MP++PSA +W A
Sbjct: 629 GMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVA 688

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           LL    +  +VEL ++  + L  ++ EN G+Y +++N+Y+ A RW +  R+R+ MK+SG+
Sbjct: 689 LLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGI 748

Query: 409 AKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
            K PG SW++   G  SF   D S   S +IY +LERL+G ++  GYV      L +V++
Sbjct: 749 KKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDD 808

Query: 464 E 464
           E
Sbjct: 809 E 809



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 191/379 (50%), Gaps = 27/379 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLN-----SPVLRPDGVTVVSVLQACGQSSDIV 59
           D++SWNS++A + +G        LF EM       +   R D +++V++L AC     + 
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              E+H++ I +    D ++CNALI  YAKCGS+  A  + + M  KD VS++A+++GY 
Sbjct: 277 QTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYT 336

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             G    A +LF+ M++  +     TW+AVI+G  Q    +  LD  ++M   G  PN+V
Sbjct: 337 QSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSV 396

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKN------------RYDRNIYVATAIIDTYAKTG 223
           TI S+ S  +    L  G E H Y++K                 ++ V  A+ID Y+K  
Sbjct: 397 TIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCR 456

Query: 224 FLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFT 279
               A+ +F+    + R+++ WT +I  YA +GD++ A+ LF+EM++    + P+  T +
Sbjct: 457 SFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTIS 516

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMP 338
            +L ACAH   +     I   ++  +  + SV   A C++ + S+   +  A      MP
Sbjct: 517 CILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 339 VKPSAKVWGALLYGASISG 357
            K +   W +++ G  + G
Sbjct: 577 -KRNEVSWTSMMSGYGMHG 594



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 30/307 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN ++  + + G  +    +   ML +   +PD  T+   L+ACG+      G   H 
Sbjct: 115 VWWNLLVRAHIEEGRLDRAIGVSCRMLRAGT-KPDHFTLPYALKACGELPSYRSGSAFHG 173

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGF 123
            +  +  + ++++CNAL+ MY++ GSL+ A  + DE++ K   D +S+++I++ ++    
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+DLF  M                          +V E +A+  R + ++I +I   
Sbjct: 234 PRTALDLFSEMT------------------------TIVHE-KATNERSDIISIVNILPA 268

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L   KEIH YA++N    + +V  A+IDTYAK G +  A  VF+  + + ++ W
Sbjct: 269 CASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSW 328

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+++ Y   G    A  LF  M    I  D +T++AV++  A  G   +A D F  M  
Sbjct: 329 NAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI- 387

Query: 304 QYGIQPS 310
            YG +P+
Sbjct: 388 LYGSEPN 394



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 114/260 (43%), Gaps = 21/260 (8%)

Query: 112 SAIISGYMVHGFVEKAMDLFQ-VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
           + +++ Y+  G    A+ + + V+  P +  WN ++   ++  R +  + +   M  +G 
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAV-WWNLLVRAHIEEGRLDRAIGVSCRMLRAGT 145

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           +P+  T+           + + G   HG    N ++ N++V  A++  Y+++G L  A  
Sbjct: 146 KPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASL 205

Query: 231 VFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLN------NGIQPDPVTFTAV 281
           VFD    + +   I W +I++A+    +   A+ LF+EM           + D ++   +
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNI 265

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSV--EHYAC--MVGVLSRARRISEATEFVSKM 337
           L ACA    + +  +I +     Y I+     + + C  ++   ++   + +A    + M
Sbjct: 266 LPACASLKALPQTKEIHS-----YAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 338 PVKPSAKVWGALLYGASISG 357
             K     W A++ G + SG
Sbjct: 321 EFKDVVS-WNAMVTGYTQSG 339



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 32/75 (42%)

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           + T ++ +Y   G    A  V +R      + W  ++ A+   G   +A+ +   ML  G
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 271 IQPDPVTFTAVLSAC 285
            +PD  T    L AC
Sbjct: 145 TKPDHFTLPYALKAC 159


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 248/453 (54%), Gaps = 33/453 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I+ WN++  GY + G Y+    L  +M        D V ++  L AC    D   G E+
Sbjct: 301 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCGS-HLDSVALIIGLGACSHIGDAKLGKEI 359

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+F I S       + NALI MY++C  L +A                     Y+     
Sbjct: 360 HSFAIRSCFGEVDTVKNALITMYSRCKDLKHA---------------------YL----- 393

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                LFQ+M+   L TWN++ISG    +R E    L+REM   G+ PN VTI+S+  L 
Sbjct: 394 -----LFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLC 448

Query: 185 SHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           +  +NL+ GKE H Y  +   +  ++ +  A++D YA++G +  A+RVFD    R  + +
Sbjct: 449 ARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTY 508

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           T++I+ Y   G+   A+ LF EM N  I+PD +T  AVLSAC+HSGLV +   +F  M  
Sbjct: 509 TSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRS 568

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            YG+ P +EH+ACM  +  RA  +++A E +  MP KP+  +W  L+    I  + E+G+
Sbjct: 569 LYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGE 628

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  + L E++PEN G Y+++AN+Y+ AG W++  +VR  M++ G+ K PG +W++   G 
Sbjct: 629 WAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGF 688

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F+  DTS   +++IY +LE L  +M+E GY+
Sbjct: 689 SPFLVDDTSNANADEIYPLLEGLTMVMKEAGYI 721



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 206/403 (51%), Gaps = 11/403 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +I+ Y + GF ++  + +++M+   + RPD  T  SVL+ACG+  D+ FG EVH  +
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVKKGI-RPDNFTYPSVLKACGEELDLGFGKEVHESI 227

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
             S IK  L + NALI MY KCG +  AR L D++ ++D VS++++IS Y   G   +A 
Sbjct: 228 NASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAF 287

Query: 129 DLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +LF  M    +      WN +  G ++   ++  L+L+ +M+  G   ++V +       
Sbjct: 288 ELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGAC 347

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           SH  + K GKEIH +A+++ +     V  A+I  Y++   L  A  +F   + +SLI W 
Sbjct: 348 SHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWN 407

Query: 245 AIISAYAAHGDASKAVS-LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +IIS    H D S+  S L  EML  GI+P+ VT  +VL  CA    +    +    M+ 
Sbjct: 408 SIISG-CCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTR 466

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGDVEL 361
           +   +  +  +  +V + +R+ ++ EA   V  M  +     + +++  YG    G   L
Sbjct: 467 REDFKDHLLLWNALVDMYARSGKVLEARR-VFDMLGERDKMTYTSMIAGYGMQGEGQAAL 525

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             F   + F+I+P++    I + +  S +G   +   + E+M+
Sbjct: 526 KLFEEMNNFQIKPDHI-TMIAVLSACSHSGLVTQGQLLFEKMR 567



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +++WNS+I+G       EE   L REML   +  P+ VT+ SVL  C + +++  
Sbjct: 398 MEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGI-EPNYVTIASVLPLCARVANLQH 456

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E H ++      K  L + NAL+ MYA+ G +  AR + D + ++D+++Y+++I+GY 
Sbjct: 457 GKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 516

Query: 120 VHGFVEKAMDLFQVMK----RPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQASGV 170
           + G  + A+ LF+ M     +P   T  AV+     SGLV     + + + +R +   G+
Sbjct: 517 MQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG--QLLFEKMRSLY--GL 572

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEI 196
            P+    + +  LF     L   KEI
Sbjct: 573 TPHLEHFACMTDLFGRAGLLNKAKEI 598



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 146/386 (37%), Gaps = 76/386 (19%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           + S+L +C     +  G ++H  +I    +    +   L+  Y+    L  A  + +  +
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
                 ++ +IS Y+ +GF +KA+  +                               ++
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAY-------------------------------KQ 191

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   G+RP+  T  S+        +L  GKE+H     +R   ++ V  A+I  Y K G 
Sbjct: 192 MVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGK 251

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF--------------------- 263
           +  A+ +FD+   R  + W ++IS YA+ G  ++A  LF                     
Sbjct: 252 VGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGG 311

Query: 264 --------------NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMSGQYGIQ 308
                         ++M   G   D V     L AC+H G      +I + A+   +G  
Sbjct: 312 YLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEV 371

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
            +V++   ++ + SR + +  A      M  K S   W +++ G       E   F+   
Sbjct: 372 DTVKN--ALITMYSRCKDLKHAYLLFQLMEAK-SLITWNSIISGCCHMDRSEEASFLLRE 428

Query: 369 --LFEIEPENTGNYIIMANLYSQAGR 392
             LF IEP    NY+ +A++     R
Sbjct: 429 MLLFGIEP----NYVTIASVLPLCAR 450


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 252/474 (53%), Gaps = 40/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++++ +VSW +MIAG  +    EE   LF  M    +  P+ +T++S++  CG +  +  
Sbjct: 258 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF-PNEITMLSLIVECGFTGALQL 316

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +++ +   + L +  AL+ MY KC  +  ARAL D   ++D             
Sbjct: 317 GKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRD------------- 363

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             +  W A++S   Q N  +   +L  +M+ SGVRP  VTI S+
Sbjct: 364 ------------------VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 405

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            SL +    L  GK +H Y  K R + +  + TA++D YAK G ++ A R+F     R +
Sbjct: 406 LSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 465

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            +W AII+ +A HG   +A+ +F EM   G++P+ +TF  +L AC+H+GLV +   +F  
Sbjct: 466 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 525

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +G+ P +EHY CMV +L RA  + EA E +  MP+KP+  VWGAL+    +  + +
Sbjct: 526 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 585

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     L EIEPEN G  ++M+N+Y+ A RW +A  VR+ MK  G+ K PG S IE +
Sbjct: 586 LGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVN 645

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
           G +  F+  D S  +  +I  +L  +   + E GYV         +DE E+E+A
Sbjct: 646 GTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETA 699



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 211/444 (47%), Gaps = 77/444 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSW++MI   S+   ++    L REM N   +RP  V +VS++     ++++  
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREM-NFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 61  GMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G  +H +VI +  +  M +    AL+ MYAKCG L  AR L + ++ K  VS        
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS-------- 265

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  W A+I+G +++NR E    L   MQ   + PN +T+ 
Sbjct: 266 -----------------------WTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML 302

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+         L+ GK++H Y ++N +  ++ +ATA++D Y K   +  A+ +FD  + R
Sbjct: 303 SLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNR 362

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------ 292
            ++IWTA++SAYA      +A +LF++M  +G++P  VT  ++LS CA +G +D      
Sbjct: 363 DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVH 422

Query: 293 -----------------------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-- 327
                                  K  DI NA +G+  I+ ++    CM   +     +  
Sbjct: 423 SYIDKERVEVDCILNTALVDMYAKCGDI-NA-AGRLFIE-AISRDICMWNAIITGFAMHG 479

Query: 328 --SEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCD---HLFEIEPENTGN 379
              EA +  ++M    VKP+   +  LL+  S +G V  GK + +   H F + P+   +
Sbjct: 480 YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQ-IEH 538

Query: 380 YIIMANLYSQAGRWDEADRVREQM 403
           Y  M +L  +AG  DEA  + + M
Sbjct: 539 YGCMVDLLGRAGLLDEAHEMIKSM 562



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 185/393 (47%), Gaps = 75/393 (19%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           SVL+ACGQ S    G E+H FV++  +  D+++ NAL+ MY +C  ++YAR + D+M ++
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D VS                               W+ +I  L +N   +  L+L+REM 
Sbjct: 159 DVVS-------------------------------WSTMIRSLSRNKEFDMALELIREMN 187

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV--ATAIIDTYAKTGF 224
              VRP+ V + S+ +LF+  +N++ GK +H Y ++N  + ++ V   TA++D YAK G 
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 247

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A+++F+    ++++ WTA+I+         +   LF  M    I P+ +T  +++  
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE 307

Query: 285 CAHSG--------------------------LVD---KAWDIFNAMSGQYGIQP-SVEHY 314
           C  +G                          LVD   K  DI NA +     Q   V  +
Sbjct: 308 CGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIW 367

Query: 315 ACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
             M+   ++A  I +A     +M    V+P+     +LL   +++G ++LGK+V  ++ +
Sbjct: 368 TAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDK 427

Query: 372 IEPE-----NTGNYIIMANLYSQAGRWDEADRV 399
              E     NT     + ++Y++ G  + A R+
Sbjct: 428 ERVEVDCILNTA----LVDMYAKCGDINAAGRL 456


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 263/485 (54%), Gaps = 40/485 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D V+WN +++GY   G  +    L   M  S  LR D VT+ S++ A   S ++  
Sbjct: 343 MLEKDTVTWNLLVSGYVHNGLVDRALDLCHVM-QSENLRFDSVTLASIMAAAADSRNLKL 401

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E H+F + ++++ D+ + +++I MYAKC  L+ AR + D  + +D + ++ +++ Y  
Sbjct: 402 GKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAE 461

Query: 121 HGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            G   + + LF  M+  GL     +WN+VI GL+   + +   D   EMQ+ G+ PN +T
Sbjct: 462 QGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLIT 521

Query: 177 ISSI-------------FSLF----------------------SHFSNLKGGKEIHGYAV 201
            +++             F  F                      S  ++L  G+ IH Y  
Sbjct: 522 WTTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYIT 581

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           ++    +  V  ++++ YAK G ++ A+RVFD    + L ++ A+IS YA HG A +A+S
Sbjct: 582 RHELSVSTPVLCSLVNMYAKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALS 641

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           LF  +    I+PD +TFT++LSAC H+GLV +  ++F  M   + I    EHY C+V +L
Sbjct: 642 LFRRLKEECIKPDEITFTSILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSIL 701

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
           SR+  + EA   +  MP +P A ++G+LL       D EL + + + L ++EP+N+GNY+
Sbjct: 702 SRSHNLDEALRIILGMPFEPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYV 761

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYL 441
            ++N Y+  G WDEA +VR  MKE  L+KIPG S I+       F A D S  ++++IY+
Sbjct: 762 ALSNAYAATGMWDEASKVRGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTKEIYM 821

Query: 442 ILERL 446
           +L  L
Sbjct: 822 MLALL 826



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 203/403 (50%), Gaps = 41/403 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +++IV+WNSMI  ++Q G   E    F EM    V  P  VT+ S L A    S I  G 
Sbjct: 244 EKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGV-APTQVTLSSFLSASANLSVIDEGK 302

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           + H   + S +++   + ++LI  Y+K G ++ A  +  EM +KD V+++ ++SGY+ +G
Sbjct: 303 QGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNG 362

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V++A+DL  V                               MQ+  +R ++VT++SI +
Sbjct: 363 LVDRALDLCHV-------------------------------MQSENLRFDSVTLASIMA 391

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   NLK GKE H + V+N  + ++ VA++IID YAK   L  A+RVFD    R LI+
Sbjct: 392 AAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIM 451

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  +++AYA  G + + + LF +M   G+ P+ +++ +V+    + G VD+A D F  M 
Sbjct: 452 WNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQ 511

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDV 359
              GI P++  +  ++  L++     EA      M    +KP++    +LL   S    +
Sbjct: 512 -SLGICPNLITWTTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASL 570

Query: 360 ELGKFVCDHLFEIEPE---NTGNYIIMANLYSQAGRWDEADRV 399
             G+ +  H +    E   +T     + N+Y++ G  ++A RV
Sbjct: 571 PHGRAI--HCYITRHELSVSTPVLCSLVNMYAKCGSINQAKRV 611



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 177/410 (43%), Gaps = 49/410 (11%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           SW +++   S+ GF +E    FREM    +L  D   +    +A G    I FG  VH +
Sbjct: 148 SWAAIMGLKSRMGFNQEALMGFREMHEYGLLL-DNFVIPIAFKASGALRWIGFGKSVHAY 206

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V++  +   +++  +L+ MY KCG  + A+ + D++ +K+ V+                 
Sbjct: 207 VVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVA----------------- 249

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WN++I    QN  +   ++   EM+  GV P  VT+SS  S  ++ 
Sbjct: 250 --------------WNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANL 295

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           S +  GK+ H  AV +  +    + +++I+ Y+K G +  A+ VF     +  + W  ++
Sbjct: 296 SVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLV 355

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMS 302
           S Y  +G   +A+ L + M +  ++ D VT  ++++A A S     G    ++ + N + 
Sbjct: 356 SGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLE 415

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV-EL 361
               +  S+         L  ARR+ +AT        K    +W  LL   +  G   E 
Sbjct: 416 SDVAVASSIIDMYAKCEKLECARRVFDAT-------AKRDLIMWNTLLAAYAEQGHSGET 468

Query: 362 GKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
            K       E  P N  + N +I+  L    G+ D+A     +M+  G+ 
Sbjct: 469 LKLFYQMQLEGLPPNVISWNSVILGLL--NKGKVDQAKDTFMEMQSLGIC 516



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 149/328 (45%), Gaps = 36/328 (10%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C     +  G ++H  ++++   I  + +I   L+  Y+KC   + A  L  ++  
Sbjct: 84  LLQGCVYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQV 143

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++E S++AI+      GF ++A+  F+ M   GL   N VI                   
Sbjct: 144 QNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVI------------------- 184

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
                 P A   S              GK +H Y VK      IYVAT+++D Y K G  
Sbjct: 185 ------PIAFKASGALRWIGF------GKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLC 232

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD+   ++++ W ++I  +  +G  ++AV  F EM   G+ P  VT ++ LSA 
Sbjct: 233 EEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSAS 292

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A+  ++D+     +A++   G++ +    + ++   S+   + +A    S+M  K +   
Sbjct: 293 ANLSVIDEGKQ-GHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTV-T 350

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIE 373
           W  L+ G   +G V+    +C H+ + E
Sbjct: 351 WNLLVSGYVHNGLVDRALDLC-HVMQSE 377


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 261/474 (55%), Gaps = 15/474 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+W+++IA + Q   YEE    F  M    V+  D V  VS L AC     +  
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVM-VDEVVAVSALSACANLLVVNM 259

Query: 61  GMEVHNFVI----ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G  +H+  +    ES+I +     NALI MY+KCG +  AR L DE    D +S++++IS
Sbjct: 260 GKLIHSLSLKIGTESYINLQ----NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 315

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+    V+ A  +F  M    + +W+++ISG  QN+  +  L L +EMQ SG +P+  T
Sbjct: 316 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 375

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S+ S  +  + L+ GK +H Y  +N    N+ + T +ID Y K G +  A  VF    
Sbjct: 376 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMI 435

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + +  W A+I   A +G    ++ +F+ M    + P+ +TF  VL AC H GLVD+   
Sbjct: 436 EKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH 495

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F +M   + IQP+V+HY CMV +L RA ++ EA E +++MP+ P    WGALL      
Sbjct: 496 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 555

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           GD E+G+ V   L E++P++ G +++++N+Y+  G+WD+   +R  M +  + KIPG S 
Sbjct: 556 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 615

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           IE +G +  F+A D +    + I  +L  +   ++ EGY      VLLD  EEE
Sbjct: 616 IEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEE 669



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 199/496 (40%), Gaps = 106/496 (21%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN MI  Y Q         L++ ML S  L  D  T   ++QAC          +VHN V
Sbjct: 46  WNMMIRAYIQTNSPHFAFTLYKSML-SNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHV 104

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM--------- 119
           ++     D+++ N LI  ++ C ++  A  + +E S  D VS+++I++GY+         
Sbjct: 105 LKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAK 164

Query: 120 ----------------------VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
                                 + G V +A  LF  M    + TW+A+I+   QN  +E 
Sbjct: 165 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 224

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            +     M   GV  + V   S  S  ++   +  GK IH  ++K   +  I +  A+I 
Sbjct: 225 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 284

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG--DASKAV--------------- 260
            Y+K G +  A+++FD      LI W ++IS Y      D +KA+               
Sbjct: 285 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 344

Query: 261 --------------SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQY 305
                         +LF EM  +G +PD  T  +V+SACA    +++  W   +A   + 
Sbjct: 345 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKW--VHAYIKRN 402

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGK 363
           G+  +V     ++ +  +   +  A E    M ++     W AL+ G +++G VE  L  
Sbjct: 403 GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVESSLDM 461

Query: 364 F--------------------VCDHL----------------FEIEPENTGNYIIMANLY 387
           F                     C H+                 +I+P N  +Y  M +L 
Sbjct: 462 FSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQP-NVKHYGCMVDLL 520

Query: 388 SQAGRWDEADRVREQM 403
            +AG+  EA+ +  +M
Sbjct: 521 GRAGKLQEAEELLNRM 536



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 76/172 (44%), Gaps = 4/172 (2%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +F  ++      WN +I   +Q N       L + M ++ +  +  T   +    S   +
Sbjct: 34  IFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRS 93

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
               K++H + +K  +D ++YV   +I+ ++    +  A RVF+       + W +I++ 
Sbjct: 94  EWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAG 153

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           Y   G+  +A  ++++M    I    +   +++      GLV +A  +F+ M
Sbjct: 154 YIEIGNVEEAKHIYHQMPERSI----IASNSMIVLFGMRGLVVEACKLFDEM 201



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 15/211 (7%)

Query: 205 YDRNIYVATAIIDTYAKTGFLH--GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           + R  Y A+ +I       F+H    +R+F+  +  +  +W  +I AY        A +L
Sbjct: 6   FIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTL 65

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
           +  ML+N +  D  T+  ++ AC+      +A  + N +  + G    V     ++   S
Sbjct: 66  YKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVL-KLGFDSDVYVRNTLINCFS 124

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382
               +++A    ++  V  S   W ++L G    G+VE  K    H++   PE +   II
Sbjct: 125 VCSNMTDACRVFNESSVLDSVS-WNSILAGYIEIGNVEEAK----HIYHQMPERS---II 176

Query: 383 MAN----LYSQAGRWDEADRVREQMKESGLA 409
            +N    L+   G   EA ++ ++M E  + 
Sbjct: 177 ASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 250/453 (55%), Gaps = 5/453 (1%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN+MI+GY   G ++E   L R+M    + + D +T  +++ AC        G +VH +
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGI-QFDDITYTTIISACANVGSFQMGKQVHAY 314

Query: 68  VIESHIKMDLWIC----NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           ++++ +  +   C    NALI +Y K   +D AR +   M  ++ ++++AI+SGY+  G 
Sbjct: 315 ILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E+A   F+ M    L T   +ISGL QN   +  L L ++M+  G  P     +   + 
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L+ G+++H   V   Y+ ++ V  A+I  YAK G +  A+ VF       L+ W
Sbjct: 435 CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            ++I+A   HG   KA+ LF++ML  G+ PD +TF  VL+AC+H+GLV+K    FN+M  
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            YGI P  +HYA MV +  RA   S A   +  MP KP A VW ALL G  I G+++LG 
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
              + LF++ P+N G Y++++N+Y+  GRW+E  +VR+ M++  + K P  SWIE    +
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKV 674

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F+  D    +   +Y  LE+L   M++ GY+
Sbjct: 675 HVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYI 707



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 163/329 (49%), Gaps = 38/329 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVL----------QACG 53
           RD V +N+MI GY+  G       LFR M      RPD  T  SVL          Q CG
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDD-FRPDDFTFTSVLSALVLFVGNEQQCG 168

Query: 54  QSSDIVFGMEVHNFVIESHIK-MDLWICNALIGMYAK--------CGSLDYARALLDEMS 104
           Q         +H  V+++ +  +   + NAL+ +Y K        C ++  AR L DEM 
Sbjct: 169 Q---------MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMP 219

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +DE++++ +I+GY+ +  +  A ++F+ M     + WNA+ISG V     +  L L R+
Sbjct: 220 KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRK 279

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN----IYVATAIIDTYA 220
           M+  G++ + +T ++I S  ++  + + GK++H Y +KN  + N    + V+ A+I  Y 
Sbjct: 280 MRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYC 339

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K   +  A+++F     R++I W AI+S Y   G   +A S F EM    +    +T T 
Sbjct: 340 KNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL----LTLTV 395

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           ++S  A +G  D+   +F  M    G +P
Sbjct: 396 MISGLAQNGFGDEGLKLFKQMRLD-GFEP 423



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 176/412 (42%), Gaps = 60/412 (14%)

Query: 49  LQACGQSSDIVFGME--VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           LQ C       F +   VH  +I S  K      N L+ MY K  +L YAR L +E+ + 
Sbjct: 18  LQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNP 77

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQ---VMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           D ++ + +I+ Y   G +E   ++F    +  R  +  +NA+I+G   N    + L+L R
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV-FYNAMITGYAHNGDGHSALELFR 136

Query: 164 EMQASGVRPNAVTISSIFSLFSHF-SNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAK 221
            M+    RP+  T +S+ S    F  N +   ++H   VK      +  V  A++  Y K
Sbjct: 137 AMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVK 196

Query: 222 TGFLHG--------AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN---- 269
                G        A+++FD    R  + WT +I+ Y  + D + A  +F  M+ N    
Sbjct: 197 RASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA 256

Query: 270 ---------------------------GIQPDPVTFTAVLSACAHSGLVD-----KAWDI 297
                                      GIQ D +T+T ++SACA+ G         A+ +
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL 316

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            N ++  +    SV +   ++ +  +  ++ EA +    MPV+ +   W A+L G   +G
Sbjct: 317 KNELNPNHSFCLSVSN--ALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVNAG 373

Query: 358 DVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +E  K      FE  P +N     +M +  +Q G  DE  ++ +QM+  G 
Sbjct: 374 RMEEAK----SFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 123/315 (39%), Gaps = 87/315 (27%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M  R+I++WN++++GY   G  EE K+ F EM   PV                       
Sbjct: 354 MPVRNIITWNAILSGYVNAGRMEEAKSFFEEM---PVKNLLTLTVMISGLAQNGFGDEGL 410

Query: 38  -----LRPDG-----VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
                +R DG           L AC     +  G ++H  ++    +  L + NA+I MY
Sbjct: 411 KLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMY 470

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           AKCG ++ A ++   M   D VS++++I+    HG   KA++LF                
Sbjct: 471 AKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFD--------------- 515

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE-----IHGYAV- 201
                           +M   GV P+ +T  ++ +  SH   ++ G+      +  Y + 
Sbjct: 516 ----------------QMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 202 --KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGDA-- 256
             ++ Y R       ++D + + G    A+ V D    +    +W A+++    HG+   
Sbjct: 560 PCEDHYAR-------MVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDL 612

Query: 257 --SKAVSLFNEMLNN 269
               A  LF  M  N
Sbjct: 613 GIEAAEQLFKLMPQN 627


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 245/457 (53%), Gaps = 35/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   DI+SWN+MI   ++     +   LF  M  S + +P+  T++S+L AC   + + F
Sbjct: 418 MKGVDIISWNTMILALARNTLRAQACELFERMRESEI-KPNSYTIISILAACEDVTCLDF 476

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V++  I+++  +  AL  MY  CG    AR L +   D+D +S          
Sbjct: 477 GRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLIS---------- 526

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+  V+NN+    L L   M  S   PN+VTI ++
Sbjct: 527 ---------------------WNAMIASYVKNNQAHKALLLFHRM-ISEAEPNSVTIINV 564

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            S F+H + L  G+ +H Y  +  +    ++ +A A I  YA+ G L  A+ +F     R
Sbjct: 565 LSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKR 624

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++I W A+I+ Y  +G  S A+  F++ML +G +P+ VTF +VLSAC+HSG ++    +F
Sbjct: 625 NIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLF 684

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           ++M   + + P + HY+C+V +L+R   I EA EF+  MP++P A VW ALL       D
Sbjct: 685 HSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSD 744

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +  K + + L ++EP N GNY++++N+Y+ AG W E  R+R  +KE GL K PG SWI 
Sbjct: 745 AKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWII 804

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
               +  F A D S  +S++IY  L  LL  MRE GY
Sbjct: 805 VKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGY 841



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 165/357 (46%), Gaps = 36/357 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFG 61
            RD   WNSMI+ Y+  G +EE   LF  M  S  ++ D  TVV +L  C + +S ++ G
Sbjct: 318 NRDAPLWNSMISAYAAFGCHEEAMDLFIRM-QSEGVKKDERTVVIMLSMCEELASGLLKG 376

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H  VI+S +++D  + NAL+ MY +   ++  + + D M   D +S           
Sbjct: 377 KSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIIS----------- 425

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WN +I  L +N       +L   M+ S ++PN+ TI SI 
Sbjct: 426 --------------------WNTMILALARNTLRAQACELFERMRESEIKPNSYTIISIL 465

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +     + L  G+ IHGY +K+  + N  + TA+ D Y   G    A+ +F+    R LI
Sbjct: 466 AACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLI 525

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I++Y  +  A KA+ LF+ M++   +P+ VT   VLS+  H   + +   +   +
Sbjct: 526 SWNAMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIINVLSSFTHLATLPQGQSLHAYV 584

Query: 302 SGQ-YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           + + + +   +      + + +R   +  A      +P K +   W A++ G  ++G
Sbjct: 585 TRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNG 640



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 147/294 (50%), Gaps = 36/294 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS RD+V WN+M+ GY   G YEE   L REM     LRP+  T+V++L AC  +S++  
Sbjct: 114 MSDRDVVLWNAMVYGYVGWGCYEEAMLLVREM-GRENLRPNSRTMVALLLACEGASELRL 172

Query: 61  GMEVHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  VH + + + +   +  +  ALIG Y +   +     L D M  ++ VS++A+ISGY 
Sbjct: 173 GRGVHGYCLRNGMFDSNPHVATALIGFYLR-FDMRVLPLLFDLMVVRNIVSWNAMISGYY 231

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G   KA++LF  M                          LV E     V+ + VT+  
Sbjct: 232 DVGDYFKALELFVQM--------------------------LVDE-----VKFDCVTMLV 260

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                +   +LK GK+IH  A+K  +  ++Y+  A+++ Y+  G L  + ++F+    R 
Sbjct: 261 AVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRD 320

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH--SGLV 291
             +W ++ISAYAA G   +A+ LF  M + G++ D  T   +LS C    SGL+
Sbjct: 321 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 374



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 141/287 (49%), Gaps = 34/287 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D   WNS+I   +     +   + + +M +  VL P+  T+  VL+AC   + +  G  
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVL-PNNTTLPLVLKACAAQNAVERGKS 74

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +  + +  D+ +  A++  Y KCG ++ AR + D MSD+D V ++A++ GY+  G 
Sbjct: 75  IHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGC 134

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+AM                                LVREM    +RPN+ T+ ++   
Sbjct: 135 YEEAM-------------------------------LLVREMGRENLRPNSRTMVALLLA 163

Query: 184 FSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
               S L+ G+ +HGY ++N  +D N +VATA+I  Y +   +     +FD    R+++ 
Sbjct: 164 CEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFD-MRVLPLLFDLMVVRNIVS 222

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           W A+IS Y   GD  KA+ LF +ML + ++ D VT    + ACA  G
Sbjct: 223 WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELG 269


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 259/454 (57%), Gaps = 33/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D++SW ++IAGY+Q  F+ E   LFR+ +    +  D + + SVL+AC       F
Sbjct: 410 MHEKDLISWTTIIAGYAQNEFHLEAINLFRK-VQVKGMDVDPMMIGSVLRACSGLKSRNF 468

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H +V +  +  D+ + NA++ +Y + G +DYAR   + +  KD VS          
Sbjct: 469 IREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS---------- 517

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++I+  V N      L+L   ++ + ++P+++ I S 
Sbjct: 518 ---------------------WTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISA 556

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ S+LK GKEIHG+ ++  +     +A++++D YA  G +  ++++F   K R L
Sbjct: 557 LSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDL 616

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+WT++I+A   HG  +KA++LF +M +  + PD +TF A+L AC+HSGL+ +    F  
Sbjct: 617 ILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEI 676

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P  EHYACMV +LSR+  + EA  FV  MP+KPS+++W ALL    I  + E
Sbjct: 677 MKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKE 736

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     L + + EN+G Y +++N+++  GRW++ + VR +MK +GL K PG SWIE  
Sbjct: 737 LGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVD 796

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
             + +F+A+D S  +++ IYL L +   L+ ++G
Sbjct: 797 NKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKG 830



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 200/433 (46%), Gaps = 72/433 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN++++G  Q   Y +    FR+M NS   +PD V+V++++ A G+S +++ 
Sbjct: 309 MLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ-KPDQVSVLNLIAASGRSGNLLK 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH + I + +  ++ I N L+ MYAKC  + Y     + M +KD +S++ II+GY  
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGY-- 425

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN  H   ++L R++Q  G+  + + I S+
Sbjct: 426 -----------------------------AQNEFHLEAINLFRKVQVKGMDVDPMMIGSV 456

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S   +    +EIHGY  K R   +I +  AI++ Y + G +  A+R F+  + + +
Sbjct: 457 LRACSGLKSRNFIREIHGYVFK-RDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDI 515

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI--F 298
           + WT++I+    +G   +A+ LF  +    IQPD +   + LSA A+   + K  +I  F
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGF 575

Query: 299 NAMSGQYGIQP----SVEHYACMVGVLSRARRI-------------------------SE 329
               G +   P     V+ YAC  G +  +R++                         ++
Sbjct: 576 LIRKGFFLEGPIASSLVDMYAC-CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNK 634

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEPENTGNYIIM 383
           A     KM    V P    + ALLY  S SG +  GK    +  + +++EP    +Y  M
Sbjct: 635 AIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE-HYACM 693

Query: 384 ANLYSQAGRWDEA 396
            +L S++   +EA
Sbjct: 694 VDLLSRSNSLEEA 706



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 144/286 (50%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D VSWNS+I+ +   G   E  +LFR M    V   +  T V+ LQ     S +  
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGV-ASNTYTFVAALQGVEDPSFVKL 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +H  V++S+   D+++ NALI MYAKCG ++ A  + + M  +D VS++ ++S    
Sbjct: 267 GMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLS---- 322

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                      GLVQN  +   L+  R+MQ SG +P+ V++ ++
Sbjct: 323 ---------------------------GLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +      NL  GKE+H YA++N  D N+ +   ++D YAK   +      F+    + L
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           I WT II+ YA +    +A++LF ++   G+  DP+   +VL AC+
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 155/343 (45%), Gaps = 38/343 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R I SWN+++  +   G Y E   L+++M    V   D  T  SVL+ACG   +   
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGV-AIDACTFPSVLKACGALGESRL 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   ++      +++CNALI MY KCG L  AR L D +                 
Sbjct: 164 GAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGI----------------- 206

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                       +M++    +WN++IS  V        L L R MQ  GV  N  T  + 
Sbjct: 207 ------------MMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  S +K G  IHG  +K+ +  ++YVA A+I  YAK G +  A RVF+    R  
Sbjct: 255 LQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDY 314

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK-----AW 295
           + W  ++S    +   S A++ F +M N+G +PD V+   +++A   SG + K     A+
Sbjct: 315 VSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAY 374

Query: 296 DIFNAMSGQYGIQPS-VEHYA--CMVGVLSRARRISEATEFVS 335
            I N +     I  + V+ YA  C V  +  A       + +S
Sbjct: 375 AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLIS 417



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 49/313 (15%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L  C  +  +  G ++H  +++SH+    ++   L+ MY KCGSL  A  + DEMS++ 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                                          + +WNA++   V + ++   ++L ++M+ 
Sbjct: 110 -------------------------------IFSWNALMGAFVSSGKYLEAIELYKDMRV 138

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV  +A T  S+          + G EIHG AVK  Y   ++V  A+I  Y K G L G
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGG 198

Query: 228 AQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           A+ +FD    +    + W +IISA+ A G+  +A+SLF  M   G+  +  TF A L   
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYA------CMVGVLSRARRISEATEFVSKMPV 339
                V           G +G      H+A       ++ + ++  R+ +A      M  
Sbjct: 259 EDPSFVKLGM-------GIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLC 311

Query: 340 KPSAKVWGALLYG 352
           +     W  LL G
Sbjct: 312 RDYVS-WNTLLSG 323


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 261/469 (55%), Gaps = 14/469 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN++I GY+Q G  +E + LF E   SPV   D  T  +++    Q+  +  
Sbjct: 240 MKVRDVVSWNTIITGYAQNGEIDEARQLFDE---SPV--HDVFTWTAMVSGYIQNRMVEE 294

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+ + + E +     W  NA++  Y +   ++ A+ L D M  ++  +++ +I+GY  
Sbjct: 295 ARELFDRMPERNEVS--W--NAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQ 350

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A +LF  M +    +W A+I+G  Q+      L L   M+  G R N  + SS 
Sbjct: 351 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSA 410

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ GK++HG  VK  Y+   +V  A++  Y K G +  A  +F    G+ +
Sbjct: 411 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 470

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y+ HG   +A+  F  M   G++PD  T  AVLSAC+H+GLVDK    F+ 
Sbjct: 471 VSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHT 530

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG++P+ +HYACMV +L RA  + EA   +  MP +P A +WG LL  + + G+ E
Sbjct: 531 MTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 590

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   D +F +EPEN+G Y++++NLY+ +GRW +  ++R +M++ G+ K+PG SWIE  
Sbjct: 591 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 650

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
               +F   D    + ++I+  LE L   M++ GY     V+L +VEEE
Sbjct: 651 NKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEE 699



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 197/448 (43%), Gaps = 72/448 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ SWN++++GY+Q G  ++ + +F  M     +  + +    V  +  + + ++F
Sbjct: 147 MPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF 206

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G    N+ + S      W C  L+G + K   +  AR   D M  +D VS++ II+GY  
Sbjct: 207 GSR-ENWALVS------WNC--LLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQ 257

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +++A  LF       + TW A++SG +QN   E   +L   M       N V+ +++
Sbjct: 258 NGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAM 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            + +     ++  KE+        +D    RN+     +I  YA+ G +  A+ +FD+  
Sbjct: 314 LAGYVQGERVEMAKEL--------FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP 365

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA---------- 286
            R  + W A+I+ Y+  G + +A+ LF  M   G + +  +F++ LS CA          
Sbjct: 366 KRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQ 425

Query: 287 -------------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
                                      G +++A D+F  M+G+      +  +  M+   
Sbjct: 426 LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-----DIVSWNTMIAGY 480

Query: 322 SRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGK---FVCDHLFEIEPE 375
           SR     EA  F   M    +KP      A+L   S +G V+ G+         + + P 
Sbjct: 481 SRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRP- 539

Query: 376 NTGNYIIMANLYSQAGRWDEADRVREQM 403
           N+ +Y  M +L  +AG  +EA  + + M
Sbjct: 540 NSQHYACMVDLLGRAGLLEEAHNLMKNM 567



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 25/329 (7%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           NA+I  Y + G  + AR L DEM ++D VS++ +I GY+ +  + KA +LF+ M    + 
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN ++SG  QN      +D  R +       N V+ +++ S +   S L+    + G  
Sbjct: 154 SWNTILSGYAQN----GCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFG-- 207

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
             +R +  +     ++  + K   +  A++ FD  K R ++ W  II+ YA +G+  +A 
Sbjct: 208 --SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEAR 265

Query: 261 SLFNEMLNNGIQP--DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
            LF+E       P  D  T+TA++S    + +V++A ++F+ M  +  +      +  M+
Sbjct: 266 QLFDE------SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-----WNAML 314

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
               +  R+  A E    MP + +   W  ++ G +  G +   K + D + + +P    
Sbjct: 315 AGYVQGERVEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV--- 370

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESG 407
           ++  M   YSQ+G   EA R+   M+  G
Sbjct: 371 SWAAMIAGYSQSGHSYEALRLFVLMEREG 399



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 163/359 (45%), Gaps = 39/359 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI  WN  I+ Y + G   E   +F+ M      R   V+  +++    ++ +     E+
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMP-----RWSSVSYNAMISGYLRNGEF----EL 108

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              + +   + DL   N +I  Y +  +L  AR L + M ++D  S++ I+SGY  +G V
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCV 168

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A  +F  M      +WNA++S  VQN++ E    L       G R N   +S      
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVS------ 216

Query: 185 SHFSNLKGG--KEIHGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
             ++ L GG  K+      +  +D    R++     II  YA+ G +  A+++FD     
Sbjct: 217 --WNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH 274

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +  WTA++S Y  +    +A  LF+ M     + + V++ A+L+       V+ A ++F
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGERVEMAKELF 330

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           + M  +     +V  +  M+   ++  +ISEA     KMP K     W A++ G S SG
Sbjct: 331 DVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSG 383



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 46/332 (13%)

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
           L +  D D   ++  IS YM  G   +A+ +F+ M R    ++NA+ISG ++N   E   
Sbjct: 51  LPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELAR 110

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
            L  EM    +    V+ + +   +    NL   +E+     +   +R++     I+  Y
Sbjct: 111 MLFDEMPERDL----VSWNVMIKGYVRNRNLGKAREL----FERMPERDVCSWNTILSGY 162

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF-----------NEMLN 268
           A+ G +  A+RVFDR   ++ + W A++SAY  +    +A  LF           N +L 
Sbjct: 163 AQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLG 222

Query: 269 NGIQP----------------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE 312
             ++                 D V++  +++  A +G +D+A  +F+           V 
Sbjct: 223 GFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH-----DVF 277

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
            +  MV    + R + EA E   +MP +     W A+L G      VE+ K     LF++
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMPERNEVS-WNAMLAGYVQGERVEMAK----ELFDV 332

Query: 373 EP-ENTGNYIIMANLYSQAGRWDEADRVREQM 403
            P  N   +  M   Y+Q G+  EA  + ++M
Sbjct: 333 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 364


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 255/457 (55%), Gaps = 1/457 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+VSW +++ GY++GG  +E   +F  M+ +    P+ VT+V+   A GQ   +  
Sbjct: 192 MADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGL 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  V+ES ++M + + NAL+ M+ KCG +  A+ + D M  KD  S+++++S Y  
Sbjct: 252 GRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAK 311

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF+ +      +W+ +++   Q N  E  + +  +M A+GV P   T+ S+
Sbjct: 312 CGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSV 371

Query: 181 FSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +    L  G+ ++  Y V ++ +  + ++ A ID +AK G +  A R+F   + ++
Sbjct: 372 LSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKN 431

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A+A HG + +A+ LF +    GI PD +T+  VLSAC+HSGLV +    F 
Sbjct: 432 VVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFK 491

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI+P  EHYACM+ +L +   + EA E    MPV      WGALL    + G+V
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+GK   D L  ++P ++G Y++M+ +Y+   +W +   +R  M++ G+ K PG S IE 
Sbjct: 552 EIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEV 611

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            G    F+A D S   SE IY  LE +    + EGY+
Sbjct: 612 DGKFHEFLAADVSHAHSEDIYAALENIYLHSKLEGYI 648



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 187/413 (45%), Gaps = 39/413 (9%)

Query: 11  SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70
           +M+ G+ + G      ALFR +L    L  D  T+V  ++A   SS     +    F   
Sbjct: 102 TMMRGFLRAGKPAHALALFRRVLRDR-LPADARTIVFAVKAATTSSSPAEAIHCVAFK-R 159

Query: 71  SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDL 130
             I   + + NAL+ MYA   SL  AR L DEM+D+D VS++ ++ GY   G  ++A  +
Sbjct: 160 GFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRV 219

Query: 131 FQVMKRPGLSTWNAVIS----------GLVQNNR--HEAVLDLVREMQASGVRPNAVTIS 178
           F  M   G    N V            GL+   R  H+ V++       SGVR +    +
Sbjct: 220 FCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVE-------SGVRMSVNLEN 272

Query: 179 SIFSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           ++  +F     +   KEI  G  +K     ++Y  T+++  YAK G L  A ++F     
Sbjct: 273 ALVDMFGKCGCVASAKEIFDGMPIK-----DVYSWTSMVSAYAKCGDLENAGKLFKEIPN 327

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+ + W+ +++AY+      +A+ +FN+M+  G++P   T  +VLSACA  G +D    +
Sbjct: 328 RNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCL 387

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++A    + ++ +V      + + ++   +  A+     M  K +   W  ++   ++ G
Sbjct: 388 YDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDK-NVVSWNTMIVAHALHG 446

Query: 358 DVELGKFVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             E       HLF+      I P+    YI + +  S +G   E     ++MK
Sbjct: 447 QSEEAL----HLFQKFKAIGIFPDEI-TYIGVLSACSHSGLVSEGRYHFKEMK 494


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 256/450 (56%), Gaps = 36/450 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECK---ALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           D+V +N+MI GYS+ G   E      +F +M    ++RP  +T VS+L+A    + +   
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHDALNIFHDM-RFRLIRPSLLTFVSLLRASASLTSLGLS 473

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H  + +  + +D++  +ALI +Y+ C  L  +R + DEM  KD              
Sbjct: 474 KQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKD-------------- 519

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                            L  WN++ SG VQ + +E  L+L  E+Q S  RP+  T   + 
Sbjct: 520 -----------------LVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMV 562

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +   + ++L+ G+E H   +K   + N Y+  A++D YAK G    A + FD    R ++
Sbjct: 563 TAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVV 622

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W ++IS+YA HG+  KA+ +  +M+  GI+P+ +TF  VLSAC+H+GLV+     F  M
Sbjct: 623 CWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             ++GI+P  EHY CMV +L RA R++EA E + KMP KP+A VW +LL G + +G+VEL
Sbjct: 683 L-RFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVEL 741

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            ++  +     +P+++G++ +++N+Y+  G W +A +VRE+MK  G+ K PGRSWIE + 
Sbjct: 742 AEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINK 801

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            +  F++KD S  K+ QIY +L+ LL  +R
Sbjct: 802 EVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 203/438 (46%), Gaps = 65/438 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++I+SW ++++GY Q   ++E   LF  M     L+PD     S+L +C     + F
Sbjct: 310 MPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFG-LKPDMFACSSILTSCASLHALEF 368

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH + I++++  D ++ N+LI MYAKC  L  AR + D  +  D V ++A+I GY  
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSR 428

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                            Q   H+A L++  +M+   +RP+ +T  S+
Sbjct: 429 LG---------------------------TQWELHDA-LNIFHDMRFRLIRPSLLTFVSL 460

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L   K+IHG   K   + +I+  +A+I  Y+    L  ++ VFD  K + L
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDL 520

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           +IW ++ S Y    +  +A++LF E+  +  +PD  TF  +++A             H  
Sbjct: 521 VIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQ 580

Query: 290 LVDKAWD----IFNAMSGQYGI--QPSVEHYA----------CMVGVLSRARRISE---A 330
           L+ +  +    I NA+   Y     P   H A          C   V+S      E   A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKA 640

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVE--LGKFVCDHLFEIEPENTGNYIIMAN 385
            + + KM    ++P+   +  +L   S +G VE  L +F     F IEPE T +Y+ M +
Sbjct: 641 LQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVS 699

Query: 386 LYSQAGRWDEADRVREQM 403
           L  +AGR +EA  + E+M
Sbjct: 700 LLGRAGRLNEARELIEKM 717



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 145/290 (50%), Gaps = 37/290 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC----GQSS 56
           M +R++V+W++M++  +  GFYEE   +F +   +    P+   + S +QAC    G   
Sbjct: 105 MPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGR 164

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +VF  ++ +F+++S    D+++   LI  Y K G++DYAR + D + +K  V       
Sbjct: 165 WMVF--QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTV------- 215

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                                   TW  +ISG V+  R    L L  ++    V P+   
Sbjct: 216 ------------------------TWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYI 251

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +S++ S  S    L+GGK+IH + ++  ++++  +   +ID+Y K G +  A ++FD   
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMP 311

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            +++I WT ++S Y  +    +A+ LF  M   G++PD    +++L++CA
Sbjct: 312 NKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 37/355 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++  V+W +MI+G  + G       LF +++   V+ PDG  + +VL AC     +  
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVV-PDGYILSTVLSACSILPFLEG 267

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  ++    + D  + N LI  Y KCG                             
Sbjct: 268 GKQIHAHILRYGHEKDASLMNVLIDSYVKCGR---------------------------- 299

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V  A  LF  M    + +W  ++SG  QN+ H+  ++L   M   G++P+    SSI
Sbjct: 300 ---VRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSI 356

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ G ++H Y +K     + YV  ++ID YAK   L  A++VFD F    +
Sbjct: 357 LTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDV 416

Query: 241 IIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +++ A+I  Y+  G   +   A+++F++M    I+P  +TF ++L A A    +  +  I
Sbjct: 417 VLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQI 476

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              M  ++G+   +   + ++ V S    + ++     +M VK    +W ++  G
Sbjct: 477 HGLMF-KFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLV-IWNSMFSG 529



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 143/309 (46%), Gaps = 38/309 (12%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +LQ       +++   VH  +I S +++D ++ N L+ +Y++ G + YAR + ++M +++
Sbjct: 50  LLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERN 109

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            V++S ++S    HGF E+++ +F                           LD  R  + 
Sbjct: 110 LVTWSTMVSACNHHGFYEESLVVF---------------------------LDFWRTRKN 142

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGK----EIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           S   PN   +SS     S       G+    ++  + VK+R+DR++YV T +ID Y K G
Sbjct: 143 S---PNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEG 197

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +  A+ VFD    +S + WT +IS     G +  ++ LF +++   + PD    + VLS
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLS 257

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           AC+    ++    I +A   +YG +        ++    +  R+  A +    MP K + 
Sbjct: 258 ACSILPFLEGGKQI-HAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNK-NI 315

Query: 344 KVWGALLYG 352
             W  LL G
Sbjct: 316 ISWTTLLSG 324


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 256/457 (56%), Gaps = 4/457 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+M+ GY+Q G   E    ++E   S + + +  +   +L AC +S  +  
Sbjct: 139 MPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGI-KFNEFSFAGLLTACVKSRQLQL 197

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             + H  V+ +    ++ +  ++I  YAKCG ++ A+   DEM+ KD   ++ +ISGY  
Sbjct: 198 NRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAK 257

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF  M      +W A+I+G V+       LDL R+M A GV+P   T SS 
Sbjct: 258 LGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSC 317

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-S 239
               +  ++L+ GKEIHGY ++     N  V +++ID Y+K+G L  ++RVF     +  
Sbjct: 318 LCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHD 377

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            + W  +ISA A HG   KA+ + ++M+   +QP+  T   +L+AC+HSGLV++    F 
Sbjct: 378 CVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFE 437

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M+ Q+GI P  EHYAC++ +L RA    E    + +MP +P   +W A+L    I G+ 
Sbjct: 438 SMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNE 497

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELGK   D L +++PE++  YI+++++Y+  G+W+  +++R  MK+  + K    SWIE 
Sbjct: 498 ELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEI 557

Query: 420 SGGLQSFVAKDTS--GDKSEQIYLILERLLGLMREEG 454
              +++F   D S    + E+IY IL  L  ++ EE 
Sbjct: 558 EKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 186/374 (49%), Gaps = 17/374 (4%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           KR I    S ++ ++     E  +A+ R E L    +R     + S+LQ CG +  +  G
Sbjct: 8   KRPICVAQSFLSKHATKA--ELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQG 65

Query: 62  MEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +H  + I    + +  + N LIGMY KCG    A  + D+M  ++  S++ ++SGY+ 
Sbjct: 66  KWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVK 125

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPNAVTISS 179
            G + +A  +F  M    + +WN ++ G  Q+ N HEA L   +E + SG++ N  + + 
Sbjct: 126 SGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEA-LWFYKEFRRSGIKFNEFSFAG 184

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + +       L+  ++ HG  +   +  N+ ++ +IID YAK G +  A+R FD    + 
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + IWT +IS YA  GD   A  LF EM     + +PV++TA+++     G  ++A D+F 
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEM----PEKNPVSWTALIAGYVRQGSGNRALDLFR 300

Query: 300 AMSGQYGIQPSVEHYA---CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            M    G++P    ++   C    ++  R   E   ++ +  V+P+A V  +L+   S S
Sbjct: 301 KMIA-LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKS 359

Query: 357 GDVELGKFV---CD 367
           G +E  + V   CD
Sbjct: 360 GSLEASERVFRICD 373


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 249/455 (54%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R+ V+W+++I G+       E   LF++ML   +      +V S L+ C   +D+  
Sbjct: 265 MTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRM 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S I  DL   N+L+ MYAK G ++ A  L DE++ KD +SY A++     
Sbjct: 325 GTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALL----- 379

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                     SG VQN + E    + ++MQA  V+P+  T+ S+
Sbjct: 380 --------------------------SGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSL 413

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G+  HG  +         +  ++ID YAK G +  +++VFD+   R +
Sbjct: 414 IPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDI 473

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF  M N G +PD VTF  +++AC+HSGLV +    F+ 
Sbjct: 474 VSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDT 533

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+ +YGI P +EHY CMV +L+R   + EA +F+  MP+K   +VWGALL    I  +++
Sbjct: 534 MTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNID 593

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + ++ PE TGN+++++N++S AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 594 LGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEIN 653

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S   S  IY  L+ +L  +++ GY
Sbjct: 654 GSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGY 688



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 217/509 (42%), Gaps = 97/509 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+WN+M+AGY+  G Y    A   +M +   LRP+  T+VS+L    Q   +  
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 61  GMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G  VH + + +++  +   + I  AL+ MYAKC  L YA  +   M+ ++EV++SA+I G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           +++   + +A +LF+ M   G+                                 +A ++
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFL------------------------------SATSV 309

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +S   + +  ++L+ G ++H    K+    ++    +++  YAK G ++ A  +FD    
Sbjct: 310 ASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAI 369

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVD 292
           +  I + A++S Y  +G A +A  +F +M    +QPD  T  +++ AC+H      G   
Sbjct: 370 KDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCS 429

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
               I   ++ +  I  S      ++ + ++  RI  + +   KMP +     W  ++ G
Sbjct: 430 HGSVIIRGLALETSICNS------LIDMYAKCGRIDLSRQVFDKMPARDIVS-WNTMIAG 482

Query: 353 ASISGDVELGK--------------------FVC--------------DHLFEIEPENTG 378
             I G   LGK                    F+C               H F+      G
Sbjct: 483 YGIHG---LGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 539

Query: 379 ------NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTS 432
                 +YI M +L ++ G  DEA +  + M        P ++ +   G L        +
Sbjct: 540 ILPRMEHYICMVDLLARGGFLDEAYQFIQSM--------PLKADVRVWGALLGACRIHKN 591

Query: 433 GDKSEQIYLILERLLGLMREEGYVLLDEV 461
            D  +Q+  ++++ LG      +VLL  +
Sbjct: 592 IDLGKQVSRMIQK-LGPEGTGNFVLLSNI 619



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 165/364 (45%), Gaps = 44/364 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D  ++N++I  YS  G +     L+R ML   V  P+  T   VL+AC   +D+  G  +
Sbjct: 63  DARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV-PPNKYTFPFVLKACSALADLCAGRTI 121

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H       +  DL++  ALI +Y +C     A  +  +M  +D V+++A+++GY  HG  
Sbjct: 122 HAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMY 181

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                         H A+  L+      G+RPNA T+ S+  L 
Sbjct: 182 ------------------------------HHAIAHLLDMQDRGGLRPNASTLVSLLPLL 211

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +    L  G  +H Y ++   D+N   + + TA++D YAK   L  A RVF     R+ +
Sbjct: 212 AQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEV 271

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA-VLSACAHSGLVD-KAWDIFN 299
            W+A+I  +      ++A +LF +ML  G+     T  A  L  CA   L D +     +
Sbjct: 272 TWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCA--SLADLRMGTQLH 329

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           A+  + GI   +     ++ + ++A  I+EAT    ++ +K +      + YGA +SG V
Sbjct: 330 ALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT------ISYGALLSGYV 383

Query: 360 ELGK 363
           + GK
Sbjct: 384 QNGK 387



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           KD   +   +  ++  G +  A  +F  +  P    +NA+I          A +DL R M
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM 90

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
               V PN  T   +    S  ++L  G+ IH +A       +++V+TA+ID Y +    
Sbjct: 91  LYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARF 150

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSA 284
             A  VF +   R ++ W A+++ YA HG    A++   +M +  G++P+  T  ++L  
Sbjct: 151 GPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPL 210

Query: 285 CAHSG 289
            A  G
Sbjct: 211 LAQHG 215


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 251/457 (54%), Gaps = 32/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+VSWN+M+  Y + G   E   + R+M+    + P+ VT+  VL AC    D+V 
Sbjct: 189 IPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVL 248

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  +   + ++ D  + +AL+GMY KCG +  AR + D + DKD V+          
Sbjct: 249 GRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVA---------- 298

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  QN      + L   M+ +GV P+ +T++ +
Sbjct: 299 ---------------------WNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGV 337

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+ G E+ GYA       N+YV TA++D YAK G L  A  VF + + +++
Sbjct: 338 LSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNV 397

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W A+I   A +G   +A+  F  M N +G++PD +TF  VLSAC H+GLV      FN
Sbjct: 398 ASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFN 457

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ ++ I P +EHY+CMV +L+R+  + E  +F+ K+P K  A + GALL       +V
Sbjct: 458 SLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNV 517

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+ V + + ++EP N+ NY++ + +Y+ +GR D++ ++R  M+E G+ K PG SW+E 
Sbjct: 518 EIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKTPGCSWVEI 577

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           SG +  F A D     ++ +Y +L+ L+  MR EGYV
Sbjct: 578 SGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 614



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           N +D  ++   ++I  Y+       A++VF+    R ++ W A++ AY   G   +   +
Sbjct: 160 NSHDHTVH---SLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRM 216

Query: 263 FNEMLNNG-IQPDPVTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
             +M+ +G + P+ VT   VL+AC   G LV   W      S   G++      + +VG+
Sbjct: 217 LRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRW--VEEWSKSAGMETDSLVGSALVGM 274

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             +   I+EA      + +      W A++ G + +G
Sbjct: 275 YEKCGEIAEARRVFDSI-IDKDVVAWNAMITGYAQNG 310


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 259/480 (53%), Gaps = 50/480 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V+W++ I+GY+Q G   E   + R+ML+S + +P+ VT++SVL  C     ++ G 
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGCASVGALMHGK 385

Query: 63  EVHNFVIESHIKMDL---------WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
           E+H + I+    MDL          + N LI MYAKC  +D ARA+ D +S K+      
Sbjct: 386 EIHCYAIK--YPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKER----- 438

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVR 171
                                    + TW  +I G  Q+      L+L+ EM  +    R
Sbjct: 439 ------------------------DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTR 474

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQR 230
           PNA TIS      +  + L  GK+IH YA++N+ +   ++V+  +ID YAK G +  A+ 
Sbjct: 475 PNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARL 534

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD    ++ + WT++++ Y  HG   +A+ +F EM   G + D VT   VL AC+HSG+
Sbjct: 535 VFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGM 594

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           +D+  + FN M   +G+ P  EHYAC+V +L RA R++ A   + +MP++P   VW ALL
Sbjct: 595 IDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALL 654

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               I G VELG++    + E+   N G+Y +++N+Y+ AGRW +  R+R  M+  G+ K
Sbjct: 655 SCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKK 714

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL----ERL--LGLMREEGYVLLDEVEEE 464
            PG SW+E   G  +F   D +   +++IY +L    +R+  +G + E G+ L D  +EE
Sbjct: 715 RPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEE 774



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 209/453 (46%), Gaps = 57/453 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSWNS+I  Y++ G  +    +F +M N    RPD +T+V+VL  C        G + 
Sbjct: 192 DVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQF 251

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H F + S +  ++++ N L+ MYAK G +D A  +   M  KD VS++A+++GY   G  
Sbjct: 252 HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRF 311

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           E A+ LF+ M+   +     TW+A ISG  Q       L + R+M +SG++PN VT+ S+
Sbjct: 312 EDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 181 FSLFSHFSNLKGGKEIHGYAV-------KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            S  +    L  GKEIH YA+       KN +     V   +ID YAK   +  A+ +FD
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFD 431

Query: 234 RF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT--AVLSACAHSG 289
               K R ++ WT +I  Y+ HGDA+KA+ L +EM     Q  P  FT    L ACA   
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491

Query: 290 LVDKAWDIFN-AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
            +     I   A+  Q    P      C++ + ++   I +A      M ++ +   W +
Sbjct: 492 ALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTS 549

Query: 349 LL--YGASISGDVELGKF--------------------VCDHL----------------F 370
           L+  YG    G+  LG F                     C H                 F
Sbjct: 550 LMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDF 609

Query: 371 EIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            + P    +Y  + +L  +AGR + A R+ E+M
Sbjct: 610 GVSP-GPEHYACLVDLLGRAGRLNAALRLIEEM 641



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 184/428 (42%), Gaps = 49/428 (11%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +  WNS+I  Y   G   +C + F  +++S    PD  T   V +ACG+ S +  G   H
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFC-LMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSH 150

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
                +    ++++ NAL+ MY++CGSL  AR + DEM   D VS+++II  Y   G  +
Sbjct: 151 ALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPK 210

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A+++F  M                                  G RP+ +T+ ++    +
Sbjct: 211 MALEMFSKMT------------------------------NEFGFRPDDITLVNVLPPCA 240

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                  GK+ HG+AV +   +N++V   ++D YAK G +  A  VF     + ++ W A
Sbjct: 241 SVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNA 300

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +++ Y+  G    AV LF +M    I+ D VT++A +S  A  GL  +A  +   M    
Sbjct: 301 MVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS- 359

Query: 306 GIQP------SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK-------VWGALLYG 352
           GI+P      SV      VG L   + I     +  K P+            V   L+  
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIH---CYAIKYPMDLRKNGHGDENMVINQLIDM 416

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            +    V++ + + D L   E  +   + +M   YSQ G  ++A  +  +M E      P
Sbjct: 417 YAKCKKVDIARAMFDSLSPKE-RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 413 GRSWIECS 420
               I C+
Sbjct: 476 NAFTISCA 483



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 125/297 (42%), Gaps = 39/297 (13%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           S +IS Y+  G +  A+ L +       G+  WN++I     N R    L     M +  
Sbjct: 63  SHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLS 122

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
             P+  T   +F      S+++ G   H  +    +  N++V  A++  Y++ G L  A+
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDAR 182

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHS 288
           +VFD      ++ W +II +YA  G    A+ +F++M N  G +PD +T   VL  CA  
Sbjct: 183 KVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASV 242

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G        F+  +    +  ++    C+V + ++   + EA    S MPVK     W A
Sbjct: 243 G-TRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS-WNA 300

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           ++ G                                  YSQ GR+++A R+ EQM+E
Sbjct: 301 MVAG----------------------------------YSQIGRFEDAVRLFEQMQE 323


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 254/459 (55%), Gaps = 38/459 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF--- 60
           R I  +N++    S  G  EE   ++R M NS  +  D  T   VL+AC  S   V    
Sbjct: 134 RTIYVYNALFRALSLAGHGEEVLNMYRRM-NSIGIPSDRFTYTYVLKACVASECFVSLLN 192

Query: 61  -GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G E+H  ++       + I   L+ MYAK G +  A  + ++M  K+ VS         
Sbjct: 193 KGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVS--------- 243

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVRPNAVTI 177
                                 W+A+I+   +N +    L+L RE+  +   + PN+VT+
Sbjct: 244 ----------------------WSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTM 281

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+    +  + L+ G+ IHGY ++   D  + V +A++  YA+ G L   QRVFD+   
Sbjct: 282 VSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDK 341

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R ++ W ++IS+Y  HG   KA+ +F EM  NG++P P++F +VL AC+H+GLVD+   +
Sbjct: 342 RDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKML 401

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN+M   +GI PSVEHYACMV +L RA R+ EA + +  M ++P  KVWG+LL    I  
Sbjct: 402 FNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHC 461

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +VEL +     LF++EP N GNY+++A++Y++AG WD   RV++ ++  GL K+PGRSWI
Sbjct: 462 NVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWI 521

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E    + SFV+ D    + EQ++ +L +L   ++EEGYV
Sbjct: 522 EVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYV 560



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 111/202 (54%), Gaps = 6/202 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFRE-MLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +++VSW++MIA Y++ G   E   LFRE ML +  L P+ VT+VSVLQAC   + + 
Sbjct: 236 MPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALE 295

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H +++   +   L + +AL+ MYA+CG L+  + + D+M  +D VS++++IS Y 
Sbjct: 296 QGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYG 355

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD----LVREMQ-ASGVRPNA 174
           VHGF +KA+ +F+ M   G+         ++    H  ++D    L   M  A G+ P+ 
Sbjct: 356 VHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSV 415

Query: 175 VTISSIFSLFSHFSNLKGGKEI 196
              + +  L    + L+   +I
Sbjct: 416 EHYACMVDLLGRANRLEEAAKI 437



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 172/406 (42%), Gaps = 72/406 (17%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P   T   ++ +C   + ++    VH  ++E+    D ++   LI MY+   S+D AR +
Sbjct: 68  PAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKV 127

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D+  ++                                +  +NA+   L      E VL
Sbjct: 128 FDKTRNRT-------------------------------IYVYNALFRALSLAGHGEEVL 156

Query: 160 DLVREMQASGVRPNAVTISSIFSLF----SHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
           ++ R M + G+  +  T + +           S L  G+EIH + +++ YD  +++ T +
Sbjct: 157 NMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTL 216

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQP 273
           +D YAK G +  A  VF++   ++++ W+A+I+ YA +G A +A+ LF E++     + P
Sbjct: 217 VDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCP 276

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAM--SGQYGIQPSVEHYACM---VGVLSRARRI- 327
           + VT  +VL ACA    +++   I   +   G   I P +     M    G L   +R+ 
Sbjct: 277 NSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVF 336

Query: 328 ------------------------SEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
                                    +A     +M    V+PS   + ++L   S +G V+
Sbjct: 337 DQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVD 396

Query: 361 LGKFVCD--HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            GK + +  H+      +  +Y  M +L  +A R +EA ++ E M+
Sbjct: 397 EGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMR 442



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 104/197 (52%), Gaps = 8/197 (4%)

Query: 160 DLVREMQASGVRPNAV--TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           +L + ++   + PN    T   +    +H ++L   + +H + ++N +D++ ++AT +I+
Sbjct: 54  NLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLIN 113

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            Y+    +  A++VFD+ + R++ ++ A+  A +  G   + ++++  M + GI  D  T
Sbjct: 114 MYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFT 173

Query: 278 FTAVLSACAHS----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           +T VL AC  S     L++K  +I +A   ++G    V     +V + ++   +S A+  
Sbjct: 174 YTYVLKACVASECFVSLLNKGREI-HAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCV 232

Query: 334 VSKMPVKPSAKVWGALL 350
            ++MPVK +   W A++
Sbjct: 233 FNQMPVK-NVVSWSAMI 248


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 264/473 (55%), Gaps = 21/473 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R +  WN+M+ GY+Q G  EE   LF  M     + P   T+  VL AC +S        
Sbjct: 338 RQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEA 397

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V++  +  + ++ NAL+ +YA+ G ++ AR +   +  +D VS++ +I+G +V G 
Sbjct: 398 VHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGH 457

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +  A  L + M++ G  T      G+   +    V             PN VT+ ++   
Sbjct: 458 IHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVV-------------PNNVTLMTLLPG 504

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  +    GKEIHGYA+++  D +I V +A++D YAK G L  ++ VFDR   R++I W
Sbjct: 505 CAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITW 564

Query: 244 TAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
             +I AY  HG   +A++LF+ M ++N  +P+ VTF A L+AC+HSG+VD+  ++F++M 
Sbjct: 565 NVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMK 624

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVEL 361
             +G+QP+ + +AC V +L RA R+ EA   ++ M P +     W + L    +  +V L
Sbjct: 625 RNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPL 684

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+   + LF++EP+   +Y+++ N+YS AG W+++  VR +M++ G++K PG SWIE  G
Sbjct: 685 GEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDG 744

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAYV 468
            +  F+A +++  +S  ++  ++ L   MR +GY      VL D  E E A +
Sbjct: 745 VIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAI 797



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 38/297 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML--NSPVLRPDGVTVVSVLQACGQ-SSD 57
           M  RD V++NS+IA       +       R+ML    P+      T+VSVL AC   + D
Sbjct: 122 MPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL---SSFTLVSVLLACSHLAED 178

Query: 58  IVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +  G E H F +++      + +  NAL+ MYA+ G +D A+ L   +   D        
Sbjct: 179 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPG----- 233

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                                 G+ TWN ++S LVQ+ R    ++++ +M A GVRP+ +
Sbjct: 234 ---------------------GGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGI 272

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           T +S     S    L  G+E+H Y +K+     N +VA+A++D YA    +  A+RVFD 
Sbjct: 273 TFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDM 332

Query: 235 FKG--RSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHS 288
             G  R L +W A++  YA  G   +A+ LF  M    G+ P   T   VL ACA S
Sbjct: 333 VPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARS 389



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 39/217 (17%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           + NAL+  YA+CG L  A AL + M  +D V                             
Sbjct: 98  VANALLTAYARCGDLTAALALFNAMPSRDAV----------------------------- 128

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIH 197
             T+N++I+ L    R    LD +R+M   G   ++ T+ S+    SH + +L+ G+E H
Sbjct: 129 --TFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAH 186

Query: 198 GYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRF-----KGRSLIIWTAIISAY 250
            +A+KN +      +   A++  YA+ G +  AQ +F         G  ++ W  ++S  
Sbjct: 187 AFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLL 246

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
              G   +A+ +  +M+  G++PD +TF + L AC+ 
Sbjct: 247 VQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQ 283



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + KR++++WN +I  Y   G  +E  ALF  M+ S   +P+ VT ++ L AC  S  +  
Sbjct: 556 LPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDR 615

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAII 115
           GME+ + +  +H      DL  C   + +  + G LD A +++  M   ++   ++S+ +
Sbjct: 616 GMELFHSMKRNHGVQPTPDLHACA--VDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFL 673

Query: 116 SGYMVHGFVE----KAMDLFQV 133
               +H  V      A  LFQ+
Sbjct: 674 GACRLHRNVPLGEIAAERLFQL 695



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 194 KEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
           + IHG A++    +     VA A++  YA+ G L  A  +F+    R  + + ++I+A  
Sbjct: 79  RSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALC 138

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
                  A+    +ML  G      T  +VL AC+H
Sbjct: 139 LFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSH 174


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/422 (35%), Positives = 239/422 (56%), Gaps = 1/422 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+I GYSQ   ++E   LF  M  + V   D VT+V V+ AC    +   
Sbjct: 218 MDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANV-TADSVTMVKVILACSYLCEDGV 276

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +  ++ + H+ +D+++ N+LI MY + G +D AR + D M +K+ VS++A+++GY  
Sbjct: 277 VDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYAT 336

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A  LF  M    + +W  +ISG  Q N+    L L +EM  + V+P+ +T+SS+
Sbjct: 337 AGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSV 396

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  SH   L  G+ +H Y  ++    ++YV  A+ID Y K G +  A  VF   K +  
Sbjct: 397 LSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDS 456

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I   A +G       LF++ML +G+QP   +F  +L AC H+GLVDK  + F +
Sbjct: 457 VSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFES 516

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P ++HY C+V +LSR+  +  A EF+ +MPV P   +W  LL    +  ++ 
Sbjct: 517 MEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLV 576

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L E++P N+GNY++++N Y+ + RWD+A R+R+ M    + K    S IE  
Sbjct: 577 LAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEVI 636

Query: 421 GG 422
           G 
Sbjct: 637 GA 638



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 182/398 (45%), Gaps = 71/398 (17%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++ +N +I G SQ     E   ++ +++ +  +  D +T + + +AC +  D++ G   H
Sbjct: 121 LLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFH 180

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V++      L+I N+LI MY   G L YA+ + D+M D+D VS++++I GY       
Sbjct: 181 VQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGY------- 233

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                                    Q NR + VLDL   M+ + V  ++VT+  +    S
Sbjct: 234 ------------------------SQCNRFKEVLDLFNLMREANVTADSVTMVKVILACS 269

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
           +         +  Y      D ++Y+  ++ID Y + G +  A+RVFDR + ++++ W A
Sbjct: 270 YLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNA 329

Query: 246 IISAYAAHGD-------------------------------ASKAVSLFNEMLNNGIQPD 274
           +++ YA  GD                                S A+ LF EM++  ++PD
Sbjct: 330 MLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPD 389

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            +T ++VLSAC+H GL+D    +   M  ++ I+  V     ++ +  +   + +A E  
Sbjct: 390 EITVSSVLSACSHLGLLDTGQTVHEYMC-RHDIKSDVYVGNALIDMYCKCGVVDKALEVF 448

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
             M  K S   W +++ G +++G V       D++FE+
Sbjct: 449 HDMKKKDSVS-WTSMILGLAVNGFV-------DNVFEL 478


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 245/455 (53%), Gaps = 34/455 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFRE-MLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
             ++V W S++   +Q G+  E    F E ML+     PD V +++ L+AC   S    G
Sbjct: 311 NHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGF--PDPVILLAALRACSFLSLKPRG 368

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           M +H F I+     D+++  AL+  Y KCG ++YA+ +   +S +D VS           
Sbjct: 369 MAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVS----------- 417

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WNA+ISG  QN   +  L   R+MQ+  ++PN VT++ I 
Sbjct: 418 --------------------WNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACIL 457

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S+ +H S +   KE+H Y +++ ++ N  V  ++I  YAK G +H ++ VF++   R+ +
Sbjct: 458 SVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEV 517

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W +I+  +  HG   +  + F +M    I+PD  TFT++LS+C+HSG VD  W  FN+M
Sbjct: 518 TWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSM 577

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              Y ++P VE Y CMV +L RA  +++A + +  MP  P  ++WG+LL      G+ +L
Sbjct: 578 MEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKL 637

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            + V +H+FE++  + G  +++ANLY  +G  +E  RVR  +K+ GL K PG SWIE   
Sbjct: 638 AEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDN 697

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FVA D S D+S  IY  +E L   M+  GYV
Sbjct: 698 SIHIFVAGDYSHDRSGDIYATIESLSLEMKRVGYV 732



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 27/291 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M +RD VSWN+MI+G+ Q G Y +   +FR M+        + V  ++ L +C     + 
Sbjct: 100 MEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLT 159

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G+E+H F+++  +  D ++ +ALI MY KCG +  A  + + + D + V  +       
Sbjct: 160 HGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRN------- 212

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                              ++ WN +I G V N      L+L  EM   G+ P++ T+  
Sbjct: 213 -------------------MAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVV 253

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +  L S   +L  GK+IHG  +    D ++ V TA+++ Y K G    + ++F R +  +
Sbjct: 254 VLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHN 313

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           L++W +++   A +G  ++A+  F+E + +   PDPV   A L AC+   L
Sbjct: 314 LVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSL 364



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 172/404 (42%), Gaps = 37/404 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++  WN MI GY           LF EML   +  PD  TVV VL  C Q  D+  G +
Sbjct: 211 RNMAVWNVMILGYVSNECLSLALELFVEMLELGI-SPDSSTVVVVLVLCSQLLDLAVGKQ 269

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  ++   +  D+ +  AL+ MY KCG                                
Sbjct: 270 IHGLILGLGLDDDVRVGTALMEMYFKCGD------------------------------- 298

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E ++ +F+  +   L  W +V+    QN      L+   E       P+ V + +    
Sbjct: 299 PETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRA 358

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  S    G  IHG+A+K  +D +++V  A++D Y K G +  AQ+VF     R L+ W
Sbjct: 359 CSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSW 418

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+IS +A +  A +A+  F +M +  I+P+ VT   +LS C H  ++    ++   +  
Sbjct: 419 NALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLR 478

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--DVEL 361
            +    ++ + + ++   ++   I  +     K+PV+     W ++L G  + G  D   
Sbjct: 479 HWFETNALVNNS-LISAYAKCGDIHSSRTVFEKLPVRNEV-TWNSILLGFGMHGRTDEMF 536

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             F       I+P++ G +  + +  S +G+ D   +    M E
Sbjct: 537 ATFEKMKEANIKPDH-GTFTSLLSSCSHSGKVDAGWKYFNSMME 579



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 36/295 (12%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+   N MI   ++ GF+E+   ++ + +       +      +++A G   D+  G ++
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++     D+++ N+L+GMY KCG+   A  + + M ++D VS++ +ISG+   G  
Sbjct: 62  HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            K++ +F+ M +                             +  G   N V   +  S  
Sbjct: 122 VKSLVMFRRMVK-----------------------------ECGGSYHNRVACLAALSSC 152

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-----GRS 239
           +    L  G EIHG+ VK   D + ++ +A+I+ Y K G +  A+ VF+R +     GR+
Sbjct: 153 ASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRN 212

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
           + +W  +I  Y ++   S A+ LF EML  GI PD  T   VL  C  S L+D A
Sbjct: 213 MAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLC--SQLLDLA 265



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD+VSWN++I+G++Q    +E    FR+M  S  ++P+ VT+  +L  C   S ++ 
Sbjct: 410 LSTRDLVSWNALISGFAQNKCADEALKAFRDM-QSKQIKPNTVTMACILSVCTHLSVMIL 468

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH +++    + +  + N+LI  YAKCG +  +R + +++  ++EV++++I+ G+ +
Sbjct: 469 CKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGM 528

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG  ++    F+ MK   +   +   + L+ +  H   +D
Sbjct: 529 HGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVD 568



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 21/182 (11%)

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           F    ++  GK+IHG+ +K  + ++I+V  +++  Y K G    A  +F+R + R  + W
Sbjct: 49  FGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSW 108

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAVLSACA-----------HSGL 290
             +IS +   GD  K++ +F  M+    G   + V   A LS+CA           H  L
Sbjct: 109 NTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFL 168

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V K  D     S ++ +   +E Y    G +  A  + E         V  +  VW  ++
Sbjct: 169 VKKGVD-----SDEFLVSALIEMYM-KCGDIKNAENVFERIR--DNELVGRNMAVWNVMI 220

Query: 351 YG 352
            G
Sbjct: 221 LG 222


>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
 gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 268/456 (58%), Gaps = 6/456 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D++SWNS++  + +   +    +L   ML   + RPD VT+++++  C     +  
Sbjct: 410 ISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDI-RPDSVTILTIIHFCASLLRVKK 468

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
             E+H + I S          + NA++  Y+KCG+++YA  +   +S+K + V+ +++IS
Sbjct: 469 VKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLIS 528

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G    A  +F  M    L+TWN ++    +N+  E  L+L  ++Q  G++P+ VT
Sbjct: 529 GYVGLGSHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVT 588

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I S+  + +  +++   ++ HGY +++ ++ ++++   ++D YAK G +  A ++F    
Sbjct: 589 IMSLIPVCTQMASVHLLRQCHGYIIRSSFE-DLHLKGTLLDAYAKCGIIGYAYKIFQSSV 647

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + L+++TA+I  YA HG + KA+  F+ MLN GI+PD V FT++LSAC+H+G + +   
Sbjct: 648 DKDLVMFTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLK 707

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IF+++   +G++P++E +AC+V +L+R   +SEA  FV+K+P++ +A +WG LL      
Sbjct: 708 IFDSIEKIHGMKPTIEQFACVVDLLARGGHVSEAYSFVTKIPIEANANIWGTLLGACKTY 767

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VELG+ V D LF+IE  + GNYI+++NLY+   RWD    VR+ M+   L K  G SW
Sbjct: 768 HEVELGRIVADKLFKIEANDIGNYIVLSNLYAADDRWDGVMEVRKMMRNKDLKKPAGCSW 827

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           IE       FV  D S  +   IY  L  L   ++E
Sbjct: 828 IEVERTNNIFVVGDCSHPQRNLIYSTLCTLDQQVKE 863



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 149/289 (51%), Gaps = 38/289 (13%)

Query: 5   DIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D V WN +++GYS+ G  + +   +FR M +S  + P  VT+ +VL  C +S ++  G  
Sbjct: 102 DPVIWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKS 161

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDY-ARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH +VI+S  +MD +  NAL+ MYAKCG +   A A+ D +  KD VS++A+I+G   +G
Sbjct: 162 VHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENG 221

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +++A  LF +M +                                 V+PN  T+++I  
Sbjct: 222 LLKEAFSLFSLMMK-------------------------------GSVKPNYATVANILP 250

Query: 183 LFSHFS-NL--KGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           + + F  N+  + G++IH Y ++      ++ V  A++  Y K G    A+ +F     R
Sbjct: 251 VCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDAR 310

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACA 286
            L+ W  II+ YA +G+  K++ +F  +++   +  D VT  ++L ACA
Sbjct: 311 DLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACA 359



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 37/285 (12%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++W S I        + E  + F   L +S   +PD   + ++L++C        G  +H
Sbjct: 1   MTWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLH 60

Query: 66  NFVI-ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           ++V+ + H+   +    AL+ MYAKCG LD    L D+    D V               
Sbjct: 61  SYVVKQGHVSCHV-TSKALLNMYAKCGMLDDCHKLFDQFGRCDPV--------------- 104

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA-VLDLVREMQASG-VRPNAVTISSIFS 182
                            WN V+SG  ++ +++A V+ + R M +SG V P++VTI+++  
Sbjct: 105 ----------------IWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLP 148

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH-GAQRVFDRFKGRSLI 241
           + +   NL GGK +HGY +K+ ++ + +   A++  YAK G +   A  VFD    + ++
Sbjct: 149 VCARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVV 208

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            W A+I+  A +G   +A SLF+ M+   ++P+  T   +L  CA
Sbjct: 209 SWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCA 253



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 38/300 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV---F 60
           +D+VSWN+MIAG ++ G  +E  +LF  M+   V +P+  TV ++L  C    + +    
Sbjct: 205 KDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSV-KPNYATVANILPVCASFDENIAHRC 263

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G ++H++V++   +  D+ +CNAL+  Y K G                            
Sbjct: 264 GRQIHSYVLQWPELSADVSVCNALLSFYLKVGR--------------------------- 296

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTIS 178
                ++A  LF  M    L +WN +I+G   N      L +   + +   +  ++VT+ 
Sbjct: 297 ----TKEAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMV 352

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           SI    +   NL+ GK++H Y +++ +   +     A++  YAK G++  A   F     
Sbjct: 353 SILPACAQLDNLQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISR 412

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + LI W +I+ A+      S+ +SL + ML   I+PD VT   ++  CA    V K  +I
Sbjct: 413 KDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEI 472



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 4/153 (2%)

Query: 141 TWNAVISGLVQNNRHEAVLDLVREM--QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           TW + I  L  ++RH   L         ++  +P+   +++I    S       GK +H 
Sbjct: 2   TWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHS 61

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG-DAS 257
           Y VK  +      + A+++ YAK G L    ++FD+F     +IW  ++S Y+  G + +
Sbjct: 62  YVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDA 121

Query: 258 KAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSG 289
             + +F  M ++G + P  VT   VL  CA SG
Sbjct: 122 DVMKVFRAMHSSGEVMPSSVTIATVLPVCARSG 154


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 257/459 (55%), Gaps = 41/459 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVV-SVLQACGQSSDIV 59
           + + +I  W ++IA  ++ GF++    +F EM      + + V V+ SVL+ACG   D +
Sbjct: 90  IPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRI 149

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           +G +VH  V++   ++D ++ +ALI MY+KCG +  AR + D M  KD V+ +A++SGY 
Sbjct: 150 YGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGYA 209

Query: 120 VHGFVEKAMDLFQVMK----RPGLSTWNA------------------------------- 144
             G   +A+ L + MK     P + TWNA                               
Sbjct: 210 QQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVEPDVV 269

Query: 145 ----VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
               V+SG VQN R+E   D  ++M   G  P + TIS++    +  + ++ GKEIHGYA
Sbjct: 270 SWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGYA 329

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +    + ++YV +A++D YAK GF+  A+ +F +   ++ +   ++I  YA HG   +A+
Sbjct: 330 LVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCEEAI 389

Query: 261 SLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
            LFN+M   G+ + D +TFTA L+AC+H G ++    +F  M  +Y I+P +EHYACMV 
Sbjct: 390 ELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYACMVD 449

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           +  RA ++ EA   +  MPVKP   VWGALL      G VEL +    HL E+EPE+ GN
Sbjct: 450 LFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAGN 509

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +++++LY+ AG W + +R++ ++K+  L K+ G SWI+
Sbjct: 510 RLLLSSLYADAGTWGKVERIKRRIKKGKLRKLQGLSWID 548



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 172/382 (45%), Gaps = 42/382 (10%)

Query: 32  MLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKC 90
           + N   LR +  +   +++    S  +  G ++H  +  + +++ +L I + LI +Y  C
Sbjct: 19  IFNHHFLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNL-IASNLITLYTTC 77

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G L  AR L D++   +                               +  W A+I+   
Sbjct: 78  GQLSIARKLFDKIPQTN-------------------------------IHRWIALIATCA 106

Query: 151 QNNRHEAVLDLVREMQA-SGVRPNAV-TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
           +   H+  L++  EMQ  +  + N+V  I S+     H  +   G+++H   +K  ++ +
Sbjct: 107 RCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEID 166

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
            +V++A+I  Y+K G +  A++VFD    + L+   A++S YA  G  ++A+SL   M  
Sbjct: 167 AFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKL 226

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
            G+ P+ VT+ A++S  A     +   +IF  M+ +  ++P V  +  ++    +  R  
Sbjct: 227 MGVNPNVVTWNALISGFAQKCDREMVSEIFRLMN-EDRVEPDVVSWTSVLSGFVQNFRNE 285

Query: 329 EATEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--IM 383
           EA +   KM +    P++    ALL   +    V  GK +  +   I  E+   Y+   +
Sbjct: 286 EAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGYALVIGVED-DLYVRSAL 344

Query: 384 ANLYSQAGRWDEADRVREQMKE 405
            ++Y++ G   EA  +  +M E
Sbjct: 345 VDMYAKCGFISEARTLFYKMPE 366


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 257/474 (54%), Gaps = 39/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSWN++IA + Q    EE  ALF  ML S  + PD  T  SV++AC     + +
Sbjct: 433 MEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRS-TMEPDDYTFGSVVKACAGKKALNY 491

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GMEVH  VI+S + +D ++ +A+I MY KCG L  A  + + + ++  VS          
Sbjct: 492 GMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVS---------- 541

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISG     + E  L     M   GV P+  T +++
Sbjct: 542 ---------------------WNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATV 580

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + ++ + ++ GK+IHG  +K +   ++Y+A+ I+D Y+K G +  ++ +F++   R  
Sbjct: 581 LDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDY 640

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I AYA HG    A+ LF EM    ++P+   F +VL ACAH G VDK    F  
Sbjct: 641 VTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFRE 700

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY+CMV +L R+ +++EA E +  MP +    +W  LL    + G+VE
Sbjct: 701 MRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVE 760

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   + L +++P+++  Y++++N+Y+ AG W E  ++R  MK   L K PG SWI+  
Sbjct: 761 VAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVR 820

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLD-EVEEESAY 467
             + +F+  D +  +SE+IY     L+  M+ +GYV      LLD EV+E+ +Y
Sbjct: 821 DEVHAFLVGDKAHPRSEEIYQQTHLLVDEMKWDGYVPEIDGFLLDEEVDEQDSY 874



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 156/350 (44%), Gaps = 34/350 (9%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S N++I GY++     E   +FR  L    L  D +++   L AC      + G+++H  
Sbjct: 339 SHNALIVGYARQDQVLEALEIFRS-LQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
            ++  +  ++ + N ++ MYAKCG+L  A  + D+M  KD VS                 
Sbjct: 398 AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVS----------------- 440

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
                         WNA+I+   QN   E  L L   M  S + P+  T  S+    +  
Sbjct: 441 --------------WNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGK 486

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
             L  G E+HG  +K+    + +V +AIID Y K G L  A+++ +R + R+ + W +II
Sbjct: 487 KALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSII 546

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           S +++      A+S F+ ML  G+ PD  T+  VL  CA+   V+    I   +  +  +
Sbjct: 547 SGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQIL-KLQL 605

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              V   + +V + S+   + ++     K P K     W A++   +  G
Sbjct: 606 HSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHG 654



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 135/286 (47%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNSM++ Y Q GF+ +   +F +M    + + D  T   VL+AC    D   
Sbjct: 130 MPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEI-QHDYATFAVVLKACTGIEDYGL 188

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   I+     D+    AL+ MY+ C  LD+A  +  EM +++ V           
Sbjct: 189 GLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSV----------- 237

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+AVI+G V+N+R    L L + M   G+  +  T +S 
Sbjct: 238 --------------------CWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASA 277

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S  + G ++H YA+K  +  +  V TA +D YAK   +  A++VF+ F   + 
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTR 337

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
               A+I  YA      +A+ +F  +  + +  D ++ +  L+AC+
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACS 383



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 37/337 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V W+++IAGY +   + E   L++ ML+   +     T  S  ++C   S    
Sbjct: 231 MPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEG-MGVSQATFASAFRSCAGLSAFEL 289

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H + ++++   D  +  A + MYAKC          D M D               
Sbjct: 290 GTQLHAYALKTNFGYDNIVGTATLDMYAKC----------DRMVD--------------- 324

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A  +F     P   + NA+I G  + ++    L++ R +Q S +  + +++S  
Sbjct: 325 ------ARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGA 378

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S       G ++HG AVK   D NI VA  I+D YAK G L  A  +FD  + +  
Sbjct: 379 LTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDA 438

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-- 298
           + W AII+A+  +    + ++LF  ML + ++PD  TF +V+ ACA    ++   ++   
Sbjct: 439 VSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGR 498

Query: 299 ---NAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
              + M   + +  ++    C  G+L  A +I E  E
Sbjct: 499 VIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLE 535



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 121/244 (49%)

Query: 43  VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE 102
           +T   + Q C     I  G + H  +  +     +++ N L+  Y KC +L+YA  + D+
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           M  +D +S++ +I GY   G +E A  LF  M    + +WN+++S  +QN  H   +++ 
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            +M+   ++ +  T + +    +   +   G ++H  A++  +D ++   TA++D Y+  
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
             L  A  +F     R+ + W+A+I+ Y  +   ++ + L+  ML+ G+     TF +  
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAF 278

Query: 283 SACA 286
            +CA
Sbjct: 279 RSCA 282


>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 484

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 255/458 (55%), Gaps = 10/458 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP-DGVTVVSVLQAC-GQSSDI 58
           +  RD+VSW S IA  ++ G  +   A    ML+SP   P + VT+++VL AC G SS  
Sbjct: 26  LPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSSSA 85

Query: 59  V---FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +     + +H   ++     +L +C  L   Y        A  L D M D+  V+Y+ +I
Sbjct: 86  LARPLALSLHALAVKL-FPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNTMI 144

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           +G M +G V  A ++F  M  P   +W A+I G V+N RH+  +D    M   GV P+ V
Sbjct: 145 TGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYV 204

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+ +  S  +    L  G  +H + V  R + N+ VA ++ID YA+ G +  A++VF R 
Sbjct: 205 TLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRI 264

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + R+++ W ++I  +AA+G  + AV  F  M   G +PD VTFT VL+AC+H+GL D+  
Sbjct: 265 RKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGL 324

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
             ++AM  ++GI   +EHY C+V +L RA R+ EA   V  MP++P+  V GALL G  +
Sbjct: 325 RYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGCRM 384

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            GDV+L + +  HL E +P    NY++++N+Y+  G+W  A +VR  MK  G+ K PG+S
Sbjct: 385 HGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAAVGKWGGAGKVRSLMKSRGVKKRPGQS 444

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
            +E  G +  FV  D S  ++ +++     +LGL+  E
Sbjct: 445 TVEIDGEVHEFVCGDRSHPQAREVF----EVLGLLTHE 478


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 255/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW+ MI G+ + G YE C   FRE++ +   +PD  ++  V++AC  +  ++ 
Sbjct: 61  MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGS-KPDNFSLPFVIKACRDTMGLIM 119

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+ V+++ + +D ++C+ L+ MYAKCG +D A+                       
Sbjct: 120 GRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAK----------------------- 156

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    LF  M +  L T   +I+G  +  +      L  +M+  G  P+ V + +I
Sbjct: 157 --------QLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTI 208

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    +   + +H Y    RY  ++ + TA+ID YAK G +  ++ +FDR + +++
Sbjct: 209 VNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNV 268

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+A+I AY  HG   +A+ LF+ MLN+GI P+ +TF ++L AC+H+GLVD    +F+ 
Sbjct: 269 ISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSL 328

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YG++P V+HY CMV +L RA R+ +A   +  M V+    +W A L    I   V+
Sbjct: 329 MSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVD 388

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L  ++ +N G+YI+++N+Y+ AGRW +  ++R  M +  L KIPG +WIE  
Sbjct: 389 LAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVD 448

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  F A D S  +S +IY +L+ L   +   GYV     +L +V+EE
Sbjct: 449 NIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEE 497



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 74/381 (19%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH  V  + I  DL + N L+ M AK   L  A  L ++M ++D VS            
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVS------------ 68

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W+ +I G V+N  +E      RE+  +G +P+  ++  +  
Sbjct: 69  -------------------WSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIK 109

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                  L  G+ IH   +KN    + +V + ++D YAK G +  A+++FDR   + L+ 
Sbjct: 110 ACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVT 169

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW------- 295
            T +I+ YA  G  +++  LF++M  +G  PD V    +++ACA  G ++KA        
Sbjct: 170 RTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVC 229

Query: 296 --------DIFNAMSGQYGI---------------QPSVEHYACMVGVLSRARRISEATE 332
                   ++  AM   Y                 Q +V  ++ M+G      +  EA E
Sbjct: 230 ARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALE 289

Query: 333 FVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------NYIIM 383
               M    + P+   + +LLY  S +G V+ G      LF +   + G      +Y  M
Sbjct: 290 LFHMMLNSGIIPNRITFISLLYACSHAGLVDDGL----QLFSLMSVSYGVRPDVKHYTCM 345

Query: 384 ANLYSQAGRWDEADRVREQMK 404
            +L  +AGR D+A R+ E M+
Sbjct: 346 VDLLGRAGRLDQALRLIENME 366



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           IS++F       N+   K++H          ++ VA  ++   AK   L  A  +F++ +
Sbjct: 7   ISTLFKC----RNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-GLVDKAW 295
            R  + W+ +I  +  +GD  +    F E++  G +PD  +   V+ AC  + GL+    
Sbjct: 63  ERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI--MG 120

Query: 296 DIFNAMSGQYGIQPSVEHYAC--MVGVLSRARRISEATEFVSKMPVK 340
            + ++   + G+   ++++ C  +V + ++   I  A +   +MP K
Sbjct: 121 RLIHSTVLKNGLH--LDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK 165


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 255/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +++ D+VSW ++I+GY+Q   + E    F+EMLN  + + D +   S + AC     +  
Sbjct: 476 LTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGI-QSDNIGFSSAISACAGIQALNQ 534

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H     S    DL I NAL+ +YA+CG +  A    +++  KD +S          
Sbjct: 535 GRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS---------- 584

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +ISG  Q+   E  L +  +M  + +  +  T  S 
Sbjct: 585 ---------------------WNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSA 623

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ +N+K GK+IH   +K  +D +I V+ A+I  YAK G +  A+R F     ++ 
Sbjct: 624 VSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND 683

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ Y+ HG  ++AV+LF +M   G  P+ VTF  VLSAC+H GLV K    F +
Sbjct: 684 VSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFES 743

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS ++G+ P   HYAC+V ++SRA  +S A +F+ +MP++P A +W  LL   ++  +VE
Sbjct: 744 MSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVE 803

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EPE++  Y++++N+Y+ +G+WD  D+ R+ M+  G+ K PGRSWIE  
Sbjct: 804 VGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVK 863

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F   D     +++IY  L  L     E GY      LL++VE+E
Sbjct: 864 NSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQE 912



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 169/360 (46%), Gaps = 34/360 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VS+NS+I+G +Q GF +    LF +M     L+PD VTV S+L AC  +  +  
Sbjct: 274 MQSKDEVSFNSLISGLAQQGFSDGALELFTKM-KRDYLKPDCVTVASLLSACASNGALCK 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H++VI++ I  D+ +  AL+ +Y  C                              
Sbjct: 333 GEQLHSYVIKAGISSDMIVEGALLDLYVNCSD---------------------------- 364

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              ++ A ++F   +   +  WN ++    + +       + R+MQ  G+ PN  T  SI
Sbjct: 365 ---IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSI 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L  G++IH   +K  +  N+YV + +ID YAK G L  A  +        +
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+IS YA H   ++A+  F EMLN GIQ D + F++ +SACA    +++   I +A
Sbjct: 482 VSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI-HA 540

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            S   G    +     +V + +R  RI EA     K+  K S   W  L+ G + SG  E
Sbjct: 541 QSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS-WNGLISGFAQSGYCE 599



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 165/352 (46%), Gaps = 34/352 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +D VSW +MI+G+SQ G+ EE   LF EM  + +  P      SVL  C +      
Sbjct: 173 LCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIF-PTPYVFSSVLSGCTKIKLFDV 231

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V +    ++ ++CNAL+ +Y++  +   A  +  +M  KDEVS++++ISG   
Sbjct: 232 GEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQ 291

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF + A++LF  MKR  L                               +P+ VT++S+
Sbjct: 292 QGFSDGALELFTKMKRDYL-------------------------------KPDCVTVASL 320

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+++H Y +K     ++ V  A++D Y     +  A  +F   +  ++
Sbjct: 321 LSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENV 380

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ A+    + S++  +F +M   G+ P+  T+ ++L  C   G +D    I   
Sbjct: 381 VLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ 440

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +  + G Q +V   + ++ + ++  ++  A   + +   +     W AL+ G
Sbjct: 441 VI-KTGFQFNVYVCSVLIDMYAKHGKLDTA-HVILRTLTEDDVVSWTALISG 490



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 33/294 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC-GQSSDIV 59
           M  R + SW+ +I+G+ +         LF  M+   V  P  ++  SVL+AC G    I 
Sbjct: 71  MPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENV-SPTEISFASVLRACSGHRIGIR 129

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           +  ++H  +I   +     I N LIG+YAK G +  AR + D +  KD VS+ A+ISG+ 
Sbjct: 130 YAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFS 189

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G+ E+A+ LF                                EM  +G+ P     SS
Sbjct: 190 QNGYEEEAIHLFC-------------------------------EMHTAGIFPTPYVFSS 218

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S  +       G+++H    K       YV  A++  Y++      A++VF + + + 
Sbjct: 219 VLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKD 278

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            + + ++IS  A  G +  A+ LF +M  + ++PD VT  ++LSACA +G + K
Sbjct: 279 EVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCK 332



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 155/353 (43%), Gaps = 34/353 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V WN M+  + +     E   +FR+M    ++ P+  T  S+L+ C     +  G ++
Sbjct: 379 NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI-PNQFTYPSILRTCTSVGALDLGEQI 437

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI++  + ++++C+ LI MYAK G LD A                            
Sbjct: 438 HTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHV-------------------------- 471

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                + + +    + +W A+ISG  Q+N     L   +EM   G++ + +  SS  S  
Sbjct: 472 -----ILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISAC 526

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G++IH  +  + Y  ++ +  A++  YA+ G +  A   F++   +  I W 
Sbjct: 527 AGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWN 586

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS +A  G    A+ +F +M    ++    TF + +SA A+   + +   I +AM  +
Sbjct: 587 GLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQI-HAMIIK 645

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G    +E    ++   ++   I +A     +MP K     W A++ G S  G
Sbjct: 646 RGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVS-WNAMITGYSQHG 697



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 141/317 (44%), Gaps = 38/317 (11%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T + +L  C  S  +V   ++H  +++     +  +CN L+ +Y   G LD         
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLD--------- 62

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
                             G V+    +F+ M    + +W+ +ISG ++      VLDL  
Sbjct: 63  ------------------GVVK----VFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFS 100

Query: 164 EMQASGVRPNAVTISSIFSLFS-HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            M    V P  ++ +S+    S H   ++  ++IH   + +    +  ++  +I  YAK 
Sbjct: 101 CMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKN 160

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G +  A++VFD    +  + W A+IS ++ +G   +A+ LF EM   GI P P  F++VL
Sbjct: 161 GLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVL 220

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC--MVGVLSRARRISEATEFVSKMPVK 340
           S C    L D   +  +A+  +YG   S+E Y C  +V + SR      A +  SKM  K
Sbjct: 221 SGCTKIKLFDVG-EQLHALVFKYG--SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSK 277

Query: 341 PSAKVWGALLYGASISG 357
                + +L+ G +  G
Sbjct: 278 DEVS-FNSLISGLAQQG 293



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 1/193 (0%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M+  G+  N  T   +  L  +  +L   K++HG  +K  +     +   ++D Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L G  +VF+    RS+  W  IIS +     +++ + LF+ M+   + P  ++F +VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           C+   +  +  +  +A    +G+  S      ++G+ ++   I  A +    +  K S  
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 345 VWGALLYGASISG 357
            W A++ G S +G
Sbjct: 181 -WVAMISGFSQNG 192


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 251/454 (55%), Gaps = 33/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K+ +V+WNSMI+GY   G    C  LF+ M N  V +P   T+ S++  C +S+ ++ 
Sbjct: 268 MPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGV-KPTLTTLSSLIMVCSRSARLLE 326

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH + I + I+ D++I ++L+ +Y KCG                             
Sbjct: 327 GKFVHGYTIRNRIQSDVFINSSLMDLYFKCGK---------------------------- 358

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A ++F+++ +  + +WN +ISG V   +    L L  EM+ S V P+A+T +S+
Sbjct: 359 ---VELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSV 415

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L+ G+EIH   ++ + D N  V  A++D YAK G +  A  VF     R L
Sbjct: 416 LTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+AY +HG A  A+ LF EML + ++PD VTF A+LSAC H+GLVD+    FN 
Sbjct: 476 VSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQ 535

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDV 359
           M   YGI P VEHY+C++ +L RA R+ EA E + + P ++   ++   L     +  ++
Sbjct: 536 MVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNI 595

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +LG  +   L + +P+++  YI+++N+Y+ A +WDE   VR +MKE GL K PG SWIE 
Sbjct: 596 DLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEI 655

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           +  +  F  +D S    E ++  L  L   M +E
Sbjct: 656 NQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE 689



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 210/440 (47%), Gaps = 69/440 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I  WN ++AGY++   Y E   LF ++L+ P L+PD  T  SVL+ACG     V G  +
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  ++++ + MD+ + ++L+GMYAKC + + A  L +EM +KD   ++ +IS Y   G  
Sbjct: 129 HTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++A++ F +M+R                                G  PN+VTI++  S  
Sbjct: 189 KEALEYFGLMRR-------------------------------FGFEPNSVTITTAISSC 217

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L  G EIH   + + +  + ++++A++D Y K G L  A  VF++   ++++ W 
Sbjct: 218 ARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWN 277

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIFN 299
           ++IS Y   GD+   + LF  M N G++P   T ++++  C+ S     G     + I N
Sbjct: 278 SMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRN 337

Query: 300 AMSGQYGIQPSVE--HYAC--------MVGVLSRARRIS---------------EATEFV 334
            +     I  S+   ++ C        +  ++ +++ +S               EA    
Sbjct: 338 RIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLF 397

Query: 335 SKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA---NLYS 388
           S+M    V+P A  + ++L   S    +E G+ +  H   IE +   N ++M    ++Y+
Sbjct: 398 SEMRKSYVEPDAITFTSVLTACSQLAALEKGEEI--HNLIIEKKLDNNEVVMGALLDMYA 455

Query: 389 QAGRWDEADRVREQMKESGL 408
           + G  DEA  V + + +  L
Sbjct: 456 KCGAVDEAFSVFKCLPKRDL 475



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 201/409 (49%), Gaps = 45/409 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+  WN++I+ Y Q G ++E    F  ++      P+ VT+ + + +C +  D+  
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKEALEYFG-LMRRFGFEPNSVTITTAISSCARLLDLNR 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+H  +I S   +D +I +AL+ MY KCG L+ A  + ++M  K  V+++++ISGY +
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGL 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    ++   Q+ KR                            M   GV+P   T+SS+
Sbjct: 286 KG---DSISCIQLFKR----------------------------MYNEGVKPTLTTLSSL 314

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + S  + L  GK +HGY ++NR   ++++ ++++D Y K G +  A+ +F       +
Sbjct: 315 IMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKV 374

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +IS Y A G   +A+ LF+EM  + ++PD +TFT+VL+AC+    ++K  +I N 
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNL 434

Query: 301 MSGQYGIQPSVEHYACMVGVL----SRARRISEATEFVSKMPVKPSAKVWGALL--YGAS 354
           +     I+  +++   ++G L    ++   + EA      +P K     W +++  YG+ 
Sbjct: 435 I-----IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSH 488

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
               V L  F       ++P+    ++ + +    AG  DE      QM
Sbjct: 489 GQAYVALELFAEMLQSNMKPDRV-TFLAILSACGHAGLVDEGCYYFNQM 536



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 135/319 (42%), Gaps = 33/319 (10%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D   ++ +L+AC  S  +  G  +H  V+   ++ D+++C  LI +Y  C   D+A+ + 
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D M +  E+                              S WN +++G  +N  +   L+
Sbjct: 62  DNMENPCEI------------------------------SLWNGLMAGYTKNYMYVEALE 91

Query: 161 LVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           L  + +    ++P++ T  S+            GK IH   VK     +I V ++++  Y
Sbjct: 92  LFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMY 151

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           AK      A  +F+    + +  W  +IS Y   G+  +A+  F  M   G +P+ VT T
Sbjct: 152 AKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTIT 211

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
             +S+CA    +++  +I   +     +  S    A +V +  +   +  A E   +MP 
Sbjct: 212 TAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA-LVDMYGKCGHLEMAIEVFEQMP- 269

Query: 340 KPSAKVWGALLYGASISGD 358
           K +   W +++ G  + GD
Sbjct: 270 KKTVVAWNSMISGYGLKGD 288


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 259/456 (56%), Gaps = 15/456 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R +  WN+MI GY+Q G  E+   LF  M     + P   T+  VL +C +S       
Sbjct: 335 ERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKE 394

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH +V++  +  + ++ NAL+ +YA+ G +D AR +   +  +D VS++ +I+G +V G
Sbjct: 395 AVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQG 454

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +  A  L + M++ G  T  A   G+   +    V             PN +T+ ++  
Sbjct: 455 HIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVV-------------PNNITLMTLLP 501

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  +    GKEIHGYAV++  D ++ V +A++D YAK G L  ++ VFDR   R++I 
Sbjct: 502 GCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVIT 561

Query: 243 WTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           W  +I AY  HG   +A++LF+ M+ ++  +P+ VTF A L+AC+HSG+VD+  ++F +M
Sbjct: 562 WNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSM 621

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVE 360
              +G++P+ + +AC V +L RA R+ EA   +S M P +     W + L    +  +V 
Sbjct: 622 KRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVA 681

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LFE+EP+   +Y+++ N+YS AG W+++  VR +M++ G++K PG SWIE  
Sbjct: 682 LGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELD 741

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G +  F+A +++  +S  ++  ++ L   MR++GY 
Sbjct: 742 GVIHRFMAGESAHPESTLVHAHMDALWERMRDQGYT 777



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 138/297 (46%), Gaps = 38/297 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML--NSPVLRPDGVTVVSVLQACGQ-SSD 57
           M  RD V++NS+IA       +       R+ML    P+      T+VSVL AC   + D
Sbjct: 120 MPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL---TSFTLVSVLLACSHLAED 176

Query: 58  IVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +  G E H F +++      + +  NAL+ MYA+ G +D A+ L   +   D      + 
Sbjct: 177 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATD------VP 230

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            G                    G+ TWN ++S LVQ+ R    ++++ +M A GVRP+ V
Sbjct: 231 GG--------------------GVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGV 270

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           T +S     S    L  G+E+H Y +K+     N +VA+A++D YA    +  A+ VFD 
Sbjct: 271 TFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDM 330

Query: 235 FKG--RSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHS 288
                R L +W A+I  YA  G    A+ LF  M    G+ P   T   VL +CA S
Sbjct: 331 VPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARS 387



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 39/217 (17%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           + NAL+  YA+CG L  A AL D M  +D V                             
Sbjct: 96  VSNALLTAYARCGDLTAALALFDAMPSRDAV----------------------------- 126

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIH 197
             T+N++I+ L    R    LD +R+M   G    + T+ S+    SH + +L+ G+E H
Sbjct: 127 --TFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAH 184

Query: 198 GYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDR-----FKGRSLIIWTAIISAY 250
            +A+KN +      +   A++  YA+ G +  AQ +F         G  ++ W  ++S  
Sbjct: 185 AFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLL 244

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
              G   +A+ +  +M+  G++PD VTF + L AC+ 
Sbjct: 245 VQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQ 281



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++++WN +I  Y   G  +E  ALF  M+ S   +P+ VT ++ L AC  S  +  
Sbjct: 554 LPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDR 613

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAII 115
           G+E+   +  +H      DL  C   + +  + G LD A  ++  M   ++   ++S+ +
Sbjct: 614 GLEMFRSMKRNHGVEPTPDLHACA--VDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFL 671

Query: 116 SGYMVH 121
               +H
Sbjct: 672 GACRLH 677



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 187 FSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
             +L   + IHG A+++         V+ A++  YA+ G L  A  +FD    R  + + 
Sbjct: 70  LRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFN 129

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           ++I+A         A+    +ML  G      T  +VL AC+H
Sbjct: 130 SLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSH 172


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 261/474 (55%), Gaps = 15/474 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+W+++IA + Q   YEE    F  M    V+  D V  VS L AC     +  
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV-DEVVAVSALSACANLLVVNM 394

Query: 61  GMEVHNFVI----ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G  +H+  +    ES+I +     NALI MY+KCG +  AR L DE    D +S++++IS
Sbjct: 395 GKLIHSLSLKIGTESYINLQ----NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 450

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+    V+ A  +F  M    + +W+++ISG  QN+  +  L L +EMQ SG +P+  T
Sbjct: 451 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 510

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S+ S  +  + L+ GK +H Y  +N    N+ + T +ID Y K G +  A  VF    
Sbjct: 511 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMI 570

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + +  W A+I   A +G    ++ +F+ M    + P+ +TF  VL AC H GLVD+   
Sbjct: 571 EKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH 630

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F +M   + IQP+V+HY CMV +L RA ++ EA E +++MP+ P    WGALL      
Sbjct: 631 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 690

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           GD E+G+ V   L E++P++ G +++++N+Y+  G+WD+   +R  M +  + KIPG S 
Sbjct: 691 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 750

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           IE +G +  F+A D +    + I  +L  +   ++ EGY      VLLD  EEE
Sbjct: 751 IEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEE 804



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 193/478 (40%), Gaps = 106/478 (22%)

Query: 27  ALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
            L++ ML S  L  D  T   ++QAC          +VHN V++     D+++ N LI  
Sbjct: 199 TLYKSML-SNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINC 257

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYM--------------------------- 119
           ++ C ++  A  + +E S  D VS+++I++GY+                           
Sbjct: 258 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI 317

Query: 120 ----VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
               + G V +A  LF  M    + TW+A+I+   QN  +E  +     M   GV  + V
Sbjct: 318 VLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEV 377

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
              S  S  ++   +  GK IH  ++K   +  I +  A+I  Y+K G +  A+++FD  
Sbjct: 378 VAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEA 437

Query: 236 KGRSLIIWTAIISAYAAHG--DASKAV-----------------------------SLFN 264
               LI W ++IS Y      D +KA+                             +LF 
Sbjct: 438 YLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQ 497

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           EM  +G +PD  T  +V+SACA    +++  W   +A   + G+  +V     ++ +  +
Sbjct: 498 EMQMSGFKPDETTLVSVISACARLAALEQGKW--VHAYIKRNGLTINVILGTTLIDMYMK 555

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKF----------------- 364
              +  A E    M ++     W AL+ G +++G VE  L  F                 
Sbjct: 556 CGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMG 614

Query: 365 ---VCDHL----------------FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
               C H+                 +I+P N  +Y  M +L  +AG+  EA+ +  +M
Sbjct: 615 VLGACRHMGLVDEGQHHFYSMIHDHKIQP-NVKHYGCMVDLLGRAGKLQEAEELLNRM 671



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 133 VMKRPGLSTWN----AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
           +M+ P  +TW     A     +Q N       L + M ++ +  +  T   +    S   
Sbjct: 168 LMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRR 227

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +    K++H + +K  +D ++YV   +I+ ++    +  A RVF+       + W +I++
Sbjct: 228 SEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILA 287

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            Y   G+  +A  ++++M    I    +   +++      GLV +A  +F+ M
Sbjct: 288 GYIEIGNVEEAKHIYHQMPERSI----IASNSMIVLFGMRGLVVEACKLFDEM 336


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 256/474 (54%), Gaps = 42/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R IVSW ++++ Y+Q G   E   +F  M    V +PD V +VSVL A     D+  
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDV-KPDWVALVSVLNAFTCLQDLKQ 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  ++++  +  +L  MYAKCG +  A+ L D+M                 
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM----------------- 283

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         K P L  WNA+ISG  +N      +D+  EM    VRP+ ++I+S 
Sbjct: 284 --------------KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L+  + ++ Y  ++ Y  ++++++A+ID +AK G + GA+ VFDR   R +
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I  Y  HG A +A+SL+  M   G+ P+ VTF  +L AC HSG+V + W  FN 
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNL 449

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  + I P  +HYAC++ +L RA  + +A E +  MPV+P   VWGALL        VE
Sbjct: 450 MA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG++    LF I+P NTG+Y+ ++NLY+ A  WD    VR +MKE GL K  G SW+E  
Sbjct: 509 LGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV---------LLDEVEEES 465
           G L++F   D S  + E+I   +E +   ++E G+V         L DE  EE+
Sbjct: 569 GRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 179/359 (49%), Gaps = 36/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +  I  WN++I GYS+   +++   ++  M  + V  PD  T   +L+AC   S +  
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV-SPDSFTFPHLLKACSGLSHLQM 137

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISGY 118
           G  VH  V       D+++ N LI +YAKC  L  AR + +   + ++  VS++AI+S Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G   +A+++F  M++                      +D         V+P+ V + 
Sbjct: 198 AQNGEPMEALEIFSHMRK----------------------MD---------VKPDWVALV 226

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ + F+   +LK G+ IH   VK   +    +  ++   YAK G +  A+ +FD+ K  
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSP 286

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +LI+W A+IS YA +G A +A+ +F+EM+N  ++PD ++ T+ +SACA  G +++A  ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             + G+   +  V   + ++ + ++   + E    V    +     VW A++ G  + G
Sbjct: 347 EYV-GRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHG 403



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 11/257 (4%)

Query: 109 VSYSAIISGYMVH-----GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           + +S  +   ++H     G +  A  +F  + RP +  WNA+I G  +NN  +  L +  
Sbjct: 49  LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            MQ + V P++ T   +    S  S+L+ G+ +H    +  +D +++V   +I  YAK  
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR 168

Query: 224 FLHGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            L  A+ VF+      R+++ WTAI+SAYA +G+  +A+ +F+ M    ++PD V   +V
Sbjct: 169 RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSV 228

Query: 282 LSACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           L+  A + L D K     +A   + G++   +    +  + ++  +++ A     KM   
Sbjct: 229 LN--AFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-S 285

Query: 341 PSAKVWGALLYGASISG 357
           P+  +W A++ G + +G
Sbjct: 286 PNLILWNAMISGYAKNG 302


>gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 873

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 265/450 (58%), Gaps = 6/450 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWNS++  +++ G   +   L   ML     +PD  T++S++  C        
Sbjct: 415 ISSKDLISWNSVLNAFAEFGNTTQFPRLLHLMLRER-FKPDHFTILSIINFCITVLGGCK 473

Query: 61  GMEVHNFVIESHI---KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
             EVH + + + +        I NAL+  Y+KCG +DYA  + +  S K + V+ +++IS
Sbjct: 474 VKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMIS 533

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            Y+       A+ +F  M    L+TWN +I    +NN     L L R +Q  G++P+AV+
Sbjct: 534 CYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVS 593

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I S+  + +  ++ +  KE HGY+ ++R++ ++Y+  A++D YAK G +  A ++F+   
Sbjct: 594 IMSLLPVCNELASFRLLKECHGYSFRSRFE-DVYLDGALLDAYAKCGAVDCAYKLFESSS 652

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + L+++T++IS YA HG   +A+ +F  ML +G++PD V  T++LSAC+H+GLVD+  +
Sbjct: 653 QKDLVMFTSMISGYAIHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLN 712

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IF++M     I+P++EHYAC+V +L+R  RI +A  FV  MP++P A +WG LL      
Sbjct: 713 IFHSMEEVIHIKPTMEHYACVVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTH 772

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +VELG  V + LFE + ++ GNY++M+NLY+   +WD    VR+ MKE  L K PG SW
Sbjct: 773 HEVELGLVVAEQLFETKADDIGNYVVMSNLYAADAKWDGVLEVRKLMKEKELKKPPGCSW 832

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           IE  G    F+A D+   +   IY +L  L
Sbjct: 833 IEVEGEKNFFLAGDSLHPQRNMIYNLLNTL 862



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 145/296 (48%), Gaps = 41/296 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA--LFREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           ++ RD+V+WN +++GY +   ++  KA  LF +M     ++P  +T+ S+L  C +    
Sbjct: 104 LNHRDVVTWNIILSGYCRSQIHDT-KAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKG 162

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY-ARALLDEMSDKDEVSYSAIISG 117
           V G  +H+FV++S +  D  + NALI MYAK G   Y A A  + +  KD V        
Sbjct: 163 VVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVV-------- 214

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                  TWN +IS L + N     L L   M    + PN +TI
Sbjct: 215 -----------------------TWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITI 251

Query: 178 SSIFSLFSHFSN---LKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVF 232
           + I  + + F N    + GKEIHGY +  R +   +I V  A+++ Y + G +  A+ +F
Sbjct: 252 ACILPVCASFGNNVSCRFGKEIHGY-IHRRTELIEDISVCNALMNLYLRVGQMEEAEILF 310

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
              K R L+ W  +IS Y+ +    +AV  F ++L  G  PD VT  +VL ACA+S
Sbjct: 311 SHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYS 366



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 37/287 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC---GQSSDIVF 60
           +D+V+WN++I+  ++     +   LF  ML  P+  P+ +T+  +L  C   G +    F
Sbjct: 211 KDVVTWNTIISALAEKNLMFDALQLFSLMLEEPI-EPNYITIACILPVCASFGNNVSCRF 269

Query: 61  GMEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E+H ++   + +  D+ +CNAL+ +Y + G +                          
Sbjct: 270 GKEIHGYIHRRTELIEDISVCNALMNLYLRVGQM-------------------------- 303

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                E+A  LF  +K+  L +WN +ISG   N++    +D   ++   G  P++VT+ S
Sbjct: 304 -----EEAEILFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLIS 358

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +    ++  NL+ GK IHGY +++     +  V  A++  Y K   +  A   F     +
Sbjct: 359 VLPACAYSQNLRIGKMIHGYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSK 418

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            LI W ++++A+A  G+ ++   L + ML    +PD  T  ++++ C
Sbjct: 419 DLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFKPDHFTILSIINFC 465



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 35/293 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALF-REMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M   D  SW+S I        ++E  ++F  +   S   +PD     ++ ++C     I 
Sbjct: 1   MLPLDFTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAIN 60

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +  + ++        +   L+ +YA+CG+ D    L ++++ +D V          
Sbjct: 61  IGKALQGYAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVV---------- 110

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA-VLDLVREMQASG-VRPNAVTI 177
                                TWN ++SG  ++  H+   + L  +M A G V+P+A+TI
Sbjct: 111 ---------------------TWNIILSGYCRSQIHDTKAIRLFVKMHAEGEVKPSAITI 149

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG-FLHGAQRVFDRFK 236
           +SI  + S       GK IH + +K+  DR+  V  A+I  YAK+G   + A   F+   
Sbjct: 150 ASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSII 209

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            + ++ W  IISA A       A+ LF+ ML   I+P+ +T   +L  CA  G
Sbjct: 210 HKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFG 262



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 181/443 (40%), Gaps = 56/443 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+VSWN++I+GYS    + E    F ++L      PD VT++SVL AC  S ++  
Sbjct: 313 LKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGS-DPDSVTLISVLPACAYSQNLRI 371

Query: 61  GMEVHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H +++   +   D  + NAL+  Y KC  +  A      +S KD +S++++++ + 
Sbjct: 372 GKMIHGYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFA 431

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD--LVREMQASGVRPNAVTI 177
             G   +   L  +M R      +  I  ++  N    VL    V+E+    VR      
Sbjct: 432 EFGNTTQFPRLLHLMLRERFKPDHFTILSII--NFCITVLGGCKVKEVHCYSVRACLFEA 489

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVK----NRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
               ++ +   +      I  YA+K    +   RN+    ++I  Y      + A  +F 
Sbjct: 490 DYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFS 549

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-------- 285
                 L  W  +I  YA +     A+ LF  +   G++PD V+  ++L  C        
Sbjct: 550 GMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRL 609

Query: 286 --------------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
                                     A  G VD A+ +F + S     Q  +  +  M+ 
Sbjct: 610 LKECHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLFESSS-----QKDLVMFTSMIS 664

Query: 320 VLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFV---CDHLFEIE 373
             +      EA +  + M    VKP   V  ++L   S +G V+ G  +    + +  I+
Sbjct: 665 GYAIHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIK 724

Query: 374 PENTGNYIIMANLYSQAGRWDEA 396
           P    +Y  + +L ++ GR  +A
Sbjct: 725 P-TMEHYACVVDLLARGGRIKDA 746



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 140/315 (44%), Gaps = 47/315 (14%)

Query: 139 LSTWNAVISGLVQNNRHEAVLDL-VREMQ-ASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
            ++W++ I  L  N +H+ VL + V + Q +SG +P+    ++IF   +    +  GK +
Sbjct: 6   FTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKAL 65

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA-AHGD 255
            GYAVK        V   +++ YA+ G      ++F++   R ++ W  I+S Y  +   
Sbjct: 66  QGYAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQIH 125

Query: 256 ASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAH--SGLVDKAWDIF-------------N 299
            +KA+ LF +M   G ++P  +T  ++L  C+    G+V K+   F             N
Sbjct: 126 DTKAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGN 185

Query: 300 AMSGQYGI--QPSVEHYAC--------------MVGVLSRARRISEATEFVSKM---PVK 340
           A+   Y    QP  + YA               ++  L+    + +A +  S M   P++
Sbjct: 186 ALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIE 245

Query: 341 PSAKVWGALL-----YGASISGDV--ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           P+      +L     +G ++S     E+  ++      IE  +  N ++  NLY + G+ 
Sbjct: 246 PNYITIACILPVCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALM--NLYLRVGQM 303

Query: 394 DEADRVREQMKESGL 408
           +EA+ +   +K+  L
Sbjct: 304 EEAEILFSHLKQRDL 318


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 242/438 (55%), Gaps = 33/438 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+  + +WN++++GY Q   +++   LFR M +  V +PD  T+  +L +C +   + F
Sbjct: 84  ISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNV-QPDRTTLAVILSSCSKLGILDF 142

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +   +  D+++ + L+ MY+KCG +  AR++ ++M+++D V           
Sbjct: 143 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV----------- 191

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++ ++   D  ++M+ +G+ P   + +S+
Sbjct: 192 --------------------CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASM 231

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  S++  G++IH   +K+ YD+N+YV +A+ID YAK G +  A+  FD    +++
Sbjct: 232 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNI 291

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVDKA   FN+
Sbjct: 292 VAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNS 351

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P  EHY C++  L RA R  E    + KMP K    +W  LL    +  + E
Sbjct: 352 MENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAE 411

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   +HLF I+P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SWI+  
Sbjct: 412 LGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQK 471

Query: 421 GGLQSF-VAKDTSGDKSE 437
            G+++F VA D   D  E
Sbjct: 472 DGVRAFMVADDLGADGGE 489



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 144/281 (51%), Gaps = 6/281 (2%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR 136
           N LI  + + GS   A  +L  M +     +EV+YS +++  +    V  A  +F  + R
Sbjct: 27  NILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR 86

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P ++TWN ++SG  Q  +H+  ++L R MQ   V+P+  T++ I S  S    L  G+++
Sbjct: 87  PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 146

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H  +V+     +++VA+ ++D Y+K G +  A+ +F++   R ++ W +IIS    H   
Sbjct: 147 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLN 206

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            +A   F +M  NGI P   ++ +++++C+    +     I +A   + G   +V   + 
Sbjct: 207 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQI-HAQVMKDGYDQNVYVGSA 265

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ + ++   + +A  F   M +K +   W  +++G + +G
Sbjct: 266 LIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEMIHGYAQNG 305



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 37/232 (15%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +++A+ +F+ +    + +WN +I+G  Q       ++++  MQ +G  PN VT       
Sbjct: 8   MDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT------- 60

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
              +SNL                    +A+ I     K   +H A+ +FD+    S+  W
Sbjct: 61  ---YSNL--------------------LASCI-----KARDVHSARAMFDKISRPSVTTW 92

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             ++S Y         + LF  M +  +QPD  T   +LS+C+  G++D    + +A S 
Sbjct: 93  NTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSA-SV 151

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           ++ +   +   + +V + S+  +I  A    +KM  +     W +++ G +I
Sbjct: 152 RFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLTI 202



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y K   +  A +VF+     +++ W  +I+ +   G  +KAV + + M   G +P+ VT+
Sbjct: 2   YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTY 61

Query: 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
           + +L++C  +  V  A  +F+ +S     +PSV  +  ++    +  +  +  E   +M 
Sbjct: 62  SNLLASCIKARDVHSARAMFDKIS-----RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQ 116

Query: 339 ---VKPSAKVWGALLYGASISGDVELGKFV 365
              V+P       +L   S  G ++ G+ V
Sbjct: 117 HQNVQPDRTTLAVILSSCSKLGILDFGRQV 146


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 254/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K+D++S N+MI+G++  G  E+   LF+E+L+S   R    T+V ++           
Sbjct: 92  IRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGE-RVSSSTIVGLIPVYSPFGHSYL 150

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H F ++  I     +  AL  +Y +   + +AR L DE ++K              
Sbjct: 151 CNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKT------------- 197

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L++WNA+ISG  QN   +A + L + MQ + V PN VT++SI
Sbjct: 198 ------------------LASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+ +H     NR++ N+YV+TA+ID YAK G +  A+ +FD    ++ 
Sbjct: 240 LSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS Y  HG   +A+ LF +ML++ ++P  +TF +VL AC+H+GLV +   IF+ 
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHT 359

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +G +P  EHYACMV +L RA ++ +A EF+  MPV+P   VWGALL    I  D  
Sbjct: 360 MVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTN 419

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L     + LFE++PEN G Y++M+N+YS   ++ +A  VR+  K+  LAK PG + IE  
Sbjct: 420 LAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIG 479

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
                F + D S  +S+ IY  L++L G M E G+      +L ++EEE
Sbjct: 480 QVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEE 528



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 162/349 (46%), Gaps = 39/349 (11%)

Query: 12  MIAGYSQGGFYEECKALFREML--NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           MI+G+ +   +E+   +F +M+  N P  R D  TV++VL A  +  ++  GM++    I
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGP--RFDLTTVIAVLPAVAELQELKLGMQILCLAI 58

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +      + +   LI +++KCG ++ AR L  E+  KD                      
Sbjct: 59  KCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKD---------------------- 96

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
                    L + NA+ISG   N   E  + L +E+ +SG R ++ TI  +  ++S F +
Sbjct: 97  ---------LISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGH 147

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
                 IHG+ VK     +  V+TA+   Y +   +  A+++FD    ++L  W A+IS 
Sbjct: 148 SYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISG 207

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQ 308
              +G    A+SLF  M  N + P+PVT T++LSACA  G +    W   +++      +
Sbjct: 208 CTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEW--VHSLIKSNRFE 265

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +V     ++ + ++   I+ A E    MP K     W A++ G  + G
Sbjct: 266 SNVYVSTALIDMYAKCGSITVARELFDLMPEKNEV-TWNAMISGYGLHG 313


>gi|414875841|tpg|DAA52972.1| TPA: hypothetical protein ZEAMMB73_038558 [Zea mays]
          Length = 641

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/496 (32%), Positives = 266/496 (53%), Gaps = 46/496 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA---CGQSSDIV 59
           +R  +SWN++I+ YS G   +     F  M+ +   RPD VT  ++L A   CG+  + +
Sbjct: 133 RRSTLSWNTLISAYSAGCDPDAAWVAFARMVAAGA-RPDAVTWTALLSAHARCGRHPEAL 191

Query: 60  F----------------------------------GMEVHNF-VIESHIKMDLWICNALI 84
                                              G  +H +  ++  +   L++ N+L+
Sbjct: 192 RLLGAMHRSGCEGNAEAVAVALSACPYAGGPALGRGRSIHAYGFVKGVVHGYLFVTNSLV 251

Query: 85  GMYAKCGSLDYA-RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR------P 137
            MY K G ++ A +   D  + K+ V+++A+I+ Y   G   KA+ +   M++      P
Sbjct: 252 CMYGKLGEMEEAEKVFWDAGAKKNAVTWNALITSYAAAGLCGKALGVLAQMEQCGGMVAP 311

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            + +W+AVI G   +   E  L L R+MQ   + PNAVT++++ S  +    L+ G+E+H
Sbjct: 312 NVVSWSAVIGGFASSGDMEQALQLCRQMQQQWLLPNAVTLATVLSACTQLLALRLGQEVH 371

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
           G+ +K   DR+  V   +++TY K G +  A++VFD  K R LI W ++I +Y AHG   
Sbjct: 372 GHTIKAALDRHSLVQNGLVNTYGKCGKVATARKVFDGMKSRDLISWNSMIGSYGAHGMCD 431

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           +A+++F ++    I+PD VTF AVLSAC+H+G V +   +F+ M  ++ I P++EHY CM
Sbjct: 432 EALAMFQDLTRALIEPDGVTFVAVLSACSHTGRVAEGRRLFDQMVREHKISPTMEHYTCM 491

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           V +L RA  +  A E +  MP+KP   VWGALL    I GD  L +     + + E   T
Sbjct: 492 VDLLGRAGLLRGACELIDTMPMKPDLCVWGALLNSCRIHGDAALAEAAMAKVLQAETATT 551

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE 437
           GN  ++ NLY+  G WD++ RVR  MKE+GL K PG+SWIE    + +F A      ++E
Sbjct: 552 GNRTLITNLYAACGMWDDSKRVRMTMKEAGLRKNPGQSWIEVRNKVFAFTAWSAPPSEAE 611

Query: 438 QIYLILERLLGLMREE 453
           +++ +L+ L G M++E
Sbjct: 612 EVFRVLDDLYGEMKDE 627



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 7/126 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWNSMI  Y   G  +E  A+F++ L   ++ PDGVT V+VL AC  +  +  
Sbjct: 409 MKSRDLISWNSMIGSYGAHGMCDEALAMFQD-LTRALIEPDGVTFVAVLSACSHTGRVAE 467

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G  + + ++  H     M+ + C  ++ +  + G L  A  L+D M  K ++  + A+++
Sbjct: 468 GRRLFDQMVREHKISPTMEHYTC--MVDLLGRAGLLRGACELIDTMPMKPDLCVWGALLN 525

Query: 117 GYMVHG 122
              +HG
Sbjct: 526 SCRIHG 531



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 142/349 (40%), Gaps = 80/349 (22%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLN-SPVLRPDGVTVVSVLQACG--QSSDIVFGME 63
           V WN ++  +  G       AL+R M   SP L P+  T+   L+A    + + +V G  
Sbjct: 37  VPWNKLLRDHIAGSRPGLALALYRLMRALSPAL-PNSYTLPLALRAAPSWRLAAVVHGHA 95

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H   +  H   D  +   ++  YA+ G    AR + D +                    
Sbjct: 96  LH---LGLHTHPD--VAGQVLAAYARLGRAAEARCVFDALP------------------- 131

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                     ++R  LS WN +IS        +A       M A+G RP+AVT +++ S 
Sbjct: 132 ----------LRRSTLS-WNTLISAYSAGCDPDAAWVAFARMVAAGARPDAVTWTALLSA 180

Query: 184 FS---------------HFSNLKG----------------------GKEIHGYA-VKNRY 205
            +               H S  +G                      G+ IH Y  VK   
Sbjct: 181 HARCGRHPEALRLLGAMHRSGCEGNAEAVAVALSACPYAGGPALGRGRSIHAYGFVKGVV 240

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVF-DRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
              ++V  +++  Y K G +  A++VF D    ++ + W A+I++YAA G   KA+ +  
Sbjct: 241 HGYLFVTNSLVCMYGKLGEMEEAEKVFWDAGAKKNAVTWNALITSYAAAGLCGKALGVLA 300

Query: 265 EMLNNG--IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
           +M   G  + P+ V+++AV+   A SG +++A  +   M  Q+ +  +V
Sbjct: 301 QMEQCGGMVAPNVVSWSAVIGGFASSGDMEQALQLCRQMQQQWLLPNAV 349


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 259/455 (56%), Gaps = 39/455 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM---LNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++VS+N+MI GYS+     E   LFREM   L+ P L    +T VS+L        +   
Sbjct: 421 NVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTL----LTFVSLLGLSSSLFLLELS 476

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H  +I+  + +D +  +ALI +Y+KC  +  AR + +E+ D+D V            
Sbjct: 477 SQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIV------------ 524

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WNA+ SG  Q   +E  L L +++Q S ++PN  T +++ 
Sbjct: 525 -------------------VWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVI 565

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  S+ ++L+ G++ H   +K   D + +V  +++D YAK G +  + + F     R + 
Sbjct: 566 AAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIA 625

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W ++IS YA HGDA+KA+ +F  M+  G++P+ VTF  +LSAC+H+GL+D  +  F +M
Sbjct: 626 CWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM 685

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S ++GI+P ++HYACMV +L RA +I EA EFV KMP+KP+A VW +LL    +SG VEL
Sbjct: 686 S-KFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVEL 744

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G +  +     +P ++G+YI+++N+++  G W     VRE+M  S + K PG SWIE + 
Sbjct: 745 GTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNN 804

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  F+A+DT+   S  I L+L+ L+  ++  GYV
Sbjct: 805 EVHRFIARDTAHRDSTLISLVLDNLILQIKGFGYV 839



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 31/285 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++V+W+SM++ Y+Q G+  E   LF   + S   +P+   + SV++AC Q  ++  
Sbjct: 113 MPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQ 172

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++H FV++     D+++  +LI  YAK                               
Sbjct: 173 ALQLHGFVVKGGFVQDVYVGTSLIDFYAK------------------------------- 201

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G+V++A  +F  +K     TW A+I+G  +  R E  L L  +M+   V P+   ISS+
Sbjct: 202 RGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSV 261

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+GGK+IHGY ++  +D ++ V   IID Y K   +   +++F+R   + +
Sbjct: 262 LSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDV 321

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           + WT +I+    +     A+ LF EM+  G +PD    T+VL++C
Sbjct: 322 VSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSC 366



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 197/435 (45%), Gaps = 68/435 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW +MIAG  Q  F+ +   LF EM+     +PD     SVL +CG    +  G +
Sbjct: 319 KDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKG-WKPDAFGCTSVLNSCGSLQALQKGRQ 377

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH + I+ +I  D ++ N LI MYAKC SL  AR + D ++  + VSY            
Sbjct: 378 VHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSY------------ 425

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                              NA+I G  + ++    LDL REM+ S   P  +T  S+  L
Sbjct: 426 -------------------NAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGL 466

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L+   +IH   +K     + +  +A+ID Y+K   +  A+ VF+    R +++W
Sbjct: 467 SSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVW 526

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD 292
            A+ S Y+   +  +++ L+ ++  + ++P+  TF AV++A +           H+ ++ 
Sbjct: 527 NAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIK 586

Query: 293 KAWD----IFNAMSGQYGIQPSVEH------------YAC---MVGVLSRARRISEATEF 333
              D    + N++   Y    S+E              AC   M+   ++    ++A E 
Sbjct: 587 MGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEV 646

Query: 334 VSKM---PVKPSAKVWGALLYGASISGDVELG--KFVCDHLFEIEPENTGNYIIMANLYS 388
             +M    VKP+   +  LL   S +G ++LG   F     F IEP    +Y  M +L  
Sbjct: 647 FERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEP-GIDHYACMVSLLG 705

Query: 389 QAGRWDEADRVREQM 403
           +AG+  EA    ++M
Sbjct: 706 RAGKIYEAKEFVKKM 720



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 128/276 (46%), Gaps = 32/276 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +  V+W ++IAGY++ G  E    LF +M    V  PD   + SVL AC     +  G +
Sbjct: 218 KTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVY-PDRYVISSVLSACSMLEFLEGGKQ 276

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +V+     MD+ + N +I  Y KC  +   R L + + DKD VS             
Sbjct: 277 IHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVS------------- 323

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             W  +I+G +QN+ H   +DL  EM   G +P+A   +S+ + 
Sbjct: 324 ------------------WTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNS 365

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                 L+ G+++H YA+K   D + +V   +ID YAK   L  A++VFD     +++ +
Sbjct: 366 CGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSY 425

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            A+I  Y+      +A+ LF EM  +   P  +TF 
Sbjct: 426 NAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGV 170
           + ++  Y        A  LF  M    L TW++++S   Q+    EA+L   R M++   
Sbjct: 91  NTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSE 150

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           +PN   ++S+    +   NL    ++HG+ VK  + +++YV T++ID YAK G++  A+ 
Sbjct: 151 KPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARL 210

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +FD  K ++ + WTAII+ YA  G +  ++ LFN+M    + PD    ++VLSAC+
Sbjct: 211 IFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACS 266



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 80/170 (47%), Gaps = 4/170 (2%)

Query: 194 KEIHGY-AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           K+IH +  V   +  ++++   ++  Y+K      AQ++FD    R+L+ W++++S Y  
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 253 HGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
           HG + +A+ LF   + +   +P+     +V+ AC   G + +A  + +    + G    V
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQL-HGFVVKGGFVQDV 189

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
                ++   ++   + EA      + VK +   W A++ G +  G  E+
Sbjct: 190 YVGTSLIDFYAKRGYVDEARLIFDGLKVKTTV-TWTAIIAGYAKLGRSEV 238



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           ++RDI  WNSMI+ Y+Q G   +   +F  M+   V +P+ VT V +L AC  +  +  G
Sbjct: 620 NQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGV-KPNYVTFVGLLSACSHAGLLDLG 678

Query: 62  ME----VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD-EVSYSAIIS 116
                 +  F IE  I  D + C  ++ +  + G +  A+  + +M  K   V + +++S
Sbjct: 679 FHHFESMSKFGIEPGI--DHYAC--MVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLS 734

Query: 117 GYMVHGFVE 125
              V G VE
Sbjct: 735 ACRVSGHVE 743


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 256/462 (55%), Gaps = 32/462 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSWN+MI+ Y+Q G Y +   +F+ M    +  P+ +T+ +VL  C +  D+  
Sbjct: 188 MRDRSIVSWNAMISCYAQNGDYHKGWIIFQRM-QDEMCEPNEITLATVLSICAKLGDLEM 246

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +       ++  ++ +  A++ MY KCG++D  R + D M+ +D V           
Sbjct: 247 GLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVV----------- 295

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TW+A+I+G  QN R    L+L   M+++ ++PN VT+ S+
Sbjct: 296 --------------------TWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +++ G+ I  Y        N+YVA+A++  Y+K G +  A+++FD+   R  
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I   A +G A  A++L+N M    ++P+ +TF  +++AC H+G V+   + F +
Sbjct: 396 VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRS 455

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I P++EH+AC+V +  R+ R+ +A EF+ +M V+P+  +WG LL  + I  +VE
Sbjct: 456 MRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVE 515

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L E+EP+N+GNY+I++N+Y+ AGRW EA +VR+ MK+  + K    SW+E  
Sbjct: 516 LAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVE 575

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
             +  F+  DTS  +S+++Y  ++ L  L    GY L  E+E
Sbjct: 576 DRVHKFLVGDTSHPRSDEVYSTIDGLALLSTWVGYELDFEIE 617



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 185/368 (50%), Gaps = 5/368 (1%)

Query: 11  SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70
           S I  YS+     E    F  M  + V R    T+  + ++C     I  G +VH+ VI 
Sbjct: 66  SFITAYSRLSLNNEALRTFVSMHQNNV-RIVCFTIPPIFKSCASLLAIDVGKQVHSLVIR 124

Query: 71  SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDL 130
                 ++  NALI  YAK   L  A  + D +  KD ++Y+ +IS Y   G V  A +L
Sbjct: 125 YGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAAREL 184

Query: 131 FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
           F  M+   + +WNA+IS   QN  +     + + MQ     PN +T++++ S+ +   +L
Sbjct: 185 FDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDL 244

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
           + G  I           N+ V+TA+++ Y K G +   + VFD    R ++ W+A+I+ Y
Sbjct: 245 EMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGY 304

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
           A +G +++A+ LF  M +  I+P+ VT  +VLSACA  G V+    I + +  + G+  +
Sbjct: 305 AQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESR-GLISN 363

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
           V   + ++G+ S+   I +A +   K+P + +   W +++ G +I+G  E    + + + 
Sbjct: 364 VYVASALLGMYSKCGNIIKARQIFDKLPQRDNV-TWNSMIMGLAINGFAEDAIALYNRMK 422

Query: 371 EIE--PEN 376
           EIE  P N
Sbjct: 423 EIEVKPNN 430



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 23/295 (7%)

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           F++ A  +F  +  P      + I+   + + +   L     M  + VR    TI  IF 
Sbjct: 45  FIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFK 104

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    +  GK++H   ++  +  +++   A+I+ YAK   L  A+ +FD    +  I 
Sbjct: 105 SCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIA 164

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           +  +ISAY+  G+   A  LF++M +  I    V++ A++S  A +G   K W IF  M 
Sbjct: 165 YNCLISAYSRSGEVLAARELFDKMRDRSI----VSWNAMISCYAQNGDYHKGWIIFQRMQ 220

Query: 303 GQYGIQPSVEHYACMVGVLS---------RARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            +   +P+    A ++ + +         R +++++     S M V        A+L   
Sbjct: 221 DEM-CEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVST------AMLEMY 273

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              G V+ G+ V DH+      +   +  M   Y+Q GR +EA  + E MK + +
Sbjct: 274 VKCGAVDDGRLVFDHMAR---RDVVTWSAMIAGYAQNGRSNEALELFENMKSAQI 325


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/464 (34%), Positives = 258/464 (55%), Gaps = 4/464 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+  D VS+N MI GY++ G   E      EM+    L+PD  T++ +L  CG+  D   
Sbjct: 188 MAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLG-LKPDEFTMLGLLICCGRLGDAQL 246

Query: 61  GMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G  VH ++    +    +L + NAL+ MY KC  L  A+++ + +  KD +S++ +I+GY
Sbjct: 247 GKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGY 306

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G +E A + F+ M    L +WN++I+G  Q      V  L   M A  + P+ VTI 
Sbjct: 307 AKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTII 366

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ S  +    L  G+ IHG+ V+ +   + ++ +A ID Y K G +  A  VF     +
Sbjct: 367 NLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEK 426

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + +WT +I+ +A HG  SKA+ LF EM    + P+ VTF AVL+AC+HSG V +   IF
Sbjct: 427 DVTVWTTMITGFAFHGYGSKALQLFYEM-QEYVMPNQVTFVAVLTACSHSGFVSQGLRIF 485

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N+M  +YGI+P VEHY C+V +L R+ R SE  + +  MP+KPS  +WGA+L      G+
Sbjct: 486 NSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGN 545

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E+ +     L ++EPE  G Y++++N+Y+ +GRW  +D++RE M+  G+ K  G S + 
Sbjct: 546 IEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVV 605

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
             G +  FVA D    +  +I  IL  L   M+     LL+ ++
Sbjct: 606 VDGIIHEFVAADKRHPRWIEIQSILFCLKSEMKLGTDFLLEYLQ 649



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 144/384 (37%), Gaps = 85/384 (22%)

Query: 103 MSDKDEVSYSAIISGYMVHGFVEK--------------AMDLFQVMKRPGLSTWNAVISG 148
           +S   ++   AII+G   +G+++               A  +FQ M  P   ++N +I G
Sbjct: 143 LSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFG 202

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR- 207
             +   +   L  + EM   G++P+  T+  +        + + GK +H +  +    + 
Sbjct: 203 YAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKS 262

Query: 208 -NIYVATAIIDT-------------------------------YAKTGFLHGAQRVFDRF 235
            N+ +  A++D                                YAK G L  A   F+  
Sbjct: 263 SNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDM 322

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGL 290
             R L+ W +II+ YA  GD      LF  M+   I PD VT   ++SA A     H G 
Sbjct: 323 PCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGR 382

Query: 291 VDKAW--------DIF--NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-- 338
               W        D F  +A    Y    S++  ACMV      + ++  T  ++     
Sbjct: 383 WIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKR-ACMVFREVTEKDVTVWTTMITGFAFH 441

Query: 339 ----------------VKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGN 379
                           V P+   + A+L   S SG V  G  + + + E   IEP    +
Sbjct: 442 GYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEP-GVEH 500

Query: 380 YIIMANLYSQAGRWDEADRVREQM 403
           Y  + +L  ++GR+ E   V E M
Sbjct: 501 YGCLVDLLGRSGRFSEVKDVIEMM 524



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 145/379 (38%), Gaps = 71/379 (18%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA--MDLFQVMKR-- 136
           +A + +  KC + D+ + +L ++   + +  +  +S  ++   +     +D+  ++ R  
Sbjct: 32  HATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDMAVLLFRHH 91

Query: 137 ---PGLSTWNAVISGL-VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
              P L  +N +IS L +  N+  A  +    + +S + PN    S+   L      L  
Sbjct: 92  TPHPNLYIYNTMISALSLSLNQSFAFYN---SLLSSCIYPNR---STFLFLLQASKFLSQ 145

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
             +IH +A+        Y+   ++  Y +   +  A +VF +      + +  +I  YA 
Sbjct: 146 VMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAK 205

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG----------------------- 289
            G   +A+   +EM+  G++PD  T   +L  C   G                       
Sbjct: 206 KGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNL 265

Query: 290 -----LVDK---------AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
                L+D          A  IFN +     ++     +  M+   ++   +  A  F  
Sbjct: 266 ILNNALLDMYVKCKELRIAQSIFNVI-----VRKDTISWNTMIAGYAKVGNLEIAHNFFE 320

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE-IEPENT-GNYIIMANLYSQA--- 390
            MP +     W +++ G +  GD      +   LFE +  EN   +++ + NL S A   
Sbjct: 321 DMPCRDLVS-WNSIIAGYAQKGDC----LMVQRLFENMVAENIWPDFVTIINLVSAAAEI 375

Query: 391 -----GRWDEADRVREQMK 404
                GRW     VR QMK
Sbjct: 376 GALHHGRWIHGWVVRMQMK 394


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 266/476 (55%), Gaps = 42/476 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
           + KR+IVSW SMI GY   G   +  +LF+++L     +   +  D + +VSV+ AC + 
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS--LDYARALLDEMSDKDEVSYSA 113
                   +H+FVI+      + + N L+  YAK G   +  AR + D++ DKD VSY++
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           I+S Y   G   +A ++F+ + +  + T+NA+                            
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI---------------------------- 288

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T+S++    SH   L+ GK IH   ++   + ++ V T+IID Y K G +  A++ FD
Sbjct: 289 --TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R K +++  WTA+I+ Y  HG A+KA+ LF  M+++G++P+ +TF +VL+AC+H+GL  +
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            W  FNAM G++G++P +EHY CMV +L RA  + +A + + +M +KP + +W +LL   
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAAC 466

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I  +VEL +     LFE++  N G Y++++++Y+ AGRW + +RVR  MK  GL K PG
Sbjct: 467 RIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPG 526

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            S +E +G +  F+  D    + E+IY  L  L   + E GYV     +  +V+EE
Sbjct: 527 FSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 171/360 (47%), Gaps = 31/360 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K D+ SWNS+IA  ++ G   E    F  M     L P   +    ++AC    DI  
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSM-RKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H        + D+++ +ALI MY+ CG L+ AR + DE+  ++ VS++++I GY +
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G    A+ LF+ +              LV  N  +  + L           +++ + S+
Sbjct: 155 NGNALDAVSLFKDL--------------LVDENDDDDAMFL-----------DSMGLVSV 189

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK--TGFLHGAQRVFDRFKGR 238
            S  S        + IH + +K  +DR + V   ++D YAK   G +  A+++FD+   +
Sbjct: 190 ISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK 249

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDI 297
             + + +I+S YA  G +++A  +F  ++ N +   + +T + VL A +HSG +     I
Sbjct: 250 DRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCI 309

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            + +  + G++  V     ++ +  +  R+  A +   +M  K + + W A++ G  + G
Sbjct: 310 HDQVI-RMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-NVRSWTAMIAGYGMHG 367



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 143/325 (44%), Gaps = 60/325 (18%)

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPN----AVTISSIFSLFSHFSNLKGGKEI 196
           +WN+VI+ L ++      L     M+   + P        I +  SLF  FS    GK+ 
Sbjct: 43  SWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS----GKQT 98

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H  A    Y  +I+V++A+I  Y+  G L  A++VFD    R+++ WT++I  Y  +G+A
Sbjct: 99  HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNA 158

Query: 257 SKAVSLFNEML------NNGIQPDPVTFTAVLSACA-----------HSGLVDKAWD--- 296
             AVSLF ++L      ++ +  D +   +V+SAC+           HS ++ + +D   
Sbjct: 159 LDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGV 218

Query: 297 -IFNAMSGQYG-----------------IQPSVEHYACMVGVLSRARRISEATE----FV 334
            + N +   Y                  +      Y  ++ V +++   +EA E     V
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAG 391
               V  +A     +L   S SG + +GK + D +  +  E+    G  II  ++Y + G
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII--DMYCKCG 336

Query: 392 RWDEADRVREQMKESGLAKIPGRSW 416
           R + A +  ++MK   +     RSW
Sbjct: 337 RVETARKAFDRMKNKNV-----RSW 356


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 250/456 (54%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW  +IAGY+Q     E   L  +ML +   RP+G T  S+L+A G       
Sbjct: 18  MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRAR-FRPNGFTFTSLLKATGACGGCSI 76

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++ +   D+++ +AL+ MYA+C  +D A  + D +  K+EVS          
Sbjct: 77  GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS---------- 126

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E  L    EMQ +G      T SS+
Sbjct: 127 ---------------------WNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSM 165

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS F+    L+ G+ +H + +K+      +V   ++  YAK+G +  A++VFDR   R L
Sbjct: 166 FSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDL 225

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++A A +G   +AV+ F E+   GIQ + +TF +VL+AC+H GLV +    F+ 
Sbjct: 226 VTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDM 285

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y +QP ++HY   V +L RA  + EA  FV KMP++P+A VWGALL    +  + +
Sbjct: 286 MK-DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAK 344

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G++  DH+FE++P++TG  +++ N+Y+  G+W++A RVR+ MK +G+ K P  SW++  
Sbjct: 345 MGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIE 404

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  KS  IY + E +   +++ GYV
Sbjct: 405 NSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYV 440



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 38/289 (13%)

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MY KCG++  AR + D+M  +D VS++ +I+GY                           
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGY--------------------------- 33

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
                QN      + L+ +M  +  RPN  T +S+            G+++H  AVK  +
Sbjct: 34  ----AQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNW 89

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D ++YV +A++D YA+   +  A  VFDR   ++ + W A+I+ +A   D    +  F E
Sbjct: 90  DEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           M  NG      T++++ SA A  G +++  W   +A   + G + +      M+G+ +++
Sbjct: 150 MQRNGFGATHFTYSSMFSAFARIGALEQGRW--VHAHLIKSGQKLTAFVGNTMLGMYAKS 207

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373
             + +A +   +M  K     W  +L   +  G   LGK    H  EI 
Sbjct: 208 GSMVDARKVFDRMD-KRDLVTWNTMLTALAQYG---LGKEAVAHFEEIR 252


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/440 (35%), Positives = 242/440 (55%), Gaps = 1/440 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI+S+ S+++ + +   + +  ++F   + S   RPDG   V  L A G   D   G  V
Sbjct: 83  DIISFTSLMSLHLKLDHHWKAISVFSHAIASG-HRPDGFAAVGALSASGGLGDQRIGSVV 141

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +    +  +L +CNAL+ MY +CG  + AR + D M  KDEV++ +++ GYM    V
Sbjct: 142 HGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGV 201

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A+  F  M      +W A+I+G VQ+ +    L+L  +M   G RPN +TI  + S  
Sbjct: 202 DSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSAC 261

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G+ IHGY  K+    NI V  A++D YAK+G +  A  VF+  + +    WT
Sbjct: 262 ADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWT 321

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS++   G+  KAV LF +ML +GI P+ VTF +VLSAC+H+GL+ +  ++F+ M   
Sbjct: 322 TMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREV 381

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EHY CMV +L R   + EA   +  M V+P   +W +LL      G+  L + 
Sbjct: 382 YHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEI 441

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               + + EP + G Y+++ N+Y+ + RW EA  +R+QM    + K PG SWIE  G + 
Sbjct: 442 AGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVH 501

Query: 425 SFVAKDTSGDKSEQIYLILE 444
            F+ +D S D   +IY+ LE
Sbjct: 502 EFLVEDKSHDARREIYVTLE 521



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 65/288 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----------------NSPVL----- 38
           M  +D V+W SM+ GY +    +   + F +M                    P+      
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                   RP+ +T+V VL AC     +  G  +H +  +S+   ++ + NAL+ MYAK 
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+  A ++ +E+  KD  +++ +IS + V G   KA++LF          W        
Sbjct: 300 GSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF----------W-------- 341

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRN 208
                    D++R    SG+ PN+VT  S+ S  SH   ++ G+E+    ++  Y  D  
Sbjct: 342 ---------DMLR----SGILPNSVTFVSVLSACSHAGLIQEGRELFD-KMREVYHIDPR 387

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGD 255
           +     ++D   + G L  A+ + D       ++IW +++SA  AHG+
Sbjct: 388 LEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGN 435



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 50/372 (13%)

Query: 75  MDLWICNALIGMYAKCGSLD--YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQ 132
           M+  +C+ L+        L   +A+AL   +    +     I   Y   G    A  LF 
Sbjct: 18  MNRSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFD 77

Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
            +  P + ++ +++S  ++ + H   + +     ASG RP+        S      + + 
Sbjct: 78  EIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRI 137

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR------------------ 234
           G  +HG   +   D  + V  A++D Y + G    A+ VFDR                  
Sbjct: 138 GSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMK 197

Query: 235 -------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
                           +S + WTA+I+ +       +A+ LF +ML  G +P+ +T   V
Sbjct: 198 CVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGV 257

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL----SRARRISEATEFVSKM 337
           LSACA  G    A D+  A+ G YG + +      +   L    +++  I+ A     ++
Sbjct: 258 LSACADIG----ALDLGRAIHG-YGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEV 312

Query: 338 PVKPSAKVWGALLYGASISGD----VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
            +K  A  W  ++   ++ G+    VEL     D L      N+  ++ + +  S AG  
Sbjct: 313 QMK-DAFTWTTMISSFTVQGNGRKAVEL---FWDMLRSGILPNSVTFVSVLSACSHAGLI 368

Query: 394 DEADRVREQMKE 405
            E   + ++M+E
Sbjct: 369 QEGRELFDKMRE 380



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 18/173 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D  +W +MI+ ++  G   +   LF +ML S +L P+ VT VSVL AC  +  I  G E
Sbjct: 315 KDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL-PNSVTFVSVLSACSHAGLIQEGRE 373

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVH 121
           + + + E  HI   L     ++ +  + G L+ A AL+D M  + D V + +++S  + H
Sbjct: 374 LFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAH 433

Query: 122 G---FVEKAMDLFQVMKR-PG-----LSTWNAVISGLVQNNRHEAVLDLVREM 165
           G     E A    +++KR PG     +  WN        +NR +  LD+ ++M
Sbjct: 434 GNDRLAEIAGK--EIIKREPGDDGVYVLLWNMY----ALSNRWKEALDMRKQM 480


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/427 (34%), Positives = 248/427 (58%), Gaps = 9/427 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+MIAGY Q G  E+   LF+E     + + D +T  +++    Q  D+  
Sbjct: 224 MPQRDVVSWNAMIAGYVQNGLIEDALKLFQE-----IPKRDVITWNTMMAGYAQCGDVEN 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +E+     E   + +L   N +I  Y + GS+  A  L   M +++ +S++A+ISG+  
Sbjct: 279 AVEL----FEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQ 334

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G VE+A+ LF+ M    + +WNA+I+G  QN + E  L L  +MQ   ++PN  T + +
Sbjct: 335 NGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIV 394

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L+ G E H   +++ +  ++ V   ++  YAK G +  A++VFDR + +  
Sbjct: 395 LPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDS 454

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
              +A+I  YA +G + +++ LF +M   G++PD VTF  VLSAC H+GLVD+    F+ 
Sbjct: 455 ASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDI 514

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y I P++EHY CM+ +L RA    EA + ++KMP+KP A +WG+LL       +++
Sbjct: 515 MTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNID 574

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V  HL  + P+N   Y++++N+Y+ AGRWD+   VR +MK+  + K  G SWI   
Sbjct: 575 LGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIK 634

Query: 421 GGLQSFV 427
             + +F+
Sbjct: 635 KQVHAFL 641



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 194/357 (54%), Gaps = 14/357 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSW +MIA Y++    +E    F EM +  + +P+  T  S+L AC   +D+  
Sbjct: 126 MPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGI-QPNHFTFASILPAC---TDLEV 181

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E H+ +++   + ++++ N L+ MYAK G +++AR L D+M  +D VS++A+I+GY+ 
Sbjct: 182 LGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQ 241

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +E A+ LFQ + +  + TWN +++G  Q    E  ++L  +M       N V+ +++
Sbjct: 242 NGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ----NLVSWNTM 297

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +    ++K   ++     +   +RN+    A+I  +A+ G +  A ++F      ++
Sbjct: 298 IAGYVQNGSVKEAFKL----FQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNV 353

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ Y+ +G A  A+ LF +M    ++P+  TF  VL ACA   ++++  +    
Sbjct: 354 VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEV 413

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +  + G Q  V     +VG+ ++   I +A +   +M  + SA +  A++ G +I+G
Sbjct: 414 VI-RSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASL-SAMIVGYAING 468



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 51/397 (12%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           + ++    + G   E   + ++M+ + +  P   T  S+LQ C  +  +     +H  +I
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIW-PHSSTYDSLLQGCLNAKSLPDAKLLHAHMI 91

Query: 70  ESHIK-MDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++  +  D+ + N L+ +Y K GSL  AR + DEM  K+ VS++A+I+ Y  H   ++A+
Sbjct: 92  QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
             F                                EMQ  G++PN  T +SI    +   
Sbjct: 152 GFF-------------------------------YEMQDVGIQPNHFTFASILPACTDLE 180

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L    E H   VK  ++ N++V   ++D YAK G +  A+ +FD+   R ++ W A+I+
Sbjct: 181 VL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIA 237

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            Y  +G    A+ LF E+     + D +T+  +++  A  G V+ A ++F  M  Q    
Sbjct: 238 GYVQNGLIEDALKLFQEI----PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ---- 289

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
            ++  +  M+    +   + EA +    MP + +   W A++ G + +G VE        
Sbjct: 290 -NLVSWNTMIAGYVQNGSVKEAFKLFQIMPER-NVISWNAVISGFAQNGQVEEAL----K 343

Query: 369 LFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMK 404
           LF+  PE N  ++  M   YSQ G+ + A ++  QM+
Sbjct: 344 LFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQ 380



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 44/297 (14%)

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           + ++  L +  R    L ++++M  +G+ P++ T  S+     +  +L   K +H + ++
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 203 NRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            +++ ++I +   ++  Y K G L  A+RVFD    ++++ WTA+I+AYA H    +A+ 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 262 LFNEMLNNGIQPDPVTFTAVLSAC--------------------------------AHSG 289
            F EM + GIQP+  TF ++L AC                                A  G
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRG 212

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            ++ A ++F+ M      Q  V  +  M+    +   I +A +   ++P K     W  +
Sbjct: 213 CIEFARELFDKMP-----QRDVVSWNAMIAGYVQNGLIEDALKLFQEIP-KRDVITWNTM 266

Query: 350 LYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           + G +  GDVE        LFE  PE N  ++  M   Y Q G   EA ++ + M E
Sbjct: 267 MAGYAQCGDVENAV----ELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPE 319


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 168/468 (35%), Positives = 252/468 (53%), Gaps = 42/468 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D+VSWNS+IA Y Q          F +M LN    +PD +T+VS+     QS D      
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG--FQPDLLTLVSLASIVAQSRDCKNSRS 438

Query: 64  VHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH F++     M D+ I NA++ MYAK G LD                            
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD---------------------------- 470

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISSIF 181
               A  +F+++    + +WN +I+G  QN      +++ + M+    + PN  T  SI 
Sbjct: 471 ---SAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
             ++H   L+ G +IHG  +K     +++VAT +ID Y K G L  A  +F +    S +
Sbjct: 528 PAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W AIIS +  HG A K + LF EML+ G++PD VTF ++LSAC+HSG V++    F  M
Sbjct: 588 TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM 647

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI+PS++HY CMV +L RA  +  A +F+  MP++P A +WGALL    I G++EL
Sbjct: 648 Q-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIEL 706

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           GKF  D LFE++ +N G Y++++N+Y+  G+W+  D+VR   +E GL K PG S IE + 
Sbjct: 707 GKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNR 766

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F   + S  K ++IY  L  L   M+  GY+     +L +VEE+
Sbjct: 767 KVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED 814



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 200/412 (48%), Gaps = 39/412 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN+MI+G  Q G   +   +  EM    + + + VTVVS+L  C Q  DI  
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-KMNFVTVVSILPVCPQLGDIST 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            M +H +VI+  ++ DL++ NALI MYAK G+L+ AR    +M   D VS+++II+ Y  
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE- 393

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN+          +MQ +G +P+ +T+ S+
Sbjct: 394 ------------------------------QNDDPVTAHGFFVKMQLNGFQPDLLTLVSL 423

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S+ +   + K  + +HG+ ++  +   ++ +  A++D YAK G L  A +VF+    + 
Sbjct: 424 ASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKD 483

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +I W  +I+ YA +G AS+A+ ++  M     I P+  T+ ++L A AH G + +   I 
Sbjct: 484 VISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIH 543

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             +  +  +   V    C++ V  +  R+ +A     ++P + S+  W A++    I G 
Sbjct: 544 GRVI-KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGH 601

Query: 359 VELG-KFVCDHLFE-IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            E   K   + L E ++P++   ++ + +  S +G  +E       M+E G+
Sbjct: 602 AEKTLKLFGEMLDEGVKPDHV-TFVSLLSACSHSGFVEEGKWCFRLMQEYGI 652



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 202/423 (47%), Gaps = 63/423 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+ +WNSMI+ Y   G + E    F ++L    +RPD  T   VL+ACG   D   
Sbjct: 177 IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD--- 233

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +  +   + ++++  +LI MY++ G    AR+L D+M  +D  S++A+ISG + 
Sbjct: 234 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+D                            VLD   EM+  G++ N VT+ SI
Sbjct: 294 NGNAAQALD----------------------------VLD---EMRLEGIKMNFVTVVSI 322

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +     ++     IH Y +K+  + +++V+ A+I+ YAK G L  A++ F +     +
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           + W +II+AY  + D   A   F +M  NG QPD +T  ++ S  A           H  
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           ++ + W + + + G       V+ YA  +G+L  A ++ E       +PVK     W  L
Sbjct: 443 IMRRGWLMEDVVIG----NAVVDMYA-KLGLLDSAHKVFEI------IPVK-DVISWNTL 490

Query: 350 LYGASISG----DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           + G + +G     +E+ K + +   EI P N G ++ +   Y+  G   +  ++  ++ +
Sbjct: 491 ITGYAQNGLASEAIEVYKMM-EECKEIIP-NQGTWVSILPAYAHVGALQQGMKIHGRVIK 548

Query: 406 SGL 408
           + L
Sbjct: 549 TNL 551



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 38/256 (14%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D++SWN++I GY+Q G   E   +++ M     + P+  T VS+L A      +  GM+
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK 541

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI++++ +D+++   LI +Y KCG L  A +L  ++  +  V+++AIIS + +HG 
Sbjct: 542 IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGH 601

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            EK + LF                                EM   GV+P+ VT  S+ S 
Sbjct: 602 AEKTLKLFG-------------------------------EMLDEGVKPDHVTFVSLLSA 630

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL--- 240
            SH   ++ GK       +     ++     ++D   + G+L  A   +D  K   L   
Sbjct: 631 CSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMA---YDFIKDMPLQPD 687

Query: 241 -IIWTAIISAYAAHGD 255
             IW A++ A   HG+
Sbjct: 688 ASIWGALLGACRIHGN 703



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 35/241 (14%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S+   F   +H  ++ +     ++I   L+ +YA  G +  +R   D++  KD       
Sbjct: 129 STKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKD------- 181

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREMQASGVRPN 173
                                   +  WN++IS  V N   HEA+    + +  S +RP+
Sbjct: 182 ------------------------VYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPD 217

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +         L  G++IH +A K  +  N++VA ++I  Y++ GF   A+ +FD
Sbjct: 218 FYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               R +  W A+IS    +G+A++A+ + +EM   GI+ + VT  ++L  C   G +  
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 294 A 294
           A
Sbjct: 335 A 335


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 248/461 (53%), Gaps = 32/461 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+  D+VSWN++++G+           +F +ML     +P+  T +SVL++C    D  F
Sbjct: 213 MTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEG-FKPNMFTFISVLRSCSSLLDPEF 271

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  +I++    D ++  AL+ MYAK   L+ A    D + ++D             
Sbjct: 272 GKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRD------------- 318

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             + +W  +ISG  Q ++ E  +   R+MQ  G++PN  T++S 
Sbjct: 319 ------------------IFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASC 360

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  SH + L+ G+++H  AVK  +  +I+V +A++D Y K G +  A+ +F     R +
Sbjct: 361 LSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDI 420

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  IIS Y+ HG   KA+  F  ML+ GI PD  TF  VLSAC+  GLV++    F++
Sbjct: 421 VSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDS 480

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI PS+EHYACMV +L RA + +E   F+ +M + P + +W  +L    + G+V+
Sbjct: 481 MSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVD 540

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            G+     LFE+EP    +YI+++N+++  GRWD+   +R  M   G+ K PG SW+E  
Sbjct: 541 FGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVD 600

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
           G +  F+++D S  K  +IY  L++L   +   GYV   EV
Sbjct: 601 GQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEV 641



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 140/292 (47%), Gaps = 34/292 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ VSWN+++ GY+Q G  ++   LF +M      +    T+ +VL+ C  +  +  
Sbjct: 11  MPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECET-KFSKFTLSTVLKGCANTGSLRE 69

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   + S  ++D ++  +L+ MY+KCG+                            
Sbjct: 70  GKVLHALALRSGCEIDEFLGCSLVDMYSKCGT---------------------------- 101

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V  A+ +F  ++ P +  W+A+I+GL Q    +   +L   M+  G RPN  T+SS+
Sbjct: 102 ---VYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSL 158

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++  +L+ G+ IHG   K  ++ +  V+  +I  Y K+  +    +VF+      L
Sbjct: 159 VSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDL 218

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           + W A++S +       +   +F +ML  G +P+  TF +VL +C  S L+D
Sbjct: 219 VSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSC--SSLLD 268



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 112/229 (48%), Gaps = 2/229 (0%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A  LF  M      +WNA+++G  Q    + VL L  +M+    + +  T+S++   
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++  +L+ GK +H  A+++  + + ++  +++D Y+K G ++ A +VF + +   ++ W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +A+I+     G   +A  LF+ M   G +P+  T ++++S   + G +     I   +  
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC- 179

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +YG +        ++ +  ++R + +  +    M   P    W ALL G
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAM-TNPDLVSWNALLSG 227


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 249/453 (54%), Gaps = 33/453 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I+ WN++  GY + G Y+    L  +M        D V ++  L AC    D   G E+
Sbjct: 375 NIIIWNTIAGGYLRTGNYKGALELLSQMRKXGS-HLDSVALIIGLGACSHIGDAKLGKEI 433

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+F I S       + N+LI MY++C  L +A                     Y+     
Sbjct: 434 HSFAIRSCFGEVDTVKNSLITMYSRCKDLKHA---------------------YL----- 467

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                LFQ+M+   L +WN++ISG    +R E    L+REM  SG+ PN VTI+S+  L 
Sbjct: 468 -----LFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLC 522

Query: 185 SHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           +  +NL+ GKE H Y  +   +  ++ +  A++D YA++G +  A+RVFD    R  + +
Sbjct: 523 ARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTY 582

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           T++I+ Y   G+   A+ LF EM N  I+PD +T  AVLSAC+HSGLV +   +F  M  
Sbjct: 583 TSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRS 642

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            YG+ P +EH+ACM  +  RA  +++A E +  MP KP+  +W  L+    I  + E+G+
Sbjct: 643 LYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGE 702

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  + L E++PEN G Y+++AN+Y+ AG W++  +VR  M++ G+ K PG +W++   G 
Sbjct: 703 WAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDVGTGF 762

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F+  DTS   +++IY +LE L  +++E GY+
Sbjct: 763 SPFLVDDTSNANADEIYPLLEGLTMVIKEAGYI 795



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 207/403 (51%), Gaps = 11/403 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +I+ Y + GF ++  + +++M+   + RPD  T  SVL+ACG+  D+ FG EVH  +
Sbjct: 243 WNLLISSYVRNGFCQKALSAYKQMVKKGI-RPDNFTYPSVLKACGEELDLGFGKEVHESI 301

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
             S IK  L + NALI MY KCG +  AR L D++ ++D VS++++IS Y   G   +A 
Sbjct: 302 NASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAF 361

Query: 129 DLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +LF  M    +      WN +  G ++   ++  L+L+ +M+  G   ++V +       
Sbjct: 362 ELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGAC 421

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           SH  + K GKEIH +A+++ +     V  ++I  Y++   L  A  +F   + +SLI W 
Sbjct: 422 SHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWN 481

Query: 245 AIISAYAAHGDASKAVS-LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +IIS    H D S+  S L  EML +GI+P+ VT  +VL  CA    +    +    M+ 
Sbjct: 482 SIISG-CCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTR 540

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGDVEL 361
           +   +  +  +  +V + +R+ ++ EA   V  M  +     + +++  YG    G   L
Sbjct: 541 REDFKDHLLLWNALVDMYARSGKVLEARR-VFDMLGERDKMTYTSMIAGYGMQGEGQAAL 599

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
             F   + F+I+P++    I + +  S +G   +   + E+M+
Sbjct: 600 KLFEEMNNFQIKPDHI-TMIAVLSACSHSGLVTQGQLLFEKMR 641



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + ++SWNS+I+G       EE   L REML S +  P+ VT+ SVL  C + +++  
Sbjct: 472 MEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGI-EPNYVTIASVLPLCARVANLQH 530

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E H ++      K  L + NAL+ MYA+ G +  AR + D + ++D+++Y+++I+GY 
Sbjct: 531 GKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 590

Query: 120 VHGFVEKAMDLFQVMK----RPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQASGV 170
           + G  + A+ LF+ M     +P   T  AV+     SGLV     + + + +R +   G+
Sbjct: 591 MQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG--QLLFEKMRSLY--GL 646

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEI 196
            P+    + +  LF     L   KEI
Sbjct: 647 TPHLEHFACMTDLFGRAGLLNKAKEI 672



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 105/257 (40%), Gaps = 31/257 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           + S+L +C     +  G ++H  +I    +    +   L+  Y+    L  A  + +  +
Sbjct: 177 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 236

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
                 ++ +IS Y+ +GF +KA+  +                               ++
Sbjct: 237 ILHPFPWNLLISSYVRNGFCQKALSAY-------------------------------KQ 265

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   G+RP+  T  S+        +L  GKE+H     +R   ++ V  A+I  Y K G 
Sbjct: 266 MVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGK 325

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A+ +FD+   R  + W ++IS YA+ G  ++A  LF  M    I+ + + +  +   
Sbjct: 326 VGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGG 385

Query: 285 CAHSGLVDKAWDIFNAM 301
              +G    A ++ + M
Sbjct: 386 YLRTGNYKGALELLSQM 402



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 108/249 (43%), Gaps = 37/249 (14%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ISS+ S  +   +L  G+++HG+ +   ++++  +   ++  Y+    L  A  + +   
Sbjct: 177 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 236

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS---GLVDK 293
                 W  +IS+Y  +G   KA+S + +M+  GI+PD  T+ +VL AC      G   +
Sbjct: 237 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 296

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL---- 349
             +  NA   ++ +   + H A ++ +  +  ++  A +   K+P +  A  W ++    
Sbjct: 297 VHESINASRIKWSL---IVHNA-LISMYGKCGKVGIARDLFDKIPER-DAVSWNSMISVY 351

Query: 350 -----------LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398
                      L+G+  + D+EL   +              +  +A  Y + G +  A  
Sbjct: 352 ASMGMWNEAFELFGSMWAEDIELNIII--------------WNTIAGGYLRTGNYKGALE 397

Query: 399 VREQMKESG 407
           +  QM++ G
Sbjct: 398 LLSQMRKXG 406


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 278/489 (56%), Gaps = 43/489 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+WN +I+GY Q G  ++   + + ++    LR D VT+ +++ A  ++ ++  
Sbjct: 295 MIEKDVVTWNLLISGYVQQGLVDDAIHMCK-LMRLENLRYDSVTLSTLMSAAARTHNLKL 353

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV  + I    + ++ + +  + MYAKCGS+  A+ + D   +KD + ++ +++ Y  
Sbjct: 354 GKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAD 413

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVI------------------------------ 146
            G   +A+ LF  M+     P + TWN++I                              
Sbjct: 414 SGLSGEALRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLIS 473

Query: 147 -----SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                +GLVQN   E  ++ +R+MQ SG+RPN+ +I+   S  +H ++L  G+ IHGY +
Sbjct: 474 WTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHGYII 533

Query: 202 KN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +N ++  ++   T+++D YAK G ++ A++ F       L ++ A+ISAYA +G+  +A+
Sbjct: 534 RNLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMKEAI 593

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           +L+  + +  I+PD +TFT++LSAC+H+G + +A +IF  M  ++G++P +EHY  MV +
Sbjct: 594 ALYRRLEDMAIKPDSITFTSLLSACSHAGDIVQAINIFTEMVSKHGMKPCLEHYGLMVDL 653

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L+ +   ++A E + +MP KP A++  +L+   +     EL  ++   L E EPEN+GNY
Sbjct: 654 LASSGETNKALELIKEMPYKPDARMIQSLVASNNKQHKTELVDYLSKQLLESEPENSGNY 713

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG--GLQSFVAKDTSGDKSEQ 438
           + ++N ++  G WDE  ++RE MK  GL K PG SWI+  G  G+  FVA D +  K+++
Sbjct: 714 VTISNAFAIEGSWDEVVKMREMMKAKGLKKKPGCSWIQIKGEXGVHLFVANDKTHIKNDE 773

Query: 439 IYLILERLL 447
           I  IL  LL
Sbjct: 774 IQRILALLL 782



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 201/403 (49%), Gaps = 38/403 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    +  P  VTV + L A      I  
Sbjct: 194 IPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGI-EPTRVTVSTCLSASANIRGIEE 252

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + ++MD  +  +++  Y K G ++YA     EM                 
Sbjct: 253 GKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYA-----EM----------------- 290

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    +F  M    + TWN +ISG VQ    +  + + + M+   +R ++VT+S++
Sbjct: 291 ---------IFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTL 341

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GKE+  Y +++ ++  I +A+  +D YAK G +  A++VFD    + L
Sbjct: 342 MSAAARTHNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDL 401

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF +M    + P+ +T+ +++ +   +G VD+A ++F  
Sbjct: 402 ILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQ 461

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  L +     EA  F+ KM    ++P++      L   +   
Sbjct: 462 MQSS-GIFPNLISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLA 520

Query: 358 DVELGKFVCDHLFE-IEPENTGNYII-MANLYSQAGRWDEADR 398
            +  G+ +  ++   ++  ++ +++  + ++Y++ G  ++A++
Sbjct: 521 SLNFGRSIHGYIIRNLQHSSSVSFVTSLVDMYAKCGDINQAEK 563



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 198/429 (46%), Gaps = 52/429 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EM+ + VL PD   V +V +ACG      FG  
Sbjct: 96  RNVFSWAAIIGLKCRIGLCEGALTGFVEMIENGVL-PDNYVVPNVCKACGALQWTWFGRG 154

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +++++ +   +++ ++L  MY KCG L+ AR + D++ +++ V+             
Sbjct: 155 VHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVA------------- 201

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++ G VQN  +E  + L+ +M+  G+ P  VT+S+  S 
Sbjct: 202 ------------------WNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSA 243

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T+I++ Y K G +  A+ +FDR   + ++ W
Sbjct: 244 SANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTW 303

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             +IS Y   G    A+ +   M    ++ D VT + ++SA A +     G   + + I 
Sbjct: 304 NLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIR 363

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           +    +  +  +        G +  A+++ ++T       V+    +W  LL   + SG 
Sbjct: 364 HCFESEIVLASTAVDMYAKCGSIVDAKKVFDST-------VEKDLILWNTLLAAYADSGL 416

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR- 414
             E  +   D   E  P N  T N II++ L  + G+ DEA  +  QM+ SG+   P   
Sbjct: 417 SGEALRLFYDMQLESVPPNMITWNSIILSLL--RNGQVDEAKEMFLQMQSSGI--FPNLI 472

Query: 415 SWIECSGGL 423
           SW     GL
Sbjct: 473 SWTTMMNGL 481



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 153/352 (43%), Gaps = 47/352 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  ++++      + +I   L+  YAKC +++ A+ L   +  
Sbjct: 36  ILQGCVYERDLCTGQQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRV 95

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII      G  E A+                  +G V             EM
Sbjct: 96  RNVFSWAAIIGLKCRIGLCEGAL------------------TGFV-------------EM 124

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +GV P+   + ++            G+ +HGY VK      ++VA+++ D Y K G L
Sbjct: 125 IENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVL 184

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           + A++VFD+   R+++ W A++  Y  +G   +A+ L ++M   GI+P  VT +  LSA 
Sbjct: 185 NDARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSAS 244

Query: 286 AH-----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+      G    A  I N +     +  S+ ++ C VG++       E  E +    ++
Sbjct: 245 ANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLV-------EYAEMIFDRMIE 297

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                W  L+ G    G V+    +C  L  +E     + + ++ L S A R
Sbjct: 298 KDVVTWNLLISGYVQQGLVDDAIHMC-KLMRLENLRY-DSVTLSTLMSAAAR 347



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR- 204
           +S L ++      L LV+EM+   VR        I     +  +L  G++IH   +KN  
Sbjct: 2   VSSLCKHGEIREALRLVKEMEFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGD 61

Query: 205 -YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            Y RN Y+ T ++  YAK   +  AQ +F R + R++  W AII      G    A++ F
Sbjct: 62  FYARNQYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTGF 121

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGV 320
            EM+ NG+ PD      V  AC   G +   W     + G   + G+   V   + +  +
Sbjct: 122 VEMIENGVLPDNYVVPNVCKAC---GALQWTW-FGRGVHGYLVKAGLHDCVFVASSLADM 177

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
             +   +++A +   K+P + +   W AL+ G
Sbjct: 178 YGKCGVLNDARKVFDKIPER-NVVAWNALMVG 208


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 242/438 (55%), Gaps = 33/438 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+  + +WN++++GY Q   +++   LFR M +  V +PD  T+  +L +C +   + F
Sbjct: 100 ISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNV-QPDRTTLAVILSSCSKLGILDF 158

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +   +  D+++ + L+ MY+KCG +  AR++ ++M+++D V           
Sbjct: 159 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV----------- 207

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++ ++   D  ++M+ +G+ P   + +S+
Sbjct: 208 --------------------CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASM 247

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  S++  G++IH   +K+ YD+N+YV +A+ID YAK G +  A+  FD    +++
Sbjct: 248 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNI 307

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVDKA   FN+
Sbjct: 308 VAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNS 367

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P  EHY C++  L RA R  E    + KMP K    +W  LL    +  + E
Sbjct: 368 MENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAE 427

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   +HLF I+P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SWI+  
Sbjct: 428 LGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQK 487

Query: 421 GGLQSF-VAKDTSGDKSE 437
            G+++F VA D   D  E
Sbjct: 488 DGVRAFMVADDLGADGGE 505



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 151/317 (47%), Gaps = 37/317 (11%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           D  + N+LI MY KC  +D A  + + +     VS++ +I+G+   G   KA+++  +M+
Sbjct: 7   DQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQ 66

Query: 136 -----------------------------------RPGLSTWNAVISGLVQNNRHEAVLD 160
                                              RP ++TWN ++SG  Q  +H+  ++
Sbjct: 67  EAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIE 126

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L R MQ   V+P+  T++ I S  S    L  G+++H  +V+     +++VA+ ++D Y+
Sbjct: 127 LFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYS 186

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K G +  A+ +F++   R ++ W +IIS    H    +A   F +M  NGI P   ++ +
Sbjct: 187 KCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYAS 246

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           ++++C+    +     I +A   + G   +V   + ++ + ++   + +A  F   M +K
Sbjct: 247 MINSCSRLSSIPHGRQI-HAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMK 305

Query: 341 PSAKVWGALLYGASISG 357
            +   W  +++G + +G
Sbjct: 306 -NIVAWNEMIHGYAQNG 321



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           +V  ++ID Y K   +  A +VF+     +++ W  +I+ +   G  +KAV + + M   
Sbjct: 9   HVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEA 68

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           G +P+ VT++ +L++C  +  V  A  +F+ +S     +PSV  +  ++    +  +  +
Sbjct: 69  GFEPNEVTYSNLLASCIKARDVHSARAMFDKIS-----RPSVTTWNTLLSGYCQEEQHQD 123

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFV 365
             E   +M    V+P       +L   S  G ++ G+ V
Sbjct: 124 TIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 162


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 258/458 (56%), Gaps = 8/458 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M + Y+Q    +E   LF +ML   +  PD  T V  + +C    D   
Sbjct: 218 MPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGI-TPDDTTWVVTISSCSSIGDPTL 276

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
              +   + + HI ++ ++  AL+ M+AK G+L+ AR + DE+ S ++ V+++ +IS Y 
Sbjct: 277 ADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYT 336

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G +  A +LF  M +  + +WN++I+G  QN      ++L +EM     ++P+ VTI+
Sbjct: 337 RVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIA 396

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S   H   LK    +     +      I    ++I  Y+K G +  A R+F     R
Sbjct: 397 SVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR 456

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ +  +IS +AA+G   +A+ L   M   GI+PD VT+  VL+AC+H+GL+++  ++F
Sbjct: 457 DVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVF 516

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            ++       P+V+HYACMV +L RA  + EA   +  MP+KP A V+G+LL  + I   
Sbjct: 517 KSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKR 571

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V LG+     LFE+EP+N GNY++++N+Y+  GRW++  RVRE MK+ GL K  G SW+E
Sbjct: 572 VGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             G +  F   D S ++S+ IY +L  L   M+  G+V
Sbjct: 632 YKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFV 669



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 213/510 (41%), Gaps = 114/510 (22%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   ++ M+  YS+ G + +  +LF+   +S  LRP     + +++  G+S ++      
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFK-CTHSLNLRPQPFVYIYLIKLAGKSGNLF----- 117

Query: 65  HNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK----------------- 106
           H +V++  HI  D +I NA++ MYAK G +D AR L ++M+++                 
Sbjct: 118 HAYVLKLGHID-DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 176

Query: 107 --------------DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
                         + ++++++++GY   G +E A   F  M    + +WNA+ S   Q 
Sbjct: 177 ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQK 236

Query: 153 NRHEAVLDLVREMQASGVRPN----AVTISS----------------------------- 179
              +  L+L  +M   G+ P+     VTISS                             
Sbjct: 237 ECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVK 296

Query: 180 --IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +  + + F NL+  + I     +    RN      +I  Y + G L  A+ +FD    
Sbjct: 297 TALLDMHAKFGNLEIARNIFD---ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAW- 295
           R ++ W ++I+ YA +G+++ ++ LF EM++   IQPD VT  +VLSAC H G +  ++ 
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 296 --DIFNAMSGQYGIQ--PSVEHYACMVGVLSRARRI------------------------ 327
             DI    + + GI    S+       G ++ A RI                        
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGH 473

Query: 328 -SEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
             EA + V  M    ++P    +  +L   S +G +  GK V      I+     +Y  M
Sbjct: 474 GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNV---FKSIQAPTVDHYACM 530

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +L  +AG  DEA  + + M     A + G
Sbjct: 531 VDLLGRAGELDEAKMLIQSMPMKPHAGVYG 560



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 33/296 (11%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I+   +H        +F     P  S ++ ++    +   H  V+ L +   +  +RP 
Sbjct: 40  LINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQ 99

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
                 +  L       K G   H Y +K  +  + ++  AI+D YAK G +  A+ +F+
Sbjct: 100 PFVYIYLIKLAG-----KSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFE 154

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +   R+L  W ++IS     G+ ++AV LFN M    I    +T+T++++  A  G ++ 
Sbjct: 155 QMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLES 210

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALL 350
           A   F+ M      + SV  +  M    ++     EA     +M    + P    W   +
Sbjct: 211 ARRYFDEMP-----ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTI 265

Query: 351 YGASISGD---------------VELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
              S  GD               + L  FV   L ++  +  GN  I  N++ + G
Sbjct: 266 SSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAK-FGNLEIARNIFDELG 320



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 40/261 (15%)

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           + +L S  SN++  ++ HG+ V N  +  N +V+  +I+             +F      
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF-------------------- 278
              +++ ++  Y+  G  ++ VSLF    +  ++P P  +                    
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLK 123

Query: 279 ----------TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                      A+L   A +G VD A ++F  M+     + ++  +  M+    ++   +
Sbjct: 124 LGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMA-----ERTLADWNSMISGCWKSGNET 178

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
           EA    + MP + +   W +++ G +  GD+E  +   D   E+   +  ++  M + Y+
Sbjct: 179 EAVVLFNMMPAR-NIITWTSMVTGYAKMGDLESARRYFD---EMPERSVVSWNAMQSAYA 234

Query: 389 QAGRWDEADRVREQMKESGLA 409
           Q     EA  +  QM E G+ 
Sbjct: 235 QKECPKEALNLFHQMLEEGIT 255


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 254/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D +SW ++I G +Q G ++E    F+EM        D  T  SVL ACG    +  
Sbjct: 230 MPEKDSISWTTIITGLTQNGLFKEAVDKFKEM-GIEGFCMDQFTFGSVLTACGGFLALDE 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H ++I +  + ++++ +AL+ MY KC ++ YA A+  +M  K+ +S          
Sbjct: 289 GKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVIS---------- 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A++ G  QN   E  + +  +MQ + + P+  T+ S+
Sbjct: 339 ---------------------WTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + HG A+ +     + V+ A+I  Y K G L  A ++F   K R  
Sbjct: 378 ISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDE 437

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA++S YA  G A++ +SLF  ML +GI PD VTF  VLSAC+ +GLV+K +  F  
Sbjct: 438 VSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFEC 497

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I P  +HY CM+ +LSRA R+ EA  F+++MP  P A  W  LL    ++G++E
Sbjct: 498 MVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLE 557

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + L ++EP+N  +YI+++++Y+  G+WD+  ++R+ M+E G+ K PG SWI+  
Sbjct: 558 IGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYK 617

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F A D S   S+QIY  LE L   M EEGYV
Sbjct: 618 NKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYV 653



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 210/445 (47%), Gaps = 43/445 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+VSWNS+++GY+  G   E   ++  ML    +  + +T  ++L        +  
Sbjct: 97  MPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +   +  L++ + L+ MYAK G ++ A  + +E+ +K+ V Y+ +I+G + 
Sbjct: 157 GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             F+ +A  LF  M      +W  +I+GL QN   +  +D  +EM   G   +  T  S+
Sbjct: 217 CRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSV 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +    F  L  GK+IH Y ++  Y  NI+V +A++D Y K   +  A+ VF + + +++
Sbjct: 277 LTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNV 336

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           I WTA++  Y  +G + +AV +F +M  N I PD  T  +V+S+CA+             
Sbjct: 337 ISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQ 396

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISE 329
              SGL+     + NA+   YG   S+EH               +  +V   ++  + +E
Sbjct: 397 ALASGLICFV-TVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANE 455

Query: 330 ATEFVSKM---PVKPSAKVWGALLYGASISGDVELG--KFVC---DHLFEIEPENTGNYI 381
                  M    + P    +  +L   S +G VE G   F C   +H     P+   +Y 
Sbjct: 456 TISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPD---HYT 512

Query: 382 IMANLYSQAGRWDEADRVREQMKES 406
            M +L S+AGR +EA     QM  S
Sbjct: 513 CMIDLLSRAGRLEEAKNFINQMPFS 537



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 162/365 (44%), Gaps = 36/365 (9%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
            + L+ C ++ +     ++H  +I +    + ++ N LI  Y K G L  AR + D +  
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
            +  S++ ++S Y   G+++    +F  M    + +WN+++SG   N      + +   M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 166 QASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
              G V  N +T S++  L S+   +  G++IHG   K  Y   ++V + ++D YAKTGF
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 225 LHGAQRVFDRFKGRSLII-------------------------------WTAIISAYAAH 253
           ++ A R+F+    +++++                               WT II+    +
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQN 248

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
           G   +AV  F EM   G   D  TF +VL+AC     +D+   I +A   +   Q ++  
Sbjct: 249 GLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQI-HAYIIRTDYQDNIFV 307

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELGKFVCD-HLFE 371
            + ++ +  + R +  A     KM  K +   W A+L G   +G   E  +  CD    E
Sbjct: 308 GSALLDMYCKCRNVKYAEAVFRKMRHK-NVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE 366

Query: 372 IEPEN 376
           I P++
Sbjct: 367 IHPDD 371



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 122/249 (48%), Gaps = 21/249 (8%)

Query: 162 VREMQASGVR----PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           V+++    +R    P     +++ + +    +LK  + +  +  +     N++    ++ 
Sbjct: 24  VKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ----PNLFSWNTLLS 79

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPV 276
            Y+K G+L   QRVFD      ++ W +++S YA +G  S++V ++N ML +G +  + +
Sbjct: 80  AYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRI 139

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
           TF+ +L   ++ G VD    I   +  ++G Q  +   + +V + ++   I++A     +
Sbjct: 140 TFSTMLILSSNRGFVDLGRQIHGQIF-KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEE 198

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFV--CDHLFEIEPE-NTGNYIIMANLYSQAGRW 393
           +P K        ++Y   I+G +   +F+   + LF+  PE ++ ++  +    +Q G +
Sbjct: 199 IPEK------NIVVYNTMITGLLRC-RFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 394 DEA-DRVRE 401
            EA D+ +E
Sbjct: 252 KEAVDKFKE 260


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 253/445 (56%), Gaps = 8/445 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLN-------SPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +N+MI  ++    Y      ++EML        +P+  PD  T   V+++C        G
Sbjct: 80  YNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIF-PDRFTFPFVIKSCSGLVCYNLG 138

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH  + +   K ++ + NALI MY KC SL  A  + D M ++D +S+++IISG++  
Sbjct: 139 KQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGV 198

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G + KA  LF +M    + +W A+ISG  +   +   L + R+MQ  GV P+ ++I S+ 
Sbjct: 199 GQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVL 258

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +    L+ GK IH Y  +N   R   +  A+++ Y+K G +  A ++FD+     +I
Sbjct: 259 PACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVI 318

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W+ +I   A HG A +A+ LF  M    I+P+ +TF  +LSACAH+G  ++    F++M
Sbjct: 319 SWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSM 378

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S  Y I+P VEHY C+V +L RA R+S+A + + KMP+KP +K+WG+LL       ++++
Sbjct: 379 SKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDI 438

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
                +HL E+EP++TGNY++++N+Y+   +WD   R+R+ +K   + K PG S I+ + 
Sbjct: 439 AIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDINN 498

Query: 422 GLQSFVAKDTSGDKSEQIYLILERL 446
            +Q FV+ D S   S  I+ +LE L
Sbjct: 499 VVQEFVSWDDSKPFSRDIFWLLELL 523



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 1/155 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R IVSW +MI+GY++ G Y +   +FR+M    V  PD ++++SVL AC Q   +  
Sbjct: 211 MPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGV-EPDEISIISVLPACAQLGALEV 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +   + +     ICNAL+ MY+KCG +  A  L D+MS  D +S+S +I G   
Sbjct: 270 GKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLAN 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           HG   +A++LF+ MK+  +        GL+    H
Sbjct: 330 HGKAREAIELFKRMKKAKIEPNGITFLGLLSACAH 364


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 258/458 (56%), Gaps = 8/458 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M + Y+Q    +E   LF +ML   +  PD  T V  + +C    D   
Sbjct: 218 MPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGI-TPDDTTWVVTISSCSSIGDPTL 276

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
              +   + + HI ++ ++  AL+ M+AK G+L+ AR + DE+ S ++ V+++ +IS Y 
Sbjct: 277 ADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYT 336

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G +  A +LF  M +  + +WN++I+G  QN      ++L +EM     ++P+ VTI+
Sbjct: 337 RVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIA 396

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S   H   LK    +     +      I    ++I  Y+K G +  A R+F     R
Sbjct: 397 SVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR 456

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ +  +IS +AA+G   +A+ L   M   GI+PD VT+  VL+AC+H+GL+++  ++F
Sbjct: 457 DVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVF 516

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            ++       P+V+HYACMV +L RA  + EA   +  MP+KP A V+G+LL  + I   
Sbjct: 517 KSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKR 571

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V LG+     LFE+EP+N GNY++++N+Y+  GRW++  RVRE MK+ GL K  G SW+E
Sbjct: 572 VGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             G +  F   D S ++S+ IY +L  L   M+  G+V
Sbjct: 632 YKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFV 669



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 213/510 (41%), Gaps = 114/510 (22%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   ++ M+  YS+ G + +  +LF+   +S  LRP     + +++  G+S ++      
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFK-CTHSLNLRPQPFVYIYLIKLAGKSGNMF----- 117

Query: 65  HNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK----------------- 106
           H +V++  HI  D +I NA++ MYAK G +D AR L ++M+++                 
Sbjct: 118 HAYVLKLGHID-DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 176

Query: 107 --------------DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
                         + ++++++++GY   G +E A   F  M    + +WNA+ S   Q 
Sbjct: 177 ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQK 236

Query: 153 NRHEAVLDLVREMQASGVRPN----AVTISS----------------------------- 179
              +  L+L  +M   G+ P+     VTISS                             
Sbjct: 237 ECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVK 296

Query: 180 --IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +  + + F NL+  + I     +    RN      +I  Y + G L  A+ +FD    
Sbjct: 297 TALLDMHAKFGNLEIARNIFD---ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAW- 295
           R ++ W ++I+ YA +G+++ ++ LF EM++   IQPD VT  +VLSAC H G +  ++ 
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 296 --DIFNAMSGQYGIQ--PSVEHYACMVGVLSRARRI------------------------ 327
             DI    + + GI    S+       G ++ A RI                        
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGH 473

Query: 328 -SEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
             EA + V  M    ++P    +  +L   S +G +  GK V      I+     +Y  M
Sbjct: 474 GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNV---FKSIQAPTVDHYACM 530

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            +L  +AG  DEA  + + M     A + G
Sbjct: 531 VDLLGRAGELDEAKMLIQSMPMKPHAGVYG 560



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 33/296 (11%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I+   +H        +F     P  S ++ ++    +   H  V+ L +   +  +RP 
Sbjct: 40  LINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQ 99

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
                 +  L       K G   H Y +K  +  + ++  AI+D YAK G +  A+ +F+
Sbjct: 100 PFVYIYLIKLAG-----KSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFE 154

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +   R+L  W ++IS     G+ ++AV LFN M    I    +T+T++++  A  G ++ 
Sbjct: 155 QMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLES 210

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALL 350
           A   F+ M      + SV  +  M    ++     EA     +M    + P    W   +
Sbjct: 211 ARRYFDEMP-----ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTI 265

Query: 351 YGASISGD---------------VELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
              S  GD               + L  FV   L ++  +  GN  I  N++ + G
Sbjct: 266 SSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAK-FGNLEIARNIFDELG 320



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 40/261 (15%)

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           + +L S  SN++  ++ HG+ V N  +  N +V+  +I+             +F      
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF-------------------- 278
              +++ ++  Y+  G  ++ VSLF    +  ++P P  +                    
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLK 123

Query: 279 ----------TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                      A+L   A +G VD A ++F  M+     + ++  +  M+    ++   +
Sbjct: 124 LGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMA-----ERTLADWNSMISGCWKSGNET 178

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
           EA    + MP + +   W +++ G +  GD+E  +   D   E+   +  ++  M + Y+
Sbjct: 179 EAVVLFNMMPAR-NIITWTSMVTGYAKMGDLESARRYFD---EMPERSVVSWNAMQSAYA 234

Query: 389 QAGRWDEADRVREQMKESGLA 409
           Q     EA  +  QM E G+ 
Sbjct: 235 QKECPKEALNLFHQMLEEGIT 255


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/471 (35%), Positives = 257/471 (54%), Gaps = 16/471 (3%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + + S I  +S  G      AL  +ML   +L P   T+ + L AC   S    G  +H 
Sbjct: 355 IFYTSAIHAHSSRGHRLPALALLSDMLAQGLL-PTAHTLSASLPACRGLSP---GRALHG 410

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYMVHGFVE 125
           +  +  +  D ++  AL+GMYA+ G    ARAL D+M  D   VS +A+++ Y   G ++
Sbjct: 411 YAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALD 470

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A  LF  +       WNA+I G  Q+ R    L L R M  SGV P+ VT+  + S  +
Sbjct: 471 DARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVA 530

Query: 186 HFSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
               ++ GK +H Y VKN  R   ++ V TA+ID Y K G L  A  VF     + +++W
Sbjct: 531 QLGTVESGKWLHSY-VKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVW 589

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I+ YA HGD+ KA+ +F +    G+ P  +TF  +L+AC+HSG+V++  + F +M  
Sbjct: 590 NAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMER 649

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YGI P +EHY CMV +L RA  I EA   V  M + P A +W +LL    +  ++ LG+
Sbjct: 650 EYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQ 709

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            + D+L      N+G YI+++N+Y+  G W E  RVR  MK SG+ K PG S IE    +
Sbjct: 710 QIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREV 769

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
             FVA D S  ++++IY++L+++ GL++E G+V         LDE  +E A
Sbjct: 770 YEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKA 820



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +D V WN+MI GY+Q G   E   LFR ML S V  PD VTVV VL A  Q   +  
Sbjct: 479 LPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGV-EPDEVTVVLVLSAVAQLGTVES 537

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H++V  S  +++ + +  ALI MY KCGSL  A  +   + DKD V ++A+I+GY 
Sbjct: 538 GKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYA 597

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           +HG   KA+++F   +  GL   +    GL+    H  +++  RE
Sbjct: 598 MHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGRE 642



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 159/400 (39%), Gaps = 76/400 (19%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEM 103
           VS+L +C  +       E+H  V+ + +    D  +   L   YA  G LD + ALL   
Sbjct: 293 VSLLTSCSTARR---AAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRT 349

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            D   + Y++ I  +   G            + P L+                    L+ 
Sbjct: 350 RDPTAIFYTSAIHAHSSRGH-----------RLPALA--------------------LLS 378

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT- 222
           +M A G+ P A T+S+          L  G+ +HGYA K     + YVATA++  YA+  
Sbjct: 379 DMLAQGLLPTAHTLSAS---LPACRGLSPGRALHGYAFKLALAGDSYVATALLGMYARAG 435

Query: 223 -------------------------------GFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
                                          G L  A+ +FD    +  + W A+I  Y 
Sbjct: 436 DATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYT 495

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            HG  ++A+ LF  ML +G++PD VT   VLSA A  G V+    + + +     +Q SV
Sbjct: 496 QHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSV 555

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKFVCDHL 369
                ++ +  +   + +A +    +  K    VW A++ G ++ GD    L  FV    
Sbjct: 556 RVGTALIDMYCKCGSLGDAVDVFHGIGDK-DIVVWNAMINGYAMHGDSRKALEMFVQSRE 614

Query: 370 FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM-KESGL 408
             + P +   +I + N  S +G  +E     + M +E G+
Sbjct: 615 QGLWPTDI-TFIGLLNACSHSGMVEEGREFFQSMEREYGI 653



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 23/243 (9%)

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVK----NRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           +T     SL +  S  +   E+H   ++    +  DR   VA  +   YA +G L  +  
Sbjct: 287 LTADRAVSLLTSCSTARRAAELHAAVLRTGLLDATDRA--VAFRLQRAYAASGRLDLSLA 344

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--AHS 288
           +  R +  + I +T+ I A+++ G    A++L ++ML  G+ P   T +A L AC     
Sbjct: 345 LLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSP 404

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G     +    A++G   +  +      ++G+ +RA   + A      M   P      A
Sbjct: 405 GRALHGYAFKLALAGDSYVATA------LLGMYARAGDATAARALFDDMLPDPHVVSVTA 458

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKE 405
           +L   +  G ++  + + D L       T +++    M + Y+Q GR +EA R+  +M  
Sbjct: 459 MLTCYADMGALDDARSLFDGL------PTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLG 512

Query: 406 SGL 408
           SG+
Sbjct: 513 SGV 515


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 156/427 (36%), Positives = 240/427 (56%), Gaps = 34/427 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++VSWN+MIA  +Q G   E   L  EM  +    P+  T+V++L AC + + +  G +
Sbjct: 385 RNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGEC-PNSFTLVNLLPACSRVASVKMGKQ 443

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H + I   +  DL++ NALI +YAKCG L+ AR + D  S+KD VSY+ +I GY     
Sbjct: 444 IHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQC 502

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +++ LFQ                               +M+ +G+  +AV+     S 
Sbjct: 503 CFESLHLFQ-------------------------------QMRLAGIEHDAVSFMGCLSA 531

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S+ S  K GKEIHG  VK   D + ++A +++D Y K G L  A ++F+R   + +  W
Sbjct: 532 CSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASW 591

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +I  Y  HG    A  LF+ M ++GI+ D V++ AVLS C+H GLVD+    F+ M  
Sbjct: 592 NTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIA 651

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           Q  I+P   HYACMV +L RA ++SE+ E +  MP + ++ VWGALL    I GD+EL +
Sbjct: 652 Q-NIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELAR 710

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
              +HLFE++PEN+G Y ++ N+YS++G W+EA+ V++ MK   + K P  SW++    L
Sbjct: 711 LAAEHLFELKPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKL 770

Query: 424 QSFVAKD 430
           Q+F+  D
Sbjct: 771 QAFLVGD 777



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 39/338 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-TVVSVLQACGQSSDIV 59
           M  RD+VSWNS+++     G  E+ K     M+ S V  P  V ++VS+L ACG   D  
Sbjct: 180 MPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGV--PVNVASLVSILPACGTERDEG 237

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           FG+ VH  V++  +   + + NAL+ MY K G L                          
Sbjct: 238 FGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDL-------------------------- 271

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                E +M +F  M+     +WN+ I        HE VL++ R M    V P +VT+SS
Sbjct: 272 -----ESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSS 326

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +            GKE+HGY+++   + +I++A  ++D YAK G    A  +F+  + R+
Sbjct: 327 LLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRN 386

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KA 294
           ++ W A+I+    +G  ++A  L  EM  NG  P+  T   +L AC+    V       A
Sbjct: 387 VVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHA 446

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           W I  ++     +  ++       G L+ AR I + +E
Sbjct: 447 WSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE 484



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 197/406 (48%), Gaps = 40/406 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ VSWNS I  ++  GF+E+   +FR M    V  P  VT+ S+L A         
Sbjct: 281 MQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDV-TPGSVTLSSLLPALVDLGYFHL 339

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + I   ++ D++I N L+ MYAK G  + A A+ + +  ++ VS+         
Sbjct: 340 GKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSW--------- 390

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                 NA+I+ L QN        LV EMQ +G  PN+ T+ ++
Sbjct: 391 ----------------------NAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNL 428

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  +++K GK+IH ++++     +++V+ A+ID YAK G L+ A+ +FDR + +  
Sbjct: 429 LPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE-KDG 487

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + +  +I  Y+      +++ LF +M   GI+ D V+F   LSAC++     +  +I   
Sbjct: 488 VSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGV 547

Query: 301 MSGQ-YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +  +     P + +   ++ V ++   +  A++  +++  K  A  W  ++ G  + G +
Sbjct: 548 LVKRLLDSHPFLAN--SLLDVYTKGGMLDTASKIFNRITQKDVAS-WNTMILGYGMHGQI 604

Query: 360 ELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           ++   + D + +  IE ++  +YI + ++ S  G  D   +   QM
Sbjct: 605 DVAFELFDLMKDDGIEYDHV-SYIAVLSVCSHGGLVDRGKKYFSQM 649



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 15/204 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S++D VS+N++I GYSQ     E   LF++M  + +   D V+ +  L AC   S    G
Sbjct: 483 SEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGI-EHDAVSFMGCLSACSNLSAFKQG 541

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            E+H  +++  +    ++ N+L+ +Y K G LD A  + + ++ KD  S++ +I GY +H
Sbjct: 542 KEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMH 601

Query: 122 GFVEKAMDLFQVMKRPGLS----TWNAVIS-----GLVQNNRHEAVLDLVREMQASGVRP 172
           G ++ A +LF +MK  G+     ++ AV+S     GLV   +         +M A  ++P
Sbjct: 602 GQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGK-----KYFSQMIAQNIKP 656

Query: 173 NAVTISSIFSLFSHFSNLKGGKEI 196
             +  + +  L      L    EI
Sbjct: 657 QQMHYACMVDLLGRAGQLSESAEI 680



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 132/313 (42%), Gaps = 41/313 (13%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTV---VSVLQACGQSSDIVF 60
           R    WNS+    +      E   ++  M+ S V RPD  T    +    A  Q+     
Sbjct: 78  RSAFLWNSLSRALASAALPCEALRVYNRMVRSGV-RPDDRTFPFALHAAAAVAQAEHPAK 136

Query: 61  GMEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E+H   +   + + D++  N L+  YA CG    AR + DEM  +D VS+++++S  +
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G +E A       KR                    AV+ ++R    SGV  N  ++ S
Sbjct: 197 TNGMLEDA-------KR--------------------AVVGMMR----SGVPVNVASLVS 225

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I        +   G  +HG  +K   +  + +  A++D Y K G L  +  VF+  + ++
Sbjct: 226 ILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKN 285

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            + W + I  +A  G     + +F  M  + + P  VT +++L A     LVD  +    
Sbjct: 286 EVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA-----LVDLGYFHLG 340

Query: 300 AMSGQYGIQPSVE 312
                Y I+ +VE
Sbjct: 341 KELHGYSIRRAVE 353


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 255/462 (55%), Gaps = 37/462 (8%)

Query: 9    WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
            WN MI G++  G +     L+ +M+    L+PD       L++C   SD+  G  +H  +
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKG-LKPDKFAFPFALKSCAGLSDLQRGKVIHQHL 844

Query: 69   IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +      DL++  AL+ MYAKCG ++ AR + D+M+ +D VS                  
Sbjct: 845  VCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVS------------------ 886

Query: 129  DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                         W ++ISG   N  +   L     M++SGV PN V+I S+     +  
Sbjct: 887  -------------WTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLG 933

Query: 189  NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
             L+ G+  H Y ++  ++ +I VATAI+D Y+K G L  A+ +FD   G+ L+ W+A+I+
Sbjct: 934  ALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIA 993

Query: 249  AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            +Y  HG   KA+ LF++M+  G++P  VTFT VLSAC+HSGL+++    F  M+ ++ I 
Sbjct: 994  SYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIA 1053

Query: 309  PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
              + +YACMV +L RA ++SEA + +  MPV+P A +WG+LL    I  +++L + + DH
Sbjct: 1054 RKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADH 1113

Query: 369  LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
            LF ++P + G +++++N+Y+   RW+E ++VR+ M   G  KI G S +E    +  F  
Sbjct: 1114 LFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGV 1173

Query: 429  KDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEES 465
             D S  + E++Y  LE L   M+  GYV     +L ++EEE+
Sbjct: 1174 GDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEA 1215



 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 257/457 (56%), Gaps = 33/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D++SW++MIA Y+      E   LF EM+      P+ VTVVS LQAC  S ++  
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR-FEPNSVTVVSALQACAVSRNLEE 325

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   +    ++D  +  ALI MY KC   D                          
Sbjct: 326 GKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPD-------------------------- 359

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                +A+DLFQ + +  + +W A++SG  QN      + + R M + G++P+AV +  I
Sbjct: 360 -----EAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKI 414

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S     +    +HGY V++ ++ N++V  ++I+ Y+K G L  A ++F     R +
Sbjct: 415 LAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDV 474

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +IW+++I+AY  HG   +A+ +F++M+ N  ++P+ VTF ++LSAC+H+GLV++   IF+
Sbjct: 475 VIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFD 534

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y ++P  EH+  MV +L R  ++ +A + +++MP+     VWGALL    I  ++
Sbjct: 535 RMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNI 594

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+    +LF ++P + G YI+++N+Y+  G+WD    +R ++KE GL K+ G+S +E 
Sbjct: 595 EMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEV 654

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            GG+ SF+A D     S++IY +L +L   M +E Y+
Sbjct: 655 RGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYI 691



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 186/404 (46%), Gaps = 37/404 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + D V W SM+ GY Q    EE  ALF +M+    +  D VT+VSV+ AC Q  ++  G 
Sbjct: 167 RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGS 226

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH  VI      DL + N+L+ +YAK G    A  L  +M +KD +S            
Sbjct: 227 CVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS------------ 274

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W+ +I+    N      L+L  EM      PN+VT+ S   
Sbjct: 275 -------------------WSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQ 315

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   NL+ GK+IH  AV   ++ +  V+TA+ID Y K      A  +F R   + ++ 
Sbjct: 316 ACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVS 375

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W A++S YA +G A K++ +F  ML++GIQPD V    +L+A +  G+  +A    +   
Sbjct: 376 WVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL-CLHGYV 434

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            + G   +V   A ++ + S+   + +A +    M V+    +W +++    I G     
Sbjct: 435 VRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEA 493

Query: 363 KFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             + D + +   + P N   ++ + +  S AG  +E  ++ ++M
Sbjct: 494 LEIFDQMVKNSTVRPNNV-TFLSILSACSHAGLVEEGLKIFDRM 536



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 165/351 (47%), Gaps = 35/351 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WNS +  Y +   +EE   LF  M+ +    PD  T+   L+AC     +  G  +H F 
Sbjct: 70  WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129

Query: 69  IES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
            ++  I  D+++ +AL+ +Y+KCG +  A  + +E    D V ++++++GY         
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ-------- 181

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSLFSH 186
                                  QNN  E  L L  +M     V  + VT+ S+ S  + 
Sbjct: 182 -----------------------QNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQ 218

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             N+K G  +HG  ++  +D ++ +  ++++ YAKTG    A  +F +   + +I W+ +
Sbjct: 219 LLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTM 278

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ YA +  A++A++LF+EM+    +P+ VT  + L ACA S  +++   I + ++   G
Sbjct: 279 IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKI-HKIAVWKG 337

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +        ++ +  +     EA +   ++P K     W ALL G + +G
Sbjct: 338 FELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSGYAQNG 387



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 154/344 (44%), Gaps = 70/344 (20%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M+ RD+VSW SMI+GY+  G+  E    F  M +S V+ P+ V+++SVL ACG    +  
Sbjct: 879  MAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI-PNRVSILSVLLACGNLGALRK 937

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G   H++VI++  + D+ +  A++ MY+KCGSLD AR L DE + KD V +SA+I+ Y +
Sbjct: 938  GEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGI 997

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            HG   KA+DLF                                +M  +GVRP+ VT + +
Sbjct: 998  HGHGRKAIDLFD-------------------------------QMVKAGVRPSHVTFTCV 1026

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRS 239
             S  SH   L+ GK              +Y                  Q + + F   R 
Sbjct: 1027 LSACSHSGLLEEGK--------------MYF-----------------QLMTEEFVIARK 1055

Query: 240  LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            L  +  ++      G  S+AV L   M    ++PD   + ++L AC     +D A  I +
Sbjct: 1056 LSNYACMVDLLGRAGQLSEAVDLIENM---PVEPDASIWGSLLGACRIHNNLDLAEKIAD 1112

Query: 300  AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
             +   + + P    Y  ++  +  A+      E V KM  +  A
Sbjct: 1113 HL---FHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGA 1153



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 35/331 (10%)

Query: 118  YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
            Y+    ++ A  +F+ +  P    WN +I G   + R  + L+L  +M   G++P+    
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 178  SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
                   +  S+L+ GK IH + V      +++V  A++D YAK G +  A+ VFD+   
Sbjct: 822  PFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV 881

Query: 238  RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA--- 294
            R L+ WT++IS YA +G  S+ +  F+ M ++G+ P+ V+  +VL AC + G + K    
Sbjct: 882  RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWF 941

Query: 295  ----------WDIF--NAMSGQYGIQPSVEHYACMV------------------GVLSRA 324
                      +DI    A+   Y    S++   C+                   G+    
Sbjct: 942  HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHG 1001

Query: 325  RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYII 382
            R+  +  + + K  V+PS   +  +L   S SG +E GK     + E  +      NY  
Sbjct: 1002 RKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYAC 1061

Query: 383  MANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            M +L  +AG+  EA  + E M     A I G
Sbjct: 1062 MVDLLGRAGQLSEAVDLIENMPVEPDASIWG 1092



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 37/247 (14%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
            +V + QAC     +    ++H+ V ++ I  D +    L  +YAKC SL  AR + DE 
Sbjct: 6   VLVDLFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
                                            P +  WN+ +    +  + E  L L  
Sbjct: 63  P-------------------------------HPNVHLWNSTLRSYCREKQWEETLRLFH 91

Query: 164 EMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAK 221
            M  + G  P+  TI       +    L+ GK IHG+A KN     +++V +A+++ Y+K
Sbjct: 92  LMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSK 151

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTA 280
            G +  A +VF+ F+    ++WT++++ Y  + D  +A++LF++M + + +  DPVT  +
Sbjct: 152 CGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVS 211

Query: 281 VLSACAH 287
           V+SACA 
Sbjct: 212 VVSACAQ 218



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 2/182 (1%)

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +  LF   +N +   ++H    K     + + AT +   YAK   L  A++VFD     +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + +W + + +Y       + + LF+ M+   G  PD  T    L ACA   +++    I 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
                   I   +   + +V + S+  ++ EA +   +   +P   +W +++ G   + D
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNND 185

Query: 359 VE 360
            E
Sbjct: 186 PE 187



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 132/331 (39%), Gaps = 53/331 (16%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG------VTVVSVLQACGQSSDIVF 60
           V++ S+++  S  G  EE   +F  M++   LRPD       V ++  +   G++ DI+ 
Sbjct: 511 VTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIIN 570

Query: 61  GMEV-----------------HNFVI-ESHIKMDLWICNALIG-------MYAKCGSLDY 95
            M +                 HN  + E+  K   W+  +  G       +YA  G  D 
Sbjct: 571 RMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDN 630

Query: 96  A---RALLDEMSDKDEVSYSAIISGYMVHGFV---------EKAMDLFQVMK-RPGLSTW 142
               R  + E   K     S +     VH F+         +K  +L + ++ + G   +
Sbjct: 631 VAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVY 690

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK-EIHGYAV 201
              +  L+ +    AVL   + ++A+  +   +  +      S FS LK    +I  Y +
Sbjct: 691 IPDLDFLLHDT--GAVLQFWQRIKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGL 748

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           +  YD  I    AI+  Y     +  A  VF+        +W  +I  +A  G    ++ 
Sbjct: 749 Q--YDSRILTKFAIM--YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLE 804

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           L+++M+  G++PD   F   L +CA  GL D
Sbjct: 805 LYSKMMEKGLKPDKFAFPFALKSCA--GLSD 833


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 257/456 (56%), Gaps = 2/456 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R++VS+N+MI G+++ G       LF +M  S  L PD  T++ +L  CGQ  +   
Sbjct: 124 MSDRNVVSYNTMILGFAKVGNILGILELFHDM-RSHGLEPDDFTMLGLLLLCGQLGETKL 182

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  + +S    +L + NAL+ MY KC  L  AR + D   +KD VS++ II+GY  
Sbjct: 183 GKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAK 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A DLF  +    + +WN++ISG  QN  +  V  L   M A  V+P+ VTI ++
Sbjct: 243 VGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNL 302

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+ IHG AVK       +  +A+ID Y K G +  A  +F++   + +
Sbjct: 303 ISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDV 362

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT +I+ +A HG  +KA+ LF+ M     +P+ VTF +VL+AC+HSGLVD+   IF++
Sbjct: 363 TTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSS 421

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P VEHY C+V +L R+ R+ +A   + KMP++PS  +WGA+L    +  ++E
Sbjct: 422 MKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNME 481

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L ++EPE  G YI+++N+Y+  GRW  +D +RE M   G+ KI G S +   
Sbjct: 482 LAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 541

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G +  F A +    +   I  IL  L   MR E  V
Sbjct: 542 GMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADV 577



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 210/498 (42%), Gaps = 70/498 (14%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N+MI G+      E+   ++R ML +    PD  T + +LQ     ++ V  +  H  V
Sbjct: 35  FNTMILGFPFSN--EKAFTIYRSMLQNGTY-PDRQTFLYLLQTTKFVAE-VKQIHCHALV 90

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
               +  + ++ N+LI  Y   G  + AR L DEMSD++ VSY+ +I G+   G +   +
Sbjct: 91  F-GLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGIL 149

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR----PNAVTISSIFSLF 184
           +LF  M+  GL   +  + GL+          L + + A   +     N +  +++  ++
Sbjct: 150 ELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMY 209

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
              + LK  +++         +++      II  YAK G L  A  +F++   R ++ W 
Sbjct: 210 VKCNELKLARKV----FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWN 265

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD----------KA 294
           ++IS YA +GD      LF  M    ++PD VT   ++SA A  G +D          K 
Sbjct: 266 SLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM 325

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------SE 329
                A SG   I        C  G + RA  I                         ++
Sbjct: 326 LTKIEAFSGSALID-----MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 380

Query: 330 ATEFVSKM--PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMA 384
           A E  S M    KP+   + ++L   S SG V+ G  +   +   + IEP    +Y  + 
Sbjct: 381 ALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEP-GVEHYGCLV 439

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPGRS-WIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +L  ++GR  +A  V E+M        P RS W    G + S      + + +E+  + L
Sbjct: 440 DLLCRSGRLLDAIGVIEKMPME-----PSRSIW----GAVLSACRMHRNMELAERALMEL 490

Query: 444 ERLLGLMREEGYVLLDEV 461
            + L   +E GY+LL  V
Sbjct: 491 LK-LEPEKEGGYILLSNV 507


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 262/471 (55%), Gaps = 40/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSW ++IAG++Q G +     LFRE +    +  D + + S+L AC     I  
Sbjct: 444 MPDKDVVSWTTIIAGHAQNGSHSRALELFRE-VQLEGIDLDVMMISSILLACSGLKLISS 502

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H+++I   +  DL + N ++ +Y +CG++DYA  + + +  KD VS          
Sbjct: 503 VKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVS---------- 551

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++IS  V N      L+L   M+ +GV P+++++ SI
Sbjct: 552 ---------------------WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 590

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  S LK GKEIHG+ ++  +     +A+ ++D YA+ G L  ++ VF+  + + L
Sbjct: 591 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 650

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++WT++I+AY  HG    A+ LF  M +  I PD + F AVL AC+HSGL+++      +
Sbjct: 651 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLES 710

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P  EHYAC+V +L RA  + EA +FV  M V+P+A+VW ALL    I  + E
Sbjct: 711 MKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKE 770

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     L E++PEN GNY++++N+YS   RW + + VR +MK SGL K PG SWIE  
Sbjct: 771 LGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVG 830

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEE 464
             + +F+A+D S  +S +IY  L ++   + +EG       +VL +  EEE
Sbjct: 831 NKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEE 881



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 212/473 (44%), Gaps = 100/473 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D +SWNSM++G+ Q G Y E    + EM ++   +PD V V+S++ A  +S + + 
Sbjct: 343 MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARSGNTLH 401

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM++H + +++ +  DL + N+L+ MYAK  S+ Y   + D+M DKD VS++ II+G+  
Sbjct: 402 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH-- 459

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN  H   L+L RE+Q  G+  + + ISSI
Sbjct: 460 -----------------------------AQNGSHSRALELFREVQLEGIDLDVMMISSI 490

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    +   KEIH Y ++     ++ +   I+D Y + G +  A R+F+  + + +
Sbjct: 491 LLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDV 549

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV------------------- 281
           + WT++IS Y  +G A++A+ LF+ M   G++PD ++  ++                   
Sbjct: 550 VSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGF 609

Query: 282 ----------------LSACAHSGLVDKAWDIFN-----------AMSGQYGIQPSVEHY 314
                           +   A  G ++K+ ++FN           +M   YG+      +
Sbjct: 610 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM------H 663

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FE 371
            C    +   RR+ + +       + P    + A+LY  S SG +  G+   + +   ++
Sbjct: 664 GCGRAAIDLFRRMEDES-------IAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQ 716

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           +EP    +Y  + +L  +A   +EA +  + M+    A++    W    G  Q
Sbjct: 717 LEPWPE-HYACLVDLLGRANHLEEAYQFVKGMEVEPTAEV----WCALLGACQ 764



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 153/295 (51%), Gaps = 32/295 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+VSWNSMI+ YS  G   E   LF EM  +  L P+  T V+ LQAC  SS I  GM
Sbjct: 244 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS-LAPNTYTFVAALQACEDSSFIKQGM 302

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H  V++S   +++++ NALI MYA+ G +  A  +   M D D +S+++++SG++ +G
Sbjct: 303 FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 362

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
              +A+  +                                EM+ +G +P+ V + SI +
Sbjct: 363 LYHEALQFYH-------------------------------EMRDAGQKPDLVAVISIIA 391

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   N   G +IH YA+KN  D ++ V  +++D YAK   +     +FD+   + ++ 
Sbjct: 392 ASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 451

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           WT II+ +A +G  S+A+ LF E+   GI  D +  +++L AC+   L+    +I
Sbjct: 452 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 506



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 163/358 (45%), Gaps = 35/358 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + I +WN+MI  Y   G       L+REM  S +   D  T   +L+ACG   D  +
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGI-PLDACTFPCILKACGLLKDRRY 198

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
           G EVH   I+      +++ N+++GMY KC  L+ AR L D M +K D VS++++IS Y 
Sbjct: 199 GAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYS 258

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G   +A+ LF                                EMQ + + PN  T  +
Sbjct: 259 SNGQSIEALRLFG-------------------------------EMQKASLAPNTYTFVA 287

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                   S +K G  IH   +K+ Y  N++VA A+I  YA+ G +  A  +F       
Sbjct: 288 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 347

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            I W +++S +  +G   +A+  ++EM + G +PD V   ++++A A SG       I +
Sbjct: 348 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI-H 406

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           A + + G+   ++    +V + ++   +        KMP K     W  ++ G + +G
Sbjct: 407 AYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS-WTTIIAGHAQNG 463



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 146/321 (45%), Gaps = 42/321 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSD 105
           SVL+ CG    +  G +VH  +I S+   + +++   L+ MY KCG L  A  L D M  
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 142

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K                                + TWNA+I   V N      L+L REM
Sbjct: 143 KT-------------------------------IFTWNAMIGAYVTNGEPLGSLELYREM 171

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           + SG+  +A T   I        + + G E+HG A+K  Y   ++VA +I+  Y K   L
Sbjct: 172 RVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDL 231

Query: 226 HGAQRVFDRFKGRSLII-WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +GA+++FDR   +  ++ W ++ISAY+++G + +A+ LF EM    + P+  TF A L A
Sbjct: 232 NGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQA 291

Query: 285 CAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           C  S  + +   I    +   Y I   V +   ++ + +R  ++ EA      M      
Sbjct: 292 CEDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNM------ 343

Query: 344 KVWGALLYGASISGDVELGKF 364
             W  + + + +SG V+ G +
Sbjct: 344 DDWDTISWNSMLSGFVQNGLY 364



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 4/182 (2%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAV-KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           SS+  L      L  G+++H + +  N    +++++T ++  Y K G L  A+++FD   
Sbjct: 82  SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 141

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +++  W A+I AY  +G+   ++ L+ EM  +GI  D  TF  +L AC    L D+ + 
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGL--LKDRRYG 199

Query: 297 I-FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
              + ++ + G    V     +VG+ ++   ++ A +   +MP K     W +++   S 
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 356 SG 357
           +G
Sbjct: 260 NG 261


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 250/456 (54%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW  +IAGY+Q     E   L  +ML +   RP+G T  S+L+A G       
Sbjct: 121 MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRAR-FRPNGFTFTSLLKATGACGGCSI 179

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   ++ +   D+++ +AL+ MYA+C  +D A  + D +  K+EVS          
Sbjct: 180 GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS---------- 229

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E  L    EMQ +G      T SS+
Sbjct: 230 ---------------------WNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSM 268

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS F+    L+ G+ +H + +K+      +V   ++  YAK+G +  A++VFDR   R L
Sbjct: 269 FSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDL 328

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++A A +G   +AV+ F E+   GIQ + +TF +VL+AC+H GLV +    F+ 
Sbjct: 329 VTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDM 388

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y +QP ++HY   V +L RA  + EA  FV KMP++P+A VWGALL    +  + +
Sbjct: 389 MK-DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAK 447

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G++  DH+FE++P++TG  +++ N+Y+  G+W++A RVR+ MK +G+ K P  SW++  
Sbjct: 448 MGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIE 507

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  KS  IY + E +   +++ GYV
Sbjct: 508 NSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYV 543



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 154/344 (44%), Gaps = 38/344 (11%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           ++L++  L P      S++ AC Q  ++     +H  +  S +  D ++ N+LI MY KC
Sbjct: 49  DLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKC 108

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G++  AR + D+M  +D VS++ +I+GY                                
Sbjct: 109 GAVSDARHVFDKMPSRDVVSWTYLIAGY-------------------------------A 137

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
           QN      + L+ +M  +  RPN  T +S+            G+++H  AVK  +D ++Y
Sbjct: 138 QNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVY 197

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V +A++D YA+   +  A  VFDR   ++ + W A+I+ +A   D    +  F EM  NG
Sbjct: 198 VGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNG 257

Query: 271 IQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
                 T++++ SA A  G +++  W   + +     +   V +   M+G+ +++  + +
Sbjct: 258 FGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVD 315

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373
           A +   +M  K     W  +L   +  G   LGK    H  EI 
Sbjct: 316 ARKVFDRMD-KRDLVTWNTMLTALAQYG---LGKEAVAHFEEIR 355



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 21/257 (8%)

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           LDL   + A  + P      SI +  + F NL G + IH +  ++    + ++  ++I  
Sbjct: 48  LDL---LHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHM 104

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y K G +  A+ VFD+   R ++ WT +I+ YA +   ++A+ L  +ML    +P+  TF
Sbjct: 105 YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 164

Query: 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
           T++L A    G      +  +A++ +Y     V   + ++ + +R  ++  A     ++ 
Sbjct: 165 TSLLKATGACGGCSIG-EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL- 222

Query: 339 VKPSAKVWGALLYGAS--ISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYS------- 388
           V  +   W AL+ G +    G+  L KF      E++    G  +   ++++S       
Sbjct: 223 VSKNEVSWNALIAGFARKADGETTLMKFA-----EMQRNGFGATHFTYSSMFSAFARIGA 277

Query: 389 -QAGRWDEADRVREQMK 404
            + GRW  A  ++   K
Sbjct: 278 LEQGRWVHAHLIKSGQK 294


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 258/450 (57%), Gaps = 36/450 (8%)

Query: 5   DIVSWNSMIAGYSQGGF---YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           D+V +N+MI GYS+ G      E   +FR+M    ++RP  +T VS+L+A    + +   
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHEALNIFRDM-RFRLIRPSLLTFVSLLRASASLTSLGLS 473

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H  + +  + +D++  +ALI +Y+ C  L  +R + DEM  KD              
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKD-------------- 519

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                            L  WN++ +G VQ + +E  L+L  E+Q S  RP+  T +++ 
Sbjct: 520 -----------------LVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMV 562

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +   + ++++ G+E H   +K   + N Y+  A++D YAK G    A + FD    R ++
Sbjct: 563 TAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVV 622

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W ++IS+YA HG+  KA+ +  +M++ GI+P+ +TF  VLSAC+H+GLV+     F  M
Sbjct: 623 CWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             ++GI+P  EHY CMV +L RA R+++A E + KMP KP+A VW +LL G + +G+VEL
Sbjct: 683 L-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVEL 741

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +   +     +P+++G++ +++N+Y+  G W EA +VRE+MK  G+ K PGRSWI  + 
Sbjct: 742 AEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINK 801

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            +  F++KD S  K+ QIY +L+ LL  +R
Sbjct: 802 EVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 206/438 (47%), Gaps = 65/438 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++I+SW ++++GY Q   ++E   LF  M +   L+PD     S+L +C     + F
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSM-SKFGLKPDMYACSSILTSCASLHALGF 368

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH + I++++  D ++ N+LI MYAKC  L  AR + D  +  D V ++A+I GY  
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                            Q   HEA L++ R+M+   +RP+ +T  S+
Sbjct: 429 LG---------------------------TQWELHEA-LNIFRDMRFRLIRPSLLTFVSL 460

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L   K+IHG   K   + +I+  +A+ID Y+    L  ++ VFD  K + L
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           +IW ++ + Y    +  +A++LF E+  +  +PD  TF  +++A             H  
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580

Query: 290 LVDKAWD----IFNAMSGQYGI--QPSVEHYA----------CMVGVLSRARRISE---A 330
           L+ +  +    I NA+   Y     P   H A          C   V+S      E   A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVE--LGKFVCDHLFEIEPENTGNYIIMAN 385
            + + KM    ++P+   +  +L   S +G VE  L +F     F IEPE T +Y+ M +
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVS 699

Query: 386 LYSQAGRWDEADRVREQM 403
           L  +AGR ++A  + E+M
Sbjct: 700 LLGRAGRLNKARELIEKM 717



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 37/290 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC----GQSS 56
           M +R++VSW++M++  +  G YEE   +F E   +    P+   + S +QAC    G+  
Sbjct: 105 MPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGR 164

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +VF  ++ +F+++S    D+++   LI  Y K G++DYAR + D + +K  V       
Sbjct: 165 WMVF--QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTV------- 215

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                                   TW  +ISG V+  R    L L  ++    V P+   
Sbjct: 216 ------------------------TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYI 251

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +S++ S  S    L+GGK+IH + ++   + +  +   +ID+Y K G +  A ++F+   
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            +++I WT ++S Y  +    +A+ LF  M   G++PD    +++L++CA
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 164/355 (46%), Gaps = 37/355 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++  V+W +MI+G  + G       LF +++   V+ PDG  + +VL AC     +  
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVV-PDGYILSTVLSACSILPFLEG 267

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  ++   ++MD  + N LI  Y KCG +  A  L + M +K+      IIS    
Sbjct: 268 GKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKN------IIS---- 317

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W  ++SG  QN  H+  ++L   M   G++P+    SSI
Sbjct: 318 ---------------------WTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSI 356

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G ++H Y +K     + YV  ++ID YAK   L  A++VFD F    +
Sbjct: 357 LTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADV 416

Query: 241 IIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +++ A+I  Y+  G   +  +A+++F +M    I+P  +TF ++L A A    +  +  I
Sbjct: 417 VLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQI 476

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              M  +YG+   +   + ++ V S    + ++     +M VK    +W ++  G
Sbjct: 477 HGLMF-KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLV-IWNSMFAG 529



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 40/294 (13%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  +I   +++D ++ N LI +Y++ G + YAR + ++M +++ VS+S ++S    HG 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+++ +F                           L+  R  + S   PN   +SS    
Sbjct: 126 YEESLVVF---------------------------LEFWRTRKDS---PNEYILSS---F 152

Query: 184 FSHFSNLKG-GK----EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
               S L G G+    ++  + VK+ +DR++YV T +ID Y K G +  A+ VFD    +
Sbjct: 153 IQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEK 212

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S + WT +IS     G +  ++ LF +++ + + PD    + VLSAC+    ++    I 
Sbjct: 213 STVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQI- 271

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +A   +YG++        ++    +  R+  A +  + MP K +   W  LL G
Sbjct: 272 HAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNK-NIISWTTLLSG 324


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 251/443 (56%), Gaps = 1/443 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R    WN+M+  ++         +L++ ML++  L P+  T   +LQAC Q SD+ F
Sbjct: 73  LPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL-PNNYTFSFLLQACAQLSDLSF 131

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H   +    +   ++ N L+ +YA C  +D AR L D   ++D V+++A+I+GY  
Sbjct: 132 GILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAK 191

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V  A  LF  M      +W+A+I+G  Q       L+L  +MQ +G RPN   I   
Sbjct: 192 SGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGA 251

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ IH Y  +NR   +  + TA+ID YAK G +  A RVFD    R +
Sbjct: 252 LTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDV 311

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             +T++IS  A HG ++ A+ +F  M N G+ P+ VTF  +LSAC+  GLV++   IF +
Sbjct: 312 FAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKS 371

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI+P V+HY C+V +L RA  + +A   V +MP++P + V GALL    + GDVE
Sbjct: 372 MTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVE 431

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   + L E   ++ G +++++N+Y+ A +W++  +VR+ M+E  + K+PG S IE  
Sbjct: 432 LGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVD 491

Query: 421 GGLQSFVAKDTSGDKSEQIYLIL 443
           G +  FVA D S    ++I L+L
Sbjct: 492 GAVFEFVAGDMSHVFMDEIVLLL 514



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 138/311 (44%), Gaps = 40/311 (12%)

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           L  +  L D  +    +S+ A+ +     G +  A  LF  + R     WN ++      
Sbjct: 36  LTVSGTLFDPFAAGRIISFCAVSA----QGDISHAYLLFLSLPRRTSFIWNTMLRAFTDK 91

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
                VL L + M ++G  PN  T S +    +  S+L  G  +H  AV+  ++   +V 
Sbjct: 92  KEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQ 151

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
             ++  YA    +  A+R+FD    R ++ WTA+I+ YA  G    A  LF+EM     +
Sbjct: 152 NGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM----PE 207

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
            + V+++A+++  A  GL  +A ++FN M    G +P   ++  +VG L+       A  
Sbjct: 208 KNAVSWSAMITGYAQIGLFREALELFNDMQIA-GFRP---NHGAIVGALT-------ACA 256

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
           F+            GAL  G  I   V+  + V D +        G  +I  ++Y++ G 
Sbjct: 257 FL------------GALDQGRWIHAYVDRNRMVLDRIL-------GTALI--DMYAKCGC 295

Query: 393 WDEADRVREQM 403
            + A RV ++M
Sbjct: 296 VETACRVFDEM 306


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 257/456 (56%), Gaps = 2/456 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS R++VS+N+MI G+++ G       LF +M  S  L PD  T++ +L  CGQ  +   
Sbjct: 189 MSDRNVVSYNTMILGFAKVGNILGILELFHDM-RSHGLEPDDFTMLGLLLLCGQLGETKL 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  + +S    +L + NAL+ MY KC  L  AR + D   +KD VS++ II+GY  
Sbjct: 248 GKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAK 307

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A DLF  +    + +WN++ISG  QN  +  V  L   M A  V+P+ VTI ++
Sbjct: 308 VGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNL 367

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G+ IHG AVK       +  +A+ID Y K G +  A  +F++   + +
Sbjct: 368 ISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDV 427

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT +I+ +A HG  +KA+ LF+ M     +P+ VTF +VL+AC+HSGLVD+   IF++
Sbjct: 428 TTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSS 486

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P VEHY C+V +L R+ R+ +A   + KMP++PS  +WGA+L    +  ++E
Sbjct: 487 MKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNME 546

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L ++EPE  G YI+++N+Y+  GRW  +D +RE M   G+ KI G S +   
Sbjct: 547 LAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 606

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G +  F A +    +   I  IL  L   MR E  V
Sbjct: 607 GMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADV 642



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 210/498 (42%), Gaps = 70/498 (14%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N+MI G+      E+   ++R ML +    PD  T + +LQ     ++ V  +  H  V
Sbjct: 100 FNTMILGFPFSN--EKAFTIYRSMLQNGTY-PDRQTFLYLLQTTKFVAE-VKQIHCHALV 155

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
               +  + ++ N+LI  Y   G  + AR L DEMSD++ VSY+ +I G+   G +   +
Sbjct: 156 F-GLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGIL 214

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR----PNAVTISSIFSLF 184
           +LF  M+  GL   +  + GL+          L + + A   +     N +  +++  ++
Sbjct: 215 ELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMY 274

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
              + LK  +++         +++      II  YAK G L  A  +F++   R ++ W 
Sbjct: 275 VKCNELKLARKV----FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWN 330

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD----------KA 294
           ++IS YA +GD      LF  M    ++PD VT   ++SA A  G +D          K 
Sbjct: 331 SLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM 390

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------SE 329
                A SG   I        C  G + RA  I                         ++
Sbjct: 391 LTKIEAFSGSALID-----MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 445

Query: 330 ATEFVSKM--PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMA 384
           A E  S M    KP+   + ++L   S SG V+ G  +   +   + IEP    +Y  + 
Sbjct: 446 ALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEP-GVEHYGCLV 504

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPGRS-WIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +L  ++GR  +A  V E+M        P RS W    G + S      + + +E+  + L
Sbjct: 505 DLLCRSGRLLDAIGVIEKMPME-----PSRSIW----GAVLSACRMHRNMELAERALMEL 555

Query: 444 ERLLGLMREEGYVLLDEV 461
            + L   +E GY+LL  V
Sbjct: 556 LK-LEPEKEGGYILLSNV 572


>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 498

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 252/446 (56%), Gaps = 1/446 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  +N+MI G   G    +   LF E+L    L+PD  T   VL+AC     +  G +V
Sbjct: 51  DVFVYNTMIRGLMLGKRPYDSLLLFNELLLG-CLKPDNYTYTFVLKACSNQKALPEGKQV 109

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +I++ I  +  I ++LI MY   GS+  A  +L E S+++ ++ +++ISGY+  G V
Sbjct: 110 HCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHV 169

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +KA  +F  MK   +++W+A+I+G  +N  H   L L  +M  S   PN   + S+ S  
Sbjct: 170 DKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSAC 229

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +H   L  G+ IH Y  +   D +I ++TA+ID YAK G +    + F +   R ++ W 
Sbjct: 230 AHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWG 289

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           AIIS +A +G A K   LF EML +GI P+ V F A+LSAC+H+G V++    FN M   
Sbjct: 290 AIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSACSHAGYVEEGKLYFNQMMVD 349

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            GI+PS+EHY CMV +L RA R+ EA EF+  MP KP++ +WG++L       D+  G +
Sbjct: 350 LGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKPNSVIWGSMLSACRTHNDLNRGSW 409

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              HL E+EP +   Y +   ++  AG   EA ++R+ +++ G+    G S+IE  G + 
Sbjct: 410 AFRHLIELEPRSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGMETTSGSSFIEVDGTIH 469

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLM 450
            F+  DT  +++ +IY + + L GL+
Sbjct: 470 EFLVGDTIHNEAAEIYKVWKGLNGLL 495



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 34/269 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+ SW+++I G ++ G + E  ALF +M+ S  L P+   +VS+L AC     +  
Sbjct: 179 MKAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTL-PNESALVSLLSACAHLGALHQ 237

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++      M + +  ALI MYAKCG +        +M  +D V++ AIISG+ +
Sbjct: 238 GRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAI 297

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  +K  +LF+                               EM A G+ PN V   +I
Sbjct: 298 YGQAKKCFELFE-------------------------------EMLADGIYPNGVIFVAI 326

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQR-VFDRFKGR 238
            S  SH   ++ GK      + +   R +I     ++D   + G L  A+  +    +  
Sbjct: 327 LSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKP 386

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEML 267
           + +IW +++SA   H D ++    F  ++
Sbjct: 387 NSVIWGSMLSACRTHNDLNRGSWAFRHLI 415


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 255/470 (54%), Gaps = 39/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D++S+N+MI+GY+     E    LFRE+L S   R +  T+V ++      + +  
Sbjct: 275 IDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNSSTLVGLIPVYLPFNHLQL 333

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              + N  ++  I +   +  AL  +Y +   + +AR L DE  +K              
Sbjct: 334 SRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK-------------- 379

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L++WNA+ISG  QN   +  + L +EM    + PN VT++SI
Sbjct: 380 -----------------SLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSI 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK +HG     R + N+YV+TA++D YAK G +  A+++FD    +++
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ Y  HG   +A+ LF EML +GI P  VTF ++L AC+HSGLV +  +IF++
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHS 541

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG QP  EHYACMV +L RA +++ A EF+ +MP++P   VWGALL    I  + E
Sbjct: 542 MANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE 601

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +       LF+++PEN G Y++++N+YS    + +A  VR+ +K+  LAK PG + IE  
Sbjct: 602 MANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEID 661

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
                F + D S  ++  I+ +LE+L G MRE GY        L +VE+E
Sbjct: 662 DQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDE 711



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 157/359 (43%), Gaps = 37/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SK D+  +N +I G+S  G  +    L+  +     LRPD  T    + A  +  D   
Sbjct: 72  VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERV 131

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H   I   +  +L++ +A++ +Y K    + AR + D M ++D V ++ +ISG+  
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + + E ++ +F  M   GLS                                ++ T++++
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSF-------------------------------DSTTLATV 220

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +     + G  I   A K     ++YV T +I  Y+K G     + +FD+     L
Sbjct: 221 LTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDL 280

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I + A+IS Y  + +   AV+LF E+L +G + +  T   ++        +  +  I N 
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQN- 339

Query: 301 MSGQYGI--QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +S + GI  QPSV     +  V  R   +  A +   + P K  A  W A++ G + +G
Sbjct: 340 LSLKIGIILQPSVS--TALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMISGYTQNG 395


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 271/502 (53%), Gaps = 44/502 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K ++  WN MI    +     +   L+ EM+ +   RP+  T  +VL+AC  +  +  G+
Sbjct: 99  KPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAH-FRPNKYTYPAVLKACSDAGVVAEGV 157

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVH 121
           +VH  +++  +  D  I ++ I MYA  G L  AR +LD+   + D V ++A+I GY+  
Sbjct: 158 QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRF 217

Query: 122 GFVEKAMDLFQVMK-RPGLSTWNAVISGL------------------------------- 149
           G VE A +LF+ M  R  +STWNA+ISG                                
Sbjct: 218 GEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGY 277

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
           +Q       L++  +MQ   +RP    + S+ S  ++   L  G+ IH YA +N    + 
Sbjct: 278 IQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDG 337

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            + T+++D YAK G +  A  VF++   + +  W A+I   A HG A  A+ LF++M   
Sbjct: 338 VLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM--- 394

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            I P+ +TF  VL+ACAH GLV K   IFN+M  +YG++P +EHY C+V +L RA  ++E
Sbjct: 395 DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTE 454

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A + VS +P +P+  VWGALL      G+VELG+ V   L E+EP+N+G Y +++N+Y++
Sbjct: 455 AEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAK 514

Query: 390 AGRWDEADRVREQMKESGLAKIPGRSWIECSGG-LQSFVAKDTSGDKSEQIYLILERLLG 448
           AGRW+E   VR+ MKE G+   PG S I+   G +  F+  D S  + + IY +L+++  
Sbjct: 515 AGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKE 574

Query: 449 LMREEGY------VLLDEVEEE 464
            ++ EGY      VL D  EEE
Sbjct: 575 RLQMEGYEPDPSQVLFDIDEEE 596



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 39/258 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SW++MI GY Q G + E   +F +M    + RP    + SVL AC     +  
Sbjct: 262 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKI-RPRKFVLPSVLSACANLGALDQ 320

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +   + I++D  +  +L+ MYAKCG +D A  + ++MS+K+  S++A+I G  +
Sbjct: 321 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 380

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+DLF  M                                   + PN +T   +
Sbjct: 381 HGRAEDAIDLFSKMD----------------------------------INPNEITFVGV 406

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +  +H   ++ G  I   +++  Y  +  I     I+D   + G L  A++V       
Sbjct: 407 LNACAHGGLVQKGLTIFN-SMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 465

Query: 239 -SLIIWTAIISAYAAHGD 255
            +  +W A++ A   HG+
Sbjct: 466 PTPAVWGALLGACRKHGN 483



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 138/306 (45%), Gaps = 22/306 (7%)

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E ++ +F  +++P +  WN +I   ++NN     + L  EM  +  RPN  T  ++    
Sbjct: 88  ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKAC 147

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIW 243
           S    +  G ++H + VK+    + ++ ++ I  YA  G L  A+R+ D   G    + W
Sbjct: 148 SDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCW 207

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I  Y   G+   A  LF  M +  +     T+ A++S  +  G+V+ A + F+ M  
Sbjct: 208 NAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKE 264

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVE 360
           +  I      ++ M+    +     EA E   +M    ++P   V  ++L   +  G ++
Sbjct: 265 RDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 319

Query: 361 LGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
            G+++  H +        + ++   + ++Y++ GR D A  V E+M    ++     SW 
Sbjct: 320 QGRWI--HTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVS-----SWN 372

Query: 418 ECSGGL 423
              GGL
Sbjct: 373 AMIGGL 378


>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
          Length = 496

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 253/456 (55%), Gaps = 8/456 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVF 60
           + RD+VSW S I+  ++ G      A    M++SP    P+ VT+++VL AC  S     
Sbjct: 28  APRDVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACADSPSSPL 87

Query: 61  GMEVHNFVIESHIKM---DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
              +   +    +K+    L +   L   Y        A  L D M  +  V+Y+ +ISG
Sbjct: 88  ASPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVTYNTMISG 147

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
            M +G V+ A ++F  M  P   +W A+I G V+N RH+  +D  R M   GV  + +T+
Sbjct: 148 LMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITL 207

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            ++ S  +    L  G  +H   ++ R +RN+ VA ++ID YA+ G ++ A +VF   + 
Sbjct: 208 VAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRK 267

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+++ W ++I  +AA+G  + A+ LF EM   G +PD VT T VL+AC+H+GL +     
Sbjct: 268 RTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRY 327

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ M+ +YG+   +EHY C+V +L RA R+ EA   V  MP++P+  V GALL G    G
Sbjct: 328 YDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHG 387

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++++ + +  HLFE++P+   NY++++N+Y+  G+WD A +VR  MK  G+ K PG S +
Sbjct: 388 NLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSTV 447

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           E  G +  FV    SGD+S  +   + ++LGL+  E
Sbjct: 448 EIDGDVHEFV----SGDQSHPLAGEIGQMLGLLWHE 479



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 131/312 (41%), Gaps = 77/312 (24%)

Query: 1   MSKRDIVSWNSMIA-------------------------------GYSQGGFYEECKALF 29
           M  R +V++N+MI+                               G+ + G ++E    F
Sbjct: 133 MPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCF 192

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           R ML   V   D +T+V+V+ AC +   +  GM VH  V+   ++ ++ + N+LI MYA+
Sbjct: 193 RAMLLDGV-ETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYAR 251

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG ++ A  +   +  +  VS++++I G+  +G    A++LF+ M+R             
Sbjct: 252 CGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRR------------- 298

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG-----YAVKNR 204
                              G +P+AVT++ + +  SH    + G   +      Y V  R
Sbjct: 299 ------------------QGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAAR 340

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLF 263
            +        ++D   + G L  A  V +    R + ++  A+++    HG+    + + 
Sbjct: 341 MEHY----GCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHGN----LDMA 392

Query: 264 NEMLNNGIQPDP 275
            +M+ +  + DP
Sbjct: 393 EQMMQHLFELDP 404


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 251/443 (56%), Gaps = 1/443 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R    WN+M+  ++         +L++ ML++  L P+  T   +LQAC Q SD+ F
Sbjct: 48  LPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL-PNNYTFSFLLQACAQLSDLSF 106

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H   +    +   ++ N L+ +YA C  +D AR L D   ++D V+++A+I+GY  
Sbjct: 107 GILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAK 166

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V  A  LF  M      +W+A+I+G  Q       L+L  +MQ +G RPN   I   
Sbjct: 167 SGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGA 226

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L  G+ IH Y  +NR   +  + TA+ID YAK G +  A RVFD    R +
Sbjct: 227 LTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDV 286

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             +T++IS  A HG ++ A+ +F  M N G+ P+ VTF  +LSAC+  GLV++   IF +
Sbjct: 287 FAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKS 346

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI+P V+HY C+V +L RA  + +A   V +MP++P + V GALL    + GDVE
Sbjct: 347 MTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVE 406

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   + L E   ++ G +++++N+Y+ A +W++  +VR+ M+E  + K+PG S IE  
Sbjct: 407 LGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVD 466

Query: 421 GGLQSFVAKDTSGDKSEQIYLIL 443
           G +  FVA D S    ++I L+L
Sbjct: 467 GAVFEFVAGDMSHVFMDEIVLLL 489



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 138/311 (44%), Gaps = 40/311 (12%)

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           L  +  L D  +    +S+ A+ +     G +  A  LF  + R     WN ++      
Sbjct: 11  LTVSGTLFDPFAAGRIISFCAVSA----QGDISHAYLLFLSLPRRTSFIWNTMLRAFTDK 66

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
                VL L + M ++G  PN  T S +    +  S+L  G  +H  AV+  ++   +V 
Sbjct: 67  KEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQ 126

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
             ++  YA    +  A+R+FD    R ++ WTA+I+ YA  G    A  LF+EM     +
Sbjct: 127 NGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM----PE 182

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
            + V+++A+++  A  GL  +A ++FN M    G +P+   +  +VG L+       A  
Sbjct: 183 KNAVSWSAMITGYAQIGLFREALELFNDMQIA-GFRPN---HGAIVGALT-------ACA 231

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
           F+            GAL  G  I   V+  + V D +        G  +I  ++Y++ G 
Sbjct: 232 FL------------GALDQGRWIHAYVDRNRMVLDRIL-------GTALI--DMYAKCGC 270

Query: 393 WDEADRVREQM 403
            + A RV ++M
Sbjct: 271 VETACRVFDEM 281


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 255/470 (54%), Gaps = 39/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D++S+N+MI+GY+     E    LFRE+L S   R +  T+V ++      + +  
Sbjct: 275 IDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNSSTLVGLIPVYLPFNHLQL 333

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              + N  ++  I +   +  AL  +Y +   + +AR L DE  +K              
Sbjct: 334 SRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK-------------- 379

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L++WNA+ISG  QN   +  + L +EM    + PN VT++SI
Sbjct: 380 -----------------SLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSI 421

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK +HG     R + N+YV+TA++D YAK G +  A+++FD    +++
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ Y  HG   +A+ LF EML +GI P  VTF ++L AC+HSGLV +  +IF++
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHS 541

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG QP  EHYACMV +L RA +++ A EF+ +MP++P   VWGALL    I  + E
Sbjct: 542 MANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE 601

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +       LF+++PEN G Y++++N+YS    + +A  VR+ +K+  LAK PG + IE  
Sbjct: 602 MANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEID 661

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
                F + D S  ++  I+ +LE+L G MRE GY        L +VE+E
Sbjct: 662 DQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDE 711



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 157/359 (43%), Gaps = 37/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SK D+  +N +I G+S  G  +    L+  +     LRPD  T    + A  +  D   
Sbjct: 72  VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERV 131

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H   I   +  +L++ +A++ +Y K    + AR + D M ++D V ++ +ISG+  
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + + E ++ +F  M   GLS                                ++ T++++
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSF-------------------------------DSTTLATV 220

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +     + G  I   A K     ++YV T +I  Y+K G     + +FD+     L
Sbjct: 221 LTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDL 280

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I + A+IS Y  + +   AV+LF E+L +G + +  T   ++        +  +  I N 
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQN- 339

Query: 301 MSGQYGI--QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +S + GI  QPSV     +  V  R   +  A +   + P K  A  W A++ G + +G
Sbjct: 340 LSLKIGIILQPSVS--TALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMISGYTQNG 395


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 243/456 (53%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSWNS+I+GY Q G   E   LF+ M+     + D +T + ++    + +D+ F
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE-QADHITYLMLISVSTRLADLKF 426

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+  I+S I +DL + NALI MYAKCG +  +  +   M   D V           
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTV----------- 475

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN VIS  V+       L +  +M+ S V P+  T    
Sbjct: 476 --------------------TWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT 515

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +  +  + GKEIH   ++  Y+  + +  A+I+ Y+K G L  + RVF+R   R +
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDV 575

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I AY  +G+  KA+  F +M  +GI PD V F A++ AC+HSGLVD+    F  
Sbjct: 576 VTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEK 635

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P +EHYAC+V +LSR+++IS+A EF+  MP+KP A +W ++L     SGD+E
Sbjct: 636 MKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDME 695

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
             + V   + E+ P++ G  I+ +N Y+   +WD+   +R+ +K+  + K PG SWIE  
Sbjct: 696 TAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVG 755

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F + D S  +SE IY  LE L  LM +EGY+
Sbjct: 756 KNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYI 791



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 42/408 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VS+N+MI GY +    EE   +F E L+    +PD +TV SVL+ACG   D+  
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ--FKPDLLTVSSVLRACGHLRDLSL 325

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              ++N+++++   ++  + N LI +YAKCG +  AR + + M  KD VS+++IISGY+ 
Sbjct: 326 AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +AM LF++M                          ++ E QA     + +T   +
Sbjct: 386 SGDLMEAMKLFKMM--------------------------MIMEEQA-----DHITYLML 414

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+ +  ++LK GK +H   +K+    ++ V+ A+ID YAK G +  + ++F        
Sbjct: 415 ISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDT 474

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +ISA    GD +  + +  +M  + + PD  TF   L  CA         +I   
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCC 534

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  ++G +  ++    ++ + S+   +  ++    +M  +     W  ++Y   + G+ E
Sbjct: 535 LL-RFGYESELQIGNALIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGE 592

Query: 361 --LGKFVCDHLFEIEPENTGNYIIMANLY--SQAGRWDEADRVREQMK 404
             L  F       I P++    + +A +Y  S +G  DE     E+MK
Sbjct: 593 KALETFADMEKSGIVPDSV---VFIAIIYACSHSGLVDEGLACFEKMK 637



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 177/357 (49%), Gaps = 37/357 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++  WNS+I  +S+ G + E    + ++  S V  PD  T  SV++AC    D   G  
Sbjct: 69  KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKV-SPDKYTFPSVIKACAGLFDAEMGDL 127

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V+  +++   + DL++ NAL+ MY++ G L  AR + DEM  +D VS++++ISGY  HG+
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A++++                                E++ S + P++ T+SS+   
Sbjct: 188 YEEALEIYH-------------------------------ELKNSWIVPDSFTVSSVLPA 216

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           F +   +K G+ +HG+A+K+  +  + V   ++  Y K      A+RVFD    R  + +
Sbjct: 217 FGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSY 276

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM-S 302
             +I  Y       ++V +F E L+   +PD +T ++VL AC H   +  A  I+N M  
Sbjct: 277 NTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLK 335

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             + ++ +V +   ++ V ++   +  A +  + M  K +   W +++ G   SGD+
Sbjct: 336 AGFVLESTVRNI--LIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDL 389



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 33/283 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+I+GYS  G+YEE   ++ E+ NS ++ PD  TV SVL A G    +  
Sbjct: 167 MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIV-PDSFTVSSVLPAFGNLLVVKQ 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F ++S +   + + N L+ MY K      AR + DEM  +D VSY+ +I GY+ 
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE+++ +F              +  L Q                   +P+ +T+SS+
Sbjct: 286 LEMVEESVRMF--------------LENLDQ------------------FKPDLLTVSSV 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                H  +L   K I+ Y +K  +     V   +ID YAK G +  A+ VF+  + +  
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
           + W +IIS Y   GD  +A+ LF  M+    Q D +T+  ++S
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLIS 416



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 109/220 (49%), Gaps = 7/220 (3%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN++I    +N      L+   +++ S V P+  T  S+    +   + + G  ++   +
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
              ++ +++V  A++D Y++ G L  A++VFD    R L+ W ++IS Y++HG   +A+ 
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           +++E+ N+ I PD  T ++VL A  +  LV K     +  + + G+   V     +V + 
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNL-LVVKQGQGLHGFALKSGVNSVVVVNNGLVAMY 252

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            + RR ++A     +M V+ S        Y   I G ++L
Sbjct: 253 LKFRRPTDARRVFDEMDVRDSVS------YNTMICGYLKL 286



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLII 242
            S  SNL   + IH   +    D + + +  +ID Y+       +  VF R    +++ +
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYL 73

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAM 301
           W +II A++ +G   +A+  + ++  + + PD  TF +V+ ACA  GL D +  D+    
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACA--GLFDAEMGDLVYEQ 131

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
               G +  +     +V + SR   ++ A +   +MPV+     W +L+ G S  G  E
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSHGYYE 189


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 247/417 (59%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           LRPD  ++ SVL+A  + S +  G ++H   + S + MD+ +  +LI MY+ CG +  AR
Sbjct: 118 LRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDAR 177

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            L D +  KD   ++A+++GY+  G ++ A  +F  M +  + +W  +I+G  Q NR   
Sbjct: 178 KLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHE 237

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            ++L R+MQ   V P+ + + ++ S  +    L+ G+ IH Y  K+   R + +  A+ID
Sbjct: 238 AIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALID 297

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YAK+G +  A  VF+  K +S+I W+ +I+A A HG   +A+ +F  M    ++P+ VT
Sbjct: 298 MYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVT 357

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           F A+LSAC+H G+VD     F+ M   Y I+P +EHY CM+ +L+RA  + EA + +  M
Sbjct: 358 FVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDM 417

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
           P + +A +WG+LL  ++   D EL +    HL ++EP N+GNY++++N Y+  G+W+E+ 
Sbjct: 418 PFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESG 477

Query: 398 RVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
            VR+ M+ +G+ K PG S IE +  +  F+A D S  +  +IY +L +++  ++  G
Sbjct: 478 TVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLKMAG 534



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 157/383 (40%), Gaps = 70/383 (18%)

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158
           +L    D+D +  S  I      G    A  +F     P L  +N  I  L + +     
Sbjct: 47  MLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINA 106

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           + L   ++  G+RP++ +I S+       S ++ G++IH   V +  D ++ VAT++I  
Sbjct: 107 IWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQM 166

Query: 219 YAKTGFLHGAQRVFD-------------------------------RFKGRSLIIWTAII 247
           Y+  GF+  A+++FD                                   R++I WT +I
Sbjct: 167 YSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLI 226

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           + YA      +A+ LF +M    ++PD +   AVLSACA  G ++    I N +  ++G+
Sbjct: 227 AGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIE-KHGL 285

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKM------------------------------ 337
              V  Y  ++ + +++  I  A E    M                              
Sbjct: 286 CRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLR 345

Query: 338 ----PVKPSAKVWGALLYGASISGDVELGKFVCDH---LFEIEPENTGNYIIMANLYSQA 390
                V+P+   + A+L   S  G V++G++  D    +++IEP+   +Y  M +L ++A
Sbjct: 346 MEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPK-IEHYGCMIDLLARA 404

Query: 391 GRWDEADRVREQMKESGLAKIPG 413
           G   EA ++   M     A I G
Sbjct: 405 GYLQEAQKLLHDMPFEANAMIWG 427



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 38/263 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+++SW ++IAGY+Q     E   LFR+M    V  PD + +++VL AC     +  
Sbjct: 214 MPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEV-EPDEIAMLAVLSACADLGALEL 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +HN++ +  +   + + NALI MYAK G++  A  + + M  K  +++S +I+   +
Sbjct: 273 GEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALAL 332

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+D+F                                 M+ + VRPN VT  +I
Sbjct: 333 HGLGGEAIDMF-------------------------------LRMEKAKVRPNEVTFVAI 361

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDR--FK 236
            S  SH   +  G+      +++ Y  +  I     +ID  A+ G+L  AQ++     F+
Sbjct: 362 LSACSHVGMVDVGRYYFD-QMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFE 420

Query: 237 GRSLIIWTAIISAYAAHGDASKA 259
             ++ IW ++++A   H DA  A
Sbjct: 421 ANAM-IWGSLLAASNTHRDAELA 442


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 242/438 (55%), Gaps = 33/438 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+  + +WN++++GY Q   +++   LFR M +  V +PD  T+  +L +C +   + F
Sbjct: 377 ISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNV-QPDRTTLAVILSSCSKLGILDF 435

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +   +  D+++ + L+ MY+KCG +  AR++ ++M+++D V           
Sbjct: 436 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV----------- 484

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++ ++   D  ++M+ +G+ P   + +S+
Sbjct: 485 --------------------CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASM 524

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  S++  G++IH   +K+ YD+N+YV +A+ID YAK G +  A+  FD    +++
Sbjct: 525 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNI 584

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVDKA   FN+
Sbjct: 585 VAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNS 644

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P  EHY C++  L RA R  E    + KMP K    +W  LL    +  + E
Sbjct: 645 MENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAE 704

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK   +HLF I+P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SWI+  
Sbjct: 705 LGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQK 764

Query: 421 GGLQSF-VAKDTSGDKSE 437
            G+++F VA D   D  E
Sbjct: 765 DGVRAFMVADDLGADGGE 782



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 190/402 (47%), Gaps = 50/402 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS--PVLRPDGVTVVSVLQACGQSSDI 58
           M++ + VS+ +M+ G +Q G  ++   LF  M  S  PV   D V+V SVL AC Q+   
Sbjct: 202 MARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPV---DPVSVSSVLGACAQACAT 258

Query: 59  VF--------GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110
            +        G  +H  V+      D  + N+LI MY KC  +D A  + + +     VS
Sbjct: 259 DYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVS 318

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMK----------------------------------- 135
           ++ +I+G+   G   KA+++  +M+                                   
Sbjct: 319 WNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKIS 378

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
           RP ++TWN ++SG  Q  +H+  ++L R MQ   V+P+  T++ I S  S    L  G++
Sbjct: 379 RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQ 438

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           +H  +V+     +++VA+ ++D Y+K G +  A+ +F++   R ++ W +IIS    H  
Sbjct: 439 VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSL 498

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             +A   F +M  NGI P   ++ +++++C+    +     I +A   + G   +V   +
Sbjct: 499 NKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQI-HAQVMKDGYDQNVYVGS 557

Query: 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            ++ + ++   + +A  F   M +K +   W  +++G + +G
Sbjct: 558 ALIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEMIHGYAQNG 598



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 171/369 (46%), Gaps = 33/369 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQG-GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M +R+ VSWN++I+  ++  G   E   ++  M    +L P   T+ SVL ACG  + + 
Sbjct: 100 MPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLL-PTHFTLASVLSACGGLAALG 158

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G   H   ++  +  + ++ NAL+GMY KCGS+  A  L   M+  +EVS++A++ G  
Sbjct: 159 DGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLA 218

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G ++ A+ LF  M R G+      +S ++         D               +++ 
Sbjct: 219 QTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDY--------------SVAR 264

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            F L         G+ IH   V+  +  + +V  ++ID Y K   +  A +VF+     +
Sbjct: 265 AFRL---------GQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVT 315

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I+ +   G  +KAV + + M   G +P+ VT++ +L++C  +  V  A  +F+
Sbjct: 316 IVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFD 375

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASIS 356
            +S     +PSV  +  ++    +  +  +  E   +M    V+P       +L   S  
Sbjct: 376 KIS-----RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKL 430

Query: 357 GDVELGKFV 365
           G ++ G+ V
Sbjct: 431 GILDFGRQV 439



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           D ++ N L+ +Y++ G   +A      +   ++ SY+A +S     G ++ A DL   M 
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 136 RPGLSTWNAVISGLVQN--NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
           R    +WN VIS L ++  +  EAV ++   M+A G+ P   T++S+ S     + L  G
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAV-EMYGRMRAEGLLPTHFTLASVLSACGGLAALGDG 160

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           +  HG AVK   D N +V  A++  Y K G +  A R+F      + + +TA++   A  
Sbjct: 161 RRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQT 220

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           G    A+ LF  M  +G+  DPV+ ++VL ACA +   D
Sbjct: 221 GSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATD 259


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 246/456 (53%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNSMI  Y Q    +E   +F++ML+  V +P  V+V+  L AC    D+  
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV-KPTDVSVMGALHACADLGDLER 355

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   +E  +  ++ + N+LI MY KC  +D A ++  ++  +  VS          
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS---------- 405

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I G  QN R    L+   +M++  V+P+  T  S+
Sbjct: 406 ---------------------WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSV 444

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S     K IHG  +++  D+N++V TA++D YAK G +  A+ +FD    R +
Sbjct: 445 ITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHV 504

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I  Y  HG    A+ LF EM    I+P+ VTF +V+SAC+HSGLV+     F  
Sbjct: 505 TTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYM 564

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I+ S++HY  MV +L RA R++EA +F+ +MPVKP+  V+GA+L    I  +V 
Sbjct: 565 MKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVN 624

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
             +   + LFE+ P++ G ++++AN+Y  A  W++  +VR  M   GL K PG S +E  
Sbjct: 625 FAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIK 684

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SF +  T+   S++IY  LE+L+  ++E GYV
Sbjct: 685 NEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYV 720



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 173/351 (49%), Gaps = 34/351 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V +++M+ G+++    ++    F  M    V  P       +L+ CG  +++  G E+H 
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDV-EPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +++S   +DL+    L  MYAKC  ++ AR + D M ++D VS                
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS---------------- 203

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                          WN +++G  QN      L++V+ M    ++P+ +TI S+    S 
Sbjct: 204 ---------------WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              +  GKEIHGYA+++ +D  + ++TA++D YAK G L  A+++FD    R+++ W ++
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I AY  + +  +A+ +F +ML+ G++P  V+    L ACA  G +++   I + +S + G
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI-HKLSVELG 367

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +  +V     ++ +  + + +  A     K+  +     W A++ G + +G
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS-WNAMILGFAQNG 417



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 201/440 (45%), Gaps = 85/440 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN+++AGYSQ G       + + M     L+P  +T+VSVL A      I  
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN-LKPSFITIVSVLPAVSALRLISV 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + + S     + I  AL+ MYAKCGSL+ AR L D M +++ VS++++I  Y+ 
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +   ++AM +FQ M                        LD        GV+P  V++   
Sbjct: 315 NENPKEAMLIFQKM------------------------LD-------EGVKPTDVSVMGA 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+ G+ IH  +V+   DRN+ V  ++I  Y K   +  A  +F + + R+L
Sbjct: 344 LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           + W A+I  +A +G    A++ F++M +  ++PD  T+ +V++A A              
Sbjct: 404 VSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGV 463

Query: 288 -------------SGLVDK---------AWDIFNAMSGQYGIQPSVEHYACMV---GVLS 322
                        + LVD          A  IF+ MS ++     V  +  M+   G   
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----VTTWNAMIDGYGTHG 518

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------ 376
             +   E  E + K  +KP+   + +++   S SG VE G   C   F +  EN      
Sbjct: 519 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG-LKC---FYMMKENYSIELS 574

Query: 377 TGNYIIMANLYSQAGRWDEA 396
             +Y  M +L  +AGR +EA
Sbjct: 575 MDHYGAMVDLLGRAGRLNEA 594



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 148/347 (42%), Gaps = 41/347 (11%)

Query: 89  KCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNA 144
           +C SL   R +L  +      ++    + ++S +  +G V++A  +F+ +       ++ 
Sbjct: 46  RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           ++ G  + +  +  L     M+   V P     + +  +    + L+ GKEIHG  VK+ 
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
           +  +++  T + + YAK   ++ A++VFDR   R L+ W  I++ Y+ +G A  A+ +  
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLV---------------DKAWDIFNAMSGQYG--- 306
            M    ++P  +T  +VL A +   L+               D   +I  A+   Y    
Sbjct: 226 SMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG 285

Query: 307 ------------IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPS-AKVWGALL 350
                       ++ +V  +  M+    +     EA     KM    VKP+   V GAL 
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
             A + GD+E G+F+  H   +E     N  ++ +L S   +  E D
Sbjct: 346 ACADL-GDLERGRFI--HKLSVELGLDRNVSVVNSLISMYCKCKEVD 389



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L    S+LK  ++I     KN   +  +  T ++  + + G +  A RVF+    +  ++
Sbjct: 43  LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           +  ++  +A   D  KA+  F  M  + ++P    FT +L  C     +    +I + + 
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEI-HGLL 161

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG----D 358
            + G    +     +  + ++ R+++EA +   +MP +     W  ++ G S +G     
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAGYSQNGMARMA 220

Query: 359 VELGKFVCD 367
           +E+ K +C+
Sbjct: 221 LEMVKSMCE 229


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 250/468 (53%), Gaps = 42/468 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D+VSWNS+IA Y Q          F +M LN    +PD +T+VS+     QS D      
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG--FQPDLLTLVSLASIVAQSRDCKNSRS 438

Query: 64  VHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           VH F++     M D+ I NA++ MYAK G LD A  + + +  KD +S            
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVIS------------ 486

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISSIF 181
                              WN +I+G  QN      +++ + M+    + PN  T  SI 
Sbjct: 487 -------------------WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
             ++H   L+ G  IHG  +K     +++VAT +ID Y K G L  A  +F +    S +
Sbjct: 528 PAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W AIIS +  HG A K + LF EML+ G++PD VTF ++LSAC+HSG V++    F  M
Sbjct: 588 TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM 647

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI+PS++HY CMV +L RA  +  A  F+  MP++P A +WGALL    I G++EL
Sbjct: 648 Q-EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIEL 706

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           GKF  D LFE++ +N G Y++++N+Y+  G+W+  D+VR   +E GL K PG S IE + 
Sbjct: 707 GKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNR 766

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  F   + S  K ++IY  L  L   M+  GY+     +L +VEE+
Sbjct: 767 KVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED 814



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 200/412 (48%), Gaps = 39/412 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN+MI+G  Q G   +   +  EM    + + + VTVVS+L  C Q  DI  
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI-KMNFVTVVSILPVCPQLGDIST 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            M +H +VI+  ++ DL++ NALI MYAK G+L+ AR    +M   D VS+++II+ Y  
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE- 393

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN+          +MQ +G +P+ +T+ S+
Sbjct: 394 ------------------------------QNDDPVTAHGFFVKMQLNGFQPDLLTLVSL 423

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S+ +   + K  + +HG+ ++  +   ++ +  A++D YAK G L  A +VF+    + 
Sbjct: 424 ASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKD 483

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +I W  +I+ YA +G AS+A+ ++  M     I P+  T+ ++L A AH G + +   I 
Sbjct: 484 VISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIH 543

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             +  +  +   V    C++ V  +  R+ +A     ++P + S+  W A++    I G 
Sbjct: 544 GRVI-KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGH 601

Query: 359 VELG-KFVCDHLFE-IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            E   K   + L E ++P++   ++ + +  S +G  +E       M+E G+
Sbjct: 602 AEKTLKLFGEMLDEGVKPDHV-TFVSLLSACSHSGFVEEGKWCFRLMQEYGI 652



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 198/423 (46%), Gaps = 63/423 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+ +WNSMI+ Y   G + E    F ++L    +RPD  T   VL+ACG   D   
Sbjct: 177 IPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD--- 233

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +  +   + ++++  +LI MY++ G    AR+L D+M  +D  S++A+ISG + 
Sbjct: 234 GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+D                            VLD   EM+  G++ N VT+ SI
Sbjct: 294 NGNAAQALD----------------------------VLD---EMRLEGIKMNFVTVVSI 322

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +     ++     IH Y +K+  + +++V+ A+I+ YAK G L  A++ F +     +
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           + W +II+AY  + D   A   F +M  NG QPD +T  ++ S  A           H  
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           ++ + W + + + G       V+ YA  +G+L  A ++ E         +      W  L
Sbjct: 443 IMRRGWLMEDVVIG----NAVVDMYA-KLGLLDSAHKVFEII-------LVKDVISWNTL 490

Query: 350 LYGASISG----DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           + G + +G     +E+ K + +   EI P N G ++ +   Y+  G   +  R+  ++ +
Sbjct: 491 ITGYAQNGLASEAIEVYKMM-EECKEIIP-NQGTWVSILPAYAHVGALQQGMRIHGRVIK 548

Query: 406 SGL 408
           + L
Sbjct: 549 TNL 551



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D++SWN++I GY+Q G   E   +++ M     + P+  T VS+L A      +  GM 
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMR 541

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI++++ +D+++   LI +Y KCG L  A +L  ++  +  V+++AIIS + +HG 
Sbjct: 542 IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGH 601

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD----LVREMQASGVRPN 173
            EK + LF  M   G+   +     L+    H   ++      R MQ  G++P+
Sbjct: 602 AEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPS 655



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 35/241 (14%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S+   F   +H  ++ +     ++I   L+ +YA  G +  +R   D++  KD       
Sbjct: 129 STKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKD------- 181

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREMQASGVRPN 173
                                   + TWN++IS  V N   HEA+    + +  S +RP+
Sbjct: 182 ------------------------VYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPD 217

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +         L  G+ IH +A K  +  N++VA ++I  Y++ GF   A+ +FD
Sbjct: 218 FYTFPPVLKACG---TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               R +  W A+IS    +G+A++A+ + +EM   GI+ + VT  ++L  C   G +  
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 294 A 294
           A
Sbjct: 335 A 335


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 260/469 (55%), Gaps = 14/469 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+VSWN++I GY+Q G  +E + LF E   SPV   D  T  +++    Q+  +  
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDE---SPV--QDVFTWTAMVSGYIQNRMVEE 299

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+ + + E +     W  NA++  Y +   ++ A+ L D M  ++  +++ +I+GY  
Sbjct: 300 ARELFDKMPERNEVS--W--NAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQ 355

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A +LF  M +    +W A+I+G  Q+      L L  +M+  G R N  + SS 
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ GK++HG  VK  Y+   +V  A++  Y K G +  A  +F    G+ +
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 475

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y+ HG    A+  F  M   G++PD  T  AVLSAC+H+GLVDK    F  
Sbjct: 476 VSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG+ P+ +HYACMV +L RA  + +A   +  MP +P A +WG LL  + + G+ E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   D +F +EPEN+G Y++++NLY+ +GRW +  ++R +M++ G+ K+PG SWIE  
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
               +F   D    + ++I+  LE L   M++ GY     V+L +VEEE
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE 704



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 21/327 (6%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N +I  Y + G  + AR L DEM ++D VS++ +I GY+ +  + KA +LF++M    + 
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN ++SG  QN      +D  R +       N V+ +++ S +   S +    E     
Sbjct: 159 SWNTMLSGYAQN----GCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKM----EEACML 210

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
            K+R +  +     ++  + K   +  A++ FD    R ++ W  II+ YA  G   +A 
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            LF+E   + +Q D  T+TA++S    + +V++A ++F+ M  +  +      +  M+  
Sbjct: 271 QLFDE---SPVQ-DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAG 321

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
             +  R+  A E    MP + +   W  ++ G +  G +   K + D + + +P    ++
Sbjct: 322 YVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV---SW 377

Query: 381 IIMANLYSQAGRWDEADRVREQMKESG 407
             M   YSQ+G   EA R+  QM+  G
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREG 404



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 156/357 (43%), Gaps = 58/357 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +   VS+N MI+GY + G +E  + LF EM       P+   V   +   G   +   
Sbjct: 90  MPRWSSVSYNGMISGYLRNGEFELARKLFDEM-------PERDLVSWNVMIKGYVRNRNL 142

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G     F I     +  W  N ++  YA+ G +D AR++ D M +K++VS++A++S Y+ 
Sbjct: 143 GKARELFEIMPERDVCSW--NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +  +E+A  LF+  +   L +WN ++ G V+  +          M               
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV------------- 247

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                                     R++     II  YA++G +  A+++FD    + +
Sbjct: 248 --------------------------RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV 281

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WTA++S Y  +    +A  LF++M     + + V++ A+L+       ++ A ++F+ 
Sbjct: 282 FTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEMAKELFDV 337

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           M  +     +V  +  M+   ++  +ISEA     KMP K     W A++ G S SG
Sbjct: 338 MPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSG 388



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 138/327 (42%), Gaps = 46/327 (14%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D D   ++  IS YM  G   +A+ +F+ M R    ++N +ISG ++N   E    L  E
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M      P    +S    +  +  N   GK    + +    +R++     ++  YA+ G 
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERDVCSWNTMLSGYAQNGC 172

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQP 273
           +  A+ VFDR   ++ + W A++SAY  +    +A  LF           N +L   ++ 
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232

Query: 274 ----------------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
                           D V++  +++  A SG +D+A  +F+    Q      V  +  M
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-----DVFTWTAM 287

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-EN 376
           V    + R + EA E   KMP +     W A+L G      +E+ K     LF++ P  N
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNEVS-WNAMLAGYVQGERMEMAK----ELFDVMPCRN 342

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQM 403
              +  M   Y+Q G+  EA  + ++M
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKM 369


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 260/470 (55%), Gaps = 38/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D++ W+ MIA Y+Q    +E   LF  M  + V+ P+  T  SVLQAC  S  +  
Sbjct: 298 MPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVV-PNNFTFASVLQACASSVSLDL 356

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ V++  +  ++++ NA++ +YAKCG ++ +  L +E+ D+++V+++ II GY+ 
Sbjct: 357 GKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQ 416

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E+AM+LF  M                          L  +MQ     P  VT SS+
Sbjct: 417 LGDGERAMNLFTHM--------------------------LEHDMQ-----PTEVTYSSV 445

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L+ G +IH   +K  Y+++  VA ++ID YAK G ++ A+  FD+   R  
Sbjct: 446 LRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDE 505

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  Y+ HG + +A++LF+ M +   +P+ +TF  VLSAC+++GL+ K    F +
Sbjct: 506 VSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFES 565

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  Y I+P +EHY CMV +L R  R  EA + + ++  +PS  VW ALL    I   V+
Sbjct: 566 MSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVD 625

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+    H+ E+EP +   +++++N+Y+ AGRWD    VR+ M++  + K PG SW+E  
Sbjct: 626 LGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQ 685

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           G +  F   DTS    + I  +LE L    R+ GY      VLLD  ++E
Sbjct: 686 GVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDE 735



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 36/355 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW  M+A Y++  FYEE   LF +M      +P+  T+   L++C        G  
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQM-RIMGYKPNNFTISGALKSCLGLEAFNVGKS 258

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH   ++     DL++  AL+ +YAK G          E+ D                  
Sbjct: 259 VHGCALKGCYDHDLFVGIALLELYAKSG----------EIID------------------ 290

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A  LF+ M +  L  W+ +I+   Q++R +  LDL   M+ + V PN  T +S+   
Sbjct: 291 ---AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQA 347

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   +L  GK+IH   +K   + N++V+ AI+D YAK G +  + ++F+    R+ + W
Sbjct: 348 CASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTW 407

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMS 302
             II  Y   GD  +A++LF  ML + +QP  VT+++VL A A    ++    I +  + 
Sbjct: 408 NTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIK 467

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             Y     V +   ++ + ++  RI++A     KM  +     W A++ G S+ G
Sbjct: 468 TMYNKDTVVANS--LIDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHG 519



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 171/391 (43%), Gaps = 39/391 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF---- 60
           D+ + N ++  Y Q    ++   LF EM       P   T+  V  A G S D  F    
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEM-------PQTNTISFVTLAQGYSRDHQFHQAL 121

Query: 61  ---------GMEVHNFVIESHIK----MDL-WICNALIGMYAKCGSLDYARALLDEMSDK 106
                    G EV+ FV  + +K    MDL  +C  L     K G               
Sbjct: 122 HFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGH------------HA 169

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D    +A+I  Y V G V+ A  +F  +    + +W  +++   +N  +E  L L  +M+
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G +PN  TIS              GK +HG A+K  YD +++V  A+++ YAK+G + 
Sbjct: 230 IMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEII 289

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            AQR+F+      LI W+ +I+ YA    + +A+ LF  M    + P+  TF +VL ACA
Sbjct: 290 DAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
            S  +D    I + +  ++G+  +V     ++ V ++   I  + +   ++P +     W
Sbjct: 350 SSVSLDLGKQIHSCVL-KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDV-TW 407

Query: 347 GALLYGASISGDVELGKFVCDHLFEIEPENT 377
             ++ G    GD E    +  H+ E + + T
Sbjct: 408 NTIIVGYVQLGDGERAMNLFTHMLEHDMQPT 438



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 31/230 (13%)

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +D + G  +H  +++    +DL+  N L+  Y +  SL  A  L DEM   + +S+  + 
Sbjct: 49  ADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLA 108

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            GY                                ++++    L  +  +   G   N  
Sbjct: 109 QGY-------------------------------SRDHQFHQALHFILRIFKEGHEVNPF 137

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
             +++  L            +H    K  +  + +V TA+ID Y+  G +  A+ VFD  
Sbjct: 138 VFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDI 197

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             + ++ WT +++ YA +    +++ LFN+M   G +P+  T +  L +C
Sbjct: 198 CCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 40/234 (17%)

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GK +H + +K     +++    +++ Y ++  L  A ++FD     + I +  +   Y+
Sbjct: 53  AGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
                 +A+     +   G + +P  FT +L       L    W +              
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTL-------------- 158

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
             +AC                 V K+     A V  AL+   S+ G+V++ + V D   +
Sbjct: 159 --HAC-----------------VYKLGHHADAFVGTALIDAYSVRGNVDVARHVFD---D 196

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
           I  ++  ++  M   Y++   ++E+ ++  QM+  G    P    I  SG L+S
Sbjct: 197 ICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYK--PNNFTI--SGALKS 246


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 264/460 (57%), Gaps = 38/460 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V+WN+M++ + Q G  +E   L   M     +  D VT+ ++L           
Sbjct: 383 MLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFM-VDSVTLTALLSLASNLRSQEI 441

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS--DKDEVSYSAIISGY 118
           G + H ++I   I+ +  + + LI MYAK G +  A+ L ++ S  D+DE +++A+I+GY
Sbjct: 442 GKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGY 500

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G  E+   +F                               R+M    VRPNAVT++
Sbjct: 501 TQNGLSEEGFAVF-------------------------------RKMIEQNVRPNAVTLA 529

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    +    +  GK+IHG+A++   +RN++V TA++D Y+K+G +  A+ VF     +
Sbjct: 530 SILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEK 589

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + + +T +IS+Y  HG   +A+SLF+ ML +GI+PD VTF A+LSAC+++GLVD+   IF
Sbjct: 590 NSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIF 649

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISG 357
            +M  +Y IQPS EHY C+  +L R  R+ EA EFV  +  + +   +WG+LL    I G
Sbjct: 650 QSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHG 709

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
           + ELGK V + L E+E  +  TG +++++N+Y+  G WD  DRVR++M++ GL K  G S
Sbjct: 710 EFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCS 769

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           W+E +G +  F+++D    +  +IY +LE+L   M++ GY
Sbjct: 770 WVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGY 809



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 145/291 (49%), Gaps = 34/291 (11%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+   WN+MI GY Q     E   LF +++ S     D VT +S L A  Q   +  G 
Sbjct: 283 ERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGR 342

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H ++++S   + + I NA+I MY++CGS+  +  +   M ++D V+++ ++S +    
Sbjct: 343 QLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAF---- 398

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                                      VQN   +  L LV  MQ  G   ++VT++++ S
Sbjct: 399 ---------------------------VQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLS 431

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK--GRSL 240
           L S+  + + GK+ H Y +++       + + +ID YAK+G +  AQ++F++     R  
Sbjct: 432 LASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDE 490

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
             W A+I+ Y  +G + +  ++F +M+   ++P+ VT  ++L AC   G +
Sbjct: 491 ATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 41/289 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--- 57
           M KR++V+WN+MI+ Y +     E   +FR M+   + RP  V+ V+V  A  + SD   
Sbjct: 178 MRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGI-RPTPVSFVNVFPAVWRMSDYDN 236

Query: 58  --IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +++G+ V    + S    D ++ ++ I MYA+ G +D+AR + D   +++   ++ +I
Sbjct: 237 ANVLYGLVVK---LGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 116 SGYMVHGFVEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
            GY+ +    +A+DLF QVM+                    + VLD              
Sbjct: 294 GGYVQNNCPIEAIDLFVQVME------------------SEQFVLD-------------D 322

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT  S  +  S    L+ G+++H Y +K+     + +  AII  Y++ G +  + +VF  
Sbjct: 323 VTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSN 382

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
              R ++ W  ++SA+  +G   + + L   M   G   D VT TA+LS
Sbjct: 383 MLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLS 431



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 21/287 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +   V WN++I G+       +    +  M  SP  + D  T  S L+AC Q+  +  
Sbjct: 63  IPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKL 122

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V+ SH      + N+L+ MY+ C +               EV Y      +  
Sbjct: 123 GKALHCHVLRSHFGSSRIVYNSLLNMYSTCLT---------------EVPYLGTAYDFNN 167

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V +   +F  M++  +  WN +IS  V+  R      + R M   G+RP  V+  ++
Sbjct: 168 CDLVRR---VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224

Query: 181 FSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           F      S+      ++G  VK  + +  + +V ++ I  YA+ G +  A+ +FD    R
Sbjct: 225 FPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLER 284

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSA 284
           +  +W  +I  Y  +    +A+ LF +++ +     D VTF + L+A
Sbjct: 285 NTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTA 331



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISS 179
            G   +A+ LF  + RP    WN +I G + NN   +A+L   R   +   + ++ T SS
Sbjct: 50  QGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSS 109

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA----KTGFLHGA------- 228
                +   +LK GK +H + +++ +  +  V  ++++ Y+    +  +L  A       
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169

Query: 229 --QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
             +RVFD  + R+++ W  +IS Y       +A  +F  M+  GI+P PV+F  V  A
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 153/446 (34%), Positives = 249/446 (55%), Gaps = 1/446 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNSMI GY+Q G   E  +LF  M    +L  D  T+VS+L AC    ++ F
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLL-ADEFTLVSLLFACSAEGNLEF 229

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+ ++    ++DL + NAL+ MY KCG L  A    D M  K+ VS+++++     
Sbjct: 230 GKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAK 289

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              ++ A D F+ +    + +WNA+IS  VQ  R    LDL   M+  G+ P+  T++++
Sbjct: 290 RASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  GK IH     N ++  + +  +++D YA+ G +  A  +F     +++
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNV 409

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W AII A A HG A  A+  F  M+++   PD +TF A+LSAC H GL++     F A
Sbjct: 410 ISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQA 469

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P VEHYACMV +L R  ++++A + +  MP++P   VWGALL    I G ++
Sbjct: 470 MRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQ 529

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK V   L E+E  + G +++++N+  +  +W++  R+R+ M+E G+ K  G S IE +
Sbjct: 530 IGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
             +    A+    + S+ +Y+  +RL
Sbjct: 590 SNIHESGAEGIGHESSDDMYVGDDRL 615



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 167/361 (46%), Gaps = 13/361 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   +NS+I  Y      +E   L R M+   +L P+  T+  +L+AC +       M  
Sbjct: 74  DRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL-PNEFTLPFLLKACARVQAWEHVMVT 132

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++      +++ NAL+  YA  GSL  +R   DEM D++ VS++++I+GY   G  
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNT 192

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSI 180
            +A  LF+ M+R GL      +  L+     E  L+  +     +   G R + +  +++
Sbjct: 193 REACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANAL 252

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             ++      K G  +  +   +    +N    T+++   AK   +  A+  F++   +S
Sbjct: 253 VDMYG-----KCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKS 307

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I W A+IS Y   G   +A+ L+N M   G+ PD  T  AVLSAC   G +     I +
Sbjct: 308 IISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHD 367

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +   +   P V  +  ++ + +R  ++  A    S+MP K +   W A++   ++ G  
Sbjct: 368 CIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIGALAMHGRA 425

Query: 360 E 360
           +
Sbjct: 426 Q 426



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 17/329 (5%)

Query: 89  KCGSLDYARAL--------LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           +CGS+     L        +D+++ +   SY A+ +G    G V  A  LF  +  P   
Sbjct: 21  RCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAG----GGVWYARQLFDRIPDPDRF 76

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
            +N++I     ++  +  L L+R M   G+ PN  T+  +    +     +     HG  
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK  +   ++V  A++ +YA  G L  ++R FD    R+++ W ++I+ YA  G+  +A 
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           SLF  M   G+  D  T  ++L AC+  G ++    + + +  + G +  +     +V +
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCRIDLILANALVDM 255

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
             +   +  A      MP K +A  W ++L   +    ++  +   D   +I  ++  ++
Sbjct: 256 YGKCGDLLMAHTCFDMMPFK-NAVSWTSMLCALAKRASIDAAR---DWFEQIPEKSIISW 311

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLA 409
             M + Y Q GR+ EA  +  +MK  GLA
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLA 340


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 256/473 (54%), Gaps = 40/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+++SWN+MIAGY+  GF E+   LF++M        D  T  S L+AC     I  
Sbjct: 134 MPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGF-LDEFTFTSTLKACSDLGAIKE 192

Query: 61  GMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           G ++H F+I       ++  +  ALI +Y KCG L  AR +   + +K  +S        
Sbjct: 193 GNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVIS-------- 244

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  W A+I G  Q       ++L R+++ S ++ +   +S
Sbjct: 245 -----------------------WTALILGYAQEGNLAESMELFRQLRESSIQVDGFILS 281

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+  +F+ F+ ++ GK++H +A+K     +I V  +I+D Y K G ++ A+R+F     R
Sbjct: 282 SMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR 341

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++I WT +I+ Y  HG   +A+ LF+EM  +  +PD VT+ AVL  C+HSGLV+K  + F
Sbjct: 342 NVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYF 401

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + +   +GI+  VEHYACMV +L RA R+ EA   V  MP++ +  +W  LL    + GD
Sbjct: 402 SRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGD 461

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +ELGK V   L  ++ EN  NY++M+N+Y+ AG W E +R+RE +K   L K  GRSW+E
Sbjct: 462 LELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVE 521

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE-GYVL-----LDEVEEES 465
               +  F   D +   +E+I+ IL+ +   M+EE GYV      L +VEEES
Sbjct: 522 IDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEES 574



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 198/442 (44%), Gaps = 73/442 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR++VSW +++ G+ Q G   E   LF +M  S V +P+  T  + L+ACG  + +  
Sbjct: 33  MLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGV-KPNDFTFSTNLKACGLLNGLDI 91

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  +++   M   + N++I MY+KCG ++ A  + + M  ++ +S++A+I+GY V
Sbjct: 92  GRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTV 151

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF EKA+ LFQ                               +MQ  G   +  T +S 
Sbjct: 152 AGFCEKALVLFQ-------------------------------KMQEVGGFLDEFTFTST 180

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
               S    +K G +IH + +     Y  N  VA A+ID Y K G L  A+RVF   + +
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +I WTA+I  YA  G+ ++++ LF ++  + IQ D    ++++   A   LV +   + 
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMH 300

Query: 299 N-AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK----------------- 340
             A+    G+  SV +   ++ +  +   I+EA    S+MP +                 
Sbjct: 301 AFAIKVPSGVDISVCN--SILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGL 358

Query: 341 -----------------PSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYI 381
                            P    + A+L G S SG VE G+     L           +Y 
Sbjct: 359 GKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYA 418

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            M +L  +AGR  EA  + + M
Sbjct: 419 CMVDLLGRAGRLKEAKNLVDSM 440



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 99/222 (44%), Gaps = 31/222 (13%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           DL + N LI MY KCG L  A  + D M  ++ VS                         
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVS------------------------- 40

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
                 W A++ G +QN      L L  +M  SGV+PN  T S+        + L  G++
Sbjct: 41  ------WTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQ 94

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           IH   VK  +D    V  +IID Y+K G ++ A  +F+    R+LI W A+I+ Y   G 
Sbjct: 95  IHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGF 154

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
             KA+ LF +M   G   D  TFT+ L AC+  G + +   I
Sbjct: 155 CEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQI 196



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 24/164 (14%)

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           ++ ++  +I  Y K G L  A  VFDR   R+++ WTA++  +  +G+  +++ LF++M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 268 NNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            +G++P+  TF+  L AC            H   V   +D+ N +               
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNS------------ 113

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           ++ + S+  RI+EA      MPV+     W A++ G +++G  E
Sbjct: 114 IIDMYSKCGRINEAACMFEVMPVRNLIS-WNAMIAGYTVAGFCE 156


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 250/457 (54%), Gaps = 32/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+VSWN+M+  Y + G   E   + R+M+    + P+ VT+  VL AC    D+V 
Sbjct: 189 IPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVL 248

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  +   + ++ D  + +AL+GMY KCG +  AR + D + DKD V+          
Sbjct: 249 GRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVA---------- 298

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  QN      + L   M+ +GV P+ +T++ +
Sbjct: 299 ---------------------WNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGV 337

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+ G E+ GYA       N+YV TA++D YAK G L  A  VF + + +++
Sbjct: 338 LSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNV 397

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W A+I   A +G   +A+  F  M N +G++PD +TF  VLSAC H+GLV      FN
Sbjct: 398 ASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFN 457

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ ++ I P +EHY+CMV  L+R+  + E  +F+ K+P K  A + GALL       +V
Sbjct: 458 SLTSEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNV 517

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+ V + + ++EP N+ NY++ + +Y+ +GR D++ ++R  M+E G+ K PG SW+E 
Sbjct: 518 EIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKTPGCSWVEI 577

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           SG +  F A D     ++ +Y +L+ L+  MR EGYV
Sbjct: 578 SGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 614



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           N +D  ++   ++I  Y+       A++VF+    R ++ W A++ AY   G   +   +
Sbjct: 160 NSHDHTVH---SLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRM 216

Query: 263 FNEMLNNG-IQPDPVTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
             +M+ +G + P+ VT   VL+AC   G LV   W      S   G++      + +VG+
Sbjct: 217 LRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRW--VEEWSKSAGMETDSLVGSALVGM 274

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             +   I+EA      + +      W A++ G + +G
Sbjct: 275 YEKCGEIAEARRVFDSI-IDKDVVAWNAMITGYAQNG 310


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 266/520 (51%), Gaps = 65/520 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM---------------------------- 32
           M++RD  SWN+M++ Y++ G  E+ + +F  M                            
Sbjct: 84  MTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVF 143

Query: 33  --LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
             +    L+P   T VSVL AC Q  D+  G ++H  +I  ++  ++++CNAL  +YA+C
Sbjct: 144 LRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARC 203

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS---------- 140
           G +D AR L D M  ++ V+++ +ISGY+ +   EK +DLF  M+   L           
Sbjct: 204 GEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVL 263

Query: 141 -------------------------TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                                     W  +I G  QN + E  L L  EM     RP+  
Sbjct: 264 GAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGY 323

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           TISS+ S  +  ++L  G+ +HG A     + ++ V++A++D Y K G    A  +F   
Sbjct: 324 TISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTM 383

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + R+++ W ++I  YA +G   +A+SL+  ML   ++PD VTF  VLSAC H+GLV++  
Sbjct: 384 QTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGK 443

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           + F +MS Q+G++P+ +HYACMV +  R+  + +A + +S M  +P++ +W  +L    +
Sbjct: 444 EYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVM 503

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            GD++ G+     L E+ P N   YI+++N+Y+  GRW +   +R  MK   + K    S
Sbjct: 504 KGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYS 563

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           WIE    +  FVA D +   ++ I++ L RL+  ++E G+
Sbjct: 564 WIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGF 603



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 130/236 (55%), Gaps = 6/236 (2%)

Query: 69  IESHIKM------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++SH+ +      D +I N L+ +YAK G + +AR L DEM+ +D  S++A++S Y   G
Sbjct: 44  LKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSG 103

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            VE    +F  M      ++N VISG   N R    L +   MQ  G++P   T  S+ +
Sbjct: 104 LVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLN 163

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   +L+ GK+IHG  +      N++V  A+ D YA+ G +  A+R+FDR   R+++ 
Sbjct: 164 ACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVT 223

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           W  +IS Y  +    K + LF+EM  + ++PD VT ++VL A   +G +D+A  +F
Sbjct: 224 WNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVF 279



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 15/174 (8%)

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
           FK     I   +++ YA  G+ S A  LF+EM     Q D  ++ A+LS  A SGLV+  
Sbjct: 53  FKPNDTFIHNRLLNLYAKSGEISHARKLFDEM----TQRDNFSWNAMLSLYAKSGLVEDL 108

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV--SKMPVKPSAKVWGALLYG 352
             IF+ M      + SV +   + G     R       F+   K  +KP+     ++L  
Sbjct: 109 RVIFDNMPS----RDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNA 164

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQM 403
            +   D+  GK +  H   I     GN  +   + +LY++ G  D+A R+ ++M
Sbjct: 165 CTQLLDLRRGKQI--HGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRM 216


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 261/464 (56%), Gaps = 33/464 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS +DI+SW++M+A Y+  G   +   LF EML+  + +P+ VTVVSVL+AC   S++  
Sbjct: 405 MSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRI-KPNWVTVVSVLRACACISNLEE 463

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM++H   +    +M+  +  AL+ MY KC S + A  L + M  KD ++++ + SGY  
Sbjct: 464 GMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYAD 523

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V ++M +F                               R M +SG RP+A+ +  I
Sbjct: 524 NGMVHESMWVF-------------------------------RNMLSSGTRPDAIALVKI 552

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S    L+    +H + +KN ++ N ++  ++I+ YAK   +  A +VF     + +
Sbjct: 553 LTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDV 612

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + W++II+AY  HG   +A+ LF +M N+   +P+ VTF ++LSAC+HSGL+ +  ++F+
Sbjct: 613 VTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFD 672

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M  +Y ++P+ EHYA MV +L R   +  A + ++ MP++    +WGALL    I  ++
Sbjct: 673 IMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNI 732

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ++G+    +LF ++P + G YI+++N+YS    W  A ++R  +KE  L KI G+S +E 
Sbjct: 733 KMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVEL 792

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
              ++SF+A D   D+S+ IY IL +L   MRE  +    ++EE
Sbjct: 793 KNEVRSFIAGDRIHDESDHIYEILTKLHAKMREVAFDPQVQIEE 836



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 171/364 (46%), Gaps = 35/364 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+V W S+I+GY Q G  E   A F  M+ S  + PD VT+VSV  AC Q S+   G 
Sbjct: 305 KPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGR 364

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH FV    +   L + N+L+ +Y K GS+  A  L  EMSDKD +S+S +++ Y    
Sbjct: 365 SVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACY---- 420

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                                        N     VLDL  EM    ++PN VT+ S+  
Sbjct: 421 ---------------------------ADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLR 453

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  SNL+ G +IH  AV   ++    V+TA++D Y K      A  +F+R   + +I 
Sbjct: 454 ACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIA 513

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  + S YA +G   +++ +F  ML++G +PD +    +L+  +  G++ +A    +A  
Sbjct: 514 WAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQA-VCLHAFV 572

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGDVE 360
            + G + +    A ++ V ++   I +A +    M  K     W +++  YG    G+  
Sbjct: 573 IKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQGEEA 631

Query: 361 LGKF 364
           L  F
Sbjct: 632 LKLF 635



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 170/361 (47%), Gaps = 36/361 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL----RPDGVTVVSVLQACGQSSDIV 59
           R +  WN+++  Y   G + E  +LFR+M N   +    RPD  +V   L++C     ++
Sbjct: 200 RTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLL 259

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G  +H F+ +  I  D+++ +ALI +Y KCG ++ A  +  E    D V +++IISGY 
Sbjct: 260 LGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYE 319

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G  E A+  F                               R + +  V P+ VT+ S
Sbjct: 320 QSGSPELALAFFS------------------------------RMVVSEKVSPDPVTLVS 349

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S  +  SN K G+ +HG+  +   D  + +A +++  Y KTG +  A  +F     + 
Sbjct: 350 VASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKD 409

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I W+ +++ YA +G  +  + LFNEML+  I+P+ VT  +VL ACA    +++   I +
Sbjct: 410 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKI-H 468

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            ++  YG +        ++ +  +     +A +  ++MP K     W  L  G + +G V
Sbjct: 469 ELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMP-KKDVIAWAVLFSGYADNGMV 527

Query: 360 E 360
            
Sbjct: 528 H 528



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 30/244 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           +V +L+ C     I    ++H+  +++ +  D +I   L  +YA+  S+ +A  L  E  
Sbjct: 142 LVKLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETP 198

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +    ++A++  Y   G   + + LF+ M        N V S  ++             
Sbjct: 199 HRTVYLWNALLRSYCFEGEWVETLSLFRQM--------NNVSSVSIEE------------ 238

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
                 RP+  ++S      +    L  GK IHG+  K R D +++V +A+ID Y K G 
Sbjct: 239 ------RPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQ 292

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLS 283
           ++ A +VF  +    +++WT+IIS Y   G    A++ F+ M ++  + PDPVT  +V S
Sbjct: 293 MNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVAS 352

Query: 284 ACAH 287
           ACA 
Sbjct: 353 ACAQ 356



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           ++H   +K     + ++ T +   YA+   +H A ++F     R++ +W A++ +Y   G
Sbjct: 157 QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEG 216

Query: 255 DASKAVSLFNEMLNNGI-----QPDPVTFTAVLSACA--HSGLVDKAWDIFNAMSGQYGI 307
           +  + +SLF +M N        +PD  + +  L +CA     L+ K   + +    +  I
Sbjct: 217 EWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGK---VIHGFLKKVRI 273

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
              +   + ++ + ++  ++++A +   + P KP   +W +++ G   SG  EL 
Sbjct: 274 DGDMFVGSALIDLYTKCGQMNDAVKVFMEYP-KPDVVLWTSIISGYEQSGSPELA 327


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 150/469 (31%), Positives = 252/469 (53%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++IA + Q G  EE   LF  ML    + PD  T  SVL+AC     +  
Sbjct: 439 MERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLR-MEPDQFTYGSVLKACSSQQALNS 497

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+HN +I+S + +D ++  ALI MY KCG ++ A+ + D +                 
Sbjct: 498 GMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRI----------------- 540

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         ++  + +WNA+I+G       E       EM    V+P+  T + +
Sbjct: 541 --------------EQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIV 586

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ +++  GK+IHG  +K     ++Y+ + ++D Y+K G +  +  VF++   +  
Sbjct: 587 LDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDF 646

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  YA HG   +A+  F  M    ++P+  TF ++L ACAH G +DK    FNA
Sbjct: 647 VTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNA 706

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YG++P +EHY+CM+ ++ R+ RISEA + + +MP +  A +W  LL    I G++E
Sbjct: 707 MLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIE 766

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   + + ++EPE++   I+++N+Y+ AG W +   +R+ M+ + L K PG SWIE  
Sbjct: 767 IAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVK 826

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F+  + +  + E+IY IL  LL  M+  GY+     L+DE  EE
Sbjct: 827 DEVHAFLVGNKTHPRYEEIYKILSVLLDEMKWIGYIPDIDFLIDEESEE 875



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 207/465 (44%), Gaps = 75/465 (16%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           KRD+VSWNSM++G+ Q G   +   +F +M  S  +  D  T   VL+AC    D   G+
Sbjct: 137 KRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGI 196

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH  ++      D+   +AL+ MYAKC  LD +  +  E+  K+ V             
Sbjct: 197 QVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWV------------- 243

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W+A+I+G VQN+ H   L+L +EMQ  G+  +    +S+F 
Sbjct: 244 ------------------CWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFR 285

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S LK G ++H +A+K  +  +I V TA +D YAK G L  AQR+F+     SL  
Sbjct: 286 SCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQC 345

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKAWDIFNAM 301
           + AII     +    +A+  F  +L +G+  + ++ +   SACA   G +D      +++
Sbjct: 346 YNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ--LHSL 403

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE- 360
           S +  ++ ++     ++ +  +   +SEA     +M  +  A  W A++     +G+ E 
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGNEEE 462

Query: 361 -LGKFVCDHLFEIEPE-----------------NTG----NYII-------------MAN 385
            L  F       +EP+                 N+G    N II             + +
Sbjct: 463 TLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALID 522

Query: 386 LYSQAGRWDEA----DRVREQMKESGLAKIPGRSWIECSGGLQSF 426
           +Y + G  +EA    DR+ +Q   S  A I G + ++ S    SF
Sbjct: 523 MYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSF 567



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 152/312 (48%), Gaps = 5/312 (1%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T   ++Q C   + +  G + H  +I S    D++I N L+ MY +C  L+YA  + ++M
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           S +D +SY+ +ISGY   G +  A + F    +  + +WN+++SG +QN      +D+  
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 164 EM-QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
           +M ++  V  +  T + +    S   +   G ++HG  V+  + +++   +A++D YAK 
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
             L  + ++F     ++ + W+AII+    + +    + LF EM   GI      + +V 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 283 SACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
            +CA    +     +  +A+   +G   +V      + + ++   +++A    + +P K 
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVG--TATLDMYAKCGSLADAQRIFNSLP-KH 341

Query: 342 SAKVWGALLYGA 353
           S + + A++ G 
Sbjct: 342 SLQCYNAIIVGC 353


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 274/477 (57%), Gaps = 17/477 (3%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VS+N+MI GY++    E    LF EM NS +L PD  T V++   C   ++   G +
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGIL-PDEFTFVALFSVCSVLNEPNVGKQ 233

Query: 64  VHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYMV 120
           +H  V ++   I  ++ + +A++ MYAKCG ++ A  +   M + K   ++S+++ GY  
Sbjct: 234 IHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYAR 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A  LF  M    + +W A+ISG  Q  +    L+L +EM+A G++P+ VT+ ++
Sbjct: 294 CGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAV 353

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +       GK + H Y     +++N  +  A++D YAK G +  A  +F R  G++
Sbjct: 354 LSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV-GKN 412

Query: 240 L---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
           +    ++ ++I+  A HG    A+++F E+++ G++PD VTF  VL AC HSGL+++   
Sbjct: 413 MKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKK 472

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F +M   YGI+P +EHY CMV +L R   + EA + V KMP + ++ +W ALL      
Sbjct: 473 LFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTH 532

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+V++G+     L E+E ++   Y++++N+ + A +W+EA +VR+ M++ G+ K PG S+
Sbjct: 533 GNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSY 592

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEES 465
           IE  G +  FVA D S  + ++I L+L+ +   ++  GYV         +DE E+ES
Sbjct: 593 IELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKES 649



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 159/335 (47%), Gaps = 69/335 (20%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN+MI GYS+     E   L+  M+   +  P+  T   +L +C + S +  G EV
Sbjct: 74  NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEV 133

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ +I+   + DL++ NALI +Y+  G+L+ AR L DE   +D VSY+ +I GY      
Sbjct: 134 HSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGY------ 187

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                     + N+ E+ L L  EMQ SG+ P+  T  ++FS+ 
Sbjct: 188 -------------------------AEVNQPESALCLFGEMQNSGILPDEFTFVALFSVC 222

Query: 185 SHFSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRV----------- 231
           S  +    GK+IH    KN    D NI + +AI+D YAK G ++ A+RV           
Sbjct: 223 SVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAA 282

Query: 232 ---------------------FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
                                F+    R +I WTA+IS Y+  G  S+A+ LF EM   G
Sbjct: 283 AWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALG 342

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           I+PD VT  AVLSACA  G    A+D+   +  QY
Sbjct: 343 IKPDEVTLVAVLSACARLG----AFDLGKRLYHQY 373



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 5/281 (1%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP-NAVTISSIFSLFSHFS 188
           LF  +  P L  WN +I G  +++     + L   M A G+ P N  T   + +  +  S
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G E+H + +K+ ++ +++V  A+I  Y+  G L+ A+ +FD    R L+ +  +I 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-NAMSGQYGI 307
            YA       A+ LF EM N+GI PD  TF A+ S C+     +    I          I
Sbjct: 186 GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
             ++   + +V + ++   I+ A    S M    SA  W +++ G +  G++ + + + +
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           H+ E    +  ++  M + YSQAG+  EA  + ++M+  G+
Sbjct: 306 HMHE---RDVISWTAMISGYSQAGQCSEALELFKEMEALGI 343



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 127/263 (48%), Gaps = 43/263 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SW +MI+GYSQ G   E   LF+EM  +  ++PD VT+V+VL AC +      
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEM-EALGIKPDEVTLVAVLSACARLGAFDL 365

Query: 61  GMEVHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +++  IE+ +   +  +  A++ MYAKCGS+D A  +   +               M
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKN------------M 413

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             GFV  +M                 I+GL Q+   E  + + RE+ ++G++P+ VT   
Sbjct: 414 KTGFVFNSM-----------------IAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 456

Query: 180 IFSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           +     H   ++ GK++     + Y +K + +        ++D   + G L  A  +  +
Sbjct: 457 VLCACGHSGLIEEGKKLFESMFNAYGIKPQMEH----YGCMVDLLGRYGCLEEAYDLVQK 512

Query: 235 --FKGRSLIIWTAIISAYAAHGD 255
             F+  S +IW A++SA   HG+
Sbjct: 513 MPFEANS-VIWRALLSACRTHGN 534


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 250/453 (55%), Gaps = 5/453 (1%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           +WN+MI+GY   G ++E   L R+M    + + D +T  +++ AC        G ++H +
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGI-QFDDITYTTIISACANVGSFQMGKQMHAY 314

Query: 68  VIESHIKMDLWIC----NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           ++++ +  +   C    NALI +Y K   +D AR +   M  ++ ++++AI+SGY+  G 
Sbjct: 315 ILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E+A   F+ M    L T   +ISGL QN   +  L L ++M+  G  P     +   + 
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S    L+ G+++H   V   Y+ ++ V  A+I  YAK G +  A+ VF       L+ W
Sbjct: 435 CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            ++I+A   HG   KA+ LF++ML  G+ PD +TF  VL+AC+H+GLV+K    FN+M  
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            YGI P  +HYA MV +  RA   S A   +  MP KP A VW ALL G  I G+++LG 
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
              + LF++ P+N G Y++++N+Y+  GRW++  +VR+ M++  + K P  SWIE    +
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKV 674

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F+  D    +   +Y  LE+L   M++ GY+
Sbjct: 675 HVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYI 707



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 163/329 (49%), Gaps = 38/329 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVL----------QACG 53
           RD V +N+MI GY+  G       LFR M      RPD  T  SVL          Q CG
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDD-FRPDDFTFTSVLSALVLFVGNEQQCG 168

Query: 54  QSSDIVFGMEVHNFVIESHIK-MDLWICNALIGMYAK--------CGSLDYARALLDEMS 104
           Q         +H  V+++ +  +   + NAL+ +Y K        C ++  AR L DEM 
Sbjct: 169 Q---------MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMP 219

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +DE++++ +I+GY+ +  +  A ++F+ M     + WNA+ISG V     +  L L R+
Sbjct: 220 KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRK 279

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN----IYVATAIIDTYA 220
           M+  G++ + +T ++I S  ++  + + GK++H Y +KN  + N    + V+ A+I  Y 
Sbjct: 280 MRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYC 339

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K   +  A+++F     R++I W AI+S Y   G   +A S F EM    +    +T T 
Sbjct: 340 KNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL----LTLTV 395

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           ++S  A +G  D+   +F  M    G +P
Sbjct: 396 MISGLAQNGFGDEGLKLFKQMRLD-GFEP 423



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 176/412 (42%), Gaps = 60/412 (14%)

Query: 49  LQACGQSSDIVFGME--VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           LQ C       F +   VH  +I S  K      N L+ MY K  ++ YAR L +E+ + 
Sbjct: 18  LQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNP 77

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQ---VMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           D ++ + +I+ Y   G +E   ++F    +  R  +  +NA+I+G   N    + L+L R
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV-FYNAMITGYAHNGDGHSALELFR 136

Query: 164 EMQASGVRPNAVTISSIFSLFSHF-SNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAK 221
            M+    RP+  T +S+ S    F  N +   ++H   VK      +  V  A++  Y K
Sbjct: 137 AMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVK 196

Query: 222 TGFLHG--------AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN---- 269
                G        A+++FD    R  + WT +I+ Y  + D + A  +F  M+ N    
Sbjct: 197 RASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA 256

Query: 270 ---------------------------GIQPDPVTFTAVLSACAHSGLVD-----KAWDI 297
                                      GIQ D +T+T ++SACA+ G         A+ +
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYIL 316

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            N ++  +    SV +   ++ +  +  ++ EA +    MPV+ +   W A+L G   +G
Sbjct: 317 KNELNPNHSFCLSVSN--ALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVNAG 373

Query: 358 DVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +E  K      FE  P +N     +M +  +Q G  DE  ++ +QM+  G 
Sbjct: 374 RMEEAK----SFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 123/315 (39%), Gaps = 87/315 (27%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M  R+I++WN++++GY   G  EE K+ F EM   PV                       
Sbjct: 354 MPVRNIITWNAILSGYVNAGRMEEAKSFFEEM---PVKNLLTLTVMISGLAQNGFGDEGL 410

Query: 38  -----LRPDG-----VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
                +R DG           L AC     +  G ++H  ++    +  L + NA+I MY
Sbjct: 411 KLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMY 470

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           AKCG ++ A ++   M   D VS++++I+    HG   KA++LF                
Sbjct: 471 AKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFD--------------- 515

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE-----IHGYAV- 201
                           +M   GV P+ +T  ++ +  SH   ++ G+      +  Y + 
Sbjct: 516 ----------------QMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 202 --KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGDAS- 257
             ++ Y R       ++D + + G    A+ V D    +    +W A+++    HG+   
Sbjct: 560 PCEDHYAR-------MVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDL 612

Query: 258 ---KAVSLFNEMLNN 269
               A  LF  M  N
Sbjct: 613 GIEAAEQLFKLMPQN 627


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 160/494 (32%), Positives = 272/494 (55%), Gaps = 52/494 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEE----CKALFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           M ++D+V+WN +I+GY Q G  EE    C+ + RE L     + D VT+ +++ A   + 
Sbjct: 311 MIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENL-----KFDCVTLSTLMSAATSTQ 365

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           ++  G E+  + I   ++ D+ + +  + MYAKCGS+  A+ + D    KD + ++ ++S
Sbjct: 366 NLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLS 425

Query: 117 GYMVHGFVEKAMDLFQVMKR---------------------------------------P 137
            Y   G   +A+ LF  M+                                        P
Sbjct: 426 AYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFP 485

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            L +W  +++GLVQN   E  +  +R+MQ SG+RPNA TI+   S   + ++L  G+ IH
Sbjct: 486 NLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIH 545

Query: 198 GYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           GY ++N+ Y  +  + T+++D YAK G ++ A+RVF       L ++ A+ISAYA +G  
Sbjct: 546 GYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKV 605

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            +A++L+  + + G++PD +T T++LSAC +   V++A ++F  M  ++G++P +EHY  
Sbjct: 606 REAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFRDMVSKHGMKPCLEHYGL 665

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           MV +L+ A    +A   + +MP KP A++  +L    S     EL +++  HL E EP+N
Sbjct: 666 MVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDN 725

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG---GLQSFVAKDTSG 433
           +GNY++++N Y+  G WDE  ++RE MK  GL K PG SWI+  G   G+  FVA D + 
Sbjct: 726 SGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDKTH 785

Query: 434 DKSEQIYLILERLL 447
            ++++I  +L  LL
Sbjct: 786 LRNDEIQRMLALLL 799



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 194/401 (48%), Gaps = 38/401 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+ V+WN+++ GY Q G YEE   L  EM    +  P  VTV + L A      I  G +
Sbjct: 213 RNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGI-EPTRVTVSTCLSASANMGGIEEGKQ 271

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H   I + +++D  +  +++  Y K G ++YA  + D M +KD V              
Sbjct: 272 SHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVV-------------- 317

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            TWN +ISG VQ    E  + + + M+   ++ + VT+S++ S 
Sbjct: 318 -----------------TWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSA 360

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   NLK GKEI  Y +++  + +I +A+  +D YAK G +  A++VFD    + LI+W
Sbjct: 361 ATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILW 420

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             ++SAYA  G + +A+ LF EM    + P+ +T+  ++ +   +G V++A ++F  M  
Sbjct: 421 NTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQS 480

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
             GI P++  +  M+  L +     EA  F+ KM    ++P+A      L        + 
Sbjct: 481 S-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLH 539

Query: 361 LGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            G+ +  ++   +  +    I   + ++Y++ G  ++A+RV
Sbjct: 540 FGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERV 580



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 197/424 (46%), Gaps = 42/424 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 112 RNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIF-PDNFVVPNVCKACGALQWSRFGRG 170

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V ++ +   +++ ++L  MY KCG LD AR + D + D++ V+++A++ GY+ +G 
Sbjct: 171 VHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGM 230

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A                               + L+ EM+  G+ P  VT+S+  S 
Sbjct: 231 YEEA-------------------------------IRLLSEMRKEGIEPTRVTVSTCLSA 259

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T+I++ Y K G +  A+ +FD    + ++ W
Sbjct: 260 SANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTW 319

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +IS Y   G   +A+ +   M    ++ D VT + ++SA   +  +    +I      
Sbjct: 320 NLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEI-QCYCI 378

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELG 362
           ++G++  +   +  V + ++   I  A + V    V+    +W  LL   + SG   E  
Sbjct: 379 RHGLESDIVLASTAVDMYAKCGSIVNAKK-VFDSTVQKDLILWNTLLSAYADSGLSGEAL 437

Query: 363 KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR-SWIEC 419
           +   +   E  P N  T N II++ L  + G+ +EA  +  QM+ SG+   P   SW   
Sbjct: 438 RLFYEMQLESVPPNVITWNLIILSLL--RNGQVNEAKEMFLQMQSSGI--FPNLISWTTM 493

Query: 420 SGGL 423
             GL
Sbjct: 494 MNGL 497



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 45/326 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  +++       + +I   L+  YAKC +L+ A+ L  ++  
Sbjct: 52  ILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRV 111

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII                 V  R GL      + G V             EM
Sbjct: 112 RNVFSWAAIIG----------------VKCRIGLG--EGALMGFV-------------EM 140

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +G+ P+   + ++          + G+ +HGY  K      ++VA+++ D Y K G L
Sbjct: 141 LENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVL 200

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    R+ + W A++  Y  +G   +A+ L +EM   GI+P  VT +  LSA 
Sbjct: 201 DDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSAS 260

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G +++     A  I N +     +  S+ ++ C VG++  A  I +         ++
Sbjct: 261 ANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGM-------IE 313

Query: 341 PSAKVWGALLYGASISGDVELGKFVC 366
                W  L+ G    G VE   ++C
Sbjct: 314 KDVVTWNLLISGYVQQGLVEEAIYMC 339



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 123/322 (38%), Gaps = 52/322 (16%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N      L LV EM    +R        I     +  +L  G++I
Sbjct: 9   PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 68

Query: 197 HGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +K  + Y RN Y+ T ++  YAK   L  AQ +F + + R++  W AII      G
Sbjct: 69  HAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIG 128

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
               A+  F EML NGI PD      V  AC         W  F      Y  +  + H 
Sbjct: 129 LGEGALMGFVEMLENGIFPDNFVVPNVCKACGA-----LQWSRFGRGVHGYVAKAGLHHC 183

Query: 315 ACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
             +   L+    +   + +A +    +P + +A  W AL+ G                  
Sbjct: 184 VFVASSLADMYGKCGVLDDARKVFDYIPDR-NAVAWNALMVG------------------ 224

Query: 371 EIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKD 430
                           Y Q G ++EA R+  +M++ G+   P R  +       + +   
Sbjct: 225 ----------------YVQNGMYEEAIRLLSEMRKEGIE--PTRVTVSTCLSASANMGGI 266

Query: 431 TSGDKSEQIYLI----LERLLG 448
             G +S  I ++    L+ +LG
Sbjct: 267 EEGKQSHAIAIVNGLELDNILG 288


>gi|297848568|ref|XP_002892165.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338007|gb|EFH68424.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 429

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 244/414 (58%), Gaps = 4/414 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++S    ++ Y+  GF+E+   LFR+M +S  L  D       L++C  +   V G  VH
Sbjct: 12  LISLTKQLSSYANQGFHEQALTLFRQMHSSFALPLDAHVFSLALKSCAAAFHPVLGGSVH 71

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
              ++S+   + ++  AL+ MY KC S+ +AR L DE+  ++ V ++A+IS Y   G ++
Sbjct: 72  AHSVKSNFLSNPFVGCALLDMYGKCLSVTHARKLFDEIPQRNAVVWNAMISHYTHCGKIQ 131

Query: 126 KAMDLFQVMK-RPGLSTWNAVISGLV--QNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           +A++L++ M   P  S++NA+I G V  ++  ++A+ +  R+M     +PN +T+ ++ S
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGFVGTEDGSYKAI-EFYRKMIDFRFKPNLITLLALVS 190

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S     +  KEIH YA +N  + +  + + +++ Y + G +   Q VF+    R ++ 
Sbjct: 191 ACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGCIVYVQLVFESMTDRDVVA 250

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W+++ISAYA HGDA  A+  F EM +  + PD + F  VL AC+H+GL D+A   F  M 
Sbjct: 251 WSSLISAYALHGDAESALRTFQEMESAKVTPDDIAFLNVLKACSHAGLADEALLYFKRMQ 310

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           G YG++ S +HY+C+V VLSR  R  EA + +  MP KP+AK WGALL      G+VEL 
Sbjct: 311 GDYGLRASRDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEVELA 370

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           +     L++IEPEN  NY+++  +Y   GR +EA+R+R +MKESG+   PG SW
Sbjct: 371 EIAAKELWKIEPENPANYVLLGKIYMSVGRQEEAERLRMEMKESGVKVSPGSSW 424



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 32/192 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP------------------------ 36
           + +R+ V WN+MI+ Y+  G  +E   L+  M   P                        
Sbjct: 109 IPQRNAVVWNAMISHYTHCGKIQEAVELYEAMDVMPNESSFNAIIKGFVGTEDGSYKAIE 168

Query: 37  --------VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
                     +P+ +T+++++ AC          E+H++   + I+    + + L+  Y 
Sbjct: 169 FYRKMIDFRFKPNLITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYG 228

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           +CG + Y + + + M+D+D V++S++IS Y +HG  E A+  FQ M+   ++  +     
Sbjct: 229 RCGCIVYVQLVFESMTDRDVVAWSSLISAYALHGDAESALRTFQEMESAKVTPDDIAFLN 288

Query: 149 LVQNNRHEAVLD 160
           +++   H  + D
Sbjct: 289 VLKACSHAGLAD 300



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 17/193 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----- 55
           M+ RD+V+W+S+I+ Y+  G  E     F+EM ++ V  PD +  ++VL+AC  +     
Sbjct: 243 MTDRDVVAWSSLISAYALHGDAESALRTFQEMESAKV-TPDDIAFLNVLKACSHAGLADE 301

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV-SYSAI 114
           + + F     ++ + +    D + C  L+ + ++ G  + A  ++  M +K    ++ A+
Sbjct: 302 ALLYFKRMQGDYGLRA--SRDHYSC--LVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGAL 357

Query: 115 ISGYMVHGFVEKA-MDLFQVMKRPGLSTWNAVISGLVQNN--RHEAVLDLVREMQASGVR 171
           +     +G VE A +   ++ K    +  N V+ G +  +  R E    L  EM+ SGV+
Sbjct: 358 LGACRNYGEVELAEIAAKELWKIEPENPANYVLLGKIYMSVGRQEEAERLRMEMKESGVK 417

Query: 172 PNAVTISSIFSLF 184
              V+  S + LF
Sbjct: 418 ---VSPGSSWCLF 427


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 266/471 (56%), Gaps = 42/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++ VSW+++I    Q    +E  +LFR+ML S   RP    +++ + AC +S +   
Sbjct: 71  MPDKNAVSWSAIIGACLQDDRCKEGFSLFRQML-SEGSRPSRGAILNAM-ACVRSHEE-- 126

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +V+  V+E+ +  D  + +A  GM+A+CG ++ AR L D +  KD             
Sbjct: 127 ADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKD------------- 173

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L TW   I   V+ +     L L+++M   G+ P+A+T+  +
Sbjct: 174 ------------------LVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGV 215

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
               S  ++ +    +HG       Y++ + V TA+ID Y K G L  A++VFD  + R+
Sbjct: 216 IRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERN 275

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I W+A+IS Y  HG   +A++LF++M    ++PD +TF ++LSAC+HSGLV + W+ FN
Sbjct: 276 IITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFN 334

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M+  +G+ P  EHYACMV +L RA ++ EA +F+ +MPV+P+A VWGALL    I  +V
Sbjct: 335 SMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNV 394

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +L + V   LF+++P N G Y+I+ N+Y+  G+  EAD +R  MK  G+ KI G S IE 
Sbjct: 395 DLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEI 454

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEES 465
              L +FVA D S  +++ IY  LERL+  +R+EGY      +L +V+EE+
Sbjct: 455 KNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEET 505



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 169/403 (41%), Gaps = 73/403 (18%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           ++PD  T   +++AC       FG+ +H  V++   +  ++I N+LI MY KC   + +R
Sbjct: 6   IQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSR 65

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + DEM DK+ VS+SAI                               I   +Q++R + 
Sbjct: 66  QVFDEMPDKNAVSWSAI-------------------------------IGACLQDDRCKE 94

Query: 158 VLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
              L R+M + G RP+    ++++  + SH    +   +++   V+N  D +  V +A  
Sbjct: 95  GFSLFRQMLSEGSRPSRGAILNAMACVRSH----EEADDVYRVVVENGLDFDQSVQSAAA 150

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             +A+ G +  A+++FD    + L+ W   I AY       +A+ L  +M+  GI PD +
Sbjct: 151 GMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAI 210

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQY------GIQPSVEHYACMVGVLSRARRI--- 327
           T   V+ AC+       A  +   ++  +       ++ ++       G L+ AR++   
Sbjct: 211 TLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDG 270

Query: 328 ----------------------SEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGK 363
                                  EA     +M   VKP    + ++L   S SG V  G 
Sbjct: 271 MQERNIITWSAMISGYGMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGW 330

Query: 364 FVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
              + +   F + P    +Y  M ++  +AG+ DEA    E+M
Sbjct: 331 ECFNSMARDFGVTPRPE-HYACMVDILGRAGKLDEACDFIERM 372



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           G++P+  T   I    S   + + G  IH   VK  Y   ++++ ++I  Y K      +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           ++VFD    ++ + W+AII A        +  SLF +ML+ G +P   +  A+L+A A  
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNAMACV 121

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
              ++A D++  +  + G+       +   G+ +R  R+  A + 
Sbjct: 122 RSHEEADDVYRVVV-ENGLDFDQSVQSAAAGMFARCGRVEVARKL 165


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 259/477 (54%), Gaps = 43/477 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--------LRPDGVTVVSVLQAC 52
           + +R+IV+W S+I GY Q     E   +F+E L               D V ++SVL AC
Sbjct: 143 IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202

Query: 53  GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
            + S+      VH   I+  +   + + N L+  YAKCG +  +R + D+M++KD VS++
Sbjct: 203 SRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWN 262

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
           ++I+ Y  +G    A ++F  M                              ++A G + 
Sbjct: 263 SMIAVYAQNGLSTDAFEVFHGM------------------------------LKAGGGKY 292

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N VT+S++    +H   L+ G  +H   +K  Y  N+ +AT+IID Y K G    A+  F
Sbjct: 293 NEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAF 352

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D  K +++  WTA+I+ Y  HG A +A+ +F +M+  G++P+ +TF +VL+AC+H+G ++
Sbjct: 353 DGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLE 412

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + W  FNAMS +Y ++P VEHY CMV +L RA  I EA   +  M V+    +WG+LL  
Sbjct: 413 EGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             I  DVEL +     LF+++P N G Y+++AN+Y+ AGRW + +R+R  +K+ GL K P
Sbjct: 473 CRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPP 532

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G S +E  G +  F+  D    + E+IY  LE L   ++E GYV     +L +V+EE
Sbjct: 533 GYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEE 589



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 46/299 (15%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + D+ SWNS+IA  ++GG  + C++L  F  M    + +P+  T    +++C    D+  
Sbjct: 44  RTDVYSWNSLIAELARGG--DSCESLRAFSWMRKLDI-KPNRSTFPCAIKSCSALFDLNS 100

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   +    + DL++ +ALI MY+KCG L  AR L DE+                 
Sbjct: 101 GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP---------------- 144

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM---------QASGVR 171
                          R  + TW ++I+G VQN+     L + +E          +  G  
Sbjct: 145 ---------------RRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTS 189

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
            ++V + S+ S  S  SN    + +HG A+K   D+ + V   ++D YAK G +  +++V
Sbjct: 190 VDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKV 249

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSG 289
           FD    + ++ W ++I+ YA +G ++ A  +F+ ML   G + + VT + +L ACAH G
Sbjct: 250 FDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEG 308


>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 541

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 267/455 (58%), Gaps = 16/455 (3%)

Query: 9   WNSMIAGYS--QGGFYEEC--KAL--FREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFG 61
           +N MI  Y   +GG    C  KAL  +++MLN  ++ P+ +T   +++ C +       G
Sbjct: 90  YNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIV-PNNLTFPFLVKGCSRLQYGGTVG 148

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H  V++     D+++ N+LI ++   G    AR + DEM  +D VS+++++ GY+ +
Sbjct: 149 EVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRN 208

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASG---VRPNAVTI 177
           G VE A++LF+ M    + TWN++I+GLVQ    +  L++  EMQ  SG   V+P+ +TI
Sbjct: 209 GEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITI 268

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +S+ S  +   ++  GK +H Y  KN  + ++ + TA+++ Y K G +  A  +F+    
Sbjct: 269 ASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPE 328

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +    WTA+IS +A HG   KA   F EM   G++P+ VTF  +LSAC+HSGLV++    
Sbjct: 329 KDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCC 388

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F+ M   Y I+P + HYACMV +LSRAR   EA   +  MP+KP   VWGALL G  + G
Sbjct: 389 FDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHG 448

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL-AKIPGRSW 416
           +++LG+ V  +L ++EP N   YI + ++Y +AG++D A R+R  MKE G+  KIPG S 
Sbjct: 449 NIKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSI 508

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
           IE +G +Q F   +      +++ L+L+RL   M+
Sbjct: 509 IEINGVVQEFSVGEIP---MKELPLVLDRLRNEMK 540



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 153/358 (42%), Gaps = 91/358 (25%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-------LNS------------------ 35
           M  RD+VSWNSM+ GY + G  E    LFR+M        NS                  
Sbjct: 190 MFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIF 249

Query: 36  ---------PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
                     V++PD +T+ SVL AC     I  G  VH ++ ++ I+ D+ I  AL+ M
Sbjct: 250 HEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNM 309

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           Y KCG +  A  + ++M +KD  +++A+IS + +HGF +KA D F  M++          
Sbjct: 310 YGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEK---------- 359

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY- 205
                                +GV+PN VT   + S  SH   ++ G+      +K  Y 
Sbjct: 360 ---------------------AGVKPNHVTFVGLLSACSHSGLVEQGRCCFD-VMKRVYS 397

Query: 206 -DRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL------IIWTAIISAYAAHGDA 256
            +  IY    ++D  ++        R+FD   F  RS+       +W A++     HG+ 
Sbjct: 398 IEPQIYHYACMVDILSRA-------RLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGN- 449

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSAC---AHSGLVDKAWDIFNAMSGQYGIQPSV 311
              + L  ++ +  I  +P      ++ C     +G  D A  I N+M  + GI+  +
Sbjct: 450 ---IKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMK-ERGIETKI 503


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 258/471 (54%), Gaps = 14/471 (2%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV----FGM 62
           V+WN+MI+GY + G YEE    FR M +S  ++ D  T  S++ ACG  ++ +     G 
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRM-HSMGIQEDEYTYTSLISACGSCNEKMGMFNCGR 307

Query: 63  EVHNFVIESHIKMD----LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           +VH +++ + ++      L + NALI  Y K   +  AR + D+M  +D +S++A++SGY
Sbjct: 308 QVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGY 367

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +    +E+A  +F  M    + TW  +ISGL QN   E  L L  +M++ G+ P     +
Sbjct: 368 VNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFA 427

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
              +  S   +L  G++IH   ++  +D  +    A+I  Y++ G +  A+ VF      
Sbjct: 428 GAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYV 487

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             + W A+I+A A HG   KA+ LF +M+   I PD +TF  +L+AC H+GL+ +    F
Sbjct: 488 DSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYF 547

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M  +YGI P  +HYA ++ +L RA    +A   +  MP +  A +W ALL G  I G+
Sbjct: 548 DTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGN 607

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +ELG    D L E+ P   G YII++N+Y+  G+WDE  RVR  M+E G+ K PG SW+E
Sbjct: 608 MELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVE 667

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F+  D    + + +Y  L++L+  M++ GYV     +L ++E E
Sbjct: 668 VENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESE 718



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 157/329 (47%), Gaps = 26/329 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ RD VS+N+MI  YS G        LF +M     L PD  T  SVL A    +D   
Sbjct: 99  LTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFL-PDPFTFSSVLSALSLIADEER 157

Query: 61  GME-VHNFVIESHIKMDLWICNALIGMYAKCGS---------LDYARALLDEMSDKD--E 108
             + +H  VI+    +   + NAL+  Y  C S         +  AR + DE       E
Sbjct: 158 HCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYE 217

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
            S++ +I+GY+ +  +  A +L   +  P    WNA+ISG V+   +E   D  R M + 
Sbjct: 218 PSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSM 277

Query: 169 GVRPNAVTISSIFSLFSHFSNLKG----GKEIHGYAVKNRYDRN----IYVATAIIDTYA 220
           G++ +  T +S+ S     +   G    G+++HGY ++   + +    + V  A+I  Y 
Sbjct: 278 GIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYT 337

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K   +  A+RVFD+   R +I W A++S Y       +A S+F+EM    +    +T+T 
Sbjct: 338 KYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNV----LTWTV 393

Query: 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           ++S  A +G  ++   +FN M  + G++P
Sbjct: 394 MISGLAQNGFGEEGLKLFNQMKSE-GLEP 421



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 169/411 (41%), Gaps = 66/411 (16%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S+  +    VH  ++ S  K + +I N LI +Y K  ++ YAR L D++   D V+ + +
Sbjct: 18  STTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTL 77

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLST--WNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
           +S Y   G V+ A  LF         T  +NA+I+     N   A L+L  +M+  G  P
Sbjct: 78  LSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLP 137

Query: 173 NAVTISSIFSLFSHFSN-LKGGKEIHGYAVK---------NRYDRNIYVATAIIDTYAKT 222
           +  T SS+ S  S  ++  +  + +H   +K              + YV  A       +
Sbjct: 138 DPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSS 197

Query: 223 GFLHGAQRVFDRFKGRSL---------------------------------IIWTAIISA 249
             +  A++VFD      +                                 + W A+IS 
Sbjct: 198 QLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISG 257

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG--- 306
           Y   G   +A   F  M + GIQ D  T+T+++SAC   G  ++   +FN     +G   
Sbjct: 258 YVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC---GSCNEKMGMFNCGRQVHGYIL 314

Query: 307 ---IQPSVEHYA-----CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              ++PS  H+       ++   ++  R+ EA     KMPV+     W A+L G   +  
Sbjct: 315 RTVVEPS-HHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIIS-WNAVLSGYVNAQR 372

Query: 359 VELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +E      + +F   PE N   + +M +  +Q G  +E  ++  QMK  GL
Sbjct: 373 IEEA----NSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGL 419



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 41/195 (21%)

Query: 1   MSKRDIVSWNSMIAGY-------------------------------SQGGFYEECKALF 29
           M  RDI+SWN++++GY                               +Q GF EE   LF
Sbjct: 352 MPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLF 411

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
            +M  S  L P        + AC     +  G ++H+ VI       L   NALI MY++
Sbjct: 412 NQM-KSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSR 470

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAV 145
           CG ++ A ++   M   D VS++A+I+    HG   KA++LF+ M +    P   T+  +
Sbjct: 471 CGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTI 530

Query: 146 IS-----GLVQNNRH 155
           ++     GL++  RH
Sbjct: 531 LTACNHAGLIKEGRH 545


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 267/491 (54%), Gaps = 58/491 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALF---------------REMLNSP-----VLRP 40
           M +R++VSW +MI+ YSQ G+  +   LF               +  L++P        P
Sbjct: 304 MPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEP 363

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           +  T  +VL +C  S   + G ++H+ +I+ + +  +++ ++L+ MYAK G +  AR + 
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           + + ++D VS +A                               +ISG  Q    E  L+
Sbjct: 424 ECLPERDVVSCTA-------------------------------IISGYAQLGLDEEALE 452

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L R +Q  G++ N VT + + +  S  + L  GK++H + +++     + +  ++ID Y+
Sbjct: 453 LFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYS 512

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFT 279
           K G L  ++R+FD    R++I W A++  Y+ HG+  + + LF  M     ++PD VT  
Sbjct: 513 KCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTIL 572

Query: 280 AVLSACAHSGLVDKAWDIFNAMS-GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
           AVLS C+H GL DK  +IFN MS G+  ++P +EHY C+V +L R+ R+ EA EF+ KMP
Sbjct: 573 AVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMP 632

Query: 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398
            +P+A +WG+LL    +  +V++G+F    L EIEP N GNY+I++NLY+ AGRW++   
Sbjct: 633 FEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSS 692

Query: 399 VREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-- 456
           +R+ M +  + K PGRS IE    L +F A D S  + E+I + ++ L    +E GYV  
Sbjct: 693 LRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPD 752

Query: 457 ---LLDEVEEE 464
              +L +V+EE
Sbjct: 753 LSCVLHDVDEE 763



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 22/317 (6%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L  C        G  VH  +I++     +++   LI +Y KC SL  A  + DEM ++
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPER 307

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS++A+IS Y   G+  +A++LF    +  L+   A+    + N     V        
Sbjct: 308 NVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVC------- 360

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
                PN  T +++ +  +       G++IH   +K  Y+ +++V ++++D YAK G +H
Sbjct: 361 ---TEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIH 417

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ VF+    R ++  TAIIS YA  G   +A+ LF  +   G++ + VT+T VL+A +
Sbjct: 418 EARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALS 477

Query: 287 HSGLVDKAWDIFN-----AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
               +D    + N      +     +Q S+       G L+ +RRI +          + 
Sbjct: 478 GLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-------YER 530

Query: 342 SAKVWGALLYGASISGD 358
           +   W A+L G S  G+
Sbjct: 531 TVISWNAMLVGYSKHGE 547


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 255/474 (53%), Gaps = 42/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R IVSW ++++ Y+Q G   E   +F +M    V +PD V +VSVL A     D+  
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDV-KPDCVALVSVLNAFTCLQDLEQ 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  ++ +  +  +L  MYAKCG +  A+ L D+M                 
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKM----------------- 283

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         K P L  WNA+ISG  +N   +  +DL  EM    VRP+ ++I+S 
Sbjct: 284 --------------KSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSA 329

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L+  + +  Y  ++ Y  ++++++A+ID +AK G +  A+ VFDR   R +
Sbjct: 330 ISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDV 389

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I  Y  HG A +A+SL+  M  +G+ P+ VTF  +L AC HSG+V + W  FN 
Sbjct: 390 VVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNR 449

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  + I P  +HYAC++ +L RA  + +A E +  MPV+P   VWGALL        VE
Sbjct: 450 MA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK+    LF I+P NTG+Y+ ++NLY+ A  WD    VR +MKE GL K  G SW+E  
Sbjct: 509 LGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV---------LLDEVEEES 465
           G L+ F   D S  + E+I   +E +   ++E G+V         L DE  EE+
Sbjct: 569 GRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 209/442 (47%), Gaps = 74/442 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +  +  WN++I GYS+   +++   ++ +M  + V  PD  T   +L+ACG  S +  
Sbjct: 79  LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARV-SPDSFTFPHLLKACGGLSHLQM 137

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISGY 118
           G  VH  V     + D+++ N LI +YAKC  L  AR + +   + ++  VS++AI+S Y
Sbjct: 138 GRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G   +A+++F                                +M+   V+P+ V + 
Sbjct: 198 AQNGEPVEALEIFS-------------------------------QMRKMDVKPDCVALV 226

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ + F+   +L+ G+ IH   +K   +    +  ++   YAK G +  A+ +FD+ K  
Sbjct: 227 SVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSP 286

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-W-- 295
           +LI+W A+IS YA +G A  A+ LF+EM+N  ++PD ++ T+ +SACA  G +++A W  
Sbjct: 287 NLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMD 346

Query: 296 ----------DIF--NAMSGQYGIQPSVEH---------------YACMV---GVLSRAR 325
                     D+F  +A+   +    SVE                ++ M+   G+  +AR
Sbjct: 347 EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAR 406

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF----VCDHLFEIEPENTGNYI 381
                   + +  V P+   +  LL   + SG V  G +    + DH  +I P+   +Y 
Sbjct: 407 EAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADH--KINPQQQ-HYA 463

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            + +L  +AG  D+A  V + M
Sbjct: 464 CIIDLLGRAGHLDQAYEVIKCM 485



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 127/248 (51%), Gaps = 4/248 (1%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +I     +G +  A  +F  + RP +  WNA+I G  +NN  +  L +  +MQ + V 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P++ T   +       S+L+ G+ +H    +  ++ +++V   +I  YAK   L  A+ V
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 232 FD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           F+      R+++ WTAI+SAYA +G+  +A+ +F++M    ++PD V   +VL+A     
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQ 236

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            +++   I +A   + G++   +    +  + ++  +++ A     KM   P+  +W A+
Sbjct: 237 DLEQGRSI-HASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAM 294

Query: 350 LYGASISG 357
           + G + +G
Sbjct: 295 ISGYAKNG 302



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 40/237 (16%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++ T +I   +  G +  A++VFD      +  W AII  Y+ +     A+ ++++M   
Sbjct: 54  FLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLA 113

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
            + PD  TF  +L AC   GL       F +A   + G +  V     ++ + ++ RR+ 
Sbjct: 114 RVSPDSFTFPHLLKACG--GLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLG 171

Query: 329 ---------------------------------EATEFVS---KMPVKPSAKVWGALLYG 352
                                            EA E  S   KM VKP      ++L  
Sbjct: 172 CARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNA 231

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMAN-LYSQAGRWDEADRVREQMKESGL 408
            +   D+E G+ +   + ++  E   + +I  N +Y++ G+   A  + ++MK   L
Sbjct: 232 FTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNL 288


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 271/502 (53%), Gaps = 44/502 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K ++  WN MI    +     +   L+ EM+ +   RP+  T  +VL+AC  S  +  G+
Sbjct: 100 KPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHS-RPNKYTYPAVLKACSDSGVVAEGV 158

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVH 121
           +VH  +++  +  D  I ++ I MYA  G L  AR +LD+   + D V ++A+I GY+  
Sbjct: 159 QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRF 218

Query: 122 GFVEKAMDLFQVMK-RPGLSTWNAVISGL------------------------------- 149
           G VE A +LF+ M  R  +STWNA+ISG                                
Sbjct: 219 GEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGY 278

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
           +Q       L++  +MQ   +RP    + S+ S  ++   L  G+ IH YA +N    + 
Sbjct: 279 IQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDG 338

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            + T+++D YAK G +  A  VF++   + +  W A+I   A HG A  A+ LF++M   
Sbjct: 339 VLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM--- 395

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            I P+ +TF  VL+ACAH GLV K   IFN+M  +YG++P +EHY C+V +L RA  ++E
Sbjct: 396 DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTE 455

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A + VS +P +P+  VWGALL      G+VELG+ V   L E+EP+N+G Y +++N+Y++
Sbjct: 456 AEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAK 515

Query: 390 AGRWDEADRVREQMKESGLAKIPGRSWIECSGG-LQSFVAKDTSGDKSEQIYLILERLLG 448
           AGRW+E   VR+ MKE G+   PG S I+   G +  F+  D S  + + IY +L+++  
Sbjct: 516 AGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKE 575

Query: 449 LMREEGY------VLLDEVEEE 464
            ++ EGY      VL D  EEE
Sbjct: 576 RLQMEGYEPDPSQVLFDIDEEE 597



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 39/258 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SW++MI GY Q G + E   +F +M    + RP    + SVL AC     +  
Sbjct: 263 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKI-RPRKFVLPSVLSACANLGALDQ 321

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +   + I++D  +  +L+ MYAKCG +D A  + ++MS+K+  S++A+I G  +
Sbjct: 322 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 381

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+DLF  M                                   + PN +T   +
Sbjct: 382 HGRAEDAIDLFSKMD----------------------------------IYPNEITFVGV 407

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +  +H   ++ G  I   +++  Y  +  I     I+D   + G L  A++V       
Sbjct: 408 LNACAHGGLVQKGLTIFN-SMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 466

Query: 239 -SLIIWTAIISAYAAHGD 255
            +  +W A++ A   HG+
Sbjct: 467 PTPAVWGALLGACRKHGN 484



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 138/306 (45%), Gaps = 22/306 (7%)

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E ++ +F  +++P +  WN +I   ++NN     + L  EM  +  RPN  T  ++    
Sbjct: 89  ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKAC 148

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIW 243
           S    +  G ++H + VK+    + ++ ++ I  YA  G L  A+R+ D   G    + W
Sbjct: 149 SDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCW 208

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I  Y   G+   A  LF  M +  +     T+ A++S  +  G+V+ A + F+ M  
Sbjct: 209 NAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKE 265

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVE 360
           +  I      ++ M+    +     EA E   +M    ++P   V  ++L   +  G ++
Sbjct: 266 RDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 320

Query: 361 LGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
            G+++  H +        + ++   + ++Y++ GR D A  V E+M    ++     SW 
Sbjct: 321 QGRWI--HTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVS-----SWN 373

Query: 418 ECSGGL 423
              GGL
Sbjct: 374 AMIGGL 379


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/528 (31%), Positives = 272/528 (51%), Gaps = 72/528 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEEC-KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD V+WN+++AGY++ G      +A+ R        RPD VT+VSVL AC  +  + 
Sbjct: 77  MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALH 136

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY- 118
              EVH F + + +   + +  A++  Y KCG+++ ARA+ D M  ++ VS++A+I GY 
Sbjct: 137 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196

Query: 119 --------------MVH--------------------GFVEKAMDLFQVMKRPGLST--- 141
                         MV                     G++++   + +++ R GLS+   
Sbjct: 197 DNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVS 256

Query: 142 ---------------------------------WNAVISGLVQNNRHEAVLDLVREMQAS 168
                                            WNA+I G  QN   E    L   MQ  
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLE 316

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
            VRP++ T+ S+    +  S+    + IHGY+++++ D+++YV TA+ID Y+K G +  A
Sbjct: 317 NVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIA 376

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           +R+FD  + R +I W A+I  Y +HG    AV LF EM   G  P+  TF +VL+AC+H+
Sbjct: 377 RRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHA 436

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           GLVD+    F +M   YG++P +EHY  MV +L RA ++ EA  F+  MP++P   V+GA
Sbjct: 437 GLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGA 496

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +L    +  +VEL +     +FE+ PE    ++++AN+Y+ A  W +  RVR  M++ GL
Sbjct: 497 MLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGL 556

Query: 409 AKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            K PG S I+    + +F +  T+   ++ IY  L +L+  +++ GYV
Sbjct: 557 QKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYV 604



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 145/319 (45%), Gaps = 38/319 (11%)

Query: 36  PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY 95
           PVLR    T  ++L+ C   +D+  G  VH  +    +  +     AL  MY KC     
Sbjct: 14  PVLR----TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPAD 69

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           AR + D M  +D V+                               WNAV++G  +N   
Sbjct: 70  ARRVFDRMPSRDRVA-------------------------------WNAVVAGYARNGLP 98

Query: 156 EAVLDLVREMQAS--GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
            + ++ V  MQ    G RP++VT+ S+    +    L   +E+H +A++   D  + V+T
Sbjct: 99  SSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVST 158

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           A++D Y K G +  A+ VFD    R+ + W A+I  YA +G+A++A++LF  M+  G+  
Sbjct: 159 AVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDV 218

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
              +  A L AC   G +D+   +   +  + G+  +V     ++   ++ +R   A + 
Sbjct: 219 TDASVLAALQACGELGYLDEVRRVHELLV-RVGLSSNVSVTNALITTYAKCKRADLAAQV 277

Query: 334 VSKMPVKPSAKVWGALLYG 352
            +++  K +   W A++ G
Sbjct: 278 FNELGNKKTRISWNAMILG 296



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 22/278 (7%)

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P   T +++  L +  ++L  G+ +H              +TA+ + Y K      A+RV
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACA--- 286
           FDR   R  + W A+++ YA +G  S A+     M     G +PD VT  +VL ACA   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 287 --HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
             H+     A+ +   +     +  +V    C  G +  AR + +       MPV+ S  
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDC------MPVRNSVS 187

Query: 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS--QAGRWDEADRVREQ 402
            W A++ G + +G+      +   + + E  +  +  ++A L +  + G  DE  RV E 
Sbjct: 188 -WNAMIDGYADNGNATEAMALFWRMVQ-EGVDVTDASVLAALQACGELGYLDEVRRVHEL 245

Query: 403 MKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
           +   GL+     S +  +  L +  AK    D + Q++
Sbjct: 246 LVRVGLS-----SNVSVTNALITTYAKCKRADLAAQVF 278


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/440 (35%), Positives = 242/440 (55%), Gaps = 1/440 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI+S+ S+++ + +   + +  ++F   + S   RPDG   V  L A G   D   G  V
Sbjct: 83  DIISFTSLMSLHLKLDHHWKAISVFSHAIASG-HRPDGFAAVGALSASGGLGDQRIGSVV 141

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +    +  +L +CNAL+ MY +CG  + AR + D M  KDEV++ +++ GYM    V
Sbjct: 142 HGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGV 201

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A+  F  M      +W A+I+G VQ+ +    L+L  +M   G RPN +TI  + S  
Sbjct: 202 DSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSAC 261

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G+ IHGY  K+    NI V  A++D YAK+G +  A  VF+  + +    WT
Sbjct: 262 ADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWT 321

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS++   G+  KAV LF +ML +GI P+ VTF +VLSAC+H+GL+ +  ++F+ M   
Sbjct: 322 TMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREV 381

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EHY CMV +L R   + EA   +  M V+P   +W +LL      G+  L + 
Sbjct: 382 YHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEI 441

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               + + EP + G Y+++ N+Y+ + RW EA  +R+QM    + K PG SWIE  G + 
Sbjct: 442 AGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVH 501

Query: 425 SFVAKDTSGDKSEQIYLILE 444
            F+ +D + D   +IY+ LE
Sbjct: 502 EFLVEDKTHDARREIYVTLE 521



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 65/288 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----------------NSPVL----- 38
           M  +D V+W SM+ GY +    +   + F +M                    P+      
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                   RP+ +T+V VL AC     +  G  +H +  +S+   ++ + NAL+ MYAK 
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+  A ++ +E+  KD  +++ +IS + V G   KA++LF          W        
Sbjct: 300 GSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF----------W-------- 341

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRN 208
                    D++R    SG+ PN+VT  S+ S  SH   ++ G+E+    ++  Y  D  
Sbjct: 342 ---------DMLR----SGILPNSVTFVSVLSACSHAGLIQEGRELFD-KMREVYHIDPR 387

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGD 255
           +     ++D   + G L  A+ + D       ++IW +++SA  AHG+
Sbjct: 388 LEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGN 435



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 50/372 (13%)

Query: 75  MDLWICNALIGMYAKCGSLD--YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQ 132
           M+  +C+ L+        L   +A+AL   +    +     I   Y   G    A  LF 
Sbjct: 18  MNRSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFD 77

Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
            +  P + ++ +++S  ++ + H   + +     ASG RP+        S      + + 
Sbjct: 78  EIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRI 137

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR------------------ 234
           G  +HG   +   D  + V  A++D Y + G    A+ VFDR                  
Sbjct: 138 GSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMK 197

Query: 235 -------------FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
                           +S + WTA+I+ +       +A+ LF +ML  G +P+ +T   V
Sbjct: 198 CVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGV 257

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL----SRARRISEATEFVSKM 337
           LSACA  G    A D+  A+ G YG + +      +   L    +++  I+ A     ++
Sbjct: 258 LSACADIG----ALDLGRAIHG-YGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEV 312

Query: 338 PVKPSAKVWGALLYGASISGD----VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
            +K  A  W  ++   ++ G+    VEL     D L      N+  ++ + +  S AG  
Sbjct: 313 QMK-DAFTWTTMISSFTVQGNGRKAVEL---FWDMLRSGILPNSVTFVSVLSACSHAGLI 368

Query: 394 DEADRVREQMKE 405
            E   + ++M+E
Sbjct: 369 QEGRELFDKMRE 380



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 14/171 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D  +W +MI+ ++  G   +   LF +ML S +L P+ VT VSVL AC  +  I  G E
Sbjct: 315 KDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL-PNSVTFVSVLSACSHAGLIQEGRE 373

Query: 64  VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVH 121
           + + + E  HI   L     ++ +  + G L+ A AL+D M  + D V + +++S  + H
Sbjct: 374 LFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAH 433

Query: 122 GFVEKA-MDLFQVMKR-PG-----LSTWNAVISGLVQNNRHEAVLDLVREM 165
           G    A +   +++KR PG     +  WN        +NR +  LD+ ++M
Sbjct: 434 GNDRLAEIAGMEIIKREPGDDGVYVLLWNMY----ALSNRWKEALDMRKQM 480


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 264/455 (58%), Gaps = 6/455 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN +I+ Y   G +E+  ++F+ M     L+ D  T+VS L AC    ++  
Sbjct: 91  MPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEI 150

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  ++ +V+ +  +M +   NAL+ M+ KCG LD ARA+ D M DK+   +++++SGY+ 
Sbjct: 151 GERIYRYVV-TEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVS 209

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++A +LF+      +  W A+++G VQ NR +  L+L R MQ + +RP+   + S+
Sbjct: 210 NGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSL 269

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IHGY  +NR   +  V TA++D YAK G +  A  VF   K R  
Sbjct: 270 LTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDT 329

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT++I   A +G + +A+ L+ EM N G++ D +TF AVL+AC+H G V +   IF +
Sbjct: 330 ASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYS 389

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISG 357
           M+ ++ IQP  EHY+C++ +L RA  + EA E + KM     K    V+ +LL  A   G
Sbjct: 390 MTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAARNYG 449

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +V++ + V + L ++E  ++  + ++A++Y+ A RW++   VR +MK+ G+ K PG S I
Sbjct: 450 NVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 509

Query: 418 ECSGGLQSFVAKD--TSGDKSEQIYLILERLLGLM 450
           E  G    F+  +  +S  K ++I  +L +   LM
Sbjct: 510 EVDGVSHEFIVGNDPSSHPKMDEINSMLHQTTHLM 544



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 189/417 (45%), Gaps = 79/417 (18%)

Query: 12  MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES 71
           M+   ++   + +  ALF E L    L PD  T+  VL++ G+   ++ G +VH + +++
Sbjct: 1   MLKSLAESKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKT 59

Query: 72  HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131
            ++ D ++CN+L+GMYA  G ++    + DEM ++D VS++ +IS Y+ HG  E A+ +F
Sbjct: 60  GLESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVF 119

Query: 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
           Q M R                               S ++ +  TI S  S  S   NL+
Sbjct: 120 QRMSRE------------------------------SNLKADEGTIVSTLSACSVLKNLE 149

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            G+ I+ Y V   ++ ++    A++D + K G L  A+ +FD  + +++  WT+++S Y 
Sbjct: 150 IGERIYRYVV-TEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYV 208

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
           ++G   +A  LF          D V +TA+++        D+A ++F  M          
Sbjct: 209 SNGRTDEARELF----ERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM---------- 254

Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
                       AR             ++P   V  +LL G + +G +E GK++  H + 
Sbjct: 255 ----------QTAR-------------IRPDNFVLVSLLTGCAQTGALEQGKWI--HGYI 289

Query: 372 IEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
            E   T + ++   + ++Y++ G  + A  V  +MKE   A     SW     GL +
Sbjct: 290 RENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTA-----SWTSLIYGLAT 341


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 264/469 (56%), Gaps = 14/469 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+M+  Y Q    E+   L++ M+ + V  PD  T   V+QAC        G E+H+ V
Sbjct: 97  WNTMMRAYIQSNSAEKALLLYKLMVKNNV-GPDNYTYPLVVQACAVRLLEFGGKEIHDHV 155

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++     D+++ N LI MYA CG++  AR L DE    D VS+++I++GY+  G + + M
Sbjct: 156 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVM 215

Query: 129 D---LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
           +   LF  M    + +W+A+ISG  QN  +E  L +  EM A+G+R + V + S+ S  +
Sbjct: 216 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 275

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAII----DTYAKTGFLHGAQRVFDRFKGRSLI 241
           H S +K GK IHG  ++   +  + +  A+I    D Y K G +  A  VF+  + + + 
Sbjct: 276 HLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVS 335

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I   A +G   +++ +F+EM NNG+ P+ +TF  VL AC H GLVD+    F +M
Sbjct: 336 SWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASM 395

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             ++GI+P+V+HY CMV +L RA  ++EA + +  MP+ P    WGALL      GD E+
Sbjct: 396 IEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 455

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ V   L E++P++ G +++++N+++  G W++   VR  MK+ G+ K PG S IE +G
Sbjct: 456 GERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANG 515

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
            +  F+A D +     ++  +L  +   ++ EGY      V LD  EEE
Sbjct: 516 VVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEE 564



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 38/288 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSW+++I+GY Q G YEE   +F EM N+  +R D V VVSVL AC   S +  
Sbjct: 224 MDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAHLSIVKT 282

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYA----KCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G  +H  VI   I+  + + NALI MY+    KCG ++ A  + + M +K   S++A+I 
Sbjct: 283 GKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALII 342

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           G  V+G VE+++D+F  MK  G+        G++   RH  ++D  R             
Sbjct: 343 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR------------- 389

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
                    HF+++    E HG       + N+     ++D   + G L+ A+++ +   
Sbjct: 390 --------CHFASM---IEKHG------IEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP 432

Query: 237 -GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               +  W A++ A   HGD      +  +++   +QPD   F  +LS
Sbjct: 433 MAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLS 478



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 110/387 (28%)

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           LDY+  + D + + +   ++ ++  Y+     EKA+ L+++M +  +   N     +V  
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVV-- 136

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
                        QA  VR               F    GGKEIH + +K  +D ++YV 
Sbjct: 137 -------------QACAVR------------LLEF----GGKEIHDHVLKVGFDSDVYVQ 167

Query: 213 TAIIDTYAKTGFLHGAQRVFD----------------------------------RFKGR 238
             +I+ YA  G +  A+++FD                                      +
Sbjct: 168 NTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEK 227

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W+A+IS Y  +G   +A+ +F EM  NG++ D V   +VLSACAH  +V K   + 
Sbjct: 228 DMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV-KTGKMI 286

Query: 299 NAMSGQYGIQPSVEHYACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           + +  + GI+  V     ++ + S    +   +  A E  + M  K     W AL+ G +
Sbjct: 287 HGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEK-GVSSWNALIIGLA 345

Query: 355 ISGDVE--LGKF--------------------VCDHL----------------FEIEPEN 376
           ++G VE  L  F                     C H+                  IEP N
Sbjct: 346 VNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP-N 404

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQM 403
             +Y  M +L  +AG  +EA+++ E M
Sbjct: 405 VKHYGCMVDLLGRAGLLNEAEKLIESM 431



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 105/237 (44%), Gaps = 4/237 (1%)

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF--LHGAQRV 231
            +T+S + +   +  NLK    I    +   +  + + A+ ++     + F  L  + ++
Sbjct: 26  TITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQI 85

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
           FDR +  +  +W  ++ AY     A KA+ L+  M+ N + PD  T+  V+ ACA   L 
Sbjct: 86  FDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLE 145

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
               +I + +  + G    V     ++ + +    + +A +   + PV  S   W ++L 
Sbjct: 146 FGGKEIHDHVL-KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS-WNSILA 203

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G    GD+           E++ ++  ++  + + Y Q G ++EA  +  +M  +G+
Sbjct: 204 GYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM 260


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 242/465 (52%), Gaps = 33/465 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S++  V +N++++GY       E   LFR+M N   +  + VT++ ++ AC    ++  G
Sbjct: 113 SRKLTVCYNALVSGYVSNSKCSEAVLLFRQM-NEEGVPVNSVTLLGLIPACVSPINLELG 171

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H   ++     D+ + N  I MY KCGS++Y                          
Sbjct: 172 SSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNY-------------------------- 205

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                A  LF  M   GL +WNA++SG  QN     VL+L R M  +GV P+ VT+  + 
Sbjct: 206 -----AQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 260

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  ++      G E+      + +  N ++  A+I+ YA+ G L  AQ VFD    R+L+
Sbjct: 261 SSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 320

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTAII  Y  HG    AV LF EM+ +GI+PD   F  VLSAC+H+GL D+  + F  M
Sbjct: 321 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMM 380

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              Y ++P  EHY+CMV +L RA R+ EA   +  MP+KP   VWGALL    I  +VEL
Sbjct: 381 KRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVEL 440

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +   + + E+EPEN G Y++++N+YS A       R+R  MKE  L K PG S++E  G
Sbjct: 441 AELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKG 500

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLG-LMREEGYVLLDEVEEES 465
            +  F+  D +  +S++IY +LE L   +M+E G    D  EE +
Sbjct: 501 RVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESN 545



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 181/403 (44%), Gaps = 41/403 (10%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+ +   ++   + +  +L+ +ML     RP+  T    L++C   S  + G + H  +
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGYMVHGFVEK 126
            +     + ++   LI MY K   +D AR + +E   S K  V Y+A++SGY        
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGY-------- 127

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                                  V N++    + L R+M   GV  N+VT+  +      
Sbjct: 128 -----------------------VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVS 164

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             NL+ G  +H   +K  +D ++ V    I  Y K G ++ AQ++FD    + LI W A+
Sbjct: 165 PINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAM 224

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-FNAMSGQY 305
           +S YA +G A+  + L+  M  NG+ PDPVT   VLS+CA+ G      ++ F   +  +
Sbjct: 225 VSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGF 284

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
              P + +   ++ + +R   +++A      MP + +   W A++ G  + G  E+   +
Sbjct: 285 TSNPFLNN--ALINMYARCGNLTKAQAVFDGMPER-TLVSWTAIIGGYGMHGHGEIAVQL 341

Query: 366 CDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
              +    IEP+ T  ++ + +  S AG  D+     + MK +
Sbjct: 342 FKEMIRSGIEPDGTA-FVCVLSACSHAGLTDQGLEYFKMMKRN 383



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 36/285 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + ++SWN+M++GY+Q G       L+R M  + V  PD VT+V VL +C        
Sbjct: 213 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV-HPDPVTLVGVLSSCANLGAQSV 271

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV   +  S    + ++ NALI MYA+CG+L  A+A+ D M ++  VS++AII GY +
Sbjct: 272 GHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGM 331

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+ LF                               +EM  SG+ P+      +
Sbjct: 332 HGHGEIAVQLF-------------------------------KEMIRSGIEPDGTAFVCV 360

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  SH      G E      +N + +      + ++D   + G L  AQ + +    + 
Sbjct: 361 LSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKP 420

Query: 240 L-IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
              +W A++ A   H +   A   F  ++   ++P+ + +  +LS
Sbjct: 421 DGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLS 463


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 257/472 (54%), Gaps = 21/472 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSD 57
           M  RD +SWN MI GY+Q G   E + LF E+    V       +VS     G   +++ 
Sbjct: 241 MPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA--WTAMVSGFVQNGMLDEATR 298

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           I   M   N V         W  NA+I  Y +   ++ AR L D+M  ++  S++ +++G
Sbjct: 299 IFEEMPEKNEVS--------W--NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTG 348

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y   G +++A  LF  M +    +W A+ISG  Q+ + E  L L  +M+  G   N   +
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +   S  +  + L+ GK++HG  VK  +        A++  Y K G +  A  VF+    
Sbjct: 409 ACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE 468

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + ++ W  +I+ YA HG   +A++LF E +   I+PD VT   VLSAC+H+GLVDK  + 
Sbjct: 469 KDIVSWNTMIAGYARHGFGKEALALF-ESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEY 527

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN+M   YGI  + +HY CM+ +L RA R+ EA   +  MP  P A  WGALL  + I G
Sbjct: 528 FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D ELG+   + +FE+EP+N+G Y++++NLY+ +GRW E   +R +M++ G+ K+PG SW+
Sbjct: 588 DTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWV 647

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E       F   D S  ++E+IY  LE L   ++++G+V     +L +VEEE
Sbjct: 648 EIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEE 699



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 197/437 (45%), Gaps = 51/437 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+M++G++Q GF EE + +F +ML    +  +G     +L A  Q+  I  
Sbjct: 148 MPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRI-- 200

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E    + +S +  ++   N L+G Y +   LD AR+L D M  +D++S++ +I+GY  
Sbjct: 201 --EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQ 258

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G + +A  LF+ +    +  W A++SG VQN   +    +  EM       N V+ +++
Sbjct: 259 NGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAM 314

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +     ++  +E+          RN      ++  YA+ G +  A+ +FD    R  
Sbjct: 315 IAGYVQSQQIEKAREL----FDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           I W A+IS YA  G + +A+ LF +M  +G   +       LS+CA           H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 290 LVDKAWDI----FNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEA 330
           LV   +       NA+   YG   S+E                +  M+   +R     EA
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 331 TEFVS--KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANL 386
                  KM +KP       +L   S +G V+ G    + +++      N  +Y  M +L
Sbjct: 491 LALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDL 550

Query: 387 YSQAGRWDEADRVREQM 403
             +AGR DEA  + + M
Sbjct: 551 LGRAGRLDEALNLMKSM 567



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 188/418 (44%), Gaps = 67/418 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DIV WN  I+ Y + G  E   ++F  M      R   VT  +++   G  S+  F  + 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR-----RRSTVTYNAMIS--GYLSNNKF--DC 109

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              V E     DL   N ++  Y K G+L  ARAL ++M +KD VS++A++SG+  +GFV
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E+A  +F  M      +WN ++S  VQN R E    L                       
Sbjct: 170 EEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRL----------------------- 206

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                             ++ D  I     ++  Y +   L  A+ +FDR   R  I W 
Sbjct: 207 ----------------FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQP--DPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
            +I+ YA +G  S+A  LF E+      P  D   +TA++S    +G++D+A  IF  M 
Sbjct: 251 IMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +  +      +  M+    ++++I +A E   +MP + ++  W  ++ G +  G+++  
Sbjct: 305 EKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMVTGYAQCGNIDQA 358

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           K + D   E+   +  ++  M + Y+Q+G+ +EA  +  +MK  G   I  RS + C+
Sbjct: 359 KILFD---EMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG--GILNRSALACA 411


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 263/465 (56%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ VSW  +I G+ Q G + E   LF +M  + ++  D   + +++  C  + DI  
Sbjct: 352 LRDRNSVSWTVLIGGFLQYGCFSESVELFNQM-RAELMAVDQFALATLISGCCNTMDICL 410

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  ++S     + + N+LI MYAKCG+L  A  + + M+++D VS++ +I+ Y  
Sbjct: 411 GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQ 470

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
            G + KA + F  M    + TWNA++   +Q+   E  L +  +M     V P+ VT  +
Sbjct: 471 VGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVT 530

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G+ VK     +  V  A+I  Y+K G +  A++ FD    + 
Sbjct: 531 LFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKD 590

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+ W A+I+ Y+ HG   +A+ +F+++LN G +PD +++ AVLS C+HSGLV++    F+
Sbjct: 591 LVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFD 650

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   + I P +EH++CMV +L RA  + EA   + +MP+KP+A+VWGALL      G+ 
Sbjct: 651 MMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNN 710

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +L +    HLF+++   +G Y+++A +Y+ AG+ D++ +VR+ M++ G+ K PG SW+E 
Sbjct: 711 DLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEV 770

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
           +  +  F A+D S  +   I   L+ L+  +   GYV  +    E
Sbjct: 771 NNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTESPRSE 815



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 153/288 (53%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN++++GY Q G +     +F  M  +    P+  T   V+++CG       
Sbjct: 118 MPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEV 177

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++   + +   + D  +  AL+ M  +CG++D+A      + +   +  ++++ GY  
Sbjct: 178 ALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAK 237

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V+ A+++F+ M    + +WN VIS L ++ R    LD+V +M   GVRP++ T +S 
Sbjct: 238 SHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSS 297

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S+L+ GK++H   ++N    + YVA+A+++ YAK G    A+RVF   + R+ 
Sbjct: 298 LTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNS 357

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           + WT +I  +  +G  S++V LFN+M    +  D      ++S C ++
Sbjct: 358 VSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNT 405



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 202/487 (41%), Gaps = 101/487 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN +I+  S+ G   E   +  +M    V RPD  T  S L AC + S + +
Sbjct: 251 MPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGV-RPDSTTYTSSLTACARLSSLEW 309

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI +   +D ++ +A++ +YAKCG    A+ +   + D++ VS          
Sbjct: 310 GKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS---------- 359

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W  +I G +Q       ++L  +M+A  +  +   ++++
Sbjct: 360 ---------------------WTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATL 398

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S   +  ++  G ++H   +K+ + R + V+ ++I  YAK G L  A+ +F+    R +
Sbjct: 399 ISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDI 458

Query: 241 IIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQ----------------- 272
           + WT +I+AY+  G+ +KA   F           N ML   IQ                 
Sbjct: 459 VSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTE 518

Query: 273 ----PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
               PD VT+  +   CA  G  +K  D     + + G+         ++ + S+  RIS
Sbjct: 519 KDVIPDWVTYVTLFRGCADIG-ANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRIS 577

Query: 329 EAT---EFVSKMPV-------------------------------KPSAKVWGALLYGAS 354
           EA    +F+S+  +                               KP    + A+L G S
Sbjct: 578 EARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCS 637

Query: 355 ISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            SG VE GKF  D +      + G  ++  M +L  +AG   EA  + ++M     A++ 
Sbjct: 638 HSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVW 697

Query: 413 GRSWIEC 419
           G     C
Sbjct: 698 GALLSAC 704



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 166/380 (43%), Gaps = 43/380 (11%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL-DEMSDKD 107
           L++CG  S +     +H+ +I   +   +++ N L+  Y  CG+L  AR LL DE+++ +
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            ++++ +++GY   G +  A++LF  M    +++WN ++SG  Q+ +    LD+   M+ 
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 168 SG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           +G   PNA T   +          +   ++ G   K     +  V TA++D   + G + 
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMD 211

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A + F R K  ++I   +++  YA       A+ +F  M     + D V++  V+SA +
Sbjct: 212 FASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSM----PERDVVSWNMVISALS 267

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
            SG V +A D+   M G+ G++P    Y   +   +R                  S+  W
Sbjct: 268 KSGRVREALDMVVDMHGK-GVRPDSTTYTSSLTACARL-----------------SSLEW 309

Query: 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           G  L+   I     +  +V   + E              LY++ G + EA RV   +++ 
Sbjct: 310 GKQLHVQVIRNLPHIDPYVASAMVE--------------LYAKCGCFKEAKRVFSSLRDR 355

Query: 407 GLAKIPGRSWIECSGGLQSF 426
                   SW    GG   +
Sbjct: 356 N-----SVSWTVLIGGFLQY 370



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 15/248 (6%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T++    +CG  SD        N + +   + ++   N ++  YAK GSL  A  L   M
Sbjct: 65  TLLHAYLSCGALSD------ARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRM 118

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-----HEAV 158
             +D  S++ I+SGY   G    A+D+F  M++ G S  NA   G V  +      HE  
Sbjct: 119 PTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVA 178

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           L L+  +     + +    +++  +        G  +          +  I    +++  
Sbjct: 179 LQLLGLLSKFDSQDDPDVQTALVDMLVRC----GAMDFASKQFSRIKNPTIICRNSMLVG 234

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           YAK+  +  A  +F     R ++ W  +ISA +  G   +A+ +  +M   G++PD  T+
Sbjct: 235 YAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTY 294

Query: 279 TAVLSACA 286
           T+ L+ACA
Sbjct: 295 TSSLTACA 302


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 238/441 (53%), Gaps = 45/441 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG--- 61
           D++SW ++I  YS+ G+  E  A F  M  +     D +T+V VL AC Q  D   G   
Sbjct: 203 DLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA----DRMTLVVVLSACSQLGDFTLGKKI 258

Query: 62  ---MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
              M+ H F + S    D+++ NAL+ MY KCG    AR                     
Sbjct: 259 LAYMDHHLFDVHS----DVFLGNALLDMYLKCGQPHLAR--------------------- 293

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                      LF +M    L +WN++ISGL      +  L + R MQ  G++P++VT+ 
Sbjct: 294 ----------QLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLV 343

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            + +  ++  +L+ GK +H Y  KN    + YVA A++D YAK G +  A  VF   K +
Sbjct: 344 GVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCK 403

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +  +TA+I  +A HG A +A+++F+EM   G++PD VT   VLSAC+H+GL+++    F
Sbjct: 404 DVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHF 463

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             MS  Y +QP  EHY CMV +L RA  ISEA  F +KMP+ P A VWG+LL    I   
Sbjct: 464 QDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAK 523

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VELG+ V   L E+EPE  G YI+M+N+YS A RW +A + R+ MK++ + K PG S IE
Sbjct: 524 VELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIE 583

Query: 419 CSGGLQSFVAKDTSGDKSEQI 439
             G +  F   + S  KS ++
Sbjct: 584 VDGMVHEFRKGEKSHPKSREM 604



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 99/160 (61%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWNSMI+G +  G ++E   +FR M  +  L+PD VT+V VL +C    D+  
Sbjct: 299 MPVKNLVSWNSMISGLAHQGLFKEALHMFRRM-QTMGLKPDSVTLVGVLNSCANLGDLEL 357

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++ ++H+K D ++ NAL+ MYAKCGS+D A  +   M  KD  SY+A+I G+ +
Sbjct: 358 GKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAM 417

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG  ++A+ +F  M R G+   +  + G++    H  +L+
Sbjct: 418 HGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLE 457



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 172/420 (40%), Gaps = 84/420 (20%)

Query: 27  ALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
           +L+R+ML    L PD  T+  +L+AC QS   +  +++H   I++ +  +L++ N L+  
Sbjct: 124 SLYRQMLLIG-LSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRF 182

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YA                               V GF+E    +F       L +W  +I
Sbjct: 183 YA-------------------------------VSGFIEAVEKVFDQGPHWDLISWTTLI 211

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206
               +       +     M  +  R   +T+  + S  S   +   GK+I  Y   + +D
Sbjct: 212 QAYSKMGYPSEAIAAFFRMNCTADR---MTLVVVLSACSQLGDFTLGKKILAYMDHHLFD 268

Query: 207 --RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
              ++++  A++D Y K G  H A+++F     ++L+ W ++IS  A  G   +A+ +F 
Sbjct: 269 VHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFR 328

Query: 265 EMLNNGIQPDPVTFTAVLSACA-----------HS------------------------G 289
            M   G++PD VT   VL++CA           HS                        G
Sbjct: 329 RMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCG 388

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVW 346
            +D+A+ +F AM  +      V  Y  M+   +   +   A    S+MP   V+P     
Sbjct: 389 SIDQAFMVFQAMKCK-----DVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTL 443

Query: 347 GALLYGASISGDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             +L   S +G +E G+        L+ ++P+ T +Y  M +L  +AG   EA+    +M
Sbjct: 444 VGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQ-TEHYGCMVDLLGRAGLISEAEAFTNKM 502



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 42/301 (13%)

Query: 142 WNAVISGL-VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +NA+I  L   NN    +  L R+M   G+ P+  T+  +    S         +IH ++
Sbjct: 105 FNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHS 164

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +K     N++V   ++  YA +GF+   ++VFD+     LI WT +I AY+  G  S+A+
Sbjct: 165 IKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAI 224

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSG---------------LVDKAWDIF--NAM-- 301
           + F  M       D +T   VLSAC+  G               L D   D+F  NA+  
Sbjct: 225 AAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLD 281

Query: 302 ----SGQYGIQPSVEH---------YACMVGVLSRARRISEATEFVSKMP---VKPSAKV 345
                GQ  +   + H         +  M+  L+      EA     +M    +KP +  
Sbjct: 282 MYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVT 341

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRVREQM 403
              +L   +  GD+ELGK+V  ++ +   +  G Y+   + ++Y++ G  D+A  V + M
Sbjct: 342 LVGVLNSCANLGDLELGKWVHSYIDKNHMKADG-YVANALVDMYAKCGSIDQAFMVFQAM 400

Query: 404 K 404
           K
Sbjct: 401 K 401


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/493 (33%), Positives = 272/493 (55%), Gaps = 28/493 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL-----FREMLNSPVLRPDGVTVVSVLQACGQS 55
           M +R+  SWN++I G+S+    +E KAL     F EM++   + P+  T  SVL+AC ++
Sbjct: 85  MPQRNCFSWNTIIRGFSES---DEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE---------MSDK 106
             I  G ++H   ++     D ++ + L+ MY  CG +  AR L  +         M+D+
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201

Query: 107 DE-----VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
            +     V ++ +I GYM  G  + A  LF  M++  + +WN +ISG   N   +  +++
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
            REM+   +RPN VT+ S+    S   +L+ G+ +H YA  +    +  + +A+ID Y+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G +  A  VF+R    ++I W+A+I+ +A HG A  A+  F +M   G++P  V +  +
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           L+AC+H GLV++    F+ M    G++P +EHY CMV +L R+  + EA EF+  MP+KP
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
              +W ALL    + G+VE+GK V + L ++ P ++G Y+ ++N+Y+  G W E   +R 
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 402 QMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------ 455
           +MKE  + K PG S I+  G L  FV +D S  K+++I  +L  +   +R  GY      
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ 561

Query: 456 VLLDEVEEESAYV 468
           VLL+  EE+   V
Sbjct: 562 VLLNLEEEDKENV 574


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 266/473 (56%), Gaps = 16/473 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREM-----LNSPVLRPDGVTVVSVLQACGQSS 56
           + R++VS+N++I+  ++ G   E   +F ++     L    +  D  TVVS   AC    
Sbjct: 125 ASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLR 184

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D     E+H  V+ S +++ + + NA++  Y+K G ++ AR + D+M+ +D VS++++I+
Sbjct: 185 DARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIA 244

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY     ++ A+ +F +M       W A+ISG  QN   E  L+L   M   GV P    
Sbjct: 245 GYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFA 304

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFD 233
           + S     +    +  GKE+HG+ ++        N+++  A+ID Y+K G +  A  VFD
Sbjct: 305 LVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFD 364

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R +I W ++++ ++ +G   +++++F  ML + +QP  VTF AVL+AC+H+GLV  
Sbjct: 365 RMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSD 424

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALL 350
              I  +M   +G++P  EHYA  +  L R R++ EA+EF+  +  K    +   WGALL
Sbjct: 425 GRRILESMQ-DHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALL 483

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               + G++E+ + V + LF++EPEN+G Y++++N+YS AG+WD+A +VR  MK  GL K
Sbjct: 484 GACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRK 543

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
               SWIE       FVA DTS  ++ +IY +L++L   M    +++   VEE
Sbjct: 544 DQAYSWIEVQRAKHMFVADDTSHHEANEIYEMLDKLFHHM----FIIGGNVEE 592



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 174/408 (42%), Gaps = 45/408 (11%)

Query: 45  VVSVLQACGQSSDIV-FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           V+++L+    + D+   G  VH  ++++ +     + N L+ +YA   +   + A  D++
Sbjct: 31  VLALLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDL 90

Query: 104 SDKDEVSYSAIISGYMV-HGFVEKAMDLFQVMKRP--GLSTWNAVISGLVQNNRHEAVLD 160
             K+  SY+++++      G +  A+ L   M      + ++N VIS L ++ R    L 
Sbjct: 91  PHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALR 150

Query: 161 LV------REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +       R +    V  +  T+ S  S  +   + +  +E+HG  V +  +  + +A A
Sbjct: 151 VFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANA 210

Query: 215 IIDTYAKTG-------------------------------FLHGAQRVFDRFKGRSLIIW 243
           ++D Y+K G                                L  A +VFD    +  I W
Sbjct: 211 MVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAW 270

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMS 302
           TA+IS +  +G+   A+ LF  M   G+ P P    + L ACA  GLV +  ++    + 
Sbjct: 271 TALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILR 330

Query: 303 GQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              G  P +V  +  ++ + S+   +  A     +M ++     W +++ G S +G  + 
Sbjct: 331 RSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERDIISWNSMVTGFSHNGQGKQ 389

Query: 362 GKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              V + + + E + T   ++ +    S AG   +  R+ E M++ G+
Sbjct: 390 SLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGV 437



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 49/217 (22%)

Query: 1   MSKRDIVSWNSMIAGY-------------------------------SQGGFYEECKALF 29
           M+ RD VSW SMIAGY                                Q G  E    LF
Sbjct: 231 MTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELF 290

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGM 86
             M    V+ P    +VS L AC +   +  G EVH F++   I  D   ++I NALI M
Sbjct: 291 ERMTGEGVV-PTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDM 349

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTW 142
           Y+KCG +  A A+ D M ++D +S++++++G+  +G  ++++ +F+ M +    P   T+
Sbjct: 350 YSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTF 409

Query: 143 NAVIS-----GLVQNNRHEAVLDLVREMQASGVRPNA 174
            AV++     GLV + R      ++  MQ  GV P A
Sbjct: 410 LAVLTACSHAGLVSDGRR-----ILESMQDHGVEPRA 441



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDI+SWNSM+ G+S  G  ++  A+F  ML   V +P  VT ++VL AC  +  +  
Sbjct: 366 MLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEV-QPTYVTFLAVLTACSHAGLVSD 424

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV----SYSAIIS 116
           G  +   + +  ++       A I    +   L+ A   +  +S K  +    S+ A++ 
Sbjct: 425 GRRILESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLG 484

Query: 117 GYMVHGFVEKAMD----LFQV 133
              VHG +E A +    LFQ+
Sbjct: 485 ACHVHGNIEIAEEVAEALFQL 505


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/446 (34%), Positives = 248/446 (55%), Gaps = 1/446 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWNSMI GY+Q G   E  +LF  M    +L  D  T+VS+L AC    ++ F
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLL-ADEFTLVSLLFACSAEGNLEF 229

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+ ++    ++DL + NAL+ MY KCG L  A    D M  K+ VS+++++     
Sbjct: 230 GKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAK 289

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              ++ A D F+ +    + +WNA+IS  VQ  R    LDL   M+  G+ P+  T++++
Sbjct: 290 RASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S      +L  GK IH     N ++  + +  +++D YA+ G +  A  +F     +++
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNV 409

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W AII A A HG A  A+  F  M+ +   PD +TF A+LSAC H GL++     F A
Sbjct: 410 ISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQA 469

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P VEHYACMV +L R  ++++A + +  MP++P   VWGALL    I G ++
Sbjct: 470 MRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQ 529

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK V   L E+E  + G +++++N+  +  +W++  R+R+ M+E G+ K  G S IE +
Sbjct: 530 IGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL 446
             +    A+    + S+ +Y+  +RL
Sbjct: 590 SNIHESGAEGIGHESSDDMYVGDDRL 615



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 183/407 (44%), Gaps = 14/407 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D   +NS+I  Y      +E   L R M+   +L P+  T+  +L+AC +       M  
Sbjct: 74  DRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL-PNEFTLPFLLKACARVQAWEHVMVT 132

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++      +++ NAL+  YA  GSL  +R   DEM D++ VS++++I+GY   G  
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNT 192

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSI 180
            +A  LF+ M+R GL      +  L+     E  L+  +     +   G R + +  +++
Sbjct: 193 REACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANAL 252

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             ++      K G  +  +   +    +N    T+++   AK   +  A+  F++   +S
Sbjct: 253 VDMYG-----KCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKS 307

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I W A+IS Y   G   +A+ L+N M   G+ PD  T  AVLSAC   G +     I +
Sbjct: 308 IISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHD 367

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +   +   P V  +  ++ + +R  ++  A    S+MP K +   W A++   ++ G  
Sbjct: 368 CIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIGALAMHGRA 425

Query: 360 ELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           +    F    +F+  P +   ++ + +  +  G  +      + M+ 
Sbjct: 426 QDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRH 472



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 17/329 (5%)

Query: 89  KCGSLDYARAL--------LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           +CGS+     L        +D+++ +   SY A+ +G    G V  A  LF  +  P   
Sbjct: 21  RCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAG----GGVWYARQLFDRIPDPDRF 76

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
            +N++I     ++  +  L L+R M   G+ PN  T+  +    +     +     HG  
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK  +   ++V  A++ +YA  G L  ++R FD    R+++ W ++I+ YA  G+  +A 
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           SLF  M   G+  D  T  ++L AC+  G ++    + + +  + G +  +     +V +
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCRIDLILANALVDM 255

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
             +   +  A      MP K +A  W ++L   +    ++  +   D   +I  ++  ++
Sbjct: 256 YGKCGDLLMAHTCFDMMPFK-NAVSWTSMLCALAKRASIDAAR---DWFEQIPEKSIISW 311

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLA 409
             M + Y Q GR+ EA  +  +MK  GLA
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLA 340


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 266/473 (56%), Gaps = 16/473 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREM-----LNSPVLRPDGVTVVSVLQACGQSS 56
           + R++VS+N++I+  ++ G   E   +F ++     L    +  D  TVVS   AC    
Sbjct: 125 ASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLR 184

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D     E+H  V+ S +++ + + NA++  Y+K G ++ AR + D+M+ +D VS++++I+
Sbjct: 185 DARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIA 244

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY     ++ A+ +F +M       W A+ISG  QN   E  L+L   M   GV P    
Sbjct: 245 GYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFA 304

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFD 233
           + S     +    +  GKE+HG+ ++        N+++  A+ID Y+K G +  A  VFD
Sbjct: 305 LVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFD 364

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R +I W ++++ ++ +G   +++++F  ML + +QP  VTF AVL+AC+H+GLV  
Sbjct: 365 RMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSD 424

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALL 350
              I  +M   +G++P  EHYA  +  L R R++ EA+EF+  +  K    +   WGALL
Sbjct: 425 GRRILESMQ-DHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALL 483

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               + G++E+ + V + LF++EPEN+G Y++++N+YS AG+WD+A +VR  MK  GL K
Sbjct: 484 GACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRK 543

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
               SWIE       FVA DTS  ++ +IY +L++L   M    +++   VEE
Sbjct: 544 DQAYSWIEVQRAKHMFVADDTSHHEANEIYEMLDKLFHHM----FIIGGNVEE 592



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 174/408 (42%), Gaps = 45/408 (11%)

Query: 45  VVSVLQACGQSSDIV-FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           V+++L+    + D+   G  VH  ++++ +     + N L+ +YA   +   + A  D++
Sbjct: 31  VLALLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDL 90

Query: 104 SDKDEVSYSAIISGYMV-HGFVEKAMDLFQVMKRP--GLSTWNAVISGLVQNNRHEAVLD 160
             K+  SY+++++      G +  A+ L   M      + ++N VIS L ++ R    L 
Sbjct: 91  PHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALR 150

Query: 161 LV------REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +       R +    V  +  T+ S  S  +   + +  +E+HG  V +  +  + +A A
Sbjct: 151 VFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANA 210

Query: 215 IIDTYAKTG-------------------------------FLHGAQRVFDRFKGRSLIIW 243
           ++D Y+K G                                L  A +VFD    +  I W
Sbjct: 211 MVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAW 270

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMS 302
           TA+IS +  +G+   A+ LF  M   G+ P P    + L ACA  GLV +  ++    + 
Sbjct: 271 TALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILR 330

Query: 303 GQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              G  P +V  +  ++ + S+   +  A     +M ++     W +++ G S +G  + 
Sbjct: 331 RSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERDIISWNSMVTGFSHNGQGKQ 389

Query: 362 GKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              V + + + E + T   ++ +    S AG   +  R+ E M++ G+
Sbjct: 390 SLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGV 437



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 49/217 (22%)

Query: 1   MSKRDIVSWNSMIAGY-------------------------------SQGGFYEECKALF 29
           M+ RD VSW SMIAGY                                Q G  E    LF
Sbjct: 231 MTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELF 290

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGM 86
             M    V+ P    +VS L AC +   +  G EVH F++   I  D   ++I NALI M
Sbjct: 291 ERMTGEGVV-PTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDM 349

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTW 142
           Y+KCG +  A A+ D M ++D +S++++++G+  +G  ++++ +F+ M +    P   T+
Sbjct: 350 YSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTF 409

Query: 143 NAVIS-----GLVQNNRHEAVLDLVREMQASGVRPNA 174
            AV++     GLV + R      ++  MQ  GV P A
Sbjct: 410 LAVLTACSHAGLVSDGRR-----ILESMQDHGVEPRA 441



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDI+SWNSM+ G+S  G  ++  A+F  ML   V +P  VT ++VL AC  +  +  
Sbjct: 366 MLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEV-QPTYVTFLAVLTACSHAGLVSD 424

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV----SYSAIIS 116
           G  +   + +  ++       A I    +   L+ A   +  +S K  +    S+ A++ 
Sbjct: 425 GRRILESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLG 484

Query: 117 GYMVHGFVEKAMD----LFQV 133
              VHG +E A +    LFQ+
Sbjct: 485 ACHVHGNIEIAEEVAEALFQL 505


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 264/460 (57%), Gaps = 38/460 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V+WN+M++ + Q G  +E   L  EM     +  D VT+ ++L           
Sbjct: 383 MLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFM-VDSVTLTALLSLASNLRSQEI 441

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS--DKDEVSYSAIISGY 118
           G + H ++I   I+ +  +   LI MYAK G +  A+ L ++ S  D+DE +++A+I+GY
Sbjct: 442 GKQAHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGY 500

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G  E+   +F                               R+M    VRPNAVT++
Sbjct: 501 TQNGLSEEGFAVF-------------------------------RKMIEQNVRPNAVTLA 529

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    +    +  GK+IHG+A++   ++N++V TA++D Y+K+G +  A+ VF     +
Sbjct: 530 SILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEK 589

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + + +T +I +Y  HG   +A+SLF+ ML +GI+PD VTF A+LSAC+++GLVD+   IF
Sbjct: 590 NSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIF 649

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISG 357
            +M  +Y IQPS EHY C+  +L R  R+ EA EFV  +  + +  ++WG+LL    I G
Sbjct: 650 QSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHG 709

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
           + ELGK V + L E+E  +  TG +++++N+Y+  G WD  DRVR++M++ GL K  G S
Sbjct: 710 EFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCS 769

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           W+E +G +  F+++D    +  +IY +LE+L   M++ GY
Sbjct: 770 WVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGY 809



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 192/406 (47%), Gaps = 37/406 (9%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+   WN+MI GY Q     E   LF +++ S     D VT +S L A  Q   +  G 
Sbjct: 283 ERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGR 342

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H ++++S   + + I NA+I MY++CGS+  +  +   M ++D V+++ ++S +    
Sbjct: 343 QLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAF---- 398

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                                      VQN   +  L LV EMQ  G   ++VT++++ S
Sbjct: 399 ---------------------------VQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLS 431

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL 240
           L S+  + + GK+ H Y +++       +   +ID YAK+G +  AQ++F++     R  
Sbjct: 432 LASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDE 490

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+I+ Y  +G + +  ++F +M+   ++P+ VT  ++L AC   G +     I + 
Sbjct: 491 ATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQI-HG 549

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL-YGASISGDV 359
            + +  +  +V     ++ + S++  I+ A    ++   K S      +L YG    G+ 
Sbjct: 550 FAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGER 609

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            L  F       I+P++   ++ + +  S AG  DE  R+ + M+ 
Sbjct: 610 ALSLFHAMLGSGIKPDSV-TFVAILSACSYAGLVDEGLRIFQSMER 654



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 39/288 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--- 57
           M KR++V+WN+MI+ Y +     E   +FR M+   + RP  V+ V+V  A  + +D   
Sbjct: 178 MRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGI-RPTPVSFVNVFPAVWRMNDYDN 236

Query: 58  --IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +++G+ V    + S    D ++ ++ I MYA+ G +D+AR + D   +++   ++ +I
Sbjct: 237 ANVLYGLVVK---LGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
            GY+ +    +A+DLF                              V+ M++     + V
Sbjct: 294 GGYVQNNCPIEAIDLF------------------------------VQVMESEQFXLDDV 323

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T  S  +  S    L  G+++H Y +K+     + +  AII  Y++ G +  + +VF   
Sbjct: 324 TFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
             R ++ W  ++SA+  +G   + + L  EM   G   D VT TA+LS
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLS 431



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 21/295 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +   V WN++I G+       +    +  M  SP  + D  T  S L+AC Q+  +  
Sbjct: 63  IPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKL 122

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V+ SH      + N+L+ MY+ C +               EV Y      +  
Sbjct: 123 GKALHCHVLRSHFGSSRIVYNSLLNMYSTCLT---------------EVPYLGTAYDFNN 167

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V +   +F  M++  +  WN +IS  V+  R      + R M   G+RP  V+  ++
Sbjct: 168 CDLVRR---VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224

Query: 181 FSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           F      ++      ++G  VK  + Y  + +V ++ I  YA+ G +  A+ +FD    R
Sbjct: 225 FPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLER 284

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVD 292
           +  +W  +I  Y  +    +A+ LF +++ +     D VTF + L+A +    +D
Sbjct: 285 NTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLD 339



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISS 179
            G   +A+ LF  + RP    WN +I G + NN   +A+L   R   +   + ++ T SS
Sbjct: 50  QGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSS 109

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA----KTGFLHGA------- 228
                +   +LK GK +H + +++ +  +  V  ++++ Y+    +  +L  A       
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169

Query: 229 --QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
             +RVFD  + R+++ W  +IS Y       +A  +F  M+  GI+P PV+F  V  A
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 253/456 (55%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+IVSW SMI+GY Q G   E   +F +M    V +PD + +VSVL+A     D+  
Sbjct: 230 LDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNV-KPDWIALVSVLRAYTDVEDLEQ 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  ++ +  +  +L  MYAKCG +  AR+  D+M                 
Sbjct: 289 GKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM----------------- 331

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         + P +  WNA+ISG  +N      + L +EM +  +R +++T+ S 
Sbjct: 332 --------------EIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSA 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L   K +  Y  K  Y  +++V TA+ID +AK G +  A+ VFDR   + +
Sbjct: 378 ILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDV 437

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I  Y  HG    A+ LF  M   G+ P+ VTF  +L+AC HSGLV++ W++F++
Sbjct: 438 VVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHS 497

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+   +HYAC+V +L R+  ++EA +F++ MP++P   VWGALL    I   V 
Sbjct: 498 MK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVT 556

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG++  + LF ++P NTG+Y+ ++NLY+ +  WD   +VR  M+E GL+K  G S IE +
Sbjct: 557 LGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEIN 616

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G LQ+F   D S  + ++I+  LE L   ++E G++
Sbjct: 617 GKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFI 652



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 32/286 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN++I GYS   F+ +   ++  M  S V  PDG T+  VL+AC     +  G  VH  +
Sbjct: 137 WNAIIRGYSSHNFFGDAIEMYSRMQASGV-NPDGFTLPCVLKACSGVPVLEVGKRVHGQI 195

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
                + D+++ N L+ +YAKCG ++ AR + + + D++ VS                  
Sbjct: 196 FRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVS------------------ 237

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                        W ++ISG  QN      L +  +M+   V+P+ + + S+   ++   
Sbjct: 238 -------------WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVE 284

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ GK IHG  VK   +    +  ++   YAK G +  A+  FD+ +  ++++W A+IS
Sbjct: 285 DLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMIS 344

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            YA +G  ++AV LF EM++  I+ D +T  + + ACA  G +D A
Sbjct: 345 GYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA 390



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 116 SGYMVHGFVEK---------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           SG++V  FV           A  +F     P +  WNA+I G   +N     +++   MQ
Sbjct: 102 SGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQ 161

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           ASGV P+  T+  +    S    L+ GK +HG   +  ++ +++V   ++  YAK G + 
Sbjct: 162 ASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVE 221

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ VF+    R+++ WT++IS Y  +G   +A+ +F +M    ++PD +   +VL A  
Sbjct: 222 QARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYT 281

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
               +++   I   +  + G++   +    +  + ++  ++  A  F  +M + P+  +W
Sbjct: 282 DVEDLEQGKSIHGCVV-KMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMW 339

Query: 347 GALLYGASISG 357
            A++ G + +G
Sbjct: 340 NAMISGYAKNG 350



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%)

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           SL  H  + +   +IH   V +    + ++ T  ++     G +  A++VFD F   S+ 
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF 135

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           +W AII  Y++H     A+ +++ M  +G+ PD  T   VL AC+
Sbjct: 136 LWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACS 180


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/438 (36%), Positives = 237/438 (54%), Gaps = 35/438 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSW ++I  +++ G Y      F EM +   LR DG T+V VL AC    D+  G +
Sbjct: 175 RDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLR-LRADGRTLVVVLSACSNLGDLNLGQK 233

Query: 64  VHNFVIESHIKM--DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           VH++ I  +I M  D+++ NAL+ MY KC  L+ A  + DEM  K+ V            
Sbjct: 234 VHSY-IRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVV------------ 280

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                              TWNA+ISGL    R+   LD  R MQ  GV+P+ VT+  + 
Sbjct: 281 -------------------TWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVL 321

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  ++   L+ GK +H Y  +N    + +V  A++D YAK G +  A RVF+  K R + 
Sbjct: 322 NSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVY 381

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            +TA+I   A HG+A+ A  +F+EM   GI+P+ VTF  +L AC+H GLV +    F  M
Sbjct: 382 SYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQM 441

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S +Y ++P  EHY CM+ +L RA  + EA E + KM ++P     GALL    I G+V++
Sbjct: 442 SDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDI 501

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+ V   L E++P+  G YI+M NLYS   RW +A ++R+ MK   + K PG S IE  G
Sbjct: 502 GESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDG 561

Query: 422 GLQSFVAKDTSGDKSEQI 439
            +  F   D S  +S+ I
Sbjct: 562 VVHEFRKGDKSHPRSKVI 579



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 180/411 (43%), Gaps = 82/411 (19%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYA 96
           L PDG T+  VL+A      I  G ++H   I++  +  ++++ N L+ +Y+ CGS+   
Sbjct: 106 LEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDV 165

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + + DE   +D VS++ +I  +   G   +A++ F                         
Sbjct: 166 QKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFM------------------------ 201

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATA 214
                  EM    +R +  T+  + S  S+  +L  G+++H Y +++  D   +++V  A
Sbjct: 202 -------EMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY-IRHYIDMKADVFVGNA 253

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           ++D Y K   L+ A +VFD    ++++ W A+IS  A  G   +A+  F  M + G++PD
Sbjct: 254 LLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPD 313

Query: 275 PVTFTAVLSACAHSGL-----------------------------------VDKAWDIFN 299
            VT   VL++CA+ G+                                   +D+A+ +F 
Sbjct: 314 EVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFE 373

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASIS 356
           +M      +  V  Y  M+  L+     + A +  S+M    ++P+   +  LL   S  
Sbjct: 374 SMK-----RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHG 428

Query: 357 GDVELGK---FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           G V  GK   F     +++ P+   +Y  M +L  +AG   EA+ +  +M+
Sbjct: 429 GLVAEGKKYFFQMSDKYKLRPQ-AEHYGCMIDLLGRAGLVKEAEEIIHKME 478



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 1/155 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++V+WN+MI+G +  G Y E    FR M +  V +PD VT+V VL +C     +  
Sbjct: 274 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGV-KPDEVTLVGVLNSCANLGVLEI 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++  +HI  D ++ NAL+ MYAKCGS+D A  + + M  +D  SY+A+I G  +
Sbjct: 333 GKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLAL 392

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           HG    A  +F  M R G+        GL+    H
Sbjct: 393 HGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSH 427


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/411 (36%), Positives = 243/411 (59%), Gaps = 4/411 (0%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           +PD  T   VL+   + SD+ FG ++H  V+       + +   LI MY  CG L  AR 
Sbjct: 113 KPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARK 172

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK---RPGLSTWNAVISGLVQNNRH 155
           + DEM  KD   ++A+++GY   G +++A  L ++M    R  +S W  VISG  ++ R 
Sbjct: 173 MFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVS-WTCVISGYAKSGRA 231

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
              +++ + M    V P+ VT+ ++ S  +   +L+ G+ I  Y      +R + +  A+
Sbjct: 232 SEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAV 291

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           ID YAK+G +  A  VF+    R+++ WT II+  A HG  ++A+++FN M+  G++P+ 
Sbjct: 292 IDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           VTF A+LSAC+H G VD    +FN+M  +YGI P++EHY CM+ +L RA ++ EA E + 
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
            MP K +A +WG+LL  +++  D+ELG+     L ++EP N+GNY+++ANLYS  GRWDE
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDE 471

Query: 396 ADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           +  +R  MK  G+ K+ G S IE    +  F++ D +  + E+I+ IL+ +
Sbjct: 472 SRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEM 522



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 160/382 (41%), Gaps = 75/382 (19%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV---QNNRHEAVLDL 161
           ++D ++ +  I      G +  A  +F     P     N +I  L    + N H   + +
Sbjct: 44  NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITV 103

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
            R++ A   +P+  T   +  +    S++  G++IHG  V   +D +++V T +I  Y  
Sbjct: 104 YRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFS 163

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAII---------------------------------S 248
            G L  A+++FD    + + +W A++                                 S
Sbjct: 164 CGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVIS 223

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----------------HSGLVD 292
            YA  G AS+A+ +F  ML   ++PD VT  AVLSACA                H G+ +
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGM-N 282

Query: 293 KAWDIFNAMSGQYG----IQPSVEHYAC-----------MVGVLSRARRISEATEFVSKM 337
           +A  + NA+   Y     I  +++ + C           ++  L+     +EA    ++M
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342

Query: 338 ---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAG 391
               V+P+   + A+L   S  G V+LGK + + +   + I P N  +Y  M +L  +AG
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHP-NIEHYGCMIDLLGRAG 401

Query: 392 RWDEADRVREQMKESGLAKIPG 413
           +  EAD V + M     A I G
Sbjct: 402 KLREADEVIKSMPFKANAAIWG 423



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 130/275 (47%), Gaps = 40/275 (14%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+ VSW  +I+GY++ G   E   +F+ ML   V  PD VT+++VL AC     +  G  
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMENV-EPDEVTLLAVLSACADLGSLELGER 271

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           + ++V    +   + + NA+I MYAK G++  A  + + +++++ V+++ II+G   HG 
Sbjct: 272 ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGH 331

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A+ +F                     NR          M  +GVRPN VT  +I S 
Sbjct: 332 GAEALAMF---------------------NR----------MVKAGVRPNDVTFIAILSA 360

Query: 184 FSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRS 239
            SH   +  GK +   +++++Y    NI     +ID   + G L  A  V     FK  +
Sbjct: 361 CSHVGWVDLGKRLFN-SMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANA 419

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
             IW ++++A   H D        +E++   ++P+
Sbjct: 420 -AIWGSLLAASNVHHDLELGERALSELIK--LEPN 451



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 29/250 (11%)

Query: 171 RPNAVTISS-----IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           R NA+++SS     + SL  H +NLK  K+ H Y +    +R+       I+  +  G L
Sbjct: 4   RINALSLSSGLNWFVTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHL 63

Query: 226 HGAQRVF------DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
             A  VF      + +   ++I   +++    AH   S A++++ ++     +PD  TF 
Sbjct: 64  RYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH---SIAITVYRKLWALCAKPDTFTFP 120

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQ---YGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
            VL        V   W     + GQ   +G   SV     ++ +      + +A +   +
Sbjct: 121 FVLKIAVR---VSDVW-FGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDE 176

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP---ENTGNYIIMANLYSQAGRW 393
           M VK    VW ALL G    G+++  +     L E+ P    N  ++  + + Y+++GR 
Sbjct: 177 MLVK-DVNVWNALLAGYGKVGEMDEAR----SLLEMMPCWVRNEVSWTCVISGYAKSGRA 231

Query: 394 DEADRVREQM 403
            EA  V ++M
Sbjct: 232 SEAIEVFQRM 241



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +++R++V+W ++IAG +  G   E  A+F  M+ + V RP+ VT +++L AC     +  
Sbjct: 311 VNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGV-RPNDVTFIAILSACSHVGWVDL 369

Query: 61  GMEVHNFVIES---HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G  + N +      H  ++ + C  +I +  + G L  A  ++  M  K   + + ++++
Sbjct: 370 GKRLFNSMRSKYGIHPNIEHYGC--MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLA 427

Query: 117 GYMVHGFVE 125
              VH  +E
Sbjct: 428 ASNVHHDLE 436


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 261/455 (57%), Gaps = 6/455 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN +I+ Y   G +E+   +F+ M     L+ D  T+VS L AC    ++  
Sbjct: 107 MPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEI 166

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  ++ FV+ +  +M + I NAL+ M+ KCG LD ARA+ D M DK+   +++++ GY+ 
Sbjct: 167 GERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVS 225

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +++A  LF+      +  W A+++G VQ NR +  L+L R MQ +G+RP+   + S+
Sbjct: 226 TGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSL 285

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IHGY  +NR   +  V TA++D YAK G +  A  VF   K R  
Sbjct: 286 LTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDT 345

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT++I   A +G + +A+ L+ EM N G++ D +TF AVL+AC H G V +   IF++
Sbjct: 346 ASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHS 405

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
           M+ ++ +QP  EH +C++ +L RA  + EA E + KM  +       V+ +LL  A   G
Sbjct: 406 MTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYG 465

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           +V++ + V + L ++E  ++  + ++A++Y+ A RW++   VR +MK+ G+ K PG S I
Sbjct: 466 NVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525

Query: 418 ECSGGLQSFVAKDT--SGDKSEQIYLILERLLGLM 450
           E  G    F+  D   S  K ++I  +L +   LM
Sbjct: 526 EIDGVGHEFIVGDDLLSHPKMDEINSMLHQTTNLM 560



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 173/384 (45%), Gaps = 67/384 (17%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++ +N M+   + G  + +  ALF E L    L PD  T+  VL++ G+   ++ G +VH
Sbjct: 11  LLMYNKMLKSLADGKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVH 69

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            + +++ ++ D ++ N+L+GMYA  G ++    + DEM  +D VS               
Sbjct: 70  GYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVS--------------- 114

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSLF 184
                           WN +IS  V N R E  + + + M Q S ++ +  TI S  S  
Sbjct: 115 ----------------WNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSAC 158

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS----- 239
           S   NL+ G+ I+ + V   ++ ++ +  A++D + K G L  A+ VFD  + ++     
Sbjct: 159 SALKNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWT 217

Query: 240 --------------------------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
                                     +++WTA+++ Y       +A+ LF  M   GI+P
Sbjct: 218 SMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRP 277

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D     ++L+ CA +G +++   I   ++        V   A +V + ++   I  A E 
Sbjct: 278 DNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTA-LVDMYAKCGCIETALEV 336

Query: 334 VSKMPVKPSAKVWGALLYGASISG 357
             ++  + +A  W +L+YG +++G
Sbjct: 337 FYEIKERDTAS-WTSLIYGLAMNG 359



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 131/282 (46%), Gaps = 17/282 (6%)

Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
           +++ P L  +N ++  L        VL L  E++  G+ P+  T+  +         +  
Sbjct: 5   LLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           G+++HGYAVK   + + YV+ +++  YA  G +    +VFD    R ++ W  +IS+Y  
Sbjct: 65  GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124

Query: 253 HGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
           +G    A+ +F  M   + ++ D  T  + LSAC+    ++    I+  +  ++ +   +
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRI 184

Query: 312 EH----YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
            +      C  G L +AR + ++           + K W ++++G   +G ++  +    
Sbjct: 185 GNALVDMFCKCGCLDKARAVFDSMR-------DKNVKCWTSMVFGYVSTGRIDEARV--- 234

Query: 368 HLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            LFE  P ++   +  M N Y Q  R+DEA  +   M+ +G+
Sbjct: 235 -LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGI 275


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 259/466 (55%), Gaps = 40/466 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN--SPVLRPDGVTVVSVLQACGQSSDI 58
           + +R +VSWN MI    Q G  E+   +F EM    SP       TV SV+ AC    D+
Sbjct: 59  IPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPC---SEFTVSSVVCACAAKGDV 115

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            F  ++H F I++ +  D+++  ALI +YAKCGS++ A  + + M ++++V         
Sbjct: 116 FFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDV--------- 166

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                 TW+++++G VQN  +E  L L    +  G+  N   IS
Sbjct: 167 ----------------------TWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMIS 204

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +  + L  G+++H    +  +  N +VA+A++D YAK G +  A  +F   + +
Sbjct: 205 SVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKK 264

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           ++++W AIIS +A H  +S+ ++LF EM   G+QPD VT+ AVLSAC H GLVDK    F
Sbjct: 265 NVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYF 324

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M+ ++ + P+V HY+CMV +L R   + EA E ++KMP   +A +WG+LL    I G+
Sbjct: 325 DLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGN 384

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +EL +    +LFE+EP+  GNY+++AN Y+ + +W+EA + R+ +K S + K  G+SWIE
Sbjct: 385 LELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKERGKSWIE 444

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
               + +F+A + +  +   IYL L  LL    EE   L+++ E +
Sbjct: 445 IKDKVHTFMAGERTHPRITDIYLELNNLL----EEMTKLVNKAETD 486



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 143/306 (46%), Gaps = 33/306 (10%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+LQ C ++ + + G   H  VI   ++ D    N L+ MY+KCG +  A  + DE+ ++
Sbjct: 3   SLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPER 62

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
             VS++ +I   + +G  EKA+D+F                                EMQ
Sbjct: 63  SMVSWNIMIGTCVQNGEEEKAIDIF-------------------------------LEMQ 91

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             G   +  T+SS+    +   ++   +++H +A+K   D +++V TA+ID YAK G + 
Sbjct: 92  REGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIE 151

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A  VF+    R+ + W++I++ +  +    + + LF      G++ +    ++V+ ACA
Sbjct: 152 DASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACA 211

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
               + +   + +A+  + G  P+    + +V + ++   I EA      +  K +  +W
Sbjct: 212 GLAALIEGRQV-HAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIE-KKNVVLW 269

Query: 347 GALLYG 352
            A++ G
Sbjct: 270 NAIISG 275


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 250/468 (53%), Gaps = 37/468 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SW +MI G  Q G   E   LFR+M     +  D  T  SVL ACG    +  
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEG-MAMDQYTFGSVLTACGGLRALKE 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  +I S    ++++ +AL+ MY KC S+ YA A+   M++K+ VS          
Sbjct: 289 GKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVS---------- 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A++ G  QN   E  + +  +MQ +G+ P+  T+ S+
Sbjct: 339 ---------------------WTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSV 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + H  A+ +     I V+ A+I  Y K G +  + ++FD    R  
Sbjct: 378 ISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDE 437

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA++S YA  G A++ + LF  ML  G++PD VTF AVLSAC+ +GLV++    F +
Sbjct: 438 VSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFES 497

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P  +HY CM+ +  RA R+ EA  F++KMP  P +  W  LL    + G+ E
Sbjct: 498 MLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEE 557

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + L E++P+N   YI+++++Y+  G+W    ++R  M+E G  K PG SWI+  
Sbjct: 558 IGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYK 617

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
             +  F A D S   S+QIY  LE+L   M EEGYV     +L +VE+
Sbjct: 618 SKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVED 665



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 218/443 (49%), Gaps = 45/443 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWNS+I+GY   G   E    +  M+   VL  + +T  ++L        +  
Sbjct: 97  MPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +++      +++ ++L+ MYAK G +  A  + DE+ +++ V Y+ +I+G + 
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+ +  LF  MK     +W  +I+GL+QN      +DL R+M+  G+  +  T  S+
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSV 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +       LK GKEIH   +++ Y+ N++V +A++D Y K   +  A+ VF R   +++
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNV 336

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           + WTA++  Y  +G + +AV +F +M  NGI+PD  T  +V+S+CA+             
Sbjct: 337 VSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQ 396

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVE---------------HYACMVGVLSRARRISE 329
              SGL+     + NA+   YG   S+E                +  +V   ++  + +E
Sbjct: 397 ALVSGLISFI-TVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANE 455

Query: 330 ATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------NY 380
             +   +M V   KP A  + A+L   S +G VE G+      FE   ++ G      +Y
Sbjct: 456 TIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ----QYFESMLKDHGIIPFSDHY 511

Query: 381 IIMANLYSQAGRWDEADRVREQM 403
             M +L+ +AGR +EA     +M
Sbjct: 512 TCMIDLFGRAGRLEEAKNFINKM 534



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 192/428 (44%), Gaps = 48/428 (11%)

Query: 50  QACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV 109
           + C ++ +     ++H  +I+S    + ++ N LI  Y+K G++ YAR + D+M   +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           S++ ++S Y   G +    ++F +M      +WN++ISG V        +     M   G
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 170 V-RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           V   N +T S++  L S    +  G++IHG  VK  +   ++V ++++D YAK G +  A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 229 QRVFDRFKGRSLII-------------------------------WTAIISAYAAHGDAS 257
            +VFD  + R++++                               WT +I+    +G  +
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           +A+ LF +M   G+  D  TF +VL+AC     + +  +I + +  + G   +V   + +
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEI-HTLIIRSGYNHNVFVGSAL 311

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELGKFVCDHLFE-IEPE 375
           V +  + R +  A     +M  K +   W A+L G   +G   E  +  CD     IEP+
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANK-NVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPD 370

Query: 376 N-TGNYII--MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTS 432
           + T   +I   ANL S     +E  +   Q   SGL      S+I  S  L +   K  S
Sbjct: 371 DFTLGSVISSCANLAS----LEEGAQFHCQALVSGLI-----SFITVSNALITLYGKCGS 421

Query: 433 GDKSEQIY 440
            + S Q++
Sbjct: 422 IEDSNQLF 429


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 254/465 (54%), Gaps = 37/465 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+ SWN+M+ G++    Y E   LF  +++    + D +T  +  +A G    +  G ++
Sbjct: 464 DLASWNAMMHGFTVSDNYREALRLF-SLMHERGEKADQITFANAAKAAGCLVRLQQGKQI 522

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+     DL++ + ++ MY KCG +  AR + +++   D+V+              
Sbjct: 523 HAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVA-------------- 568

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            W  VISG V+N   E  L    +M+ +GV+P+  T +++    
Sbjct: 569 -----------------WTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKAC 611

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S  + L+ GK+IH   +K     + +V T+++D YAK G +  A  +F R   RS+ +W 
Sbjct: 612 SLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWN 671

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I   A HG+A +A++ FNEM + G+ PD VTF  VLSAC+HSGL   A+  F++M   
Sbjct: 672 AMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKT 731

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YG++P +EHY+C+V  LSRA  I EA + VS MP + SA ++  LL    + GD E G+ 
Sbjct: 732 YGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGER 791

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V + LF ++P ++  Y++++N+Y+ A +W+ A   R  MK   + K PG SWI+    + 
Sbjct: 792 VAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVH 851

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            FVA D S ++++ IY  +E ++  ++EEGYV      L ++EEE
Sbjct: 852 LFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEE 896



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 173/362 (47%), Gaps = 37/362 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIV 59
           M + D++SWN++I+G ++ G  E    LF ++L S +L PD  T+ SVL+AC        
Sbjct: 358 MKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL-PDQFTITSVLRACSSLEESYC 416

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G +VH   +++ I +D ++  ALI +Y+K G ++ A  L       D  S++A++ G+ 
Sbjct: 417 VGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT 476

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           V     +A+ LF +M                    HE            G + + +T ++
Sbjct: 477 VSDNYREALRLFSLM--------------------HE-----------RGEKADQITFAN 505

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                     L+ GK+IH   +K R+  +++V + I+D Y K G +  A++VF++     
Sbjct: 506 AAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPD 565

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF- 298
            + WT +IS    +G+  +A+  +++M   G+QPD  TF  ++ AC+    +++   I  
Sbjct: 566 DVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHA 625

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           N M       P V     +V + ++   I +A     +M  + S  +W A++ G +  G+
Sbjct: 626 NIMKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMIVGLAQHGN 682

Query: 359 VE 360
            E
Sbjct: 683 AE 684



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 50/334 (14%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKA------LFREMLNSPVLRPDGVTVVSVLQACGQS 55
           S RD+V++N+++A Y+  G   + +       +FR +L   V+     T+  + + C   
Sbjct: 77  SDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR-LLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
                   +  + ++  ++ D+++  AL+ +YAK   +  AR L D M  +D V ++ ++
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGL------------------------------------ 139
             Y+  G  ++ + LF    R GL                                    
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFV 255

Query: 140 -------STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
                  + WN  +S  +Q       +D  R+M  S V  +++T   I S+ +  ++L+ 
Sbjct: 256 CDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLEL 315

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           GK+IHG  V+  +D+ + VA + I+ Y K G ++ A+R+F + K   LI W  +IS  A 
Sbjct: 316 GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            G    ++ LF ++L +G+ PD  T T+VL AC+
Sbjct: 376 SGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 165/373 (44%), Gaps = 38/373 (10%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMS 104
           S+L+     SD++ G   H  ++ S +  D ++ N LI MYAKCGSL  AR L D    S
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           D+D V+Y+AI++ Y   G      +L  V K                   HEA   + R 
Sbjct: 78  DRDLVTYNAILAAYAHTG------ELHDVEKT------------------HEA-FHIFRL 112

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           ++ S +     T+S +F L   + +    + + GYAVK     +++VA A+++ YAK   
Sbjct: 113 LRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQR 172

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A+ +FDR   R +++W  ++ AY   G   + + LF+    +G++PD V+   +L  
Sbjct: 173 IREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMG 232

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS------KMP 338
                + ++  +   A + +  +             LS   +  E  E V       K  
Sbjct: 233 VGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSR 292

Query: 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI---EPENTGNYIIMANLYSQAGRWDE 395
           V   +  +  +L   +    +ELGK +   +      +  +  N  I  N+Y +AG  + 
Sbjct: 293 VPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAI--NMYVKAGSVNY 350

Query: 396 ADRVREQMKESGL 408
           A R+  QMKE  L
Sbjct: 351 ARRMFGQMKEVDL 363



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 143/326 (43%), Gaps = 53/326 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V WN M+  Y + G  +E   LF     S  LRPD V+V ++L   G+ +  VF
Sbjct: 183 MPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSG-LRPDCVSVRTILMGVGKKT--VF 239

Query: 61  GMEVHN--------FVIESHIKMDLWICNALIGMYAKCG----SLDYARALLDEMSDKDE 108
             E+          FV +    + +W  N  +  Y + G    ++D  R ++      D 
Sbjct: 240 ERELEQVRAYATKLFVCDDDSDVTVW--NKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDS 297

Query: 109 VSYSAIIS----------GYMVHGFVEK-------------------------AMDLFQV 133
           ++Y  I+S          G  +HG V +                         A  +F  
Sbjct: 298 LTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQ 357

Query: 134 MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF-SNLKG 192
           MK   L +WN VISG  ++   E  L L  ++  SG+ P+  TI+S+    S    +   
Sbjct: 358 MKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCV 417

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           G+++H  A+K     + +V+TA+ID Y+K G +  A+ +F    G  L  W A++  +  
Sbjct: 418 GRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTV 477

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTF 278
             +  +A+ LF+ M   G + D +TF
Sbjct: 478 SDNYREALRLFSLMHERGEKADQITF 503



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 19/247 (7%)

Query: 171 RPNAVTISSI----FSLFSHF---SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           R  +V+ SS+    FS+  H    S+L  GK  H   V +  + + YV   +I  YAK G
Sbjct: 3   RKCSVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCG 62

Query: 224 FLHGAQRVFD--RFKGRSLIIWTAIISAYAAHGD------ASKAVSLFNEMLNNGIQPDP 275
            L  A+++FD      R L+ + AI++AYA  G+        +A  +F  +  + +    
Sbjct: 63  SLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTR 122

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
            T + +   C   G    A +     + + G+Q  V     +V + ++ +RI EA     
Sbjct: 123 HTLSPLFKLCLLYG-SPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFD 181

Query: 336 KMPVKPSAKVWGALL--YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           +MPV+    +W  ++  Y    +GD  LG F   H   + P+      I+  +  +    
Sbjct: 182 RMPVR-DVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFE 240

Query: 394 DEADRVR 400
            E ++VR
Sbjct: 241 RELEQVR 247



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS 55
           M+ R +  WN+MI G +Q G  EE    F EM  S  + PD VT + VL AC  S
Sbjct: 662 MNTRSVALWNAMIVGLAQHGNAEEALNFFNEM-KSRGVTPDRVTFIGVLSACSHS 715


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 263/471 (55%), Gaps = 19/471 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----LRPDGVTVVSVLQACGQSS 56
           M  +D+VSWNSM+ GY++ G        F EM    V    L  DG   V  L     +S
Sbjct: 53  MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDL-----NS 107

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
              F  ++ N    S + M   +C      +A+ G +  AR L D+M  ++ V+++A+I+
Sbjct: 108 SWEFFEKIPNPNTVSWVTM---LCG-----FARFGKIAEARRLFDQMPIRNVVAWNAMIA 159

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
            Y+ +  V++A+ LF  M      +W  VI+G V+  + +    L+ +M     +P+  T
Sbjct: 160 AYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQST 218

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +   S  +H + L+ GK++H   +K+ Y  +++V+ A+I  YAK G +  A+ +F    
Sbjct: 219 FACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDID 278

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
              ++ W ++I+AYA +G+  +A+ LF++M   G+ PD VTF  +LSAC+H GL+D+   
Sbjct: 279 HFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLK 338

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F  M   Y I+P  EHYACMV +L RA R+ EA + V  M +  +A +WGALL    I 
Sbjct: 339 LFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIH 398

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G++EL KF  + L E EP  T NY++++N+ ++AGRWDE  RVR  MKE G  K PG SW
Sbjct: 399 GNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSW 458

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLD-EVEEESA 466
           IE    + +F+++D +  ++ ++  IL  L   MR  G + L+ +V +E A
Sbjct: 459 IELQNRVHAFLSEDPAHPRAVELCHILRSLTAHMRNTGDMPLELDVTKEVA 509



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 158/370 (42%), Gaps = 46/370 (12%)

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           CNA++  YAK    D AR L D M  KD VS++++++GY  +G +   +  F+ M    +
Sbjct: 30  CNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV 89

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            +WN ++ G V+     +  +   ++      PN V+  ++   F+ F  +   + +   
Sbjct: 90  VSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRL--- 142

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
                  RN+    A+I  Y +   +  A  +F     ++ I WT +I+ Y   G   +A
Sbjct: 143 -FDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEA 201

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSG----------LVDK---AWDIF--NAMSGQ 304
             L N+M     +PD  TF   LS+CAH            LV K   A D+F  NA+   
Sbjct: 202 RQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITM 260

Query: 305 YG----------IQPSVEHY-----ACMVGVLSRARRISEATEFVSKMPVK---PSAKVW 346
           Y           +   ++H+       ++   +      EA +   KM V+   P    +
Sbjct: 261 YAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTF 320

Query: 347 GALLYGASISGDVELG--KFVCD-HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             +L   S  G ++ G   F C    + IEP    +Y  M +L  +AGR +EA ++   M
Sbjct: 321 VGILSACSHVGLIDQGLKLFKCMVQAYNIEPL-AEHYACMVDLLGRAGRLEEAFQLVRGM 379

Query: 404 KESGLAKIPG 413
           K +  A I G
Sbjct: 380 KINANAGIWG 389



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 15/235 (6%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           +I  Y + G L  AR L + +  K + V  +A+++GY  +   ++A  LF  M    L +
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN++++G  +N      L    EM    V    V+ + +   F    +L    E      
Sbjct: 61  WNSMLTGYTRNGEMRLGLQFFEEMAERDV----VSWNLMVDGFVEVGDLNSSWEF----F 112

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           +   + N      ++  +A+ G +  A+R+FD+   R+++ W A+I+AY  +    +A+S
Sbjct: 113 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAIS 172

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
           LF EM     + + +++T V++     G +D+A  + N M   Y  +P    +AC
Sbjct: 173 LFMEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQMP--YRNKPDQSTFAC 221



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 17/201 (8%)

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
           Y  N     A++  YAK      A+R+FD    + L+ W ++++ Y  +G+    +  F 
Sbjct: 23  YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFE 82

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           EM     + D V++  ++      G ++ +W+ F  +       P+   +  M+   +R 
Sbjct: 83  EM----AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPN-----PNTVSWVTMLCGFARF 133

Query: 325 RRISEATEFVSKMPVKPSAKVWGALL--YGASISGDVELGKFVCDHLFEIEPENTGNYII 382
            +I+EA     +MP++ +   W A++  Y  +   D  +  F+     E+  +N+ ++  
Sbjct: 134 GKIAEARRLFDQMPIR-NVVAWNAMIAAYVQNCHVDEAISLFM-----EMPEKNSISWTT 187

Query: 383 MANLYSQAGRWDEADRVREQM 403
           + N Y + G+ DEA ++  QM
Sbjct: 188 VINGYVRMGKLDEARQLLNQM 208


>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
          Length = 806

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/490 (32%), Positives = 270/490 (55%), Gaps = 44/490 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V+WN +I+GY Q G  E+   + + ++    L+ D VT+ +++ A  ++ +   
Sbjct: 310 MIGKDVVTWNLLISGYVQQGLVEDAIRMCK-LMRLEKLKFDCVTLSTLMSAAARTQNSKL 368

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV  + I    + D+ + + +I MYAKCGS+  A+ + D    KD + ++ +++ Y  
Sbjct: 369 GKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAE 428

Query: 121 HGFVEKAMDLFQVMKR---------------------------------------PGLST 141
            G   +A+ LF  M+                                        P L +
Sbjct: 429 SGLSGEALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVS 488

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           W  +++GLVQN   E  +  +R+MQ SG+RPN  +I+   S  ++ ++L  G+ +HGY +
Sbjct: 489 WTTMMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLASLHLGRSVHGYII 548

Query: 202 KNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +N+ +  ++ + TA+ID YAK G +  A++VF R     L ++ A+ISAYA  G+  +A+
Sbjct: 549 RNQLHSSSVSIETALIDMYAKCGDISKAEKVFKRKSYSELPLFNAMISAYALSGNVKEAI 608

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            L+  + + GI+PD +TFT VLSAC H+G +++A +IF+ M  ++G++P +EHY  MV +
Sbjct: 609 DLYRSLEDMGIKPDNITFTNVLSACNHAGDINQAIEIFSDMVSKHGMEPCLEHYGLMVDL 668

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L+ A    +A   + +MP KP A++  +LL   +     EL  ++   L E EP+N+GNY
Sbjct: 669 LASAGETEKALRLMEEMPYKPDARMIQSLLVTCNEEHKTELVDYLSRQLLESEPDNSGNY 728

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS---FVAKDTSGDKSE 437
           + ++N Y+  G WDE  ++RE MK+ GL K PG SWI+  G  +    FVA D +  ++ 
Sbjct: 729 VTISNAYAGEGSWDEVVKMREMMKDKGLKKKPGCSWIQIKGXXEEVHVFVANDKTHLRNN 788

Query: 438 QIYLILERLL 447
           +I  +L  LL
Sbjct: 789 EIRRMLALLL 798



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 202/417 (48%), Gaps = 41/417 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    V  P  VTV + L A      +  
Sbjct: 209 IPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGV-EPTRVTVSTCLSASANMCGVGE 267

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   + + ++MD  +  +++  Y K G ++YA  + D M  KD V           
Sbjct: 268 GKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKDVV----------- 316

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    E  + + + M+   ++ + VT+S++
Sbjct: 317 --------------------TWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTL 356

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   N K GKE+  Y +++ ++ +I +A+ +ID YAK G +  A+RVFD    + L
Sbjct: 357 MSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDL 416

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF EM    + P+ +T+  ++ +   +G VD+A ++F  
Sbjct: 417 ILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKEMFLQ 476

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  L +     EA  ++ KM    ++P+       L   +   
Sbjct: 477 MQSS-GIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLA 535

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMA--NLYSQAGRWDEADRVREQMKESGLAKIP 412
            + LG+ V  ++   +  ++   I  A  ++Y++ G   +A++V    K    +++P
Sbjct: 536 SLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCGDISKAEKV---FKRKSYSELP 589



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 198/430 (46%), Gaps = 53/430 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML   +  PD   V +V +ACG      FG  
Sbjct: 110 RNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIF-PDNFVVPNVCKACGALQWSGFGRG 168

Query: 64  VHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +V +S +  D +++ ++L  MY KCG LD AR + DE+ +++ V+            
Sbjct: 169 IHGYVAKSGLYGDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA------------ 216

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              WNA++ G VQN  +E  + L+ +M+  GV P  VT+S+  S
Sbjct: 217 -------------------WNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLS 257

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++   +  GK+ H  AV N  + +  + T++++ Y K G +  A+ VFDR  G+ ++ 
Sbjct: 258 ASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKDVVT 317

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDI 297
           W  +IS Y   G    A+ +   M    ++ D VT + ++SA A +     G   + + I
Sbjct: 318 WNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKEVQCYCI 377

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            ++     G+  +V       G +  A+R+ ++T       V+    +W  LL   + SG
Sbjct: 378 RHSFESDIGLASTVIDMYAKCGSIVDAKRVFDST-------VQKDLILWNTLLAAYAESG 430

Query: 358 -DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
              E  +   +   E  P N  T N II++    + G+ DEA  +  QM+ SG+  +P  
Sbjct: 431 LSGEALRLFYEMQLESVPPNAITWNLIILSLF--RNGQVDEAKEMFLQMQSSGI--VPTL 486

Query: 415 -SWIECSGGL 423
            SW     GL
Sbjct: 487 VSWTTMMNGL 496



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 147/353 (41%), Gaps = 48/353 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D   G ++H  ++++      + +I   L+  YAKC + + A  L  ++  
Sbjct: 50  ILQGCVYERDFHTGRQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRV 109

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII      G  E A+  F  M +  +   N V+           V      +
Sbjct: 110 RNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIFPDNFVVPN---------VCKACGAL 160

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGF 224
           Q SG                       G+ IHGY  K+  Y   ++VA+++ D Y K G 
Sbjct: 161 QWSGF----------------------GRGIHGYVAKSGLYGDCVFVASSLADMYGKCGV 198

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A++VFD    R+++ W A++  Y  +G   +A+ L  +M   G++P  VT +  LSA
Sbjct: 199 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSA 258

Query: 285 CAH-----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
            A+      G    A  + N +     +  SV ++ C VG++       E  E V    +
Sbjct: 259 SANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLI-------EYAEMVFDRMI 311

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                 W  L+ G    G VE    +C  L  +E     + + ++ L S A R
Sbjct: 312 GKDVVTWNLLISGYVQQGLVEDAIRMC-KLMRLEKLKF-DCVTLSTLMSAAAR 362



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 19/240 (7%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR- 204
           +S L +N      L LV EM    VR        I     +  +   G++IH   +KN  
Sbjct: 16  VSSLCKNGEIREALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGRQIHARILKNGE 75

Query: 205 -YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            Y +N Y+ T ++  YAK      A+ +F + + R++  W AII      G A  A+  F
Sbjct: 76  FYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGF 135

Query: 264 NEMLNNGIQPDPVTFTAVLSACAH---SGLVDKAWDIFNAMSGQYG----IQPSVEHYAC 316
            EML + I PD      V  AC     SG   +    + A SG YG    +  S+     
Sbjct: 136 VEMLKDEIFPDNFVVPNVCKACGALQWSGF-GRGIHGYVAKSGLYGDCVFVASSLADMYG 194

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELGKFVCDHLFE-IEP 374
             GVL  AR++ +      ++P + +   W AL+ G   +G + E  + +CD   E +EP
Sbjct: 195 KCGVLDDARKVFD------EIPER-NVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEP 247


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/484 (34%), Positives = 262/484 (54%), Gaps = 36/484 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++  +N +I G  Q    E CKA+  + +M+ +   RP+  T  ++ +AC  +     G+
Sbjct: 94  NVFVFNIIIKGCLQNN--EPCKAICCYYKMMIAHA-RPNKFTYPTLFKACTAAEAAEEGV 150

Query: 63  EVHNFVIESHIKMDLWI------------------------------C-NALIGMYAKCG 91
           +VH  VI+  +  D+ I                              C NA+I  Y KCG
Sbjct: 151 QVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCG 210

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
            ++ A+ L   M DK+  S++ ++SG    G +E+A +LF  MK     +W+A+I G ++
Sbjct: 211 EVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIK 270

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
              ++  L++   MQ   +RP    +SS+ +  ++   L  G+ IH Y   N    +  +
Sbjct: 271 GGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVL 330

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
            TA++D YAK G L  A  VF++ + + +  W A+I     HG A  A+ LF +M     
Sbjct: 331 GTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKF 390

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
           +P+ +T   VLSACAHSG+VD+   IFN+M   YGI+P +EHY C+V +L RA  + EA 
Sbjct: 391 RPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAE 450

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
           E +  MP++PSA VWGALL      GDVELG+ V   L E+EP+N+G Y +++N+Y++AG
Sbjct: 451 EVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAG 510

Query: 392 RWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
           RWD+   VR+ MKE G+    G S I+  G +  F   D S  + + IYL+L+ ++  ++
Sbjct: 511 RWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLK 570

Query: 452 EEGY 455
            EG+
Sbjct: 571 MEGF 574



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 32/256 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ +SW++MI GY +GG+Y+E   +F  M    + RP    + SVL AC     +  
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEI-RPRKFVLSSVLAACANLGALDQ 311

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V  +    D  +  AL+ MYAKCG LD A  + ++M  K+  +++A+I G  +
Sbjct: 312 GRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGM 371

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A++LF  M++         + G++    H  ++D        G+R        I
Sbjct: 372 HGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVD-------EGLR--------I 416

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV-FDRFKGRS 239
           F+       ++ G E +G                ++D   + G L  A+ V +      S
Sbjct: 417 FNSMEEVYGIEPGMEHYG---------------CVVDLLGRAGLLGEAEEVMYSMPMEPS 461

Query: 240 LIIWTAIISAYAAHGD 255
             +W A++ A   HGD
Sbjct: 462 AAVWGALLGACRKHGD 477



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 134/285 (47%), Gaps = 17/285 (5%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ +  P +  +N +I G +QNN     +    +M  +  RPN  T  ++F   + 
Sbjct: 83  ALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTA 142

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               + G ++H + +K     ++++ +A I  Y   G + GA+R+        +I + A+
Sbjct: 143 AEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAM 202

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I  Y   G+   A  LF  M +  +     ++  ++S  A  G++++A ++FN M  +  
Sbjct: 203 IDGYLKCGEVEAAKELFWSMEDKNVG----SWNVMVSGMAKCGMIEEARELFNEMKEKNE 258

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGK 363
           I      ++ M+    +     EA E  + M    ++P   V  ++L   +  G ++ G+
Sbjct: 259 IS-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGR 313

Query: 364 FVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKE 405
           ++  H +     N+ + ++   + ++Y++ GR D A  V E+M++
Sbjct: 314 WI--HAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEK 356



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 19/220 (8%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGF--LHGAQRVFDRFKGRSLIIWTAIISAYA 251
           K++H  A++  + ++ YV+  ++  YA   F  L+ A +VF+     ++ ++  II    
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVDKAWDIFNAMSGQYG 306
            + +  KA+  + +M+    +P+  T+  +  AC        G+   A  I   +SG   
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 307 IQPS-VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           I+ + ++ Y     V    R + E                + A++ G    G+VE  K  
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDG--------NSDVICFNAMIDGYLKCGEVEAAK-- 216

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            +  + +E +N G++ +M +  ++ G  +EA  +  +MKE
Sbjct: 217 -ELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKE 255


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/490 (32%), Positives = 267/490 (54%), Gaps = 37/490 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M   ++  +N+MI G+ Q   Y+  +AL  + +ML + V  P   T  S+++ACG  S +
Sbjct: 40  MEIPNVFVYNAMIKGFVQS--YQPVQALELYVQMLRANV-SPTSYTFPSLIKACGLVSQL 96

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            F   VH  V  +     +++  +L+  Y+  G ++ +  + DEM ++D  +++ ++SG 
Sbjct: 97  RFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGL 156

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV---------------------------- 150
           +  G +  A  LF +M    L+TWN +I G                              
Sbjct: 157 VRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMIN 216

Query: 151 ---QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207
              QN R    L +  EM   G+ P+ VT++++ S  +H   L  GKEIH Y +++ ++ 
Sbjct: 217 CYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNL 276

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           ++Y+ +A+ID YAK G L  +  +F + + ++L  W ++I   A HG A +A+++F++M 
Sbjct: 277 DVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKME 336

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
              I+P+ VTF +VLSAC H+GL+++    F +M+  + I P VEHY CMV +LS+A  +
Sbjct: 337 REKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLL 396

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387
            EA + +  M ++P+A +WGALL G  +  ++E+ +   + L  +EP N+G Y ++ N+ 
Sbjct: 397 EEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMN 456

Query: 388 SQAGRWDEADRVREQMKESGLAK-IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           ++  RW EA ++R  MKE G+ K  PG SWIE    +  F A D S   S++IY +L  L
Sbjct: 457 AEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAEL 516

Query: 447 LGLMREEGYV 456
            G M+  GYV
Sbjct: 517 DGQMKLAGYV 526



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 19/312 (6%)

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           +++D    +  IS       ++ A+  +  M+ P +  +NA+I G VQ+ +    L+L  
Sbjct: 10  TNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYV 69

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           +M  + V P + T  S+       S L+  + +HG+  +N +D +++V T+++D Y+  G
Sbjct: 70  QMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMG 129

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +  + RVFD    R +  WT ++S     GD S A  LF+ M +  +     T+  ++ 
Sbjct: 130 RIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNL----ATWNTLID 185

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VK 340
             A    VD A  +FN M  +      +  +  M+   S+ +R  EA    ++M    + 
Sbjct: 186 GYARLREVDVAELLFNQMPAR-----DIISWTTMINCYSQNKRFREALGVFNEMAKHGIS 240

Query: 341 PSAKVWGALLYGASISGDVELGK----FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           P       ++   +  G ++LGK    ++  H F ++    G+ +I  ++Y++ G  D +
Sbjct: 241 PDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLD-VYIGSALI--DMYAKCGSLDRS 297

Query: 397 DRVREQMKESGL 408
             +  +++E  L
Sbjct: 298 LLMFFKLREKNL 309



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/249 (17%), Positives = 98/249 (39%), Gaps = 44/249 (17%)

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           ++   VK   +++ Y+    I   +    +  A   + + +  ++ ++ A+I  +     
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------------------------ 285
             +A+ L+ +ML   + P   TF +++ AC                              
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 286 -----AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
                +  G ++++  +F+ M      +  V  +  MV  L R   +S A      MP +
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMP-----ERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDR 175

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
             A  W  L+ G +   +V++ + + +   ++   +  ++  M N YSQ  R+ EA  V 
Sbjct: 176 NLA-TWNTLIDGYARLREVDVAELLFN---QMPARDIISWTTMINCYSQNKRFREALGVF 231

Query: 401 EQMKESGLA 409
            +M + G++
Sbjct: 232 NEMAKHGIS 240


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 242/465 (52%), Gaps = 33/465 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S++  V +N++++GY       +   LFR+M N   +  + VT++ ++ AC    ++  G
Sbjct: 104 SRKLTVCYNALVSGYVSNSKCSDAVLLFRQM-NEEGVPVNSVTLLGLIPACVSPINLELG 162

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H   ++     D+ + N  I MY KCGS++Y                          
Sbjct: 163 SSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNY-------------------------- 196

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                A  LF  M   GL +WNA++SG  QN     VL+L R M  +GV P+ VT+  + 
Sbjct: 197 -----AQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 251

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  ++      G E+      + +  N ++  A+I+ YA+ G L  AQ VFD    R+L+
Sbjct: 252 SSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 311

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTAII  Y  HG    AV LF EM+ +GI+PD   F  VLSAC+H+GL D+  + F  M
Sbjct: 312 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMM 371

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              Y ++P  EHY+CMV +L RA R+ EA   +  MP+KP   VWGALL    I  +VEL
Sbjct: 372 KRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVEL 431

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +   + + E+EPEN G Y++++N+YS A       R+R  MKE  L K PG S++E  G
Sbjct: 432 AELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKG 491

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLG-LMREEGYVLLDEVEEES 465
            +  F+  D +  +S++IY +LE L   +M+E G    D  EE +
Sbjct: 492 RVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESN 536



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 181/403 (44%), Gaps = 41/403 (10%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+ +   ++   + +  +L+ +ML     RP+  T    L++C   S  + G + H  +
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGYMVHGFVEK 126
            +     + ++   LI MY K   +D AR + +E   S K  V Y+A++SGY        
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGY-------- 118

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                                  V N++    + L R+M   GV  N+VT+  +      
Sbjct: 119 -----------------------VSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVS 155

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             NL+ G  +H   +K  +D ++ V    I  Y K G ++ AQ++FD    + LI W A+
Sbjct: 156 PINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAM 215

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-FNAMSGQY 305
           +S YA +G A+  + L+  M  NG+ PDPVT   VLS+CA+ G      ++ F   +  +
Sbjct: 216 VSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGF 275

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
              P + +   ++ + +R   +++A      MP + +   W A++ G  + G  E+   +
Sbjct: 276 TSNPFLNN--ALINMYARCGNLTKAQAVFDGMPER-TLVSWTAIIGGYGMHGHGEIAVQL 332

Query: 366 CDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
              +    IEP+ T  ++ + +  S AG  D+     + MK +
Sbjct: 333 FKEMIRSGIEPDGTA-FVCVLSACSHAGLTDQGLEYFKMMKRN 374



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 36/285 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + ++SWN+M++GY+Q G       L+R M  + V  PD VT+V VL +C        
Sbjct: 204 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV-HPDPVTLVGVLSSCANLGAQSV 262

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV   +  S    + ++ NALI MYA+CG+L  A+A+ D M ++  VS++AII GY +
Sbjct: 263 GHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGM 322

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E A+ LF                               +EM  SG+ P+      +
Sbjct: 323 HGHGEIAVQLF-------------------------------KEMIRSGIEPDGTAFVCV 351

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  SH      G E      +N + +      + ++D   + G L  AQ + +    + 
Sbjct: 352 LSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKP 411

Query: 240 L-IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
              +W A++ A   H +   A   F  ++   ++P+ + +  +LS
Sbjct: 412 DGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLS 454


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 259/462 (56%), Gaps = 3/462 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--LRPDGVTVVSVLQACGQSSDIVFGM 62
           +I ++N++I  Y+    +    ++F +ML      + PD  T   V+++C        GM
Sbjct: 72  NIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGM 131

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH  V +          NALI MY K G L  A  + +EMS +D +S++++I GY+  G
Sbjct: 132 QVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLG 191

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +  A +LF  M    + +W  +I+G  +   +   LD+ REMQ  G+ P+ ++I ++  
Sbjct: 192 QMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLP 251

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L+ GK IH YA KN + R   +  A+I+ YAK G +  A  +FD+   + +I 
Sbjct: 252 ACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVIS 311

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W+ +I   A HG   +A+ LF EM    + P+ +TF  VL AC+H+GL D+    F+ MS
Sbjct: 312 WSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMS 371

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y I+P +EHY C++ +L R+  + +A + +SKMP+KP +++W +LL    I  ++++ 
Sbjct: 372 ASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIA 431

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
                 L E+EPE +GNY+++AN+Y++ G+W++   +R+ ++   + K PG S IE +  
Sbjct: 432 VIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNV 491

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
           +Q FV+ D S   S++++ ILE  L L +     L++ VEE+
Sbjct: 492 VQEFVSSDDSKPFSQEVFWILEG-LALNQTRTNDLMEPVEED 532



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 32/191 (16%)

Query: 1   MSKRDIVSWNS-------------------------------MIAGYSQGGFYEECKALF 29
           MS RD++SWNS                               MI GY + G Y +   +F
Sbjct: 172 MSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVF 231

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           REM     + PD +++++VL AC Q   +  G  +H +  ++       ICNALI MYAK
Sbjct: 232 REM-QMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAK 290

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG +D A  L D++ +KD +S+S +I G   HG   +A+ LF+ M +  ++       G+
Sbjct: 291 CGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGV 350

Query: 150 VQNNRHEAVLD 160
           +    H  + D
Sbjct: 351 LLACSHTGLWD 361



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 138/350 (39%), Gaps = 81/350 (23%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM---QASGVRPNAVTIS 178
           G V  A  LF+ +  P + T+NA+I     N  H + + +  +M     + V P+  T  
Sbjct: 56  GHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFP 115

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL------------- 225
            +    +     + G ++HG   K   D +     A+ID Y K G L             
Sbjct: 116 FVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHR 175

Query: 226 ------------------HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
                             + A+ +FD    R+++ WT +I+ Y   G    A+ +F EM 
Sbjct: 176 DVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQ 235

Query: 268 NNGIQPDPVTFTAVLSACAH-----------------------------------SGLVD 292
             GI+PD ++  AVL ACA                                     G +D
Sbjct: 236 MVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCID 295

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWGAL 349
           +AW++F+ +     ++  V  ++ M+G L+   +  EA +    + K+ V P+   +  +
Sbjct: 296 EAWNLFDQL-----VEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGV 350

Query: 350 LYGASISG--DVELGKF-VCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           L   S +G  D  L  F V    + IEPE   +Y  + +L  ++G   +A
Sbjct: 351 LLACSHTGLWDEGLKYFDVMSASYHIEPE-IEHYGCLIDLLGRSGCLGQA 399



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 10/219 (4%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K+IH + VK    ++ ++ T ++D+    G +  A  +F +    ++  + AII  YA +
Sbjct: 27  KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHN 86

Query: 254 GDASKAVSLFNEML---NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
              S A+S+F +ML    N + PD  TF  V+ +C    L  +     + +  ++G    
Sbjct: 87  RHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCT-GILCHRLGMQVHGLVYKFGADFH 145

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
                 ++ + ++   ++ A +   +M  +     W +L++G    G +   +     LF
Sbjct: 146 CITENALIDMYTKFGDLTNACKVFEEMSHRDVIS-WNSLIFGYVKLGQMNSAR----ELF 200

Query: 371 EIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +  P  T  ++  M   Y + G + +A  V  +M+  G+
Sbjct: 201 DDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGI 239


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 259/469 (55%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ RD  +W+ M+ G+++ G +  C A FRE+L   V  PD  T+  V++ C   +D+  
Sbjct: 61  LTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVT-PDNYTLPFVIRTCRDRTDLQI 119

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+ V++  +  D ++C +L+ MYAKC                       I+     
Sbjct: 120 GRVIHDVVLKHGLLSDHFVCASLVDMYAKC-----------------------IV----- 151

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A  LF+ M    L TW  +I      N +E+++ L   M+  GV P+ V + ++
Sbjct: 152 ---VEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLV-LFDRMREEGVVPDKVAMVTV 207

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    +   +  + Y V+N +  ++ + TA+ID YAK G +  A+ VFDR K +++
Sbjct: 208 VNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNV 267

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W+A+I+AY  HG    A+ LF+ ML+  I P+ VTF ++L AC+H+GL+++    FN+
Sbjct: 268 ISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNS 327

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ ++P V+HY CMV +L RA R+ EA   +  M V+   ++W ALL    I   +E
Sbjct: 328 MWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKME 387

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + L E++P+N G+Y++++N+Y++AG+W++  + R+ M +  L KIPG +WIE  
Sbjct: 388 LAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVD 447

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                F   D S  +S++IY +L  L+  +   GYV     +L +VEEE
Sbjct: 448 NKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEE 496



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 149/334 (44%), Gaps = 38/334 (11%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +D V  + ++  Y  H  ++ A  LF  +      TW+ ++ G  +   H       RE+
Sbjct: 33  QDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFREL 92

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              GV P+  T+  +       ++L+ G+ IH   +K+    + +V  +++D YAK   +
Sbjct: 93  LRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVV 152

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             AQR+F+R   + L+ WT +I AY A  +A +++ LF+ M   G+ PD V    V++AC
Sbjct: 153 EDAQRLFERMLSKDLVTWTVMIGAY-ADCNAYESLVLFDRMREEGVVPDKVAMVTVVNAC 211

Query: 286 AHSGLVDKA-------------WDIF--NAMSGQYGIQPSVE---------------HYA 315
           A  G + +A              D+    AM   Y    SVE                ++
Sbjct: 212 AKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWS 271

Query: 316 CMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE- 371
            M+       R  +A +    M    + P+   + +LLY  S +G +E G    + ++E 
Sbjct: 272 AMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEE 331

Query: 372 --IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             + P +  +Y  M +L  +AGR DEA R+ E M
Sbjct: 332 HAVRP-DVKHYTCMVDLLGRAGRLDEALRLIEAM 364



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S   L     N+   +++H + V N   +++ +A  ++ TYA+   +  A  +FD    R
Sbjct: 5   SCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMR 64

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
               W+ ++  +A  GD +   + F E+L  G+ PD  T   V+  C
Sbjct: 65  DSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTC 111


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/482 (35%), Positives = 258/482 (53%), Gaps = 35/482 (7%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I GYS      +   LFR M+ S  L P+  T+  VL+ACG  S     + VH   
Sbjct: 56  YNSLIRGYSNSDDPIDAVLLFRRMICSG-LSPNEFTLPFVLKACGCKSAYWEAVLVHGLA 114

Query: 69  IESHIK----------------------------------MDLWICNALIGMYAKCGSLD 94
           I+  I                                   +D+ + NAL+ MYAKCG+L 
Sbjct: 115 IKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLH 174

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
            A+A+ D   +K+ VS++++IS Y  HG +E A  +F  M    + +WN++IS  ++  +
Sbjct: 175 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 234

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +   LDL  +M+ S V P+  T+ SI +  S   +L  GK+IH Y + N+    + +  +
Sbjct: 235 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNS 294

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +ID YAK G +  A  +F    G++L+ W  II A A HG   +A+ LF EM  +G  PD
Sbjct: 295 LIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 354

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            +T T +LSAC+HSGLVD     F+ M   Y +   +EHYACMV +L R   + EA E +
Sbjct: 355 EITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELI 414

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394
            +MP+KP   VWGALL    I G+VE+GK +   L E+EP + G Y++++N+Y +A RW+
Sbjct: 415 GRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWE 474

Query: 395 EADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           +  ++R+ M + G+ K    S IE  G +  F+  D     S  IY +L++L   +R  G
Sbjct: 475 DVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRSAG 534

Query: 455 YV 456
           Y+
Sbjct: 535 YL 536



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 127/269 (47%), Gaps = 34/269 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWNSMI+ Y + G Y E   LF +M NS V+ PD  T+VS+L AC Q  D+V 
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVM 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++HN+++ +     + + N+LI MYAKCG +  A  +  EM  K+ VS++ II    +
Sbjct: 273 GKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALAL 332

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+ LF+ M                               QA G  P+ +T++ +
Sbjct: 333 HGCGLEAIKLFEEM-------------------------------QADGTLPDEITLTGL 361

Query: 181 FSLFSHFSNLKGG-KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            S  SH   +  G        V  R  R I     ++D   + G L  A  +  R   + 
Sbjct: 362 LSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKP 421

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEML 267
            +++W A++ A   HG+      +  ++L
Sbjct: 422 DVVVWGALLGACRIHGNVEIGKQILKQLL 450



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 130/281 (46%), Gaps = 24/281 (8%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G ++ A  +F  + +P    +N++I G   ++     + L R M  SG+ PN  T+  + 
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL- 240
                 S       +HG A+K      ++V  A+I  Y   G +H A+++FD    ++L 
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI 155

Query: 241 --IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             I+  A++  YA  G+   A ++F+      +    V++T+++SA A  G ++ A  IF
Sbjct: 156 DIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNV----VSWTSMISAYAQHGSIEVARQIF 211

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASI 355
           + M G+     +V  +  M+    R  +  EA +  +KM    V P      ++L   S 
Sbjct: 212 DQMPGK-----NVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQ 266

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYII-----MANLYSQAG 391
            GD+ +GK + +++      N G Y +     + ++Y++ G
Sbjct: 267 LGDLVMGKKIHNYIL----SNKGAYGVTLYNSLIDMYAKCG 303



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G L  AQR+FD+    +  ++ ++I  Y+   D   AV LF  M+ +G+ P+  T   VL
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 283 SACAHSGLVDKAWD--IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
            AC   G     W+  + + ++ + GI   V     ++ V      I  A +    +  K
Sbjct: 96  KAC---GCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDK 152

Query: 341 P--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398
                 V  AL+   +  G++   + + D     + +N  ++  M + Y+Q G  + A +
Sbjct: 153 TLIDIIVRNALVDMYAKCGNLHSAQAIFD---RTQEKNVVSWTSMISAYAQHGSIEVARQ 209

Query: 399 VREQMKESGLAKIPGRSWIEC 419
           + +QM   G   +   S I C
Sbjct: 210 IFDQM--PGKNVVSWNSMISC 228


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 261/471 (55%), Gaps = 40/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSW ++IAG++Q G +     LFRE +    +  D + + S+L AC     I  
Sbjct: 480 MPDKDVVSWTTIIAGHAQNGSHSRALELFRE-VQLEGIDLDVMMISSILLACSGLKLISS 538

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H+++I   +  DL + N ++ +Y +CG++DYA  + + +  KD VS          
Sbjct: 539 VKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVS---------- 587

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++IS  V N      L+L   M+ +GV P+++++ SI
Sbjct: 588 ---------------------WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 626

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  S LK GKEIHG+ ++  +     +A+ ++D YA+ G L  ++ VF+  + + L
Sbjct: 627 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 686

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++WT++I+AY  HG    A+ LF  M +  I PD + F AVL AC+HSGL+++      +
Sbjct: 687 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLES 746

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P  EHY C+V +L RA  + EA +FV  M V+P+A+VW ALL    I  + E
Sbjct: 747 MKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKE 806

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     L E++PEN GNY++++N+Y+   RW + + VR +MK SGL K PG SWIE  
Sbjct: 807 LGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVG 866

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEE 464
             + +F+A+D S  +S +IY  L ++   + +EG       +VL +  EEE
Sbjct: 867 NKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEE 917



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 213/473 (45%), Gaps = 100/473 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D +SWNSM++G+ Q G Y E    + EM ++   +PD V V+S++ A  +S + + 
Sbjct: 379 MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARSGNTLN 437

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM++H + +++ +  DL + N+L+ MYAK  S+ Y   + D+M DKD VS++ II+G+  
Sbjct: 438 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH-- 495

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN  H   L+L RE+Q  G+  + + ISSI
Sbjct: 496 -----------------------------AQNGSHSRALELFREVQLEGIDLDVMMISSI 526

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    +   KEIH Y ++     ++ +   I+D Y + G +  A R+F+  + + +
Sbjct: 527 LLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDV 585

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV------------------- 281
           + WT++IS Y  +G A++A+ LF+ M   G++PD ++  ++                   
Sbjct: 586 VSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGF 645

Query: 282 ----------------LSACAHSGLVDKAWDIFN-----------AMSGQYGIQPSVEHY 314
                           +   A  G ++K+ ++FN           +M   YG+      +
Sbjct: 646 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM------H 699

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FE 371
            C    +   RR+ + +       + P    + A+LY  S SG +  G+   + +   ++
Sbjct: 700 GCGRAAIDLFRRMEDES-------IAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQ 752

Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           +EP    +Y+ + +L  +A   +EA +  + M+    A++    W    G  Q
Sbjct: 753 LEPWPE-HYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEV----WCALLGACQ 800



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 153/295 (51%), Gaps = 32/295 (10%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K D+VSWNSMI+ YS  G   E   LF EM  +  L P+  T V+ LQAC  SS I  GM
Sbjct: 280 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS-LAPNTYTFVAALQACEDSSFIKQGM 338

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H  V++S   +++++ NALI MYA+ G +  A  +   M D D +S+++++SG++ +G
Sbjct: 339 FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 398

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
              +A+  +                                EM+ +G +P+ V + SI +
Sbjct: 399 LYHEALQFYH-------------------------------EMRDAGQKPDLVAVISIIA 427

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +   N   G +IH YA+KN  D ++ V  +++D YAK   +     +FD+   + ++ 
Sbjct: 428 ASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 487

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           WT II+ +A +G  S+A+ LF E+   GI  D +  +++L AC+   L+    +I
Sbjct: 488 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 542



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 162/358 (45%), Gaps = 35/358 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + I +WN+MI  Y   G       L+REM  S +   D  T   +L+ACG   D   
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGI-PLDACTFPCILKACGLLKDRRC 234

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
           G EVH   I+      +++ N+++GMY KC  L+ AR L D M +K D VS++++IS Y 
Sbjct: 235 GAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYS 294

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G   +A+ LF                                EMQ + + PN  T  +
Sbjct: 295 SNGQSIEALRLFG-------------------------------EMQKASLAPNTYTFVA 323

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
                   S +K G  IH   +K+ Y  N++VA A+I  YA+ G +  A  +F       
Sbjct: 324 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            I W +++S +  +G   +A+  ++EM + G +PD V   ++++A A SG       I +
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI-H 442

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           A + + G+   ++    +V + ++   +        KMP K     W  ++ G + +G
Sbjct: 443 AYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS-WTTIIAGHAQNG 499



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 146/321 (45%), Gaps = 42/321 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSD 105
           SVL+ CG    +  G +VH  +I S+   + +++   L+ MY KCG L  A  L D M  
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 178

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           K                                + TWNA+I   V N      L+L REM
Sbjct: 179 KT-------------------------------IFTWNAMIGAYVTNGEPLGSLELYREM 207

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           + SG+  +A T   I        + + G E+HG A+K  Y   ++VA +I+  Y K   L
Sbjct: 208 RVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDL 267

Query: 226 HGAQRVFDRFKGRSLII-WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +GA+++FDR   +  ++ W ++ISAY+++G + +A+ LF EM    + P+  TF A L A
Sbjct: 268 NGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQA 327

Query: 285 CAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           C  S  + +   I    +   Y I   V +   ++ + +R  ++ EA      M      
Sbjct: 328 CEDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNM------ 379

Query: 344 KVWGALLYGASISGDVELGKF 364
             W  + + + +SG V+ G +
Sbjct: 380 DDWDTISWNSMLSGFVQNGLY 400



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAV-KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           SS+  L      L  G+++H + +  N    +++++T ++  Y K G L  A+++FD   
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 177

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD--KA 294
            +++  W A+I AY  +G+   ++ L+ EM  +GI  D  TF  +L AC   GL+   + 
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLLKDRRC 234

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
               + ++ + G    V     +VG+ ++   ++ A +   +MP K     W +++   S
Sbjct: 235 GAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYS 294

Query: 355 ISG 357
            +G
Sbjct: 295 SNG 297


>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g08510-like [Glycine max]
          Length = 474

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 249/446 (55%), Gaps = 4/446 (0%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEE-CKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           SK  +  +N +I  YS    ++  C +L+ ++     L P+  T   +  AC   S    
Sbjct: 7   SKPTLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFL-PNQHTFNFLFSACTSLSSSSL 65

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   I+S  + DL+   AL+ MYAK G+L+ AR L DEM  +    ++A+++G   
Sbjct: 66  GQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLAR 125

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
            G ++ A++LF  M    +  W  +ISG   N +++  L L   M Q  G+ PNAVT+ S
Sbjct: 126 FGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVS 185

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-R 238
           I    ++   L+ G+ +  YA KN + +N Y + A+++ Y K G +  A RVF+     R
Sbjct: 186 ILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLR 245

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L  W +++   A HG+  KA+ L+++ML  G  PD VTF  +L AC   G+V K   IF
Sbjct: 246 NLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIF 305

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            + +  + I P +EHY CMV +L RA ++ EA E +  M +KP + +WGALL   S  G+
Sbjct: 306 KSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGN 365

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL +   + LF +EP N GNY+I++N+Y+ AG+WD   ++R+ MK S + K  G S+IE
Sbjct: 366 VELAEIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIE 425

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILE 444
               L  F+ KD S  KS +I+ +L+
Sbjct: 426 EGAQLHKFIVKDRSHPKSNEIFALLD 451



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++V W +MI+GYS    Y++   LF  M     + P+ VT+VS+L AC     +  
Sbjct: 139 MPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEI 198

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
           G  V  +  ++    + +  NA++ MY KCG +D A  + +E+ S ++  S+++++ G  
Sbjct: 199 GQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLA 258

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           VHG   KA++L+  M   G S  +    GL+
Sbjct: 259 VHGECCKALELYDQMLGEGTSPDDVTFVGLL 289


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 257/457 (56%), Gaps = 1/457 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + S+I G+   G Y +   LF +M+   VL  D   V ++L+AC     +  G EV
Sbjct: 89  NVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVL-ADNYAVTAMLKACVLQRALGSGKEV 147

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++S + +D  I   L+ +Y KCG L+ AR + D M ++D V+ + +I      G V
Sbjct: 148 HGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMV 207

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E+A+++F  M       W  VI GLV+N      L++ REMQ  GV PN VT   + S  
Sbjct: 208 EEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSAC 267

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L+ G+ IH Y  K   + N +VA A+I+ Y++ G +  AQ +FD  + + +  + 
Sbjct: 268 AQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYN 327

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I   A HG + +AV LF+EML   ++P+ +TF  VL+AC+H GLVD   +IF +M   
Sbjct: 328 SMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMI 387

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           +GI+P VEHY CMV +L R  R+ EA +F+ +M V+   K+  +LL    I  ++ +G+ 
Sbjct: 388 HGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEK 447

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L E    ++G++I+++N Y+  GRW  A  VRE+M++ G+ K PG S IE +  + 
Sbjct: 448 VAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIH 507

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
            F + D    + ++IY  LE L  L + EGY+   EV
Sbjct: 508 EFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEV 544



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 45/373 (12%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H   I++    D ++   L+ +Y K   +D+A  L     + +   Y+++I G++  G 
Sbjct: 46  IHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGS 105

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA----SGVRPNAVTISS 179
              A++LF  M R  +   N  ++ +++    +  L   +E+      SG+  +      
Sbjct: 106 YTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALK 165

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +  L+     L+  +++         +R++   T +I +    G +  A  VF+    R 
Sbjct: 166 LVELYGKCGVLEDARKM----FDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRD 221

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD------- 292
            + WT +I     +G+ ++ + +F EM   G++P+ VTF  VLSACA  G ++       
Sbjct: 222 TVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHA 281

Query: 293 ----------------------KAWDIFNAMSGQYGIQ-PSVEHYACMVGVLSRARRISE 329
                                 +  DI  A +   G++   V  Y  M+G L+   +  E
Sbjct: 282 YMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIE 341

Query: 330 ATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFV---CDHLFEIEPENTGNYIIM 383
           A E  S+M    V+P+   +  +L   S  G V+LG  +    + +  IEPE   +Y  M
Sbjct: 342 AVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPE-VEHYGCM 400

Query: 384 ANLYSQAGRWDEA 396
            ++  + GR +EA
Sbjct: 401 VDILGRVGRLEEA 413



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 6/177 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V W  +I G  + G +     +FREM    V  P+ VT V VL AC Q   +  
Sbjct: 217 MGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGV-EPNEVTFVCVLSACAQLGALEL 275

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++ +  ++++ ++  ALI MY++CG +D A+AL D +  KD  +Y+++I G  +
Sbjct: 276 GRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLAL 335

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GVRP 172
           HG   +A++LF  M +  +        G++    H  ++DL  E+  S     G+ P
Sbjct: 336 HGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEP 392



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 56/103 (54%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           L  +  N K  + IH +A+K R  ++ +VA  ++  Y K  ++  A ++F   +  ++ +
Sbjct: 33  LHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYL 92

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           +T++I  + + G  + A++LF +M+   +  D    TA+L AC
Sbjct: 93  YTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKAC 135



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+ ++NSMI G +  G   E   LF EML   V RP+G+T V VL AC     +  G E
Sbjct: 321 KDVSTYNSMIGGLALHGKSIEAVELFSEMLKERV-RPNGITFVGVLNACSHGGLVDLGGE 379

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVH 121
           +   +   H I+ ++     ++ +  + G L+ A   +  M  + D+    +++S   +H
Sbjct: 380 IFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIH 439

Query: 122 ---GFVEKAMDLF 131
              G  EK   L 
Sbjct: 440 KNIGMGEKVAKLL 452


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 265/473 (56%), Gaps = 16/473 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREM-----LNSPVLRPDGVTVVSVLQACGQSS 56
           + R++VS+N++I+  ++ G   E   +F ++     L    +  D  TVVS   AC    
Sbjct: 125 ASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLR 184

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D     E+H  V+ S +++ + + NA++  Y+K G ++ AR L D+M+ +D VS++++I+
Sbjct: 185 DARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIA 244

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY     ++ A+ +F +M       W A+ISG  QN   E  L+L   M   GV P    
Sbjct: 245 GYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFA 304

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFD 233
           + S     +    +  GKE+HG+ ++        N+++  A+ID Y+K G +  A  VFD
Sbjct: 305 LVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFD 364

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           R   R +I W ++++ ++ +G   +++++F  ML + +QP  VTF AVL+AC+H+GLV  
Sbjct: 365 RMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSD 424

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALL 350
              I  +M   +G++P  EHYA  +  L R  ++ EA+EF+  +  K    +   WGALL
Sbjct: 425 GRRILESMQ-DHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALL 483

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               + G++E+ + V + LF++EPEN+G Y++++N+YS AG+WD+A +VR  MK  GL K
Sbjct: 484 GACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRK 543

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
               SWIE       FVA DTS  ++ +IY +L++L   M    +++   VEE
Sbjct: 544 DQAYSWIEVQRAKHMFVADDTSHHEANEIYEMLDKLFHHM----FIIGGNVEE 592



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 174/408 (42%), Gaps = 45/408 (11%)

Query: 45  VVSVLQACGQSSDIV-FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           V+++L+    + D+   G  VH  ++++ +     + N L+ +YA   +   + A  D++
Sbjct: 31  VLALLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDL 90

Query: 104 SDKDEVSYSAIISGYMV-HGFVEKAMDLFQVMKRP--GLSTWNAVISGLVQNNRHEAVLD 160
             K+  SY+++++      G +  A+ L   M      + ++N VIS L ++ R    L 
Sbjct: 91  PHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALR 150

Query: 161 LV------REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +       R +    V  +  T+ S  S  +   + +  +E+HG  V +  +  + +A A
Sbjct: 151 VFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANA 210

Query: 215 IIDTYAKTG-------------------------------FLHGAQRVFDRFKGRSLIIW 243
           ++D Y+K G                                L  A +VFD    +  I W
Sbjct: 211 MVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAW 270

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMS 302
           TA+IS +  +G+   A+ LF  M   G+ P P    + L ACA  GLV +  ++    + 
Sbjct: 271 TALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILR 330

Query: 303 GQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              G  P +V  +  ++ + S+   +  A     +M ++     W +++ G S +G  + 
Sbjct: 331 RSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERDIISWNSMVTGFSHNGQGKQ 389

Query: 362 GKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              V + + + E + T   ++ +    S AG   +  R+ E M++ G+
Sbjct: 390 SLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGV 437



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 49/217 (22%)

Query: 1   MSKRDIVSWNSMIAGY-------------------------------SQGGFYEECKALF 29
           M+ RD VSW SMIAGY                                Q G  E    LF
Sbjct: 231 MTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELF 290

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGM 86
             M    V+ P    +VS L AC +   +  G EVH F++   I  D   ++I NALI M
Sbjct: 291 ERMTGEGVV-PTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDM 349

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTW 142
           Y+KCG +  A A+ D M ++D +S++++++G+  +G  ++++ +F+ M +    P   T+
Sbjct: 350 YSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTF 409

Query: 143 NAVIS-----GLVQNNRHEAVLDLVREMQASGVRPNA 174
            AV++     GLV + R      ++  MQ  GV P A
Sbjct: 410 LAVLTACSHAGLVSDGRR-----ILESMQDHGVEPRA 441



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDI+SWNSM+ G+S  G  ++  A+F  ML   V +P  VT ++VL AC  +  +  
Sbjct: 366 MLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEV-QPTYVTFLAVLTACSHAGLVSD 424

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV----SYSAIIS 116
           G  +   + +  ++       A I    +   L+ A   +  +S K  +    S+ A++ 
Sbjct: 425 GRRILESMQDHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLG 484

Query: 117 GYMVHGFVEKAMD----LFQV 133
              VHG +E A +    LFQ+
Sbjct: 485 ACHVHGNIEIAEEVAEALFQL 505


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/473 (33%), Positives = 271/473 (57%), Gaps = 28/473 (5%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R I  WN+MIAGY+Q    E+   LF EM  +  L  +  T+ S++ A  +   I     
Sbjct: 281 RKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEG 340

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +VI+  ++ + ++ NALI MY++ G +  ++ + D M D+D VS++ II+ Y++ G 
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400

Query: 124 VEKAMDLFQVMKR-PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
              A+ L   M+R    ST++                D   E Q    +PN++T+ ++  
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDG---------------DYNDEKQVP-FKPNSITLMTVLP 444

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  S L  GKEIH YA++N     + V +A++D YAK G L+ A+RVFD+   R++I 
Sbjct: 445 GCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVIT 504

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNG-----IQPDPVTFTAVLSACAHSGLVDKAWDI 297
           W  II AY  HG   +++ LF +M+  G     ++P  VTF A+ ++C+HSG+VD+   +
Sbjct: 505 WNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSL 564

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASIS 356
           F+ M  ++GI+P+ +HYAC+V ++ RA ++ EA   V+ MP        W +LL    I 
Sbjct: 565 FHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIY 624

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            ++E+G+   ++L +++P+   +Y++++N+YS AG WD+A  +R +MK  G+ K PG SW
Sbjct: 625 HNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSW 684

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           IE    +  F+A D S  +SE+++  LE L   +++EGYV     +L +++EE
Sbjct: 685 IEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEE 737



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 137/290 (47%), Gaps = 40/290 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSD 57
           +++RD VSWNS+I+   +   +E     FR ML      P   T+VS+  AC    +   
Sbjct: 73  ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEG-FEPSSFTLVSMALACSNLRKRDG 131

Query: 58  IVFGMEVHNFVI-ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           +  G ++H     + H +   +  NAL+ MYAK G LD A++LL    D+D         
Sbjct: 132 LWLGKQIHGCCFRKGHWRT--FSNNALMAMYAKLGRLDDAKSLLVLFEDRD--------- 180

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                                 L TWN++IS   QN R    L  +R M   GV+P+ VT
Sbjct: 181 ----------------------LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVT 218

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
            +S+    SH   L+ GKEIH YA++ +    N +V +A++D Y   G +   + VFD  
Sbjct: 219 FASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV 278

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSA 284
             R + +W A+I+ YA      KA+ LF EM    G+  +  T ++++ A
Sbjct: 279 LDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA 328



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 45/267 (16%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIE------SHIKMDLWICNALIGMYAKCGSL 93
           PD     +VL+A     ++  G ++H  V +      S + +D    N L+ MY KCG L
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTID----NTLVNMYGKCGGL 63

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
             A  + D ++++D+VS                               WN++IS L +  
Sbjct: 64  GDAYKVFDRITERDQVS-------------------------------WNSIISALCRFE 92

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG---GKEIHGYAVKNRYDRNIY 210
             E  +   R M   G  P++ T+ S+    S+     G   GK+IHG   +  + R  +
Sbjct: 93  EWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRT-F 151

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
              A++  YAK G L  A+ +   F+ R L+ W ++IS+++ +    +A+     M+  G
Sbjct: 152 SNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEG 211

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDI 297
           ++PD VTF +VL AC+H  L+    +I
Sbjct: 212 VKPDGVTFASVLPACSHLDLLRTGKEI 238



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKT 222
           M  SG  P+     ++    +    L  GK+IH +  K  Y    ++ +   +++ Y K 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G L  A +VFDR   R  + W +IISA     +   A+  F  ML  G +P   T  ++ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 283 SACAHSGLVDKAW 295
            AC++    D  W
Sbjct: 121 LACSNLRKRDGLW 133


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 245/453 (54%), Gaps = 32/453 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D VSW +MI G +Q G  +E    FREM     L+ D     SVL ACG    I  G 
Sbjct: 232 EKDSVSWAAMIKGLAQNGLAKEAIECFREM-KVQGLKMDQYPFGSVLPACGGLGAINEGK 290

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +I ++ +  +++ +ALI MY KC  L YA+ + D M  K+ V             
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV------------- 337

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             +W A++ G  Q  R E  + +  +MQ SG+ P+  T+    S
Sbjct: 338 ------------------SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAIS 379

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++ S+L+ G + HG A+ +     + V+ +++  Y K G +  + R+F+    R  + 
Sbjct: 380 ACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS 439

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA++SAYA  G A + + LF++M+ +G++PD VT T V+SAC+ +GLV+K    F  M+
Sbjct: 440 WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +YGI PS+ HY+CM+ + SR+ R+ EA  F++ MP  P A  W  LL      G++E+G
Sbjct: 500 SEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIG 559

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K+  + L E++P +   Y +++++Y+  G+WD   ++R  M+E  + K PG+SWI+  G 
Sbjct: 560 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGK 619

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           L SF A D S    +QIY  LE L   + + GY
Sbjct: 620 LHSFSADDESSPYLDQIYAKLEELNNKIIDNGY 652



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 209/439 (47%), Gaps = 48/439 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD V+WN +I GYS  G        +  M+         VT++++L+    +  +  
Sbjct: 98  LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI+   +  L + + L+ MYA  G +  A+ +   + D++ V Y++++ G + 
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A+ LF+ M++  +S W A+I GL QN   +  ++  REM+  G++ +     S+
Sbjct: 218 CGMIEDALQLFRGMEKDSVS-WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    +  GK+IH   ++  +  +IYV +A+ID Y K   LH A+ VFDR K +++
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           + WTA++  Y   G A +AV +F +M  +GI PD  T    +SACA+             
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396

Query: 288 ---SGL-------------------VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
              SGL                   +D +  +FN M+ +  +      +  MV   ++  
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS-----WTAMVSAYAQFG 451

Query: 326 RISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
           R  E  +   KM    +KP       ++   S +G VE G+     +   + I P + G+
Sbjct: 452 RAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVP-SIGH 510

Query: 380 YIIMANLYSQAGRWDEADR 398
           Y  M +L+S++GR +EA R
Sbjct: 511 YSCMIDLFSRSGRLEEAMR 529



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 160/353 (45%), Gaps = 21/353 (5%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +I +    + ++ N ++  YA   S  YAR + D +   +  S++ ++  Y   G 
Sbjct: 28  IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87

Query: 124 VEKAMDLFQVMKRPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           + +    F+ +      TWN +I     SGLV     +A   ++R+  A+  R   VT+ 
Sbjct: 88  ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLV-GAAVKAYNTMMRDFSANLTR---VTLM 143

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++  L S   ++  GK+IHG  +K  ++  + V + ++  YA  G +  A++VF     R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + +++ +++    A G    A+ LF      G++ D V++ A++   A +GL  +A + F
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLF-----RGMEKDSVSWAAMIKGLAQNGLAKEAIECF 258

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGASI 355
             M  Q G++     +  ++        I+E  +    + +   +    V  AL+     
Sbjct: 259 REMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK 317

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              +   K V D +   + +N  ++  M   Y Q GR +EA ++   M+ SG+
Sbjct: 318 CKCLHYAKTVFDRM---KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGI 367



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K IHG  ++       ++   I+  YA       A+RVFDR    +L  W  ++ AY+  
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           G  S+  S F ++ +     D VT+  ++   + SGLV  A   +N M
Sbjct: 86  GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTM 129


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 261/456 (57%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSW  +I+GYSQ G   E  ALF +ML+    +P+  T+ S+L+A G       
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHH 224

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F ++    M++ + ++L+ MYA+   +  A+ + + ++ K+ VS          
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS---------- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E V+ L  +M   G  P   T SS+
Sbjct: 275 ---------------------WNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSV 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F+  +   +L+ GK +H + +K+      Y+   +ID YAK+G +  A++VF R   + +
Sbjct: 314 FTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDI 373

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +IIS YA HG  ++A+ LF +ML   +QP+ +TF +VL+AC+HSGL+D+    F  
Sbjct: 374 VSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFEL 433

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I+  V H+  +V +L RA R++EA +F+ +MP+KP+A VWGALL    +  +++
Sbjct: 434 MK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMD 492

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG +  + +FE++P ++G +++++N+Y+ AGR  +A +VR+ MKESG+ K P  SW+E  
Sbjct: 493 LGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIE 552

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D S    E+I  + E++ G ++E GYV
Sbjct: 553 NEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYV 588



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 198/420 (47%), Gaps = 71/420 (16%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           +++N   L P+      +L  C     +  G  +H  +  S  + DL + N ++ MYAKC
Sbjct: 94  DLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC 153

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GSL+ A+ L D+M  KD VS++ +ISGY   G   +A+ LF  M                
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM---------------- 197

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                   L L       G +PN  T+SS+        +   G+++H +++K  YD N++
Sbjct: 198 --------LHL-------GFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVH 242

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V ++++D YA+   +  A+ +F+    ++++ W A+I+ +A  G+    + LF +ML  G
Sbjct: 243 VGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQG 302

Query: 271 IQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQP-------SVEHYACMVGVLS 322
            +P   T+++V +ACA SG +++  W   +A   + G QP        ++ YA   G + 
Sbjct: 303 FEPTHFTYSSVFTACASSGSLEQGKW--VHAHVIKSGGQPIAYIGNTLIDMYA-KSGSIK 359

Query: 323 RARRI-------------------------SEATEFVSKM---PVKPSAKVWGALLYGAS 354
            A+++                         +EA +   +M    V+P+   + ++L   S
Sbjct: 360 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 419

Query: 355 ISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            SG ++ G++  + + + + E    +++ + +L  +AGR +EA++  E+M     A + G
Sbjct: 420 HSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWG 479



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 5/203 (2%)

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           VLDL+       + P     S + +  ++   LK G+ IH +   + ++ ++ +   I++
Sbjct: 92  VLDLI---NCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILN 148

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YAK G L  AQ +FD+   + ++ WT +IS Y+  G AS+A++LF +ML+ G QP+  T
Sbjct: 149 MYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT 208

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            +++L A   +G  D      +A S +YG   +V   + ++ + +R   + EA    + +
Sbjct: 209 LSSLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 338 PVKPSAKVWGALLYGASISGDVE 360
             K +   W AL+ G +  G+ E
Sbjct: 268 AAK-NVVSWNALIAGHARKGEGE 289


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 256/463 (55%), Gaps = 10/463 (2%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + WNSMI  Y++   Y E   ++  M+    L  D      ++    +  D+    EV  
Sbjct: 115 ILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREV-- 172

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
              +   K D+   NA+I   ++      AR + D+M D+D+VS+  +++GY  +G   +
Sbjct: 173 --FDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVE 230

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
            ++LF  MK  G  TWN +I+  +QN   +  +    +M+     PN+VT  S+    ++
Sbjct: 231 VLELFDKMKL-GNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 289

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            +  + G   H   ++  +  N  V  ++ID YAK G L  ++++F+    +  + W A+
Sbjct: 290 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 349

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           +S YA HG   +A++LF+ M  + +Q D V+F +VLSAC H+GLV++   IF++MS +Y 
Sbjct: 350 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 409

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           I+P +EHYACMV +L RA    E   F+  MPV+P A VWGALL    +  +V+LG+   
Sbjct: 410 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 469

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
           DHL ++EP N  ++++++++Y+Q+GRW +A + R +M + GL K PG SW+E    + +F
Sbjct: 470 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAF 529

Query: 427 VAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
              D S  + E ++L+   LL  M + GYV     +L  VEEE
Sbjct: 530 RVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEE 572



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSWN+M++GY+  G  +   ALF  M  S V + D V+ VSVL AC  +  +  
Sbjct: 338 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV-QIDSVSFVSVLSACRHAGLVEE 396

Query: 61  GMEV-HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G ++ H+   + HIK DL     ++ +  + G  D     +  M  + D   + A++   
Sbjct: 397 GRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSC 456

Query: 119 MVHGFVE 125
            +H  V+
Sbjct: 457 RMHSNVK 463


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 251/464 (54%), Gaps = 44/464 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS---PV----------LRPDGVTVVS 47
           M +RD+VSWNSMI+ Y+  G + E   LFR M +    PV             D VT+V 
Sbjct: 211 MVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVRGGAEVDYVTLVI 270

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
            L AC +   +  G E+H   +         + NALI MYA+C  ++ AR L        
Sbjct: 271 GLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARML-------- 322

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                                  F++++ PG+ TWN ++S    ++  E    + REM  
Sbjct: 323 -----------------------FRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMIC 359

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV+PN VT+ +  +L +  +NL+ G+E+HG+ VK+ +     +  ++ID Y+K+G L  
Sbjct: 360 RGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSV 419

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           AQ VFD      +I +T++I+ Y   G  + A+ LF +M+++GI+PD +    VLSAC+H
Sbjct: 420 AQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSH 479

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
           SGLV +  ++FN M   YGI+P +EHY+CM+ + +RA  + +A E +   P  P++ +W 
Sbjct: 480 SGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWA 539

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           AL+      G++E+G+     L E+  EN G+Y+++AN+Y+ AG WDE   VR+ M++ G
Sbjct: 540 ALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLG 599

Query: 408 LAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
           + K PG +W +   G   F+  D S   + +IY++L+ L   MR
Sbjct: 600 VTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYVVLDELSEQMR 643



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 54/380 (14%)

Query: 29  FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
           ++EM  + VL PD  T  SVL+AC ++ ++V G  VH     + +  +L+  NAL+ MYA
Sbjct: 138 YQEMGKNGVL-PDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYA 196

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCG L  AR + D M  +D VS++++IS Y   G   +AM+LF+ M+  G          
Sbjct: 197 KCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEP------- 249

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
                     + L+REM   G   + VT+    +  S    L+ GKEIHG AV+   D+ 
Sbjct: 250 ----------VGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQV 299

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
             V+ A+I  YA+   +  A+ +F   +   ++ W  ++S++A    A +A S+F EM+ 
Sbjct: 300 ESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMIC 359

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
            G++P+ VT    L+ CA          + N   GQ                        
Sbjct: 360 RGVKPNYVTVVTYLALCAR---------VANLQHGQ------------------------ 386

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
           E    + K   K    +W +L+   S SG + + + V D + + +     +Y  M   Y 
Sbjct: 387 ELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCD---MISYTSMIAGYG 443

Query: 389 QAGRWDEADRVREQMKESGL 408
             G+   A R+ EQM +SG+
Sbjct: 444 MQGKGTVALRLFEQMIDSGI 463


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 256/458 (55%), Gaps = 36/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA--LFREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           + + DIV +N+M  GY++  F +  +A  L  ++L S +L PD  T  S+L+AC +   +
Sbjct: 95  IPQPDIVLFNTMARGYAR--FDDPLRAILLCSQVLCSGLL-PDDYTFSSLLKACARLKAL 151

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G ++H   ++  +  ++++C  LI MY  C  +D AR + D++ +             
Sbjct: 152 EEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGE------------- 198

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                             P +  +NA+I+   +N+R    L L RE+Q SG++P  VT+ 
Sbjct: 199 ------------------PCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTML 240

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
              S  +    L  G+ IH Y  KN +D+ + V TA+ID YAK G L  A  VF     R
Sbjct: 241 VALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRR 300

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
               W+A+I AYA HG  S+A+S+  EM    +QPD +TF  +L AC+H+GLV++ ++ F
Sbjct: 301 DTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYF 360

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           ++M+ +YGI PS++HY CM+ +L RA R+ EA +F+ ++P+KP+  +W  LL   S  G+
Sbjct: 361 HSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGN 420

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+ K V   +FE++  + G+Y+I++NL ++ GRWD+ + +R+ M + G  K+PG S IE
Sbjct: 421 VEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIE 480

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  +  F + D     S  ++  L+ L+  ++  GYV
Sbjct: 481 VNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYV 518



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 139/318 (43%), Gaps = 41/318 (12%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++ A  +F  + +P +  +N +  G  + +     + L  ++  SG+ P+  T SS+   
Sbjct: 85  MDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKA 144

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ GK++H  AVK     N+YV   +I+ Y     +  A+RVFD+     ++ +
Sbjct: 145 CARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAY 204

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMS 302
            AII++ A +   ++A++LF E+  +G++P  VT    LS+CA  G +D   W   +   
Sbjct: 205 NAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRW--IHEYV 262

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP------------------------ 338
            + G    V+    ++ + ++   + +A      MP                        
Sbjct: 263 KKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAI 322

Query: 339 ----------VKPSAKVWGALLYGASISGDVELGK---FVCDHLFEIEPENTGNYIIMAN 385
                     V+P    +  +LY  S +G VE G        H + I P +  +Y  M +
Sbjct: 323 SMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVP-SIKHYGCMID 381

Query: 386 LYSQAGRWDEADRVREQM 403
           L  +AGR +EA +  +++
Sbjct: 382 LLGRAGRLEEACKFIDEL 399


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 260/456 (57%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++V+W ++I+G +Q  FYE+   LF +M    V  P+ +T +S L AC     ++ 
Sbjct: 49  MLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSV-SPNSLTYLSALMACSGLQALLE 107

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +  ++ DL I +AL+ +Y+KCGSL+ A  + +   + D+VS + I+  +M 
Sbjct: 108 GRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQ 167

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ +F  M + G+                              V PN V  S+I
Sbjct: 168 NGLEEEAIQIFMRMVKLGIE-----------------------------VDPNMV--SAI 196

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +F   ++L  GK+IH   +K  + +N++V+  +I+ Y+K G L+ + +VF     ++ 
Sbjct: 197 LGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNS 256

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+AYA +GD  +A+  +++M   GI    VTF ++L AC+H+GLV+K  +   +
Sbjct: 257 VSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLES 316

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +G+ P  EHYAC+V +L RA  + EA +F+  +P  P   VW ALL   SI GD E
Sbjct: 317 MTRDHGLSPRSEHYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSE 376

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + LF   P++   Y++MAN+YS  G+W E  R  ++MKE G+AK  G SW+E  
Sbjct: 377 MGKYAANQLFLATPDSPAPYVLMANIYSSEGKWKERARSIKKMKEMGVAKEVGISWVEIE 436

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SFV  D    +++ I+ +L RLL  +++EGYV
Sbjct: 437 KKVNSFVVGDKMHPQADAIFWLLSRLLKHLKDEGYV 472



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 105/197 (53%)

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MY+KCG L  A  L D M  KD VS++AIISG++ +   +    +F  M    + TW AV
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAV 60

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           ISGL QN  +E  L L  +M+   V PN++T  S     S    L  G++IHG   K   
Sbjct: 61  ISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGM 120

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
             ++ + +A++D Y+K G L  A  +F+  +    +  T I+ A+  +G   +A+ +F  
Sbjct: 121 QSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMR 180

Query: 266 MLNNGIQPDPVTFTAVL 282
           M+  GI+ DP   +A+L
Sbjct: 181 MVKLGIEVDPNMVSAIL 197


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 259/469 (55%), Gaps = 18/469 (3%)

Query: 9   WNSMIAGYS----QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           WN++I   +    Q   +    +L+  M    VL PD  T   +LQ+         G ++
Sbjct: 27  WNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVL-PDLHTFPFLLQSINTPHR---GRQL 82

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  ++   +  D ++  +LI MY+ CG+  +AR   DE++  D  S++AII      G +
Sbjct: 83  HAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMI 142

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA---SGVRPNAVTISSIF 181
             A  LF  M    + +W+ +I G V    ++A L L R +Q    S +RPN  T+SS+ 
Sbjct: 143 HIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVL 202

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSL 240
           S  +    L+ GK +H Y  K     ++ + T++ID YAK G +  A+ +FD     + +
Sbjct: 203 SACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDV 262

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I+A++ HG + + + LF  M+N+G++P+ VTF AVL AC H GLV +  + F  
Sbjct: 263 MAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKR 322

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YG+ P ++HY CMV + SRA RI +A   V  MP++P   +WGALL GA I GDVE
Sbjct: 323 MMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVE 382

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
             +     L E++P N+  Y++++N+Y++ GRW E   +R+ M+  G+ K+PG S +E  
Sbjct: 383 TCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVD 442

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEE 463
           G ++ F A D S  +   +Y++L+ ++  + + GY      VLLD  EE
Sbjct: 443 GVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEE 491



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 38/261 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +++++SW+ MI GY   G Y+   +LFR +  L    LRP+  T+ SVL AC +   +
Sbjct: 152 MPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGAL 211

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISG 117
             G  VH ++ ++ +K+D+ +  +LI MYAKCGS++ A+ + D +  +KD +++SA+I+ 
Sbjct: 212 QHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITA 271

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           + +HG  E+ ++LF                                 M   GVRPNAVT 
Sbjct: 272 FSMHGLSEECLELFA-------------------------------RMVNDGVRPNAVTF 300

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT--AIIDTYAKTGFLHGAQRVFDRF 235
            ++     H   +  G E +   + N Y  +  +     ++D Y++ G +  A  V    
Sbjct: 301 VAVLCACVHGGLVSEGNE-YFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSM 359

Query: 236 KGRS-LIIWTAIISAYAAHGD 255
                ++IW A+++    HGD
Sbjct: 360 PMEPDVMIWGALLNGARIHGD 380



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 3/127 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D+++W++MI  +S  G  EEC  LF  M+N  V RP+ VT V+VL AC     +  G 
Sbjct: 259 EKDVMAWSAMITAFSMHGLSEECLELFARMVNDGV-RPNAVTFVAVLCACVHGGLVSEGN 317

Query: 63  EVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMV 120
           E    ++  + +   +     ++ +Y++ G ++ A  ++  M  + D + + A+++G  +
Sbjct: 318 EYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARI 377

Query: 121 HGFVEKA 127
           HG VE  
Sbjct: 378 HGDVETC 384


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 256/472 (54%), Gaps = 21/472 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG---QSSD 57
           M  RD +SWN MI GY+Q G   E + LF E+    V       +VS     G   +++ 
Sbjct: 241 MPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA--WTAMVSGFVQNGMLDEATR 298

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           I   M   N V         W  NA+I  Y +   ++ AR L D+M  ++  S++ +++G
Sbjct: 299 IFEEMPEKNEVS--------W--NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTG 348

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y   G +++A  LF  M +    +W A+ISG  Q+ + E  L L  +M+  G   N   +
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +   S  +  + L+ GK++HG  VK  +        A++  Y K G +  A  VF+    
Sbjct: 409 ACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE 468

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + ++ W  +I+ YA HG   +A++LF E +   I+PD VT   VLSAC+H+G VDK  + 
Sbjct: 469 KDIVSWNTMIAGYARHGFGKEALALF-ESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEY 527

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN+M   YGI  + +HY CM+ +L RA R+ EA   +  MP  P A  WGALL  + I G
Sbjct: 528 FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D ELG+   + +FE+EP+N+G Y++++NLY+ +GRW E   +R +M++ G+ K+PG SW+
Sbjct: 588 DTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWV 647

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           E       F   D S  ++E+IY  LE L   ++++G+V     +L +VEEE
Sbjct: 648 EIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEE 699



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 197/437 (45%), Gaps = 51/437 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+M++G++Q GF EE + +F +ML    +  +G     +L A  Q+  I  
Sbjct: 148 MPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRI-- 200

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E    + +S +  ++   N L+G Y +   LD AR+L D M  +D++S++ +I+GY  
Sbjct: 201 --EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQ 258

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G + +A  LF+ +    +  W A++SG VQN   +    +  EM       N V+ +++
Sbjct: 259 NGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAM 314

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +     ++  +E+          RN      ++  YA+ G +  A+ +FD    R  
Sbjct: 315 IAGYVQSQQIEKAREL----FDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           I W A+IS YA  G + +A+ LF +M  +G   +       LS+CA           H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 290 LVDKAWDI----FNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEA 330
           LV   +       NA+   YG   S+E                +  M+   +R     EA
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 331 TEFVS--KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANL 386
                  KM +KP       +L   S +G V+ G    + +++      N  +Y  M +L
Sbjct: 491 LALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDL 550

Query: 387 YSQAGRWDEADRVREQM 403
             +AGR DEA  + + M
Sbjct: 551 LGRAGRLDEALNLMKSM 567



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 188/418 (44%), Gaps = 67/418 (16%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DIV WN  I+ Y + G  E   ++F  M      R   VT  +++   G  S+  F  + 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR-----RRSTVTYNAMIS--GYLSNNKF--DC 109

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
              V E     DL   N ++  Y K G+L  ARAL ++M +KD VS++A++SG+  +GFV
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E+A  +F  M      +WN ++S  VQN R E    L                       
Sbjct: 170 EEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRL----------------------- 206

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                             ++ D  I     ++  Y +   L  A+ +FDR   R  I W 
Sbjct: 207 ----------------FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQP--DPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
            +I+ YA +G  S+A  LF E+      P  D   +TA++S    +G++D+A  IF  M 
Sbjct: 251 IMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +  +      +  M+    ++++I +A E   +MP + ++  W  ++ G +  G+++  
Sbjct: 305 EKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMVTGYAQCGNIDQA 358

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           K + D   E+   +  ++  M + Y+Q+G+ +EA  +  +MK  G   I  RS + C+
Sbjct: 359 KILFD---EMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG--GILNRSALACA 411


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 250/473 (52%), Gaps = 40/473 (8%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S+R IVSW +MIAGY +    EE + LF  M+   V  P+ +T++S++ +CG    +  G
Sbjct: 193 SQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVF-PNDITMLSLIISCGFVGAVQLG 251

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H +++ +   M L +  AL+ MY KCG +  ARA+ D M                  
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSM------------------ 293

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                        K   + TW A+IS   Q N  +    L  +M+ +GVRPN +T+ S+ 
Sbjct: 294 -------------KNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLL 340

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           SL +    L  GK  H Y  K   + ++ + TA+ID YAK G + GAQR+F     R + 
Sbjct: 341 SLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDIC 400

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  +++ Y  HG   KA+ LF EM   G++P+ +TF   L AC+H+GLV +   +F  M
Sbjct: 401 TWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKM 460

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              +G+ P VEHY CMV +L RA  + EA + +  MPV P+  +WGA+L    I  +  +
Sbjct: 461 IHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNM 520

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+     L  +EP+N G  ++M+N+Y+ A RW++   +R+ +K++G+ K PG S IE +G
Sbjct: 521 GELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNG 580

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
            +  F   DT+    E+I  +L  +   ++E GY+         +DE E+E+A
Sbjct: 581 LVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETA 633



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 199/401 (49%), Gaps = 50/401 (12%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D   + SVL+AC Q S    G E+H F +++ +  D+++ NAL+ MY++CGSL  AR L 
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D+MS++D VS+S +I  Y+          LF    +  + +W A+I+G ++ N  E    
Sbjct: 168 DKMSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWTAMIAGYIRCNDLEEGER 218

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L   M    V PN +T+ S+         ++ GK +H Y ++N +  ++ +ATA++D Y 
Sbjct: 219 LFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG 278

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K G +  A+ +FD  K + ++ WTA+ISAYA       A  LF +M +NG++P+ +T  +
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS 338

Query: 281 VLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK--- 336
           +LS CA +G +D   W  F+A   + G++  V     ++ + ++   IS A    S+   
Sbjct: 339 LLSLCAVNGALDMGKW--FHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAID 396

Query: 337 -------------------------------MPVKPSAKVWGALLYGASISGDVELGKFV 365
                                          + VKP+   +   L+  S +G V  GK +
Sbjct: 397 RDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGL 456

Query: 366 CD---HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            +   H F + P+   +Y  M +L  +AG  DEA ++ E M
Sbjct: 457 FEKMIHDFGLVPK-VEHYGCMVDLLGRAGLLDEAYKMIESM 496



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 44/289 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+++W +MI+ Y+Q    +    LF +M ++ V RP+ +T+VS+L  C  +  +  
Sbjct: 293 MKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGV-RPNELTMVSLLSLCAVNGALDM 351

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H ++ +  +++D+ +  ALI MYAKCG +  A+ L  E  D+D  +++ +++GY +
Sbjct: 352 GKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGM 411

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+ EKA+ LF                                EM+  GV+PN +T    
Sbjct: 412 HGYGEKALKLFT-------------------------------EMETLGVKPNDITFIGA 440

Query: 181 FSLFSHFSNLKGG-----KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
               SH   +  G     K IH + +  + +        ++D   + G L  A ++ +  
Sbjct: 441 LHACSHAGLVVEGKGLFEKMIHDFGLVPKVEH----YGCMVDLLGRAGLLDEAYKMIESM 496

Query: 236 K-GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
               ++ IW A+++A   H +++       E+L   ++P    +  ++S
Sbjct: 497 PVTPNIAIWGAMLAACKIHKNSNMGELAARELL--ALEPQNCGYKVLMS 543



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 22/155 (14%)

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218
           L+    M+   +  ++  I S+    S  S  + GKEIHG++VKN    +++V  A++  
Sbjct: 94  LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153

Query: 219 YAKTGFLHGAQRVFDR----------------------FKGRSLIIWTAIISAYAAHGDA 256
           Y++ G L  A+ +FD+                      F  RS++ WTA+I+ Y    D 
Sbjct: 154 YSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDL 213

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
            +   LF  M+   + P+ +T  +++ +C   G V
Sbjct: 214 EEGERLFVRMIEENVFPNDITMLSLIISCGFVGAV 248


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 151/470 (32%), Positives = 258/470 (54%), Gaps = 6/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K DI   N++I  Y+      +    + EM  S V+ PD  T   +L+AC +   +  
Sbjct: 95  IRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRL 154

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+ V +     ++ + N L+ MYA CG ++ A  + D   + D  S++ +I GY+ 
Sbjct: 155 GEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLK 214

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  + A  +F+ M    + +W+ +I+G VQ +R +  L L ++M    + PN   + + 
Sbjct: 215 CGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNA 274

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +H   ++ G+ I  Y  +      + + TA+ID Y+K G +  A  VF + K +++
Sbjct: 275 LSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNV 334

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I+  A +G    A++LF++M   G++P+ VTF  +L+AC+HS LVD+    F++
Sbjct: 335 LAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHS 394

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG++P+  H+ CMV +  RA  + +A   +  MP KP++ +WGALL    I GD E
Sbjct: 395 MTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTE 454

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ V   L E++P + G Y++++N+Y+  GRWD    +R  M+E  ++K PG S+I+  
Sbjct: 455 LGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLG 514

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
             +  FVA D+S  + E IY  L  +   ++  GY      VLLD  EEE
Sbjct: 515 DTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEE 564


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 245/455 (53%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V+W+++I G+       E   LF++ML   +      +V S L+ C   +D+  
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S I  DL   N+L+ MYAK G ++ A    DE++ KD +SY A++S    
Sbjct: 326 GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLS---- 381

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                      G VQN + E    + ++MQA  + P+  T+ S+
Sbjct: 382 ---------------------------GCVQNGKAEEAFLVFKKMQACNMEPDIATMVSL 414

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ GK  HG  +         +  ++ID YAK G +  +++VFD+   R +
Sbjct: 415 IPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDV 474

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF  M N G  PD VTF  +++AC+HSGLV +    F+ 
Sbjct: 475 VSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDT 534

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+ +YGI P +EHY CMV +L+R   + EA +F+  MP+K   +VWGALL    I  +++
Sbjct: 535 MTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNID 594

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + ++ PE TGN+++++N++S AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 595 LGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEIN 654

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S   S  IY  L+ ++  +++ GY
Sbjct: 655 GSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGY 689



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/509 (22%), Positives = 214/509 (42%), Gaps = 97/509 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+WN+M+AGY+  G Y    A   +M +   LRP+  T+VS+L    Q   +  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 61  GMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G  +H + + + ++ +   + I  AL+ MYAKC  L YA  +   M  +++V++SA+I G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           +++   + +A +LF+ M   GL                                 +A ++
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFL------------------------------SATSV 310

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +S   + +  ++L  G ++H    K+    ++  + +++  YAK G ++ A   FD    
Sbjct: 311 ASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVD 292
           +  I + A++S    +G A +A  +F +M    ++PD  T  +++ AC+H      G   
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
               I   ++ +  I  S      ++ + ++  +I  + +   KMP +     W  ++ G
Sbjct: 431 HGSVIIRGLALETSICNS------LIDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAG 483

Query: 353 ASISGDVELGK--------------------FVC--------------DHLFEIEPENTG 378
             I G   LGK                    F+C               H F+      G
Sbjct: 484 YGIHG---LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 379 ------NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTS 432
                 +YI M +L ++ G  DEA +  + M        P ++ +   G L        +
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSM--------PLKADVRVWGALLGACRIHKN 592

Query: 433 GDKSEQIYLILERLLGLMREEGYVLLDEV 461
            D  +Q+  I+++ LG      +VLL  +
Sbjct: 593 IDLGKQVSRIIQK-LGPEGTGNFVLLSNI 620



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 166/363 (45%), Gaps = 42/363 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D  ++N++I  YS  G +     L+R ML   V  P+  T   VL+AC    D+  G  +
Sbjct: 64  DARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA-PNKYTFPFVLKACSALVDLRAGRTI 122

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H     + +  DL++  ALI +Y +C     AR +  +M  +D V+++A+++GY  HG  
Sbjct: 123 HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMY 182

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                         H A+  L+      G+RPNA T+ S+  L 
Sbjct: 183 ------------------------------HHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +    L  G  IH Y ++   ++N   + + TA++D YAK   L  A RVF     R+ +
Sbjct: 213 AQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV 272

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA-VLSACAHSGLVDKAWDIFNA 300
            W+A+I  +      ++A +LF +ML  G+     T  A  L  CA    +     + +A
Sbjct: 273 TWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQL-HA 331

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  + GI   +     ++ + ++A  I+EAT F  ++ VK +      + YGA +SG V+
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT------ISYGALLSGCVQ 385

Query: 361 LGK 363
            GK
Sbjct: 386 NGK 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 6/251 (2%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           KD+  +   +  ++  G +  A  +F  +  P    +NA+I          A +DL R M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
               V PN  T   +    S   +L+ G+ IH +A       +++V+TA+ID Y +    
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSA 284
             A+ VF +   R ++ W A+++ YA HG    A++   +M ++ G++P+  T  ++L  
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHY---ACMVGVLSRARRISEATEFVSKMPVKP 341
            A  G + +   I +A   +  ++ + E       ++ + ++ +++  A      MPV+ 
Sbjct: 212 LAQHGALFQGTSI-HAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 342 SAKVWGALLYG 352
               W AL+ G
Sbjct: 271 DV-TWSALIGG 280


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 258/473 (54%), Gaps = 49/473 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN++I+GY+  G  +E   LF+EM+ + V +PD  T+V+V+ AC QS  I  G +
Sbjct: 198 KDVVSWNAIISGYADTGNNKEALDLFKEMMKTNV-KPDESTMVTVVSACAQSGSIQLGRQ 256

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH+++ +  +  +L I NALI +Y+KCG                                
Sbjct: 257 VHSWIDDHGLGSNLKIVNALIDLYSKCGE------------------------------- 285

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A  LFQ +    + +WN +I G    N ++  L L +EM  SG  PN VT+ SI   
Sbjct: 286 VETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPA 345

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIY-------VATAIIDTYAKTGFLHGAQRVFDRFK 236
            +    +  G+ IH Y      D+ I        + T++ID YAK G +  A +VF+   
Sbjct: 346 CAQLGAIDFGRWIHVYI-----DKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMH 400

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R+L    A+I  +A HG A+ A  +F+ M  NGI+PD +TF  +LSAC+HSG++D    
Sbjct: 401 HRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRR 460

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           IF +M+  Y I P +EHY CM+ +L       EA E ++ M ++P   +W +LL    + 
Sbjct: 461 IFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMH 520

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+VELG+     L +IEPEN G+Y++++N+Y+ AGRW+E   +R  + + G+ K+PG S 
Sbjct: 521 GNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSS 580

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           IE    +  F+  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 581 IEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 208/437 (47%), Gaps = 40/437 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +++ WN+M  G++          L+  M++  +L P+  T   +L++C +      G ++
Sbjct: 67  NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLL-PNSYTFPFLLKSCAKLKVSKEGQQI 125

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++   ++DL++  +LI MY K G    A  + D  S +D VSY+A+I+GY   G++
Sbjct: 126 HGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYI 185

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  +F  +    + +WNA+ISG      ++  LDL +EM  + V+P+  T+ ++ S  
Sbjct: 186 ESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSAC 245

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +++ G+++H +   +    N+ +  A+ID Y+K G +  A  +F     + +I W 
Sbjct: 246 AQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWN 305

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----------K 293
            +I  Y       +A+ LF EML +G  P+ VT  ++L ACA  G +D           +
Sbjct: 306 TMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKR 365

Query: 294 AWDIFNAMS----------------GQYGIQPSVEHY---AC--MVGVLSRARRISEATE 332
              + NA S                  + +  S+ H    AC  M+   +   R + A +
Sbjct: 366 IKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFD 425

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANL 386
             S+M    ++P    +  LL   S SG ++LG+ +   +   ++I P+   +Y  M +L
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPK-LEHYGCMIDL 484

Query: 387 YSQAGRWDEADRVREQM 403
               G + EA+ +   M
Sbjct: 485 LGHLGLFKEAEEMINTM 501



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 16/207 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN+MI GY+    Y+E   LF+EML S    P+ VT++S+L AC Q   I F
Sbjct: 296 LSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTMLSILPACAQLGAIDF 354

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G  +H + I+  IK    + NA      LI MYAKCG ++ A  + + M  +   + +A+
Sbjct: 355 GRWIHVY-IDKRIK---GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAM 410

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-----QASG 169
           I G+ +HG    A D+F  M++ G+   +    GL+    H  +LDL R +     Q   
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYK 470

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEI 196
           + P       +  L  H    K  +E+
Sbjct: 471 ITPKLEHYGCMIDLLGHLGLFKEAEEM 497



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 135/284 (47%), Gaps = 11/284 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+ +F+ ++ P L  WN +  G   ++   + + L   M + G+ PN+ T   +    + 
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G++IHG+ +K  Y+ ++YV T++I  Y K G    A +VFD    R ++ +TA+
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ YA+ G    A  +F+E+       D V++ A++S  A +G   +A D+F  M  +  
Sbjct: 176 ITGYASRGYIESAQKMFDEI----PVKDVVSWNAIISGYADTGNNKEALDLFKEMM-KTN 230

Query: 307 IQPSVEHYACMVGVLSRARRIS---EATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++P       +V   +++  I    +   ++    +  + K+  AL+   S  G+VE   
Sbjct: 231 VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA- 289

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
             C     +  ++  ++  M   Y+    + EA  + ++M  SG
Sbjct: 290 --CGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSG 331


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 253/477 (53%), Gaps = 48/477 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ +WN++I  Y+      +   +F  ML+     PD  T   +++A  +  ++  G   
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+  +  D++I N+LI  YAKCG L                       GY V    
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGL---------------------GYRV---- 193

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                 F    R  + +WN++I+  VQ    E  L+L +EM+   V+PN +T+  + S  
Sbjct: 194 ------FVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  S+ + G+ +H Y  +NR   ++ ++ A++D Y K G +  A+R+FD+   + ++ WT
Sbjct: 248 AKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWT 307

Query: 245 AIISAYAA------------HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
            ++  YA             HG    A++LF++M  + ++P+ VTFT +L AC+H GLV+
Sbjct: 308 TMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVE 367

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +    FN M   YG+ P V+HYACMV +L RA  + EA E + KMP+ P+A VWGALL  
Sbjct: 368 EGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGA 427

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
            +I  +V L +  C  L E+EP N G Y++++N+Y++AG+WD    +R+ M++ GL K P
Sbjct: 428 CTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEP 487

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G S IE  G +  F+  D S   +++IY  L+ ++  +   GYV     LL  VEEE
Sbjct: 488 GCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEE 544



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 33/273 (12%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RD+VSWNSMI  + QGG  EE   LF+EM    V +P+G+T+V VL AC + SD  FG 
Sbjct: 199 RRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV-KPNGITMVGVLSACAKKSDFEFGR 257

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH+++  + I   L + NA++ MY KCGS++ A+ L D+M +KD VS++ ++ GY   G
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             + A                    GL  +   +  + L  +MQ   V+PNAVT ++I  
Sbjct: 318 EYDAA-------------------QGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILC 358

Query: 183 LFSHFSNLKGGKEIHG-----YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK- 236
             SH   ++ G+         Y V       +     ++D   + G L  A  + ++   
Sbjct: 359 ACSHVGLVEEGRTFFNQMELVYGVLP----GVKHYACMVDILGRAGLLEEAVELIEKMPM 414

Query: 237 GRSLIIWTAIISAYAAHGD---ASKAVSLFNEM 266
             +  +W A++ A   H +   A +A S   E+
Sbjct: 415 APAASVWGALLGACTIHENVVLAEQACSQLIEL 447



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 152/365 (41%), Gaps = 52/365 (14%)

Query: 107 DEVSYSAIISGYMVHGF--VEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVR 163
           D  S S +I+   +  F  ++ A  +F  +  P L TWN +I     + N H+++L  +R
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            +  S   P+  T   +    S    L  GK  HG  +K     ++++  ++I  YAK G
Sbjct: 126 MLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCG 185

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L    RVF     R ++ W ++I+A+   G   +A+ LF EM    ++P+ +T   VLS
Sbjct: 186 ELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLS 245

Query: 284 ACA-----------HSGL----VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
           ACA           HS +    + ++  + NAM   Y    SVE    +   +     +S
Sbjct: 246 ACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVS 305

Query: 329 EATEFV---------------------------SKM---PVKPSAKVWGALLYGASISGD 358
             T  V                           SKM    VKP+A  +  +L   S  G 
Sbjct: 306 WTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGL 365

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
           VE G+   + +   + + P    +Y  M ++  +AG  +EA  + E+M  +  A + G  
Sbjct: 366 VEEGRTFFNQMELVYGVLP-GVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGAL 424

Query: 416 WIECS 420
              C+
Sbjct: 425 LGACT 429



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 13/66 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECK------------ALFREMLNSPVLRPDGVTVVSV 48
           M ++DIVSW +M+ GY++ G Y+  +            ALF +M    V +P+ VT  ++
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKV-KPNAVTFTNI 356

Query: 49  LQACGQ 54
           L AC  
Sbjct: 357 LCACSH 362


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 249/421 (59%), Gaps = 8/421 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VS+N+ I+G  Q G       +F+++L S    P+ VT+VS+L AC +   I FG +
Sbjct: 255 KNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQ 314

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVHG 122
           +H  V++  I  D  +  AL+ MY+KCG   +A  +  E+S  ++ V+++++I+G M++G
Sbjct: 315 IHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNG 374

Query: 123 FVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             + A++LF+ ++  GL    +TWN +ISG  Q  +         +MQ++GV  +  +I+
Sbjct: 375 QSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSIT 434

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--K 236
           S+    S  S L+ GKEIHG+ ++   D + +++TA+ID Y K G  + A+RVF +F  K
Sbjct: 435 SLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIK 494

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
                 W A+IS Y  +G    A  +FN+M    +QP+  T  ++LS C+H+G +D+ W 
Sbjct: 495 PDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQ 554

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F  M+  YG+ P+ EH+ CMV +L R+ R+ EA E + +MP + S  V+ +LL      
Sbjct: 555 LFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHH 613

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            D  LG+ +   L E+EP++   ++I++N+Y+  GRW + +RVRE M + GL K PG S 
Sbjct: 614 SDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSS 673

Query: 417 I 417
           I
Sbjct: 674 I 674



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 204/426 (47%), Gaps = 74/426 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++ S N  I+G+S+ G++ E    F++ +     RP+ VT+ SVL AC   + +  
Sbjct: 154 MPHRNLPSLNVTISGFSRNGYFREALGAFKQ-VGLGNFRPNSVTIASVLPAC---ASVEL 209

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH   I+  ++ D+++  A++ MY+ CG L  A+ + D++ DK+ VSY+A I     
Sbjct: 210 DGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFI----- 264

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVRPNAVTISS 179
                                     SGL+QN     V D+ ++ +++SG  PN+VT+ S
Sbjct: 265 --------------------------SGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVS 298

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-R 238
           I S  S    ++ G++IHG  VK   + +  V TA++D Y+K G  H A  +F    G R
Sbjct: 299 ILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSR 358

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L+ W ++I+    +G +  AV LF ++   G++PD  T+  ++S  +  G V +A+  F
Sbjct: 359 NLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFF 418

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M                 GV++  + I+      S +    SA   G  ++G +I  +
Sbjct: 419 HKMQS--------------AGVIASLKSITSLLRACSAL----SALQSGKEIHGHTIRTN 460

Query: 359 VELGKFV----------CDH---------LFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           ++  +F+          C H          F+I+P++   +  M + Y + G++  A  +
Sbjct: 461 IDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEI 520

Query: 400 REQMKE 405
             QM+E
Sbjct: 521 FNQMQE 526



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 184/418 (44%), Gaps = 66/418 (15%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           +S    IA     GFY E  +L+ ++ +S VL     T   +L+A  + +  + G  +H 
Sbjct: 59  ISMKRDIAKLVSNGFYREALSLYSKLHSSSVLE-HKFTFPFLLKASAKLNSPLQGQILHT 117

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            +I++   +D++   AL  MY K   L YA  + +EM  ++                   
Sbjct: 118 QLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRN------------------- 158

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                       L + N  ISG  +N      L   +++     RPN+VTI+S+    + 
Sbjct: 159 ------------LPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACAS 206

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              L G  ++H  A+K   + +IYVATA++  Y+  G L  A++VFD+   ++++ + A 
Sbjct: 207 V-ELDG--QVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAF 263

Query: 247 ISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAH----------SGLVDKAW 295
           IS    +G       +F ++L ++G  P+ VT  ++LSAC+            GLV K  
Sbjct: 264 ISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIE 323

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
             F+ M G             +V + S+      A     ++    +   W +++ G  +
Sbjct: 324 INFDTMVG-----------TALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMML 372

Query: 356 SGDVELGKFVCDHLFE-IEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           +G  +    +   LFE +EPE    ++  +  M + +SQ G+  EA +   +M+ +G+
Sbjct: 373 NGQSD----IAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGV 426



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQV-MKRPGLSTWNAVISGLVQNNR 154
           A+AL  E S  D +     I G M      K   +F++ MKR         I+ LV N  
Sbjct: 24  AKAL--ETSKADTLREREKIHGLMXGLQWRKKTAVFEISMKRD--------IAKLVSNGF 73

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +   L L  ++ +S V  +  T   +    +  ++   G+ +H   +K  +  +IY ATA
Sbjct: 74  YREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATA 133

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           + D Y K   L  A +VF+    R+L      IS ++ +G   +A+  F ++     +P+
Sbjct: 134 LADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPN 193

Query: 275 PVTFTAVLSACA 286
            VT  +VL ACA
Sbjct: 194 SVTIASVLPACA 205


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 254/462 (54%), Gaps = 43/462 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V W SMI+GY +     E   L+++M       PD VT+ +++ AC +  D+  
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKM-EEDGFSPDEVTMATLVSACAELKDLGV 198

Query: 61  GMEVHNFVIESHIK-MDLWIC----NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           GM++H     SHI+ MD+ IC    +AL+ MYAKCG L  AR + D++SDKD        
Sbjct: 199 GMKLH-----SHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKD-------- 245

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNA 174
                                  +  W+A+I G V+NNR    L L RE+   S +RPN 
Sbjct: 246 -----------------------VYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNE 282

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VTI ++ S  +   +L+ G+ +H Y  + +   ++ +  ++ID ++K G +  A+R+FD 
Sbjct: 283 VTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDS 342

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              + LI W ++++  A HG   +A++ F+ M    +QPD +TF  VL+AC+H+GLV + 
Sbjct: 343 MSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEG 402

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F  +   YG++   EHY CMV +L RA  ++EA EF+  MP++P   +WG++L    
Sbjct: 403 KKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACR 462

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           +  ++ELG+     L E+EP N G YI+++N+Y++   W+E  +VRE M E G+ K PG 
Sbjct: 463 VYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGC 522

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           S +       SF+A D S  +  +I ++L ++   ++  GYV
Sbjct: 523 SSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYV 564



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 184/399 (46%), Gaps = 39/399 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+++WNSM+  +            + EML      PD  T  S+L+ C    +   G  +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++  +  DL+I   L+ MYA CG L  AR L + M  +++V ++++ISGYM     
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYM----- 156

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                     +N+     L L ++M+  G  P+ VT++++ S  
Sbjct: 157 --------------------------KNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L  G ++H +  +        + +A+++ YAK G L  A++VFD+   + +  W+
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWS 250

Query: 245 AIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS- 302
           A+I  Y  +  +++A+ LF E+   + ++P+ VT  AV+SACA  G ++    + + ++ 
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS--GDVE 360
            Q G   S+ +   ++ + S+   I  A      M  K     W +++ G ++   G   
Sbjct: 311 TQKGHSVSLNN--SLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGLALHGLGREA 367

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           L +F      +++P+    +I +    S AG   E  ++
Sbjct: 368 LAQFHLMQTTDLQPDEI-TFIGVLTACSHAGLVQEGKKL 405


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 254/462 (54%), Gaps = 43/462 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V W SMI+GY +     E   L+++M       PD VT+ +++ AC +  D+  
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKM-EEDGFSPDEVTMATLVSACAELKDLGV 198

Query: 61  GMEVHNFVIESHIK-MDLWIC----NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           GM++H     SHI+ MD+ IC    +AL+ MYAKCG L  AR + D++SDKD        
Sbjct: 199 GMKLH-----SHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKD-------- 245

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNA 174
                                  +  W+A+I G V+NNR    L L RE+   S +RPN 
Sbjct: 246 -----------------------VYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNE 282

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VTI ++ S  +   +L+ G+ +H Y  + +   ++ +  ++ID ++K G +  A+R+FD 
Sbjct: 283 VTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDS 342

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              + LI W ++++ +A HG   +A++ F  M    +QPD +TF  VL+AC+H+GLV + 
Sbjct: 343 MSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEG 402

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F  +   YG++   EHY CMV +L RA  ++EA EF+  MP++P   +WG++L    
Sbjct: 403 KKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACR 462

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           +  ++ELG+     L ++EP N G YI+++N+Y++   W+E  +VRE M E G+ K PG 
Sbjct: 463 VYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGC 522

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           S +       SF+A D S  +  +I ++L ++   ++  GYV
Sbjct: 523 SSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYV 564



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 184/399 (46%), Gaps = 39/399 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+++WNSM+  +            + EML      PD  T  S+L+ C    +   G  +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++  +  DL+I   L+ MYA CG L  AR L + M  +++V ++++ISGYM     
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYM----- 156

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                     +N+     L L ++M+  G  P+ VT++++ S  
Sbjct: 157 --------------------------KNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L  G ++H +  +        + +A+++ YAK G L  A++VFD+   + +  W+
Sbjct: 191 AELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWS 250

Query: 245 AIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS- 302
           A+I  Y  +  +++A+ LF E+   + ++P+ VT  AV+SACA  G ++    + + ++ 
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS--GDVE 360
            Q G   S+ +   ++ + S+   I  A      M  K     W +++ G ++   G   
Sbjct: 311 TQKGHSVSLNN--SLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFALHGLGREA 367

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           L +F      +++P+    +I +    S AG   E  ++
Sbjct: 368 LAQFRLMQTTDLQPDEI-TFIGVLTACSHAGLVQEGKKL 405


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 247/471 (52%), Gaps = 37/471 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++IA   Q G  EE  A F  M++S  + PD  T  SVL+AC     +  
Sbjct: 444 MERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSR-MEPDDFTYGSVLKACAGRQALNT 502

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+H  +I+S +  D ++  AL+ MY KCG ++ A    D++ D+ E            
Sbjct: 503 GMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKA----DKIHDRTE------------ 546

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                          +  + +WNA+ISG     + E        M   GV P+  T +++
Sbjct: 547 ---------------QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAV 591

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ + +  GK+IH   +K     ++Y+ + ++D Y+K G +  +Q +F++   R  
Sbjct: 592 LDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDF 651

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A++  YA HG   +A+ LF  M    ++P+  TF +VL ACAH GLVDK    F+ 
Sbjct: 652 VTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDV 711

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YG+ P  EHY+CMV +L R+ RI EA   V KMP +  A +W  LL    I G+VE
Sbjct: 712 MLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVE 771

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +     L +++P+++   ++++N+Y+ AG W     +R+ M+ + L K PG SWIE  
Sbjct: 772 VAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELK 831

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEESA 466
             + +F+  D    + E+IY  L  L+G M+  GY     VLLDE  EE A
Sbjct: 832 DEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIPDCDVLLDEEVEEPA 882



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 148/286 (51%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNS+I+G+ Q G   +   +F EM    V   D  ++  VL+ACG   +   
Sbjct: 141 MPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGV-GFDRASLAVVLKACGALEECDM 199

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH  V++     D+   +AL+GMYAKC  LD + ++  E+ +K+ VS          
Sbjct: 200 GVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVS---------- 249

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+I+G VQN+R+   L+L +EMQ  GV  +    +S+
Sbjct: 250 ---------------------WSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASL 288

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S L+ GKE+H +A+K+ +  +I V TA +D YAK G +  AQ+V       SL
Sbjct: 289 FRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSL 348

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             + AII  YA      +A+  F  +L  G+  D +T +  L+ACA
Sbjct: 349 QSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACA 394



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 185/448 (41%), Gaps = 75/448 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++ VSW++MIAG  Q     E   LF+EM    V     +   S+ ++C   S +  
Sbjct: 242 LPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSI-YASLFRSCAALSALRL 300

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM----------------- 103
           G E+H+  ++S    D+ +  A + MYAKCG +  A+ +L  M                 
Sbjct: 301 GKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYAR 360

Query: 104 SDK------------------DEVSYSAIIS----------GYMVHGFVEK--------- 126
           SD+                  DE++ S  ++          G  VHG   K         
Sbjct: 361 SDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICV 420

Query: 127 ----------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
                           A DLF +M+R    +WNA+I+   QN   E  L     M  S +
Sbjct: 421 ANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRM 480

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
            P+  T  S+    +    L  G EIH   +K+    + +V  A++D Y K G +  A +
Sbjct: 481 EPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADK 540

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           + DR + ++++ W AIIS ++    +  A   F+ ML  G+ PD  T+ AVL  CA+   
Sbjct: 541 IHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLAT 600

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V     I   +  Q  +Q  V   + +V + S+   + ++     K P +     W A+L
Sbjct: 601 VGLGKQIHAQIIKQE-LQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFV-TWNAML 658

Query: 351 YGASISGDVE--LGKFVCDHLFEIEPEN 376
            G +  G  E  L  F    L  ++P +
Sbjct: 659 CGYAHHGLGEEALKLFESMQLVNVKPNH 686



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T   + Q C + + +  G + H  +I    +   ++ N L+ MY KC  LDYA  + D+M
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
             +D VSY++IISGY   G ++ A   F  M    + +WN+VISG +QN      +D+  
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           EM   GV  +  +++ +            G ++HG  VK  +D ++   +A++  YAK  
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L  +  VF     ++ + W+A+I+    +    + + LF EM   G+      + ++  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFR 290

Query: 284 ACAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS 342
           +CA    +    ++  +A+   +G    V      + + ++  R+++A + +S MP K S
Sbjct: 291 SCAALSALRLGKELHSHALKSAFGSDIIVG--TATLDMYAKCGRMADAQKVLSSMP-KCS 347

Query: 343 AKVWGALLYG 352
            + + A++ G
Sbjct: 348 LQSYNAIIVG 357


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 245/455 (53%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V+W+++I G+       E   LF++ML   +      +V S L+ C   +D+  
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S I  DL   N+L+ MYAK G ++ A    DE++ KD +SY A++S    
Sbjct: 326 GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLS---- 381

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                      G VQN + E    + ++MQA  + P+  T+ S+
Sbjct: 382 ---------------------------GCVQNGKAEEAFLVFKKMQACNMEPDIATMVSL 414

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ GK  HG  +         +  ++ID YAK G +  +++VFD+   R +
Sbjct: 415 IPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDV 474

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF  M N G  PD VTF  +++AC+HSGLV +    F+ 
Sbjct: 475 VSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDT 534

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+ +YGI P +EHY CMV +L+R   + EA +F+  MP+K   +VWGALL    I  +++
Sbjct: 535 MTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNID 594

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + ++ PE TGN+++++N++S AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 595 LGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEIN 654

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S   S  IY  L+ ++  +++ GY
Sbjct: 655 GSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGY 689



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 114/509 (22%), Positives = 214/509 (42%), Gaps = 97/509 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+WN+M+AGY+  G Y    A   +M +   LRP+  T+VS+L    Q   +  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 61  GMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G  +H + + + ++ +   + I  AL+ MYAKC  L YA  +   M  +++V++SA+I G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           +++   + +A +LF+ M   GL                                 +A ++
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFL------------------------------SATSV 310

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +S   + +  ++L  G ++H    K+    ++  + +++  YAK G ++ A   FD    
Sbjct: 311 ASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLVD 292
           +  I + A++S    +G A +A  +F +M    ++PD  T  +++ AC+H      G   
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
               I   ++ +  I  S      ++ + ++  +I  + +   KMP +     W  ++ G
Sbjct: 431 HGSVIIRGLALETSICNS------LIDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAG 483

Query: 353 ASISGDVELGK--------------------FVC--------------DHLFEIEPENTG 378
             I G   LGK                    F+C               H F+      G
Sbjct: 484 YGIHG---LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 540

Query: 379 ------NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTS 432
                 +YI M +L ++ G  DEA +  + M        P ++ +   G L        +
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSM--------PLKADVRVWGALLGACRIHKN 592

Query: 433 GDKSEQIYLILERLLGLMREEGYVLLDEV 461
            D  +Q+  I+++ LG      +VLL  +
Sbjct: 593 IDLGKQVSRIIQK-LGPEGTGNFVLLSNI 620



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 166/363 (45%), Gaps = 42/363 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D  ++N++I  YS  G +     L+R ML   V  P+  T   VL+AC    D+  G  +
Sbjct: 64  DARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA-PNKYTFPFVLKACSALVDLRAGRTI 122

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H     + +  DL++  ALI +Y +C     AR +  +M  +D V+++A+++GY  HG  
Sbjct: 123 HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMY 182

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                                         H A+  L+      G+RPNA T+ S+  L 
Sbjct: 183 ------------------------------HHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +    L  G  IH Y ++   ++N   + + TA++D YAK   L  A RVF     R+ +
Sbjct: 213 AQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV 272

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA-VLSACAHSGLVDKAWDIFNA 300
            W+A+I  +      ++A +LF +ML  G+     T  A  L  CA    +     + +A
Sbjct: 273 TWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQL-HA 331

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  + GI   +     ++ + ++A  I+EAT F  ++ VK +      + YGA +SG V+
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT------ISYGALLSGCVQ 385

Query: 361 LGK 363
            GK
Sbjct: 386 NGK 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 6/251 (2%)

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           KD+  +   +  ++  G +  A  +F  +  P    +NA+I          A +DL R M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
               V PN  T   +    S   +L+ G+ IH +A       +++V+TA+ID Y +    
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSA 284
             A+ VF +   R ++ W A+++ YA HG    A++   +M ++ G++P+  T  ++L  
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHY---ACMVGVLSRARRISEATEFVSKMPVKP 341
            A  G + +   I +A   +  ++ + E       ++ + ++ +++  A      MPV+ 
Sbjct: 212 LAQHGALFQGTSI-HAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 342 SAKVWGALLYG 352
               W AL+ G
Sbjct: 271 DV-TWSALIGG 280


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 253/459 (55%), Gaps = 4/459 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--I 58
           M  R++ +W   +A +S  G + E    FR M  S   RPD VT   +L A  Q     I
Sbjct: 123 MPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAI 181

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G E+H +   S +  ++ +  A+I MY KCG LD ARA  +E+  K+ V+++A+++ Y
Sbjct: 182 DQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNY 241

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTI 177
            + G   +A++LF+ M       WNA+I+   Q+ R +  LDL R M   + + P   T 
Sbjct: 242 KLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTF 301

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            ++  + +  S LK G+ IH       +D N+ V+ A++  Y K G L  A  VF   K 
Sbjct: 302 VTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 361

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +  I W  IIS+YA HG + +A+ L+ EM   G++P  VTF  +LSAC+H GLV    D 
Sbjct: 362 KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDY 421

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F  M   + I+PSV H+ C++ +L R  R++EA   +  MP++ +A  W +LL      G
Sbjct: 422 FYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG 481

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D++ G    D + +  P  +G Y++++N+Y+ AGRW + +++R+ M   G+ K PG+SWI
Sbjct: 482 DLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWI 541

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E    +  FV+ D+S  + E+IY+ L +++  M+  GYV
Sbjct: 542 EIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYV 580



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 166/391 (42%), Gaps = 57/391 (14%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE--SHIKMDLWICNALIGMYA 88
           ++L S  L  D V   ++++ CG ++ I     +H+ ++          ++ N LI MY 
Sbjct: 49  QLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYG 108

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           KCG L YAR L + M  ++            VH                   TW   ++ 
Sbjct: 109 KCGRLPYARELFESMPSRN------------VH-------------------TWTVAMAA 137

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIF--SLFSHFSNLKGGKEIHGYAVKNRYD 206
              N  H   L   R M  SG RP+ VT S I         + +  G+EIH YA  +   
Sbjct: 138 FSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLL 197

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            N+ V TA+I  Y K G L  A+  F+  + ++ + W A+++ Y   G   +A+ LF EM
Sbjct: 198 PNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM 257

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV------ 320
            +     D V + A+++A A  G   +A D++ +M     + P    +  ++ V      
Sbjct: 258 HD----ADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSA 313

Query: 321 LSRARRIS---EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           L + R I     AT F + + V  +       +YG     D  L  F   H  +++ E +
Sbjct: 314 LKQGRAIHARVRATNFDANLLVSNAL----VHMYGKCGCLDEALDVF---HSMKLKDEIS 366

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            N II +  Y+  G  D+A  + ++M   G+
Sbjct: 367 WNTIISS--YAYHGHSDQALLLYQEMDLQGV 395



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 8/207 (3%)

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           ++A  +I+ Y K G L  A+ +F+    R++  WT  ++A++ +G  S+A+  F  M  +
Sbjct: 98  FLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQS 157

Query: 270 GIQPDPVTFTAVL--SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
           G +PD VTF+ +L   A   +  +D+  +I +  +   G+ P+V     ++ +  +  R+
Sbjct: 158 GERPDRVTFSVILAAIAQMGAAAIDQGREI-HRYARISGLLPNVVVGTAVISMYGKCGRL 216

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387
            +A     ++  K S   W A++    + G     +   +   E+   ++  +  M   Y
Sbjct: 217 DDARAAFEELQWKNSV-TWNAMMTNYKLDGR---DREALELFREMHDADSVCWNAMIAAY 272

Query: 388 SQAGRWDEA-DRVREQMKESGLAKIPG 413
           +Q GR  +A D  R     + LA   G
Sbjct: 273 AQHGRGKQALDLYRSMHDTTDLAPKQG 299


>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 484

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 245/453 (54%), Gaps = 8/453 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFGME 63
           D+VSW + IA  ++ G      A    ML+SP    P+ VT+++VL AC  +        
Sbjct: 30  DVVSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARP 89

Query: 64  VHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           +   +           L +C  L   Y        A  L   M+ +  V+Y+ +I+G M 
Sbjct: 90  LALSLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMR 149

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V  A ++F  M  P   +W A+I G V+N RH+  +D    M   GV P+ VT+ + 
Sbjct: 150 NGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAA 209

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G  +H    + R + NI +A ++ID YA+ G +  A++VFD  + R++
Sbjct: 210 ISACAEVGALGLGMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTV 269

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I  +AA+G  + A+  F  M   G +PD VTFT VL+AC+H+GL D+    + A
Sbjct: 270 VSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKA 329

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI   +EHY C+V +L RA R+ EA   V+ MP++P+  V GALL G  + GDV+
Sbjct: 330 MRAEHGITARMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLAGCRMHGDVD 389

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + + +  HL E +P    NY++++N+Y+  G+WD A +VR  MK  G+ K PGRS +E  
Sbjct: 390 MAEQLMQHLLEQDPGGDSNYVLLSNIYAATGKWDGAGKVRGLMKARGVKKRPGRSAVEID 449

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           G +  FV  D S  ++++++     +LGL+  E
Sbjct: 450 GDVHEFVCGDRSHPQADEVF----DMLGLLSHE 478



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R +VSWNSMI G++  G   +    F E +     RPD VT   VL AC  +     
Sbjct: 264 MRNRTVVSWNSMIVGFAANGRCTDAIEHF-EAMRRKGFRPDAVTFTGVLTACSHAGLTDE 322

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+  +  +   H    +M+ + C  ++ +  + G L  A +++  M  + +EV   A+++
Sbjct: 323 GLRYYKAMRAEHGITARMEHYGC--VVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLA 380

Query: 117 GYMVHGFVEKAMDLFQ 132
           G  +HG V+ A  L Q
Sbjct: 381 GCRMHGDVDMAEQLMQ 396


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/431 (35%), Positives = 240/431 (55%), Gaps = 15/431 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S    V WN+ I GYS+        +LF  M  S  + PD  T  S+++AC +   +  
Sbjct: 131 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV-PDKFTYPSLIKACSKVCGVKE 189

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+  H   +   +  D+++  +LI +Y KCG +  AR + DEM +++ VS++A+I+GY  
Sbjct: 190 GVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYAS 249

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-------------A 167
              + +A  LF  M      +WNA+ISG V+     +   +  EM              +
Sbjct: 250 FSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALIS 309

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLH 226
             V+P+   + S+ S  S   +L+  K +  Y  K+  D    +V  A+ID  AK G + 
Sbjct: 310 GNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMD 369

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A ++F+    R LI + +++   + HG   +AVSLF+ MLN G+ PD V FT +L+AC+
Sbjct: 370 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 429

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
            +GLVD+    F +M   Y I PS +HYACMV +L RA R+ EA E +  MPV+P A  W
Sbjct: 430 RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAW 489

Query: 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           GALL    +  D+ELG+ V D LFE+EP+N GNY++++N+Y+ A +W +   +R +M+E 
Sbjct: 490 GALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRER 549

Query: 407 GLAKIPGRSWI 417
           G+ KIPG SWI
Sbjct: 550 GIRKIPGCSWI 560



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 161/377 (42%), Gaps = 62/377 (16%)

Query: 36  PVLRPDGVT--VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93
           P LR    T  + ++L+AC  +S +    +VH  +I   +  D +I +  + +   C SL
Sbjct: 65  PTLRSFDTTSSISTLLKACTTTSTL---EQVHARIIRKGLHQDHFIISQFLTL---CNSL 118

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
                           SY+                 +F  +  P    WN  I G  +N 
Sbjct: 119 S-------------NFSYTT---------------SVFNGVSSPSTVLWNTYIKGYSENY 150

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
                + L   M+ S   P+  T  S+    S    +K G   HG AV+     +++V T
Sbjct: 151 SVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMT 210

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           ++ID Y K G +  A++VFD    R+++ WTA+I+ YA+  D  +A  LF+EM     + 
Sbjct: 211 SLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM----PEK 266

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           + V++ A++S     G +  A  +F+ M                     R R +   +  
Sbjct: 267 NAVSWNAIISGYVKCGDLRSARKMFDEMP-------------------HRNRDVVAWSAL 307

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA--NLYSQAG 391
           +S   VKP   +  +L+   S  G +EL K+V D++ +   +    ++I A  ++ ++ G
Sbjct: 308 ISG-NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCG 366

Query: 392 RWDEADRVREQMKESGL 408
             D A ++ E+M +  L
Sbjct: 367 SMDRATKLFEEMPKRDL 383


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 249/421 (59%), Gaps = 8/421 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VS+N+ I+G  Q G       +F+++L S    P+ VT+VS+L AC +   I FG +
Sbjct: 195 KNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQ 254

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVHG 122
           +H  V++  I  D  +  AL+ MY+KCG   +A  +  E+S  ++ V+++++I+G M++G
Sbjct: 255 IHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNG 314

Query: 123 FVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             + A++LF+ ++  GL    +TWN +ISG  Q  +         +MQ++GV  +  +I+
Sbjct: 315 QSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSIT 374

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--K 236
           S+    S  S L+ GKEIHG+ ++   D + +++TA+ID Y K G  + A+RVF +F  K
Sbjct: 375 SLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIK 434

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
                 W A+IS Y  +G    A  +FN+M    +QP+  T  ++LS C+H+G +D+ W 
Sbjct: 435 PDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQ 494

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F  M+  YG+ P+ EH+ CMV +L R+ R+ EA E + +MP + S  V+ +LL      
Sbjct: 495 LFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHH 553

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            D  LG+ +   L E+EP++   ++I++N+Y+  GRW + +RVRE M + GL K PG S 
Sbjct: 554 SDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSS 613

Query: 417 I 417
           I
Sbjct: 614 I 614



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 204/426 (47%), Gaps = 74/426 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++ S N  I+G+S+ G++ E    F++ +     RP+ VT+ SVL AC   + +  
Sbjct: 94  MPHRNLPSLNVTISGFSRNGYFREALGAFKQ-VGLGNFRPNSVTIASVLPAC---ASVEL 149

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH   I+  ++ D+++  A++ MY+ CG L  A+ + D++ DK+ VSY+A I     
Sbjct: 150 DGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFI----- 204

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVRPNAVTISS 179
                                     SGL+QN     V D+ ++ +++SG  PN+VT+ S
Sbjct: 205 --------------------------SGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVS 238

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-R 238
           I S  S    ++ G++IHG  VK   + +  V TA++D Y+K G  H A  +F    G R
Sbjct: 239 ILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSR 298

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L+ W ++I+    +G +  AV LF ++   G++PD  T+  ++S  +  G V +A+  F
Sbjct: 299 NLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFF 358

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M                 GV++  + I+      S +    SA   G  ++G +I  +
Sbjct: 359 HKMQS--------------AGVIASLKSITSLLRACSAL----SALQSGKEIHGHTIRTN 400

Query: 359 VELGKFV----------CDH---------LFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
           ++  +F+          C H          F+I+P++   +  M + Y + G++  A  +
Sbjct: 401 IDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEI 460

Query: 400 REQMKE 405
             QM+E
Sbjct: 461 FNQMQE 466



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 182/412 (44%), Gaps = 66/412 (16%)

Query: 13  IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESH 72
           IA     GFY E  +L+ ++ +S VL     T   +L+A  + +  + G  +H  +I++ 
Sbjct: 5   IAKLVSNGFYREALSLYSKLHSSSVLE-HKFTFPFLLKASAKLNSPLQGQILHTQLIKTG 63

Query: 73  IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQ 132
             +D++   AL  MY K   L YA  + +EM  ++                         
Sbjct: 64  FHLDIYAATALADMYMKLHLLSYALKVFEEMPHRN------------------------- 98

Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
                 L + N  ISG  +N      L   +++     RPN+VTI+S+    +    L G
Sbjct: 99  ------LPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASV-ELDG 151

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
             ++H  A+K   + +IYVATA++  Y+  G L  A++VFD+   ++++ + A IS    
Sbjct: 152 --QVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQ 209

Query: 253 HGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAH----------SGLVDKAWDIFNAM 301
           +G       +F ++L ++G  P+ VT  ++LSAC+            GLV K    F+ M
Sbjct: 210 NGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTM 269

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            G             +V + S+      A     ++    +   W +++ G  ++G  ++
Sbjct: 270 VG-----------TALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDI 318

Query: 362 GKFVCDHLFE-IEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
                  LFE +EPE    ++  +  M + +SQ G+  EA +   +M+ +G+
Sbjct: 319 AV----ELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGV 366


>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 271/475 (57%), Gaps = 15/475 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP----DGVTVVSVLQACGQSSD 57
           S R++VS+N++I+  ++ G   E   +F  +     L P    D   VVSV  AC     
Sbjct: 128 SSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVALDRFAVVSVASACAGMGA 187

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +    E+H  V+ S +++ + + NA++  Y+K G ++ AR L ++MS +D VS++++I+G
Sbjct: 188 LRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAG 247

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y     +++A+ +F +M       W A+ISG  QN   +A LDL ++M   G+ P    +
Sbjct: 248 YCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFAL 307

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFDR 234
            S     +    +  G+E+HG+ ++ R      NI++  A+ID Y+K G +  A  VF R
Sbjct: 308 VSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFAR 367

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R  I W ++++ ++ +G   +++++F  ML+  +QP  VTF AVL+AC+H+GLV   
Sbjct: 368 MSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLVTDG 427

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKP-SAKVWGALLY 351
             I  +M   +G++P  EHYA  +  L R  ++ EA+EF+  +   + P +   WGALL 
Sbjct: 428 RRILESMQ-YHGVEPRAEHYASFIDALGRNHQLEEASEFIKGLSSRIGPGTTGSWGALLG 486

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
              + G+ E+ + V + LF++EP N+G Y++++N+Y+ AG+WD+A R+R  MKE GL K 
Sbjct: 487 ACRVHGNTEIAEKVAESLFQLEPGNSGRYVMLSNIYAAAGQWDDARRIRAIMKEKGLRKD 546

Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESA 466
              SWIE       FVA DTS  ++ +IY +L+RL   MR    V++D VE++ A
Sbjct: 547 QACSWIEVRSAKHMFVADDTSHCEANEIYGMLDRLFDYMR----VVVDPVEDQLA 597



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 49/238 (20%)

Query: 1   MSKRDIVSWNSMIAGY-------------------------------SQGGFYEECKALF 29
           MS +D VSW SMIAGY                                Q G  +    LF
Sbjct: 233 MSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLF 292

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGM 86
           ++ML    + P    +VS L AC +   +  G EVH F++   I +D   ++I NALI M
Sbjct: 293 QQMLVEG-MAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDM 351

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLSTW 142
           Y+KCG +  A  +   MS++D +S++++++G+  +G  ++++ +F+ M     +P   T+
Sbjct: 352 YSKCGDMATAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTF 411

Query: 143 NAVIS-----GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
            AV++     GLV + R      ++  MQ  GV P A   +S          L+   E
Sbjct: 412 LAVLTACSHAGLVTDGRR-----ILESMQYHGVEPRAEHYASFIDALGRNHQLEEASE 464



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 176/408 (43%), Gaps = 44/408 (10%)

Query: 44  TVVSVLQACGQSSDIVF-GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE 102
           TV+ +++      D+ + G   H  ++++ +     + N LI +YA   S   +R   ++
Sbjct: 33  TVLHLIERAISLGDVRYLGRAAHALLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFED 92

Query: 103 MSDKDEVSYSAIISGYMV-HGFVEKAMDLFQVMKRP--GLSTWNAVISGLVQNNRH-EAV 158
           +  ++  SY+ +++        +  A+ L   M      + ++N +IS L +N R  EA+
Sbjct: 93  LPYRNAHSYNNLLAALSRGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEAL 152

Query: 159 LDLVREMQASGVRP----NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
               R  +   + P    +   + S+ S  +    L+  +E+HG  V +  +  + +A A
Sbjct: 153 RVFARLARDRCLGPEVALDRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIMANA 212

Query: 215 IIDTYAKTGFLHGAQ-------------------------------RVFDRFKGRSLIIW 243
           ++D Y+K G +  A+                               RVF     +  I W
Sbjct: 213 MVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAW 272

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMS 302
           TA+IS +  +G+   A+ LF +ML  G+ P P    + L ACA  GLV +  ++    + 
Sbjct: 273 TALISGHEQNGEEDAALDLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILR 332

Query: 303 GQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            + G+ P ++  +  ++ + S+   ++ A    ++M  +     W +++ G S +G  + 
Sbjct: 333 RRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFARMSERDFIS-WNSMVTGFSHNGQGKQ 391

Query: 362 GKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              +   + + E + T   ++ +    S AG   +  R+ E M+  G+
Sbjct: 392 SLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLVTDGRRILESMQYHGV 439



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD +SWNSM+ G+S  G  ++  A+F+ ML++ V +P  VT ++VL AC  +  +  
Sbjct: 368 MSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEV-QPTYVTFLAVLTACSHAGLVTD 426

Query: 61  G------MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G      M+ H   +E   +      +AL   +    + ++ + L   +      S+ A+
Sbjct: 427 GRRILESMQYHG--VEPRAEHYASFIDALGRNHQLEEASEFIKGLSSRIGPGTTGSWGAL 484

Query: 115 ISGYMVHGFVE----KAMDLFQVMKRPGLSTWNAVISGL 149
           +    VHG  E     A  LFQ+   PG S    ++S +
Sbjct: 485 LGACRVHGNTEIAEKVAESLFQL--EPGNSGRYVMLSNI 521


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 263/481 (54%), Gaps = 51/481 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+++W+++IAGY+Q G  +E    F++M+      P+ VT++S+L AC     +  GME+
Sbjct: 359 DVITWSAVIAGYAQRGCSQEALDAFQQMILDGS-EPNSVTIISLLSACASLGALSQGMEI 417

Query: 65  HNFVIESHI------------KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
           H + ++  +              DL + NALI MY+KC S   AR++ D +  ++     
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRER---- 473

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGV 170
                                     + TW  +I G  Q       L +  EM  +   V
Sbjct: 474 -------------------------NVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAV 508

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIY-VATAIIDTYAKTGFLHGA 228
            PNA TIS I    +H + L+ GK+IH Y  ++  Y+ ++Y VA  +ID Y+K G +  A
Sbjct: 509 APNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTA 568

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           + VFD    R+ + WT+++S Y  HG   +A+ +F++M   G  PD ++F  +L AC+HS
Sbjct: 569 RNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHS 628

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G+VD+  + F+ M   Y +  S EHYAC++ +L+R  R+ +A + + +MP++PSA +W A
Sbjct: 629 GMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVA 688

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           LL    +  +VEL ++  + L  ++ EN G+Y +++N+Y+ A RW +  R+R+ MK+SG+
Sbjct: 689 LLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGI 748

Query: 409 AKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
            K PG SW++   G  SF   D S   S +IY +LERL+G ++  GYV      L +V++
Sbjct: 749 KKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDD 808

Query: 464 E 464
           E
Sbjct: 809 E 809



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 194/379 (51%), Gaps = 27/379 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQSSDIV 59
           D++SWNS++A + +G        LF EM       +   R D +++V++L AC     + 
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              E+H++ I +    D ++CNALI  YAKCGS++ A  + + M  KD VS++A+++GY 
Sbjct: 277 QIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYT 336

Query: 120 VHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
             G    A +LF+ M++  +     TW+AVI+G  Q    +  LD  ++M   G  PN+V
Sbjct: 337 QSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSV 396

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKN------------RYDRNIYVATAIIDTYAKTG 223
           TI S+ S  +    L  G EIH Y++K                 ++ V  A+ID Y+K  
Sbjct: 397 TIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCR 456

Query: 224 FLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFT 279
               A+ +FD    + R+++ WT +I  YA +GD++ A+ +F+EM++    + P+  T +
Sbjct: 457 SFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTIS 516

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMP 338
            +L ACAH   +     I   ++  +  +PSV   A C++ + S+   +  A      MP
Sbjct: 517 CILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 339 VKPSAKVWGALLYGASISG 357
            K +   W +++ G  + G
Sbjct: 577 -KRNEVSWTSMMSGYGMHG 594



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 147/298 (49%), Gaps = 29/298 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN ++  + + G  +    +   ML +   +PD  T+   L+ACG+      G  +H 
Sbjct: 115 VWWNLLVREHIKEGHLDRAIGVSCRMLRAGT-KPDHFTLPYALKACGELPSYCCGRALHG 173

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGF 123
            +  +  + ++++CNAL+ MY++CGSL+ A  + DE++ K   D +S+++I++ ++    
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A++LF  M                          ++   +A+  R + ++I +I   
Sbjct: 234 PRTALELFSEM-------------------------SMIVHEKATNERSDIISIVNILPA 268

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L   KEIH YA++N    + +V  A+IDTYAK G ++ A +VF+  + + ++ W
Sbjct: 269 CASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSW 328

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            A+++ Y   G+   A  LF  M    I  D +T++AV++  A  G   +A D F  M
Sbjct: 329 NAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 114/260 (43%), Gaps = 19/260 (7%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           + +++ Y+  G  + A+ + + +       WN ++   ++    +  + +   M  +G +
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P+  T+           +   G+ +HG    N ++ N++V  A++  Y++ G L  A  V
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 232 FDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEM------LNNGIQPDPVTFTAVL 282
           FD    + +   I W +I++A+    +   A+ LF+EM           + D ++   +L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSV--EHYAC--MVGVLSRARRISEATEFVSKMP 338
            ACA    + +  +I +     Y I+     + + C  ++   ++   +++A +  + M 
Sbjct: 267 PACASLKALPQIKEIHS-----YAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVME 321

Query: 339 VKPSAKVWGALLYGASISGD 358
            K     W A++ G + SG+
Sbjct: 322 FKDVVS-WNAMVTGYTQSGN 340


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 170/528 (32%), Positives = 278/528 (52%), Gaps = 63/528 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL-------------RPDGVT--- 44
           M +R++VSW SM+ GY Q G  EE + LF EM    V+             R D      
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLF 168

Query: 45  -------VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
                  VV V    G    +    E      E  ++ +++    ++  YAK G +D AR
Sbjct: 169 DMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR-NVFTWTTMVSGYAKNGRVDVAR 227

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM----------------------- 134
            L + M +++EVS++A++ GY   G +++A +LF+ M                       
Sbjct: 228 KLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHR 287

Query: 135 --------KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                   K     TWNA+I    +       L L   MQ  GV  N  ++ S+ S+ + 
Sbjct: 288 ARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCAS 347

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            ++L  G+++H   V++ +D+++YVA+ +I  Y K G L  A+ +F+RF  + +++W ++
Sbjct: 348 LASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSM 407

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ Y+ HG   +A+++F++M ++G+QPD VTF  VLSAC++SG V + ++IF AM   Y 
Sbjct: 408 ITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQ 467

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           ++P +EHYACMV +L RA R+ EA E V KMP++P A VWGALL        ++L +   
Sbjct: 468 VEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAV 527

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
           + L ++EP+N G Y++++++Y+  GRW + + +R+++    + K PG SWIE    +  F
Sbjct: 528 EKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMF 586

Query: 427 VAKDT-SGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAY 467
              D+ S  +   I  +LE+L G +RE GY      VL D  EEE  +
Sbjct: 587 TGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTH 634



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 12/225 (5%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           NA++  Y +      A  L D+M  ++ VS++ +ISGY+ +G V  A  +F VM    + 
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV 115

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W +++ G VQ    E    L  EM     R N V+ + +       S +   K++    
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMP----RRNVVSWTVMIGGLLKESRIDDAKKLFDMI 171

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
                ++++ V T +I  Y + G L  A+ +FD  K R++  WT ++S YA +G    A 
Sbjct: 172 P----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVAR 227

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
            LF  M     + + V++TA+L     SG + +A+++F AM  ++
Sbjct: 228 KLFEVM----PERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKW 268



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 25/217 (11%)

Query: 197 HGYAVKNRYD----RNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSLIIWTAIISAY 250
           +GYA   R      R++   T+ I  Y + G +H A++VFD      R++  W A++SAY
Sbjct: 3   YGYAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAY 62

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
                   A+ LF++M     Q + V+F  ++S    +G+V  A  +F+ M      + +
Sbjct: 63  FESHKPRDALLLFDQM----PQRNTVSFNGMISGYVKNGMVADARKVFDVMP-----ERN 113

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF 370
           V  +  MV    +   + EA +   +MP + +   W  ++ G      ++  K     LF
Sbjct: 114 VVSWTSMVRGYVQEGMVEEAEKLFWEMP-RRNVVSWTVMIGGLLKESRIDDAK----KLF 168

Query: 371 EIEPENTGNYIIMANL---YSQAGRWDEADRVREQMK 404
           ++ PE   + +++ N+   Y Q GR DEA  + ++MK
Sbjct: 169 DMIPEK--DVVVVTNMIGGYCQVGRLDEARELFDEMK 203


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g18840-like [Cucumis
            sativus]
          Length = 1096

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 258/457 (56%), Gaps = 3/457 (0%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            + + D+V+WN+MI+G+ Q G+ EE   LF  M +  V   +  T  SVL AC     +  
Sbjct: 640  LEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEH-TFASVLSACSNLRSLKL 698

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G EVH +V+++ +  + +IC+ L+ +Y KC ++ YA+++  E+  ++  S +++I GY  
Sbjct: 699  GKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSS 758

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             G + +A  LF  +     + W A+  G V+  + EAV +L+ E +     P+ + + SI
Sbjct: 759  QGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISI 818

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                +  + L  GK+IH Y ++     +  + ++++D Y+K G +  A+R+F     +  
Sbjct: 819  IGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDS 878

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            II+  +I+ YA HG  ++AV LF EM+ +G +PD +TF A+LSAC H GLV+     F++
Sbjct: 879  IIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDS 938

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            MS  Y I P ++HYACM+ +  RA ++ +A EF+ K+P++  A +WGA L    I+G+ E
Sbjct: 939  MSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAE 998

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            L +   D L  IE EN   Y+ +AN+Y+  G W+E  R+R++MK   + K  G SW+   
Sbjct: 999  LARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVE 1058

Query: 421  GGLQSFVAKDTSGDKSEQIYLILERLLG--LMREEGY 455
                 F++ D    K+E IY  L  L    L REE +
Sbjct: 1059 SKFHVFISGDRFHSKNEAIYSTLASLTDELLYREEAF 1095



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 215/481 (44%), Gaps = 82/481 (17%)

Query: 4   RDIVSWNSMIAGYSQG-GFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIVFG 61
           +D+V++NSM++GY++  G+  +    F EM  +P ++R D  T++++L    +   I +G
Sbjct: 506 KDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYG 565

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALLDEMSDKDEVSYSAIISGYMV 120
            ++H+F++++   + ++  ++LI MY+KCG    A R         D VS +A+++    
Sbjct: 566 KQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCR 625

Query: 121 HGFVEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            G ++ A+DLF + +++  +  WN +ISG VQN   E  L L   M    V  N  T +S
Sbjct: 626 EGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFAS 685

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT----------------- 222
           + S  S+  +LK GKE+H Y +KNR   N ++ + ++D Y K                  
Sbjct: 686 VLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQN 745

Query: 223 --------------GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                         G +  A+++FD    ++  +WTA+   Y           L +E   
Sbjct: 746 VYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRK 805

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----- 323
               PD +   +++ ACA    +     I + M  + GI+   +  + +V + S+     
Sbjct: 806 EAKVPDVLILISIIGACAIQAALVPGKQIHSYML-RAGIKLDTKLTSSLVDMYSKCGSII 864

Query: 324 -ARRI-------------------------SEATEFVSKMP---VKPSAKVWGALLYGAS 354
            A RI                         +EA +   +M     KP A  + ALL    
Sbjct: 865 YAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACR 924

Query: 355 ISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
             G VELG+   D +   + I PE   +Y  M +LY   GR ++ D+  E M+     KI
Sbjct: 925 HGGLVELGEHFFDSMSNDYNICPE-IDHYACMIDLY---GRANQLDKALEFMR-----KI 975

Query: 412 P 412
           P
Sbjct: 976 P 976



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 170/382 (44%), Gaps = 76/382 (19%)

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+  H   I+S     +++ N LI  YAK G L+ A+ L DEM +++  S++AII+ Y+ 
Sbjct: 430 GLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVK 489

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA-VLDLVREMQASG--VRPNAVTI 177
              + +A  LF       L T+N+++SG  +++ ++   L    EMQ +   +R +  T+
Sbjct: 490 SHNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTL 549

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF----- 232
            ++ +L +    +  GK++H + +K   D  ++ A+++ID Y+K GF   A RV+     
Sbjct: 550 ITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGE 609

Query: 233 ----------------------------DRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
                                          +   ++ W  +IS +  +G   +++ LF 
Sbjct: 610 VVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFV 669

Query: 265 EMLNNGIQPDPVTFTAVLSACAH--------------------------SGLVDKAWDIF 298
            M +  +  +  TF +VLSAC++                          SGLVD      
Sbjct: 670 RMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCN 729

Query: 299 N-----AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           N     +++ +  +Q      + +VG  S+   ++EA +    +  K SA VW AL +G 
Sbjct: 730 NMRYAKSVNSELRMQNVYSITSMIVGYSSQG-NMAEARKLFDSLDEKNSA-VWTALFFGY 787

Query: 354 SISGDVELGKFVCDHLFEIEPE 375
                V+L +  C+ +FE+  E
Sbjct: 788 -----VKLQQ--CEAVFELLSE 802



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           +F    +LK G   H   +K+ +   I+++  +I  YAK G L+ AQ++FD    R++  
Sbjct: 420 VFHEMKHLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFS 479

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           W AII+AY    +  +A +LF    ++ +  D VT+ ++LS  A S
Sbjct: 480 WNAIIAAYVKSHNLRQARALF----DSAVCKDLVTYNSMLSGYARS 521


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 251/451 (55%), Gaps = 6/451 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKA--LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           DIVSW  +I+ Y      + CKA  +F  + +S  LRPD   VV  + ACG   D+  G 
Sbjct: 67  DIVSWTCLISLYLHTS--QPCKAFSIFSHLFHSG-LRPDSFCVVGAVSACGHRKDLSNGR 123

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH  V    +  D  + NALI MY++ G+++ A ++   M  KD  S++++++G++   
Sbjct: 124 IVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCN 183

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
            +E A  +F  M      +W A+I+G VQ       L+L +EM+A G   P  +TI ++ 
Sbjct: 184 DIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVL 243

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +       G  +HGY  K   D ++ V  A++D YAK+G L  A ++F     R + 
Sbjct: 244 SGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVF 303

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT +IS  A HG  + A+  F++M  +G+ P+ VT  +VLSAC+H+GLV +   +F  M
Sbjct: 304 SWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKM 363

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              +GI+P ++HY CMV +L RA  + EA E +  MP+KP + +W +LL    + G++ L
Sbjct: 364 VQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLAL 423

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +     + E+EP++ G YI++ N+Y  A RW++A + R+ M++  + K PG SW+E +G
Sbjct: 424 AEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNG 483

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
            +  F+A+D        +Y +LE +   M++
Sbjct: 484 VVHEFLAEDAVHCIRADVYTVLEAITEQMKD 514



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 33/261 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW +MI GY QG        LF+EM       P  +T+V+VL  C        
Sbjct: 195 MPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +V ++++ +D+ + NAL+ MYAK G+L  A  +  EM  +D  S++ +ISG  +
Sbjct: 255 GSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLAL 314

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A++ F                                +M  SGV PN VT+ S+
Sbjct: 315 HGKGTHALEAFS-------------------------------DMSKSGVVPNEVTLLSV 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  SH   +  G+ +    V+ +     I     ++D   + G L  A+ + +    + 
Sbjct: 344 LSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKP 403

Query: 240 -LIIWTAIISAYAAHGDASKA 259
             +IW +++SA   HG+ + A
Sbjct: 404 DSVIWRSLLSACLVHGNLALA 424



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 46/313 (14%)

Query: 86  MYAKCGSLDYARAL------LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           +  KCGSL+  + +      L  +  K +     +++ Y   G    A  +F  ++ P +
Sbjct: 9   LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDI 68

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            +W  +IS  +  ++      +   +  SG+RP++  +    S   H  +L  G+ +HG 
Sbjct: 69  VSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 128

Query: 200 AVKNRYDRNIYVATAIIDTYAKTG----------------------FLHG---------A 228
             +     +  V  A+ID Y+++G                       L+G         A
Sbjct: 129 VFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAA 188

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAH 287
           +R+FD    R+ + WTA+I+ Y         + LF EM   G   P  +T  AVLS CA 
Sbjct: 189 RRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCAD 248

Query: 288 SGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
            G    A+D+ +++ G   +  +   V     ++ + +++  +  A +   +MP K    
Sbjct: 249 IG----AFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP-KRDVF 303

Query: 345 VWGALLYGASISG 357
            W  ++ G ++ G
Sbjct: 304 SWTTMISGLALHG 316


>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
          Length = 820

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 154/494 (31%), Positives = 271/494 (54%), Gaps = 46/494 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M ++D+V+WN +I+GY Q G  E+  A++  +++    L+ D VT+ +++ A  ++ ++ 
Sbjct: 324 MFEKDVVTWNLLISGYVQQGLVED--AIYMCQLMRLEKLKYDCVTLATLMSAAARTENLK 381

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G EV        ++ D+ + +  + MYAKCGS+  A+ + D   +KD + ++ +++ Y 
Sbjct: 382 LGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 441

Query: 120 VHGFVEKAMDLFQVMK---------------------------------------RPGLS 140
             G   +A+ LF  M+                                        P L 
Sbjct: 442 ESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLI 501

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W  +++G+VQN   E  +  +R+MQ SG+RPNA +I+   S  ++ ++   G+ IHGY 
Sbjct: 502 SWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYI 561

Query: 201 VKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           ++N R+  +  + T+++D YAK G ++ A+RVF+      L ++ A+ISAYA  G+ ++A
Sbjct: 562 IRNLRHSSSASIETSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGNVTEA 621

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           V+L+  + + G +PD +TFT++LSAC H+G +D+A  +F  M   +G++P +EHY  +V 
Sbjct: 622 VALYRSLEDMGXKPDSITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYGLLVD 681

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           + + A+   +A   + +MP KP  ++  +L+   +     EL  ++   L E EPE +GN
Sbjct: 682 LFASAKETDKALRLMEEMPYKPDXRMIQSLVASCNKQHKTELVDYLSRQLLETEPEXSGN 741

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG---GLQSFVAKDTSGDKS 436
           Y+ ++N Y+  G WDE  + RE MK  GL K PG SWI+  G   G+  FVA D +  ++
Sbjct: 742 YVTISNAYAVEGSWDEVVKTREMMKAKGLKKKPGCSWIQIKGEEEGVHVFVANDKTHVRN 801

Query: 437 EQIYLILERLLGLM 450
           ++I  IL  LL  M
Sbjct: 802 DEIQRILALLLTDM 815



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 200/406 (49%), Gaps = 38/406 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    V  P  VTV + L A    + +  
Sbjct: 223 IPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGV-EPTRVTVSTCLSASANMAGVEE 281

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + +++D  +  +L+  Y K G ++YA  + D M +KD V+++ +ISGY+ 
Sbjct: 282 GTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQ 341

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A+ + Q+M+   L                               + + VT++++
Sbjct: 342 QGLVEDAIYMCQLMRLEKL-------------------------------KYDCVTLATL 370

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GKE+     ++  + +I +A+  +D YAK G +  A++VFD    + L
Sbjct: 371 MSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDL 430

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF EM    + P+ +T+  ++ +   +  V++A ++F  
Sbjct: 431 ILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQ 490

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  + +     EA  F+ KM    ++P+A      L  ++   
Sbjct: 491 MQSS-GITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLA 549

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRVRE 401
               G+ +  ++      ++   I   + ++Y++ G  ++A+RV E
Sbjct: 550 SXHFGRSIHGYIIRNLRHSSSASIETSLVDMYAKCGDINKAERVFE 595



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 191/409 (46%), Gaps = 39/409 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 125 RNVFSWAAIIGVKCRMGLCEGALMGFVEMLENEIF-PDNFVVPNVFKACGALQWSRFGRG 183

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V+++ ++  +++ ++L  MY KCG LD AR + DE+ +++ V+             
Sbjct: 184 VHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA------------- 230

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++ G VQN  +E  + L+ +M+  GV P  VT+S+  S 
Sbjct: 231 ------------------WNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSA 272

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++ + ++ G + H  A+ N  + +  + T++++ Y K G +  A+ +FDR   + ++ W
Sbjct: 273 SANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTW 332

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +IS Y   G    A+ +   M    ++ D VT   ++SA A +  +    ++      
Sbjct: 333 NLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEV-QCXCF 391

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV-ELG 362
           ++ ++  +   +  + + ++   I +A + V    V+    +W  LL   + SG   E  
Sbjct: 392 RHSLESDIVLASTAMDMYAKCGSIVDAKK-VFDSTVEKDLILWNTLLAAYAESGHSGEAL 450

Query: 363 KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           +   +   E  P N  T N II++ L  +    +EA  +  QM+ SG+ 
Sbjct: 451 RLFYEMQLESVPPNVITWNLIILSRL--RNAEVNEAKEMFLQMQSSGIT 497



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 155/355 (43%), Gaps = 53/355 (14%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN-----ALIGMYAKCGSLDYARALLDE 102
           +LQ C    D+  G ++H  ++++    DL+  N      L+  YAKC  L+ A  L  +
Sbjct: 65  ILQGCVYERDLCTGKQIHARILKNG---DLYARNEYIETKLVIFYAKCDDLEIAEVLFSK 121

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           +  ++  S++AII      G  E A+                   G V            
Sbjct: 122 LRVRNVFSWAAIIGVKCRMGLCEGAL------------------MGFV------------ 151

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            EM  + + P+   + ++F         + G+ +HGY +K   +  ++VA+++ D Y K 
Sbjct: 152 -EMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKC 210

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G L  A++VFD    R+++ W A++  Y  +G   +A+ L ++M  +G++P  VT +  L
Sbjct: 211 GVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCL 270

Query: 283 SACAHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           SA A+   V++     A  I N +     +  S+ ++ C VG++       E  E +   
Sbjct: 271 SASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLI-------EYAEMIFDR 323

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
             +     W  L+ G    G VE   ++C  L  +E     + + +A L S A R
Sbjct: 324 MFEKDVVTWNLLISGYVQQGLVEDAIYMC-QLMRLEKLKY-DCVTLATLMSAAAR 376



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N   +  L LV EM    +R        I     +  +L  GK+I
Sbjct: 22  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQI 81

Query: 197 HGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y RN Y+ T ++  YAK   L  A+ +F + + R++  W AII      G
Sbjct: 82  HARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKCRMG 141

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
               A+  F EML N I PD      V  AC
Sbjct: 142 LCEGALMGFVEMLENEIFPDNFVVPNVFKAC 172


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 246/453 (54%), Gaps = 46/453 (10%)

Query: 27  ALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE-SHIKMDLWICNALIG 85
           +L+  +L    L+P+G T  S+ +ACG    +  G  +H  V++      D ++  AL+ 
Sbjct: 93  SLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLN 152

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
            YAKCG +   R L +++S                               +P L++WN++
Sbjct: 153 YYAKCGKVGACRYLFNQIS-------------------------------KPDLASWNSI 181

Query: 146 ISGLVQNN--------RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
           +S  V N+            VL L  EMQ S ++ N VT+ ++ S  +    L  G   H
Sbjct: 182 LSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAH 241

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
            Y +K+    N +V TA+ID Y+K G L  A ++FD+   R  + + A+I  +A HG   
Sbjct: 242 VYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 301

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           +A+ LF +M   G+ PD VT    + +C+H GLV++  D+F +M   YG++P +EHY C+
Sbjct: 302 QALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCL 361

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           V +L RA R+ EA E V  MP+KP+A +W +LL  A + G++E+G+ V  HL ++EPE +
Sbjct: 362 VDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS 421

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE 437
           GNY++++N+Y+   RWD+  RVR+ MK+ G+ K+PG S +E  G +  F+  D +  +S+
Sbjct: 422 GNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSK 481

Query: 438 QIYLILERLLGLMREEGY------VLLDEVEEE 464
           +IYL LE +   + E G+      VL D  EEE
Sbjct: 482 EIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEE 514



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 140/293 (47%), Gaps = 58/293 (19%)

Query: 1   MSKRDIVSWNSMIAGY--SQGGFYE------ECKALFREMLNSPVLRPDGVTVVSVLQAC 52
           +SK D+ SWNS+++ Y  + G   E      E   LF EM  S +++ + VT+V+++ AC
Sbjct: 170 ISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKS-LIKANEVTLVALISAC 228

Query: 53  GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
            +   +  G   H +V++ ++K++ ++  ALI MY+KCG LD A  L D++  +D + Y+
Sbjct: 229 AELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYN 288

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
           A+I G+ +HG+  +A+DLF                               ++M   G+ P
Sbjct: 289 AMIGGFAIHGYGHQALDLF-------------------------------KKMTLEGLAP 317

Query: 173 NAVTISSIFSLFSHFSNLKGG-------KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
           + VT+       SH   ++ G       KE++G   K  +         ++D   + G L
Sbjct: 318 DDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEH------YGCLVDLLGRAGRL 371

Query: 226 HGA-QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
             A +RV +     + +IW +++ A   HG+    + +   +L + IQ +P T
Sbjct: 372 REAEERVLNMPMKPNAVIWRSLLGAARVHGN----LEIGEVVLKHLIQLEPET 420



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 150/339 (44%), Gaps = 21/339 (6%)

Query: 84  IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG---FVEKAMDLFQVMKRPGLS 140
           + +  KC +LD  + +   M     + ++  +S  ++         A+ +F  +  P + 
Sbjct: 13  LQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIF 72

Query: 141 TWNAVISGL--VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
            +N +IS L  ++ + H A     R +  + ++PN  T  S+F        L+ G+ +H 
Sbjct: 73  LYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHT 132

Query: 199 YAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA- 256
           + +K      + +V  A+++ YAK G +   + +F++     L  W +I+SAY  +  A 
Sbjct: 133 HVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAI 192

Query: 257 -------SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK-AWDIFNAMSGQYGIQ 308
                   + ++LF EM  + I+ + VT  A++SACA  G + + AW     +     + 
Sbjct: 193 CEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLN 252

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS--GDVELGKFVC 366
             V     ++ + S+   +  A +   ++P + +   + A++ G +I   G   L  F  
Sbjct: 253 HFVG--TALIDMYSKCGCLDLACQLFDQLPHRDTL-CYNAMIGGFAIHGYGHQALDLFKK 309

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             L  + P++    + M +  S  G  +E   V E MKE
Sbjct: 310 MTLEGLAPDDVTLVVTMCSC-SHVGLVEEGCDVFESMKE 347


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 256/453 (56%), Gaps = 33/453 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSWNS+I  +S  G   E   LF EM  S  L+PDG+TV+++L AC     +  G  +
Sbjct: 314 DLVSWNSLINAFSADGLLSEAMVLFSEMRYSS-LKPDGITVMALLCACVGCDALRQGRSI 372

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+++++  +  D+ +CN+LI MY +C  LD+                             
Sbjct: 373 HSYLVKLGLGGDVMVCNSLISMYTRC--LDF----------------------------- 401

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             AMD+F       + TWN++++  VQ+   E V  L R + +S    + ++++++ S  
Sbjct: 402 PSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSAS 461

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLIIW 243
           +     +  K++H YA K     +  ++ A+IDTYAK G L  A ++F+    GR +  W
Sbjct: 462 AELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSW 521

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           +++I  YA  G A +A+ LF  M N G++P+ VTF  VL AC+  GLVD+    ++ M  
Sbjct: 522 SSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYSIMEP 581

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +YGI P+ EH +C++ +L+RA R+SEA +FV +MP +P   +W  LL  +    DVE+GK
Sbjct: 582 EYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDVEMGK 641

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
              + +  I+P ++  Y+++ N+Y+ +G W+E  R+++ M+ SG+ K PG+SWI+  G L
Sbjct: 642 RAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLKGEL 701

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           + F+ +D S  +S+++Y +L+ +   M + GY+
Sbjct: 702 KVFIVEDRSHPESDEMYTMLDLIGFEMVKAGYI 734



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 143/287 (49%), Gaps = 34/287 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW ++IA ++Q     +   LF  ML      PD   + S ++AC +  D+  
Sbjct: 106 MLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGT-APDEFALGSAVRACAELGDLGL 164

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH   I+S     L + NAL+ MY+K GS+    AL + + DKD             
Sbjct: 165 GRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKD------------- 211

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISS 179
                             L +W ++I+GL Q  R    L + REM A G+  PN     S
Sbjct: 212 ------------------LFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGS 253

Query: 180 IFSLFSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +F   S   N L+ G++IHG  VK + DRN Y   ++ D YA+   L  A +VF R +  
Sbjct: 254 VFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESP 313

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            L+ W ++I+A++A G  S+A+ LF+EM  + ++PD +T  A+L AC
Sbjct: 314 DLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCAC 360



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 43/259 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V+WNS++    Q    E+   LFR +L+S +   D +++ +VL A  +        +
Sbjct: 414 RDVVTWNSILTACVQHRHMEDVFKLFR-LLHSSMPSLDRISLNNVLSASAELGYFEMAKQ 472

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYMVHG 122
           VH +  +  +  D  + NALI  YAKCGSLD A  L + M + +D  S+S++I GY   G
Sbjct: 473 VHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFG 532

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           + ++A+DLF  M+                                 GV+PN VT   +  
Sbjct: 533 YAKEALDLFARMRN-------------------------------LGVKPNHVTFVGVLI 561

Query: 183 LFSHFSNLKGGKEIHG-----YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             S    +  G   +      Y +    +      + +ID  A+ G L  A +  D+   
Sbjct: 562 ACSRVGLVDEGCYYYSIMEPEYGIVPTKEH----CSCVIDLLARAGRLSEAAKFVDQMPF 617

Query: 238 R-SLIIWTAIISAYAAHGD 255
              +I+W  +++A   H D
Sbjct: 618 EPDIIMWNTLLAASRTHND 636



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+ SW+S+I GY+Q G+ +E   LF  M N  V +P+ VT V VL AC +   +  G  
Sbjct: 516 RDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGV-KPNHVTFVGVLIACSRVGLVDEGCY 574

Query: 64  VHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVH 121
            ++ +  E  I      C+ +I + A+ G L  A   +D+M  + D + ++ +++    H
Sbjct: 575 YYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTH 634

Query: 122 GFVE 125
             VE
Sbjct: 635 NDVE 638



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           RN  ++  +I  Y +      A+ VFD    R+ + W A+I+A+A +   + A+ LF+ M
Sbjct: 78  RNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSM 137

Query: 267 LNNGIQPDPVTFTAVLSACAHSG 289
           L  G  PD     + + ACA  G
Sbjct: 138 LRLGTAPDEFALGSAVRACAELG 160


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 259/463 (55%), Gaps = 9/463 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN--SPVLRPDGVTVVSVLQACGQSSDI 58
           M K ++VS+NS+I+G    GF +E   +F+ ML   S VL  D  T+VS++ +C      
Sbjct: 106 MPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLF-DEFTLVSLVGSCASLGAP 164

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
               +VH   I   +  ++ I NALI  Y KCG  D + ++   M ++D VS++++++ Y
Sbjct: 165 ELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAY 224

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                +E A  LF  M+     +W A+I+G  QN R +  L L  +M+  G+ P+A T +
Sbjct: 225 AQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFA 284

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNR---YDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           S+ S  +  + +  GKEIHG+ +++    Y  NI++  A+ID Y K G +  A  +F   
Sbjct: 285 SVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGM 344

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             + ++ W ++I+ +A +G   +++++F  M+   I+P+ VTF  +LSAC H+GLV +  
Sbjct: 345 HEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGL 404

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV--WGALLYGA 353
            I ++M   YG+ P  +HYA M+ +L R  R+ EA   + + P K S  V  WGALL   
Sbjct: 405 RILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAP-KGSDHVGMWGALLGAC 463

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I G+++L +   + LF++EP N   Y+++ N+Y+ A RWDEA +VR  M E GL K   
Sbjct: 464 RIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAA 523

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            SWIE       FVAK+ S  +  ++Y ++  L+  M + GY+
Sbjct: 524 CSWIEVRNTRHQFVAKERSHCQINEVYEVIHNLVDQMYDSGYL 566



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 185/421 (43%), Gaps = 53/421 (12%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           +  E L+S  L P      S++  C  +  +  G  +H+  I++ +    ++ N LI  Y
Sbjct: 2   VLNETLSS--LDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFY 59

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           +KC S+  A  +   +  K+  S++ IIS Y   G   +A +L   M +P L ++N++IS
Sbjct: 60  SKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLIS 119

Query: 148 GLVQNNRHEAVLDLVREM--QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           GL  +   +  L++ + M  Q S V  +  T+ S+    +     +  +++HG A+    
Sbjct: 120 GLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGL 179

Query: 206 DRNIYVATAIIDTYAKTG-------------------------------FLHGAQRVFDR 234
           + NI +  A+ID Y K G                                L  A  +F +
Sbjct: 180 NSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQ 239

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            + ++ + WTA+I+ +A +G   +A+ LF +M   GI P   TF +VLSACA   L+ + 
Sbjct: 240 MQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARG 299

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLS-------RARRISEATEFVSKMPVKPSAKVWG 347
            +I   +     I+ +   Y C + +L+       +  ++  AT     M  K     W 
Sbjct: 300 KEIHGHI-----IRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVS-WN 353

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS---QAGRWDEADRVREQMK 404
           +L+ G + +G  E    V + +  IE +   N++    L S     G   E  R+ + M+
Sbjct: 354 SLITGFAQNGHGEESLAVFERM--IEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSME 411

Query: 405 E 405
           +
Sbjct: 412 K 412



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 125/297 (42%), Gaps = 39/297 (13%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           S + P     SS+ S      +LK GK +H + +K       ++A  +ID Y+K   +  
Sbjct: 8   SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A +VF     ++   W  IISAY+  G  ++A +L ++M     +P+ V++ +++S   H
Sbjct: 68  AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQM----PKPNLVSYNSLISGLGH 123

Query: 288 SGLVDKAWDIFNAMSGQYG-------IQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
            G   ++ ++F  M  Q            S+      +G     R++  A   +    + 
Sbjct: 124 HGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIG---LN 180

Query: 341 PSAKVWGALL--YGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEAD 397
            +  +  AL+  YG     D+         +F   PE +  ++  M   Y+QA R ++A 
Sbjct: 181 SNIIIGNALIDAYGKCGEPDISFS------IFSRMPERDVVSWTSMVAAYAQASRLEDAH 234

Query: 398 RVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
            +  QM+E         SW     G     A++  GD++  ++         MREEG
Sbjct: 235 WLFSQMQEKNTV-----SWTALIAGF----AQNGRGDEALHLF-------EQMREEG 275


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 262/460 (56%), Gaps = 38/460 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++I+ + Q GF EE   L  EM     L  D VT  ++L A     ++  
Sbjct: 386 MLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFL-IDSVTATALLSAASNLRNLYV 444

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGY 118
           G + H ++I   I+ +  + + LI MYAK GS+  A  L ++   SD+D+ +++AII+GY
Sbjct: 445 GKQTHAYLIRRGIQFE-GMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGY 503

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G  EKA+ L + M              LVQN                 V PNAVT++
Sbjct: 504 TQNGLNEKAILLLKQM--------------LVQN-----------------VIPNAVTLA 532

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    S   ++   +++HG++++   ++N+YV T++ DTY+K G +  A+ VF R   +
Sbjct: 533 SILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEK 592

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + + +T ++  Y  HG   +A++L++ ML +GI+PD VTF A+LSAC +SGLVD+   IF
Sbjct: 593 NSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIF 652

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISG 357
            +M   + I+PS+EHY C+  +L R  R+ EA EFV  +    +  ++WG+LL      G
Sbjct: 653 ESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHG 712

Query: 358 DVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             ELGK V   L    ++    G +++++N+Y++ G W++ DRVR+QMKE GL K  G S
Sbjct: 713 HFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCS 772

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           W+E +G +  FV++D    +S +IY +L+ L   M+  GY
Sbjct: 773 WVEIAGFVNCFVSRDEKHPQSSEIYYMLDMLTLDMKYAGY 812



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 186/405 (45%), Gaps = 47/405 (11%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI  Y Q     E   +F + L S     D VT++SVL A  Q   I    + H FV
Sbjct: 292 WNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFV 351

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           I+S     + I NA++ MY++C  +D +  + D+M ++D VS++ IIS ++ +GF E+A 
Sbjct: 352 IKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEA- 410

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                                         L LV EMQ      ++VT +++ S  S+  
Sbjct: 411 ------------------------------LMLVCEMQKQKFLIDSVTATALLSAASNLR 440

Query: 189 NLKGGKEIHGYAVKNRYDRNIY---VATAIIDTYAKTGFLHGAQRVFDR--FKGRSLIIW 243
           NL  GK+ H Y ++    R I    + + +ID YAK+G +  A+ +F++     R    W
Sbjct: 441 NLYVGKQTHAYLIR----RGIQFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATW 496

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            AII+ Y  +G   KA+ L  +ML   + P+ VT  ++L AC+  G +  A  + +  S 
Sbjct: 497 NAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQL-HGFSI 555

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL-YGASISGDVELG 362
           +  ++ +V     +    S+   IS A     + P K S      ++ YG    G   L 
Sbjct: 556 RRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRALT 615

Query: 363 KFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
            +  D +    I P+    ++ + +  + +G  DE  ++ E M++
Sbjct: 616 LY--DSMLRSGIRPDAV-TFVAILSACNYSGLVDEGLQIFESMEK 657



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 42/296 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIV 59
           + +   V WNS+I G+       +   L+ +M  NS     D  T  S L+AC  + DI+
Sbjct: 75  LPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKACALTKDIL 134

Query: 60  FGMEVHNFVIESHIKMDL----WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
            G  +H+  + SH   +      + N+L+ MYA C                         
Sbjct: 135 TGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQH----------------------- 171

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                    E A+++F VM+R  +  WN +I   V+ NR+   ++    M    V P+ V
Sbjct: 172 ---------EYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPV 222

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
           T  ++F   S   + +  K  +G+  K  ++Y  +++V ++ I  ++  G +  A+ VFD
Sbjct: 223 TFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFD 282

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAVLSACAH 287
           R   ++  IW  +I AY  +    +A+ +F + L +  G+  D VT  +VL+A + 
Sbjct: 283 RCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGV-CDDVTLLSVLTAVSQ 337



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 35/290 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++V+WN++I  + +   Y +    F  M+N  V+ P  VT V++  A  +  D   
Sbjct: 181 MRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVM-PSPVTFVNLFPALSKLGDSRT 239

Query: 61  GMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
               + F+ +       D+++ ++ I M++  G +DYAR + D   +K+           
Sbjct: 240 VKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNT---------- 289

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTI 177
                                  WN +I   VQNN   EA+   ++ +++     + VT+
Sbjct: 290 ---------------------EIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTL 328

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+ +  S    +K  ++ H + +K+     I +  A++  Y++   +  + +VFD+   
Sbjct: 329 LSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLE 388

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           R  + W  IISA+  +G   +A+ L  EM       D VT TA+LSA ++
Sbjct: 389 RDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASN 438



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA--SGVRPNAVTISSIFSLF 184
           A+ L   + RP    WN+VI G + NN     L L  +M++  S    +  T SS     
Sbjct: 68  ALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKAC 127

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNI----YVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           +   ++  GK IH + +++  + N      V  ++++ YA     + A  VFD  + R++
Sbjct: 128 ALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQHEY-ALNVFDVMRRRNV 186

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + W  +I ++       +AV  F  M+N  + P PVTF  +  A +  G
Sbjct: 187 VAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLG 235


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 249/424 (58%), Gaps = 4/424 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN MI+GY +   +EE   ++R M      +P+  TVVS L AC    ++  
Sbjct: 169 MPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLEL 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H++ I + + +   + NAL+ MY KCG +  AR + D M  K+   ++++++GY++
Sbjct: 229 GKEIHDY-IANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVI 287

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +++A  LF+      +  W A+I+G VQ N  E  + L  EMQ  GV P+   + ++
Sbjct: 288 CGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTL 347

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +    L+ GK IH Y  +NR   +  V+TA+I+ YAK G +  +  +F+  K    
Sbjct: 348 LTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDT 407

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT+II   A +G  S+A+ LF  M   G++PD +TF AVLSAC H+GLV++   +F++
Sbjct: 408 TSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHS 467

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
           MS  Y I+P++EHY C + +L RA  + EA E V K+P + +     ++GALL      G
Sbjct: 468 MSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYG 527

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++++G+ +   L +++  ++  + ++A++Y+ A RW++  +VR +MK+ G+ K+PG S I
Sbjct: 528 NIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAI 587

Query: 418 ECSG 421
           E  G
Sbjct: 588 EVDG 591



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 195/470 (41%), Gaps = 112/470 (23%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N MI  + + G      +LF+++    V  PD  T   VL+  G   ++  G ++H FV
Sbjct: 76  YNLMIKAFVKRGSLRSAISLFQQLRERGVW-PDNYTYPYVLKGIGCIGEVREGEKIHAFV 134

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++ ++ D ++CN+L+ MYA+ G ++    + +EM ++D VS++ +ISGY          
Sbjct: 135 VKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGY---------- 184

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISSIFSLFSHF 187
                                V+  R E  +D+ R MQ  S  +PN  T+ S  S  +  
Sbjct: 185 ---------------------VRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVL 223

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD-------------- 233
            NL+ GKEIH Y + N  D    +  A++D Y K G +  A+ +FD              
Sbjct: 224 RNLELGKEIHDY-IANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMV 282

Query: 234 -----------------RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
                            R   R +++WTA+I+ Y        A++LF EM   G++PD  
Sbjct: 283 TGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKF 342

Query: 277 TFTAVLSACAH-----------------------------------SGLVDKAWDIFNAM 301
               +L+ CA                                     G ++K+ +IFN +
Sbjct: 343 IVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGL 402

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
                       +  ++  L+   + SEA E    M    +KP    + A+L     +G 
Sbjct: 403 KDM-----DTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGL 457

Query: 359 VELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           VE G+ +      ++ IEP N  +Y    +L  +AG   EA+ + +++ +
Sbjct: 458 VEEGRKLFHSMSSIYHIEP-NLEHYGCFIDLLGRAGLLQEAEELVKKLPD 506



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 133/285 (46%), Gaps = 17/285 (5%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +F  +  P L  +N +I   V+     + + L ++++  GV P+  T   +         
Sbjct: 64  IFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGE 123

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           ++ G++IH + VK   + + YV  +++D YA+ G + G  +VF+    R  + W  +IS 
Sbjct: 124 VREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISG 183

Query: 250 YAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
           Y       +AV ++  M + +  +P+  T  + LSACA    ++   +I + ++ +  + 
Sbjct: 184 YVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLT 243

Query: 309 P----SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           P    ++    C  G +S AR I +A      M VK +   W +++ G  I G ++  ++
Sbjct: 244 PIMGNALLDMYCKCGCVSVAREIFDA------MIVK-NVNCWTSMVTGYVICGQLDQARY 296

Query: 365 VCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
               LFE  P  +   +  M N Y Q   +++A  +  +M+  G+
Sbjct: 297 ----LFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGV 337



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 52/254 (20%)

Query: 182 SLFSHFSNLKGGKEI--HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           SL     ++   K+I  H +    + DR+I          +  G  + A R+F+     S
Sbjct: 13  SLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPS 72

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS--AC------------ 285
           L I+  +I A+   G    A+SLF ++   G+ PD  T+  VL    C            
Sbjct: 73  LFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHA 132

Query: 286 ---------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
                                A  GLV+    +F  M  +  +  ++     M+    R 
Sbjct: 133 FVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNI-----MISGYVRC 187

Query: 325 RRISEATEFVSKMPV----KPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENT 377
           +R  EA +   +M +    KP+     + L   ++  ++ELGK + D++    ++ P   
Sbjct: 188 KRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTP-IM 246

Query: 378 GNYIIMANLYSQAG 391
           GN ++  ++Y + G
Sbjct: 247 GNALL--DMYCKCG 258


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 251/462 (54%), Gaps = 32/462 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D++ WNS+I+GYS  G+  E  +LF  M     L  +  T+ ++L++   S    F
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEG-LEFNQTTLSTILKSTAGSQANGF 408

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH   I+S  + D ++ N+L+  Y KC  L+ A  + +    +D V+Y+++I+ Y  
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  E+A+ ++                                 MQ   ++P+A   SS+
Sbjct: 469 YGLGEEALKMYL-------------------------------RMQDRDIKPDAFIFSSL 497

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F+  ++ S  + GK+IH + +K     +++   ++++ YAK G +  A  +F+    R +
Sbjct: 498 FNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGI 557

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I   A HG   KA+ LF +ML NGI P+ +T  +VLSAC H+GLV +A   F  
Sbjct: 558 VSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGL 617

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P+ EHYACMV +L R  R+ EA   V +MP + SA VWGALL  A I  ++E
Sbjct: 618 MEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIE 677

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + L  +EPE +G +I++AN+Y+  G WD   +VR  MK S + K PG SWIE  
Sbjct: 678 LGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELK 737

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
             + +F+  D S  +S++IY+ L+ L   +   GYV + E +
Sbjct: 738 DKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETD 779



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 224/486 (46%), Gaps = 61/486 (12%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG--VTVVSVLQACGQSSDIV 59
           S+ D+VSW+++I+GY Q G  EE    + EM    +L   G   T  SVL+ C  + ++ 
Sbjct: 109 SEPDLVSWSALISGYVQNGRGEEALLTYYEMY---LLGAKGNEFTFSSVLKGCSLTRNLE 165

Query: 60  FGMEVHNF-----VIESHIKMDLW----ICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110
            G ++H       +I + I  + +    + NA  G+  +   +     L+    D D  S
Sbjct: 166 LGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFS 225

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
            +A++  Y   G  E A+ +F  + +P + +WNAVI+G V + +++  L L+ +M +  V
Sbjct: 226 ANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRV 285

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
            P+  T+SS     +    +K G+++H   +K   + + +V   +ID Y+K G L  A+ 
Sbjct: 286 APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARM 345

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-- 288
           VFD    + +I+W +IIS Y+  G   +A+SLF  M   G++ +  T + +L + A S  
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQA 405

Query: 289 -GLVDKAWDI------------FNAMSGQYG-------------IQPSVE--HYACMVGV 320
            G  ++   I             N++   YG             + P+ +   Y  M+  
Sbjct: 406 NGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITA 465

Query: 321 LSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEP 374
            S+     EA +   +M    +KP A ++ +L    +     E GK +  H+ +   +  
Sbjct: 466 YSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSD 525

Query: 375 ENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGD 434
              GN ++  N+Y++ G  D+A  +  ++   G+      SW    GGL    A+   G 
Sbjct: 526 VFAGNSLV--NMYAKCGSIDDASCIFNEISWRGIV-----SWSAMIGGL----AQHGHGR 574

Query: 435 KSEQIY 440
           K+ Q++
Sbjct: 575 KALQLF 580



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 157/316 (49%), Gaps = 15/316 (4%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S D+  GM +H  +I   +       N L+ +Y+KC     AR L+ + S+ D VS+SA+
Sbjct: 63  SKDVSSGMAIHARIIRLGLLGLR---NRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSAL 119

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISG--LVQN---NRHEAVLDLVREM 165
           ISGY+ +G  E+A+  +  M   G      T+++V+ G  L +N    +    + LV EM
Sbjct: 120 ISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEM 179

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
            ++G+ PN  ++S++ +  +   +   G ++HGY +K  YD + + A A++D YAK+G  
Sbjct: 180 ISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCP 239

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A  VF       ++ W A+I+    H     A+ L  +M +  + P   T ++ L AC
Sbjct: 240 EAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKAC 299

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A  GLV     + +A+  +  ++P       ++ + S+   + +A      MP K    V
Sbjct: 300 AAIGLVKLGRQLHSALM-KMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXK-DVIV 357

Query: 346 WGALLYGASISG-DVE 360
           W +++ G S  G D+E
Sbjct: 358 WNSIISGYSNCGYDIE 373


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 258/458 (56%), Gaps = 12/458 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQS 55
           M ++D+VSWN+M+  Y++ GF  +    +RE      LR  G+     +   +L  C + 
Sbjct: 143 MPEKDVVSWNTMVIAYAKSGFCNDALRFYRE------LRRLGIGYNEYSFAGLLNICVKV 196

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
            ++    + H  V+ +    +L I ++++  YAKC  +  AR L DEM  +D ++++ ++
Sbjct: 197 KELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMV 256

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           SGY   G VE A +LF +M       W ++I+G  +++     L+L  +M A  +RP+  
Sbjct: 257 SGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQF 316

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T SS     +  ++L  GK+IHGY ++     N  V +++ID Y+K G L   + VFD  
Sbjct: 317 TFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLM 376

Query: 236 KGR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
             +  +++W  IIS+ A HG   +A+ +F++M+  G++PD +T   +L+AC+HSGLV + 
Sbjct: 377 GDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEG 436

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             ++ +++  +G+ P+ EHYAC++ +L RA         + KMP KP+ ++W ALL    
Sbjct: 437 LRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCR 496

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           + G++E G+ V + + E++P+++  Y++++++++  GRW+  + VR+ M E  + K    
Sbjct: 497 MHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAI 556

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           SWIE    + SF A D      E IYL L++L G M E
Sbjct: 557 SWIEIENKVHSFTASDRLHPLKEVIYLALKQLAGHMEE 594



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 198/411 (48%), Gaps = 13/411 (3%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +KR      S++   SQG  ++   +L   +L+   +R    T+  +LQ C  +  +  G
Sbjct: 12  TKRVPCIVKSLLHLSSQGQLFQAISSL--GLLSRNGIRLPSKTLAYLLQQCANTKSLKLG 69

Query: 62  MEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             VH  +  + +K  + ++ N LI MY+KCG    A  + DEMS ++  S++ ++SGY  
Sbjct: 70  KWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAK 129

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++ A  LF  M    + +WN ++    ++      L   RE++  G+  N  + + +
Sbjct: 130 LGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGL 189

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            ++      L+  K+ HG  +   +  N+ ++++++D YAK   +  A+R+FD    R +
Sbjct: 190 LNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDV 249

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT ++S YA  GD   A  LF+ M     + +PV +T++++  A   L  KA ++F  
Sbjct: 250 LAWTTMVSGYAQWGDVEAARELFDLM----PEKNPVAWTSLIAGYARHDLGHKALELFTK 305

Query: 301 MSGQYGIQPSVEHYA---CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           M     I+P    ++   C    ++      +   ++ +  ++P+  V  +L+   S  G
Sbjct: 306 MMA-LNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCG 364

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +E+G+ V D + +       N II +   +Q GR  EA ++ + M   G+
Sbjct: 365 CLEVGRLVFDLMGDKWDVVLWNTIISS--LAQHGRGQEAIQMFDDMVRLGM 413


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/461 (34%), Positives = 251/461 (54%), Gaps = 33/461 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++ ++W++M+ GY+QGG  ++   LF +M +S VL P   T+V V+ AC     +V G +
Sbjct: 283 KNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVL-PSEFTLVGVINACSDLCAVVEGKQ 341

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+F  +    + L++ +A++ MYAKCGSL  AR                          
Sbjct: 342 MHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADAR-------------------------- 375

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                  F+ +++P +  W ++I+G VQN  +E  L+L  +MQ   V PN +T++S+   
Sbjct: 376 -----KGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRA 430

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  + L  GK++H   +K  +   + + +A+   Y K G L     +F R   R +I W
Sbjct: 431 CSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISW 490

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+IS  + +G  +KA+ LF +ML  GI+PDPVTF  +LSAC+H GLVD+ W+ F  M  
Sbjct: 491 NAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFD 550

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ I P VEHYACMV +LSRA +++EA EF+    V     +W  LL       + ELG 
Sbjct: 551 EFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGV 610

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  + L E+    +  Y++++++Y+  G  +  +RVR  MK  G+ K PG SWIE  G +
Sbjct: 611 YAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKGLV 670

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGY-VLLDEVEE 463
             FV  D    + ++I L LE L  LM +EGY  LLD + E
Sbjct: 671 HVFVVGDNQHPQVDEIRLELELLTKLMIDEGYQPLLDRLPE 711



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 183/370 (49%), Gaps = 48/370 (12%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECK---ALFREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           + +D VSWNS+I  +SQ           +LFR M+ +  + P+  T+  V  A    SD+
Sbjct: 75  NDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDV 134

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           V G + H+  +++    D+++ ++L+ MY K G +  AR L D M +++ VS++ +ISGY
Sbjct: 135 VAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGY 194

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                 +KA+++F++M+R                           E+Q      N   ++
Sbjct: 195 ASSDIADKAVEVFELMRRE-------------------------EEIQ------NEFALT 223

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S  +    +  G+++H  A+KN     + VA A++  YAK G L  A R F+    +
Sbjct: 224 SVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDK 283

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + I W+A+++ YA  GD+ KA+ LFN+M ++G+ P   T   V++AC+    V +   + 
Sbjct: 284 NSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMH 343

Query: 299 N-AMSGQYGIQ-----PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + A    +G+Q       V+ YA   G L+ AR+  E  +       +P   +W +++ G
Sbjct: 344 SFAFKLGFGLQLYVLSAVVDMYA-KCGSLADARKGFECVQ-------QPDVVLWTSIITG 395

Query: 353 ASISGDVELG 362
              +GD E G
Sbjct: 396 YVQNGDYEGG 405



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 197/438 (44%), Gaps = 71/438 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ VSW +MI+GY+     ++   +F  M     ++ +   + SVL A      +  
Sbjct: 179 MPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNE-FALTSVLSALTSDVFVYT 237

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  I++ +   + + NAL+ MYAKCGSLD A    +   DK+ +           
Sbjct: 238 GRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSI----------- 286

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TW+A+++G  Q    +  L L  +M +SGV P+  T+  +
Sbjct: 287 --------------------TWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGV 326

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S    +  GK++H +A K  +   +YV +A++D YAK G L  A++ F+  +   +
Sbjct: 327 INACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDV 386

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD---- 296
           ++WT+II+ Y  +GD    ++L+ +M    + P+ +T  +VL AC+    +D+       
Sbjct: 387 VLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHAR 446

Query: 297 -----------IFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEA 330
                      I +A+S  Y    S++                +  M+  LS+    ++A
Sbjct: 447 IIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKA 506

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVELG----KFVCDHLFEIEPENTGNYIIM 383
            E   KM    +KP    +  LL   S  G V+ G    K + D  F I P    +Y  M
Sbjct: 507 LELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDE-FNIAPM-VEHYACM 564

Query: 384 ANLYSQAGRWDEADRVRE 401
            ++ S+AG+ +EA    E
Sbjct: 565 VDILSRAGKLNEAKEFIE 582


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 254/437 (58%), Gaps = 6/437 (1%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           L P+  T   + Q C        G + H  VI++  +MD+++ N++I  Y+ CG L+ AR
Sbjct: 88  LAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDAR 147

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            + DE S+ D VS++++I G + +G + +A+ LF  M      +WN +ISG  QN + + 
Sbjct: 148 WVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKE 207

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L L REMQ     PN+  + S+ S  S    L  G  +H Y  K     +  ++ A+ID
Sbjct: 208 ALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALID 267

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YAK G +  A + F   + R +  +TA IS  A +G + +A+ LF +M   GI PD V+
Sbjct: 268 MYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVS 327

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           + AVL AC+H+G V+K +  F +MS  +GI+P ++HYACMV +L RA  + EA +FV+ M
Sbjct: 328 YIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASM 387

Query: 338 PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
           P+KP   +WGALL    + G+ E+G+ V   L E +  + G YI+++N+Y+++ + ++A+
Sbjct: 388 PIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAE 447

Query: 398 RVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-- 455
           +VR+ M+   + ++PG S IE +G +  F + D S +K+E+IYL+ E ++  +++ GY  
Sbjct: 448 QVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYRE 507

Query: 456 ----VLLDEVEEESAYV 468
               V+ D  EEE   V
Sbjct: 508 ETRAVVFDVEEEEKEAV 524



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 38/260 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFRE--MLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M++R+ +SWN MI+GY+Q G  +E  ALFRE  ML+     P+   +VSVL AC Q   +
Sbjct: 184 MTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQ---EPNSAILVSVLSACSQLGAL 240

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G  VH ++ +  +++D  +  ALI MYAKCGS+D A         +D  +Y+A ISG 
Sbjct: 241 DHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGL 300

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            ++G  E+A+ LF+ MK  G+S                   D V  +       +A  + 
Sbjct: 301 AMNGCSEEALQLFEQMKGEGISP------------------DGVSYIAVLCACSHAGWVE 342

Query: 179 SIFSLFSHFSNLKGGK-EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             F  F+  S++ G + E+  YA              ++D   + G L  A++       
Sbjct: 343 KGFHYFASMSDVHGIRPELDHYA-------------CMVDLLGRAGLLEEAEKFVASMPI 389

Query: 238 R-SLIIWTAIISAYAAHGDA 256
           +   +IW A++ A   +G+A
Sbjct: 390 KPDNVIWGALLGACRVYGNA 409



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 34/197 (17%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLD---LVREMQASGVRPNAVTISSIFSLFSH 186
           L +    P +  +N  I G  +  R  ++L    L   M    + PN  T + +F   S+
Sbjct: 45  LLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSN 104

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD------------- 233
                 G++ HG  +KN ++ +++V  +II  Y+  G L+ A+ VFD             
Sbjct: 105 CVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSM 164

Query: 234 ------------------RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
                             +   R+ I W  +IS YA +G   +A++LF EM     +P+ 
Sbjct: 165 IDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNS 224

Query: 276 VTFTAVLSACAHSGLVD 292
               +VLSAC+  G +D
Sbjct: 225 AILVSVLSACSQLGALD 241



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           KRD+ ++ + I+G +  G  EE   LF +M    +  PDGV+ ++VL AC  +  +  G 
Sbjct: 287 KRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGI-SPDGVSYIAVLCACSHAGWVEKGF 345

Query: 63  EVHNFVIESHI-----KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
             H F   S +     ++D + C  ++ +  + G L+ A   +  M  K D V + A++ 
Sbjct: 346 --HYFASMSDVHGIRPELDHYAC--MVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLG 401

Query: 117 GYMVHGFVE 125
              V+G  E
Sbjct: 402 ACRVYGNAE 410


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 250/459 (54%), Gaps = 1/459 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW +++ GY++ G  +E   +F  M+ +  L+P+ VT+V+V+ A GQ   + F
Sbjct: 202 MPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAF 261

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V+ +V +  +   + + NALI M+ K G    AR + D M+ KD  S++ +++ Y  
Sbjct: 262 GRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAK 321

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF  M R    +W+ +I+   Q N+ E  + L + M   GV P    + S+
Sbjct: 322 CGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSV 381

Query: 181 FSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +    L  G+ I+  Y +  +    + +  A ID YAK G    A ++F     R+
Sbjct: 382 LSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERN 441

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W ++I A+A HG + + + LF ++    I PD +TF  +LSAC+HSGLV +    F 
Sbjct: 442 VVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFK 501

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI+P  EHYACM+ +L +   + EA E    MP++     WGALL    + G+V
Sbjct: 502 EMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNV 561

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+F  D L ++ P ++G Y++M+ +Y+   +WD+   +R  M+E G+ K PG S IE 
Sbjct: 562 EIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEV 621

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL 458
            G    F+  D S   SE IY  L+ +   ++ EGYV L
Sbjct: 622 DGKFHEFLVADVSHVHSEDIYAALKNIYFHLKWEGYVPL 660



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 16/292 (5%)

Query: 11  SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---IVFGMEVHNF 67
           +M+  + +        ALFR ++    L  D  T+V  ++A     +      G  VH  
Sbjct: 107 TMMRAFLRARLPSRASALFRRVIRES-LPADARTLVFAIKAAASEHEHHSPSGGEGVHCV 165

Query: 68  VIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            ++  H+   + + NAL+  YA   SL +AR L DEM D+D VS++ ++ GY   G  ++
Sbjct: 166 ALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADE 225

Query: 127 AMDLFQVM-----KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           A  +F  M      +P   T  AV+S + Q         + R +   GV  +    +++ 
Sbjct: 226 AWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALI 285

Query: 182 SLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +F  F      +E+    AVK     ++Y  T +++ YAK G L  A R+FD    R+ 
Sbjct: 286 DMFGKFGCAASAREVFDSMAVK-----DVYSWTTMVNAYAKCGDLESAARLFDDMPRRNA 340

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           + W+ +I+AY+      +AV LF  M+  G++P      +VLSACA  G +D
Sbjct: 341 VSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLD 392


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 233/441 (52%), Gaps = 30/441 (6%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +  SWN  I G+       E   L++ +L     +PD  T   + +AC + S I  G E+
Sbjct: 114 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 173

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLD-----------------------------Y 95
              V+      D+++ NA+I +   CG LD                              
Sbjct: 174 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLES 233

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           AR L D M++K  VS++ ++ GY   G ++ A  LF  M    +  WNA+I G V  NR 
Sbjct: 234 ARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRG 293

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
           +  L L  EMQA  + P+ VT+ S  S  S    L  G  IH Y  K+    N+ + TA+
Sbjct: 294 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTAL 353

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           ID YAK G +  A +VF    GR+ + WTAIIS  A HG+A  A++ F+EM++N + PD 
Sbjct: 354 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 413

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           VTF  +LSAC H GLV++    F+ MS ++ + P ++HY+CMV +L RA  + EA E + 
Sbjct: 414 VTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIK 473

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
            MP++  A VWGAL +   I G+V +G+     L +++P ++G Y+++AN+Y +A  W E
Sbjct: 474 SMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKE 533

Query: 396 ADRVREQMKESGLAKIPGRSW 416
           A + R+ M++ G+ K P  SW
Sbjct: 534 AGKARKLMRQRGVEKTPD-SW 553



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 34/257 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V WN+MI GY      +E  ALF EM  +  + PD VT+VS L AC Q   +  
Sbjct: 272 MPDKDVVPWNAMIGGYVHANRGKEALALFNEM-QAMNINPDEVTMVSCLSACSQLGALDV 330

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H+++ +  + +++ +  ALI MYAKCG +  A  +  E+  ++ ++++AIISG  +
Sbjct: 331 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 390

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A+  F                                EM  + V P+ VT   +
Sbjct: 391 HGNAHGAIAYFS-------------------------------EMIDNSVMPDEVTFLGL 419

Query: 181 FSLFSHFSNLKGGKE-IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S   H   ++ G++     + K      +   + ++D   + G L  A+ +       +
Sbjct: 420 LSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA 479

Query: 240 -LIIWTAIISAYAAHGD 255
             ++W A+  A   HG+
Sbjct: 480 DAVVWGALFFACRIHGN 496


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 254/504 (50%), Gaps = 73/504 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----------------NSPVLRPDGV 43
           M  RD+ SWN+MI GY++ G  E+ + LF EM                  N P    + +
Sbjct: 148 MGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQP---REAL 204

Query: 44  TVVSVLQACGQSSDIVF-----------------GMEVHNFVIESHIKMDLWICNALIGM 86
            +  V+Q   +SS   F                 G E+H ++I + + +D  + +AL+ +
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           Y KC                               G +++A  +F  MK   + +W  +I
Sbjct: 265 YGKC-------------------------------GSLDEARGIFDQMKDRDVVSWTTMI 293

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206
               ++ R E    L R++  SGVRPN  T + + +  +  +    GKE+HGY +   YD
Sbjct: 294 HRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYD 353

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
              +  +A++  Y+K G    A+RVF+      L+ WT++I  YA +G   +A+  F  +
Sbjct: 354 PGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELL 413

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           L +G +PD VT+  VLSAC H+GLVDK  + F+++  ++G+  + +HYAC++ +L+R+ R
Sbjct: 414 LQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGR 473

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
             EA   +  MPVKP   +W +LL G  I G++EL K     L+EIEPEN   YI +AN+
Sbjct: 474 FKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANI 533

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y+ AG W E   VR+ M   G+ K PG+SWIE    +  F+  DTS  K+  I+  L  L
Sbjct: 534 YANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGEL 593

Query: 447 LGLMREEGYV-----LLDEVEEES 465
              ++EEGYV     +L +VEEE 
Sbjct: 594 SKKIKEEGYVPDTNFVLHDVEEEQ 617



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           E+L+    RP      +++ AC +   +  G  VH     S+    ++I N L+ MYAKC
Sbjct: 76  ELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKC 135

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GSL  A+ L DEM  +D  S++ +I GY   G +E+A  LF  M +    +WNA ISG V
Sbjct: 136 GSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYV 195

Query: 151 QNNRHEAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            +N+    L+L R MQ       N  T+SS  +  +    L+ GKEIHGY ++   + + 
Sbjct: 196 THNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDE 255

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            V +A++D Y K G L  A+ +FD+ K R ++ WT +I      G   +   LF +++ +
Sbjct: 256 VVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQS 315

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           G++P+  TF  VL+ACA         ++   M    G  P     + +V + S+      
Sbjct: 316 GVRPNEYTFAGVLNACADHAAEHLGKEVHGYMM-HAGYDPGSFAISALVHMYSKCGNTRV 374

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
           A    ++M  +P    W +L+ G + +G  +       H FE+
Sbjct: 375 ARRVFNEMH-QPDLVSWTSLIVGYAQNGQPDEAL----HFFEL 412



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
           L Q  R +  ++L   +  +  RP+A   S++ +       L+ G+ +H +   + +   
Sbjct: 65  LCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPG 121

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           ++++  ++D YAK G L  AQ +FD    R L  W  +I  YA  G   +A  LF+EM  
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM-- 179

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
              Q D  ++ A +S         +A ++F  M 
Sbjct: 180 --PQRDNFSWNAAISGYVTHNQPREALELFRVMQ 211


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 250/469 (53%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+VSW SMIAGY Q    ++  A F+EM    +  PD + + S +  C   + +  
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASAISGCAGINAMRQ 464

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  +  S    D+ I NAL+ +YA+CG +  A +  +E+  KDE+           
Sbjct: 465 GLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI----------- 513

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN ++SG  Q+  HE  L +   M  SGV+ N  T  S 
Sbjct: 514 --------------------TWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ + +K GK+IH   +K  +     V  A+I  Y K G    A+  F     R+ 
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNE 613

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II++ + HG   +A+ LF++M   GI+P+ VTF  VL+AC+H GLV++    F +
Sbjct: 614 VSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKS 673

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+P  +HYAC++ +  RA ++  A +F+ +MP+   A VW  LL    +  ++E
Sbjct: 674 MSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIE 733

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EP ++ +Y++++N Y+   +W   D+VR+ M++ G+ K PGRSWIE  
Sbjct: 734 VGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793

Query: 421 GGLQSFVAKDTSGDKSEQIY----LILERLLGL-MREEGYVLLDEVEEE 464
             + +F   D     +EQIY    +I +R+  +  ++E Y L  + E+E
Sbjct: 794 NVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQE 842



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V++N++I+G++Q G  E    +F EM  S  L PD VT+ S+L AC    D+  
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQK 262

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+++ ++ I  D  +  +L+ +Y KCG                             
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD---------------------------- 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A+ +F    R  +  WN ++    Q N      +L  +MQA+G+RPN  T   I
Sbjct: 295 ---VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCI 351

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    +  G++IH  +VK  ++ ++YV+  +ID Y+K G+L  A+RV +  K + +
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+ Y  H     A++ F EM   GI PD +   + +S CA    + +   I +A
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI-HA 470

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                G    V  +  +V + +R  RI EA     ++  K     W  L+ G + SG
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSG 526



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 164/335 (48%), Gaps = 39/335 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD VSW +M++GY+Q G  EE   L+R+M  + V+ P    + SVL +C ++     
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQ 161

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H    +     ++++ NA+I +Y +CGS   A  +  +M  +D V+++ +ISG+  
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E A+++F+                               EMQ SG+ P+ VTISS+
Sbjct: 222 CGHGEHALEIFE-------------------------------EMQFSGLSPDCVTISSL 250

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L+ G ++H Y  K     +  +  +++D Y K G +  A  +F+     ++
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV 310

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ A+    D +K+  LF +M   GI+P+  T+  +L  C  +  +D    I ++
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HS 369

Query: 301 MSGQYGIQPSVEHYACMV------GVLSRARRISE 329
           +S + G +  +     ++      G L +ARR+ E
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE 404



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 192/438 (43%), Gaps = 71/438 (16%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + ++V WN M+  + Q     +   LF +M  +  +RP+  T   +L+ C  + +I  G 
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQM-QAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H+  +++  + D+++   LI MY+K                               +G
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSK-------------------------------YG 394

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           ++EKA  + +++K   + +W ++I+G VQ+   +  L   +EMQ  G+ P+ + ++S  S
Sbjct: 395 WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  + ++ G +IH     + Y  ++ +  A+++ YA+ G +  A   F+  + +  I 
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF---- 298
           W  ++S +A  G   +A+ +F  M  +G++ +  TF + LSA A+   + +   I     
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 299 -----------NAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------EATE 332
                      NA+   YG   S E        +S    +S               EA +
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELG----KFVCDHLFEIEPENTGNYIIMAN 385
              +M    +KP+   +  +L   S  G VE G    K + D  + I P    +Y  + +
Sbjct: 635 LFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDE-YGIRP-RPDHYACVID 692

Query: 386 LYSQAGRWDEADRVREQM 403
           ++ +AG+ D A +  E+M
Sbjct: 693 IFGRAGQLDRAKKFIEEM 710



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 164/379 (43%), Gaps = 69/379 (18%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H   +   +     + N LI +Y+K G +  AR + +E+S +D VS            
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS------------ 110

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W A++SG  QN   E  L L R+M  +GV P    +SS+ S
Sbjct: 111 -------------------WVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLS 151

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +       G+ IH    K+ +   I+V  A+I  Y + G    A+RVF     R  + 
Sbjct: 152 SCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVT 211

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD----IF 298
           +  +IS +A  G    A+ +F EM  +G+ PD VT +++L+ACA  G + K       +F
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 299 NA-MSGQYGIQPS-------------------------VEHYACMVGVLSRARRISEATE 332
            A +S  Y ++ S                         V  +  M+    +   ++++ E
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFE 331

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYI--IMANL 386
              +M    ++P+   +  +L   + + +++LG+ +  H   ++    +  Y+  ++ ++
Sbjct: 332 LFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI--HSLSVKTGFESDMYVSGVLIDM 389

Query: 387 YSQAGRWDEADRVREQMKE 405
           YS+ G  ++A RV E +KE
Sbjct: 390 YSKYGWLEKARRVLEMLKE 408


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 248/454 (54%), Gaps = 33/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K+ +V+WNSMI+GY   G    C  LF+ M N  V +P   T+ S++  C +S+ ++ 
Sbjct: 268 MPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGV-KPTLTTLSSLIMVCSRSARLLE 326

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH + I + I+ D+++ ++L+ +Y KCG                             
Sbjct: 327 GKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGK---------------------------- 358

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A  +F+++ +  + +WN +ISG V   +    L L  EM+ S V  +A+T +S+
Sbjct: 359 ---VELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSV 415

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L+ GKEIH   ++ + D N  V  A++D YAK G +  A  VF     R L
Sbjct: 416 LTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+AY +HG A  A+ LF EML + ++PD V F A+LSAC H+GLVD+    FN 
Sbjct: 476 VSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQ 535

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDV 359
           M   YGI P VEHY+C++ +L RA R+ EA E + + P ++   ++   L     +  ++
Sbjct: 536 MINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNI 595

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +LG  +   L + +P+++  YI+++N+Y+ A +WDE   VR +MKE GL K PG SWIE 
Sbjct: 596 DLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEI 655

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           +  +  F  +D S    E ++  L  L   M +E
Sbjct: 656 NQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE 689



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 177/362 (48%), Gaps = 35/362 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I  WN ++AGY++   Y E   LF ++L+ P L+PD  T  SV +ACG     V G  +
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +I++ + MD+ + ++L+GMY KC + + A  L +EM +KD   ++ +IS Y   G  
Sbjct: 129 HTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A++ F +M+R G                                 PN+VTI++  S  
Sbjct: 189 KDALEYFGLMRRFGF-------------------------------EPNSVTITTAISSC 217

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L  G EIH   + + +  + ++++A++D Y K G L  A  +F++   ++++ W 
Sbjct: 218 ARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWN 277

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++IS Y   GD    + LF  M N G++P   T ++++  C+ S  + +     +  + +
Sbjct: 278 SMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIR 336

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV--ELG 362
             IQP V   + ++ +  +  ++ E  E + K+  K     W  ++ G    G +   LG
Sbjct: 337 NRIQPDVFVNSSLMDLYFKCGKV-ELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALG 395

Query: 363 KF 364
            F
Sbjct: 396 LF 397



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 205/446 (45%), Gaps = 79/446 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+  WN++I+ Y Q G +++    F  ++      P+ VT+ + + +C +  D+  
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKDALEYFG-LMRRFGFEPNSVTITTAISSCARLLDLNR 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+H  +I S   +D +I +AL+ MY KCG L                           
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHL--------------------------- 258

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               E A+++F+ M +  +  WN++ISG        + + L + M   GV+P   T+SS+
Sbjct: 259 ----EMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSL 314

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + S  + L  GK +HGY ++NR   +++V ++++D Y K G +  A+++F       +
Sbjct: 315 IMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKV 374

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +IS Y A G   +A+ LF+EM  + ++ D +TFT+VL+AC+    ++K  +I N 
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNL 434

Query: 301 MSGQYGIQPSVEHYACMVGVL----SRARRISEATEFVSKMP------------------ 338
           +     I+  +++   ++G L    ++   + EA      +P                  
Sbjct: 435 I-----IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHG 489

Query: 339 ----------------VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
                           VKP    + A+L     +G V+ G +  + +   + I P    +
Sbjct: 490 HAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPR-VEH 548

Query: 380 YIIMANLYSQAGRWDEADRVREQMKE 405
           Y  + +L  +AGR  EA  + +Q  E
Sbjct: 549 YSCLIDLLGRAGRLHEAYEILQQNPE 574



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 138/332 (41%), Gaps = 37/332 (11%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D   ++ +L+AC  S  +  G  +H  V+   ++ D+++C  LI  Y  C   D+A+ + 
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           D M +  E+                              S WN +++G  +N  +   L+
Sbjct: 62  DNMENPCEI------------------------------SLWNGLMAGYTKNYMYVEALE 91

Query: 161 LVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
           L  + +    ++P++ T  S+F           GK IH   +K     +I V ++++  Y
Sbjct: 92  LFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMY 151

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K      A  +F+    + +  W  +IS Y   G+   A+  F  M   G +P+ VT T
Sbjct: 152 GKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTIT 211

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
             +S+CA    +++  +I   +     +  S    A +V +  +   +  A E   +MP 
Sbjct: 212 TAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA-LVDMYGKCGHLEMAIEIFEQMP- 269

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
           K +   W +++ G  + GD+      C  LF+
Sbjct: 270 KKTVVAWNSMISGYGLKGDI----ISCIQLFK 297


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/466 (34%), Positives = 246/466 (52%), Gaps = 37/466 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           + + SWN++I G++Q G   +   L  +M  S   +PD  T+ S+L AC     + +G E
Sbjct: 414 KTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ-QPDWFTISSLLLACAHLKSLQYGKE 472

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H +V+ + ++ D ++  +L+  Y  CG    AR L D                      
Sbjct: 473 IHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDR--------------------- 511

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                     MK   L +WNA+ISG  QN      L L R+  + G++ + + I S+F  
Sbjct: 512 ----------MKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGA 561

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S  S L+ GKE HGY +K     + +V  +IID YAK+G +  +++VFD  K +++  W
Sbjct: 562 CSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASW 621

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            AII A+  HG   +A+ L+  M   G  PD  T+  +L AC H+GLV++    F  M  
Sbjct: 622 NAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQN 681

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
              I+P +EHYAC++ +L+RA R+ +A   V++MP +   ++W +LL      G +E+G+
Sbjct: 682 FNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGE 741

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V   L E+EP+   NY++++NLY+  G+WD   RVR+ MKE GL K  G SWIE  G +
Sbjct: 742 KVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRV 801

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            SFV  D+   KS +I +I  RL   + E GY      +L EV EE
Sbjct: 802 YSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEE 847



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 153/287 (53%), Gaps = 30/287 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + ++VSWNSMI  +S+ GF  +   L  EML    L PD VTVV++L  C    ++  
Sbjct: 207 MPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDI 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +H   ++  +  ++ + NA++ MY+KCG L+ A+    + ++K+ VS++ +IS + +
Sbjct: 267 GMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSL 326

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V +A +L Q M                             ++Q   ++ N VTI ++
Sbjct: 327 EGDVNEAFNLLQEM-----------------------------QIQGEEMKANEVTILNV 357

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    L+  KE+HGY+ ++ + +++ ++ A I  YAK G L+ A++VF     +++
Sbjct: 358 LPACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTV 416

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             W A+I  +A +GD  KA+ L  +M  +G QPD  T +++L ACAH
Sbjct: 417 SSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 225/502 (44%), Gaps = 89/502 (17%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++VSWN+MI+ +S  G   E   L +EM +    ++ + VT+++VL AC     +  
Sbjct: 310 NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRS 369

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H +    H    + + NA I  YAKCG+L+ A  +   + DK              
Sbjct: 370 LKELHGYSFR-HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKT------------- 415

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             +S+WNA+I G  QN      L L+ +M  SG +P+  TISS+
Sbjct: 416 ------------------VSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSL 457

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +H  +L+ GKEIHGY ++N  + + +V T+++  Y   G    A+ +FDR K ++L
Sbjct: 458 LLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNL 517

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           + W A+IS Y+ +G   ++++LF + L+ GIQ   +   +V  AC               
Sbjct: 518 VSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGY 577

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV---GVLS 322
                               A SG + ++  +F+ +  +     +V  +  ++   G+  
Sbjct: 578 VLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDK-----NVASWNAIIVAHGIHG 632

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG-KFVCD--HLFEIEPENTGN 379
             +   E  E + K+   P    +  +L     +G VE G K+  +  +   IEP+   +
Sbjct: 633 HGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPK-LEH 691

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQI 439
           Y  + ++ ++AGR D+A R+  +M E        R W       ++F A +  G+K  + 
Sbjct: 692 YACLIDMLARAGRLDDALRLVNEMPEEA----DNRIWSSLLRSCRTFGALEI-GEKVAKK 746

Query: 440 YLILERLLGLMREEGYVLLDEV 461
            L LE      + E YVLL  +
Sbjct: 747 LLELEP----DKAENYVLLSNL 764



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 149/287 (51%), Gaps = 32/287 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++++ WN++++GY++ G Y +   +F ++++    +PD  T  SV++ACG   D+  
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  VI+  + +D+++ NAL+GMY KCG++D A  + D M + + VS++++I  +  
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF   + DL   M                              +   G+ P+ VT+ +I
Sbjct: 225 NGFSRDSFDLLMEM------------------------------LGEEGLLPDVVTVVTI 254

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +    +  G  IHG AVK      + V  A++  Y+K G+L+ AQ  F +   +++
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSAC 285
           + W  +ISA++  GD ++A +L  EM   G  ++ + VT   VL AC
Sbjct: 315 VSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 144/314 (45%), Gaps = 34/314 (10%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +LQACG   DI  G  +H FV +S H + D  +   LI MYA CGS   +R + D M  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + + ++A++SGY  +G     + +F                           +DLV +  
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVF---------------------------MDLVSD-- 139

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            +  +P+  T  S+        +++ G+ IHG  +K     +++V  A++  Y K G + 
Sbjct: 140 -TDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVD 198

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSAC 285
            A +VFD     +L+ W ++I A++ +G +  +  L  EML   G+ PD VT   +L  C
Sbjct: 199 EAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVC 258

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           A  G VD    I + ++ + G+   V     MV + S+   ++EA     K   K     
Sbjct: 259 AGEGEVDIGMGI-HGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVS- 316

Query: 346 WGALLYGASISGDV 359
           W  ++   S+ GDV
Sbjct: 317 WNTMISAFSLEGDV 330



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 87/138 (63%), Gaps = 1/138 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWN+MI+GYSQ G   E  ALFR+ L S  ++   + +VSV  AC Q S +  
Sbjct: 512 MKDKNLVSWNAMISGYSQNGLPYESLALFRKSL-SEGIQSHEIAIVSVFGACSQLSALRL 570

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E H +V+++    D ++  ++I MYAK G +  +R + D + DK+  S++AII  + +
Sbjct: 571 GKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGI 630

Query: 121 HGFVEKAMDLFQVMKRPG 138
           HG  ++A++L++ MK+ G
Sbjct: 631 HGHGKEAIELYERMKKVG 648


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 272/491 (55%), Gaps = 27/491 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M + +  S+N++I   S+    + C AL  F EM+    + P+  T  SV +ACG++  +
Sbjct: 71  MHRPNCFSYNTLIRALSESN--DPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERL 128

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD------YARALLD---------EM 103
             G +VH   ++  +  D ++ + ++ MY  CG ++      Y R  +D           
Sbjct: 129 REGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRR 188

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            D D V ++ +I GY+  G +E A +LF  M +  + +WN +I+G  Q+   +  +++ R
Sbjct: 189 VDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFR 248

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           EMQ + V PN VT+ S+    S    L+ GK +H YAV+N    +  + +A+ID YAK G
Sbjct: 249 EMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCG 308

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +  A +VF+    R+++ W+ II+  A HG A   +  F +M   G+ P  VT+  +LS
Sbjct: 309 SIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLS 368

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           AC+H+GLV++    F+ M    G++P +EHY CMV +L RA  + E+ E +  MP+KP  
Sbjct: 369 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 428

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            +W ALL    + G+VE+GK V +HL E+ P ++G+Y+ ++N+Y+  G W+   +VR  M
Sbjct: 429 VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMM 488

Query: 404 KESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER------LLGLMREEGYVL 457
           KE  + K PG SWIE  G +  F+ +D S  KS++I+ +L+       L+G       VL
Sbjct: 489 KEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVL 548

Query: 458 --LDEVEEESA 466
             +DE ++ES+
Sbjct: 549 TNMDEEDKESS 559


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 247/453 (54%), Gaps = 32/453 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S+   V +N++IAGYS    + +   LFR+M    V   + VT++ ++  C     + FG
Sbjct: 120 SRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGV-SVNAVTMLGLIPVCAGPIHLGFG 178

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +H   +   +  DL + N L+ MY +CGS+D+AR L D                    
Sbjct: 179 TSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFD-------------------- 218

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G  EK           GL TWNA+ISG  QN     VLDL R+M+ +G+ P+ VT+  + 
Sbjct: 219 GMPEK-----------GLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +H      G+E+      + +  N ++  A+I+ YA+ G L  A+ +FD    +++I
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVI 327

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WTAII+ Y  HG    AV LF+EM+++   PD   F +VLSAC+H+GL +K    F AM
Sbjct: 328 SWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAM 387

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              YG+QP  EHY+C+V +L RA R+ EA + +  M V+P   VWGALL    I  +VEL
Sbjct: 388 ERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVEL 447

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +   + + E EP N G Y++++N++S+AG  +   RVR  M+E  L K PG S++E  G
Sbjct: 448 AELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQG 507

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
            +  F+A D +  ++++IY +L+ L  +++  G
Sbjct: 508 RIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRG 540



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 169/358 (47%), Gaps = 40/358 (11%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           SWN+ +   ++   ++E   L+ +ML S    P+  T     ++C   S  + G ++H  
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGD-SPNAFTFPFAFKSCASLSLPLAGSQLHGH 81

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGYMVHGFVE 125
           VI++  + + ++  +LI MY KC ++  AR + DE   S    V Y+A+I+GY ++    
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A+ LF+ M++ G+S                                NAVT+  +  + +
Sbjct: 142 DAVLLFRQMRKEGVSV-------------------------------NAVTMLGLIPVCA 170

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
              +L  G  +H  +V+   D ++ V   ++  Y + G +  A+++FD    + LI W A
Sbjct: 171 GPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNA 230

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN--AMSG 303
           +IS YA +G A   + L+ +M   GI PDPVT   VLS+CAH G      ++     +SG
Sbjct: 231 MISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSG 290

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
            +G  P +++   ++ + +R   + +A      M  K +   W A++ G  + G  EL
Sbjct: 291 -FGFNPFLKN--ALINMYARCGNLVKARAIFDGMTEK-NVISWTAIIAGYGMHGQGEL 344



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++ +++WN+MI+GY+Q G       L+R+M  + ++ PD VT+V VL +C        
Sbjct: 220 MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV-PDPVTLVGVLSSCAHLGAHAA 278

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV   +  S    + ++ NALI MYA+CG+L  ARA+ D M++K+ +S++AII+GY +
Sbjct: 279 GREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGM 338

Query: 121 HGFVEKAMDLFQVM----KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAV 175
           HG  E A+ LF  M    + P  + + +V+S        E  L     M+   G++P   
Sbjct: 339 HGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPE 398

Query: 176 TISSIFSLFSHFSNLKGGKEIHG 198
             S +  L      L+  +++ G
Sbjct: 399 HYSCVVDLLGRAGRLEEARKLIG 421



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
           ++WNA +  L +    +  L+L  +M ASG  PNA T    F   +  S    G ++HG+
Sbjct: 22  ASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGH 81

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR-FKGRSL-IIWTAIISAYAAHGDAS 257
            +K   +   +V T++I  Y K   +  A++VFD     R+L + + A+I+ Y+ +   S
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-FNAMSGQYGIQPSVEHYAC 316
            AV LF +M   G+  + VT   ++  CA  G +   +    +A S ++G+   +    C
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVRFGLDGDLSVGNC 199

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           ++ +  R   +  A +    MP K     W A++ G + +G
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEK-GLITWNAMISGYAQNG 239



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 13/139 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++++++SW ++IAGY   G  E    LF EM++S  L PDG   VSVL AC  +     
Sbjct: 321 MTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL-PDGAAFVSVLSACSHA----- 374

Query: 61  GMEVHNFVIESHIKMDLWI------CNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSA 113
           G+        + ++ D  +       + ++ +  + G L+ AR L+  MS + D   + A
Sbjct: 375 GLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGA 434

Query: 114 IISGYMVHGFVEKAMDLFQ 132
           ++    +H  VE A   F+
Sbjct: 435 LLGACKIHRNVELAELAFE 453


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 244/445 (54%), Gaps = 3/445 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K  +  +N  I  +S  G    C  L+ +M  S    P+  +   +  AC    ++  
Sbjct: 42  IPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMC-SQGCSPNQYSFTFLFPACASLFNVYP 100

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+   +S    D++   AL+ MYAK G L  AR L DEM  +D  +++++I+GY  
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISS 179
            G +E A++LF  M    + +W A+ISG  QN ++   L++   ++   G +PN V+I+S
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGR 238
           +    S    L  GK I  YA  N + +N YV+ A+++ +A+ G +  AQ+VFD     R
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKR 280

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +L  W  +I   A HG    A+ L+++ML   ++PD VTF  +L AC H G+V +   +F
Sbjct: 281 NLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLF 340

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M  ++ + P +EHY C+V +L RA  + EA   +  MP+ P + +WG LL   S  G+
Sbjct: 341 ESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGN 400

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VELG+   + LF++EP N GNY+I++N+Y+ AG W    R+R+ MK   + K  G S+IE
Sbjct: 401 VELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIE 460

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLIL 443
              G+  F+ +D    +  Q +L+L
Sbjct: 461 VGDGIHEFIVEDRITSRCVQPFLLL 485



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 27/212 (12%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K+IH Y+++N  D   +    +I+   +   L  A  +FD+    S+ ++   I  +++ 
Sbjct: 5   KQIHAYSLRNGLDHTKF----LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-------- 305
           G   +   L+ +M + G  P+  +FT +  ACA          +FN   GQ         
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACA---------SLFNVYPGQMLHSHFCKS 111

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G    +     ++ + ++   +  A +   +MPV+     W +L+ G + SG +E     
Sbjct: 112 GFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGHMEAAL-- 168

Query: 366 CDHLFEIEP-ENTGNYIIMANLYSQAGRWDEA 396
              LF   P  N  ++  + + Y+Q G++ +A
Sbjct: 169 --ELFNKMPVRNVISWTALISGYAQNGKYAKA 198


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 251/455 (55%), Gaps = 1/455 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RDI  ++S++   S     E    + R ML++  L PD   + SV     +      G 
Sbjct: 42  RRDIYIYSSLLTAISHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGR 101

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H   + S    D  + ++L+ MY KCGS D  R + D MS K+ V ++A++SGY  +G
Sbjct: 102 QLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNG 161

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
             E+A+ LF+ M    L  W A+ISGLV        ++L  EM+  GVR  +A  +S + 
Sbjct: 162 RSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVI 221

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +  +    G+++HG A++  +  N+ V  A+ID Y+K   +  A+ VF+    R +I
Sbjct: 222 GASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVI 281

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT ++   A HG A +A++L++ M+  G +P+ VTF  ++ AC+H+GLV K   +F +M
Sbjct: 282 SWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESM 341

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI P ++HY C + +LSR+  + EA E ++ MP +P    WGALL   +   D E+
Sbjct: 342 KNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEM 401

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
              + D L E+ P+++  YI+++N+Y+  G+WD   +VR+ M    + K PG SWIE   
Sbjct: 402 CIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGR 461

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + F A +   D  E+I + LE ++  MR+ GYV
Sbjct: 462 EFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYV 496



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 34/220 (15%)

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           AL+  YAK   L  A  L DE   +D   YS++++        E A+ + + M       
Sbjct: 19  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCM------- 71

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                                  + A  + P+   ISS+ S+F+   + + G+++H + V
Sbjct: 72  -----------------------LSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFV 108

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            + Y+ +  V ++++D Y K G     ++VFD    ++ ++WTA++S YA++G + +A+ 
Sbjct: 109 ASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQ 168

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           LF  M    +      +TA++S   ++G    A ++F  M
Sbjct: 169 LFRSMPGRNL----FAWTALISGLVNTGESVGAVELFVEM 204



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 129/307 (42%), Gaps = 38/307 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++ +W ++I+G    G       LF EM    V   D   +  V+ A    +  V 
Sbjct: 173 MPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVL 232

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   +      ++ + NALI MY+KC  +  AR + + ++ +D +S++ ++ G   
Sbjct: 233 GRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQ 292

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG  E+A+ L+                                 M  +G +PN VT   +
Sbjct: 293 HGRAEEALALYD-------------------------------RMVLAGAKPNEVTFVGL 321

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
               SH   ++ G+++   ++KN Y     +   T  +D  +++G L  A+ +       
Sbjct: 322 IYACSHAGLVQKGRQLFE-SMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYE 380

Query: 239 S-LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWD 296
                W A++SA   + DA   + + +++L   ++P D  T+  + +  A +G  D    
Sbjct: 381 PDEATWGALLSACTKYKDAEMCIRISDKLLE--LRPKDSSTYILLSNVYAVNGKWDSVAK 438

Query: 297 IFNAMSG 303
           +   M G
Sbjct: 439 VRKCMIG 445


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 250/469 (53%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+VSW SMIAGY Q    ++  A F+EM    +  PD + + S +  C   + +  
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASAISGCAGINAMRQ 464

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  +  S    D+ I NAL+ +YA+CG +  A +  +E+  KDE+           
Sbjct: 465 GLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI----------- 513

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN ++SG  Q+  HE  L +   M  SGV+ N  T  S 
Sbjct: 514 --------------------TWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ + +K GK+IH   +K  +     V  A+I  Y K G    A+  F     R+ 
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNE 613

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II++ + HG   +A+ LF++M   GI+P+ VTF  VL+AC+H GLV++    F +
Sbjct: 614 VSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKS 673

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+P  +HYAC++ +  RA ++  A +F+ +MP+   A VW  LL    +  ++E
Sbjct: 674 MSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIE 733

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EP ++ +Y++++N Y+   +W   D+VR+ M++ G+ K PGRSWIE  
Sbjct: 734 VGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793

Query: 421 GGLQSFVAKDTSGDKSEQIY----LILERLLGL-MREEGYVLLDEVEEE 464
             + +F   D     +EQIY    +I +R+  +  ++E Y L  + E+E
Sbjct: 794 NVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQE 842



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V++N++I+G++Q G  E    +F EM  S  L PD VT+ S+L AC    D+  
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQK 262

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+++ ++ I  D  +  +L+ +Y KCG                             
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD---------------------------- 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A+ +F    R  +  WN ++    Q N      +L  +MQA+G+RPN  T   I
Sbjct: 295 ---VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCI 351

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    +  G++IH  +VK  ++ ++YV+  +ID Y+K G+L  A+RV +  K + +
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+ Y  H     A++ F EM   GI PD +   + +S CA    + +   I +A
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI-HA 470

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                G    V  +  +V + +R  RI EA     ++  K     W  L+ G + SG
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSG 526



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 164/335 (48%), Gaps = 39/335 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD VSW +M++GY+Q G  EE   L+R+M  + V+ P    + SVL +C ++     
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQ 161

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H    +     ++++ NA+I +Y +CGS   A  +  +M  +D V+++ +ISG+  
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E A+++F+                               EMQ SG+ P+ VTISS+
Sbjct: 222 CGHGEHALEIFE-------------------------------EMQFSGLSPDCVTISSL 250

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L+ G ++H Y  K     +  +  +++D Y K G +  A  +F+     ++
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV 310

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ A+    D +K+  LF +M   GI+P+  T+  +L  C  +  +D    I ++
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HS 369

Query: 301 MSGQYGIQPSVEHYACMV------GVLSRARRISE 329
           +S + G +  +     ++      G L +ARR+ E
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE 404



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 192/438 (43%), Gaps = 71/438 (16%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + ++V WN M+  + Q     +   LF +M  +  +RP+  T   +L+ C  + +I  G 
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQM-QAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H+  +++  + D+++   LI MY+K                               +G
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSK-------------------------------YG 394

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           ++EKA  + +++K   + +W ++I+G VQ+   +  L   +EMQ  G+ P+ + ++S  S
Sbjct: 395 WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  + ++ G +IH     + Y  ++ +  A+++ YA+ G +  A   F+  + +  I 
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF---- 298
           W  ++S +A  G   +A+ +F  M  +G++ +  TF + LSA A+   + +   I     
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 299 -----------NAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------EATE 332
                      NA+   YG   S E        +S    +S               EA +
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELG----KFVCDHLFEIEPENTGNYIIMAN 385
              +M    +KP+   +  +L   S  G VE G    K + D  + I P    +Y  + +
Sbjct: 635 LFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDE-YGIRP-RPDHYACVID 692

Query: 386 LYSQAGRWDEADRVREQM 403
           ++ +AG+ D A +  E+M
Sbjct: 693 IFGRAGQLDRAKKFIEEM 710



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 164/379 (43%), Gaps = 69/379 (18%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H   +   +     + N LI +Y+K G +  AR + +E+S +D VS            
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS------------ 110

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W A++SG  QN   E  L L R+M  +GV P    +SS+ S
Sbjct: 111 -------------------WVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLS 151

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +       G+ IH    K+ +   I+V  A+I  Y + G    A+RVF     R  + 
Sbjct: 152 SCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVT 211

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD----IF 298
           +  +IS +A  G    A+ +F EM  +G+ PD VT +++L+ACA  G + K       +F
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 299 NA-MSGQYGIQPS-------------------------VEHYACMVGVLSRARRISEATE 332
            A +S  Y ++ S                         V  +  M+    +   ++++ E
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFE 331

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYI--IMANL 386
              +M    ++P+   +  +L   + + +++LG+ +  H   ++    +  Y+  ++ ++
Sbjct: 332 LFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI--HSLSVKTGFESDMYVSGVLIDM 389

Query: 387 YSQAGRWDEADRVREQMKE 405
           YS+ G  ++A RV E +KE
Sbjct: 390 YSKYGWLEKARRVLEMLKE 408


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/452 (36%), Positives = 259/452 (57%), Gaps = 32/452 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+    +MI+GY   G   +    FR ++   ++ P+ +T+ SVL AC   + +  G E+
Sbjct: 412 DVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV-PNSLTMASVLPACAALAALKLGKEL 470

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++  ++  + + +A+  MYAKCG LD A      MS+ D +               
Sbjct: 471 HCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSI--------------- 515

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            WN++IS   QN + E  +DL R+M  SG + ++V++SS  S  
Sbjct: 516 ----------------CWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSA 559

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           ++   L  GKE+HGY ++N +  + +VA+A+ID Y+K G L  A+ VF+   G++ + W 
Sbjct: 560 ANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWN 619

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II+AY  HG A + + LF+EML  G+ PD VTF  ++SAC H+GLV +    F+ M+ +
Sbjct: 620 SIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTRE 679

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI   +EHYACMV +  RA R+ EA + +  MP  P A VWG LL    + G+VEL K 
Sbjct: 680 YGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKL 739

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              HL E++P+N+G Y++++N+++ AG W    +VR  MKE G+ KIPG SWI+ +GG  
Sbjct: 740 ASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTH 799

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            F A + +  +S +IYLIL  LL  +R++GYV
Sbjct: 800 MFSAAEGNHPESVEIYLILNSLLLELRKQGYV 831



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 32/281 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD + WN M+ GY + G +      F  M  S  +  + VT   +L  C        
Sbjct: 206 LPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSM-VNSVTYTCILSICATRGKFCL 264

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  VI S  + D  + N L+ MY+KCG+L  AR L + M   D V           
Sbjct: 265 GTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTV----------- 313

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +I+G VQN   +    L   M ++GV+P++VT +S 
Sbjct: 314 --------------------TWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASF 353

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                   +L+  KE+H Y V++R   ++Y+ +A+ID Y K G +  A+++F +     +
Sbjct: 354 LPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDV 413

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            + TA+IS Y  HG    A++ F  ++  G+ P+ +T  +V
Sbjct: 414 AVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASV 454



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 32/285 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           + + WN MI G    G+++     + +ML S V  PD  T   V++ACG  +++   M V
Sbjct: 109 NALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV-SPDKYTFPYVIKACGGLNNVPLCMVV 167

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           HN        +DL++ +ALI +YA  G +  AR + DE+  +D + ++ ++ GY+  G  
Sbjct: 168 HNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDF 227

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             AM  F  M+    ++++ V                           N+VT + I S+ 
Sbjct: 228 NNAMGTFCGMR----TSYSMV---------------------------NSVTYTCILSIC 256

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +       G ++HG  + + ++ +  VA  ++  Y+K G L  A+++F+       + W 
Sbjct: 257 ATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWN 316

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            +I+ Y  +G   +A  LFN M++ G++PD VTF + L +   SG
Sbjct: 317 GLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 361



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 120/266 (45%), Gaps = 44/266 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+ D + WNSMI+ +SQ G  E    LFR+M  S   + D V++ S L +      + +
Sbjct: 509 MSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGA-KFDSVSLSSALSSAANLPALYY 567

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +VI +    D ++ +ALI MY+KCG L  AR + + M+ K+EVS+++II+ Y  
Sbjct: 568 GKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGN 627

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   + +DLF                                EM  +GV P+ VT   I
Sbjct: 628 HGCARECLDLFH-------------------------------EMLRAGVHPDHVTFLVI 656

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR---YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S   H   +  G+ IH +    R       +     ++D Y + G LH A   FD  K 
Sbjct: 657 ISACGHAGLV--GEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEA---FDAIKS 711

Query: 238 RSLI----IWTAIISAYAAHGDASKA 259
                   +W  ++ A   HG+   A
Sbjct: 712 MPFTPDAGVWGTLLGACRLHGNVELA 737



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 5/259 (1%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           + + ++  MSD   +S S ++  Y++ G +    +LF  ++      WN +I GL     
Sbjct: 67  HTQIIVGGMSDVCALS-SRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGW 125

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
            +  L    +M  S V P+  T   +       +N+     +H  A    +  +++V +A
Sbjct: 126 FDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSA 185

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I  YA  G++  A+RVFD    R  I+W  ++  Y   GD + A+  F  M  +    +
Sbjct: 186 LIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVN 245

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQ-YGIQPSVEHYACMVGVLSRARRISEATEF 333
            VT+T +LS CA  G       +   + G  +   P V +   +V + S+   + +A + 
Sbjct: 246 SVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVAN--TLVAMYSKCGNLFDARKL 303

Query: 334 VSKMPVKPSAKVWGALLYG 352
            + MP +     W  L+ G
Sbjct: 304 FNTMP-QTDTVTWNGLIAG 321


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 262/454 (57%), Gaps = 33/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN--SPVLRPDGVTVVSVLQACGQSSDI 58
           + +RD+VSWNS+I+G++  G  E     F +M++  +  + P+ VTV+++L++C +   +
Sbjct: 228 IEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCV 287

Query: 59  VFGMEVHNFVIESH----IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
                VH ++   H    +  D+ +  AL+ M+A+CG+L  AR + D +  K+ V +SA+
Sbjct: 288 ETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAM 347

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I+GY      E+A+ LF+ M              L++ N           M    V+PNA
Sbjct: 348 IAGYEQGSCPEEALRLFRQM--------------LMEGN-----------MVGVEVKPNA 382

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT+ S+ +  S     +    IH YAV    D++  +A+A+ID  AK G +   ++VF  
Sbjct: 383 VTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSE 442

Query: 235 F--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
                R+++ W+++I A   HG+  +A+ LF+EM   G +P+ +T+ +VLSAC+H+GLV+
Sbjct: 443 MDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVE 502

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +    FN+M   YG+ P+ +HYAC+V +L RA  + EA   +  MP+K    +WG+LL  
Sbjct: 503 QGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAA 562

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             + G+ +LG+ V   +  ++  + G+++++AN+Y  AGRWD+  R+R +++ SGL KIP
Sbjct: 563 CHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIP 622

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           G+S+IE    + SF+A+D S  +SE IY  L+ L
Sbjct: 623 GQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGL 656



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 198/455 (43%), Gaps = 90/455 (19%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML------NSPVLRPDGVTVVSVLQACG---QS 55
           D+VSW ++I+ YS  G  +E    F  M        S     D V++ +++ AC     S
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSA 113
           + +  G  VH  V++    +   + N+++ MY+ C  +  A  + +   +  +D VS+++
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +ISG+ ++G  E+A+  F+ M   G                             S V PN
Sbjct: 239 LISGFTLNGEAERALRTFEDMVSEG----------------------------TSAVEPN 270

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-----RNIYVATAIIDTYAKTGFLHGA 228
            VT+ ++    +    ++    +H Y + +R+      +++ V TA++D +A+ G L  A
Sbjct: 271 RVTVIALLKSCAELGCVETSSWVHEY-ISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG------IQPDPVTFTAVL 282
           + +FD  +G++++ W+A+I+ Y       +A+ LF +ML  G      ++P+ VT  +V+
Sbjct: 330 REIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVI 389

Query: 283 SACAHSGL---------------VDKAWDIFNAMSGQYGIQPSVEH-------------- 313
           +AC+  G                +D+   I +A+         +EH              
Sbjct: 390 AACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRT 449

Query: 314 ---YACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCD 367
              ++ M+G          A E  S+M     +P+   + ++L   S +G VE GK   +
Sbjct: 450 VVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFN 509

Query: 368 HL---FEIEPENTGNYIIMANLYSQAGRWDEADRV 399
            +   + + P    +Y  + +L  +AG  DEA  V
Sbjct: 510 SMEKDYGMSPTGK-HYACLVDLLGRAGHLDEAHNV 543



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 143/307 (46%), Gaps = 42/307 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D   WNS+IA  +      +    F   + +  +  +  T  ++L+AC     ++ 
Sbjct: 13  ISHKDTFHWNSLIAKNATQN--PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIISGY 118
            ++VH ++    +  D +   AL+  Y KCG   YA  + DEM +   D VS++A+IS Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G V++A   F  M+   +  W+                         G     V + 
Sbjct: 131 SSNGCVDEAFKAFGRMR--WMRGWD-------------------------GSECCGVDVV 163

Query: 179 SIFSLFSHFS------NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           S+ +L S  +       L+ G  +HG  VK  +  + ++  +++  Y+    + GA RVF
Sbjct: 164 SLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVF 223

Query: 233 D--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG---IQPDPVTFTAVLSACAH 287
           +    + R ++ W ++IS +  +G+A +A+  F +M++ G   ++P+ VT  A+L +CA 
Sbjct: 224 NGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAE 283

Query: 288 SGLVDKA 294
            G V+ +
Sbjct: 284 LGCVETS 290



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 15/232 (6%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN++I+     N   A+    R MQA  V  N  T  ++    +    L    ++H Y  
Sbjct: 21  WNSLIAKNATQNPQTALTFFTR-MQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLT 79

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS--LIIWTAIISAYAAHGDASKA 259
           +     + + A A++D Y K G  + A +VFD     S  ++ WTA+ISAY+++G   +A
Sbjct: 80  RLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEA 139

Query: 260 VSLFNEML-------NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG---QYGIQP 309
              F  M        +     D V+  A++SACA  G         +A+ G   +YG   
Sbjct: 140 FKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVHGLVVKYGFGV 198

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV-WGALLYGASISGDVE 360
           S      MV + S  + +  A    + +P++    V W +L+ G +++G+ E
Sbjct: 199 STHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 250/465 (53%), Gaps = 37/465 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ +WN++I GY++          +R+M+ S V  PD  T   +L+A  +S ++  G  +
Sbjct: 82  NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCV-EPDTHTYPFLLKAISKSLNVREGEAI 140

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+  I +  +  +++ N+L+ +YA CG                                 
Sbjct: 141 HSVTIRNGFESLVFVQNSLLHIYAACGD-------------------------------T 169

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A  +F++MK   L  WN++I+G   N R    L L REM   GV P+  T+ S+ S  
Sbjct: 170 ESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSAS 229

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L+ G+ +H Y +K    +N +V  +++D YAK G +  AQRVF     R+ + WT
Sbjct: 230 AELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWT 289

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I   A +G   +A+ LF EM   G+ P  +TF  VL AC+H G++D+ ++ F  M  +
Sbjct: 290 SLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEE 349

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            GI P +EHY CMV +LSRA  + +A E++  MPV+P+A +W  LL   +I G + LG+ 
Sbjct: 350 CGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEI 409

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              HL  +EP+++G+Y++++NLY+   RW +   +R  M + G+ K PG S +E    + 
Sbjct: 410 ARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVY 469

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            F   D S  +S+ +Y +LE++  L++ EGYV     +L ++EEE
Sbjct: 470 EFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEE 514



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+V+WNSMI G++  G   E   LFREM    V  PDG TVVS+L A  +   +  
Sbjct: 179 MKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGV-EPDGFTVVSLLSASAELGALEL 237

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++++  +  +  + N+L+ +YAKCG++  A+ +  EMS+++ VS++++I G  V
Sbjct: 238 GRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAV 297

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           +GF E+A++LF+ M+  GL        G++    H  +LD
Sbjct: 298 NGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLD 337



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 137/283 (48%), Gaps = 9/283 (3%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A ++F V+  P + TWN +I G  +++         R+M  S V P+  T   +    S 
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             N++ G+ IH   ++N ++  ++V  +++  YA  G    A +VF+  K R L+ W ++
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ +A +G  ++A++LF EM   G++PD  T  ++LSA A  G ++    + +    + G
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRV-HVYLLKVG 249

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           +  +      ++ + ++   I EA    S+M  + +A  W +L+ G +++G    G+   
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER-NAVSWTSLIVGLAVNG---FGEEAL 305

Query: 367 DHLFEIEPEN--TGNYIIMANLY--SQAGRWDEADRVREQMKE 405
           +   E+E +         +  LY  S  G  DE      +MKE
Sbjct: 306 ELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKE 348


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/418 (34%), Positives = 242/418 (57%), Gaps = 1/418 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNS++ GY Q   + E   +F  M  + V + D VT+V V+ AC    +   
Sbjct: 138 MPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGV-KGDAVTMVKVVLACTSLGEWGV 196

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              + +++ E+++++D+++ N LI MY + G +  AR + D+M  ++ VS++A+I GY  
Sbjct: 197 ADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGK 256

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A +LF  M +  + +W  +I+   Q  +    L L +EM  S V+P+ +T++S+
Sbjct: 257 AGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASV 316

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +H  +L  G+  H Y  K     +IYV  A+ID Y K G +  A  VF   + +  
Sbjct: 317 LSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDS 376

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT+IIS  A +G A  A+  F+ ML   +QP    F  +L ACAH+GLVDK  + F +
Sbjct: 377 VSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFES 436

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++P ++HY C+V +LSR+  +  A EF+ +MPV P   +W  LL  + + G++ 
Sbjct: 437 MEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIP 496

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           L +     L E++P N+GNY++ +N Y+ + RW++A ++RE M++S + K  G S IE
Sbjct: 497 LAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIE 554



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 192/430 (44%), Gaps = 68/430 (15%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN MI G+S      E   ++  M    +L  + +T + + +AC +  D+  G  +H  V
Sbjct: 45  WNIMIRGWSVSDQPNEAIRMYNLMYRQGLL-GNNLTYLFLFKACARVPDVSCGSTIHARV 103

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++   +  L++ NALI MY  CG L  A+ + DEM ++D VS+++++ GY          
Sbjct: 104 LKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYG--------- 154

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                                 Q  R   VL +   M+ +GV+ +AVT+  +    +   
Sbjct: 155 ----------------------QCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-------- 240
                  +  Y  +N  + ++Y+   +ID Y + G +H A+ VFD+ + R+L        
Sbjct: 193 EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIM 252

Query: 241 -----------------------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
                                  I WT +I++Y+  G  ++A+ LF EM+ + ++PD +T
Sbjct: 253 GYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEIT 312

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
             +VLSACAH+G +D      + +  +Y ++  +     ++ +  +   + +A E   +M
Sbjct: 313 VASVLSACAHTGSLDVGEAAHDYIQ-KYDVKADIYVGNALIDMYCKCGVVEKALEVFKEM 371

Query: 338 PVKPSAKVWGALLYGASISG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
             K S   W +++ G +++G  D  L  F    L E+   + G ++ +    + AG  D+
Sbjct: 372 RKKDSVS-WTSIISGLAVNGFADSALDYF-SRMLREVVQPSHGAFVGILLACAHAGLVDK 429

Query: 396 ADRVREQMKE 405
                E M++
Sbjct: 430 GLEYFESMEK 439



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
           Y+ I S  +    + KA +LFQ + RP L  WN +I G   +++    + +   M   G+
Sbjct: 14  YNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGL 73

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             N +T   +F   +   ++  G  IH   +K  ++ ++YV+ A+I+ Y   G L  AQ+
Sbjct: 74  LGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQK 133

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD    R L+ W +++  Y       + + +F  M   G++ D VT   V+ AC   G 
Sbjct: 134 VFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG- 192

Query: 291 VDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
               W + +AM     +  ++  V     ++ +  R   +  A     +M  +     W 
Sbjct: 193 ---EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVS-WN 248

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           A++ G   +G++   + + D + +    +  ++  M   YSQAG++ EA R+ ++M ES
Sbjct: 249 AMIMGYGKAGNLVAARELFDAMSQ---RDVISWTNMITSYSQAGQFTEALRLFKEMMES 304


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 257/475 (54%), Gaps = 43/475 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVL-----QACGQS 55
           M   D++SWNSMI+  +Q    EE   LF ++L+   L+PD  T+ S+      +ACG  
Sbjct: 347 MKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG-LKPDHFTLASITLATAAKACGCL 405

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +  G ++H   I++    DL + + ++ MY KCG +  A  + + +S  D+V+     
Sbjct: 406 VLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA----- 460

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                                     W ++ISG V N   +  L +   M+ S V P+  
Sbjct: 461 --------------------------WTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEY 494

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T +++    S  + L+ G+++H   +K     + +V T+++D YAK G +  A R+F + 
Sbjct: 495 TFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM 554

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R++ +W A++   A HG+A +AV+LF  M ++GI+PD V+F  +LSAC+H+GL  +A+
Sbjct: 555 NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAY 614

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           +  ++M   YGI+P +EHY+C+V  L RA  + EA + +  MP K SA +  ALL    I
Sbjct: 615 EYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRI 674

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            GDVE GK V   LF +EP ++  Y++++N+Y+ A RWD+    R+ MK   + K PG S
Sbjct: 675 QGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFS 734

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           WI+    L  FV  D S  +++ IY  +E ++  +RE+GY      VLLD  +EE
Sbjct: 735 WIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE 789



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 147/291 (50%), Gaps = 39/291 (13%)

Query: 3   KRDIVSWNSMIAGY-----SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD 57
           +RD+V+WN+++  Y     S  G  +E   LFR +L + +     +T+  VL+ C  S  
Sbjct: 140 ERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGC 198

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +     VH + I+  ++ D+++  AL+ +Y+KCG +  AR L D M ++D V        
Sbjct: 199 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVV-------- 250

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                   WN ++ G VQ    +    L  E   SG+RP+  ++
Sbjct: 251 -----------------------LWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSV 287

Query: 178 SSIFS--LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
             I +  L++   +L+ GK++HG AVK+  D ++ VA ++++ Y+K G  + A+ VF+  
Sbjct: 288 QLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDM 347

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           K   LI W ++IS+ A      ++V+LF ++L+ G++PD  T  ++  A A
Sbjct: 348 KHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATA 398



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 36/250 (14%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L+    + +++ G   H  ++ S    D ++ N L+ MY+KCGSL  AR + D   ++D
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI---SGLVQNNRHEAV--LDLV 162
                                          L TWNA++   +  V +N   A   L L 
Sbjct: 143 -------------------------------LVTWNAILGAYAASVDSNDGNAQEGLHLF 171

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
           R ++AS      +T++ +  L  +   L   + +HGYA+K   + +++V+ A+++ Y+K 
Sbjct: 172 RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKC 231

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G +  A+ +FD  + R +++W  ++  Y   G   +A  LF+E   +G++PD  +   +L
Sbjct: 232 GRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLIL 291

Query: 283 SACAHSGLVD 292
           + C  +G  D
Sbjct: 292 NGCLWAGTDD 301


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 256/463 (55%), Gaps = 32/463 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+VSWN+M+  Y + G   E   +FR+M+    + P+ VTV  VL AC    D+V 
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVL 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  +   + ++MD  + +AL+GMY KCG +  AR + D + DKD V+          
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVA---------- 322

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  QN      + L   M+ +G+RP+ +T++ +
Sbjct: 323 ---------------------WNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGV 361

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+ G E+ GYA +     N+YV TA++D YAK G L  A  VF +   +++
Sbjct: 362 LSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNV 421

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W A+I   A +G   +A+  F  M N  G++PD +TF  VLSAC H+GLV      FN
Sbjct: 422 ASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFN 481

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ ++ I P +EHY+CMV +L+R+  + EA +F+ K+P K  A + GALL       +V
Sbjct: 482 SLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNV 541

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+ V + + ++EP N+ NY++ + +Y+ + R D++ ++R  M+E G+ K PG SW+E 
Sbjct: 542 EIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEV 601

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
           SG +  F A D     ++ +Y +L+ L+  MR EGYV   +VE
Sbjct: 602 SGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYVPNLDVE 644



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   ++N  I     +  H + L L   M  S +RP++ T+  +    + +      +  
Sbjct: 116 PTAFSYNVAIRFFASSRPHTS-LRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H    K   + + +   ++I  Y+       A++VFD    R ++ W A++ AY   G  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 257 SKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPSVEHY 314
            +   +F +M+  G + P+ VT   VL+AC   G LV   W    + S +  +   V   
Sbjct: 235 GEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG-- 292

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           + ++G+  +   I+EA      + +      W A++ G + +G
Sbjct: 293 SALLGMYEKCGEIAEARRVFDTI-IDKDIVAWNAMITGYAQNG 334


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 256/463 (55%), Gaps = 32/463 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+VSWN+M+  Y + G   E   +FR+M+    + P+ VTV  VL AC    D+V 
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVL 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  +   + ++MD  + +AL+GMY KCG +  AR + D + DKD V+          
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVA---------- 322

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  QN      + L   M+ +G+RP+ +T++ +
Sbjct: 323 ---------------------WNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGV 361

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+ G E+ GYA +     N+YV TA++D YAK G L  A  VF +   +++
Sbjct: 362 LSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNV 421

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W A+I   A +G   +A+  F  M N  G++PD +TF  VLSAC H+GLV      FN
Sbjct: 422 ASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFN 481

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ ++ I P +EHY+CMV +L+R+  + EA +F+ K+P K  A + GALL       +V
Sbjct: 482 SLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNV 541

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+ V + + ++EP N+ NY++ + +Y+ + R D++ ++R  M+E G+ K PG SW+E 
Sbjct: 542 EIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEV 601

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
           SG +  F A D     ++ +Y +L+ L+  MR EGYV   +VE
Sbjct: 602 SGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYVPNLDVE 644



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   ++N  I     +  H + L L   M  S +RP++ T+  +    + +      +  
Sbjct: 116 PTAFSYNVAIRFFASSRPHTS-LRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H    K   + + +   ++I  Y+       A++VFD    R ++ W A++ AY   G  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 257 SKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPSVEHY 314
            +   +F +M+  G + P+ VT   VL+AC   G LV   W    + S +  +   V   
Sbjct: 235 GEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG-- 292

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           + ++G+  +   I+EA      + +      W A++ G + +G
Sbjct: 293 SALLGMYEKCGEIAEARRVFDTI-IDKDIVAWNAMITGYAQNG 334


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 256/463 (55%), Gaps = 32/463 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD+VSWN+M+  Y + G   E   +FR+M+    + P+ VTV  VL AC    D+V 
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVL 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V  +   + ++MD  + +AL+GMY KCG +  AR + D + DKD V+          
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVA---------- 322

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  QN      + L   M+ +G+RP+ +T++ +
Sbjct: 323 ---------------------WNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGV 361

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L+ G E+ GYA +     N+YV TA++D YAK G L  A  VF +   +++
Sbjct: 362 LSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNV 421

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W A+I   A +G   +A+  F  M N  G++PD +TF  VLSAC H+GLV      FN
Sbjct: 422 ASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFN 481

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++ ++ I P +EHY+CMV +L+R+  + EA +F+ K+P K  A + GALL       +V
Sbjct: 482 SLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNV 541

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+ V + + ++EP N+ NY++ + +Y+ + R D++ ++R  M+E G+ K PG SW+E 
Sbjct: 542 EIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEV 601

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
           SG +  F A D     ++ +Y +L+ L+  MR EGYV   +VE
Sbjct: 602 SGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYVPNLDVE 644



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P   ++N  I     +  H + L L   M  S +RP++ T+  +    + +      +  
Sbjct: 116 PTAFSYNVAIRFFASSRPHTS-LRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H    K   + + +   ++I  Y+       A++VFD    R ++ W A++ AY   G  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 257 SKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPSVEHY 314
            +   +F +M+  G + P+ VT   VL+AC   G LV   W    + S +  +   V   
Sbjct: 235 GEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG-- 292

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           + ++G+  +   I+EA      + +      W A++ G + +G
Sbjct: 293 SALLGMYEKCGEIAEARRVFDTI-IDKDIVAWNAMITGYAQNG 334


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 248/458 (54%), Gaps = 42/458 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K +      +I  YS+ GFY++   +F EM N   LRP+   + SVL+ACG   D+  
Sbjct: 90  IPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNER-LRPNKFVIPSVLRACGHVFDLQT 148

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+ ++    + D+ +  ALI MY++C  ++ AR + D M +KD V+ +A++ GY  
Sbjct: 149 GKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQ 208

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVISGL--------------------------- 149
           +GF ++   L + M+    +P L TWN +ISG                            
Sbjct: 209 NGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQAGDKVMVQELFGLMSMHGFEPDVIS 268

Query: 150 --------VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                   VQN+ +EA     ++M   G  PN+ TISS+    +  +N++ G+E+HGYA 
Sbjct: 269 WTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAF 328

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
               + +IYV +AI+D Y+K G +  A+ +F +   R  + W ++I  YA HG   +A+ 
Sbjct: 329 AIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIE 388

Query: 262 LFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           LFN+M     +  D ++FTAVL+AC+H  LV+    +F  M  +Y I P +EHYACM+ +
Sbjct: 389 LFNQMEKTEAKKIDHLSFTAVLTACSHGRLVELGQSLFLLMHEKYKIVPRLEHYACMIDL 448

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L RA ++SEA + +  MPV+P   VWGALL      G+++L +    HL E+EP N GN 
Sbjct: 449 LGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACRQHGEIDLAEIAARHLAELEPRNAGNN 508

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           ++++NLY+ AG W+   +++   K   L K    SWI+
Sbjct: 509 MLLSNLYADAGSWENVAKLK-MGKRKRLRKFSAYSWIQ 545



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 157/339 (46%), Gaps = 13/339 (3%)

Query: 77  LWICNALIGMYAKCGSLD-----YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131
           L   + LI  Y +  +L+     +AR ++  ++  +  + S +IS Y     +     LF
Sbjct: 29  LHTFDELIKTYTRDHALNQGKHLHARLIVSGLASSNNFA-SKLISFYTETRQLSIVRKLF 87

Query: 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
             + +P       +I    ++  ++ VLD+  EMQ   +RPN   I S+     H  +L+
Sbjct: 88  DRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQ 147

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            GK +H   +++ ++ ++ V TA+ID Y++   +  A++VFD  + + L+   A++  YA
Sbjct: 148 TGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYA 207

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
            +G A +   L  +M    I+P+ VT+  ++S  A +G      ++F  MS  +G +P V
Sbjct: 208 QNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQAGDKVMVQELFGLMS-MHGFEPDV 266

Query: 312 EHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDH 368
             +  ++    +      A     +M      P++    +LL   +   +V  G+ +  +
Sbjct: 267 ISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGY 326

Query: 369 LFEIEPENTGNYI--IMANLYSQAGRWDEADRVREQMKE 405
            F I  E    Y+   + ++YS+ G   EA  +  +M E
Sbjct: 327 AFAIGVEE-DIYVRSAIVDMYSKCGLISEARMLFSKMPE 364



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 114/250 (45%), Gaps = 11/250 (4%)

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           VI G+  +  H  +  + R  Q+S +     T   +   ++    L  GK +H   + + 
Sbjct: 4   VIRGITFHGPHFKIPIIYRSFQSSSLH----TFDELIKTYTRDHALNQGKHLHARLIVSG 59

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
              +   A+ +I  Y +T  L   +++FDR    +    T +I AY+ HG     + +F+
Sbjct: 60  LASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFS 119

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
           EM N  ++P+     +VL AC H  + D +   I +++  ++  +  V     ++ + SR
Sbjct: 120 EMQNERLRPNKFVIPSVLRACGH--VFDLQTGKILHSVILRHLFESDVVVNTALIDMYSR 177

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD--HLFEIEPENTGNYI 381
            R + +A +    M  K    +  A++ G + +G  + G  + +   + +I+P N   + 
Sbjct: 178 CRHVEKARKVFDGMQEKDLVAL-NAMVLGYAQNGFAKEGFLLVEQMQMLDIKP-NLVTWN 235

Query: 382 IMANLYSQAG 391
            + + ++QAG
Sbjct: 236 TLISGFAQAG 245


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 258/456 (56%), Gaps = 4/456 (0%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S +D V W +++  + +    +E   +F EM    V +PD VT+V +   C +  D+V G
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGV-KPDEVTLVCLFGGCARLGDVVVG 137

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            + H  +++  +      CNA++ MYAK G +  AR +  EM  +  VS++ I+ G +  
Sbjct: 138 AQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRS 197

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSI 180
             V     +F  M       W  +I+G + +   +    LVREM     +  N VT+ SI
Sbjct: 198 EGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSI 257

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +  S   +L  G+ +H YA+K +  + NI V TA++D YAK G +H A + F +   R+
Sbjct: 258 LTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRN 317

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W A++S  A HG    A+ +F +M     +PD VTFT+VLSAC+HSGLVD+    F 
Sbjct: 318 VVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFG 376

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +   YGI P VEHYACMV +L RA R+ EA   V +MP++P+  V G+LL   SI G +
Sbjct: 377 NLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKL 436

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +LG+ +   L +++P+NT  +I+++N+Y+ AG+ + A+ +R+ +K+ G+ K+PG S I  
Sbjct: 437 QLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHV 496

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            G +  F A D S  ++ ++Y +L+ ++  +R  GY
Sbjct: 497 GGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGY 532



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 43/236 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V+W  MIAGY   G  +E  AL REM+    +  + VT+ S+L AC QS D++ 
Sbjct: 210 MPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMM 269

Query: 61  GMEVHNFVIESHIK-MDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  VH + +++  K +++ +  A++ MYAKCG +  A     +M  ++ VS++A++SG  
Sbjct: 270 GRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLA 329

Query: 120 VHGFVEKAMDLFQVM---KRPGLSTWNAVI-----SGLVQN------------------- 152
           +HG    A+D+F  M    +P   T+ +V+     SGLV                     
Sbjct: 330 MHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVE 389

Query: 153 ------------NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
                        R E    LVREM    +RPN V + S+    S    L+ G+ +
Sbjct: 390 HYACMVDLLGRAGRLEEAEILVREMP---IRPNEVVLGSLLGSCSIHGKLQLGEHL 442



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 177/434 (40%), Gaps = 116/434 (26%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIK--MDLWICNALIGMYAKCGSLDYARALLDEM-- 103
           +L++C + S +  G  +H  +I + I    + ++ NAL+  YA CG    AR + DE+  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           S KD V ++ ++  ++ H   ++A+ +F  M+R                           
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRR--------------------------- 111

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
                GV+P+ VT+  +F   +   ++  G + HG  VK           A++D YAK+G
Sbjct: 112 ----CGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSG 167

Query: 224 FLHGAQRVFDRFKGRSLIIWTAI-------------------------------ISAYAA 252
            +  A+RVF   KG+S++ WT I                               I+ Y  
Sbjct: 168 LMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLD 227

Query: 253 HGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSG-LVDKAWDIFNAMSGQYGIQPS 310
            G   ++ +L  EM+ +  ++ + VT  ++L+AC+ SG L+   W         Y ++  
Sbjct: 228 SGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRW------VHAYALKTK 281

Query: 311 VEHYACMVG-----VLSRARRISEATEFVSKMP--------------------------- 338
            +    MVG     + ++  RI  A +F  KMP                           
Sbjct: 282 EKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIF 341

Query: 339 ------VKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQ 389
                  KP    + ++L   S SG V+ G F   +L   + I P+   +Y  M +L  +
Sbjct: 342 PQMFKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPK-VEHYACMVDLLGR 400

Query: 390 AGRWDEADRVREQM 403
           AGR +EA+ +  +M
Sbjct: 401 AGRLEEAEILVREM 414


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 248/456 (54%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWN+MI  Y +    ++   LF EM   P    D V+  +++    +   ++ 
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM---P--EKDSVSWTAMINGYVRVGKLLQ 313

Query: 61  GMEVHNFV--------------------------IESHIKMDLWIC-NALIGMYAKCGSL 93
             E+ N +                          I S I +   +C N++I  YA CG  
Sbjct: 314 AREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRT 373

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
           D A  L  EM  KD VS++ +I+ Y   G ++KA+++F  M+   + +WN++I+G VQN 
Sbjct: 374 DEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNG 433

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
            +   L+    M+  G +P+  TI       ++ + L  G ++H   +K  +  +++V  
Sbjct: 434 LYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN 493

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           AI+  YAK+G +  A+ VF   K + ++ W ++I+ YA +G   +AV LF  M   GI P
Sbjct: 494 AILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIP 553

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D VTFT +LSAC H G VD+  ++F +M+  Y I+P  EHYAC++ +L R  R+ EA E 
Sbjct: 554 DEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEI 613

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           V  M    SAK+WGALL+   I  ++EL K+  + L  +EP+N  NY++++N++++AGRW
Sbjct: 614 VQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRW 673

Query: 394 DEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAK 429
           D  +RVR  MKE+   K PG SWIE    L  F++K
Sbjct: 674 DMVERVRVLMKENKAEKQPGCSWIEIDNQLHCFLSK 709



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 195/457 (42%), Gaps = 85/457 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNSMIAGY      E+   LF  M      + D  +   ++    +  ++  
Sbjct: 72  MPQRNLVSWNSMIAGYLHNELVEDAARLFDRMF-----KRDIYSWTLMITCYTRIGELEK 126

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+ N + +   K D    NALI  YAK      A+ L DEM  K+ VS+++I+SGY  
Sbjct: 127 ARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTK 183

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G ++  +  F+ M    + +WN ++ G V     ++     +++      PN V+  ++
Sbjct: 184 NGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPT----PNVVSWVTM 239

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S F+H+                                   G +  A+ +F+    ++L
Sbjct: 240 LSGFAHY-----------------------------------GRMTEARNLFNEMPTKNL 264

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I AY        A  LF EM     + D V++TA+++     G + +A +I N 
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREILNL 320

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +     ++     M+    ++ R+ EA E  S++ V+ S   W +++ G +  G  +
Sbjct: 321 MPYK-----NIAAQTAMINGYLQSGRMDEANEIFSQISVRDSV-CWNSMITGYAHCGRTD 374

Query: 361 -----LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
                  + VC  +       + N +I A  Y+QAG+ D+A  +  +M+E  +      S
Sbjct: 375 EALRLFQEMVCKDMV------SWNTMIAA--YAQAGQMDKALEMFNEMQERNVV-----S 421

Query: 416 WIECSGG----------LQSFVAKDTSGDKSEQIYLI 442
           W     G          L  F+     G+K +Q  ++
Sbjct: 422 WNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIV 458



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 47/352 (13%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N  I    + G ++ A A+  +M++++ V+Y+++IS Y  +G +  A +LF +M +  L 
Sbjct: 19  NLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLV 78

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN++I+G + N   E    L   M     + +  + + + + ++    L+  +E+    
Sbjct: 79  SWNSMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGELEKARELFNL- 133

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           + ++ D       A+I  YAK      A+++FD    ++++ W +I+S Y  +G     +
Sbjct: 134 LPDKQD--TVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGL 191

Query: 261 SLFNEMLNNGI---------------------------QPDPVTFTAVLSACAHSGLVDK 293
             F  M    +                            P+ V++  +LS  AH G + +
Sbjct: 192 QFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTE 251

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           A ++FN M  +     ++  +  M+G   R  +I +A +   +MP K S   W A+    
Sbjct: 252 ARNLFNEMPTK-----NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVS-WTAM---- 301

Query: 354 SISGDVELGKFV-CDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQM 403
            I+G V +GK +    +  + P +N      M N Y Q+GR DEA+ +  Q+
Sbjct: 302 -INGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQI 352



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 9/144 (6%)

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           ++     I    ++G +  A  VF +   R+++ + ++ISAYA +G  + A  LF+ M  
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLM-- 72

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
              Q + V++ ++++   H+ LV+ A  +F+ M      +  +  +  M+   +R   + 
Sbjct: 73  --PQRNLVSWNSMIAGYLHNELVEDAARLFDRM-----FKRDIYSWTLMITCYTRIGELE 125

Query: 329 EATEFVSKMPVKPSAKVWGALLYG 352
           +A E  + +P K       AL+ G
Sbjct: 126 KARELFNLLPDKQDTVCRNALIAG 149


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 245/455 (53%), Gaps = 33/455 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD VSWNSMI  Y Q     +   LF+EM+    L  D  T+ SVL A     D+  G++
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG-LNVDMFTLASVLTAFTCLEDLSGGLQ 261

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H  +I++    +  + + LI +Y+KCG           MSD  +V              
Sbjct: 262 FHGQLIKTGFHQNSHVGSGLIDLYSKCGG---------GMSDCRKV-------------- 298

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISSIFS 182
                  F+ +  P L  WN ++SG  QN    E  L+  R+MQ  G RPN  +   + S
Sbjct: 299 -------FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
             S+ S+   GK+IH  A+K+    N I V  A+I  Y+K G L  A+R+FDR    + +
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTV 411

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
              ++I+ YA HG   +++ LF  ML   I P  +TF +VLSACAH+G V++ W+ FN M
Sbjct: 412 SLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMM 471

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             ++ I+P  EHY+CM+ +L RA ++SEA   +++MP  P +  W +LL      G++EL
Sbjct: 472 KEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIEL 531

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
                + + ++EP N   Y++++N+Y+ AGRW+E   VR+ M++ G+ K PG SWIE   
Sbjct: 532 AVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKK 591

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FVA+D+S    ++IY  LE + G M+  GYV
Sbjct: 592 RIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYV 626



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 3/238 (1%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L+ C    D+  G  +H+  I+S I    +  N  I +Y+KCG L +AR    ++SD +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++AII+ Y        A  LF  +  P L ++N +IS           L L   M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            G+  +  T+S++ +       L G  ++H  AV + +D  + V  A++  Y K G L  
Sbjct: 134 MGLDMDXFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 228 AQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           A+RVF    G R  + W ++I AY  H + SKA+ LF EM+  G+  D  T  +VL+A
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 194/442 (43%), Gaps = 81/442 (18%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALF---REMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           D+VS+N++I+ Y+  G       LF   REM     L  D  T+ +V+ AC    D+   
Sbjct: 104 DLVSYNTLISAYADCGETAPALGLFSGMREM----GLDMDXFTLSAVITAC--CDDVGLI 157

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMV 120
            ++H+  + S     + + NAL+  Y K G LD A+ +   M   +DEVS++++I  Y  
Sbjct: 158 GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQ 217

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           H    KA+ LFQ M R GL+                                +  T++S+
Sbjct: 218 HQEGSKALGLFQEMVRRGLNV-------------------------------DMFTLASV 246

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT-GFLHGAQRVFDRFKGRS 239
            + F+   +L GG + HG  +K  + +N +V + +ID Y+K  G +   ++VF+      
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 240 LIIWTAIISAYAAHGD-ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           L++W  ++S Y+ + +    A+  F +M   G +P+  +F  V+SAC++     +   I 
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 299 ------NAMSGQYGIQPSVEHYACMVGVLSRARRISEAT--------------------- 331
                 +  S +  +  ++       G L  ARR+ +                       
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 332 -------EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
                  +++ +  + P++  + ++L   + +G VE G    + +   F IEPE   +Y 
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPE-AEHYS 485

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            M +L  +AG+  EA+ +  +M
Sbjct: 486 CMIDLLGRAGKLSEAENLIARM 507



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 40/288 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQG-GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           +++ D+V WN+M++GYSQ   F E+    FR+M      RP+  + V V+ AC   S   
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQM-QGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 60  FGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            G ++H+  ++S I  + + + NALI MY+KCG+L  AR L D M++ + VS +++I+GY
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             HG   +++ LFQ M                          L R+     + P ++T  
Sbjct: 421 AQHGIEMESLHLFQWM--------------------------LERQ-----IAPTSITFI 449

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFK 236
           S+ S  +H   ++ G       +K +++        + +ID   + G L  A+ +  R  
Sbjct: 450 SVLSACAHTGRVEEGWNYFNM-MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 237 -GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
                I W +++ A   HG+   AV   N++L   ++P       VLS
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQ--LEPSNAAPYVVLS 554



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++ + VS NSMIAGY+Q G   E   LF+ ML   +  P  +T +SVL AC  +  +  
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA-PTSITFISVLSACAHTGRVEE 463

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G    N + E  +I+ +    + +I +  + G L  A  L+  M  +   + +++++   
Sbjct: 464 GWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 119 MVHGFVEKAMDLF-QVMK-RPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
             HG +E A+    QV++  P  +    V+S +  +  R E V  + + M+  GV+
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 579



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL------KGGKEIHGY 199
           IS  +Q  RH     +     ++G   +++ I S     ++FSN       K G+     
Sbjct: 4   ISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWAR 63

Query: 200 -AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
            A ++  D N++   AII  YAK      A ++FD+     L+ +  +ISAYA  G+ + 
Sbjct: 64  KAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAP 123

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACA---------HSGLVDKAWDIF----NAMSGQY 305
           A+ LF+ M   G+  D  T +AV++AC          HS  V   +D +    NA+   Y
Sbjct: 124 ALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 306 G 306
           G
Sbjct: 184 G 184


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 250/472 (52%), Gaps = 42/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+V++N++I+GYS  G  E    LF+E L +   RP+  T+V+V+         + 
Sbjct: 273 MDNPDLVAYNALISGYSVNGMVESSVELFKE-LTASGWRPNSSTLVAVIPVYSPFGHELL 331

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H FV+++ +  D  +  AL  +Y +   ++ AR++ D M                 
Sbjct: 332 ARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAM----------------- 374

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +EK M+           +WNA+ISG  QN   E  + L + MQ   V+PN +TISS 
Sbjct: 375 ---LEKTME-----------SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISST 420

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +H   L  GK +H    K + + N+YV TA+ID YAK G +  A+ +FDR   +++
Sbjct: 421 LSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNV 480

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS Y  HG  ++A+ L+ +ML+  I P   TF +V+ AC+H GLVD+   +F  
Sbjct: 481 VSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRV 540

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M+ +Y I P +EH  CMV +L RA +++EA E +S+ P   + P   VWGALL    +  
Sbjct: 541 MTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPG--VWGALLGACMVHK 598

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           + +L K     LFE++ EN G Y++++NLY+    + EA  VR++ K   L K PG + I
Sbjct: 599 NSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLI 658

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
           E       F+A D    +SE IY  LERL   M E GY       L +VEEE
Sbjct: 659 EIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEE 710



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 187/400 (46%), Gaps = 38/400 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D + WN+++AG       E     F  M+++  +RPD  T+ S L+A  ++S +  G  V
Sbjct: 179 DTILWNTLLAGLPGSEALEA----FVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCV 234

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + ++  +     +   L+ +Y+KCG +D A+ L D M +                   
Sbjct: 235 HGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDN------------------- 275

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                       P L  +NA+ISG   N   E+ ++L +E+ ASG RPN+ T+ ++  ++
Sbjct: 276 ------------PDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVY 323

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S F +    + +H + VK R D +  V+TA+   Y +   +  A+ +FD    +++  W 
Sbjct: 324 SPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWN 383

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+IS YA +G    AV+LF  M    +QP+P+T ++ LSACAH G +     +   +S +
Sbjct: 384 AMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKE 443

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD-VELGK 363
             ++ +V     ++ + ++   I+EA     +M  K +   W A++ G  + G   E  K
Sbjct: 444 -KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-NVVSWNAMISGYGLHGQGAEALK 501

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
              D L       +  ++ +    S  G  DE  +V   M
Sbjct: 502 LYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVM 541



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 49/337 (14%)

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D    SA+   Y      + A  +F  +  P    WN +++GL  +   EA+   VR + 
Sbjct: 148 DTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS---EALEAFVRMVD 204

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
           A  VRP++ T++S     +  S++  G+ +HGY VK     + +V T ++  Y+K G + 
Sbjct: 205 AGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMD 264

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV----- 281
            AQ +FDR     L+ + A+IS Y+ +G    +V LF E+  +G +P+  T  AV     
Sbjct: 265 SAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYS 324

Query: 282 ------LSACAHSGLV------------------------DKAWDIFNAMSGQYGIQPSV 311
                 L+ C H+ +V                        + A  IF+AM     ++ ++
Sbjct: 325 PFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAM-----LEKTM 379

Query: 312 EHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           E +  M+   ++      A    + + ++ V+P+     + L   +  G + LGK+V   
Sbjct: 380 ESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWV-HR 438

Query: 369 LFEIEPENTGNYIIMA--NLYSQAGRWDEADRVREQM 403
           +   E      Y++ A  ++Y++ G   EA  + ++M
Sbjct: 439 IISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRM 475



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
             + +HG +V   Y  + +VA+A+   Y K      A++VFD       I+W  +++   
Sbjct: 132 AARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP 191

Query: 252 AHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
                S+A+  F  M++ G ++PD  T  + L A A +  +     +       YG++  
Sbjct: 192 ----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHG-----YGVKCG 242

Query: 311 V-EHYACMVGVLSRARRIS--EATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           + EH   + G++S   +    ++ +F+      P    + AL+ G S++G VE
Sbjct: 243 LAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVE 295


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 250/451 (55%), Gaps = 6/451 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKA--LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           DIVSW  +I+ Y      + CKA  +F  + +S  LRPD   VV  + ACG   D+  G 
Sbjct: 318 DIVSWTCLISLYLHTS--QPCKAFSIFSHLFHSG-LRPDSFCVVGAVSACGHRKDLSNGR 374

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH  V    +  D  + NALI MY++ G+++ A ++   M  KD  S++++++G++   
Sbjct: 375 IVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCN 434

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
            +E A  +F  M      +W A+I+G VQ       L+L +EM+A G   P  +TI ++ 
Sbjct: 435 DIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVL 494

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +       G  +HGY  K   D ++ V  A++D YAK+G L  A ++F     R + 
Sbjct: 495 SGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVF 554

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT +IS  A HG  + A+  F++M  +G  P+ VT  +VLSAC+H+GLV +   +F  M
Sbjct: 555 SWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKM 614

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              +GI+P ++HY CMV +L RA  + EA E +  MP+KP + +W +LL    + G++ L
Sbjct: 615 VQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLAL 674

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +     + E+EP++ G YI++ N+Y  A RW++A + R+ M++  + K PG SW+E +G
Sbjct: 675 AEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNG 734

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
            +  F+A+D        +Y +LE +   M++
Sbjct: 735 VVHEFLAEDAVHCIRADVYTVLEAITEQMKD 765



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 33/261 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW +MI GY QG        LF+EM       P  +T+V+VL  C        
Sbjct: 446 MPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL 505

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +V ++++ +D+ + NAL+ MYAK G+L  A  +  EM  +D  S++ +ISG  +
Sbjct: 506 GSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLAL 565

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG    A++ F                                +M  SG  PN VT+ S+
Sbjct: 566 HGKGTHALEAFS-------------------------------DMSKSGXXPNEVTLLSV 594

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            S  SH   +  G+ +    V+ +     I     ++D   + G L  A+ + +    + 
Sbjct: 595 LSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKP 654

Query: 239 SLIIWTAIISAYAAHGDASKA 259
             +IW +++SA   HG+ + A
Sbjct: 655 DSVIWRSLLSACLVHGNLALA 675



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 46/313 (14%)

Query: 86  MYAKCGSLDYARAL------LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           +  KCGSL+  + +      L  +  K +     +++ Y   G    A  +F  ++ P +
Sbjct: 260 LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDI 319

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            +W  +IS  +  ++      +   +  SG+RP++  +    S   H  +L  G+ +HG 
Sbjct: 320 VSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 379

Query: 200 AVKNRYDRNIYVATAIIDTYAKTG----------------------FLHG---------A 228
             +     +  V  A+ID Y+++G                       L+G         A
Sbjct: 380 VFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAA 439

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAH 287
           +R+FD    R+ + WTA+I+ Y         + LF EM   G   P  +T  AVLS CA 
Sbjct: 440 RRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCAD 499

Query: 288 SGLVDKAWDIFNAMSG---QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
            G    A+D+ +++ G   +  +   V     ++ + +++  +  A +   +MP K    
Sbjct: 500 IG----AFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP-KRDVF 554

Query: 345 VWGALLYGASISG 357
            W  ++ G ++ G
Sbjct: 555 SWTTMISGLALHG 567


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 249/451 (55%), Gaps = 36/451 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           + + SWN++I GYSQ          + +M +S +L PD  TV S+L AC Q   +  G E
Sbjct: 457 KTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLL-PDLFTVCSLLSACSQIKSLKLGKE 515

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  +I + ++ D ++  +L+ +Y  CG L  A                           
Sbjct: 516 VHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHV------------------------- 550

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                 LF  M+   L +WN +++G +QN   E  L L R+M   GV+P  +++ S+F  
Sbjct: 551 ------LFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGA 604

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +L+ G+E HGYA+K   + N ++A ++ID YAK G +  + +VF+  K RS+  W
Sbjct: 605 CSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASW 664

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A++  Y  HG A +A+ LF EM   G  PD +TF  VL+AC HSGLV +     + M  
Sbjct: 665 NAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKT 724

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVS-KMPVKPSAKVWGALLYGASISGDVELG 362
            +G+ P+++HYAC++ +L RA ++ EA +  + +M  +P   +W  LL    I  ++E+G
Sbjct: 725 LFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMG 784

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + +   LF  EPE   NY++++NLY+ +G+WDE  +VR++MKE  L K  G SWIE +G 
Sbjct: 785 EKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGK 844

Query: 423 LQSFVAKDTSGDKSEQI---YLILERLLGLM 450
           + SFVA ++S D  E+I   + +LER +G M
Sbjct: 845 VFSFVAGESSLDGFEEIKSLWSVLEREIGKM 875



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 81/448 (18%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++VSWN+M+ G+S  G   +   L R+ML     LR D VT+++ +  C + S +  
Sbjct: 351 NNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPN 410

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
             E+H + ++   +  +  + NA +  YAKCGSL YA  +                    
Sbjct: 411 LKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRV-------------------- 450

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                      F  ++   +++WNA+I G  Q++     LD   +M++SG+ P+  T+ S
Sbjct: 451 -----------FCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCS 499

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S  S   +LK GKE+HG  ++NR +R+ +V  +++  Y   G L  A  +FD  + ++
Sbjct: 500 LLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKT 559

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-------------- 285
           L+ W  +++ Y  +G   +A+SLF +M+  G+QP  ++  +V  AC              
Sbjct: 560 LVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHG 619

Query: 286 ---------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV---GVL 321
                                A +G V +++ +FN +      + SV  +  MV   G+ 
Sbjct: 620 YALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLK-----ERSVASWNAMVMGYGIH 674

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH---LFEIEPENTG 378
            RA+   +  E + +    P    +  +L   + SG V  G    D    LF + P    
Sbjct: 675 GRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNP-TLK 733

Query: 379 NYIIMANLYSQAGRWDEADRV-REQMKE 405
           +Y  + ++  +AG+ DEA ++  E+M E
Sbjct: 734 HYACVIDMLVRAGKLDEALKIATEEMSE 761



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 37/293 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSD 57
           M +R++VSWNSMI  +S  G  EEC  L  +M+   +     PD  T+ +VL  C +  +
Sbjct: 245 MPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDRE 304

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           I  G  VH   ++  +  ++ + NAL+ MY+KCG ++ A+ +    ++K+ VS++ ++ G
Sbjct: 305 IGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGG 364

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAV 175
           +   G + K                                 DL+R+M A G  +R + V
Sbjct: 365 FSAAGDIHKT-------------------------------FDLLRQMLAGGGDLRADEV 393

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           TI +   +    S L   KE+H Y++K  +   N  VA A + +YAK G L  A RVF  
Sbjct: 394 TILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCS 453

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
            + +++  W A+I  Y+   D   ++  + +M ++G+ PD  T  ++LSAC+ 
Sbjct: 454 IRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQ 506



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 159/367 (43%), Gaps = 38/367 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K+++  WN++I+ YS+   Y     +F +M+    L PD  T   V++AC   S++  
Sbjct: 143 LRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQV 202

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH  V+++ +  D+++ NAL+  Y   GS                            
Sbjct: 203 GLAVHGLVVKTRLVEDVFVSNALVSFYGTNGS---------------------------- 234

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GVRPNAVT 176
              V  A+ +F++M    L +WN++I     N   E    L+ +M          P+  T
Sbjct: 235 ---VSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVAT 291

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ++++  + +    +  GK +HG A+K   D+ + V  A++D Y+K G ++ AQ +F    
Sbjct: 292 LATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNN 351

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKA 294
            ++++ W  ++  ++A GD  K   L  +ML  G  ++ D VT    +  C    ++   
Sbjct: 352 NKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNL 411

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            ++      Q  +  +       V   ++   +S A      +  K +   W AL+ G S
Sbjct: 412 KELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSK-TVNSWNALIGGYS 470

Query: 355 ISGDVEL 361
            S D  L
Sbjct: 471 QSSDPRL 477



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 39/316 (12%)

Query: 50  QACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE 108
           QA G+  DI  G ++H  V ES  +  D  +C  +I MY+ CGS D +R++ D +  K  
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKK-- 146

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL-VREMQA 167
                               +LFQ         WNAVIS   +N  +  VL++ V+ +  
Sbjct: 147 --------------------NLFQ---------WNAVISSYSRNELYHNVLEMFVKMITE 177

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           SG+ P+  T   +    +  S ++ G  +HG  VK R   +++V+ A++  Y   G +  
Sbjct: 178 SGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSD 237

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN----GIQPDPVTFTAVLS 283
           A RVF     R+L+ W ++I  ++ +G + +   L  +M+         PD  T   VL 
Sbjct: 238 ALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLP 297

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            CA    +     + + ++ +  +   V     ++ + S+   I++A + + K+    + 
Sbjct: 298 VCARDREIGVGKGV-HGLAMKLSLDKEVVVNNALMDMYSKCGCINDA-QVIFKLNNNKNV 355

Query: 344 KVWGALLYGASISGDV 359
             W  ++ G S +GD+
Sbjct: 356 VSWNTMVGGFSAAGDI 371



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 84/138 (60%), Gaps = 1/138 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +VSWN+M+ GY Q GF E   +LFR+M+   V +P  ++++SV  AC     +  
Sbjct: 555 MEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGV-QPCEISMMSVFGACSLLPSLRL 613

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E H + ++  ++ + +I  ++I MYAK GS+  +  + + + ++   S++A++ GY +
Sbjct: 614 GREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGI 673

Query: 121 HGFVEKAMDLFQVMKRPG 138
           HG  ++A+ LF+ M+R G
Sbjct: 674 HGRAKEAIKLFEEMQRTG 691


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 259/495 (52%), Gaps = 48/495 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +NS+I GYS      +   LFR M+ S  L P+  T+  VL+ACG  S     + VH   
Sbjct: 182 YNSLIRGYSNSDDPIDAVLLFRRMICSG-LSPNEFTLPFVLKACGCKSAYWEAVLVHGLA 240

Query: 69  IE-----------------------------------------------SHIKMDLWICN 81
           I+                                               + +K+D+ + N
Sbjct: 241 IKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRN 300

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           AL  MYAKCG+L  A+A+ D   +K+ VS++++IS Y  HG +E A  +F  M    + +
Sbjct: 301 ALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVS 360

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN++IS  ++  ++   LDL  +M+ S V P+  T+ SI +  S   +L  GK+IH Y +
Sbjct: 361 WNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYIL 420

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            N+    + +  ++ID YAK G +  A  +F    G++L+ W  II A A HG   +A+ 
Sbjct: 421 SNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIK 480

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           LF EM  +G  PD +T T +LSAC+HSGLVD     F+ M   Y +   +EHYACMV +L
Sbjct: 481 LFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLL 540

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
            R   + EA E + +MP+KP   VWGALL    I G+VE+GK +   L E+EP + G Y+
Sbjct: 541 GRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYV 600

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYL 441
           +++N+Y +A RW++  ++R+ M + G+ K    S IE  G +  F+  D     S  IY 
Sbjct: 601 LISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYA 660

Query: 442 ILERLLGLMREEGYV 456
           +L++L   +R  GY+
Sbjct: 661 MLDQLTDHLRSAGYL 675



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWNSMI+ Y + G Y E   LF +M NS V+ PD  T+VS+L AC Q  D+V 
Sbjct: 353 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVM 411

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++HN+++ +     + + N+LI MYAKCG +  A  +  EM  K+ VS++ II    +
Sbjct: 412 GKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALAL 471

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           HG   +A+ LF+ M+  G       ++GL+    H  ++D+
Sbjct: 472 HGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDM 512



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 37/294 (12%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G ++ A  +F  + +P    +N++I G   ++     + L R M  SG+ PN  T+  + 
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                 S       +HG A+K      ++V  A+I  Y   G +H A+++FD    ++L+
Sbjct: 222 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 281

Query: 242 IWTAII----------------SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
            W ++I                  YA  G+   A ++F+      +    V++T+++SA 
Sbjct: 282 SWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNV----VSWTSMISAY 337

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPS 342
           A  G ++ A  IF+ M G+     +V  +  M+    R  +  EA +  +KM    V P 
Sbjct: 338 AQHGSIEVARQIFDQMPGK-----NVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPD 392

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII-----MANLYSQAG 391
                ++L   S  GD+ +GK + +++      N G Y +     + ++Y++ G
Sbjct: 393 EATLVSILAACSQLGDLVMGKKIHNYIL----SNKGAYGVTLYNSLIDMYAKCG 442



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 25/235 (10%)

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--KTGFLHGAQRVFDRFKGRSLIIWTA 245
           S+++G K +H   + +           +I   A    G L  AQR+FD+    +  ++ +
Sbjct: 125 SSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNS 184

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD--IFNAMSG 303
           +I  Y+   D   AV LF  M+ +G+ P+  T   VL AC   G     W+  + + ++ 
Sbjct: 185 LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKAC---GCKSAYWEAVLVHGLAI 241

Query: 304 QYGI------QPSVEHYACMVGVLSRARR----ISEAT-----EFVSKMPVKPSAKVWGA 348
           + GI      Q ++     + G++  AR+    I++ T       +    VK    V  A
Sbjct: 242 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNA 301

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           L    +  G++   + + D     + +N  ++  M + Y+Q G  + A ++ +QM
Sbjct: 302 LXDMYAKCGNLHSAQAIFD---RTQEKNVVSWTSMISAYAQHGSIEVARQIFDQM 353


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 272/521 (52%), Gaps = 69/521 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDIVSWNSMI+GY   G       LF+EML     +PD  + +S L AC        
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG-FKPDRFSTMSALGACSHVYSPKM 249

Query: 61  GMEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSY-------- 111
           G E+H   + S I+  D+ +  +++ MY+K G + YA  + + M  ++ V++        
Sbjct: 250 GKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309

Query: 112 ----------------------------------SAIISGYMVHGF-------------- 123
                                             SAI+ G  +HG+              
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLET 369

Query: 124 -----------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
                      ++ A  +F  M    + +WN++I+  VQN ++ + L+L +E+  S + P
Sbjct: 370 ALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVP 429

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           ++ TI+SI   ++   +L  G+EIH Y VK+RY  N  +  +++  YA  G L  A++ F
Sbjct: 430 DSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCF 489

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           +    + ++ W +II AYA HG    +V LF+EM+ + + P+  TF ++L+AC+ SG+VD
Sbjct: 490 NHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVD 549

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + W+ F +M  +YGI P +EHY CM+ ++ R    S A  F+ +MP  P+A++WG+LL  
Sbjct: 550 EGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNA 609

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
           +    D+ + +F  + +F++E +NTG Y+++ N+Y++AGRW++ +R++  M+  G+++  
Sbjct: 610 SRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTS 669

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
            RS +E  G    F   D S   + +IY +L+ +  ++ EE
Sbjct: 670 SRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEE 710



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 34/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+K D   WN MI G++  G Y E    +  M+ + V + D  T   V+++    S +  
Sbjct: 90  MNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGV-KADTFTYPFVIKSVAGISSLEE 148

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI+     D+++CN+LI +Y K G    A  + +EM ++D VS++++ISGY+ 
Sbjct: 149 GKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G               G S+                 L L +EM   G +P+  +  S 
Sbjct: 209 LG--------------DGFSS-----------------LMLFKEMLKCGFKPDRFSTMSA 237

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
               SH  + K GKEIH +AV++R +  ++ V T+I+D Y+K G +  A+R+F+    R+
Sbjct: 238 LGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRN 297

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACA 286
           ++ W  +I  YA +G  + A   F +M   NG+QPD +T   +L A A
Sbjct: 298 IVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA 345



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 60/340 (17%)

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           + G+     +E A+ LF  M +     WN +I G      +   +     M  +GV+ + 
Sbjct: 71  LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T   +    +  S+L+ GK+IH   +K  +  ++YV  ++I  Y K G    A++VF+ 
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS------ 288
              R ++ W ++IS Y A GD   ++ LF EML  G +PD  +  + L AC+H       
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMG 250

Query: 289 ------------------------------GLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
                                         G V  A  IFN M     IQ ++  +  M+
Sbjct: 251 KEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-----IQRNIVAWNVMI 305

Query: 319 GVLSRARRISEATEFVSKMP----VKPSAKV------WGALLYGASISGDVELGKFVCDH 368
           G  +R  R+++A     KM     ++P            A+L G +I G      F+   
Sbjct: 306 GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHM 365

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + E           + ++Y + G+   A+ + ++M E  +
Sbjct: 366 VLETA---------LIDMYGECGQLKSAEVIFDRMAEKNV 396


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 256/454 (56%), Gaps = 4/454 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ--SSDIVFGME 63
           IV W S +A Y + G   E  A F  M  + V  P+ +T +++L AC    S    F   
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGV-EPNHITFITLLSACADFPSESFFFASS 115

Query: 64  VHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +  +  +    + +  ALI MY+KC  L +AR +   +  K+ VS++ +++G+M +G
Sbjct: 116 LHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNG 175

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A+ LF  M      +W A+I+GL+++   E  L+   +MQ SGV  + V+I ++ +
Sbjct: 176 EIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLA 235

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L  G  +H + +   +  NI ++ ++ID Y++ G +  A++VF +   R+L+ 
Sbjct: 236 ACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVS 295

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +II  +A +G A +++  F  M   G +PD V++T  L+AC+H+GLV+K  ++F+ M 
Sbjct: 296 WNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK 355

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             + I P +EHY C+V +  RA R+ +A   + +MP+KP+  V G+LL      GDV L 
Sbjct: 356 SVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLA 415

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + +  HLF+++PE    Y++++N+Y+  G+WD A+ VR  MK  G+ K PG S +E  G 
Sbjct: 416 ERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGK 475

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  FVA D     ++ IY +L+ L   ++  GYV
Sbjct: 476 VHEFVAGDNYHADADNIYSMLDLLCHELKVCGYV 509



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 63/311 (20%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR------------------------ 39
           ++ VSWN+M+ G+ + G  E    LF EM     +                         
Sbjct: 159 KNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQM 218

Query: 40  ------PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93
                  D V++++VL AC     +  G+ VH FV+    K ++ I N+LI MY++CG +
Sbjct: 219 QRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCI 278

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
           ++AR +  +M+ +  VS+++II G+ V+GF +++++ F  M++ G        +G +   
Sbjct: 279 EFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTAC 338

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
            H  +++   E+                     F N+K   +I            I    
Sbjct: 339 SHAGLVNKGLEL---------------------FDNMKSVHKI---------TPRIEHYG 368

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
            I+D Y + G L  A  + +    + + ++  ++++A   HGD + A  L   +    + 
Sbjct: 369 CIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK--LD 426

Query: 273 PDPVTFTAVLS 283
           P+   +  +LS
Sbjct: 427 PEGDAYYVLLS 437



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 10/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+KR +VSWNS+I G++  GF +E    F  M      +PDGV+    L AC  +  +  
Sbjct: 288 MAKRTLVSWNSIIVGFAVNGFADESLEFFXAM-QKEGFKPDGVSYTGALTACSHAGLVNK 346

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+E+ + +   H    +++ + C  ++ +Y + G L+ A  +++EM  K +EV   ++++
Sbjct: 347 GLELFDNMKSVHKITPRIEHYGC--IVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLA 404

Query: 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
               HG V  A  L + + +  P    +  ++S +     + +   ++ R M+A GV+
Sbjct: 405 ACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQ 462


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 249/456 (54%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN++IA + Q G  E+  +LF  ML S  + PD  T  SVL+AC     +  
Sbjct: 374 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG-MEPDEFTYGSVLKACAGWQALNC 432

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+HN +I+S + +D ++  ALI MY+KCG ++ A  L D ++++  V           
Sbjct: 433 GMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV----------- 481

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               +WNA+ISG     + E       +M   GV P+  T ++I
Sbjct: 482 --------------------SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI 521

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++   ++ GK+IH   +K     + Y+++ ++D Y+K G +   Q +F++   R  
Sbjct: 522 LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF 581

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A++  YA HG   +A+ +F  M    ++P+  TF AVL AC H GLV+K    F++
Sbjct: 582 VTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHS 641

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY+C+V ++ R+ ++S+A E +  MP +  A +W  LL    I G+VE
Sbjct: 642 MLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVE 701

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +     + ++EPE++  Y++++N+Y+ AG W+E  ++R+ M+ +GL K PG SWIE  
Sbjct: 702 VAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIK 761

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F+  D +  +S++IY  L+ L   M+  GY+
Sbjct: 762 SEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYM 797



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 34/357 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +   ++ S+N++I GY++     E   +FR +L    L  D V++    +AC      + 
Sbjct: 273 LPNHNLQSYNAIIVGYARSDKGIEALGMFR-LLQKSGLGLDEVSLSGAXRACAVIKGDLE 331

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   ++S  + ++ + NA++ MY KCG+L  A  + +EM  +D VS          
Sbjct: 332 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS---------- 381

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+   QN   E  L L   M  SG+ P+  T  S+
Sbjct: 382 ---------------------WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSV 420

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               + +  L  G EIH   +K+R   + +V  A+ID Y+K G +  A+++ DR   +++
Sbjct: 421 LKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 480

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W AIIS ++    + +A   F++ML  G+ PD  T+  +L  CA+   V+    I +A
Sbjct: 481 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQI-HA 539

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              +  +Q      + +V + S+   + +      K P +     W A++ G +  G
Sbjct: 540 QIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV-TWNAMVCGYAQHG 595



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 205/448 (45%), Gaps = 47/448 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR----------EMLNSPVLRP----DGVTVV 46
           M +RD VSWN+M+ GY+  G     + LF           E+ +  + R     D  T  
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFA 162

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC---------------- 90
            VL++C    D   G+++H   ++     D+   +AL+ MYAKC                
Sbjct: 163 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKE 222

Query: 91  ------GSLDYARALLDEMSDKDEVSYSAIISGYM-VHGFVEKAMDLFQVMKRPGLSTWN 143
                 G+L      L      D V  +A +  YM  +   + +  LF  +    L ++N
Sbjct: 223 MQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYN 282

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A+I G  ++++    L + R +Q SG+  + V++S      +       G ++HG ++K+
Sbjct: 283 AIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKS 342

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
               NI VA AI+D Y K G L  A  VF+    R  + W AII+A+  +G+  K +SLF
Sbjct: 343 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF 402

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMSGQYGIQPSVEHYACMVGVLS 322
             ML +G++PD  T+ +VL ACA    ++   +I N  +  + G+   V     ++ + S
Sbjct: 403 VWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVG--IALIDMYS 460

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNY 380
           +   + +A +   ++  + +   W A++ G S+    E  +     + E  ++P+N    
Sbjct: 461 KCGMMEKAEKLHDRL-AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYA 519

Query: 381 IIM---ANLYS-QAGRWDEADRVREQMK 404
            I+   ANL + + G+   A  ++++++
Sbjct: 520 TILDTCANLVTVELGKQIHAQIIKKELQ 547



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 38/281 (13%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T   + Q C     +  G + H  +I +  K  +++ N LI MY KC  L +A  + D M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL-------------------STWNA 144
             +D VS++A++ GY   G +  A  LF  M   G                    +T+  
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS----NLKGGKE----- 195
           V+        H   + +       G   + VT S++  +++       +L+GG E     
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 196 ---------IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG-AQRVFDRFKGRSLIIWTA 245
                    +HG+A+K  +  ++ + TA +D Y K   L   + ++F+     +L  + A
Sbjct: 224 QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           II  YA      +A+ +F  +  +G+  D V+ +    ACA
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACA 324


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/419 (35%), Positives = 239/419 (57%), Gaps = 34/419 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S  D+VSW +MI GY+Q G+  E   LF +     +L P+ VT  SVL AC Q+  +  
Sbjct: 299 LSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLL-PNTVTTSSVLSACAQTGSLNM 357

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH   I+   + D    NAL+ MYAKC  +  AR + + + DKD +++++IISGY  
Sbjct: 358 GRSVHCLGIKLGSE-DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQ 416

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G+  +A++LF                                +M++  V P+A+T+ S+
Sbjct: 417 NGYAYEALELFD-------------------------------QMRSDSVYPDAITLVSV 445

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +     + G  +HGYA+K      ++YV TA+++ YAK G    A+ +FD    ++
Sbjct: 446 LSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKN 505

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            I W+A+I  Y   GD S+++ LF +ML   ++P+ V FT +LSAC+HSG++ + W  FN
Sbjct: 506 TITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFN 565

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y   PS++HYACMV +L+RA R+ EA +F+ K+P++P   + GA L+G  +    
Sbjct: 566 TMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRF 625

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +LG+     + E+ P+    Y++M+NLY+  GRW +A++V E MK+ GLAK+PG S ++
Sbjct: 626 DLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVD 684



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 172/368 (46%), Gaps = 60/368 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++V W SMI GY Q    +E   LF  M    ++  +  T+ S++ AC +   +  G  
Sbjct: 201 RNVVCWTSMIVGYVQNDCLKEGLVLFNRM-REGLVEGNQYTLGSLVTACTKLGALHQGKW 259

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +VI+S   ++ ++   L+ +Y KCG +  A ++ DE+S  D VS++A+I GY   G+
Sbjct: 260 VHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGY 319

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A+ LF                    + R + +L            PN VT SS+ S 
Sbjct: 320 PREALKLF-------------------TDERWKDLL------------PNTVTTSSVLSA 348

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   +L  G+ +H   +K   +   +   A++D YAK   +  A+ VF+    + +I W
Sbjct: 349 CAQTGSLNMGRSVHCLGIKLGSEDATF-ENALVDMYAKCHMIGDARYVFETVFDKDVIAW 407

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            +IIS Y  +G A +A+ LF++M ++ + PD +T  +VLSACA                G
Sbjct: 408 NSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACAS--------------VG 453

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEA-TEFVSKMPVKPSAKV------------WGALL 350
            Y +  S+  YA   G+LS +  +  A   F +K     SA+V            W A++
Sbjct: 454 AYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMI 513

Query: 351 YGASISGD 358
            G  I GD
Sbjct: 514 GGYGIQGD 521



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 138/285 (48%), Gaps = 32/285 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+ SW  MI  Y     Y E    +   L   +   D V    VL+AC +  +   G ++
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 160

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +++     D ++   L+ MYAKC  ++ +R + DE+ D++ V ++++I GY+ +  +
Sbjct: 161 HCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCL 219

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           ++ + LF  M+            GLV+ N++                    T+ S+ +  
Sbjct: 220 KEGLVLFNRMRE-----------GLVEGNQY--------------------TLGSLVTAC 248

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  GK +HGY +K+ +D N ++ T ++D Y K G +  A  VFD      L+ WT
Sbjct: 249 TKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWT 308

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           A+I  YA  G   +A+ LF +     + P+ VT ++VLSACA +G
Sbjct: 309 AMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTG 353



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            +++ +  FSL      +   ++IH   V +    ++   T ++  Y   G +  A+ +F
Sbjct: 35  QSISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMF 94

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACA 286
           DR +   L  W  +I  Y  +   S+ V  +N  L   +   D V F+ VL AC+
Sbjct: 95  DRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACS 149


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 264/464 (56%), Gaps = 36/464 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           + ++D+++WN++I+GYSQ  ++E+ +AL  F EM +   +  +  T+ ++L++      +
Sbjct: 393 LPEKDLIAWNAIISGYSQ--YWEDMEALSLFVEM-HKEGIGFNQTTLSTILKSTAGLQVV 449

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
               +VH   ++S    D+++ N+LI  Y KC  ++ A  + +E +  D VS++++I+ Y
Sbjct: 450 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 509

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G  E+A                               L L  EMQ   ++P+    S
Sbjct: 510 AQYGQGEEA-------------------------------LKLFLEMQDMELKPDRFVCS 538

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ +  ++ S  + GK++H + +K  +  +I+   ++++ YAK G +  A R F     R
Sbjct: 539 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTER 598

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W+A+I   A HG   +A+ LFN+ML  G+ P+ +T  +VL AC H+GLV +A   F
Sbjct: 599 GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYF 658

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   +G +P  EHYACM+ +L RA +I+EA E V+KMP + +A VWGALL  A I  D
Sbjct: 659 ESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKD 718

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VELG+   + LF +EPE +G ++++AN+Y+ AG+W+    VR  M++S + K PG SWIE
Sbjct: 719 VELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIE 778

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
               + +F+  D S  +S++IY  L+ L  LM + GYV + E++
Sbjct: 779 VKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEID 822



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 226/492 (45%), Gaps = 81/492 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++VSWN++ + Y Q  F  E   LF EM+ S + +P+  ++ S++ AC    D   
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGI-KPNEFSLSSMVNACTGLRDSSR 276

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++I+     D +  NAL+ MYAK G L  A ++ +++   D VS++A+I+G ++
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 121 HGFVEKAMDLFQVMKR-------------------------------------------P 137
           H   E+A++L   MKR                                            
Sbjct: 337 HEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 396

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            L  WNA+ISG  Q       L L  EM   G+  N  T+S+I    +    +   +++H
Sbjct: 397 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVH 456

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
           G +VK+ +  +IYV  ++ID+Y K   +  A+R+F+      L+ +T++I+AYA +G   
Sbjct: 457 GLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE 516

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-------------WDIF--NAMS 302
           +A+ LF EM +  ++PD    +++L+ACA+    ++               DIF  N++ 
Sbjct: 517 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 576

Query: 303 GQYGIQPSVEH---------------YACMVGVLSRARRISEATEFVSKM---PVKPSAK 344
             Y    S++                ++ M+G L++     +A +  ++M    V P+  
Sbjct: 577 NMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHI 636

Query: 345 VWGALLYGASISGDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
              ++L   + +G V   K      + LF  +P    +Y  M +L  +AG+ +EA  +  
Sbjct: 637 TLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQE-HYACMIDLLGRAGKINEAVELVN 695

Query: 402 QMKESGLAKIPG 413
           +M     A + G
Sbjct: 696 KMPFEANASVWG 707



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 32/265 (12%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S+ D+VSW+++I+GY+Q G        F EM    V + +  T  SVL+AC    D+  G
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV-KCNEFTFSSVLKACSIVKDLRIG 176

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH  V+ S  + D+++ N L+ MYAKC     ++ L DE+ +++ VS           
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVS----------- 225

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                               WNA+ S  VQ +     + L  EM  SG++PN  ++SS+ 
Sbjct: 226 --------------------WNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +   +   GK IHGY +K  YD + + A A++D YAK G L  A  VF++ K   ++
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 242 IWTAIISAYAAHGDASKAVSLFNEM 266
            W A+I+    H    +A+ L  +M
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 63/329 (19%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P  V+   +L  C  +  +  G+++H  + +S +  D  I N LI +Y+KC    YAR L
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
           +DE S+ D VS+SA+ISGY  +G    A+  F                            
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFH--------------------------- 146

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
               EM   GV+ N  T SS+    S   +L+ GK++HG  V + ++ +++VA  ++  Y
Sbjct: 147 ----EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMY 202

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           AK      ++R+FD    R+++ W A+ S Y       +AV LF EM+ +GI+P+  + +
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 280 AVLSACAHSGLVDKA---------------WDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           ++++AC  +GL D +               WD F+A          V+ YA  VG L+ A
Sbjct: 263 SMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFSA-------NALVDMYA-KVGDLADA 312

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGA 353
             + E  +       +P    W A++ G 
Sbjct: 313 ISVFEKIK-------QPDIVSWNAVIAGC 334


>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Glycine max]
          Length = 681

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 251/448 (56%), Gaps = 5/448 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D VSWN++IAGYSQ G+ E+    F EM+ + +   +  T+ SVL AC        G  
Sbjct: 215 KDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGIDFNEH-TLASVLNACSALKCSKLGKS 273

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V++     + +I + ++  Y+KCG++ YA  +  ++  K   + +++I+ Y   G 
Sbjct: 274 VHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVYAKIGIKSPFAVASLIAAYSSQGN 333

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFS 182
           + +A  LF  +       W A+ SG V++ + EAV  L RE +    + P+A+ I SI  
Sbjct: 334 MTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFREFRTKEALVPDAMIIVSILG 393

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--KGRSL 240
             +  ++L  GK+IH Y ++ R+  +  + ++++D Y+K G +  A+++F       R  
Sbjct: 394 ACAIQADLSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDA 453

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I++  II+ YA HG  +KA+ LF EMLN  ++PD VTF A+LSAC H GLV+     F +
Sbjct: 454 ILYNVIIAGYAHHGFENKAIELFQEMLNKSVKPDAVTFVALLSACRHRGLVELGEQFFMS 513

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y + P + HYACMV +  RA ++ +A EF+ K+P+K  A +WGA L    +S D  
Sbjct: 514 ME-HYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPIKIDATIWGAFLNACQMSSDAA 572

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L K   + L ++E +N   Y+ +AN Y+  G+WDE  R+R++M+     K+ G SWI   
Sbjct: 573 LVKQAEEELLKVEADNGSRYVQLANAYAAKGKWDEMGRIRKKMRGHEAKKLAGCSWIYVE 632

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLG 448
            G+  F + D S  K+E +Y  L  L G
Sbjct: 633 NGIHVFTSGDRSHSKAEAVYSTLTCLNG 660



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 202/417 (48%), Gaps = 55/417 (13%)

Query: 2   SKRDIVSWNSMIAGY-SQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           S RD+VS+NS+++ Y    G+  E   LF  M ++   +  D +T+ ++L    +   + 
Sbjct: 76  SHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNMLNLAAKLRVLC 135

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL---DEMSDKDEVSYSAIIS 116
           +G ++H++++++   +  +  ++LI MY+KCG    A  L    DEM D   VS +A+++
Sbjct: 136 YGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDL--VSKNAMVA 193

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLS---TWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
                G ++ A+++F   K P L    +WN +I+G  QN   E  L    EM  +G+  N
Sbjct: 194 ACCREGKMDMALNVF--WKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGIDFN 251

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T++S+ +  S     K GK +H + +K  Y  N ++++ ++D Y+K G +  A+ V+ 
Sbjct: 252 EHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVYA 311

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
           +   +S     ++I+AY++ G+ ++A  LF+ +L    + + V +TA+ S    S   + 
Sbjct: 312 KIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLL----ERNSVVWTALCSGYVKSQQCEA 367

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
            + +F                                 EF +K  + P A +  ++L   
Sbjct: 368 VFKLFR--------------------------------EFRTKEALVPDAMIIVSILGAC 395

Query: 354 SISGDVELGK----FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
           +I  D+ LGK    ++    F+++ +   +   + ++YS+ G    A+++   + +S
Sbjct: 396 AIQADLSLGKQIHAYILRMRFKVDKKLLSS---LVDMYSKCGNVAYAEKLFRLVTDS 449



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 117/258 (45%), Gaps = 34/258 (13%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+ V W ++ +GY +    E    LFRE      L PD + +VS+L AC   +D+  G 
Sbjct: 346 ERNSVVWTALCSGYVKSQQCEAVFKLFREFRTKEALVPDAMIIVSILGACAIQADLSLGK 405

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL--LDEMSDKDEVSYSAIISGYMV 120
           ++H +++    K+D  + ++L+ MY+KCG++ YA  L  L   SD+D + Y+ II+GY  
Sbjct: 406 QIHAYILRMRFKVDKKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAH 465

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HGF  KA++LFQ                               EM    V+P+AVT  ++
Sbjct: 466 HGFENKAIELFQ-------------------------------EMLNKSVKPDAVTFVAL 494

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-S 239
            S   H   ++ G++             IY    ++D Y +   L  A     +   +  
Sbjct: 495 LSACRHRGLVELGEQFFMSMEHYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPIKID 554

Query: 240 LIIWTAIISAYAAHGDAS 257
             IW A ++A     DA+
Sbjct: 555 ATIWGAFLNACQMSSDAA 572



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 36/258 (13%)

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   I+S +   ++ CN LI +Y+  G L  A  L DEM   +  S++AII  Y+    +
Sbjct: 6   HVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNL 65

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA-VLDLVREMQAS--GVRPNAVTISSIF 181
            +A  LF       L ++N+++S  V ++ +E   LDL   MQ++   +  + +T++++ 
Sbjct: 66  TQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNML 125

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF-------DR 234
           +L +    L  GK++H Y VK   D + +  +++ID Y+K G    A  +F       D 
Sbjct: 126 NLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDL 185

Query: 235 FKGRSLII--------------------------WTAIISAYAAHGDASKAVSLFNEMLN 268
               +++                           W  +I+ Y+ +G   K+++ F EM+ 
Sbjct: 186 VSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIE 245

Query: 269 NGIQPDPVTFTAVLSACA 286
           NGI  +  T  +VL+AC+
Sbjct: 246 NGIDFNEHTLASVLNACS 263



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S RD + +N +IAGY+  GF  +   LF+EMLN  V +PD VT V++L AC     +  G
Sbjct: 449 SDRDAILYNVIIAGYAHHGFENKAIELFQEMLNKSV-KPDAVTFVALLSACRHRGLVELG 507

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96
            +    +   ++  +++    ++ MY +   L+ A
Sbjct: 508 EQFFMSMEHYNVLPEIYHYACMVDMYGRANQLEKA 542


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 245/455 (53%), Gaps = 33/455 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD VSWNSMI  Y Q     +   LF+EM+    L  D  T+ SVL A     D+  G++
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG-LNVDMFTLASVLTAFTCLEDLSGGLQ 261

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H  +I++    +  + + LI +Y+KCG           MSD  +V              
Sbjct: 262 FHGQLIKTGFHQNSHVGSGLIDLYSKCGG---------GMSDCRKV-------------- 298

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVTISSIFS 182
                  F+ +  P L  WN ++SG  QN    E  L+  R+MQ  G RPN  +   + S
Sbjct: 299 -------FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
             S+ S+   GK+IH  A+K+    N I V  A+I  Y+K G L  A+R+FDR    + +
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTV 411

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
              ++I+ YA HG   +++ LF  ML   I P  +TF +VLSACAH+G V++ W+ FN M
Sbjct: 412 SLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMM 471

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             ++ I+P  EHY+CM+ +L RA ++SEA   +++MP  P +  W +LL      G++EL
Sbjct: 472 KEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIEL 531

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
                + + ++EP N   Y++++N+Y+ AGRW+E   VR+ M++ G+ K PG SWIE   
Sbjct: 532 AVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKK 591

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  FVA+D+S    ++IY  LE + G M+  GYV
Sbjct: 592 RIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYV 626



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 3/238 (1%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L+ C    D+  G  +H+  I+S I    +  N  I +Y+KCG L +AR    ++SD +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
             S++AII+ Y        A  LF  +  P L ++N +IS           L L   M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            G+  +  T+S++ +       L G  ++H  AV + +D  + V  A++  Y K G L  
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 228 AQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           A+RVF    G R  + W ++I AY  H + SKA+ LF EM+  G+  D  T  +VL+A
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 195/442 (44%), Gaps = 81/442 (18%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALF---REMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           D+VS+N++I+ Y+  G       LF   REM     L  DG T+ +V+ AC    D+   
Sbjct: 104 DLVSYNTLISAYADCGETAPALGLFSGMREM----GLDMDGFTLSAVITAC--CDDVGLI 157

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMV 120
            ++H+  + S     + + NAL+  Y K G LD A+ +   M   +DEVS++++I  Y  
Sbjct: 158 GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQ 217

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           H    KA+ LFQ M R GL+                                +  T++S+
Sbjct: 218 HQEGSKALGLFQEMVRRGLNV-------------------------------DMFTLASV 246

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT-GFLHGAQRVFDRFKGRS 239
            + F+   +L GG + HG  +K  + +N +V + +ID Y+K  G +   ++VF+      
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 240 LIIWTAIISAYAAHGD-ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           L++W  ++S Y+ + +    A+  F +M   G +P+  +F  V+SAC++     +   I 
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 299 ------NAMSGQYGIQPSVEHYACMVGVLSRARRISEAT--------------------- 331
                 +  S +  +  ++       G L  ARR+ +                       
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 332 -------EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYI 381
                  +++ +  + P++  + ++L   + +G VE G    + +   F IEPE   +Y 
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPE-AEHYS 485

Query: 382 IMANLYSQAGRWDEADRVREQM 403
            M +L  +AG+  EA+ +  +M
Sbjct: 486 CMIDLLGRAGKLSEAENLIARM 507



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 40/288 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQG-GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           +++ D+V WN+M++GYSQ   F E+    FR+M      RP+  + V V+ AC   S   
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQM-QGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 60  FGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            G ++H+  ++S I  + + + NALI MY+KCG+L  AR L D M++ + VS +++I+GY
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             HG   +++ LFQ M                          L R+     + P ++T  
Sbjct: 421 AQHGIEMESLHLFQWM--------------------------LERQ-----IAPTSITFI 449

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFK 236
           S+ S  +H   ++ G       +K +++        + +ID   + G L  A+ +  R  
Sbjct: 450 SVLSACAHTGRVEEGWNYFNM-MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 237 -GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
                I W +++ A   HG+   AV   N++L   ++P       VLS
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQ--LEPSNAAPYVVLS 554



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++ + VS NSMIAGY+Q G   E   LF+ ML   +  P  +T +SVL AC  +  +  
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA-PTSITFISVLSACAHTGRVEE 463

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G    N + E  +I+ +    + +I +  + G L  A  L+  M  +   + +++++   
Sbjct: 464 GWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 119 MVHGFVEKAMDLF-QVMK-RPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
             HG +E A+    QV++  P  +    V+S +  +  R E V  + + M+  GV+
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 579



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL------KGGKEIHGY 199
           IS  +Q  RH     +     ++G   +++ I S     ++FSN       K G+     
Sbjct: 4   ISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWAR 63

Query: 200 -AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
            A ++  D N++   AII  YAK      A ++FD+     L+ +  +ISAYA  G+ + 
Sbjct: 64  KAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAP 123

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACA---------HSGLVDKAWDIF----NAMSGQY 305
           A+ LF+ M   G+  D  T +AV++AC          HS  V   +D +    NA+   Y
Sbjct: 124 ALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 306 G 306
           G
Sbjct: 184 G 184


>gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 259/457 (56%), Gaps = 40/457 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KRDI  W  MI   ++ G+Y+E   +FREM N   L+ D   V S+L+A     D  F
Sbjct: 77  MPKRDISGWVVMIGACARYGYYQESLDIFREM-NKEGLKLDVFIVPSLLKASRNLLDREF 135

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++   + D +I ++LI MY+K G +  AR + D++ ++D V ++A+ISGY  
Sbjct: 136 GKMIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGYAN 195

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNA-------------------------------- 144
           +   ++A++L + MK    +P + TWNA                                
Sbjct: 196 NSQADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEEKVSEILELMCLDGYMPDVVS 255

Query: 145 ---VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
              +ISGLV N ++E   D  ++M   G+ PN+ TI+++    +  +N+K GKEIHGY+V
Sbjct: 256 WTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGYSV 315

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
               + + +V +A++D Y K GF+  A  +F +   ++ + + ++I  YA HG + KAV 
Sbjct: 316 VTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKAVE 375

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           LF++M   G + D +TFTA+L+AC+H+GL D   ++F+ M  +Y I+P +EHYACMV +L
Sbjct: 376 LFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFHLMQTKYRIEPRLEHYACMVDLL 435

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
            RA ++ EA E +  M ++P   VWGALL      G++EL +     L E+EPEN+GN +
Sbjct: 436 GRAGKLVEAYEMMKTMRMEPDLFVWGALLGACRNHGNMELARIAAKRLAELEPENSGNGL 495

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           ++ +LY+  G W+   R+++ +K+    +  G SW+E
Sbjct: 496 LLTSLYADVGSWENVIRMKKMIKKKRFRRFLGSSWVE 532



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 35/321 (10%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           V +++A  +   +  G+ +H  ++ S I     I   L+  Y +CG +  AR + DEM  
Sbjct: 20  VELIEANSRDRLLCGGIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEMPK 79

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           +D                               +S W  +I    +   ++  LD+ REM
Sbjct: 80  RD-------------------------------ISGWVVMIGACARYGYYQESLDIFREM 108

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
              G++ +   + S+     +  + + GK IH   +K  ++ + ++ +++ID Y+K G +
Sbjct: 109 NKEGLKLDVFIVPSLLKASRNLLDREFGKMIHCLVLKCSFESDAFIVSSLIDMYSKFGEV 168

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    + L+++ A+IS YA +  A +A++L  +M   GI+PD +T+ A++S  
Sbjct: 169 VNARKVFDDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDIITWNALISGF 228

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK---PS 342
           +H G  +K  +I   M    G  P V  +  ++  L    +  +A +   +M      P+
Sbjct: 229 SHMGNEEKVSEILELMCLD-GYMPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPN 287

Query: 343 AKVWGALLYGASISGDVELGK 363
           +     LL   +   +++ GK
Sbjct: 288 SATITTLLPACTTLANMKHGK 308


>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 263/453 (58%), Gaps = 4/453 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S   I SWN++I GYS      +  ++F +ML   V  PD +T   +++A  +  +   
Sbjct: 74  LSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGV-APDYLTYPFLVKASARLLNQET 132

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH  +I++  + D +I N+LI MYA CG+  +A+ + D +  K+ VS+++++ GY  
Sbjct: 133 GVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAK 192

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A   F+ M    + +W+++I G V+   +   + +  +MQ++G + N VT+ S+
Sbjct: 193 CGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSV 252

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS- 239
               +H   L+ G+ I+ Y V N     + + T+++D YAK G +  A  +F R      
Sbjct: 253 SCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQT 312

Query: 240 -LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++IW A+I   A HG   +++ LF EM   GI PD VT+  +L+ACAH GLV +AW  F
Sbjct: 313 DVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFF 372

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            ++S + G+ P+ EHYACMV VL+RA +++ A +F+ +MP +P+A + GALL G     +
Sbjct: 373 ESLS-KCGMTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLSGCINHRN 431

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           + L + V   L E+EP + G YI ++N+Y+   RWD+A  +RE M+  G+ K PG S++E
Sbjct: 432 LALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFSFVE 491

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
            SG L  F+A D +   SE+ Y +L  ++  M+
Sbjct: 492 ISGVLHRFIAHDKTHPDSEETYFMLNFVVYQMK 524



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 136/330 (41%), Gaps = 52/330 (15%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G +  +  +F  +  P + +WN +I G   +      L +  +M   GV P+ +T   + 
Sbjct: 62  GDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLV 121

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +   N + G  +H + +K  ++ + ++  ++I  YA  G    AQ+VFD  + ++++
Sbjct: 122 KASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVV 181

Query: 242 IWTAIISAYAAHGDA-------------------------------SKAVSLFNEMLNNG 270
            W +++  YA  G+                                S+A+++F +M + G
Sbjct: 182 SWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAG 241

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIF-----NAMSGQYGIQPSVEHYACMVGVLSRA- 324
            + + VT  +V  ACAH G ++K   I+     N +     +Q S+       G +  A 
Sbjct: 242 PKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEAL 301

Query: 325 ---RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKFVCDHLFEIEPENTGN 379
              RR+S++         +    +W A++ G +  G VE  L  F    +  I P+    
Sbjct: 302 LIFRRVSKS---------QTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEV-T 351

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLA 409
           Y+ +    +  G   EA    E + + G+ 
Sbjct: 352 YLCLLAACAHGGLVKEAWFFFESLSKCGMT 381



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 107/236 (45%), Gaps = 17/236 (7%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII--DTYAKTGFLHGAQRVFDRFK 236
           ++ SL     ++   K++H   +     ++    + I+     + +G ++ + RVF +  
Sbjct: 16  NLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLS 75

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-----SGLV 291
             ++  W  II  Y+   +  +++S+F +ML  G+ PD +T+  ++ A A      +G+ 
Sbjct: 76  SPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVS 135

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
             A  I         IQ S+ H     G    A+++ ++ +       + +   W ++L 
Sbjct: 136 VHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQ-------QKNVVSWNSMLD 188

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           G +  G++ + +   + + E +  +  + I   + Y +AG + EA  + E+M+ +G
Sbjct: 189 GYAKCGEMVMAQKAFESMSEKDVRSWSSLI---DGYVKAGEYSEAMAIFEKMQSAG 241


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/527 (32%), Positives = 273/527 (51%), Gaps = 72/527 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+ D V+WN MI+GY Q G  EE    F EM++S VL PD +T  S+L +  +  ++ +
Sbjct: 296 MSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVL-PDAITFSSLLPSVSKFENLEY 354

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAK-------------CGSLDYA----------- 96
             ++H +++   I +D+++ +ALI  Y K             C S+D             
Sbjct: 355 CRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLH 414

Query: 97  -----------RALLDEMSDKDEVSYSAIIS----------GYMVHGFVEK--------- 126
                      R L+      +E++  +I+           G  +HGF+ K         
Sbjct: 415 NGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNI 474

Query: 127 ----------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
                           A ++F  + +  + +WN++I+   Q++   A +D+ R+M  SG+
Sbjct: 475 GCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGI 534

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             + V+IS+  S  ++  +   GK IHG+ +K+    ++Y  + +ID YAK G L  A  
Sbjct: 535 CFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMN 594

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSG 289
           VFD  K ++++ W +II+AY  HG    ++ LF+EM+  +G +PD +TF  ++S C H G
Sbjct: 595 VFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVG 654

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
            VD+    F +M+  YGIQP  EHYAC+V +  RA R+SEA E V  MP  P A VWG L
Sbjct: 655 DVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTL 714

Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           L  + +  +VEL K     L +++P N+G Y++++N ++  G W+   +VR  MKE  + 
Sbjct: 715 LGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQ 774

Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           KIPG SWIE +     FV+ D +  +S  IY +L  LL  +R EGY+
Sbjct: 775 KIPGYSWIEINKITHLFVSGDVNHPESSHIYSLLNSLLEELRLEGYI 821



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 32/280 (11%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D V WN M+ GY++ G  +     F  ++    + P+ VT   VL  C     I  G+
Sbjct: 197 QKDCVIWNVMLNGYAKCGASDSVIKGF-SLMRMDQISPNAVTFDCVLSVCASKLLIDLGV 255

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  V+ S +  +  I N+L+ MY+KCG  D                            
Sbjct: 256 QLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFD---------------------------- 287

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
               A+ LF++M R    TWN +ISG VQ+   E  L    EM +SGV P+A+T SS+  
Sbjct: 288 ---DAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLP 344

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S F NL+  ++IH Y +++    +I++ +A+ID Y K   +  AQ++F +     +++
Sbjct: 345 SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVV 404

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           +TA+IS Y  +G    A+ +F  ++   I P+ +T  ++L
Sbjct: 405 FTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSIL 444



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 35/315 (11%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +LQ C   + +  G +VH FVI + I  D +    ++GMYA CGS      +   +  + 
Sbjct: 37  LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSR- 95

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
               S+I                     RP    WN++IS  V+       L    +M  
Sbjct: 96  ---LSSI---------------------RP----WNSIISSFVRMGLLNQALAFYFKMLC 127

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV P+  T   +        N KG + +         D N +VA+++I  Y + G +  
Sbjct: 128 FGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDV 187

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A ++FDR   +  +IW  +++ YA  G +   +  F+ M  + I P+ VTF  VLS CA 
Sbjct: 188 AGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCAS 247

Query: 288 SGLVDKAWDIFN--AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
             L+D    +     +SG    + S+++   ++ + S+  R  +A +   +M  +     
Sbjct: 248 KLLIDLGVQLHGLVVVSG-LDFEGSIKN--SLLSMYSKCGRFDDAIKLF-RMMSRADTVT 303

Query: 346 WGALLYGASISGDVE 360
           W  ++ G   SG +E
Sbjct: 304 WNCMISGYVQSGLME 318



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 125/279 (44%), Gaps = 32/279 (11%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I  WNS+I+ + + G   +  A + +ML   V  PD  T   +++AC    +   G+E  
Sbjct: 99  IRPWNSIISSFVRMGLLNQALAFYFKMLCFGV-SPDVSTFPCLVKACVALKNFK-GIEFL 156

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
           +  + S            +GM                  D +E   S++I  Y+ +G ++
Sbjct: 157 SDTVSS------------LGM------------------DCNEFVASSLIKAYLEYGKID 186

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A  LF  + +     WN +++G  +    ++V+     M+   + PNAVT   + S+ +
Sbjct: 187 VAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCA 246

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               +  G ++HG  V +  D    +  +++  Y+K G    A ++F        + W  
Sbjct: 247 SKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNC 306

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +IS Y   G   +++  F EM+++G+ PD +TF+++L +
Sbjct: 307 MISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPS 345


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 264/464 (56%), Gaps = 36/464 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           + ++D+++WN++I+GYSQ  ++E+ +AL  F EM +   +  +  T+ ++L++      +
Sbjct: 420 LPEKDLIAWNAIISGYSQ--YWEDMEALSLFVEM-HKEGIGFNQTTLSTILKSTAGLQVV 476

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
               +VH   ++S    D+++ N+LI  Y KC  ++ A  + +E +  D VS++++I+ Y
Sbjct: 477 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 536

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G  E+A                               L L  EMQ   ++P+    S
Sbjct: 537 AQYGQGEEA-------------------------------LKLFLEMQDMELKPDRFVCS 565

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ +  ++ S  + GK++H + +K  +  +I+   ++++ YAK G +  A R F     R
Sbjct: 566 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTER 625

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W+A+I   A HG   +A+ LFN+ML  G+ P+ +T  +VL AC H+GLV +A   F
Sbjct: 626 GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYF 685

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M   +G +P  EHYACM+ +L RA +I+EA E V+KMP + +A VWGALL  A I  D
Sbjct: 686 ESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKD 745

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VELG+   + LF +EPE +G ++++AN+Y+ AG+W+    VR  M++S + K PG SWIE
Sbjct: 746 VELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIE 805

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
               + +F+  D S  +S++IY  L+ L  LM + GYV + E++
Sbjct: 806 VKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEID 849



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 219/476 (46%), Gaps = 79/476 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++VSWN++ + Y Q  F  E   LF EM+ S + +P+  ++ S++ AC    D   
Sbjct: 218 IPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGI-KPNEFSLSSMVNACTGLRDSSR 276

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++I+     D +  NAL+ MYAK G L                           
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL--------------------------- 309

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A+ +F+ +K+P + +WNAVI+G V +  HE  L+L+ +M+ SG+ PN  T+SS 
Sbjct: 310 ----ADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSA 365

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +     + G+++H   +K   + +++V+  ++D Y+K   L  A+  F+    + L
Sbjct: 366 LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 425

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           I W AIIS Y+ + +  +A+SLF EM   GI  +  T + +L + A           H  
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 485

Query: 290 LVDKAW--DIF--NAMSGQYGIQPSVEHY-----ACMVG-VLSRARRISEATEF------ 333
            V   +  DI+  N++   YG    VE        C +G ++S    I+   ++      
Sbjct: 486 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 545

Query: 334 ------VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGNYIIMA 384
                 +  M +KP   V  +LL   +     E GK +  H+ +   +     GN ++  
Sbjct: 546 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV-- 603

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
           N+Y++ G  D+A R   ++ E G+      SW    GGL    A+   G ++ Q++
Sbjct: 604 NMYAKCGSIDDAGRAFSELTERGIV-----SWSAMIGGL----AQHGHGRQALQLF 650



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 148/289 (51%), Gaps = 32/289 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S+ D+VSW+++I+GY+Q G        F EM    V + +  T  SVL+AC    D+  G
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV-KCNEFTFSSVLKACSIVKDLRIG 176

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH  V+ S  + D+++ N L+ MYAKC     ++ L DE+ +++ VS++A+ S Y+  
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQI 236

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
            F  +A+ LF                                EM  SG++PN  ++SS+ 
Sbjct: 237 DFCGEAVGLFY-------------------------------EMVLSGIKPNEFSLSSMV 265

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           +  +   +   GK IHGY +K  YD + + A A++D YAK G L  A  VF++ K   ++
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
            W A+I+    H    +A+ L  +M  +GI P+  T ++ L ACA  GL
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGL 374



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 153/329 (46%), Gaps = 63/329 (19%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P  V+   +L  C  +  +  G+++H  + +S +  D  I N LI +Y+KC +  YAR L
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
           +DE S+ D VS+SA+ISGY  +G    A+  F                            
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFH--------------------------- 146

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
               EM   GV+ N  T SS+    S   +L+ GK++HG  V + ++ +++VA  ++  Y
Sbjct: 147 ----EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMY 202

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
           AK      ++R+FD    R+++ W A+ S Y       +AV LF EM+ +GI+P+  + +
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 280 AVLSACAHSGLVDKA---------------WDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           ++++AC  +GL D +               WD F+A          V+ YA  VG L+ A
Sbjct: 263 SMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFSA-------NALVDMYA-KVGDLADA 312

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGA 353
             + E  +       +P    W A++ G 
Sbjct: 313 ISVFEKIK-------QPDIVSWNAVIAGC 334


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 256/454 (56%), Gaps = 4/454 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ--SSDIVFGME 63
           IV W S +A Y + G   E  A F  M  + V  P+ +T +++L AC    S    F   
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGV-EPNHITFITLLSACADFPSESFFFASS 115

Query: 64  VHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +  +  +    + +  ALI MY+KC  L +AR +   +  K+ VS++ +++G+M +G
Sbjct: 116 LHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNG 175

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A+ LF  M      +W A+I+GL+++   E  L+   +MQ SGV  + V+I ++ +
Sbjct: 176 EIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLA 235

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L  G  +H + +   +  NI ++ ++ID Y++ G +  A++VF +   R+L+ 
Sbjct: 236 ACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVS 295

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +II  +A +G A +++  F  M   G +PD V++T  L+AC+H+GLV+K  ++F+ M 
Sbjct: 296 WNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK 355

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             + I P +EHY C+V +  RA R+ +A   + +MP+KP+  V G+LL      GDV L 
Sbjct: 356 SVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLA 415

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + +  HLF+++PE    Y++++N+Y+  G+WD A+ VR  MK  G+ K PG S +E  G 
Sbjct: 416 ERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGK 475

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  FVA D     ++ IY +L+ L   ++  GYV
Sbjct: 476 VHEFVAGDNYHADADNIYSMLDLLCHELKVCGYV 509



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 63/311 (20%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR------------------------ 39
           ++ VSWN+M+ G+ + G  E    LF EM     +                         
Sbjct: 159 KNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQM 218

Query: 40  ------PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93
                  D V++++VL AC     +  G+ VH FV+    K ++ I N+LI MY++CG +
Sbjct: 219 QRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCI 278

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
           ++AR +  +M+ +  VS+++II G+ V+GF +++++ F  M++ G        +G +   
Sbjct: 279 EFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTAC 338

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
            H  +++   E+                     F N+K   +I            I    
Sbjct: 339 SHAGLVNKGLEL---------------------FDNMKSVHKI---------TPRIEHYG 368

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
            I+D Y + G L  A  + +    + + ++  ++++A   HGD + A  L   +    + 
Sbjct: 369 CIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK--LD 426

Query: 273 PDPVTFTAVLS 283
           P+   +  +LS
Sbjct: 427 PEGDAYYVLLS 437



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 10/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+KR +VSWNS+I G++  GF +E    F  M      +PDGV+    L AC  +  +  
Sbjct: 288 MAKRTLVSWNSIIVGFAVNGFADESLEFFYAM-QKEGFKPDGVSYTGALTACSHAGLVNK 346

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+E+ + +   H    +++ + C  ++ +Y + G L+ A  +++EM  K +EV   ++++
Sbjct: 347 GLELFDNMKSVHKITPRIEHYGC--IVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLA 404

Query: 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVR 171
               HG V  A  L + + +  P    +  ++S +     + +   ++ R M+A GV+
Sbjct: 405 ACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQ 462


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 269/471 (57%), Gaps = 10/471 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  +N +I  +S G    +    + +ML S +  PD +T   +++A  +   ++ G + 
Sbjct: 81  NLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIW-PDNITFPFLIKASSEMECVLVGEQT 139

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ ++    + D+++ N+L+ MYA CG +  A  +  +M  +D VS++++++GY   G V
Sbjct: 140 HSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMV 199

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E A ++F  M    L TW+ +I+G  +NN  E  +DL   M+  GV  N   + S+ S  
Sbjct: 200 ENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSC 259

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +H   L+ G+  + Y VK+    N+ + TA++D + + G +  A  VF+       + W+
Sbjct: 260 AHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWS 319

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II   A HG A KA+  F++M++ G  P  VTFTAVLSAC+H GLV+K  +I+  M   
Sbjct: 320 SIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKD 379

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           +GI+P +EHY C+V +L RA +++EA  F+ KM VKP+A + GALL    I  + E+ + 
Sbjct: 380 HGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAER 439

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V + L +++PE++G Y++++N+Y+ AG+WD+ + +R+ MKE  + K PG S IE  G + 
Sbjct: 440 VGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKIN 499

Query: 425 SF-VAKDTSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
            F +  D    +  +I    E +LG +R  GY          +DE E+ES+
Sbjct: 500 KFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESS 550



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 41/313 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M  RD+VSW SM+AGY + G  E  + +F EM +  +                       
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237

Query: 38  --LRPDGV-----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
             ++ +GV      +VSV+ +C     + FG   + +V++SH+ ++L +  AL+ M+ +C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL----STWNAVI 146
           G ++ A  + + + + D +S+S+II G  VHG   KAM  F  M   G      T+ AV+
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357

Query: 147 SGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           S        E  L++   M+   G+ P       I  +      L    E   + +K   
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKL---AEAENFILKMHV 414

Query: 206 DRNIYVATAII---DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
             N  +  A++     Y  T        +  + K      +  + + YA  G   K  SL
Sbjct: 415 KPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESL 474

Query: 263 FNEMLNNGIQPDP 275
            + M    ++  P
Sbjct: 475 RDMMKEKLVKKPP 487



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 144/337 (42%), Gaps = 45/337 (13%)

Query: 46  VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +++LQ+C   SD+     +H F++ +H+  D+++ + L+ +     + +    LL     
Sbjct: 16  LALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLL----- 67

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                      GY        A  +F  ++ P L  +N +I                 +M
Sbjct: 68  -----------GY--------AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQM 108

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             S + P+ +T   +    S    +  G++ H   V+  +  ++YV  +++  YA  GF+
Sbjct: 109 LKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFI 168

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A R+F +   R ++ WT++++ Y   G    A  +F+EM +  +     T++ +++  
Sbjct: 169 AAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNL----FTWSIMINGY 224

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI------SEATEFVSKMPV 339
           A +   +KA D+F  M  + G+   V +   MV V+S    +        A E+V K  +
Sbjct: 225 AKNNCFEKAIDLFEFMKRE-GV---VANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280

Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
             +  +  AL+      GD+E       H+FE  PE 
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAI----HVFEGLPET 313


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 261/454 (57%), Gaps = 33/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN--SPVLRPDGVTVVSVLQACGQSSDI 58
           + +RD+VSWNS+I+G+   G  E     F +M++  +  + P+ VTV+++L++C +   +
Sbjct: 228 IEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCV 287

Query: 59  VFGMEVHNFVIESH----IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
                VH ++   H    +  D+ +  AL+ M+A+CG+L  AR + D +  K+ V +SA+
Sbjct: 288 ETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAM 347

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I+GY      E+A+ LF+ M              L++ N           M    V+PNA
Sbjct: 348 IAGYEQGSCPEEALRLFRQM--------------LMEGN-----------MVGVEVKPNA 382

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT+ S+ +  S     +    IH YAV    D++  +A+A+ID  AK G +   ++VF  
Sbjct: 383 VTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSE 442

Query: 235 F--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
                R+++ W+++I A   HG+  +A+ LF+EM   G +P+ +T+ +VLSAC+H+GLV+
Sbjct: 443 MDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVE 502

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +    FN+M   YG+ P+ +HYAC+V +L RA  + EA   +  MP+K    +WG+LL  
Sbjct: 503 QGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAA 562

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
             + G+ +LG+ V   +  ++  + G+++++AN+Y  AGRWD+  R+R +++ SGL KIP
Sbjct: 563 CHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIP 622

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           G+S+IE    + SF+A+D S  +SE IY  L+ L
Sbjct: 623 GQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGL 656



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 198/455 (43%), Gaps = 90/455 (19%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML------NSPVLRPDGVTVVSVLQACG---QS 55
           D+VSW ++I+ YS  G  +E    F  M        S     D V++ +++ AC     S
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSA 113
           + +  G  VH  V++    +   + N+++ MY+ C  +  A  + +   +  +D VS+++
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +ISG+ ++G  E+A+  F+ M   G                             S V PN
Sbjct: 239 LISGFXLNGEAERALRTFEDMVSEG----------------------------TSAVEPN 270

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-----RNIYVATAIIDTYAKTGFLHGA 228
            VT+ ++    +    ++    +H Y + +R+      +++ V TA++D +A+ G L  A
Sbjct: 271 RVTVIALLKSCAELGCVETSSWVHEY-ISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG------IQPDPVTFTAVL 282
           + +FD  +G++++ W+A+I+ Y       +A+ LF +ML  G      ++P+ VT  +V+
Sbjct: 330 REIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVI 389

Query: 283 SACAHSGL---------------VDKAWDIFNAMSGQYGIQPSVEH-------------- 313
           +AC+  G                +D+   I +A+         +EH              
Sbjct: 390 AACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRT 449

Query: 314 ---YACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCD 367
              ++ M+G          A E  S+M     +P+   + ++L   S +G VE GK   +
Sbjct: 450 VVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFN 509

Query: 368 HL---FEIEPENTGNYIIMANLYSQAGRWDEADRV 399
            +   + + P    +Y  + +L  +AG  DEA  V
Sbjct: 510 SMEKDYGMSPTGK-HYACLVDLLGRAGHLDEAHNV 543



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 143/307 (46%), Gaps = 42/307 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D   WNS+IA  +      +    F   + +  +  +  T  ++L+AC     ++ 
Sbjct: 13  ISHKDTFHWNSLIAKNATQN--PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIISGY 118
            ++VH ++    +  D +   AL+  Y KCG   YA  + DEM +   D VS++A+IS Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G V++A   F  M+   +  W+                         G     V + 
Sbjct: 131 SSNGCVDEAFXAFGRMR--WMRGWD-------------------------GSECCGVDVV 163

Query: 179 SIFSLFSHFS------NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           S+ +L S  +       L+ G  +HG  VK  +  + ++  +++  Y+    + GA RVF
Sbjct: 164 SLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVF 223

Query: 233 D--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG---IQPDPVTFTAVLSACAH 287
           +    + R ++ W ++IS +  +G+A +A+  F +M++ G   ++P+ VT  A+L +CA 
Sbjct: 224 NGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAE 283

Query: 288 SGLVDKA 294
            G V+ +
Sbjct: 284 LGCVETS 290



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 15/232 (6%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN++I+     N   A+    R MQA  V  N  T  ++    +    L    ++H Y  
Sbjct: 21  WNSLIAKNATQNPQTALTFFTR-MQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLT 79

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS--LIIWTAIISAYAAHGDASKA 259
           +     + + A A++D Y K G  + A +VFD     S  ++ WTA+ISAY+++G   +A
Sbjct: 80  RLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEA 139

Query: 260 VSLFNEML-------NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG---QYGIQP 309
              F  M        +     D V+  A++SACA  G         +A+ G   +YG   
Sbjct: 140 FXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVHGLVVKYGFGV 198

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV-WGALLYGASISGDVE 360
           S      MV + S  + +  A    + +P++    V W +L+ G  ++G+ E
Sbjct: 199 STHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 249/456 (54%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN++IA + Q G  E+  +LF  ML S  + PD  T  SVL+AC     +  
Sbjct: 437 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG-MEPDEFTYGSVLKACAGWQALNC 495

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+HN +I+S + +D ++  ALI MY+KCG ++ A  L D ++++  V           
Sbjct: 496 GMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV----------- 544

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               +WNA+ISG     + E       +M   GV P+  T ++I
Sbjct: 545 --------------------SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI 584

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++   ++ GK+IH   +K     + Y+++ ++D Y+K G +   Q +F++   R  
Sbjct: 585 LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF 644

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A++  YA HG   +A+ +F  M    ++P+  TF AVL AC H GLV+K    F++
Sbjct: 645 VTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHS 704

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY+C+V ++ R+ ++S+A E +  MP +  A +W  LL    I G+VE
Sbjct: 705 MLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVE 764

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +     + ++EPE++  Y++++N+Y+ AG W+E  ++R+ M+ +GL K PG SWIE  
Sbjct: 765 VAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIK 824

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F+  D +  +S++IY  L+ L   M+  GY+
Sbjct: 825 SEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYM 860



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNS+I+GY   G + +   +F +M     +  D  T   VL++C    D   
Sbjct: 134 MPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF-DRTTFAVVLKSCSSLEDHGG 192

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H   ++     D+   +AL+ MYAKC  LD +      M +K+ VS          
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVS---------- 242

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+I+G VQN+     L+L +EMQ +GV  +  T +S+
Sbjct: 243 ---------------------WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASV 281

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S L+ G ++HG+A+K  +  ++ + TA +D Y K   L  AQ++F+     +L
Sbjct: 282 FRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNL 341

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             + AII  YA      +A+ +F  +  +G+  D V+ +    ACA
Sbjct: 342 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA 387



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T   + Q C     +  G + H  +I +  K  +++ N LI MY KC  L++A  + D M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
             +D VS++A++ GY   G +  A  LF  M    + +WN++ISG + N  H  V+D+  
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           +M   G   +  T + +    S   +  GG +IHG AVK  +D ++   +A++D YAK  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L  + + F     ++ + W+AII+    + D    + LF EM   G+     TF +V  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 284 ACA 286
           +CA
Sbjct: 284 SCA 286



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 196/414 (47%), Gaps = 48/414 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV---TVVSVLQACGQSSD 57
           M +++ VSW+++IAG  Q         LF+EM  + V    GV   T  SV ++C   S 
Sbjct: 235 MPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGV----GVSQSTFASVFRSCAGLSA 290

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +  G ++H   +++    D+ I  A + MY KC +L  A+ L + + + +          
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN---------- 340

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                L ++NA+I G  ++++    L + R +Q SG+  + V++
Sbjct: 341 ---------------------LQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 379

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S  F   +       G ++HG ++K+    NI VA AI+D Y K G L  A  VF+    
Sbjct: 380 SGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVS 439

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R  + W AII+A+  +G+  K +SLF  ML +G++PD  T+ +VL ACA    ++   +I
Sbjct: 440 RDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEI 499

Query: 298 FN-AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            N  +  + G+   V     ++ + S+   + +A +   ++  + +   W A++ G S+ 
Sbjct: 500 HNRIIKSRLGLDSFVG--IALIDMYSKCGMMEKAEKLHDRL-AEQTVVSWNAIISGFSLQ 556

Query: 357 GDVELGKFVCDHLFE--IEPENTGNYIIM---ANLYS-QAGRWDEADRVREQMK 404
              E  +     + E  ++P+N     I+   ANL + + G+   A  ++++++
Sbjct: 557 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQ 610


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 250/473 (52%), Gaps = 53/473 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN+M++G S+ G  EE K +F                               
Sbjct: 106 MPVRDVASWNTMVSGLSKSGAVEEAKVVF------------------------------L 135

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
            M V N V         W  NA++  +A  G +  A        +K D V ++A++SGYM
Sbjct: 136 AMPVRNSVS--------W--NAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYM 185

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G V KA+  F+ M    L +WNAV++G V+N+  +  L L R M + + V+PNA T+S
Sbjct: 186 DIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 245

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    S+ S L  GK+IH + +K    RN+ V T+++  Y K G L  A  +F     R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR 305

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+IS YA HGD  +A++LF  M + G++P+ +TF  VL+AC H+GL D     F
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCF 365

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   YGI+P V+HY+CMV +L RA ++  A +F+  MP +P    +G LL    +  +
Sbjct: 366 EGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKN 425

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E  +     L E +P++ G Y+ +AN+Y+ A +WD+  RVR  MK++ + K PG SWIE
Sbjct: 426 LEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIE 485

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGL---MREEGYV-----LLDEVEE 463
             G L  F + D       Q+YLI E+L  L   M+E GYV     +L +V+E
Sbjct: 486 IKGVLHEFRSNDR---LHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDE 535



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 154/361 (42%), Gaps = 62/361 (17%)

Query: 81  NALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           N L+  YA+  G L  AR L D +   D VSY+ ++  +   G  + A  LF  M    +
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDV 111

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
           ++WN ++SGL ++    AV +      A  VR N+V+ +++ S F+   ++   +E    
Sbjct: 112 ASWNTMVSGLSKSG---AVEEAKVVFLAMPVR-NSVSWNAMVSGFACSGDMSTAEEWFRN 167

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           A +     +  + TA++  Y   G +  A + F+    R+L+ W A+++ Y  +  A  A
Sbjct: 168 APEK---EDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 260 VSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           + LF  M+    +QP+  T ++VL  C+            N  +  +G Q    H  CM 
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCS------------NLSALGFGKQI---HQWCMK 269

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
            +LS  R ++  T  VS M  K        +L+G                  E+   +  
Sbjct: 270 LLLS--RNLTVGTSLVS-MYCKCGDLSSACILFG------------------EMHTRDVV 308

Query: 379 NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE-------------CSGGLQS 425
            +  M + Y+Q G   EA  + E+MK+ G+      +WI              C  G+Q 
Sbjct: 309 AWNAMISGYAQHGDGKEAINLFERMKDEGVEP----NWITFVVVLTACIHTGLCDFGIQC 364

Query: 426 F 426
           F
Sbjct: 365 F 365



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
           +A ++  + HG +  A + F    R   +T+N +++G     R    L   R +      
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYA---RAPGRLADARHLFDRIPT 77

Query: 172 PNAVTISSIFSLFSHFS--NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           P+ V+ +++  L  HF+  +  G + +      +   R++     ++   +K+G +  A+
Sbjct: 78  PDVVSYNTL--LLCHFASGDADGARRLFA----SMPVRDVASWNTMVSGLSKSGAVEEAK 131

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            VF     R+ + W A++S +A  GD S A   F    N   + D V +TA++S     G
Sbjct: 132 VVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFR---NAPEKEDAVLWTAMVSGYMDIG 188

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVW 346
            V KA   F AM     ++  V   A + G +  +        F   V +  V+P+A   
Sbjct: 189 NVVKAIKYFEAMP----VRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTL 244

Query: 347 GALLYGASISGDVELGK 363
            ++L G S    +  GK
Sbjct: 245 SSVLLGCSNLSALGFGK 261



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA-AHGDASKAVSLFNEMLNN 269
           ++TA +    + G L GA+  F     ++   +  +++ YA A G  + A  LF+ +   
Sbjct: 19  LSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPT- 77

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
              PD V++  +L     SG  D A  +F +M  +      V  +  MV  LS++  + E
Sbjct: 78  ---PDVVSYNTLLLCHFASGDADGARRLFASMPVR-----DVASWNTMVSGLSKSGAVEE 129

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           A      MPV+ S   W A++ G + SGD+
Sbjct: 130 AKVVFLAMPVRNSVS-WNAMVSGFACSGDM 158


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 252/473 (53%), Gaps = 53/473 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN+M++G S+ G  EE KA+F                               
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVF------------------------------L 184

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
            M V N V         W  NA++  +A    +  A        +K D V ++A++SGYM
Sbjct: 185 AMPVRNSVS--------W--NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYM 234

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G V KA++ F+ M    L +WNAV++G V+N+  +  L L R M + + V+PNA T+S
Sbjct: 235 DIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 294

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    S+ S L  GK+IH + +K    RN+ V T+++  Y K G L  A ++F     R
Sbjct: 295 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 354

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+IS YA HGD  +A++LF  M + G++P+ +TF AVL+AC H+GL D     F
Sbjct: 355 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCF 414

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   YGI+P V+HY+CMV +L RA ++  A + +  MP +P    +G LL    +  +
Sbjct: 415 EGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKN 474

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E  +     L E +P++ G Y+ +AN+Y+ A +WD+  RVR  MK++ + K PG SWIE
Sbjct: 475 LEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIE 534

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGL---MREEGYV-----LLDEVEE 463
             G +  F + D       Q+YLI E+L  L   M+  GYV     +L +V+E
Sbjct: 535 IKGVMHEFRSNDR---LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDE 584



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 34/339 (10%)

Query: 81  NALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           N L+  YA+  G L  AR L D +   D VSY+ ++S +   G  + A  LF  M    +
Sbjct: 101 NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 160

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            +WN ++SGL ++    AV +      A  VR N+V+ +++ S F+   ++   +E    
Sbjct: 161 VSWNTMVSGLSKSG---AVEEAKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEW--- 213

Query: 200 AVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
             +N  ++ +  + TA++  Y   G +  A   F+    R+L+ W A+++ Y  +  A  
Sbjct: 214 -FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADD 272

Query: 259 AVSLFNEMLNNG-IQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVE 312
           A+ LF  M+    +QP+  T ++VL  C++      G     W +   +S    +  S+ 
Sbjct: 273 ALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV 332

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE- 371
              C  G L      S A +   +M  +     W A++ G +  GD   GK   + LFE 
Sbjct: 333 SMYCKCGDL------SSACKLFGEMHTR-DVVAWNAMISGYAQHGD---GKEAIN-LFER 381

Query: 372 -----IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
                +EP N   ++ +       G  D   R  E M+E
Sbjct: 382 MKDEGVEP-NWITFVAVLTACIHTGLCDFGIRCFEGMQE 419


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 252/473 (53%), Gaps = 53/473 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN+M++G S+ G  EE KA+F                               
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVF------------------------------L 135

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
            M V N V         W  NA++  +A    +  A        +K D V ++A++SGYM
Sbjct: 136 AMPVRNSVS--------W--NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYM 185

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G V KA++ F+ M    L +WNAV++G V+N+  +  L L R M + + V+PNA T+S
Sbjct: 186 DIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 245

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    S+ S L  GK+IH + +K    RN+ V T+++  Y K G L  A ++F     R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+IS YA HGD  +A++LF  M + G++P+ +TF AVL+AC H+GL D     F
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCF 365

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   YGI+P V+HY+CMV +L RA ++  A + +  MP +P    +G LL    +  +
Sbjct: 366 EGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKN 425

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E  +     L E +P++ G Y+ +AN+Y+ A +WD+  RVR  MK++ + K PG SWIE
Sbjct: 426 LEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIE 485

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGL---MREEGYV-----LLDEVEE 463
             G +  F + D       Q+YLI E+L  L   M+  GYV     +L +V+E
Sbjct: 486 IKGVMHEFRSNDR---LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDE 535



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 148/338 (43%), Gaps = 32/338 (9%)

Query: 81  NALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           N L+  YA+  G L  AR L D +   D VSY+ ++S +   G  + A  LF  M    +
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 111

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            +WN ++SGL ++    AV +      A  VR N+V+ +++ S F+   ++   +E    
Sbjct: 112 VSWNTMVSGLSKSG---AVEEAKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEWFRN 167

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           A +     +  + TA++  Y   G +  A   F+    R+L+ W A+++ Y  +  A  A
Sbjct: 168 APEK---GDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 260 VSLFNEMLNNG-IQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVEH 313
           + LF  M+    +QP+  T ++VL  C++      G     W +   +S    +  S+  
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE-- 371
             C  G L      S A +   +M  +     W A++ G +  GD   GK   + LFE  
Sbjct: 285 MYCKCGDL------SSACKLFGEMHTR-DVVAWNAMISGYAQHGD---GKEAIN-LFERM 333

Query: 372 ----IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
               +EP N   ++ +       G  D   R  E M+E
Sbjct: 334 KDEGVEP-NWITFVAVLTACIHTGLCDFGIRCFEGMQE 370


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 251/462 (54%), Gaps = 39/462 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           R +VSWNSMIA Y+   F +  KA+  ++ ML+     PD  T++++L +C Q   +  G
Sbjct: 220 RSVVSWNSMIAAYAN--FEKHVKAVNCYKGMLDGG-FSPDISTILNLLSSCMQPKALFHG 276

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           + VH+  ++     D+ + N LI MY+KCG +  AR L + MSDK  VS++ +IS Y   
Sbjct: 277 LLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEK 336

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G++ +AM LF                                 M+A+G +P+ VT+ ++ 
Sbjct: 337 GYMSEAMTLFNA-------------------------------MEAAGEKPDLVTVLALI 365

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S       L+ GK I  Y++ N    N+ V  A+ID YAK G  + A+ +F     R+++
Sbjct: 366 SGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVV 425

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT +I+A A +GD   A+ LF  ML  G++P+ +TF AVL ACAH GLV++  + FN M
Sbjct: 426 SWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMM 485

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           + +YGI P ++HY+CMV +L R   + EA E +  MP +P + +W ALL    + G +E+
Sbjct: 486 TQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEM 545

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           GK+V + LFE+EP+    Y+ MAN+Y+ A  W+    +R  MK   + K PG+S I+ +G
Sbjct: 546 GKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNG 605

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
               F  +D   D  E +Y I + L GL       LL   EE
Sbjct: 606 KPTIFTVEDR--DHPETLY-IYDMLDGLTSRSKKGLLAYSEE 644



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 32/360 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDI SWN+M+ G++Q GF +    L R M  S + RPD VTV+ ++ +  +   +  
Sbjct: 114 MPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGI-RPDAVTVLLLIDSILRVKSLTS 172

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              V++F I   + MD+ + N LI  Y+KCG+L  A  L DE++        +++S    
Sbjct: 173 LGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINS----GLRSVVS---- 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+      +H   ++  + M   G  P+  TI ++
Sbjct: 225 ---------------------WNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNL 263

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S       L  G  +H + VK   D ++ V   +I  Y+K G +H A+ +F+    ++ 
Sbjct: 264 LSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTC 323

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +ISAYA  G  S+A++LFN M   G +PD VT  A++S C  +G ++    I N 
Sbjct: 324 VSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDN- 382

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            S   G++ +V     ++ + ++    ++A E    M  +     W  ++   +++GDV+
Sbjct: 383 YSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMITACALNGDVK 441



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 189/441 (42%), Gaps = 82/441 (18%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           + +WNS        G  +    LFR+M  S +  P+  T   VL+AC + S +     +H
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGI-TPNNSTFPFVLKACAKLSHLRNSQIIH 76

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V++S  + ++++  A + MY KCG L+ A  +  EM  +D                  
Sbjct: 77  AHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRD------------------ 118

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
                        +++WNA++ G  Q+   + +  L+R M+ SG+RP+AVT+  +     
Sbjct: 119 -------------IASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSIL 165

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIW 243
              +L     ++ + ++     ++ VA  +I  Y+K G L  A+ +FD      RS++ W
Sbjct: 166 RVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSW 225

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-----------AHS---- 288
            ++I+AYA      KAV+ +  ML+ G  PD  T   +LS+C            HS    
Sbjct: 226 NSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVK 285

Query: 289 --------------------GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                               G V  A  +FN MS +  +  +V     M+   +    +S
Sbjct: 286 LGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTV-----MISAYAEKGYMS 340

Query: 329 EATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII--- 382
           EA    + M     KP      AL+ G   +G +ELGK++ +  + I      N ++   
Sbjct: 341 EAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDN--YSINNGLKDNVVVCNA 398

Query: 383 MANLYSQAGRWDEADRVREQM 403
           + ++Y++ G +++A  +   M
Sbjct: 399 LIDMYAKCGGFNDAKELFYTM 419



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R +VSW +MI   +  G  ++   LF  ML    ++P+ +T ++VLQAC     +  
Sbjct: 419 MANRTVVSWTTMITACALNGDVKDALELFFMMLEMG-MKPNHITFLAVLQACAHGGLVER 477

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+E  N + + +     +D + C  ++ +  + G L  A  ++  M  + D   +SA++S
Sbjct: 478 GLECFNMMTQKYGINPGIDHYSC--MVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLS 535

Query: 117 GYMVHGFVE 125
              +HG +E
Sbjct: 536 ACKLHGKME 544



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           G     +RF   +L  W +        G A  A+ LF +M  +GI P+  TF  VL ACA
Sbjct: 7   GVTPCINRFS--TLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACA 64

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
               +  +  I +A   +   Q ++      V +  +  R+ +A     +MPV+  A  W
Sbjct: 65  KLSHLRNS-QIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIAS-W 122

Query: 347 GALLYGASISG 357
            A+L G + SG
Sbjct: 123 NAMLLGFAQSG 133


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 250/465 (53%), Gaps = 37/465 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+WN+M++GY+Q     +   LF  +++    R D  T+ +VL+ CG    I  G +V
Sbjct: 488 DLVAWNAMMSGYTQSHDGHKTLELF-ALMHKQGERSDDFTLATVLKTCGFLFAINQGKQV 546

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + I+S   +DLW+ + ++ MY KCG +  A+   D +   D+V+              
Sbjct: 547 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA-------------- 592

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            W  +ISG ++N   E  L +  +M+  GV P+  TI+++    
Sbjct: 593 -----------------WTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKAS 635

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S  + L+ G++IH  A+K     + +V T+++D YAK G +  A  +F R +  ++  W 
Sbjct: 636 SCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 695

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++   A HG+  +A+ LF +M + GI+PD VTF  VLSAC+HSGLV +A+    +M   
Sbjct: 696 AMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRD 755

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI+P +EHY+C+   L RA  + EA   +  M ++ SA ++  LL    + GD E GK 
Sbjct: 756 YGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKR 815

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L E+EP ++  Y++++N+Y+ A +WDE    R  MK   + K PG SWIE    + 
Sbjct: 816 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 875

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            FV  D S  ++E IY  ++ ++  +++EGYV      L +VEEE
Sbjct: 876 LFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEE 920



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 149/327 (45%), Gaps = 44/327 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQG--GFYEECKA---LFREMLNSPVLRPDGVTVVSVLQACGQS 55
           M +RD+VSWNS++A Y+Q   G  E  K    LFR +L   V+    +T+  +L+ C  S
Sbjct: 107 MPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFR-ILRQDVVYTSRMTLSPMLKLCLHS 165

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
             +      H +  +  +  D ++  AL+ +Y K G +   R L +EM  +D V ++ ++
Sbjct: 166 GYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLML 225

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLS----------------------------------- 140
             Y+  GF E+A+DL       GL                                    
Sbjct: 226 KAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVS 285

Query: 141 ---TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
              + N ++SG +   ++ A+L    +M  S +  + VT   + +      +L  G+++H
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
             A+K   D  + V+ ++I+ Y K   +  A+ VF+    R LI W ++I+  A      
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEV 405

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +AV LF ++L  G++PD  T T+VL A
Sbjct: 406 EAVCLFMQLLRCGLKPDHYTMTSVLKA 432



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 158/357 (44%), Gaps = 36/357 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I+S N +++GY   G Y      F +M+ S  L  D VT + VL    +   +  G +V
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESD-LECDQVTFILVLATAVRLDSLALGQQV 344

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   ++  + + L + N+LI MY K   +  AR + + MS++D +S++++I+G       
Sbjct: 345 HCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLE 404

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+ LF  + R GL                               +P+  T++S+    
Sbjct: 405 VEAVCLFMQLLRCGL-------------------------------KPDHYTMTSVLKAA 433

Query: 185 SHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           S     L   K+IH +A+K     + +V+TA+ID Y++   +  A+ +F R     L+ W
Sbjct: 434 SSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAW 492

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A++S Y    D  K + LF  M   G + D  T   VL  C     +++   + +A + 
Sbjct: 493 NAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQV-HAYAI 551

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           + G    +   + ++ +  +   +S A      +PV P    W  L+ G   +G+ E
Sbjct: 552 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEE 607



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 26/224 (11%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           +SD++ G   H  ++      + ++ N LI MY+KCGSL YAR + D+M ++D VS+++I
Sbjct: 59  TSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           ++ Y                             G+V+N + EA L L R ++   V  + 
Sbjct: 119 LAAYAQSS------------------------EGVVENVK-EAFL-LFRILRQDVVYTSR 152

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           +T+S +  L  H   +   +  HGYA K   D + +VA A+++ Y K G +   + +F+ 
Sbjct: 153 MTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEE 212

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
              R +++W  ++ AY   G   +A+ L +    +G+ P+ +T 
Sbjct: 213 MPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 250/456 (54%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + DIV +NSM  GYS+     +  +LF + LN  +L PD  T  S+L+AC  +     
Sbjct: 87  IPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLL-PDDYTFPSLLKACVVAKAFQQ 145

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   I+  +  + ++C  LI MYA C  +D A+ + DE+ +               
Sbjct: 146 GKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILE--------------- 190

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                           P + ++NA+I+G  +++R    L L R++QA  ++PN VT+ S+
Sbjct: 191 ----------------PCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSV 234

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  GK IH Y  KN  D+ + V TA+ID YAK G L GA  VF+    R  
Sbjct: 235 LSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDT 294

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W+A+I AYA HG     +S+F EM    +QPD +TF  +L AC+H+GLVD+ +  F +
Sbjct: 295 QAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYS 354

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  YGI P ++HY CMV +L RA  + EA +F+ ++P+KP+  +W  LL   S  G++E
Sbjct: 355 MSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLE 414

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L K V + + E++  + G+Y+I++NL ++AG+W++ D +R+ M   G  KIPG S IE  
Sbjct: 415 LAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVD 474

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F + D     S  ++  L+ L+  ++  GYV
Sbjct: 475 NVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYV 510



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 41/318 (12%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK---CGSLDYARALL 100
           +++S L  C    ++    ++  F I++H++ DL I   LI    +     S+DYA  L 
Sbjct: 28  SLLSCLPKCTSLKEL---KQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLF 84

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           + +   D V ++++  GY       KA+ LF              I  L  N        
Sbjct: 85  EAIPQPDIVLFNSMFRGYSRSNAPLKAISLF--------------IKALNYN-------- 122

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
                    + P+  T  S+          + GK++H  A+K   + N YV   +I+ YA
Sbjct: 123 ---------LLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYA 173

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
               + GAQRVFD      ++ + AII+ YA     ++A+SLF ++    ++P+ VT  +
Sbjct: 174 GCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLS 233

Query: 281 VLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
           VLS+CA  G +D   W   +    + G+   V+    ++ + ++   +  A      M V
Sbjct: 234 VLSSCALLGALDLGKW--IHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSV 291

Query: 340 KPSAKVWGALLYGASISG 357
           +   + W A++   ++ G
Sbjct: 292 R-DTQAWSAMIVAYAMHG 308



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 118/276 (42%), Gaps = 53/276 (19%)

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK---TGFLHGAQ 229
           N    SS+ S     ++LK  K+I  +++K     ++ + T +I++  +   T  +  A 
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC---- 285
           ++F+      ++++ ++   Y+      KA+SLF + LN  + PD  TF ++L AC    
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 286 -------------------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
                                          A    VD A  +F+ +     ++P V  Y
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEI-----LEPCVVSY 196

Query: 315 ACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
             ++   +R+ R +EA     ++    +KP+     ++L   ++ G ++LGK++ ++   
Sbjct: 197 NAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEY--- 253

Query: 372 IEPENTGNYI----IMANLYSQAGRWDEADRVREQM 403
           ++      Y+     + ++Y++ G  D A  V E M
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESM 289


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 249/456 (54%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++ R++ +WN+MI G +Q     E  +LF +M       PD  T V++L A      + +
Sbjct: 396 LAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFF-PDATTFVNILSANVGEEALEW 454

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH++ I++ + +DL + NAL+ MYAKCG+  YA+ + D+M +++             
Sbjct: 455 VKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERN------------- 500

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             ++TW  +ISGL Q+        L  +M   G+ P+A T  SI
Sbjct: 501 ------------------VTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSI 542

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+  KE+H +AV      ++ V  A++  YAK G +  A+RVFD    R +
Sbjct: 543 LSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDV 602

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT +I   A HG    A+ LF +M   G +P+  +F AVLSAC+H+GLVD+    F +
Sbjct: 603 YSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLS 662

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           ++  YGI+P++EHY CMV +L RA ++ EA  F+  MP++P    WGALL      G++E
Sbjct: 663 LTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLE 722

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +F      +++P++   Y++++N+Y+  G W++   VR  M+  G+ K PGRSWIE  
Sbjct: 723 MAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVD 782

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + SFV  DTS  +S++IY  L+ L+  ++ EGYV
Sbjct: 783 NQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYV 818



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 196/432 (45%), Gaps = 70/432 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN+MI G +Q G   E   +F +M     + PD  T +S+L     +    +
Sbjct: 295 MCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV-PDSTTYLSLLNTHVSTGAWEW 353

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH   +E  +  DL + +A + MY +CGS+D A+ + D+++ ++  +++A+I G   
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQ 413

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                +A+ LF  M+R G                                 P+A T  +I
Sbjct: 414 QKCGREALSLFLQMRREGFF-------------------------------PDATTFVNI 442

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S       L+  KE+H YA+      ++ V  A++  YAK G    A++VFD    R++
Sbjct: 443 LSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNV 501

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-- 298
             WT +IS  A HG   +A SLF +ML  GI PD  T+ ++LSACA +G ++   ++   
Sbjct: 502 TTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSH 561

Query: 299 -------------NAMSGQYG---------------IQPSVEHYACMVGVLSRARRISEA 330
                        NA+   Y                ++  V  +  M+G L++  R  +A
Sbjct: 562 AVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDA 621

Query: 331 TEFVSKMPV---KPSAKVWGALLYGASISGDVELGK---FVCDHLFEIEPENTGNYIIMA 384
            +   KM +   KP+   + A+L   S +G V+ G+         + IEP    +Y  M 
Sbjct: 622 LDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEP-TMEHYTCMV 680

Query: 385 NLYSQAGRWDEA 396
           +L  +AG+ +EA
Sbjct: 681 DLLGRAGQLEEA 692



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 200/462 (43%), Gaps = 80/462 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--I 58
           M +RDI SW  MI G +Q G  +E  +LF +M     L P+  T +S+L A   +S   +
Sbjct: 192 MVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL-PNLTTYLSILNASAITSTGAL 250

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            +  EVH    ++    DL + NALI MYAKCGS+D AR + D M D+D +S++A+I G 
Sbjct: 251 EWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG- 309

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                         L QN        +  +MQ  G  P++ T  
Sbjct: 310 ------------------------------LAQNGCGHEAFTIFLKMQQEGFVPDSTTYL 339

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ +        +  KE+H +AV+     ++ V +A +  Y + G +  AQ +FD+   R
Sbjct: 340 SLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR 399

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-----------AH 287
           ++  W A+I   A      +A+SLF +M   G  PD  TF  +LSA             H
Sbjct: 400 NVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVH 459

Query: 288 S-----GLVDKAWDIFNAMSGQYG---------------IQPSVEHYACMVGVLSRARRI 327
           S     GLVD    + NA+   Y                ++ +V  +  M+  L++    
Sbjct: 460 SYAIDAGLVD--LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCG 517

Query: 328 SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGNYI 381
            EA     +M    + P A  + ++L   + +G +E  K V  H      +     GN +
Sbjct: 518 HEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNAL 577

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  ++Y++ G  D+A RV + M E  +      SW    GGL
Sbjct: 578 V--HMYAKCGSVDDARRVFDDMLERDV-----YSWTVMIGGL 612



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 181/407 (44%), Gaps = 51/407 (12%)

Query: 12  MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES 71
           MI GY++ G+ E+   ++ +M      +P+ +T +S+L+AC     + +G ++H  +I+S
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKIHAHIIQS 59

Query: 72  HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131
             + D+ +  AL+ MY KCGS+D A+ + D+M +++ +S                     
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVIS--------------------- 98

Query: 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
                     W  +I GL    R +       +MQ  G  PN+ T  SI +  +    L+
Sbjct: 99  ----------WTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALE 148

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
             KE+H +AV      ++ V  A++  YAK+G +  A+ VFD    R +  WT +I   A
Sbjct: 149 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLA 208

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW-DIFNAMSGQYGIQPS 310
            HG   +A SLF +M   G  P+  T+ ++L+A A +      W    +  +G+ G    
Sbjct: 209 QHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISD 268

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH-- 368
           +     ++ + ++   I +A      M  +     W A++ G + +G        C H  
Sbjct: 269 LRVGNALIHMYAKCGSIDDARLVFDGMCDRDVIS-WNAMIGGLAQNG--------CGHEA 319

Query: 369 ---LFEIEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
                +++ E    ++  Y+ + N +   G W+    V +   E GL
Sbjct: 320 FTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGL 366



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 158/350 (45%), Gaps = 56/350 (16%)

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           +I G  +    E  + +  +M+  G +PN +T  SI        +LK GK+IH + +++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
           +  ++ V TA+++ Y K G +  AQ +FD+   R++I WT +I   A +G   +A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF---------------NAMSGQYGIQP 309
           +M   G  P+  T+ ++L+A A +G ++   ++                NA+   Y    
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 310 SVE---------------HYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLY 351
           S++                +  M+G L++  R  EA     +M      P+   + ++L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 352 GASI--SGDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
            ++I  +G +E  K V  H  +   I     GN +I  ++Y++ G  D+A  V + M + 
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALI--HMYAKCGSIDDARLVFDGMCDR 298

Query: 407 GLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +      SW    GGL    A++  G ++  I+L        M++EG+V
Sbjct: 299 DVI-----SWNAMIGGL----AQNGCGHEAFTIFL-------KMQQEGFV 332


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 259/451 (57%), Gaps = 38/451 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+VSWN+MI+G+ Q G  EE   L  EM     +  D VTV S+L A     +   
Sbjct: 265 MPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFI-ADSVTVTSLLSAASNLRNREI 323

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL--DEMSDKDEVSYSAIISGY 118
           G + H ++I   IK D  + + LI MYAK G +  ++ +   + + ++D+ +++A+I+GY
Sbjct: 324 GKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGY 382

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
             +G VE+A   F++M              L QN                 +RPNAVT++
Sbjct: 383 TQNGLVEQAFITFRLM--------------LEQN-----------------LRPNAVTLA 411

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    S   ++  GK++HG +++   D+NI+V TA++D Y+K+G ++ A+ VF +   R
Sbjct: 412 SILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSER 471

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + + +T +I  Y  HG    A+SLF+ M  +GIQPD +TF AVLSAC+++GLVD+   IF
Sbjct: 472 NSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIF 531

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISG 357
            +M   + IQPS  HY C+  +L R  R+ EA EFV ++  +    ++WG+LL    + G
Sbjct: 532 ESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHG 591

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            +ELG+ V + L E+   +   G  ++++N+Y++   W+  D++R+ M+E GL K  G S
Sbjct: 592 HIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGCS 651

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           WI+  G L  FV+KD    + E+IY +LERL
Sbjct: 652 WIDTGGLLVRFVSKDKDHTRCEEIYEMLERL 682



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 206/440 (46%), Gaps = 77/440 (17%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI G+ Q   + E   LF + + +     D VT +S L A  Q   +  G ++H F 
Sbjct: 171 WNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFT 230

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           +++H  + + + NA++ MY++C S+  +  + ++M +KD VS++ +ISG+          
Sbjct: 231 MKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGF---------- 280

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                                +QN   E  L LV EMQ  G   ++VT++S+ S  S+  
Sbjct: 281 ---------------------IQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLR 319

Query: 189 NLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFLHGAQRVF--DRFKGRSLIIWT 244
           N + GK+ H Y +++  ++D    + + +ID YAK+G +  +QRVF  +  + R    W 
Sbjct: 320 NREIGKQTHAYLIRHGIKFDG---MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWN 376

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+I+ Y  +G   +A   F  ML   ++P+ VT  ++L AC+  G ++    + + +S +
Sbjct: 377 AVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQL-HGVSIR 435

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVS----------------------------- 335
           Y +  ++     +V + S++  I+ A    +                             
Sbjct: 436 YSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSL 495

Query: 336 -----KMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLY 387
                K  ++P A  + A+L   S +G V+ G  + + +   F+I+P +T +Y  +A++ 
Sbjct: 496 FHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQP-STAHYCCVADML 554

Query: 388 SQAGRWDEADRVREQMKESG 407
            + GR  EA    +Q+ E G
Sbjct: 555 GRVGRVIEAYEFVKQLGEEG 574



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 138/293 (47%), Gaps = 41/293 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACG-----QS 55
           M KRD+++WN+M++ Y +   Y E    FR M+   + +P  V+ V+V  A       ++
Sbjct: 60  MHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGI-KPSPVSFVNVFPAISSVGDFKN 118

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +++++GM +    + +    DL++ ++ I MYA+ G LD  R + D              
Sbjct: 119 ANVLYGMLLK---LGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSC------------ 163

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNA 174
                   +EK+ ++           WN +I G +QNN   E V   ++ M+      + 
Sbjct: 164 --------LEKSAEV-----------WNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDD 204

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT  S  +  S    L  G+++H + +KN    ++ V  AI+  Y++   +  +  VF++
Sbjct: 205 VTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEK 264

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
              + ++ W  +IS +  +G   + + L  EM   G   D VT T++LSA ++
Sbjct: 265 MPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASN 317



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 5/226 (2%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +F+ M +  +  WN ++S  V+  R+   +   R M   G++P+ V+  ++F   S   +
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGD 115

Query: 190 LKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            K    ++G  +K  N Y  +++V ++ I  YA+ G L   ++VFD    +S  +W  +I
Sbjct: 116 FKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMI 175

Query: 248 SAYAAHGDASKAVSLF-NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
             +  +    + V LF   M       D VTF + L+A +    +     + +A + +  
Sbjct: 176 GGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQM-HAFTMKNH 234

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
              SV     ++ + SR   +  + E   KMP K     W  ++ G
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVS-WNTMISG 279



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 16/132 (12%)

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
            +VF     R +I W  ++S Y       +A+  F  M+  GI+P PV+F  V  A +  
Sbjct: 54  HKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSV 113

Query: 289 GLVDKA---WDIFNAMSGQYG-----IQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           G    A   + +   +  +Y      +  ++  YA  +G L   R++ ++        ++
Sbjct: 114 GDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYA-ELGCLDLCRKVFDSC-------LE 165

Query: 341 PSAKVWGALLYG 352
            SA+VW  ++ G
Sbjct: 166 KSAEVWNTMIGG 177


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/473 (34%), Positives = 263/473 (55%), Gaps = 9/473 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           + K D+  +N+MI  ++           +F  M+      P+  T V V +ACG    ++
Sbjct: 75  IPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVL 134

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G ++    I+  ++ +L++ NA+I MYA  G +D AR + D   D+D  S++ +I GY+
Sbjct: 135 EGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYV 194

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G + +A ++F  M    + +W  +I+G VQ    +  LDL  EM  +G  PN  T++S
Sbjct: 195 GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLAS 254

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             +  ++   L  G+ IH Y  K+    N  +  +++D YAK G +  A +VF    G  
Sbjct: 255 ALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLK 314

Query: 240 LIIW--TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           L +W   A+I  YA HG + +A+ LF +M    + P+ VTF A+L+AC+H  LV++    
Sbjct: 315 LKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGY 374

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F +M+  YGI+P +EHY CMV +L R+  + EA E V  MP+ P A +WGALL    I  
Sbjct: 375 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHK 434

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D+E G+ +   + E++ ++ G ++++ANLYS +G+WDEA  VR++++ SG  K PG S I
Sbjct: 435 DIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 494

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           E +G    F+  D S  +++Q+YL L+ +   ++  GY      VLLD  +EE
Sbjct: 495 ELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEE 547



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 178/465 (38%), Gaps = 116/465 (24%)

Query: 23  EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82
           + C + F++ LNS  L+      +  L++C   + I    + H  +I + + +     N 
Sbjct: 2   KRCYSTFKKPLNSNQLQ------LFSLESCKSMNQI---KQTHAHLITTGLILHPITANK 52

Query: 83  LIGMY--AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           L+ +   +  GSL YA  L D++   D   Y+ +I  + V                    
Sbjct: 53  LLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAV-------------------- 92

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
                    +  + H ++   +  ++ SG  PN  T   +F    +   +  G++I  +A
Sbjct: 93  ---------IPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHA 143

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRV----------------------------- 231
           +K   + N++V  A+I  YA  G +  A+RV                             
Sbjct: 144 IKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAK 203

Query: 232 --FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287
             FD    R ++ WT II+ Y   G   +A+ LF+EML  G  P+  T  + L+ACA+  
Sbjct: 204 EMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLV 263

Query: 288 ---------------------------------SGLVDKAWDIFNAMSGQYGIQPSVEHY 314
                                             G +D A  +F+    +YG++  V  +
Sbjct: 264 ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH---DEYGLKLKVWPW 320

Query: 315 ACMVGVLSRARRISEATEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHL-- 369
             M+G  +   +  EA +   +M V+   P+   + ALL   S    VE G+     +  
Sbjct: 321 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMAS 380

Query: 370 -FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + IEPE   +Y  M +L  ++G   EA+     M  +  A I G
Sbjct: 381 SYGIEPE-IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWG 424


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 242/456 (53%), Gaps = 35/456 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS-SDIVFGM 62
           RD+VSWN+MI+GY+Q G  EE  A F EM  + V  P+  T++SVL AC QS S +  G 
Sbjct: 223 RDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKV-TPNVSTMLSVLSACAQSGSSLQLGN 281

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            V +++ +  +  ++ + N LI MY KCG L                             
Sbjct: 282 WVRSWIEDRGLGSNIRLVNGLIDMYVKCGDL----------------------------- 312

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
             E+A +LF+ ++   + +WN +I G    + ++  L L R M  S + PN VT  SI  
Sbjct: 313 --EEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILP 370

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             ++   L  GK +H Y  KN       VA  T++ID YAK G L  A+R+FD    +SL
Sbjct: 371 ACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSL 430

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W A+IS +A HG    A+ LF+ M + G  PD +TF  VL+AC H+GL+      F++
Sbjct: 431 ATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSS 490

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y + P + HY CM+ +  RA    EA   V  M +KP   +W +LL    I   +E
Sbjct: 491 MIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIE 550

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V  HLFE+EPEN   Y++++N+Y+ AGRW++  ++R ++ ++ + K+PG S IE  
Sbjct: 551 LAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVD 610

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F+  D    +S +IY +L+ +   + + G+V
Sbjct: 611 SVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFV 646



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 206/438 (47%), Gaps = 43/438 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V WN MI G S           +  M++S    P+  T  S+ ++C +      G +VH 
Sbjct: 94  VIWNHMIRGLSSSESPFLALEYYVHMISSGT-EPNEYTFPSIFKSCTKIRGAHEGKQVHA 152

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            V++  ++ + ++  +LI MYA+ G L  AR + D+ S +D VS++A+I+GY   GF+++
Sbjct: 153 HVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDE 212

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A +LF  +    + +WNA+ISG  Q+ R E  +    EM+ + V PN  T+ S+ S  + 
Sbjct: 213 ARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQ 272

Query: 187 F-SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
             S+L+ G  +  +        NI +   +ID Y K G L  A  +F++ + ++++ W  
Sbjct: 273 SGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNV 332

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQ 304
           +I  Y       +A+ LF  M+ + I P+ VTF ++L ACA+ G +D   W         
Sbjct: 333 MIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNM 392

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--DVELG 362
             ++ +V  +  ++ + ++   ++ A      M  K S   W A++ G ++ G  D  LG
Sbjct: 393 KSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTK-SLATWNAMISGFAMHGHTDTALG 451

Query: 363 KF--------------------VCDHL----------------FEIEPENTGNYIIMANL 386
            F                     C H                 +++ P+   +Y  M +L
Sbjct: 452 LFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPK-LPHYGCMIDL 510

Query: 387 YSQAGRWDEADRVREQMK 404
           + +AG +DEA+ + + M+
Sbjct: 511 FGRAGLFDEAETLVKNME 528



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 144/296 (48%), Gaps = 20/296 (6%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG +  A+ LF+ ++ P    WN +I GL  +      L+    M +SG  PN  T  SI
Sbjct: 75  HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSI 134

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +       GK++H + +K   + N +V T++I+ YA+ G L  A+ VFD+   R  
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + +TA+I+ YA+ G   +A  LF+E+       D V++ A++S  A SG V++A   F  
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVR----DVVSWNAMISGYAQSGRVEEAMAFFEE 250

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATE-------FVSKMPVKPSAKVWGALLYGA 353
           M  +  + P+V   + M+ VLS   +   + +       ++    +  + ++   L+   
Sbjct: 251 MR-RAKVTPNV---STMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMY 306

Query: 354 SISGDVELGKFVCDHLFE-IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              GD+E       +LFE I+ +N  ++ +M   Y+    + EA  +  +M +S +
Sbjct: 307 VKCGDLEEA----SNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ + + +WN+MI+G++  G  +    LF  M  S    PD +T V VL AC  +  +  
Sbjct: 425 MNTKSLATWNAMISGFAMHGHTDTALGLFSRM-TSEGFVPDDITFVGVLTACKHAGLLSL 483

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
           G    + +I+ + +   L     +I ++ + G  D A  L+  M  K D   + +++   
Sbjct: 484 GRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGAC 543

Query: 119 MVHGFVEKA 127
            +H  +E A
Sbjct: 544 RIHRRIELA 552


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 245/453 (54%), Gaps = 32/453 (7%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           ++D VSW++MI G +Q G  +E    FREM     L+ D     SVL ACG    I  G 
Sbjct: 229 EKDSVSWSAMIKGLAQNGMEKEAIECFREM-KIEGLKMDQYPFGSVLPACGGLGAINDGR 287

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +I ++++  +++ +ALI MY KC  L YA+ + D M  K+ V             
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV------------- 334

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                             +W A++ G  Q  R    + +  +MQ SG+ P+  T+    S
Sbjct: 335 ------------------SWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAIS 376

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++ S+L+ G + HG A+       I V+ +++  Y K G +  + R+F+    R  + 
Sbjct: 377 ACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVS 436

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA++SAYA  G A +A+ LF++M+  G++PD VT T V+SAC+ +GLV+K    F  M 
Sbjct: 437 WTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMI 496

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +YGI PS  HY+CM+ + SR+ RI EA  F++ MP +P A  W  LL      G++E+G
Sbjct: 497 NEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIG 556

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K+  + L E++P +   Y +++++Y+  G+WD   ++R  MKE  + K PG+SWI+  G 
Sbjct: 557 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGK 616

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           L SF A D S   S+QIY  LE L   + + GY
Sbjct: 617 LHSFSADDESSPYSDQIYAKLEELYQKIIDNGY 649



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 209/437 (47%), Gaps = 48/437 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD V+WN +I GYS  G        +  M+         VT++++L+    +  +  
Sbjct: 95  LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSL 154

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI+   +  L + + L+ MY+K G +  A+ +   + D++ V Y+ ++ G + 
Sbjct: 155 GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLA 214

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A+ LF+ M++  +S W+A+I GL QN   +  ++  REM+  G++ +     S+
Sbjct: 215 CGMIEDALQLFRGMEKDSVS-WSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSV 273

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                    +  G++IH   ++     +IYV +A+ID Y K   LH A+ VFDR K +++
Sbjct: 274 LPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 333

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           + WTA++  Y   G A +AV +F +M  +GI PD  T    +SACA+             
Sbjct: 334 VSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGK 393

Query: 288 ----------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                                  G +D +  +FN M+    ++  V  +  MV   ++  
Sbjct: 394 AITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMN----VRDEVS-WTAMVSAYAQFG 448

Query: 326 RISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
           R  EA +   KM    +KP       ++   S +G VE G+   + +   + I P N G+
Sbjct: 449 RAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSN-GH 507

Query: 380 YIIMANLYSQAGRWDEA 396
           Y  M +L+S++GR +EA
Sbjct: 508 YSCMIDLFSRSGRIEEA 524



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 163/357 (45%), Gaps = 29/357 (8%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +I +    + ++ N ++  YA   S  YAR + D +   +  S++ ++  Y   G 
Sbjct: 25  IHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGH 84

Query: 124 VEKAMDLFQVMKRPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           + +    F+ +      TWN +I     SGLV     +A   ++++  ++  R   VT+ 
Sbjct: 85  LSEMERTFEKLPDRDGVTWNVLIEGYSLSGLV-GAAVKAYNTMMKDFSSNLTR---VTLM 140

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++  L S   ++  GK+IHG  +K  ++  + V + ++D Y+K G +  A++VF     R
Sbjct: 141 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDR 200

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + +++  ++    A G    A+ LF      G++ D V+++A++   A +G+  +A + F
Sbjct: 201 NTVMYNTLMGGLLACGMIEDALQLF-----RGMEKDSVSWSAMIKGLAQNGMEKEAIECF 255

Query: 299 NAMS------GQYGIQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
             M        QY     +   AC  +G ++  R+I      + +  ++    V  AL+ 
Sbjct: 256 REMKIEGLKMDQYPFGSVLP--ACGGLGAINDGRQIHAC---IIRTNLQDHIYVGSALID 310

Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
                  +   K V D +   + +N  ++  M   Y Q GR  EA ++   M+ SG+
Sbjct: 311 MYCKCKCLHYAKTVFDRM---KQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI 364



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K IHG  ++       ++   I+  YA       A+RVFD     +L  W  ++ AY+  
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           G  S+    F ++ +     D VT+  ++   + SGLV  A   +N M
Sbjct: 83  GHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTM 126



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 9/219 (4%)

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           N++    ++  Y+K+G L   +R F++   R  + W  +I  Y+  G    AV  +N M+
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 268 NN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
            +       VT   +L   + +G V     I   +  + G +  +   + ++ + S+   
Sbjct: 128 KDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVI-KLGFESYLLVGSPLLDMYSKVGC 186

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           IS+A +    +  + +  ++  L+ G    G +E        LF    +++ ++  M   
Sbjct: 187 ISDAKKVFYGLDDRNTV-MYNTLMGGLLACGMIEDAL----QLFRGMEKDSVSWSAMIKG 241

Query: 387 YSQAGRWDEADRVREQMKESGLA--KIPGRSWIECSGGL 423
            +Q G   EA     +MK  GL   + P  S +   GGL
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGL 280


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 256/478 (53%), Gaps = 43/478 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIV 59
           ++  +I + N+ +   +Q   +      F   ++SP    PD  T  SVL+AC   + +V
Sbjct: 50  LASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVV 109

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISG 117
            G ++H  V +   + +L++ N+LI MY K G L  AR L DEM   D++ V ++A+I+G
Sbjct: 110 NGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAG 169

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVT 176
           Y                                QN ++   +++ R MQ   GV PN VT
Sbjct: 170 Y-------------------------------AQNEKYSDAIEVFRMMQQFGGVVPNDVT 198

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S+    +H   L  GK I G+  +      +++  A+ D YAK G +  A+RVF++ +
Sbjct: 199 LVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKME 258

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R +I W+ II   A +G A +A   F EML+ G +P+ V F  +L+AC H+GLV K  +
Sbjct: 259 ERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLN 318

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            FN M  +YG+ P VEHY C+V +LSRA  + +A + +S MP+KP+  +WGALL G  I 
Sbjct: 319 CFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIY 378

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            D   G+ V  H+ E++ +++G+Y+ +AN+YS  GR D+A + R +M+E+G+ K PG SW
Sbjct: 379 RDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSW 438

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
           IE    +  F   D S  +S +IY ++  L+  M+  GY          +DE E+E A
Sbjct: 439 IEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDA 496



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 5/177 (2%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA--VTIS 178
           H  V +A  +F  +  P +   NA +  L QN+     +       +S   PN    T +
Sbjct: 37  HANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFT 96

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--K 236
           S+    +  +++  G++IH    K  ++ N++V  ++ID Y K G+L  A+ +FD    +
Sbjct: 97  SVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVR 156

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVD 292
            R+++ W A+I+ YA +   S A+ +F  M    G+ P+ VT  +VL ACAH G +D
Sbjct: 157 DRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALD 213



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 48/243 (19%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D N+ +A  +I   A    +  A  +F      ++    A + A A +     A+  FN 
Sbjct: 22  DPNL-IAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNH 80

Query: 266 MLN--NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            ++  N   PD  TFT+VL ACA    V     I +AM  + G + ++     ++ +  +
Sbjct: 81  QVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKI-HAMVTKQGFESNLFVRNSLIDMYFK 139

Query: 324 ARRISEATEFVSKMPVKPSAKV-WGALL---------------------YGASISGDVEL 361
           A  +  A     +M V+    V W A++                     +G  +  DV L
Sbjct: 140 AGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTL 199

Query: 362 GKFV--CDHLFEIEPENTGNYI-----------------IMANLYSQAGRWDEADRVREQ 402
              +  C HL  ++    G +I                  +A++Y++ G   EA RV  +
Sbjct: 200 VSVLPACAHLGALD---LGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNK 256

Query: 403 MKE 405
           M+E
Sbjct: 257 MEE 259


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 248/456 (54%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSWN+MI  Y +    ++   LF EM   P    D V+  +++    +   ++ 
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM---P--EKDSVSWTAMINGYVRVGKLLQ 313

Query: 61  GMEVHNFV--------------------------IESHIKMDLWIC-NALIGMYAKCGSL 93
             E+ N +                          I S I +   +C N++I  YA CG  
Sbjct: 314 AREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRT 373

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
           D A  L  EM  KD VS++ +I+ Y   G ++KA+++F  M+   + +WN++I+G VQN 
Sbjct: 374 DEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNG 433

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
            +   L+    M+  G +P+  TI       ++ + L  G ++H   +K  +  +++V  
Sbjct: 434 LYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN 493

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           AI+  YAK+G +  A+ VF   K + ++ W ++I+ YA +G   +AV LF  M   GI P
Sbjct: 494 AILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIP 553

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D VTFT +LSAC H G VD+  ++F +M+  Y I+P  EHYAC++ +L R  R+ EA E 
Sbjct: 554 DEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEI 613

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           V  M    SAK+WGALL+   I  ++EL K+  + L  +EP+N  NY++++N++++AGRW
Sbjct: 614 VQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRW 673

Query: 394 DEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAK 429
           D  +RVR  MKE+   K PG SWIE    L  F++K
Sbjct: 674 DMVERVRVLMKENKAEKQPGCSWIEIDNQLHCFLSK 709



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 195/457 (42%), Gaps = 85/457 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSWNSMIAGY      E+   LF  M      + D  +   ++    +  ++  
Sbjct: 72  MPQRNLVSWNSMIAGYLHNELVEDAARLFDRMF-----KRDIYSWTLMITCYTRIGELEK 126

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+ N + +   K D    NALI  YAK      A+ L DEM  K+ VS+++I+SGY  
Sbjct: 127 ARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTK 183

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G ++  +  F+ M    + +WN ++ G V     ++     +++      PN V+  ++
Sbjct: 184 NGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPT----PNVVSWVTM 239

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S F+H+                                   G +  A+ +F+    ++L
Sbjct: 240 LSGFAHY-----------------------------------GRMTEARNLFNEMPTKNL 264

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I AY        A  LF EM     + D V++TA+++     G + +A +I N 
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREILNL 320

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +     ++     M+    ++ R+ EA E  S++ V+ S   W +++ G +  G  +
Sbjct: 321 MPYK-----NIAAQTAMINGYLQSGRMDEANEIFSQISVRDSV-CWNSMITGYAHCGRTD 374

Query: 361 -----LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
                  + VC  +       + N +I A  Y+QAG+ D+A  +  +M+E  +      S
Sbjct: 375 EALRLFQEMVCKDMV------SWNTMIAA--YAQAGQMDKALEMFNEMQERNVV-----S 421

Query: 416 WIECSGG----------LQSFVAKDTSGDKSEQIYLI 442
           W     G          L  F+     G+K +Q  ++
Sbjct: 422 WNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIV 458



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 47/352 (13%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N  I    + G ++ A A+  +M++++ V+Y+++IS Y  +G +  A +LF +M +  L 
Sbjct: 19  NLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLV 78

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN++I+G + N   E    L   M     + +  + + + + ++    L+  +E+    
Sbjct: 79  SWNSMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGELEKARELFNL- 133

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           + ++ D       A+I  YAK      A+++FD    ++++ W +I+S Y  +G     +
Sbjct: 134 LPDKQD--TVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGL 191

Query: 261 SLFNEMLNNGI---------------------------QPDPVTFTAVLSACAHSGLVDK 293
             F  M    +                            P+ V++  +LS  AH G + +
Sbjct: 192 QFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTE 251

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           A ++FN M  +     ++  +  M+G   R  +I +A +   +MP K S   W A+    
Sbjct: 252 ARNLFNEMPTK-----NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVS-WTAM---- 301

Query: 354 SISGDVELGKFV-CDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQM 403
            I+G V +GK +    +  + P +N      M N Y Q+GR DEA+ +  Q+
Sbjct: 302 -INGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQI 352



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 9/144 (6%)

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           ++     I    ++G +  A  VF +   R+++ + ++ISAYA +G  + A  LF+ M  
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLM-- 72

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
              Q + V++ ++++   H+ LV+ A  +F+ M      +  +  +  M+   +R   + 
Sbjct: 73  --PQRNLVSWNSMIAGYLHNELVEDAARLFDRM-----FKRDIYSWTLMITCYTRIGELE 125

Query: 329 EATEFVSKMPVKPSAKVWGALLYG 352
           +A E  + +P K       AL+ G
Sbjct: 126 KARELFNLLPDKQDTVCRNALIAG 149


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 249/455 (54%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ R+ V+W++++ G+   G   E  +LF++ML   +      +V S L+AC   SD+  
Sbjct: 294 MAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCL 353

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S +  DL   N+L+ MYAK G                             
Sbjct: 354 GKQLHALLAKSGLHTDLTAGNSLLSMYAKAG----------------------------- 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A  LF  M      +++A++SG VQN + +    + R+MQA  V+P+  T+ S+
Sbjct: 385 --LIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSL 442

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ GK  HG  +         +  A+ID YAK G +  ++++FD    R +
Sbjct: 443 IPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDI 502

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF +M +   +PD VTF  ++SAC+HSGLV +    F+ 
Sbjct: 503 VSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHM 562

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+ +YGI P +EHY  MV +L+R   + EA +F+  MP+K   +VWGALL    +  +++
Sbjct: 563 MAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNID 622

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + ++ PE TGN+++++N++S AGR+DEA  VR   KE G  K PG SWIE +
Sbjct: 623 LGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEIN 682

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +F+  D S  +S +IY  L+ +L  + + GY
Sbjct: 683 GSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGY 717



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 185/407 (45%), Gaps = 47/407 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+WN+M+AGY+  G Y +  A    M +     P+  T+V++L    Q   +  
Sbjct: 190 MPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHA--PNASTLVALLPLLAQHGALSQ 247

Query: 61  GMEVHNFVIES---HIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           G  VH + + +   H   D + +  AL+ MYAKCG L YA  + + M+ ++EV++SA++ 
Sbjct: 248 GRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           G+++ G + +A  LF+ M   GL                                 +  +
Sbjct: 308 GFVLCGRMLEAFSLFKDMLAQGLCFL------------------------------SPTS 337

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           ++S     ++ S+L  GK++H    K+    ++    +++  YAK G +  A  +FD+  
Sbjct: 338 VASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMV 397

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            +  + ++A++S Y  +G A +A  +F +M    +QPD  T  +++ AC+H   +     
Sbjct: 398 VKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKC 457

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
              ++  + GI         ++ + ++  RI  + +    MP +     W  ++ G  I 
Sbjct: 458 GHGSVIVR-GIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVS-WNTMIAGYGIH 515

Query: 357 GDVELGKFVCDHLFEI-----EPENTGNYIIMANLYSQAGRWDEADR 398
           G   LGK       ++     EP++   +I + +  S +G   E  R
Sbjct: 516 G---LGKEATALFLDMKHQACEPDDV-TFICLISACSHSGLVTEGKR 558



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 46/331 (13%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           +P+  T   VL+AC    D+     VH     + +  DL++  AL+ +YAKC S  +A  
Sbjct: 126 QPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAAT 185

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158
           +   M  +D V+++A+++GY +HG     +                            A 
Sbjct: 186 VFRRMPARDVVAWNAMLAGYALHGKYSDTI----------------------------AC 217

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK----NRYDRNIYVATA 214
           L L+++  A    PNA T+ ++  L +    L  G+ +H Y+V+    + +   + V TA
Sbjct: 218 LLLMQDDHA----PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTA 273

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-P 273
           ++D YAK G L  A RVF+    R+ + W+A++  +   G   +A SLF +ML  G+   
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFL 333

Query: 274 DPVTFTAVLSACAHSGLVDKAW-DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
            P +  + L ACA+  L D       +A+  + G+   +     ++ + ++A  I +AT 
Sbjct: 334 SPTSVASALRACAN--LSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATT 391

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGK 363
              +M VK +        Y A +SG V+ GK
Sbjct: 392 LFDQMVVKDTVS------YSALVSGYVQNGK 416



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           M+ G +  A  LF  +  PG+  +NA+I          A+       +    +PN  T  
Sbjct: 74  MICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFP 133

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +    S   +L+  + +H +A +     +++V+TA++D YAK      A  VF R   R
Sbjct: 134 FVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
            ++ W A+++ YA HG  S  ++    ++ +   P+  T  A+L   A  G + +
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQ 247


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 256/469 (54%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWNS+++G S  G+   C   F  M      +P+ VT++SV+ AC     +  
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  +     + N+LI MY K G                             
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLG----------------------------- 213

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             F++ A  LF+ M    L +WN+++     N   E  +DL   M+ +G+ P+  T+ ++
Sbjct: 214 --FLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVAL 271

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +     +  + IH Y  +  ++ +I +ATA+++ YAK G L+ ++ +F+  K R  
Sbjct: 272 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 331

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+++ YA H    +A+ LF+ M+  G++ D VTFT +LSAC+HSGLV++    F  
Sbjct: 332 IAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEI 391

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  Y ++P ++HY+CMV +L R+ R+ +A E +  MP++PS+ VWGALL    + G+VE
Sbjct: 392 MSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVE 451

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V + L  ++P +  NYI+++N+YS AG W +A +VR  MKE  L + PG S+IE  
Sbjct: 452 LGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHG 511

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  FV  D    +S++I+  LE L+  +RE G       +L +++EE
Sbjct: 512 NKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEE 560



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 34/312 (10%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           V S++ A    + + +   +H  VI+S    D +I + L+ MY K G  + A+ L DEM 
Sbjct: 65  VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMP 124

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           +KD VS+++++SG    G++   ++ F  M+                             
Sbjct: 125 NKDLVSWNSLMSGLSGRGYLGACLNAFCRMR----------------------------- 155

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
              SG +PN VT+ S+ S  +    L  GK +HG  VK        V  ++I+ Y K GF
Sbjct: 156 -TESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF 214

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A ++F+    RSL+ W +++  +  +G A K + LFN M   GI PD  T  A+L A
Sbjct: 215 LDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRA 274

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           C  +GL  +A  I +A   + G    +     ++ + ++  R++ + +   +  +K   +
Sbjct: 275 CTDTGLGRQAESI-HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEE--IKDRDR 331

Query: 345 V-WGALLYGASI 355
           + W A+L G ++
Sbjct: 332 IAWTAMLAGYAV 343


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 262/469 (55%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V+W++M+AG+   G   +   ++R M    V + D V ++ V+QAC  + ++  
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV-KGDEVVMIGVIQACTAARNVRM 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++   ++MD+    +L+ MYAK G LD A  +   M  +++VS          
Sbjct: 228 GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS---------- 277

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+ISG  QN + +  L L R MQASG++P++  + S 
Sbjct: 278 ---------------------WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSA 316

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+   LK G+ +HG+ V+ R+D N  + TA ID Y+K G L  AQ +F+    R L
Sbjct: 317 LLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDL 375

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W A+I+   AHG    A++LF EM   G++PD  TF ++LSA +HSGLV++    F  
Sbjct: 376 ILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGC 435

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I P+ +HY C+V +L+R+  + EA++ ++ M  +P+  +W ALL G   +  +E
Sbjct: 436 MVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLE 495

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ + D++ E++P++ G   +++NLY+   +WD+  +VR+ MK+SG  K+PG S IE  
Sbjct: 496 LGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIR 555

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G   +F+ +D S  + E+I   + +L   MR+ GY+     +  ++EEE
Sbjct: 556 GTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE 604



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 61/115 (53%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RP++ T +   S  +   +L+GG+ +   A    Y  +++V ++++  YA+ G +  A +
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           VFDR   R  + W+ +++ + + G    A+ ++  M  +G++ D V    V+ AC
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 253/458 (55%), Gaps = 37/458 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +RD V+W ++I+GYSQ      C AL  F +ML      P+  T+ SV++A       
Sbjct: 121 MPQRDFVTWTTLISGYSQHD--RPCDALLFFNQMLRFGY-SPNEFTLSSVIKAAAAERRG 177

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G ++H F ++     ++ + +AL+ +Y + G +D A+ + D +  +++V         
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV--------- 228

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                 +WNA+I+G  + +  E  L+L + M   G RP+  + +
Sbjct: 229 ----------------------SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+F   S    L+ GK +H Y +K+      +    ++D YAK+G +H A+++FDR   R
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W ++++AYA HG   +AV  F EM   GI+P+ ++F +VL+AC+HSGL+D+ W  +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYY 386

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M    GI P   HY  +V +L RA  ++ A  F+ +MP++P+A +W ALL    +  +
Sbjct: 387 ELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKN 445

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG +  +H+FE++P++ G ++I+ N+Y+  GRW++A RVR++MKESG+ K P  SW+E
Sbjct: 446 TELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVE 505

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               +  FVA D    + E+I    E +L  ++E GYV
Sbjct: 506 IENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 543



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 31/247 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L+ C     ++ G  VH  +++S  + D+ + N L+ MYAKCGSL+ AR + ++M  +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D V+++ +ISGY  H     A+  F  M R G S                          
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS-------------------------- 158

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
                PN  T+SS+    +       G ++HG+ VK  +D N++V +A++D Y + G + 
Sbjct: 159 -----PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            AQ VFD  + R+ + W A+I+ +A      KA+ LF  ML +G +P   ++ ++  AC+
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273

Query: 287 HSGLVDK 293
            +G +++
Sbjct: 274 STGFLEQ 280


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 252/473 (53%), Gaps = 53/473 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWN+M++G S+ G  EE KA+F                               
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVF------------------------------L 135

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
            M V N V         W  NA++  +A    +  A        +K D V ++A++SGYM
Sbjct: 136 AMPVRNSVS--------W--NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYM 185

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G V KA++ F+ M    L +WNAV++G V+N+  +  L L R M + + V+PNA T+S
Sbjct: 186 DIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 245

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    S+ S L  GK+IH + +K    RN+ V T+++  Y K G L  A ++F     R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+IS YA HGD  +A++LF  M + G++P+ +TF AVL+AC H+GL D     F
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCF 365

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   YGI+P V+HY+CMV +L RA ++  A + +  MP +P    +G LL    +  +
Sbjct: 366 EGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKN 425

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E  +     L E +P++ G Y+ +AN+Y+ A +WD+  RVR  MK++ + K PG SWIE
Sbjct: 426 LEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIE 485

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGL---MREEGYV-----LLDEVEE 463
             G +  F + D       Q+YLI E+L  L   M+  GYV     +L +V+E
Sbjct: 486 IKGVMHEFRSNDR---LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDE 535



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 34/339 (10%)

Query: 81  NALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
           N L+  YA+  G L  AR L D +   D VSY+ ++S +   G  + A  LF  M    +
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 111

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
            +WN ++SGL ++    AV +      A  VR N+V+ +++ S F+   ++   +E    
Sbjct: 112 VSWNTMVSGLSKSG---AVEEAKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEW--- 164

Query: 200 AVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
             +N  ++ +  + TA++  Y   G +  A   F+    R+L+ W A+++ Y  +  A  
Sbjct: 165 -FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADD 223

Query: 259 AVSLFNEMLNNG-IQPDPVTFTAVLSACAH-----SGLVDKAWDIFNAMSGQYGIQPSVE 312
           A+ LF  M+    +QP+  T ++VL  C++      G     W +   +S    +  S+ 
Sbjct: 224 ALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV 283

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE- 371
              C  G L      S A +   +M  +     W A++ G +  GD   GK   + LFE 
Sbjct: 284 SMYCKCGDL------SSACKLFGEMHTR-DVVAWNAMISGYAQHGD---GKEAIN-LFER 332

Query: 372 -----IEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
                +EP N   ++ +       G  D   R  E M+E
Sbjct: 333 MKDEGVEP-NWITFVAVLTACIHTGLCDFGIRCFEGMQE 370


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 261/465 (56%), Gaps = 2/465 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R+ VSW  +I G+ Q G + E   LF +M  + ++  D   + +++  C    D+  
Sbjct: 355 LRDRNTVSWTVLIGGFLQYGCFSESLELFNQM-RAELMTVDQFALATIISGCSNRMDMCL 413

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H+  ++S     + I N+LI MYAKCG+L  A ++   M ++D VS++ +++ Y  
Sbjct: 414 ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQ 473

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
            G + KA + F  M    + TWNA++   +Q+   E  L +   M     V P+ VT  +
Sbjct: 474 VGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVT 533

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F   +     K G +I G+ VK     +  V  A+I  Y+K G +  A+++FD    + 
Sbjct: 534 LFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKD 593

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+ W A+I+ Y+ HG   +A+ +F++ML  G +PD +++ AVLS+C+HSGLV +    F+
Sbjct: 594 LVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFD 653

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            +   + + P +EH++CMV +L+RA  + EA   + +MP+KP+A+VWGALL      G+ 
Sbjct: 654 MLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNN 713

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL +    HLF+++  ++G Y+++A +Y+ AG+  ++ +VR+ M++ G+ K PG SW+E 
Sbjct: 714 ELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEV 773

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
              +  F A+D S  +   I   L+ L+  + + GYV  + +  E
Sbjct: 774 KNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRTESLRSE 818



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 149/287 (51%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ SWN++++GY Q G + +    F  M  S    P+  T    +++CG       
Sbjct: 121 MPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEV 180

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++   + +   + D  +   ++ M+ +CG++D+A     ++        +++++GY  
Sbjct: 181 ALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAK 240

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V+ A++LF+ M    + +WN ++S L Q+ R    L +  +M   GVR ++ T +S 
Sbjct: 241 SYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSS 300

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S+L  GK++H   +++    + YVA+A+++ YAK G    A+RVF   + R+ 
Sbjct: 301 LTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNT 360

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           + WT +I  +  +G  S+++ LFN+M    +  D      ++S C++
Sbjct: 361 VSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN 407



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 33/275 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL-DEM 103
           +   L++CG    +     +H  ++   +   +++ N L+  Y  CG+L  AR LL  ++
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
           ++ + ++++ +++GY   G +  A +LF  M R  +++WN ++SG  Q+ R    ++   
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 164 EMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
            M+ SG   PNA T              +   ++ G   K  +  +  VAT I+D + + 
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 223 GFLHGAQR-------------------------------VFDRFKGRSLIIWTAIISAYA 251
           G +  A +                               +F+    R ++ W  ++SA +
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             G A +A+S+  +M N G++ D  T+T+ L+ACA
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACA 305


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 276/490 (56%), Gaps = 45/490 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M ++D+V+WN +I+GY Q G  E+  A++  +++    L+ D VT+ +++ A  ++ ++ 
Sbjct: 335 MFEKDVVTWNLIISGYVQQGLVED--AIYMCQLMRLEKLKYDCVTLATLMSAAARTENLK 392

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY- 118
            G EV  + I    + D+ + + ++ MYAKCGS+  A+ + D   +KD + ++ +++ Y 
Sbjct: 393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452

Query: 119 ----------------------------------MVHGFVEKAMDLFQVMKR----PGLS 140
                                             + +G V++A D+F  M+     P L 
Sbjct: 453 ESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLI 512

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W  +++G+VQN   E  +  +R+MQ SG+RPNA +I+   S  +H ++L  G+ IHGY 
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYI 572

Query: 201 VKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           ++N ++   + + T+++D YAK G ++ A++VF       L +  A+ISAYA +G+  +A
Sbjct: 573 IRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEA 632

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           ++L+  +   G++PD +T T VLSAC H+G +++A +IF  +  +  ++P +EHY  MV 
Sbjct: 633 IALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVD 692

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           +L+ A    +A   + +MP KP A++  +L+   +     EL  ++   L E EPEN+GN
Sbjct: 693 LLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGN 752

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG--GLQSFVAKDTSGDKSE 437
           Y+ ++N Y+  G WDE  ++RE MK  GL K PG SWI+ +G  G+  FVA D +  +  
Sbjct: 753 YVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRIN 812

Query: 438 QIYLILERLL 447
           +I ++L  LL
Sbjct: 813 EIQMMLALLL 822



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 198/403 (49%), Gaps = 42/403 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+ V+WN+++ GY Q G  EE   LF +M    V  P  VTV + L A      +  G +
Sbjct: 237 RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGV-EPTRVTVSTCLSASANMGGVEEGKQ 295

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H   I + +++D  +  +L+  Y K G ++YA  + D M +KD V              
Sbjct: 296 SHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVV-------------- 341

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            TWN +ISG VQ    E  + + + M+   ++ + VT++++ S 
Sbjct: 342 -----------------TWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSA 384

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   NLK GKE+  Y +++ ++ +I +A+ ++D YAK G +  A++VFD    + LI+W
Sbjct: 385 AARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILW 444

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +++AYA  G + +A+ LF  M   G+ P+ +T+  ++ +   +G VD+A D+F  M  
Sbjct: 445 NTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQS 504

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
             GI P++  +  M+  + +     EA  F+ KM    ++P+A      L   +    + 
Sbjct: 505 S-GIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLH 563

Query: 361 LGKFVCDHLFEIEPENTGNYI----IMANLYSQAGRWDEADRV 399
           +G+ +  H + I      + +     + ++Y++ G  ++A++V
Sbjct: 564 IGRTI--HGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKV 604



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 197/429 (45%), Gaps = 52/429 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIF-PDNFVVPNVCKACGALKWSRFGRG 194

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V++S ++  +++ ++L  MY KCG LD A  + DE+ D++ V+             
Sbjct: 195 VHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA------------- 241

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++ G VQN ++E  + L  +M+  GV P  VT+S+  S 
Sbjct: 242 ------------------WNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSA 283

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T++++ Y K G +  A+ VFDR   + ++ W
Sbjct: 284 SANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTW 343

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             IIS Y   G    A+ +   M    ++ D VT   ++SA A +     G   + + I 
Sbjct: 344 NLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIR 403

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           ++      +  +V       G +  A+++ ++T       V+    +W  LL   + SG 
Sbjct: 404 HSFESDIVLASTVMDMYAKCGSIVDAKKVFDST-------VEKDLILWNTLLAAYAESGL 456

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR- 414
             E  +       E  P N  T N II++ L  + G+ DEA  +  QM+ SG+  IP   
Sbjct: 457 SGEALRLFYGMQLEGVPPNVITWNLIILSLL--RNGQVDEAKDMFLQMQSSGI--IPNLI 512

Query: 415 SWIECSGGL 423
           SW     G+
Sbjct: 513 SWTTMMNGM 521



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 47/352 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  ++++      + +I   L+  YAKC +L+ A  L  ++  
Sbjct: 76  ILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRV 135

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII      G  E A+                   G V             EM
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGAL------------------MGFV-------------EM 164

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             + + P+   + ++          + G+ +HGY VK+  +  ++VA+++ D Y K G L
Sbjct: 165 LENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVL 224

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A +VFD    R+ + W A++  Y  +G   +A+ LF++M   G++P  VT +  LSA 
Sbjct: 225 DDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSAS 284

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G V++     A  I N M     +  S+ ++ C VG++       E  E V     +
Sbjct: 285 ANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLI-------EYAEMVFDRMFE 337

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                W  ++ G    G VE   ++C  L  +E     + + +A L S A R
Sbjct: 338 KDVVTWNLIISGYVQQGLVEDAIYMC-QLMRLEKLKY-DCVTLATLMSAAAR 387



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N   +  L LV EM    +R        I     +  +L  GK+I
Sbjct: 33  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQI 92

Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y RN Y+ T ++  YAK   L  A+ +F + + R++  W AII      G
Sbjct: 93  HARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIG 152

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
               A+  F EML N I PD      V  AC         W  F      Y ++  +E  
Sbjct: 153 LCEGALMGFVEMLENEIFPDNFVVPNVCKACGA-----LKWSRFGRGVHGYVVKSGLEDC 207

Query: 315 ACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
             +   L+    +   + +A++   ++P + +A  W AL+ G   +G  E
Sbjct: 208 VFVASSLADMYGKCGVLDDASKVFDEIPDR-NAVAWNALMVGYVQNGKNE 256


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 250/456 (54%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D +SW +MIAG++Q G   E   LFREM     L  D  T  SVL ACG    +  
Sbjct: 234 MQEKDSISWTAMIAGFTQNGLDREAIDLFREM-RLENLEMDQYTFGSVLTACGGVMALQE 292

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH ++I +  + ++++ +AL+ MY KC S+  A  +  +M+ K+ VS          
Sbjct: 293 GKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVS---------- 342

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A++ G  QN   E  + +  +MQ +G+ P+  T+ S+
Sbjct: 343 ---------------------WTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSV 381

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + H  A+ +     I V+ A++  Y K G +  + R+F        
Sbjct: 382 ISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDE 441

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA++S YA  G A++ + LF  ML +G +PD VTF  VLSAC+ +GLV K   IF +
Sbjct: 442 VSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFES 501

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I P  +HY CM+ + SRA R+ EA +F++KMP  P A  W +LL       ++E
Sbjct: 502 MIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNME 561

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  + L ++EP NT +YI+++++Y+  G+W+E   +R+ M++ GL K PG SWI+  
Sbjct: 562 IGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYK 621

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F A D S   S+QIY  LE+L   M +EGYV
Sbjct: 622 NQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYV 657



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 216/441 (48%), Gaps = 41/441 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+I+ Y+  GF  +    +  ML +     + + + ++L    +   +  
Sbjct: 101 MPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHL 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH  V++   +  +++ + L+ MY+K G +  AR   DEM +K+ V Y+ +I+G M 
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +E +  LF  M+     +W A+I+G  QN      +DL REM+   +  +  T  S+
Sbjct: 221 CSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV 280

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +       L+ GK++H Y ++  Y  NI+V +A++D Y K   +  A+ VF +   +++
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
           + WTA++  Y  +G + +AV +F +M NNGI+PD  T  +V+S+CA+             
Sbjct: 341 VSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCR 400

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVE---------------HYACMVGVLSRARRISE 329
              SGL+     + NA+   YG   S+E                +  +V   ++  + +E
Sbjct: 401 ALVSGLISFI-TVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANE 459

Query: 330 ATEFVSKMPV---KPSAKVWGALLYGASISGDVELGKFVCDHLFE----IEPENTGNYII 382
                  M     KP    +  +L   S +G V+ G  + + + +    I  E+  +Y  
Sbjct: 460 TLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIED--HYTC 517

Query: 383 MANLYSQAGRWDEADRVREQM 403
           M +L+S+AGR +EA +   +M
Sbjct: 518 MIDLFSRAGRLEEARKFINKM 538



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 156/348 (44%), Gaps = 36/348 (10%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  +I++    ++++ N L+  YAK   + YAR + D+M  ++  S++ ++S Y    
Sbjct: 30  KIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLA 89

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIF 181
            + +   +F  M    + +WN++IS           +     M  +G    N + +S++ 
Sbjct: 90  CLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTML 149

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            L S    +  G ++HG+ VK  +   ++V + ++D Y+KTG +  A++ FD    ++++
Sbjct: 150 ILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVV 209

Query: 242 I-------------------------------WTAIISAYAAHGDASKAVSLFNEMLNNG 270
           +                               WTA+I+ +  +G   +A+ LF EM    
Sbjct: 210 MYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLEN 269

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
           ++ D  TF +VL+AC     + +   + +A   +   Q ++   + +V +  + + I  A
Sbjct: 270 LEMDQYTFGSVLTACGGVMALQEGKQV-HAYIIRTDYQDNIFVGSALVDMYCKCKSIKSA 328

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISG-DVELGKFVCDHLFE-IEPEN 376
                KM  K +   W A+L G   +G   E  K  CD     IEP++
Sbjct: 329 ETVFRKMNCK-NVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDD 375



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 108/238 (45%), Gaps = 10/238 (4%)

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           P    ++++ S ++ F  +   + +     +    RN+Y    ++ +Y+K   L   +RV
Sbjct: 42  PEIFLLNNLVSAYAKFDRITYARRVFDQMPQ----RNLYSWNTLLSSYSKLACLPEMERV 97

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGL 290
           F     R ++ W ++ISAYA  G   ++V  +N ML NG    + +  + +L   +  G 
Sbjct: 98  FHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGC 157

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V     +   +  ++G Q  V   + +V + S+   +  A +   +MP K +  ++  L+
Sbjct: 158 VHLGLQVHGHVV-KFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEK-NVVMYNTLI 215

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            G      +E  + +    ++++ +++ ++  M   ++Q G   EA  +  +M+   L
Sbjct: 216 AGLMRCSRIEDSRQL---FYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENL 270



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 8/124 (6%)

Query: 182 SLFSHFSNL----KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           SL +H+  L    +  K+IH + +K   +  I++   ++  YAK   +  A+RVFD+   
Sbjct: 13  SLSNHYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQ 72

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R+L  W  ++S+Y+      +   +F+ M       D V++ +++SA A  G + ++   
Sbjct: 73  RNLYSWNTLLSSYSKLACLPEMERVFHAMPTR----DMVSWNSLISAYAGRGFLLQSVKA 128

Query: 298 FNAM 301
           +N M
Sbjct: 129 YNLM 132


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 256/460 (55%), Gaps = 33/460 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R IVSW S+I+GY+Q G   E   +F +M N+ V +PD + +VS+L+A     D+  
Sbjct: 215 LYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGV-KPDWIALVSILRAYTDVDDLEQ 273

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H FVI+  ++ +  +  +L   YAKCG +  A++  D+M                 
Sbjct: 274 GRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQM----------------- 316

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                         K   +  WNA+ISG  +N   E  ++L   M +  ++P++VT+ S 
Sbjct: 317 --------------KTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSA 362

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+  + +  Y  K+ Y  +I+V T++ID YAK G +  A+RVFDR   + +
Sbjct: 363 VLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDV 422

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+A+I  Y  HG   +A++L++ M   G+ P+ VTF  +L+AC HSGLV + W++F+ 
Sbjct: 423 VMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHC 482

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I P  EHY+C+V +L RA  + EA  F+ K+P++P   VWGALL    I   V 
Sbjct: 483 MK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVT 541

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG++  + LF ++P NTG+Y+ ++NLY+ +  WD    VR  M+E GL K  G S IE +
Sbjct: 542 LGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEIN 601

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460
           G LQ+F   D S   +++I+  L+RL   ++E G+V   E
Sbjct: 602 GKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTE 641



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 194/427 (45%), Gaps = 68/427 (15%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  WN++I  YS+   Y +   ++R M  + V  PDG T   VL+AC +  D      +
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGV-HPDGFTFPYVLKACTELLDFGLSCII 176

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +I+     D+++ N L+ +YAKCG +  A+ + D +  +  VS+++IISGY  +G  
Sbjct: 177 HGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKA 236

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
            +A+ +F                                +M+ +GV+P+ + + SI   +
Sbjct: 237 VEALRMFS-------------------------------QMRNNGVKPDWIALVSILRAY 265

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +   +L+ G+ IHG+ +K   +    +  ++   YAK G +  A+  FD+ K  ++I+W 
Sbjct: 266 TDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWN 325

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSG 303
           A+IS YA +G A +AV+LF+ M++  I+PD VT  + + A A  G ++ A W        
Sbjct: 326 AMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKS 385

Query: 304 QYG----IQPSVEHYACMVGVLSRARRIS-------------------------EATEFV 334
            YG    +  S+       G +  ARR+                          EA    
Sbjct: 386 NYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLY 445

Query: 335 SKMP---VKPSAKVWGALLYGASISGDVELG--KFVCDHLFEIEPENTGNYIIMANLYSQ 389
             M    V P+   +  LL   + SG V+ G   F C   FEI P N  +Y  + +L  +
Sbjct: 446 HVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNE-HYSCVVDLLGR 504

Query: 390 AGRWDEA 396
           AG   EA
Sbjct: 505 AGYLGEA 511



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 132/280 (47%), Gaps = 19/280 (6%)

Query: 98  ALLDEMSDK---DEVSYSAIISGYMVHGFVEK--------------AMDLFQVMKRPGLS 140
           +L+D  + K   D++    +ISG   +GF+                A  LF     P + 
Sbjct: 61  SLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVF 120

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
            WNA+I    +NN +   +++ R M+ +GV P+  T   +    +   +      IHG  
Sbjct: 121 MWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQI 180

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +K  +  +++V   ++  YAK G +  A+ VFD    R+++ WT+IIS YA +G A +A+
Sbjct: 181 IKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEAL 240

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            +F++M NNG++PD +   ++L A      +++   I +    + G++        +   
Sbjct: 241 RMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSI-HGFVIKMGLEDEPALLISLTAF 299

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            ++   ++ A  F  +M    +  +W A++ G + +G  E
Sbjct: 300 YAKCGLVTVAKSFFDQMKTT-NVIMWNAMISGYAKNGHAE 338


>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Vitis vinifera]
          Length = 539

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 255/447 (57%), Gaps = 4/447 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I +WNS+I G+S+G       ++F +ML   V  PD +T   + +A  + S++   + VH
Sbjct: 77  ISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVC-PDHLTYPFIAKAVARLSELRLALAVH 135

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             + +  +  D +I N+LI MY  CG +  AR + DEM  ++ VS++A++ GY   G ++
Sbjct: 136 CRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLD 195

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A  +F+ M    + +W+++I G V+   +   L +   M+  G + N VT+ S+    +
Sbjct: 196 SARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACA 255

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGRSLIIW 243
           H   L+ G+ +H Y V N     + + T+++D YAK G +  A  VF         +++W
Sbjct: 256 HLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMW 315

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             II   A HG   +++ LF EM   GI PD +T+  + SACAH GLV +AW  F ++ G
Sbjct: 316 NTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSL-G 374

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           + G+ P  EHYACMV VLSRA +++EA +F+++MP++P+A + GALL G       +L +
Sbjct: 375 KQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAE 434

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V   L E+EP++ G YI ++N+Y+    WD A  +RE M+  G+ K PG S++E  G L
Sbjct: 435 RVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVLGTL 494

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLM 450
             F+A D + +  E+IY++L  ++  M
Sbjct: 495 HRFIAHDKTHNDLEKIYMMLNTIVRQM 521



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 36/189 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+VSW+SMI G  +GG Y    A+F  M +  P  + + VT+VSVL AC     + 
Sbjct: 204 MPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGP--KANEVTMVSVLCACAHLGALE 261

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISG 117
            G  +H +++++ ++  L +  +L+ MYAKCG+++ A A+     M   D + ++ II G
Sbjct: 262 QGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGG 321

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
              HG V ++++LF                               +EMQ  G+ P+ +T 
Sbjct: 322 LATHGLVHESLELF-------------------------------KEMQVLGIVPDEITY 350

Query: 178 SSIFSLFSH 186
             +FS  +H
Sbjct: 351 LCLFSACAH 359



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           +S+SAI S     G ++ +  +F  +  P +S WN++I G  +       + +  +M   
Sbjct: 51  LSFSAISSW----GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRF 106

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           GV P+ +T   I    +  S L+    +H    K     + ++A ++I  Y   G +  A
Sbjct: 107 GVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSA 166

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           ++VFD    R+ + W A++  YA  GD   A  +F  M +     D V++++++  C   
Sbjct: 167 RKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDR----DVVSWSSMIDGCVKG 222

Query: 289 GLVDKAWDIFNAM 301
           G    A  IF  M
Sbjct: 223 GEYGVALAIFERM 235


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 253/458 (55%), Gaps = 37/458 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +RD V+W ++I+GYSQ      C AL  F +ML      P+  T+ SV++A       
Sbjct: 121 MPQRDFVTWTTLISGYSQHD--RPCDALLFFNQMLRFGY-SPNEFTLSSVIKAAAAERRG 177

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G ++H F ++     ++ + +AL+ +Y + G +D A+ + D +  +++V         
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV--------- 228

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                 +WNA+I+G  + +  E  L+L + M   G RP+  + +
Sbjct: 229 ----------------------SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+F   S    L+ GK +H Y +K+      +    ++D YAK+G +H A+++FDR   R
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W ++++AYA HG   +AV  F EM   GI+P+ ++F +VL+AC+HSGL+D+ W  +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYY 386

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M    GI P   HY  +V +L RA  ++ A  F+ +MP++P+A +W ALL    +  +
Sbjct: 387 ELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKN 445

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG +  +H+FE++P++ G ++I+ N+Y+  GRW++A RVR++MKESG+ K P  SW+E
Sbjct: 446 TELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVE 505

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               +  FVA D    + E+I    E +L  ++E GYV
Sbjct: 506 IENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 543



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 31/247 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L+ C     ++ G  VH  +++S  + D+ + N L+ MYAKCGSL+ AR + ++M  +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D V+++ +ISGY  H     A+  F  M R G S                          
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS-------------------------- 158

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
                PN  T+SS+    +       G ++HG+ VK  +D N++V +A++D Y + G + 
Sbjct: 159 -----PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            AQ VFD  + R+ + W A+I+ +A      KA+ LF  ML +G +P   ++ ++  AC+
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273

Query: 287 HSGLVDK 293
            +G +++
Sbjct: 274 STGFLEQ 280


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 256/457 (56%), Gaps = 3/457 (0%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            + + D+V+WN+MI+G+ Q G+ EE   LF  M +  V   +  T  SVL AC     +  
Sbjct: 640  LEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEH-TFASVLSACSNLRSLKL 698

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G EVH +V+++ +  + +IC+ L+ +Y KC ++ YA ++  E+  ++  S +++I GY  
Sbjct: 699  GKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSS 758

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             G + +A  LF  +       W A+  G V+  + EAV +L+ E +     P+ + + SI
Sbjct: 759  QGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISI 818

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                +  + L  GK+IH Y ++     +  + ++++D Y+K G +  A+R+F     +  
Sbjct: 819  IGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDS 878

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            II+  +I+ YA HG  ++AV LF EM+ +G +PD +TF A+LSAC H GLV+     F++
Sbjct: 879  IIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLVELGEHFFDS 938

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            MS  Y I P ++HYACM+ +  RA ++ +A EF+ K+P++  A +WGA L    I+G+ E
Sbjct: 939  MSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAE 998

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            L +   D L  IE EN   Y+ +AN+Y+  G W+E  R+R++MK   + K  G SW+   
Sbjct: 999  LARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVE 1058

Query: 421  GGLQSFVAKDTSGDKSEQIYLILERLLG--LMREEGY 455
                 F++ D    K+E IY  L  L    L REE +
Sbjct: 1059 SKFHVFISGDRFHSKNEAIYSTLASLTDELLYREEAF 1095



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 216/481 (44%), Gaps = 82/481 (17%)

Query: 4   RDIVSWNSMIAGYSQG-GFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIVFG 61
           +D+V++NSM++GY++  G+  +    F EM  +P ++R D  T++++L    +   I +G
Sbjct: 506 KDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYG 565

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALLDEMSDKDEVSYSAIISGYMV 120
            ++H+F++++   + ++  ++LI MY+KCG    A R         D VS +A+++    
Sbjct: 566 KQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCR 625

Query: 121 HGFVEKAMDLF-QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            G ++ A+DLF + +++  +  WN +ISG VQN   E  L L   M    V  N  T +S
Sbjct: 626 EGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFAS 685

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT----------------- 222
           + S  S+  +LK GKE+H Y +KNR   N ++ + ++D Y K                  
Sbjct: 686 VLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQN 745

Query: 223 --------------GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                         G +  A+++FD    ++ ++WTA+   Y           L +E   
Sbjct: 746 VYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRK 805

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----- 323
               PD +   +++ ACA    +     I + M  + GI+   +  + +V + S+     
Sbjct: 806 EAKVPDVLILISIIGACAIQAALVPGKQIHSYML-RAGIKLDTKLTSSLVDMYSKCGSII 864

Query: 324 -ARRI-------------------------SEATEFVSKMP---VKPSAKVWGALLYGAS 354
            A RI                         +EA +   +M     KP A  + ALL    
Sbjct: 865 YAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACR 924

Query: 355 ISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
             G VELG+   D +   + I PE   +Y  M +LY   GR ++ D+  E M+     KI
Sbjct: 925 HGGLVELGEHFFDSMSNDYNICPE-IDHYACMIDLY---GRANQLDKALEFMR-----KI 975

Query: 412 P 412
           P
Sbjct: 976 P 976



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 126/263 (47%), Gaps = 36/263 (13%)

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+  H   I+S     +++ N LI  YAK G L+ A+ L DEM +++  S++AII+ Y+ 
Sbjct: 430 GLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVK 489

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA-VLDLVREMQASG--VRPNAVTI 177
              + +A  LF       L T+N+++SG  +++ ++   L    EMQ +   +R +  T+
Sbjct: 490 SQNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTL 549

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF----- 232
            ++ +L +    +  GK++H + +K   D  ++ A+++ID Y+K GF   A RV+     
Sbjct: 550 ITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGE 609

Query: 233 ----------------------------DRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
                                          +   ++ W  +IS +  +G   +++ LF 
Sbjct: 610 VVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFV 669

Query: 265 EMLNNGIQPDPVTFTAVLSACAH 287
            M +  +  +  TF +VLSAC++
Sbjct: 670 RMADEKVGWNEHTFASVLSACSN 692



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           +F    +LK G   H   +K+ +   I+++  +I  YAK G L+ AQ++FD    R++  
Sbjct: 420 VFHEMKHLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFS 479

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           W AII+AY    +  +A +LF    ++ +  D VT+ ++LS  A S
Sbjct: 480 WNAIIAAYVKSQNLRQARALF----DSAVCKDLVTYNSMLSGYARS 521


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/430 (35%), Positives = 245/430 (56%), Gaps = 34/430 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+IVSWN+MIA Y+      E      +M  +    P+ VT  +VL AC +   +  
Sbjct: 274 LDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC-PNAVTFTNVLPACARLGFLGP 332

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   +   +  DL++ N+LI MYAKCG L  AR + +  S KDEVSY+ +I GY  
Sbjct: 333 GKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGY-- 389

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                +  D  Q                          L+L  EM+  G +P+ V+   +
Sbjct: 390 ----SETDDCLQS-------------------------LNLFSEMRLLGKKPDVVSFVGV 420

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ + LK GKE+HG A++N    +++V+ +++D Y K G +  A R+F++   + +
Sbjct: 421 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV 480

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  +I  Y   G+   A+S+F  M ++ +Q D V++ AVLSAC+H GLV++ W  F+ 
Sbjct: 481 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 540

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  Q  ++P+  HY CMV +L RA  + EA + + ++P+ P A +WGALL    I G+VE
Sbjct: 541 MLAQR-LEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 599

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   +HLFE++P++ G YI+++N+Y++ GRWDEA+++RE MK  G  K PG SW++  
Sbjct: 600 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIY 659

Query: 421 GGLQSFVAKD 430
             + +FVA++
Sbjct: 660 DQVHAFVAEE 669



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 163/334 (48%), Gaps = 40/334 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN++I   S  G Y E +  +  M+   V++P+ V+V+S+L       D   
Sbjct: 71  MPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEM 130

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H + ++  +   +  CNAL+  Y KCGS+     + +E  +K+EVS          
Sbjct: 131 TRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVS---------- 180

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+GL    R    L+  R M  +G +PN+VTISSI
Sbjct: 181 ---------------------WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSI 219

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +       K GKEIHG++++   + +I++A ++ID YAK+G    A  +F     R++
Sbjct: 220 LPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNI 279

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ YA +    +A+    +M   G  P+ VTFT VL ACA  G +    +I +A
Sbjct: 280 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI-HA 338

Query: 301 MSGQYGIQPS-------VEHYACMVGVLSRARRI 327
           M  + G+          ++ YA   G L  AR +
Sbjct: 339 MGVRIGLTSDLFVSNSLIDMYA-KCGCLHSARNV 371



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 32/243 (13%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D  T   VL+ C  S DI  GMEVH  V +     D+++ N L+ +Y  CG L+ AR L 
Sbjct: 9   DDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLF 68

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           DEM ++D V                               +WN +I  L  N  +    +
Sbjct: 69  DEMPERDVV-------------------------------SWNTIIGLLSVNGDYTEARN 97

Query: 161 LVREM-QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
               M   S ++PN V++ S+  + +   + +  + IH Y+VK   D  +    A++D Y
Sbjct: 98  YYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAY 157

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            K G +    +VF+    ++ + W +II+  A  G    A++ F  M++ G QP+ VT +
Sbjct: 158 GKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTIS 217

Query: 280 AVL 282
           ++L
Sbjct: 218 SIL 220



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   GV+ +  T   +  L S   ++  G E+HG   K  +D ++YV   ++  Y   GF
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLS 283
           L+ A+R+FD    R ++ W  II   + +GD ++A + +  M L + I+P+ V+  ++L 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 284 ACA 286
             A
Sbjct: 121 ISA 123


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 150/454 (33%), Positives = 258/454 (56%), Gaps = 33/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D++SW ++IAGY+Q   + E   LFR+ +    +  D + + SVL+AC       F
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHLEAINLFRK-VQVKGMDVDPMMIGSVLRACSGLKSRNF 468

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H +V +  +  D+ + NA++ +Y + G  DYAR   + +  KD VS          
Sbjct: 469 IREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVS---------- 517

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++I+  V N      L+L   ++ + ++P+++ I S 
Sbjct: 518 ---------------------WTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISA 556

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ S+LK GKEIHG+ ++  +     +A++++D YA  G +  ++++F   K R L
Sbjct: 557 LSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDL 616

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+WT++I+A   HG  ++A++LF +M +  + PD +TF A+L AC+HSGL+ +    F  
Sbjct: 617 ILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEI 676

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P  EHYACMV +LSR+  + EA +FV  MP+KPS++VW ALL    I  + E
Sbjct: 677 MKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKE 736

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     L + + +N+G Y +++N+++  GRW++ + VR +MK +GL K PG SWIE  
Sbjct: 737 LGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVD 796

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
             + +F+A+D S  +++ IYL L +   L+ ++G
Sbjct: 797 NKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKG 830



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 199/433 (45%), Gaps = 72/433 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN++++G  Q   Y +    FR+M NS   +PD V+V++++ A G+S +++ 
Sbjct: 309 MLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNS-AQKPDQVSVLNLIAASGRSGNLLN 367

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH + I + +  ++ I N LI MYAKC  + +     + M +KD +S++ II+GY  
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGY-- 425

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN  H   ++L R++Q  G+  + + I S+
Sbjct: 426 -----------------------------AQNECHLEAINLFRKVQVKGMDVDPMMIGSV 456

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S   +    +EIHGY  K R   +I +  AI++ Y + G    A+R F+  + + +
Sbjct: 457 LRACSGLKSRNFIREIHGYVFK-RDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDI 515

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI--F 298
           + WT++I+    +G   +A+ LF  +    IQPD +   + LSA A+   + K  +I  F
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGF 575

Query: 299 NAMSGQYGIQP----SVEHYACMVGVLSRARRI-------------------------SE 329
               G +   P     V+ YAC  G +  +R++                         +E
Sbjct: 576 LIRKGFFLEGPIASSLVDMYAC-CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNE 634

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEPENTGNYIIM 383
           A     KM    V P    + ALLY  S SG +  GK    +  + +++EP    +Y  M
Sbjct: 635 AIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE-HYACM 693

Query: 384 ANLYSQAGRWDEA 396
            +L S++   +EA
Sbjct: 694 VDLLSRSNSLEEA 706



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 143/290 (49%), Gaps = 34/290 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D VSWNS+I+ +   G   E  +LFR M    V   +  T V+ LQ     S +  
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGV-ASNTYTFVAALQGVEDPSFVKL 266

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GM +H   ++S+   D+++ NALI MYAKCG ++ A  +   M  +D VS++ ++     
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLL----- 321

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                     SGLVQN  +   L+  R+MQ S  +P+ V++ ++
Sbjct: 322 --------------------------SGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNL 355

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +      NL  GKE+H YA++N  D N+ +   +ID YAK   +      F+    + L
Sbjct: 356 IAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDL 415

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           I WT II+ YA +    +A++LF ++   G+  DP+   +VL AC  SGL
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGL 463



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 30/289 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M++R I +WN+M+  +   G Y E   L++EM    V   D  T  SVL+ACG   +   
Sbjct: 105 MTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGV-AIDACTFPSVLKACGALGESRL 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   ++      +++CNALI MY KCG L  AR L D +                 
Sbjct: 164 GAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGI----------------- 206

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                       +M++    +WN++IS  V   +    L L R MQ  GV  N  T  + 
Sbjct: 207 ------------MMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  S +K G  IHG A+K+ +  ++YVA A+I  YAK G +  A+RVF     R  
Sbjct: 255 LQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDY 314

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + W  ++S    +     A++ F +M N+  +PD V+   +++A   SG
Sbjct: 315 VSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSG 363



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 49/313 (15%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L  C     +  G ++H  +++SH+    ++   L+ MY KCGSL  A  + DEM+++ 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                                          + TWNA++   V + ++   ++L +EM+ 
Sbjct: 110 -------------------------------IFTWNAMMGAFVSSGKYLEAIELYKEMRV 138

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV  +A T  S+          + G EIHG AVK  +   ++V  A+I  Y K G L G
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGG 198

Query: 228 AQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           A+ +FD    +    + W +IISA+   G   +A+SLF  M   G+  +  TF A L   
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYA------CMVGVLSRARRISEATEFVSKMPV 339
                V           G +G      H+A       ++ + ++  R+ +A    + M  
Sbjct: 259 EDPSFVKLGM-------GIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLC 311

Query: 340 KPSAKVWGALLYG 352
           +     W  LL G
Sbjct: 312 RDYVS-WNTLLSG 323


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 256/469 (54%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWNS+++G S  G+   C   F  M      +P+ VT++SV+ AC     +  
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  +     + N+LI MY K G                             
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLG----------------------------- 270

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             F++ A  LF+ M    L +WN+++     N   E  +DL   M+ +G+ P+  T+ ++
Sbjct: 271 --FLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVAL 328

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +     +  + IH Y  +  ++ +I +ATA+++ YAK G L+ ++ +F+  K R  
Sbjct: 329 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 388

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+++ YA H    +A+ LF+ M+  G++ D VTFT +LSAC+HSGLV++    F  
Sbjct: 389 IAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEI 448

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  Y ++P ++HY+CMV +L R+ R+ +A E +  MP++PS+ VWGALL    + G+VE
Sbjct: 449 MSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVE 508

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V + L  ++P +  NYI+++N+YS AG W +A +VR  MKE  L + PG S+IE  
Sbjct: 509 LGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHG 568

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  FV  D    +S++I+  LE L+  +RE G       +L +++EE
Sbjct: 569 NKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEE 617



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 34/312 (10%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           V S++ A    + + +   +H  VI+S    D +I + L+ MY K G  + A+ L DEM 
Sbjct: 122 VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMP 181

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           +KD VS+++++SG    G++   ++ F  M+                             
Sbjct: 182 NKDLVSWNSLMSGLSGRGYLGACLNAFCRMR----------------------------- 212

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
              SG +PN VT+ S+ S  +    L  GK +HG  VK        V  ++I+ Y K GF
Sbjct: 213 -TESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF 271

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  A ++F+    RSL+ W +++  +  +G A K + LFN M   GI PD  T  A+L A
Sbjct: 272 LDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRA 331

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           C  +GL  +A  I +A   + G    +     ++ + ++  R++ + +   +  +K   +
Sbjct: 332 CTDTGLGRQAESI-HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEE--IKDRDR 388

Query: 345 V-WGALLYGASI 355
           + W A+L G ++
Sbjct: 389 IAWTAMLAGYAV 400


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 246/444 (55%), Gaps = 6/444 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +N+MI  Y     Y     + ++ML      +P   PD  T   V++ C        G +
Sbjct: 54  YNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXF-PDKFTFPFVVKXCAGLMCYNLGKQ 112

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH    +   K +  I N+L+ MY KC SLD A  + +EM+++D VS++ +ISG++  G 
Sbjct: 113 VHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQ 172

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F+ ++   + +W A++SG  +   H   L+  R MQ   +  + +++ S+   
Sbjct: 173 MRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPA 232

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ GK IH YA K  + R+I V  A+I+ YAK G +   +R+F +   R +I W
Sbjct: 233 CAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISW 292

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           + +I   A HG A +A+ LF EM    ++P+ +TF  +LSACAH+GL+++    F +M  
Sbjct: 293 STMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMER 352

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
              I+P VEHY C+V +L  + R+ +A E + KMP+KP + +WG L       G++E+  
Sbjct: 353 DDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVA 412

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
              +HL E+EP++TGNYI ++NLY+  G+WD   R+R+ M    + K PG S IE    +
Sbjct: 413 IAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDNMV 472

Query: 424 QSFVAKDTSGDKSEQIYLILERLL 447
           Q + + D S   S+ IY +L+ L+
Sbjct: 473 QEYASGDDSKPFSKAIYRVLKLLV 496



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 71/309 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M++RD VSWN++I+G+ + G     +A+F E+ +  +                       
Sbjct: 152 MTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFF 211

Query: 38  -------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                  +  D +++VSVL AC Q   +  G  +H +  ++    D+ +CNALI +YAK 
Sbjct: 212 RRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKR 271

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GS+D  R L  +M+++D +S+S +I G   HG   +A++LFQ                  
Sbjct: 272 GSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQ------------------ 313

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                        EMQ + V PN +T   + S  +H   L  G    GY      D NI 
Sbjct: 314 -------------EMQKAKVEPNIITFVGLLSACAHAGLLNEGL---GYFESMERDDNIE 357

Query: 211 VAT----AIIDTYAKTGFLHGAQRVFDRFKGR-SLIIWTAIISAYAAHGDASKAVSLFNE 265
                   +++    +G L  A  +  +   +    IW  + S+  +HG+          
Sbjct: 358 PGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEH 417

Query: 266 MLNNGIQPD 274
           +L   ++PD
Sbjct: 418 LLE--LEPD 424



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 51/295 (17%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-----SGVRPNAV 175
           HG  E A  LF+ +  P    +NA+I     N  +   + + ++M       +   P+  
Sbjct: 33  HGETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKF 92

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T   +    +       GK++HG+A K     N  +  ++++ Y K   L  A RVF+  
Sbjct: 93  TFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEM 152

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R  + W  +IS +   G   +A ++F E+ +  I     ++TA++S  A  G    A 
Sbjct: 153 TERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTI----FSWTAIVSGYARIGCHAVAL 208

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           + F  M               MV +        E  E +S + V P+    GAL  G  I
Sbjct: 209 EFFRRMQ--------------MVDI--------ELDE-ISLVSVLPACAQLGALELGKWI 245

Query: 356 SGDVELGKF-----VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
               +   F     VC+ L E+              Y++ G  DE  R+  +M E
Sbjct: 246 HIYADKAGFLRDICVCNALIEV--------------YAKRGSMDEGRRLFHKMNE 286


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 237/408 (58%), Gaps = 1/408 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSW +++ GY++ G  +E   LF  M+    +RP+ VT+V+ + A GQ   + F
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H +V E  +   + + NAL+ M+ KCG + YAR + D M  KD  S++++++ Y  
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF+ M R  + +W+ +I+   Q N+ E  + L REM A+GV P   T+ S+
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383

Query: 181 FSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +    L  G+ I+  Y V N+    + +  A+ID +AK G +  A ++FD    R+
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERN 443

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A+A HG + +A+ LF ++    I PD +TF  +L++C+HSGLV +    F 
Sbjct: 444 VVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFK 503

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   Y I+P VEHYACM+ +L +   + EA E    MP++     WGALL    + G+V
Sbjct: 504 EMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNV 563

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           E+G  V D L E++P ++G Y++M+ +Y+   +WD+   +R  M++ G
Sbjct: 564 EIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 12/286 (4%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-----K 135
           NAL+  YA   SLD A  + DEM ++D VS++ ++ GY   G  ++A  LF  M      
Sbjct: 182 NALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGM 241

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
           RP   T  A +S + Q       + L + +   GV  +    +++  +F     ++  +E
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301

Query: 196 I-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           +  G  VK     ++Y  T++++ YAK G L  A+++F     R+++ W+ +I+AY+   
Sbjct: 302 VFDGMEVK-----DVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
              +AV LF EM+  G+ P   T  +VLSACA  G +D    I+        I  +V   
Sbjct: 357 QPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLG 416

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
             ++ + ++   + EA++   +M  + +   W  ++   ++ G  E
Sbjct: 417 NALIDMFAKCGDVGEASKLFDEMAER-NVVSWNTMIMAHAVHGQSE 461


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 252/468 (53%), Gaps = 39/468 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSWN+MI+GY++ G Y+E   LF EM+   V RPD  T V+VL AC  S  I  G +
Sbjct: 159 KDVVSWNAMISGYAETGCYKEALELFEEMMKMNV-RPDESTYVTVLSACAHSGSIELGRQ 217

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH++V +     +L I NALI +Y+KCG                                
Sbjct: 218 VHSWVDDHGFDSNLKIVNALIDLYSKCGE------------------------------- 246

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           VE A  LFQ +    + +WN +I G    N ++  L L +EM  SG  PN VT+ S+   
Sbjct: 247 VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPA 306

Query: 184 FSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +H   +  G+ IH Y  K          + T++ID YAK G +  A +VF+    +SL 
Sbjct: 307 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+I  +A HG A  +  LF+ M   GI+PD +TF  +LSAC+HSG++D    IF +M
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 426

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           +  Y + P +EHY CM+ +L  +    EA E ++ M ++P   +W +LL    + G+VEL
Sbjct: 427 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVEL 486

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            +    +L +IEPEN  +YI+++N+Y+ AGRW++  R+R  +    + K+PG S IE   
Sbjct: 487 AESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDS 546

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            +  FV  D    ++ +IY +LE +  L+ E G+V     +L E+EEE
Sbjct: 547 VVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 594



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 197/400 (49%), Gaps = 6/400 (1%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+MI G++          L+  M++  +L P+  T   +L++C +S     G ++H  V
Sbjct: 32  WNTMIRGHALSSDPVSSLTLYVCMVSLGLL-PNSYTFPFLLKSCAKSKTFTEGQQIHGQV 90

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
           ++    +DL++  +LI MY +   L+ A  + D  S +D VSY+A+I+GY   G +  A 
Sbjct: 91  LKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQ 150

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  +    + +WNA+ISG  +   ++  L+L  EM    VRP+  T  ++ S  +H  
Sbjct: 151 KLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSG 210

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +++ G+++H +   + +D N+ +  A+ID Y+K G +  A  +F     + +I W  +I 
Sbjct: 211 SIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIG 270

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-GI 307
            Y       +A+ LF EML +G  P+ VT  +VL ACAH G +D    I   +  +  G+
Sbjct: 271 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGV 330

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG--DVELGKFV 365
             +      ++ + ++   I  A +  + M +  S   W A+++G ++ G  D     F 
Sbjct: 331 TNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRADASFDLFS 389

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
                 IEP++   ++ + +  S +G  D    +   M +
Sbjct: 390 RMRKIGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMTQ 428



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 44/290 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S +D++SWN++I GY+    Y+E   LF+EML S    P+ VT++SVL AC     I  
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSVLPACAHLGAIDI 315

Query: 61  GMEVHNFVIESHIKMDLWICNA------LIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G  +H + I+  +K    + NA      LI MYAKCG ++ A  + + M  K   S++A+
Sbjct: 316 GRWIHVY-IDKRLK---GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM 371

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I G+ +HG  + + DLF  M++ G+   +    GL+    H  +LDL R           
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRH---------- 421

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
                IF   +    +    E +G                +ID    +G    A+ + + 
Sbjct: 422 -----IFRSMTQDYKMTPKLEHYG---------------CMIDLLGHSGLFKEAEEMINT 461

Query: 235 FKGRSL-IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +     +IW +++ A   HG+   A S    ++   I+P+  +   +LS
Sbjct: 462 MEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIK--IEPENPSSYILLS 509



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 44/274 (16%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F+ ++ P    WN +I G   ++   + L L   M + G+ PN+ T   +    + 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
                 G++IHG  +K  +D ++YV T++I  Y +   L  A +VFDR   R ++ +TA+
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+ YA+ GD   A  LF+E+       D V++ A++S  A +G   +A ++F  M     
Sbjct: 137 ITGYASRGDIRSAQKLFDEI----PVKDVVSWNAMISGYAETGCYKEALELFEEM----- 187

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK--- 363
                                        KM V+P    +  +L   + SG +ELG+   
Sbjct: 188 ----------------------------MKMNVRPDESTYVTVLSACAHSGSIELGRQVH 219

Query: 364 -FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
            +V DH F+    N      + +LYS+ G  + A
Sbjct: 220 SWVDDHGFD---SNLKIVNALIDLYSKCGEVETA 250


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 256/489 (52%), Gaps = 32/489 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   ++  +N+MI G+   G+       +  ML    + P   T  S+++AC     +  
Sbjct: 97  MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMY-------------------------------AK 89
           G  VH  + +   +  L++  AL+  Y                               A+
Sbjct: 157 GQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALAR 216

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
            G +D AR L +EM +++  +++ +I GY   G VE A  LF  M    + +W  +I+  
Sbjct: 217 VGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCY 276

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            QN +++  L +  EM+ +G+ P+ VT+S++ S  +H   L+ GKEIH Y +    + ++
Sbjct: 277 SQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDV 336

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           Y+ +A++D YAK G L  +  +F +   ++L  W A+I   A HG A KA+ +F  M   
Sbjct: 337 YIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMERE 396

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            I P+ VTF ++LSAC H+GLVD+    F +M+  Y I+P + HY CMV +LS++  ++E
Sbjct: 397 KIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNE 456

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A E +  M  +P++ +WGALL G  + G+ E+ +   + L  +EP N+G+Y ++ ++Y++
Sbjct: 457 ALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAE 516

Query: 390 AGRWDEADRVREQMKESGL-AKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLG 448
              W E   +R  MKE G+  K PG SWIE  G +  F A   S   S++IY IL  L G
Sbjct: 517 EKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTELDG 576

Query: 449 LMREEGYVL 457
            ++  GY+L
Sbjct: 577 QLKLAGYIL 585


>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
          Length = 532

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 254/447 (56%), Gaps = 4/447 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           I +WNS+I G+S+G       ++F +ML   V  PD +T   V +A  + S++   + VH
Sbjct: 70  ISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVC-PDHLTYPFVAKAVARLSELRLALAVH 128

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             + +  +  D +I N+LI MY  CG +  AR + DEM  ++ VS++A++ GY   G ++
Sbjct: 129 CRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLD 188

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A  +F  M    + +W+++I G V+   +   L +   M+  G + N VT+ S+    +
Sbjct: 189 SAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACA 248

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGRSLIIW 243
           H   L+ G+ +H Y V N     + + T+++D YAK G +  A  VF         +++W
Sbjct: 249 HLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMW 308

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             II   A HG   +++ LF EM   GI PD +T+  + SACAH GLV +AW  F ++ G
Sbjct: 309 NTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSL-G 367

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           + G+ P  EHYACMV VLSRA +++EA +F+++MP++P+A + GALL G       +L +
Sbjct: 368 KQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAE 427

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V   L E+EP++ G YI ++N+Y+    WD A  +RE M+  G+ K PG S++E  G L
Sbjct: 428 RVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVLGTL 487

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLM 450
             F+A D + +  E+IY++L  ++  M
Sbjct: 488 HRFIAHDKTHNDLEKIYMMLNTIVRQM 514



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 36/189 (19%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+VSW+SMI G  +GG Y    A+F  M +  P  + + VT+VSVL AC     + 
Sbjct: 197 MPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGP--KANXVTMVSVLCACAHLGALE 254

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISG 117
            G  +H +++++ ++  L +  +L+ MYAKCG+++ A A+     M   D + ++ II G
Sbjct: 255 XGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGG 314

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
              HG V ++++LF                               +EMQ  G+ P+ +T 
Sbjct: 315 LATHGLVXESLELF-------------------------------KEMQVLGIVPDEITY 343

Query: 178 SSIFSLFSH 186
             +FS  +H
Sbjct: 344 LCLFSACAH 352



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           +S+SAI S     G ++ +  +F  +  P +S WN++I G  +       + +  +M   
Sbjct: 44  LSFSAISSW----GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRF 99

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           GV P+ +T   +    +  S L+    +H    K     + ++A ++I  Y   G +  A
Sbjct: 100 GVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSA 159

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           ++VFD    R+ + W A++  YA  GD   A  +F  M +     D V++++++  C   
Sbjct: 160 RKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDR----DVVSWSSMIDGCVKG 215

Query: 289 GLVDKAWDIFNAM 301
           G    A  IF  M
Sbjct: 216 GEYGVALAIFERM 228


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 248/452 (54%), Gaps = 5/452 (1%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH-N 66
           +W ++I  Y+  G   +  + +  M    V  P   T  ++  AC        G ++H  
Sbjct: 76  AWTALIRAYALRGPLSQALSFYSSMRKRRV-SPISFTFSALFSACAAVRHSALGAQLHAQ 134

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
            ++      DL++ NA+I MY KCGSL  AR + DEM ++D +S++ +I  Y   G +  
Sbjct: 135 TLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRA 194

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A DLF  +    + TW A+++G  QN      L++ R ++  GV  + VT+  + S  + 
Sbjct: 195 ARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQ 254

Query: 187 FSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               K    I   A  + +    N+ V +A+ID Y+K G +  A  VF   + R++  ++
Sbjct: 255 LGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYS 314

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++I  +A HG A  A+ LF +ML  G++P+ VTF  VL+AC+H+GLVD+   +F +M   
Sbjct: 315 SMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKC 374

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YG+ P+ E YACM  +LSRA  + +A + V  MP++    VWGALL  + + G+ ++ + 
Sbjct: 375 YGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEI 434

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL- 423
               LFE+EP+N GNY++++N Y+ AGRWD+  +VR+ ++E  L K PG SW+E   G+ 
Sbjct: 435 ASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMI 494

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             FVA D S  K  +I   L  LL  ++  GY
Sbjct: 495 HKFVAGDVSHPKINEIKKELNDLLERLKGIGY 526



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 8/200 (4%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+V+W +M+ GY+Q     +   +FR + +  V   D VT+V V+ AC Q     +   
Sbjct: 205 KDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGV-EIDEVTLVGVISACAQLGASKYANW 263

Query: 64  VHNFVIESHIKM--DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
           + +    S   +  ++ + +ALI MY+KCG+++ A  +   M +++  SYS++I G+ +H
Sbjct: 264 IRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIH 323

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GVRPNAVT 176
           G    A+ LF  M   G+   +    G++    H  ++D  +++ AS     GV P A  
Sbjct: 324 GRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAEL 383

Query: 177 ISSIFSLFSHFSNLKGGKEI 196
            + +  L S    L+   ++
Sbjct: 384 YACMTDLLSRAGYLEKALQL 403



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 35/310 (11%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF  +  P    W A+I            L     M+   V P + T S++FS  +   +
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 190 LKGGKEIHGYA-VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
              G ++H    +   +  ++YV  A+ID Y K G L  A+ VFD    R +I WT +I 
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIV 184

Query: 249 AYAAHGDASKAVSLFN-------------------------------EMLNNGIQPDPVT 277
           AY   GD   A  LF+                                + + G++ D VT
Sbjct: 185 AYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVT 244

Query: 278 FTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
              V+SACA  G    A W    A S  +G+  +V   + ++ + S+   + EA +    
Sbjct: 245 LVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKG 304

Query: 337 MPVKPSAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
           M  + +   + +++ G +I G      K   D L      N   ++ +    S AG  D+
Sbjct: 305 MRER-NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQ 363

Query: 396 ADRVREQMKE 405
             ++   M++
Sbjct: 364 GQQLFASMEK 373


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 152/430 (35%), Positives = 245/430 (56%), Gaps = 34/430 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R+IVSWN+MIA Y+      E      +M  +    P+ VT  +VL AC +   +  
Sbjct: 423 LDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC-PNAVTFTNVLPACARLGFLGP 481

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   +   +  DL++ N+LI MYAKCG L  AR + +  S KDEVSY+ +I GY  
Sbjct: 482 GKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGY-- 538

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                +  D  Q                          L+L  EM+  G +P+ V+   +
Sbjct: 539 ----SETDDCLQS-------------------------LNLFSEMRLLGKKPDVVSFVGV 569

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ + LK GKE+HG A++N    +++V+ +++D Y K G +  A R+F++   + +
Sbjct: 570 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV 629

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W  +I  Y   G+   A+S+F  M ++ +Q D V++ AVLSAC+H GLV++ W  F+ 
Sbjct: 630 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 689

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  Q  ++P+  HY CMV +L RA  + EA + + ++P+ P A +WGALL    I G+VE
Sbjct: 690 MLAQR-LEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 748

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   +HLFE++P++ G YI+++N+Y++ GRWDEA+++RE MK  G  K PG SW++  
Sbjct: 749 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIY 808

Query: 421 GGLQSFVAKD 430
             + +FVA++
Sbjct: 809 DQVHAFVAEE 818



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 163/334 (48%), Gaps = 40/334 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWN++I   S  G Y E +  +  M+   V++P+ V+V+S+L       D   
Sbjct: 220 MPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEM 279

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              +H + ++  +   +  CNAL+  Y KCGS+     + +E  +K+EVS          
Sbjct: 280 TRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVS---------- 329

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+GL    R    L+  R M  +G +PN+VTISSI
Sbjct: 330 ---------------------WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSI 368

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +       K GKEIHG++++   + +I++A ++ID YAK+G    A  +F     R++
Sbjct: 369 LPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNI 428

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I+ YA +    +A+    +M   G  P+ VTFT VL ACA  G +    +I +A
Sbjct: 429 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI-HA 487

Query: 301 MSGQYGIQPS-------VEHYACMVGVLSRARRI 327
           M  + G+          ++ YA   G L  AR +
Sbjct: 488 MGVRIGLTSDLFVSNSLIDMYA-KCGCLHSARNV 520



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 42/285 (14%)

Query: 4   RDIVSWNSMIAGYS---QGGF--YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           R    WN++I  +S    G F  +E    + R  +     + D  T   VL+ C  S DI
Sbjct: 121 RTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGV-----QLDDHTFPFVLKLCSDSFDI 175

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             GMEVH  V +     D+++ N L+ +Y  CG L+ AR L DEM ++D V         
Sbjct: 176 CKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVV--------- 226

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTI 177
                                 +WN +I  L  N  +    +    M   S ++PN V++
Sbjct: 227 ----------------------SWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSV 264

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+  + +   + +  + IH Y+VK   D  +    A++D Y K G +    +VF+    
Sbjct: 265 ISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVE 324

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           ++ + W +II+  A  G    A++ F  M++ G QP+ VT +++L
Sbjct: 325 KNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSIL 369



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 30/243 (12%)

Query: 46  VSVLQACGQSSDIVFGMEVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           +++L  C +   ++   +VH   ++   +   + +C +LI  YAK        +L ++  
Sbjct: 58  INLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTF 117

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
                ++                  L+  + R     WN    G    NR          
Sbjct: 118 QNCRTAF------------------LWNTLIRAHSIAWNGTFDGFETYNR---------- 149

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   GV+ +  T   +  L S   ++  G E+HG   K  +D ++YV   ++  Y   GF
Sbjct: 150 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 209

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLS 283
           L+ A+R+FD    R ++ W  II   + +GD ++A + +  M L + I+P+ V+  ++L 
Sbjct: 210 LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 269

Query: 284 ACA 286
             A
Sbjct: 270 ISA 272



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 83/184 (45%), Gaps = 6/184 (3%)

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDR-FK 236
           ++ +L S   +L   K++H   + N +  R++ +  ++I  YAK         +F++ F+
Sbjct: 59  NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQ 118

Query: 237 G-RSLIIWTAIISAYA-AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
             R+  +W  +I A++ A          +N M+  G+Q D  TF  VL  C+ S  + K 
Sbjct: 119 NCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKG 178

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            ++ + +  + G    V     ++ +      +++A     +MP +     W  ++   S
Sbjct: 179 MEV-HGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVS-WNTIIGLLS 236

Query: 355 ISGD 358
           ++GD
Sbjct: 237 VNGD 240


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 244/455 (53%), Gaps = 32/455 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           + RD++SWN++++G+      +    +F +ML +    P+  T +S+L++C   SD+  G
Sbjct: 493 TNRDLISWNALLSGFHDNETCDTGLRIFNQML-AEGFNPNMYTFISILRSCSSLSDVDLG 551

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH  ++++ +  + ++  AL+ MYAK                               +
Sbjct: 552 KQVHAQIVKNSLDGNDFVGTALVDMYAK-------------------------------N 580

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
            F+E A  +F  + +  L  W  +++G  Q+ + E  +    +MQ  GV+PN  T++S  
Sbjct: 581 RFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSL 640

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  S  + L  G+++H  A+K     +++VA+A++D YAK G +  A+ VFD    R  +
Sbjct: 641 SGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV 700

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W  II  Y+ HG   KA+  F  ML+ G  PD VTF  VLSAC+H GL+++    FN++
Sbjct: 701 SWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSL 760

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           S  YGI P++EHYACMV +L RA +  E   F+ +M +  +  +W  +L    + G++E 
Sbjct: 761 SKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEF 820

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G+     LFE+EPE   NYI+++N+++  G WD+   VR  M   G+ K PG SW+E +G
Sbjct: 821 GERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNG 880

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            +  F++ D S  K  +I+L L+ L   +   GY 
Sbjct: 881 QVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYT 915



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 137/288 (47%), Gaps = 32/288 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+VSW+++I    Q G   E   +F+ M +S V+ P+  T+ S++ A     D+ +G  +
Sbjct: 395 DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI-PNQFTLASLVSAATDLGDLYYGESI 453

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V +   + D  +CNAL+ MY K GS                               V
Sbjct: 454 HACVCKYGFEYDNTVCNALVTMYMKIGS-------------------------------V 482

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +    +F+      L +WNA++SG   N   +  L +  +M A G  PN  T  SI    
Sbjct: 483 QDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSC 542

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S  S++  GK++H   VKN  D N +V TA++D YAK  FL  A+ +F+R   R L  WT
Sbjct: 543 SSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 602

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
            I++ YA  G   KAV  F +M   G++P+  T  + LS C+    +D
Sbjct: 603 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLD 650



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 167/365 (45%), Gaps = 44/365 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K++ VSWN+++ G++Q G  E+   LF  M  S +      T+ +VL+ C  S ++  
Sbjct: 290 MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEI-NFSKFTLSTVLKGCANSGNLRA 348

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+  I    ++D +I   L+ MY+KCG                             
Sbjct: 349 GQIVHSLAIRIGCELDEFISCCLVDMYSKCG----------------------------- 379

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                 A+ +F  ++ P + +W+A+I+ L Q  +     ++ + M+ SGV PN  T++S+
Sbjct: 380 --LAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASL 437

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L  G+ IH    K  ++ +  V  A++  Y K G +    RVF+    R L
Sbjct: 438 VSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDL 497

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAW 295
           I W A++S +  +      + +FN+ML  G  P+  TF ++L +C+    VD      A 
Sbjct: 498 ISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 557

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            + N++ G   +  +      +V + ++ R + +A    +++ +K     W  ++ G + 
Sbjct: 558 IVKNSLDGNDFVGTA------LVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQ 610

Query: 356 SGDVE 360
            G  E
Sbjct: 611 DGQGE 615



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 33/303 (10%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L+ C    D+  G  +H  VI+S I  D  + N+L+ +YAKCGS +YA  +  E+ ++D
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
            VS++A+I+G++  G+   A++LF  M+R                               
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRR------------------------------- 222

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GV  N  T ++     S   +L+ GK++H  A+K     +++V +A++D YAK G +  
Sbjct: 223 EGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVL 282

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+RVF     ++ + W A+++ +A  GDA K ++LF  M  + I     T + VL  CA+
Sbjct: 283 AERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCAN 342

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
           SG + +A  I ++++ + G +       C+V + S+     +A +   ++   P    W 
Sbjct: 343 SGNL-RAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWS 400

Query: 348 ALL 350
           A++
Sbjct: 401 AII 403



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 32/289 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+VSW ++I G+   G+      LF EM    V   +  T  + L+AC    D+ F
Sbjct: 189 IPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV-EANEFTYATALKACSMCLDLEF 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH   I+     DL++ +AL+ +YAKCG +  A  +                     
Sbjct: 248 GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERV--------------------- 286

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                     F  M +    +WNA+++G  Q    E VL+L   M  S +  +  T+S++
Sbjct: 287 ----------FLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTV 336

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++  NL+ G+ +H  A++   + + +++  ++D Y+K G    A +VF R +   +
Sbjct: 337 LKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDV 396

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + W+AII+     G + +A  +F  M ++G+ P+  T  +++SA    G
Sbjct: 397 VSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG 445


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 261/469 (55%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V+W++M+AG+   G   +   ++R M    V + D V ++ V+QAC  + ++  
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV-KGDEVVMIGVIQACTAARNVRM 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++   ++MD+    +L+ MYAK G LD A  +   M  +++VS          
Sbjct: 228 GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS---------- 277

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+ISG  QN + +  L L R MQASG++P++  + S 
Sbjct: 278 ---------------------WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSA 316

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+   LK G+ +HG+ V+ R+D N  + TA ID Y+K G L  AQ +F+    R L
Sbjct: 317 LLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDL 375

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W A+I+   AHG    A++LF EM   G++PD  TF ++LSA +HSGLV++    F  
Sbjct: 376 ILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGR 435

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I P+ +HY C+V +L+R+  + EA++ ++ M  +P+  +W ALL G   +  +E
Sbjct: 436 MVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLE 495

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ + D++ E++P++ G   +++NLY+   +WD+  +VR+ MK+SG  K+PG S IE  
Sbjct: 496 LGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIR 555

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G    FV +D S  + E+I   + +L   MR+ GY+     +  ++EEE
Sbjct: 556 GTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE 604



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 60/115 (52%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RP++ T +   S  +   +L+GG+ +   A    Y  +++V ++++  YA+ G +  A +
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           VF R   R  + W+ +++ + + G    A+ ++  M  +G++ D V    V+ AC
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 246/454 (54%), Gaps = 34/454 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP-DGVTVVSVLQACGQSSDIVFGM 62
           + +++WN+MIAGY + G ++E   +F+ ML   V  P D VT++SV  ACG+  D   G 
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLE--VRAPFDEVTLLSVATACGRLGDANLGQ 292

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +  +  E  +     +  AL+ MYAKCG LD AR                         
Sbjct: 293 WIAEYAEEKGMLRSRNLATALVDMYAKCGELDKAR------------------------- 327

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                  LF  M    +  W+A+ISG  Q++R    L +  EMQ + V PN VT+ S+ S
Sbjct: 328 ------RLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLS 381

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L+ GK +H Y  +      + + TA++D YAK G +  A + F+    R+   
Sbjct: 382 ACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWT 441

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I   A++G + +A+ LF+ ML   I+P  VTF  VL AC+H  LV++    F +M+
Sbjct: 442 WTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMT 501

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             YGI P +EHY CMV +L RA  I EA +F+  MP++P+A VW ALL   ++  +VE+G
Sbjct: 502 QDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIG 561

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     +  ++P ++GNYI+++N Y+  G+W  A  VR++MKE G+ KIPG S IE  G 
Sbjct: 562 EEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGT 621

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  F A+D+   +  +IY  +  ++  ++  GY+
Sbjct: 622 IFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYI 655



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 35/355 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R   S+N +I  + + G  E+   LF EML+   + PD  TV + +++C +  D+  G  
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V  +  +    +D ++ N+LI MYA CG                                
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGD------------------------------- 221

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V  A  LF  ++  G+  WNA+I+G V+N   + V+++ + M       + VT+ S+ + 
Sbjct: 222 VVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATA 281

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +   G+ I  YA +    R+  +ATA++D YAK G L  A+R+FDR   R ++ W
Sbjct: 282 CGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAW 341

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMS 302
           +A+IS Y       +A+++FNEM    + P+ VT  +VLSACA  G ++   W   ++  
Sbjct: 342 SAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKW--VHSYI 399

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +  +  +V     +V   ++   I +A +    MPV+ +   W AL+ G + +G
Sbjct: 400 RRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALIKGMASNG 453



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 123/276 (44%), Gaps = 36/276 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+W++MI+GY+Q     E  A+F EM  + V  P+ VT+VSVL AC     +  
Sbjct: 333 MHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEV-NPNDVTMVSVLSACAVLGALET 391

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++    + + + +  AL+  YAKCG +  A    + M  ++  +++A+I G   
Sbjct: 392 GKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMAS 451

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++LF  M    +   +    G++    H  +++  R                 
Sbjct: 452 NGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRR---------------- 495

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA-QRVFDRFKGRS 239
                HF+++        Y +  R +        ++D   + G +  A Q + +     +
Sbjct: 496 -----HFTSM-----TQDYGICPRIEHY----GCMVDLLGRAGLIDEAYQFIRNMPIEPN 541

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            ++W A++SA   H    K V +  E L   +  DP
Sbjct: 542 AVVWRALLSACTVH----KNVEIGEEALKQIVPLDP 573



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 47/319 (14%)

Query: 127 AMDLFQVMKRPGLS--TWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSL 183
           A+ LF++   P  S  ++N +I   ++    E  L L  EM   + V P+  T+++    
Sbjct: 121 AIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKS 180

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +L  G+ +  YA K  +  + +V  ++I  YA  G +  A  +F   + + +I W
Sbjct: 181 CSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAW 240

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC------------------ 285
            A+I+ Y  +GD  + V +F  ML      D VT  +V +AC                  
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEE 300

Query: 286 -----------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
                            A  G +DKA  +F+ M  +      V  ++ M+   +++ R  
Sbjct: 301 KGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSR-----DVVAWSAMISGYTQSDRCR 355

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENTGNYIIMA 384
           EA    ++M    V P+     ++L   ++ G +E GK+V  ++   + P        + 
Sbjct: 356 EALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALV 415

Query: 385 NLYSQAGRWDEADRVREQM 403
           + Y++ G   +A +  E M
Sbjct: 416 DFYAKCGCIKDAVKAFESM 434


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 260/456 (57%), Gaps = 34/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSW  +I+GYSQ G   E  ALF +ML+    +P+  T+ S+L+A G       
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHH 224

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F ++    M++ + ++L+ MYA+   +  A+ + + ++ K+ VS          
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS---------- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+I+G  +    E V+ L  +M   G  P   T SS+
Sbjct: 275 ---------------------WNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSV 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  S L+ GK +H + +K+      Y+   +ID YAK+G +  A++VF R   + +
Sbjct: 314 LACASSGS-LEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDI 372

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W +IIS YA HG  ++A+ LF +ML   +QP+ +TF +VL+AC+HSGL+D+    F  
Sbjct: 373 VSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFEL 432

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ I+  V H+  +V +L RA R++EA +F+ +MP+KP+A VWGALL    +  +++
Sbjct: 433 MK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMD 491

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG +  + +FE++P ++G +++++N+Y+ AGR  +A +VR+ MKESG+ K P  SW+E  
Sbjct: 492 LGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIE 551

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D S    E+I  + E++ G ++E GYV
Sbjct: 552 NEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYV 587



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 198/420 (47%), Gaps = 72/420 (17%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           +++N   L P+      +L  C     +  G  +H  +  S  + DL + N ++ MYAKC
Sbjct: 94  DLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC 153

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           GSL+ A+ L D+M  KD VS++ +ISGY   G   +A+ LF  M                
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM---------------- 197

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                   L L       G +PN  T+SS+        +   G+++H +++K  YD N++
Sbjct: 198 --------LHL-------GFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVH 242

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V ++++D YA+   +  A+ +F+    ++++ W A+I+ +A  G+    + LF +ML  G
Sbjct: 243 VGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQG 302

Query: 271 IQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQP-------SVEHYACMVGVLS 322
            +P   T+++VL ACA SG +++  W   +A   + G QP        ++ YA   G + 
Sbjct: 303 FEPTHFTYSSVL-ACASSGSLEQGKW--VHAHVIKSGGQPIAYIGNTLIDMYA-KSGSIK 358

Query: 323 RARRI-------------------------SEATEFVSKM---PVKPSAKVWGALLYGAS 354
            A+++                         +EA +   +M    V+P+   + ++L   S
Sbjct: 359 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 418

Query: 355 ISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            SG ++ G++  + + + + E    +++ + +L  +AGR +EA++  E+M     A + G
Sbjct: 419 HSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWG 478



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 5/203 (2%)

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
           VLDL+       + P     S + +  ++   LK G+ IH +   + ++ ++ +   I++
Sbjct: 92  VLDLI---NCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILN 148

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YAK G L  AQ +FD+   + ++ WT +IS Y+  G AS+A++LF +ML+ G QP+  T
Sbjct: 149 MYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT 208

Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
            +++L A   +G  D      +A S +YG   +V   + ++ + +R   + EA    + +
Sbjct: 209 LSSLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 338 PVKPSAKVWGALLYGASISGDVE 360
             K +   W AL+ G +  G+ E
Sbjct: 268 AAK-NVVSWNALIAGHARKGEGE 289


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 266/471 (56%), Gaps = 8/471 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSW S++  Y+Q     +  ++F  M  +  L+PD     ++L+AC     +  
Sbjct: 63  MPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRL 122

Query: 61  GMEVH-NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G +VH  FV+   +  D+ + ++L+ MYAKCG    AR++ D +  K  VS++A++SGY 
Sbjct: 123 GKQVHARFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYA 181

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTIS 178
             G  ++AM+LF       L +W A+ISGLVQ+        +  EM+  GV   + + +S
Sbjct: 182 RSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLS 241

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    ++ + L  GK+IHG  + + Y+  ++++ A++D YAK   +  A+ VF+R   R
Sbjct: 242 SVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHR 301

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ WT+II   A HG A +A+ L+++M+   I+P+ VTF  ++ AC+H+GLV K   +F
Sbjct: 302 DVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLF 361

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            AM   Y I PS++ + C + +LSR+  ++EA + +  MP KP    W ALL      G+
Sbjct: 362 KAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGN 421

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            E+G  + D L  +       Y++++N+Y+ AG+W++  RVR+ M +  + + PG S I+
Sbjct: 422 TEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSID 481

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
                Q F A +T     ++I+ +L+ L   MR+ GY+     +L ++EE+
Sbjct: 482 LGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQ 532



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 185/483 (38%), Gaps = 112/483 (23%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE 108
           L+ C +    +   ++H  +++S +     + N L+  Y KC  L  A  L DEM  +D 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           VS+++I++ Y       K + +F  M                                  
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYM------------------------------FTTD 98

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
            ++P+    +++    +   +L+ GK++H   V + +  +  V ++++D YAK G    A
Sbjct: 99  RLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIA 158

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN------------------------ 264
           + VFD    ++ + WTA++S YA  G   +A+ LF                         
Sbjct: 159 RSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCI 218

Query: 265 -------EMLNNGIQ-PDPVTFTAVLSACAH----------SGLV-----DKAWDIFNAM 301
                  EM   G+   DP+  ++V+ ACA+           GLV     +    I NA+
Sbjct: 219 DGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNAL 278

Query: 302 SGQYG---------------IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSA 343
              Y                +   V  +  ++   ++  R  EA +   +M    +KP+ 
Sbjct: 279 VDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNE 338

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVR 400
             +  L+Y  S +G V  G+ +   + E   I P +   +    +L S++G  +EA+ + 
Sbjct: 339 VTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISP-SLQLFTCFLDLLSRSGHLNEAEDLI 397

Query: 401 EQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE--GYVLL 458
           + M      K    +W        + ++       +E    I +RLL L   E   YVLL
Sbjct: 398 KTMPH----KPDEPTW-------AALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLL 446

Query: 459 DEV 461
             V
Sbjct: 447 SNV 449


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 268/491 (54%), Gaps = 25/491 (5%)

Query: 1   MSKRDIVSWNSMI---AGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD 57
           M + +   WN+++   A  +      E   LF  ML    ++P+  T  SVL+AC ++S 
Sbjct: 78  MPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL---------------LDE 102
           +  G ++H  +++     D ++ + L+ MY  C  ++ A +L               LD+
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197

Query: 103 M-SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
              D + V ++ +I G +  G ++ A +LF  M +  + +WN +ISG  QN      ++L
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINL 257

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
            +EMQ+S + PN VT+ S+    +    L+ GK IH YA KN+ + +  + +A++D Y+K
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSK 317

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G +  A +VF+    R+ I W+AII A+A HG A  A+  F+ M   G+ P+ V +  +
Sbjct: 318 CGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGI 377

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           LSAC+H+GLV++    F+ M    G+QP +EHY CMV +L RA  + EA E +  MP++P
Sbjct: 378 LSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEP 437

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
              +W ALL    +  ++++G+ V + L E+ P ++G+Y+ ++NLY+  G W+   RVR 
Sbjct: 438 DDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRL 497

Query: 402 QMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------ 455
           +MK   + K PG SWIE  G +  F+ +D S  K+++I  +L  +   +R  GY      
Sbjct: 498 KMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLE 557

Query: 456 VLLDEVEEESA 466
           V L+  E+E A
Sbjct: 558 VFLNTDEQERA 568


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 157/497 (31%), Positives = 273/497 (54%), Gaps = 45/497 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V+WN +I+GY Q G  E+   +  +++    L+ D VT+ +++    ++ +   
Sbjct: 146 MIGKDVVTWNLLISGYVQQGLVEDAIRMC-QLMRLEKLKFDCVTLSTLMSTAARTQNSKL 204

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV  + I    + D+ + +A + MYAKCGS+  A+ + D    KD + ++ +++ Y  
Sbjct: 205 GKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAE 264

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVI------------------------------ 146
            G   +A+ LF  M+     P + TWN +I                              
Sbjct: 265 SGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGIVPTIVS 324

Query: 147 -----SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                +GLV N   E  +  +R+MQ SG+RPN  +I+   S  ++ ++L  G+ +HGY +
Sbjct: 325 WTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSVHGYII 384

Query: 202 KNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +NR +  ++ + T+++D YAK G +  A++VF R     L ++ A+ISAYA +G+  +A+
Sbjct: 385 RNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAM 444

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           +L+  + + GI+PD +TFT +LSAC H+G +++A +IF+ M  ++G++P +EHY  MV +
Sbjct: 445 ALYGSLEDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDL 504

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L+ A    +A   + +MP +P A++  +LL   +     EL +++   L E EP+N+GNY
Sbjct: 505 LASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNY 564

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS----GGLQSFVAKDTSGDKS 436
           + ++N Y+  G WDE  ++RE MK  GL K PG SWI         +Q FVA D +  ++
Sbjct: 565 VTISNAYAGEGSWDEVVKMREMMKAKGLKKQPGCSWIRVKREEEEXVQVFVANDKTHLRN 624

Query: 437 EQIYLILERLLGLMREE 453
            +I  +L  LL  MR +
Sbjct: 625 NEIRRMLALLLXDMRSD 641



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 193/404 (47%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    V  P  VTV + L A      +  
Sbjct: 45  IPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGV-EPTRVTVSTCLSASANMGGVEE 103

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H   + + +++D  +  +++  Y K G +DYA  + D M  KD V           
Sbjct: 104 GKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVFDRMIGKDVV----------- 152

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    E  + + + M+   ++ + VT+S++
Sbjct: 153 --------------------TWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTL 192

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   N K GKE+  Y +++ ++ +I +A+A +D YAK G +  A++VFD    + L
Sbjct: 193 MSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDL 252

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF EM    + P+ +T+  ++ +   +G VD+A ++F  
Sbjct: 253 ILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKEMFLQ 312

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  L       EA  ++ KM    ++P+       L   +   
Sbjct: 313 MQSS-GIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLA 371

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            +  G+ V  ++      ++   I   + ++Y++ G   +A++V
Sbjct: 372 SLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKV 415



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 174/374 (46%), Gaps = 53/374 (14%)

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           FG  VH +V +S +   +++ ++L  MY KCG LD AR + DE+ +++ V+         
Sbjct: 2   FGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA--------- 52

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 WNA++ G VQN  +E  + L+ +M+  GV P  VT+S+
Sbjct: 53  ----------------------WNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVST 90

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S  ++   ++ GK  H  AV N  + +  + T+I++ Y K G +  A+ VFDR  G+ 
Sbjct: 91  CLSASANMGGVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVFDRMIGKD 150

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKA 294
           ++ W  +IS Y   G    A+ +   M    ++ D VT + ++S  A +     G   + 
Sbjct: 151 VVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQC 210

Query: 295 WDIFNAMSGQYGI-QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           + I ++      +   +V+ YA   G +  A+++ ++T       V+    +W  LL   
Sbjct: 211 YCIRHSFESDIVLASAAVDMYA-KCGSIVDAKKVFDST-------VQKDLILWNTLLAAY 262

Query: 354 SISG-DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
           + SG   E  +   +   E  P N  T N II++ L  + G+ DEA  +  QM+ SG+  
Sbjct: 263 AESGLSGEALRLFYEMQLESVPPNVITWNLIILSLL--RNGQVDEAKEMFLQMQSSGI-- 318

Query: 411 IPG-RSWIECSGGL 423
           +P   SW     GL
Sbjct: 319 VPTIVSWTTMMNGL 332


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 256/474 (54%), Gaps = 39/474 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++ +WN+ ++   Q G   +  A F++ L      P+ +T  + L AC     +  
Sbjct: 170 MPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDG-EPNAITFCAFLNACADIVSLEL 228

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F++ S  + D+ + N LI  Y KCG +              E+ +S I SG   
Sbjct: 229 GRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIV-----------SSELVFSRIGSG--- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                          R  + +W ++++ LVQN+  E    +  + +   V P    ISS+
Sbjct: 275 ---------------RRNVVSWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSV 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ G+ +H  A+K   + NI+V +A++D Y K G +  A++VF     R+L
Sbjct: 319 LSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNL 378

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + W A+I  YA  GD   A+SLF EM +   GI    VT  +VLSAC+ +G V++   IF
Sbjct: 379 VTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIF 438

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +M G+YGI+P  EHYAC+V +L R+  +  A EF+ +MP+ P+  VWGALL    + G 
Sbjct: 439 ESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGK 498

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +LGK   + LFE++P+++GN+++ +N+ + AGRW+EA  VR++M++ G+ K  G SW+ 
Sbjct: 499 TKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVA 558

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEESA 466
               +  F AKD+  +K+ +I  +L +L G M++ GYV      L D  EEE A
Sbjct: 559 VKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKA 612



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 166/363 (45%), Gaps = 37/363 (10%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           + R +V+W S+I+G      +      F  M    VL P+  T   V +A       V G
Sbjct: 70  NPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVL-PNDFTFPCVFKASASLHMPVTG 128

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H   ++    +D+++  +   MY+K G    AR + DEM  ++              
Sbjct: 129 KQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRN-------------- 174

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                            L+TWNA +S  VQ+ R    +   ++       PNA+T  +  
Sbjct: 175 -----------------LATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFL 217

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS 239
           +  +   +L+ G+++HG+ V++RY  ++ V   +ID Y K G +  ++ VF R     R+
Sbjct: 218 NACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRN 277

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W ++++A   + +  +A  +F +     ++P     ++VLSACA  G ++    + +
Sbjct: 278 VVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSV-H 335

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           A++ +  ++ ++   + +V +  +   I  A +   +MP + +   W A++ G +  GDV
Sbjct: 336 ALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPER-NLVTWNAMIGGYAHLGDV 394

Query: 360 ELG 362
           ++ 
Sbjct: 395 DMA 397



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 193 GKEIHGYAVKNRYDRNI--YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
           G+ +H + ++  +D  +  ++   +++ Y+K    + AQ V      R+++ WT++IS  
Sbjct: 26  GRAVHAHILRT-HDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGC 84

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             +   + A+  F+ M    + P+  TF  V  A A
Sbjct: 85  VHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASA 120


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 246/469 (52%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++VSW ++I+GY   G + E   +FR +L    L PD  T+V VL AC Q  D+  
Sbjct: 173 IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMN-LAPDSFTIVRVLSACTQLGDLNS 231

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  ++E  +  ++++  +L+ MYAKCG++                           
Sbjct: 232 GEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNM--------------------------- 264

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               EKA  +F  M    + +W A+I G   N   +  +DL  +MQ   V+P+  T+  +
Sbjct: 265 ----EKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGV 320

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ G+ + G   +N +  N  + TA+ID YAK G +  A  VF   K +  
Sbjct: 321 LSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDR 380

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W AIIS  A +G    +  LF ++   GI+PD  TF  +L  C H+GLVD+    FN+
Sbjct: 381 VVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNS 440

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + + PS+EHY CMV +L RA  + EA + +  MP++ +A VWGALL    I  D +
Sbjct: 441 MYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQ 500

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +     L E+EP N+GNY++++N+YS   +WDEA +VR  M E  + K PG SWIE  
Sbjct: 501 LAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVD 560

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G +  F+  D     SE+IY  L+ L   M+  GYV     +L ++EEE
Sbjct: 561 GIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEE 609



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 200/444 (45%), Gaps = 79/444 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + +I  WN+MI G      +++    F  ++ S    P+  T   VL+AC +  D+  
Sbjct: 72  IKQPNIFLWNTMIRGLVSNDCFDDAIE-FYGLMRSEGFLPNNFTFPFVLKACARLLDLQL 130

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  V++     D+++  +L+ +YAKCG L+ A  + D++ DK+ VS          
Sbjct: 131 GVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVS---------- 180

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A+ISG +   +    +D+ R +    + P++ TI  +
Sbjct: 181 ---------------------WTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRV 219

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   +L  G+ IH   ++    RN++V T+++D YAK G +  A+ VFD    + +
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----------SGL 290
           + W A+I  YA +G   +A+ LF +M    ++PD  T   VLSACA           SGL
Sbjct: 280 VSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGL 339

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE------------------ 332
           VD+   ++N + G       ++ YA   G +SRA  + +  +                  
Sbjct: 340 VDRNEFLYNPVLG----TALIDLYA-KCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNG 394

Query: 333 ----------FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
                      V K+ +KP    +  LL G + +G V+ G+   + +   F + P +  +
Sbjct: 395 YVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTP-SIEH 453

Query: 380 YIIMANLYSQAGRWDEADRVREQM 403
           Y  M +L  +AG  DEA ++   M
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNM 477



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 5/248 (2%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF  +K+P +  WN +I GLV N+  +  ++    M++ G  PN  T   +    +   +
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L+ G +IH   VK  +D +++V T+++  YAK G+L  A +VFD    ++++ WTAIIS 
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           Y   G   +A+ +F  +L   + PD  T   VLSAC   G ++    I   +  + G+  
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIM-EMGMVR 246

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL 369
           +V     +V + ++   + +A      MP K     WGA++ G +++G   L K   D  
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS-WGAMIQGYALNG---LPKEAIDLF 302

Query: 370 FEIEPENT 377
            +++ EN 
Sbjct: 303 LQMQRENV 310


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 251/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++++W ++I+G  Q   Y +   LF EM N  ++ P+ +T +S L AC     +  
Sbjct: 120 MLERNVITWTAIISGLVQSELYRDSLRLFVEMTNG-LVEPNSLTYLSSLMACSGLQALRE 178

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V +  ++ D  + +AL+ MY+KCGS+     + +     D+VS + I++G+  
Sbjct: 179 GCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQ 238

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF E                              EA+   V+ ++A G   ++  +S++
Sbjct: 239 NGFEE------------------------------EAMQFFVKMLEA-GTEIDSNMVSAV 267

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +F   ++L  G++IH   +K  +  N +V   +I+ Y+K G L  + +VF R    + 
Sbjct: 268 LGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNS 327

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++I+A+A HGD S+A+ L+ EM   G++P  VTF ++L AC+H GLV+K  +   +
Sbjct: 328 VSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKS 387

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  + + P +EHYAC+V +L RA  ++EA  F+  +P+KP   VW ALL    I GD E
Sbjct: 388 MTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPE 447

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  +HL    PE    YI++AN+YS  GRW E  +  ++MKE  +AK  G SWIE  
Sbjct: 448 MGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKERAKTIKRMKEMCVAKETGISWIEIE 507

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             L SFV +D    ++E IY +L  L G M +EGYV
Sbjct: 508 NNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDEGYV 543



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 158/359 (44%), Gaps = 35/359 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN MI+G+ + G ++     F++M +    R D  T+ ++L AC +      
Sbjct: 18  MPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILSACDRPELGFV 77

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              VH   + +  + ++ + NALI  Y KCG       + DEM +++ ++++AI      
Sbjct: 78  NKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAI------ 131

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                    ISGLVQ+  +   L L  EM    V PN++T  S 
Sbjct: 132 -------------------------ISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSS 166

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    L+ G +IHG   K     +  V +A++D Y+K G +    ++F+       
Sbjct: 167 LMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDK 226

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN- 299
           +  T I++ +A +G   +A+  F +ML  G + D    +AVL        +     I + 
Sbjct: 227 VSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSL 286

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +   +G  P V +   ++ + S+   + ++T+  S+MP   S   W +++   +  GD
Sbjct: 287 VIKRSFGSNPFVGN--GLINMYSKCGDLEDSTKVFSRMPCMNSVS-WNSMIAAFARHGD 342



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 30/201 (14%)

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
           MYAK G L  A  L DEM  +D VS++ +ISG++  G  +     F+ M+  G       
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGF------ 54

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
                                    R +  T+++I S           K +H  AV N +
Sbjct: 55  ------------------------YRLDQATLTTILSACDRPELGFVNKMVHCLAVLNGF 90

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
            R I V  A+I +Y K GF     +VFD    R++I WTAIIS          ++ LF E
Sbjct: 91  QREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVE 150

Query: 266 MLNNGIQPDPVTFTAVLSACA 286
           M N  ++P+ +T+ + L AC+
Sbjct: 151 MTNGLVEPNSLTYLSSLMACS 171


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 248/465 (53%), Gaps = 37/465 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+WN+M+AGY+Q     +   LF  +++    R D  T+ +V + CG    I  G +V
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H + I+S   +DLW+ + ++ MY KCG +  A+   D +   D+V+              
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA-------------- 585

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                            W  +ISG ++N   E    +  +M+  GV P+  TI+++    
Sbjct: 586 -----------------WTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S  + L+ G++IH  A+K     + +V T+++D YAK G +  A  +F R +  ++  W 
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A++   A HG+  + + LF +M + GI+PD VTF  VLSAC+HSGLV +A+    +M G 
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YGI+P +EHY+C+   L RA  + +A   +  M ++ SA ++  LL    + GD E GK 
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L E+EP ++  Y++++N+Y+ A +WDE    R  MK   + K PG SWIE    + 
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
            FV  D S  ++E IY  ++ ++  +++EGYV      L +VEEE
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEE 913



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 38/360 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IV 59
           MS+RD++SWNS+IAG +Q G   E   LF ++L    L+PD  T+ SVL+A     + + 
Sbjct: 376 MSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG-LKPDQYTMTSVLKAASSLPEGLS 434

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              +VH   I+ +   D ++  ALI  Y++   +  A  L +                  
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER----------------- 477

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            H F               L  WNA+++G  Q++     L L   M   G R +  T+++
Sbjct: 478 -HNF--------------DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +F        +  GK++H YA+K+ YD +++V++ I+D Y K G +  AQ  FD      
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF- 298
            + WT +IS    +G+  +A  +F++M   G+ PD  T   +  A +    +++   I  
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 642

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           NA+       P V     +V + ++   I +A     ++ +  +   W A+L G +  G+
Sbjct: 643 NALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGE 699



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 147/330 (44%), Gaps = 50/330 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA--------LFREMLNSPVLRPDGVTVVSVLQAC 52
           M  RD+VSWNS++A Y+Q     EC          LFR +L   V+    +T+  +L+ C
Sbjct: 100 MPDRDLVSWNSILAAYAQSS---ECVVENIQQAFLLFR-ILRQDVVYTSRMTLSPMLKLC 155

Query: 53  GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
             S  +      H +  +  +  D ++  AL+ +Y K G +   + L +EM  +D V ++
Sbjct: 156 LHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWN 215

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLST------------------------------- 141
            ++  Y+  GF E+A+DL       GL+                                
Sbjct: 216 LMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDAS 275

Query: 142 -------WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK 194
                   N  +S  + + ++ A+L    +M  S V  + VT   + +      +L  G+
Sbjct: 276 SVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQ 335

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           ++H  A+K   D  + V+ ++I+ Y K      A+ VFD    R LI W ++I+  A +G
Sbjct: 336 QVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNG 395

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
              +AV LF ++L  G++PD  T T+VL A
Sbjct: 396 LEVEAVCLFMQLLRCGLKPDQYTMTSVLKA 425



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 34/285 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S  +I+  N  ++ Y   G Y      F +M+ S V   D VT + +L    +   +  G
Sbjct: 276 SVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDV-ECDQVTFILMLATAVKVDSLALG 334

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH   ++  + + L + N+LI MY K     +AR + D MS++D +S++++I+G   +
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G   +A+ LF  + R GL                               +P+  T++S+ 
Sbjct: 395 GLEVEAVCLFMQLLRCGL-------------------------------KPDQYTMTSVL 423

Query: 182 SLFSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              S     L   K++H +A+K     + +V+TA+ID Y++   +  A+ +F+R     L
Sbjct: 424 KAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDL 482

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           + W A+++ Y    D  K + LF  M   G + D  T   V   C
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC 527



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 26/224 (11%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           SSD++ G   H  ++      + ++ N LI MY+KCGSL YAR + D+M D+D VS+++I
Sbjct: 52  SSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           ++ Y                         A  S  V  N  +A L L R ++   V  + 
Sbjct: 112 LAAY-------------------------AQSSECVVENIQQAFL-LFRILRQDVVYTSR 145

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           +T+S +  L  H   +   +  HGYA K   D + +VA A+++ Y K G +   + +F+ 
Sbjct: 146 MTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEE 205

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
              R +++W  ++ AY   G   +A+ L +   ++G+ P+ +T 
Sbjct: 206 MPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 258/473 (54%), Gaps = 40/473 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN++I GY++ G      +L+REM  S ++ PD  T   +++A    +D+  G  +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ VI S     +++ N+L+ +YA CG +  A  + D+M +KD                 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----------------- 186

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                         L  WN+VI+G  +N + E  L L  EM + G++P+  TI S+ S  
Sbjct: 187 --------------LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  GK +H Y +K    RN++ +  ++D YA+ G +  A+ +FD    ++ + WT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 245 AIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++I   A +G   +A+ LF  M +  G+ P  +TF  +L AC+H G+V + ++ F  M  
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +Y I+P +EH+ CMV +L+RA ++ +A E++  MP++P+  +W  LL   ++ GD +L +
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           F    + ++EP ++G+Y++++N+Y+   RW +  ++R+QM   G+ K+PG S +E    +
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESAYV 468
             F+  D S  +S+ IY  L+ + G +R EGYV         ++E E+E+A V
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVV 525



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 41/265 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+WNS+I G+++ G  EE  AL+ EM NS  ++PDG T+VS+L AC +   +  
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTL 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++I+  +  +L   N L+ +YA+CG ++ A+ L DEM DK+ VS++++I G  V
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF ++A++LF+ M+                                 G+ P  +T   I
Sbjct: 301 NGFGKEAIELFKYME------------------------------STEGLLPCEITFVGI 330

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
               SH   +K G E        Y ++ R +        ++D  A+ G +  A       
Sbjct: 331 LYACSHCGMVKEGFEYFRRMREEYKIEPRIEH----FGCMVDLLARAGQVKKAYEYIKSM 386

Query: 236 KGR-SLIIWTAIISAYAAHGDASKA 259
             + +++IW  ++ A   HGD+  A
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLA 411


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 263/459 (57%), Gaps = 8/459 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+VSWN +I+ Y     +E+  A+FR M     L+ D  TVVS L AC    +   
Sbjct: 175 IPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEV 234

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H +V ++ ++M   I NAL+ MY KCG +D ARA+ DEM +K+ + +++++SGY  
Sbjct: 235 GEEIHRYV-DAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYAS 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +++A +LF+      +  W A+I+G VQ N  +  L L R+MQ   +RP+   + ++
Sbjct: 294 NGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTL 353

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L+ GK +HGY  +N    +  V TA++D YAK G +  A  VF   K R  
Sbjct: 354 LKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDT 413

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             WT++I   A +G  SKA+  F++M   G +PD +TF  VL+AC H GLV++    F++
Sbjct: 414 ASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDS 473

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
           M+  Y IQP  EHY+C++ +L RA  + EA   +  +P++ S     ++ +LL      G
Sbjct: 474 MTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYG 533

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           ++++ + V   L  +E +++  + ++A++Y+ A RW++   VR +MKE G+ K PG S I
Sbjct: 534 NLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSI 593

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILER----LLGLMRE 452
           E +G L  F+    S  + + I+ +L +    +LGL RE
Sbjct: 594 EVNGVLHEFMVGGPSHMEMDDIHSVLGQVTKWMLGLERE 632



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 187/423 (44%), Gaps = 85/423 (20%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           +V +N MI   ++   + +   LF E L    L PD  T+  V +A G    +V G +VH
Sbjct: 81  LVMYNLMIKAVAKDENFRKVLVLFSE-LRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVH 139

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
            +V++S    D  +CN+++GMY   G ++ A+ + DE+ ++D VS++ +IS Y+ H   E
Sbjct: 140 GYVVKS--GFDACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFE 197

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A+ +F+ M+R                               S ++ +  T+ S  S  S
Sbjct: 198 DAIAVFRRMRRE------------------------------SNLKADEATVVSTLSACS 227

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
              N + G+EIH Y V    +    +  A++D Y K G +  A+ +FD    +++I WT+
Sbjct: 228 VLRNQEVGEEIHRY-VDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTS 286

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQP--DPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++S YA++G   +A  LF         P  D V +TA+++      L D+A  +F  M  
Sbjct: 287 MVSGYASNGSLDEARELFER------SPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQI 340

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           Q                                  ++P   +   LL G + +G +E GK
Sbjct: 341 QR---------------------------------LRPDNFILVTLLKGCAQTGALEQGK 367

Query: 364 FVCDHLFEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           ++  H +  E   T + ++   + ++Y++ G  ++A  V  +MKE   A     SW    
Sbjct: 368 WL--HGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTA-----SWTSVI 420

Query: 421 GGL 423
            GL
Sbjct: 421 YGL 423



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 19/290 (6%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A  +   ++ P L  +N +I  + ++     VL L  E++  G+ P+  T+  +
Sbjct: 63  RGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPV 122

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F        +  G+++HGY VK+ +D    V  +++  Y   G +  A++VFD    R +
Sbjct: 123 FKAMGCLGKVVEGEKVHGYVVKSGFD--ACVCNSVMGMYGALGKMEVAKKVFDEIPERDV 180

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           + W  +IS+Y  H     A+++F  M   + ++ D  T  + LSAC+     +   +I  
Sbjct: 181 VSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHR 240

Query: 300 AMSGQYGIQPSVEH----YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +  +  +   + +      C  G + +AR I +  E  +K  +      W +++ G + 
Sbjct: 241 YVDAELEMTTKIGNALLDMYCKCGCVDKARAIFD--EMGNKNVI-----CWTSMVSGYAS 293

Query: 356 SGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           +G ++  +     LFE  P  +   +  M N Y Q   +DEA ++  +M+
Sbjct: 294 NGSLDEAR----ELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQ 339


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 260/469 (55%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V+W++M+AG+   G   +   ++R M    V + D V ++ V+QAC  + ++  
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV-KGDEVVMIGVIQACTAARNVRM 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++   ++MD+    +L+ MYAK G LD A  +   M  +++VS          
Sbjct: 228 GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS---------- 277

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+ISG  QN + +  L L R MQASG++P++  + S 
Sbjct: 278 ---------------------WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSA 316

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+   LK G+ +HG+ V+ R+D N  + TA ID Y+K G L  AQ +F+    R L
Sbjct: 317 LLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDL 375

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W A+I+   AHG    A++LF EM   G++PD  TF ++LSA +HSGLV++    F  
Sbjct: 376 ILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGR 435

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + I P+ +HY C+V +L+R+  + EA++ ++ M  +P+  +W ALL G   +  +E
Sbjct: 436 MVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLE 495

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ + D++ E++P++ G   +++NLY+   +WD+  +VR+ MK+SG  K+PG S IE  
Sbjct: 496 LGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIR 555

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE-----VEEE 464
           G    FV +D S  + E+I   + +L   MR+ GY+   E     +EEE
Sbjct: 556 GTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE 604



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 60/115 (52%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RP++ T +   S  +   +L+GG+ +   A    Y  +++V ++++  YA+ G +  A +
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           VF R   R  + W+ +++ + + G    A+ ++  M  +G++ D V    V+ AC
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 243/456 (53%), Gaps = 45/456 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + D+VSW +MIAGY+Q   + E   LF+EM +  + + D +   S + AC     +  
Sbjct: 499 LKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGI-KSDNIGFASAISACAGIQALDQ 557

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H     S    DL I NAL+ +YA+CG +  A A  D++  KD VS          
Sbjct: 558 GRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVS---------- 607

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN+++SG  Q+   E  L++  +M  +G+  N+ T  S 
Sbjct: 608 ---------------------WNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSA 646

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ +N++ GK+IHG   K  YD    V+ A+I  YAK G +               
Sbjct: 647 VSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD------------- 693

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W ++I+ Y+ HG   +A+ LF +M    + P+ VTF  VLSAC+H GLVD+    F +
Sbjct: 694 ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRS 753

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + + P  EHYAC+V +L R+  +S A  FV +MP++P A VW  LL   ++  +++
Sbjct: 754 MSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNID 813

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EP+++  Y++++N+Y+ +G+WD  DR R+ MK+ G+ K PGRSW+E  
Sbjct: 814 IGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVD 873

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F A D +  +++ IY  L  L     E GYV
Sbjct: 874 NSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYV 909



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 192/415 (46%), Gaps = 72/415 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  RD VSW +MI+G SQ G+ EE   LF ++               VL AC +     F
Sbjct: 225 LKARDSVSWVAMISGLSQNGYEEEAMLLFCQI---------------VLSACTKVEFFEF 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++     + ++CNAL+ +Y++ G+L  A  +   MS +D VSY+++ISG   
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 121 HGFVEKAMDLFQVM----KRPGLSTWNAVIS-----GLVQNNR----------------- 154
            G++ +A+ LF+ M    ++P   T  +++S     G + N +                 
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 155 -----------------HEAVL------------DLVREMQASGVRPNAVTISSIFSLFS 185
                            HE  L             +  +MQ  G+ PN  T  SI    +
Sbjct: 390 EGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCT 449

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
                  G++IH   +K  +  N+YV++ +ID YAK G L  A ++F R K   ++ WTA
Sbjct: 450 TLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTA 509

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +I+ Y  H   ++A++LF EM + GI+ D + F + +SACA    +D+   I +A S   
Sbjct: 510 MIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQI-HAQSCLS 568

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           G    +     +V + +R  ++ EA     ++  K +   W +L+ G + SG  E
Sbjct: 569 GYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFE 622



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 163/342 (47%), Gaps = 56/342 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD VS+NS+I+G +Q G+     ALF++M N    +PD VTV S+L AC     +  
Sbjct: 312 MSQRDRVSYNSLISGLAQQGYINRALALFKKM-NLDCQKPDCVTVASLLSACASVGALPN 370

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL------LDEMSDK-------- 106
           G + H++ I++ +  D+ +  +L+ +Y KC  +  A         LD ++          
Sbjct: 371 GKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQ 430

Query: 107 ------DEVSY-----------------------------------SAIISGYMVHGFVE 125
                 ++ +Y                                   S +I  Y  HG ++
Sbjct: 431 IEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLD 490

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A+ +F+ +K   + +W A+I+G  Q+++    L+L +EMQ  G++ + +  +S  S  +
Sbjct: 491 HALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACA 550

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L  G++IH  +  + Y  ++ +  A++  YA+ G +  A   FD+   +  + W +
Sbjct: 551 GIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNS 610

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           ++S +A  G   +A+++F +M   G++ +  TF + +SA A+
Sbjct: 611 LVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAAN 652



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 183/427 (42%), Gaps = 68/427 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC-GQSSDIV 59
           M  R +  WN +   +           LFR ML   V   + +  V VL+ C G +    
Sbjct: 123 MPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV-VLRGCSGNAVSFR 181

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           F  ++H   I S  +   +ICN LI +Y K G L  A+ + + +  +D VS+ A+ISG  
Sbjct: 182 FVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLS 241

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G+ E+AM LF                                      +  +A T   
Sbjct: 242 QNGYEEEAMLLF------------------------------------CQIVLSACTKVE 265

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            F           GK++HG  +K  +    YV  A++  Y+++G L  A+++F     R 
Sbjct: 266 FFEF---------GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            + + ++IS  A  G  ++A++LF +M  +  +PD VT  ++LSACA  G +      F+
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FH 375

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEF----------------VSKMPVK--- 340
           + + + G+   +     ++ +  +   I  A EF                 ++M ++   
Sbjct: 376 SYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIV 435

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRV 399
           P+   + ++L   +  G  +LG+ +   + +   + N     ++ ++Y++ G+ D A ++
Sbjct: 436 PNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKI 495

Query: 400 REQMKES 406
             ++KE+
Sbjct: 496 FRRLKEN 502



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           R+ Y    +ID Y   G L+ A  VFD    RSL  W  I + + A     +   LF  M
Sbjct: 95  RSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM 154

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           L   ++ D   F  VL  C+ + +  +  +  +A +   G + S      ++ +  +   
Sbjct: 155 LTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF 214

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +S A +    +  + S   W A++ G S +G
Sbjct: 215 LSSAKKVFENLKARDSVS-WVAMISGLSQNG 244


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 252/456 (55%), Gaps = 2/456 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + + ++V+W S+I+G +  G  EE   +F +M    V+  D   + ++L  C   ++I  
Sbjct: 186 LREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIM-DNFILATILGVCEGETNISI 244

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F +++ +   + + NA + MYAKCG  + A    + M+  D +S++ +I+ +  
Sbjct: 245 GEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSH 304

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE+A D F  M    + +WNA++    QN+  E  L L   M    VRP+ +T  ++
Sbjct: 305 SGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTM 364

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  +  K G +I   AVK     ++ V  + I  Y++ G +  AQ +FD  + ++L
Sbjct: 365 IGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNL 424

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W +I+  YA +G+  K + +F  ML  G +PD +T+ A+LS C+HSGLV +A   FN+
Sbjct: 425 ISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNS 484

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI  ++EH+ CMV +  RA  +  A + + +MP KP+A +WGALL    I  D E
Sbjct: 485 MTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIHHDTE 544

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +    +L E+  EN  +YI++AN YS  GR +    VR+ MKE  + K PG SWIE  
Sbjct: 545 MAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKDPGCSWIEVC 604

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE-GY 455
             +  F A DTS  + + IY  LE ++  ++++ GY
Sbjct: 605 NRVHVFTANDTSHPQVKDIYKALEDIVKKIKDDYGY 640



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 175/362 (48%), Gaps = 11/362 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++I+ +S  G + +    F EM      +P+ +T  SVL AC    D  +
Sbjct: 85  MPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC-QPNSMTYASVLSACANIYDFQW 143

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  ++     +D+ + N L+ MYAKCG +D ++ + + + + + V+++++ISG   
Sbjct: 144 GKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAH 203

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA----SGVRPNAVT 176
            G  E+  D+F  M++  +   N +++ ++     E  + +  ++      +G+  +   
Sbjct: 204 FGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPV 263

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            ++  S+++      G  E    A +     ++   T +I +++ +G +  A+  F+R  
Sbjct: 264 GNATLSMYAKC----GDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMP 319

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R++I W A++ AY  +    + + L+  ML   ++PD +TF  ++ AC+   +      
Sbjct: 320 ERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQ 379

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           I  + + + G+   V      + + SR  RI EA      +  K     W +++ G + +
Sbjct: 380 IL-SQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLIS-WNSIMGGYAQN 437

Query: 357 GD 358
           G+
Sbjct: 438 GE 439



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 142/321 (44%), Gaps = 5/321 (1%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           I N++I MY KC ++  A  +   +      S++ +I GY     + +A+D F+ M    
Sbjct: 30  IQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERD 89

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
             +WN +IS    +  H   L    EM   G +PN++T +S+ S  ++  + + GK +H 
Sbjct: 90  SVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHA 149

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
             V+     ++ V   ++D YAK G +  ++RVF+  +  +++ WT++IS  A  G   +
Sbjct: 150 RIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEE 209

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
              +F +M  + +  D      +L  C     +    +  +  + + G+  SV      +
Sbjct: 210 VYDIFYQMRKDCVIMDNFILATILGVCEGETNISIG-EQLHGFTVKTGMNSSVPVGNATL 268

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378
            + ++     +A+     M        W  ++   S SG+VE  +   D+   +   N  
Sbjct: 269 SMYAKCGDFEKASLAFETMAAHDVIS-WTTMITSFSHSGNVERAR---DYFNRMPERNVI 324

Query: 379 NYIIMANLYSQAGRWDEADRV 399
           ++  M   Y Q   W+E  ++
Sbjct: 325 SWNAMLGAYCQNSFWEEGLKL 345


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 244/455 (53%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D VSWN++IA   Q G Y++    F EML    ++PD  T  SVL+AC     + +
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG-MKPDDFTYGSVLKACAALRSLEY 470

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH+ VI+S +  D ++ + ++ MY KCG +D A+ L D +  +  VS          
Sbjct: 471 GLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS---------- 520

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA++SG   N   E       EM   G++P+  T +++
Sbjct: 521 ---------------------WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 559

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ + ++ GK+IHG  +K     + Y+++ ++D YAK G +  +  VF++ + R  
Sbjct: 560 LDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDF 619

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  YA HG   +A+ +F  M    + P+  TF AVL AC+H GL D     F+ 
Sbjct: 620 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHL 679

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y ++P +EH+ACMV +L R++   EA +F++ MP +  A +W  LL    I  DVE
Sbjct: 680 MTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVE 739

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +    ++  ++P+++  YI+++N+Y+++G+W +  R R  +K+  L K PG SWIE  
Sbjct: 740 IAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 799

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F+  D +  +S ++Y +L  L+G M+  GY
Sbjct: 800 SEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 834



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 142/283 (50%), Gaps = 32/283 (11%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M+ G  + G   E   LF+ M+ S + R D V++  V  AC ++     G +VH   I
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSI-RFDVVSLSGVFSACAETKGYFQGQQVHCLAI 378

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +S   +D+ + NA++ +Y KC                      A++  Y++         
Sbjct: 379 KSGFDVDICVNNAVLDLYGKC---------------------KALMEAYLI--------- 408

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
            FQ MK+    +WNA+I+ L QN  ++  +    EM   G++P+  T  S+    +   +
Sbjct: 409 -FQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 467

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L+ G  +H   +K+    + +VA+ ++D Y K G +  AQ++ DR  G+ ++ W AI+S 
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 527

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           ++ + ++ +A   F+EML+ G++PD  TF  VL  CA+   ++
Sbjct: 528 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIE 570



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 32/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+VSWN++++GY Q G ++E   LF EM    V  PD  T   +L++C    ++  
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGV-SPDRTTFAVLLKSCSALEELSL 167

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   +++ +++D+   +AL+ MY KC SLD A      M +++ VS+ A I+G   
Sbjct: 168 GVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG--- 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                        VQN ++   L+L  EMQ  G+  +  + +S 
Sbjct: 225 ----------------------------CVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S L  G+++H +A+KN++  +  V TAI+D YAK   L  A+R F      ++
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTV 316

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
               A++      G   +A+ LF  M+ + I+ D V+ + V SACA +
Sbjct: 317 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 364



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 190/442 (42%), Gaps = 72/442 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +R+ VSW + IAG  Q   Y     LF EM  L   V +P   +  S  ++C   S +
Sbjct: 210 MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP---SYASAFRSCAAMSCL 266

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G ++H   I++    D  +  A++ +YAK  SL  AR     + +    + +A++ G 
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G   +AM LFQ M R                               S +R + V++S
Sbjct: 327 VRAGLGIEAMGLFQFMIR-------------------------------SSIRFDVVSLS 355

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +FS  +       G+++H  A+K+ +D +I V  A++D Y K   L  A  +F   K +
Sbjct: 356 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 415

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVDK 293
             + W AII+A   +G     +  FNEML  G++PD  T+ +VL ACA       GL+  
Sbjct: 416 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVH 475

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------S 328
              I + +     +  +V    C  G++  A+++                          
Sbjct: 476 DKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESE 535

Query: 329 EATEFVSK---MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--IM 383
           EA +F S+   M +KP    +  +L   +    +ELGK +   + + E  +   YI   +
Sbjct: 536 EAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDD-EYISSTL 594

Query: 384 ANLYSQAGRWDEADRVREQMKE 405
            ++Y++ G   ++  V E++++
Sbjct: 595 VDMYAKCGDMPDSLLVFEKVEK 616



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 12/263 (4%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL-------WICNAL 83
           E    P + P  VT   V Q+C Q+     G E       +H +M +       ++ N L
Sbjct: 4   EQQQPPPVAPARVTFSRVFQSCAQA-----GREALAAGRAAHARMVVSGFVPTAFVSNCL 58

Query: 84  IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWN 143
           + MYA+C     AR + D M  +D VS++ +++ Y   G +  A+ LF  M  P + +WN
Sbjct: 59  LQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWN 118

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A++SG  Q    +  +DL  EM   GV P+  T + +    S    L  G ++H  AVK 
Sbjct: 119 ALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT 178

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             + ++   +A++D Y K   L  A   F     R+ + W A I+    +    + + LF
Sbjct: 179 GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELF 238

Query: 264 NEMLNNGIQPDPVTFTAVLSACA 286
            EM   G+     ++ +   +CA
Sbjct: 239 IEMQRLGLGVSQPSYASAFRSCA 261



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 17/172 (9%)

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA-------VKNRYDRNIYVATAII 216
           + Q   V P  VT S +F      S  + G+E            V + +    +V+  ++
Sbjct: 5   QQQPPPVAPARVTFSRVFQ-----SCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLL 59

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YA+      A+RVFD    R  + W  +++AY+  GD S AV+LF+ M +    PD V
Sbjct: 60  QMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD----PDVV 115

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
           ++ A++S     G+  ++ D+F  M+ + G+ P    +A ++   S    +S
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMA-RRGVSPDRTTFAVLLKSCSALEELS 166


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 244/455 (53%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D VSWN++IA   Q G Y++    F EML    ++PD  T  SVL+AC     + +
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG-MKPDDFTYGSVLKACAALRSLEY 470

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH+ VI+S +  D ++ + ++ MY KCG +D A+ L D +  +  VS          
Sbjct: 471 GLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS---------- 520

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA++SG   N   E       EM   G++P+  T +++
Sbjct: 521 ---------------------WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 559

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ + ++ GK+IHG  +K     + Y+++ ++D YAK G +  +  VF++ + R  
Sbjct: 560 LDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDF 619

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  YA HG   +A+ +F  M    + P+  TF AVL AC+H GL D     F+ 
Sbjct: 620 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHL 679

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y ++P +EH+ACMV +L R++   EA +F++ MP +  A +W  LL    I  DVE
Sbjct: 680 MTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVE 739

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +    ++  ++P+++  YI+++N+Y+++G+W +  R R  +K+  L K PG SWIE  
Sbjct: 740 IAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 799

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F+  D +  +S ++Y +L  L+G M+  GY
Sbjct: 800 SEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 834



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 142/283 (50%), Gaps = 32/283 (11%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M+ G  + G   E   LF+ M+ S + R D V++  V  AC ++     G +VH   I
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSI-RFDVVSLSGVFSACAETKGYFQGQQVHCLAI 378

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +S   +D+ + NA++ +Y KC                      A++  Y++         
Sbjct: 379 KSGFDVDICVNNAVLDLYGKC---------------------KALMEAYLI--------- 408

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
            FQ MK+    +WNA+I+ L QN  ++  +    EM   G++P+  T  S+    +   +
Sbjct: 409 -FQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 467

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L+ G  +H   +K+    + +VA+ ++D Y K G +  AQ++ DR  G+ ++ W AI+S 
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 527

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           ++ + ++ +A   F+EML+ G++PD  TF  VL  CA+   ++
Sbjct: 528 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIE 570



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 32/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+VSWN++++GY Q G ++E   LF EM    V  PD  T   +L++C    ++  
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGV-SPDRTTFAVLLKSCSALEELSL 167

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   +++ +++D+   +AL+ MY KC SLD A      M +++ VS+ A I+G   
Sbjct: 168 GVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG--- 224

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                        VQN ++   L+L  EMQ  G+  +  + +S 
Sbjct: 225 ----------------------------CVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S L  G+++H +A+KN++  +  V TAI+D YAK   L  A+R F      ++
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTV 316

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
               A++      G   +A+ LF  M+ + I+ D V+ + V SACA +
Sbjct: 317 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 364



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 190/442 (42%), Gaps = 72/442 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +R+ VSW + IAG  Q   Y     LF EM  L   V +P   +  S  ++C   S +
Sbjct: 210 MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP---SYASAFRSCAAMSCL 266

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G ++H   I++    D  +  A++ +YAK  SL  AR     + +    + +A++ G 
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G   +AM LFQ M R                               S +R + V++S
Sbjct: 327 VRAGLGIEAMGLFQFMIR-------------------------------SSIRFDVVSLS 355

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +FS  +       G+++H  A+K+ +D +I V  A++D Y K   L  A  +F   K +
Sbjct: 356 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 415

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVDK 293
             + W AII+A   +G     +  FNEML  G++PD  T+ +VL ACA       GL+  
Sbjct: 416 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVH 475

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-------------------------S 328
              I + +     +  +V    C  G++  A+++                          
Sbjct: 476 DKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESE 535

Query: 329 EATEFVSK---MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--IM 383
           EA +F S+   M +KP    +  +L   +    +ELGK +   + + E  +   YI   +
Sbjct: 536 EAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDD-EYISSTL 594

Query: 384 ANLYSQAGRWDEADRVREQMKE 405
            ++Y++ G   ++  V E++++
Sbjct: 595 VDMYAKCGDMPDSLLVFEKVEK 616



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 12/263 (4%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM-------DLWICNAL 83
           E    P + P  VT   V Q+C Q+     G E       +H +M       + ++ N L
Sbjct: 4   EQQQPPPVAPARVTFSRVFQSCAQA-----GREALAAGRAAHARMVVSGFVPNAFVSNCL 58

Query: 84  IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWN 143
           + MYA+C     AR + D M  +D VS++ +++ Y   G +  A+ LF  M  P + +WN
Sbjct: 59  LQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWN 118

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A++SG  Q    +  +DL  EM   GV P+  T + +    S    L  G ++H  AVK 
Sbjct: 119 ALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT 178

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             + ++   +A++D Y K   L  A   F     R+ + W A I+    +    + + LF
Sbjct: 179 GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELF 238

Query: 264 NEMLNNGIQPDPVTFTAVLSACA 286
            EM   G+     ++ +   +CA
Sbjct: 239 IEMQRLGLGVSQPSYASAFRSCA 261



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 17/172 (9%)

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA-------VKNRYDRNIYVATAII 216
           + Q   V P  VT S +F      S  + G+E            V + +  N +V+  ++
Sbjct: 5   QQQPPPVAPARVTFSRVFQ-----SCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLL 59

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YA+      A+RVFD    R  + W  +++AY+  GD S AV+LF+ M +    PD V
Sbjct: 60  QMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD----PDVV 115

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
           ++ A++S     G+  ++ D+F  M+ + G+ P    +A ++   S    +S
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMA-RRGVSPDRTTFAVLLKSCSALEELS 166


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 254/467 (54%), Gaps = 38/467 (8%)

Query: 4   RDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            ++ SW +MI GY Q GG+ EE   LFR M+ + V+ P+  T  S L+AC   + +  G 
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-PNHFTFSSTLKACANLAALRIGE 396

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +V    ++        + N+LI MYA+ G +D AR                         
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR------------------------- 431

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
              KA D   ++    L ++N VI    +N   E  L+L  E++  G+  +A T +S+ S
Sbjct: 432 ---KAFD---ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    +  G++IH   +K+    N  V  A+I  Y++ G +  A +VF+  + R++I 
Sbjct: 486 GAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS 545

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WT+II+ +A HG A++A+ LF++ML  G++P+ VT+ AVLSAC+H GLV++ W  F +M 
Sbjct: 546 WTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMY 605

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            ++G+ P +EHYACMV +L R+  +SEA +F++ MP K  A VW   L    + G++ELG
Sbjct: 606 TEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELG 665

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K     + E EP +   YI+++NLY+   +WDE   +R+ MKE  L K  G SW+E    
Sbjct: 666 KHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENK 725

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           +  F   DTS  K+ +IY  L+ L   +++ GYV     +L +VEEE
Sbjct: 726 VHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEE 772



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 170/361 (47%), Gaps = 38/361 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V+W  MI    Q G+  E   LF EM+ S    PD  T+  V+ AC     ++ 
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGY-EPDRFTLSGVISACANMELLLL 289

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAIISG 117
           G ++H+  I   + +D  +   LI MYAKC   GS+  AR + D++ D +  S       
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS------- 342

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVT 176
                                   W A+I+G VQ   + E  LDL R M  + V PN  T
Sbjct: 343 ------------------------WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFT 378

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            SS     ++ + L+ G+++  +AVK  +     VA ++I  YA++G +  A++ FD   
Sbjct: 379 FSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILF 438

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++LI +  +I AYA + ++ +A+ LFNE+ + G+     TF ++LS  A  G + K   
Sbjct: 439 EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQ 498

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           I +A   + G++ +      ++ + SR   I  A +    M  + +   W +++ G +  
Sbjct: 499 I-HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFAKH 556

Query: 357 G 357
           G
Sbjct: 557 G 557



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
            PD  T    L+ C ++     G  VH  + +S +++D    N+LI +Y+KCG       
Sbjct: 63  HPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQW----- 117

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEA 157
                                     EKA  +FQ+M     L +W+A++S    NN    
Sbjct: 118 --------------------------EKATSIFQLMGSSRDLISWSAMVSCFANNNMGFR 151

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAII 216
            L    +M  +G  PN    ++     S    +  G  I G+ VK  Y   ++ V   +I
Sbjct: 152 ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLI 211

Query: 217 DTYAK-TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           D + K  G L  A +VF++   R+ + WT +I+     G A +A+ LF EM+ +G +PD 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDR 271

Query: 276 VTFTAVLSACAHSGLV 291
            T + V+SACA+  L+
Sbjct: 272 FTLSGVISACANMELL 287



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 136/292 (46%), Gaps = 38/292 (13%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S RD++SW++M++ ++           F +M+ +    P+     +  +AC  +  +  G
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY-PNEYCFAAATRACSTAEFVSVG 187

Query: 62  MEVHNFVIES-HIKMDLWICNALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYM 119
             +  FV+++ +++ D+ +   LI M+ K  G L  A  + ++M +++ V          
Sbjct: 188 DSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAV---------- 237

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                TW  +I+ L+Q       +DL  EM  SG  P+  T+S 
Sbjct: 238 ---------------------TWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSG 276

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT---GFLHGAQRVFDRFK 236
           + S  ++   L  G+++H  A+++    +  V   +I+ YAK    G +  A+++FD+  
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 237 GRSLIIWTAIISAYAAHGD-ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             ++  WTA+I+ Y   G    +A+ LF  M+   + P+  TF++ L ACA+
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 91/150 (60%), Gaps = 5/150 (3%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +++++S+N++I  Y++    EE   LF E+ +   +     T  S+L        I  G 
Sbjct: 439 EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG-MGASAFTFASLLSGAASIGTIGKGE 497

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  VI+S +K++  +CNALI MY++CG+++ A  + ++M D++ +S+++II+G+  HG
Sbjct: 498 QIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHG 557

Query: 123 FVEKAMDLFQVMK----RPGLSTWNAVISG 148
           F  +A++LF  M     RP L T+ AV+S 
Sbjct: 558 FATQALELFHKMLEEGVRPNLVTYIAVLSA 587



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+++SW S+I G+++ GF  +   LF +ML   V RP+ VT ++VL AC     +  
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV-RPNLVTYIAVLSACSHVGLVNE 596

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G +    +   H    +M+ + C  ++ +  + GSL  A   ++ M  K D + +   + 
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYAC--MVDILGRSGSLSEAIQFINSMPYKADALVWRTFLG 654

Query: 117 GYMVHGFVE 125
              VHG +E
Sbjct: 655 ACRVHGNLE 663



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 134 MKRPGLSTWNAVISGLVQ---NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
           ++ P  +  N +   L+Q   N R    +  +  M   G  P+  T S          + 
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLIIWTAIISA 249
             G  +H    ++    +     ++I  Y+K G    A  +F      R LI W+A++S 
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSC 142

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           +A +    +A+  F +M+ NG  P+   F A   AC+ +  V     IF  +     +Q 
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQS 202

Query: 310 SVEHYACMVGVLSRAR-RISEATEFVSKMPVKPSAKVWGALL 350
            V     ++ +  + R  +  A +   KMP + +A  W  ++
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPER-NAVTWTLMI 243


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 252/445 (56%), Gaps = 8/445 (1%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           +F  M+      P+  T V V +ACG    ++ G ++    I+  ++ +L++ NA+I MY
Sbjct: 18  IFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMY 77

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           A  G +D AR + D   D+D  S++ +I GY+  G + +A ++F  M    + +W  +I+
Sbjct: 78  ANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIA 137

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207
           G VQ    +  LDL  EM  +G  PN  T++S  +  ++   L  G+ IH Y  K+    
Sbjct: 138 GYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKM 197

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW--TAIISAYAAHGDASKAVSLFNE 265
           N  +  +++D YAK G +  A +VF    G  L +W   A+I  YA HG + +A+ LF +
Sbjct: 198 NERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQ 257

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M    + P+ VTF A+L+AC+H  LV++    F +M+  YGI+P +EHY CMV +L R+ 
Sbjct: 258 MKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSG 317

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            + EA E V  MP+ P A +WGALL    I  D+E G+ +   + E++ ++ G ++++AN
Sbjct: 318 LLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLAN 377

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           LYS +G+WDEA  VR++++ SG  K PG S IE +G    F+  D S  +++Q+YL L+ 
Sbjct: 378 LYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDE 437

Query: 446 LLGLMREEGY------VLLDEVEEE 464
           +   ++  GY      VLLD  +EE
Sbjct: 438 MTTKLKNAGYVPEFGEVLLDIDDEE 462



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 42/266 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD+VSW ++IAGY Q G ++E   LF EML +    P+  T+ S L AC     +  
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP-PPNEFTLASALAACANLVALDQ 182

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDY-ARALLDEMSDKDEV-SYSAIISGY 118
           G  +H ++ +S IKM+  +  +L+ MYAKCG +D+ A+   DE   K +V  ++A+I GY
Sbjct: 183 GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGY 242

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            +HG  ++A+DLF+                               +M+   V PN VT  
Sbjct: 243 AMHGKSKEAIDLFE-------------------------------QMKVEKVSPNKVTFV 271

Query: 179 SIFSLFSHFSNLKGGKEIHGY--AVKNRY--DRNIYVATAIIDTYAKTGFLHGAQR-VFD 233
           ++ +  SH   ++ G+   GY  ++ + Y  +  I     ++D   ++G L  A+  VF+
Sbjct: 272 ALLNACSHGKLVEEGR---GYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFN 328

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKA 259
                   IW A++ A   H D  + 
Sbjct: 329 MPMAPDATIWGALLGACRIHKDIERG 354



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 133/337 (39%), Gaps = 76/337 (22%)

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
           ++  + H ++   +  ++ SG  PN  T   +F    +   +  G++I  +A+K   + N
Sbjct: 7   VIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESN 66

Query: 209 IYVATAIIDTYAKTGFLHGAQRV-------------------------------FDRFKG 237
           ++V  A+I  YA  G +  A+RV                               FD    
Sbjct: 67  LFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSE 126

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH---------- 287
           R ++ WT II+ Y   G   +A+ LF+EML  G  P+  T  + L+ACA+          
Sbjct: 127 RDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWI 186

Query: 288 -------------------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
                                     G +D A  +F+    +YG++  V  +  M+G  +
Sbjct: 187 HVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH---DEYGLKLKVWPWNAMIGGYA 243

Query: 323 RARRISEATEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPEN 376
              +  EA +   +M V+   P+   + ALL   S    VE G+     +   + IEPE 
Sbjct: 244 MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE- 302

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
             +Y  M +L  ++G   EA+     M  +  A I G
Sbjct: 303 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWG 339


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 228/393 (58%), Gaps = 3/393 (0%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+    S  + D + C  LI  YAK G+L  AR + DEMS +D   ++A+I+GY   G 
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFS 182
           ++ AM+LF  M R  +++W  VISG  QN  +   L +   M+    V+PN +T+ S+  
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLI 241
             ++   L+ G+ + GYA +N +  NIYV  A I+ Y+K G +  A+R+F+     R+L 
Sbjct: 224 ACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLC 283

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W ++I + A HG   +A++LF +ML  G +PD VTF  +L AC H G+V K  ++F +M
Sbjct: 284 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 343

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              + I P +EHY CM+ +L R  ++ EA + +  MP+KP A VWG LL   S  G+VE+
Sbjct: 344 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEI 403

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW-IECS 420
            +   + LF++EP N GN +IM+N+Y+   +WD   R+R+ MK+  + K  G S+ +E  
Sbjct: 404 AEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVG 463

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
             +  F  +D S  +S +IY +LE +   M+ E
Sbjct: 464 VDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKLE 496



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 121/265 (45%), Gaps = 40/265 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++ SW ++I+G+SQ G Y E   +F  M     ++P+ +TVVSVL AC    ++  
Sbjct: 174 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 233

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYM 119
           G  +  +  E+    ++++CNA I MY+KCG +D A+ L +E+ + ++  S++++I    
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            HG                               +H+  L L  +M   G +P+AVT   
Sbjct: 294 THG-------------------------------KHDEALTLFAQMLREGEKPDAVTFVG 322

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +     H   +  G+E+     + ++    +     +ID   + G L   Q  +D  K  
Sbjct: 323 LLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKL---QEAYDLIKTM 379

Query: 239 SL----IIWTAIISAYAAHGDASKA 259
            +    ++W  ++ A + HG+   A
Sbjct: 380 PMKPDAVVWGTLLGACSFHGNVEIA 404



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 35/219 (15%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           +L YAR L D   +     Y+ +I  Y VH                              
Sbjct: 31  NLVYARKLFDHHQNSCTFLYNKLIQAYYVH------------------------------ 60

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
           +  HE+++ L   +   G+RP+  T + IF+  + FS+ +  + +H    ++ ++ + + 
Sbjct: 61  HQPHESIV-LYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
            T +I  YAK G L  A+RVFD    R + +W A+I+ Y   GD   A+ LF+ M    +
Sbjct: 120 CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNV 179

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
                ++T V+S  + +G   +A  +F  M     ++P+
Sbjct: 180 ----TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 33/219 (15%)

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           + G K++H + ++   D        ++        L  A+++FD  +     ++  +I A
Sbjct: 1   MNGIKQLHAHCLRTGVDE----TKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQA 56

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDIF 298
           Y  H    +++ L+N +  +G++P   TF  + +A A           HS      ++  
Sbjct: 57  YYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE-- 114

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              S  +     +  YA  +G L  ARR+ +          K    VW A++ G    GD
Sbjct: 115 ---SDSFCCTTLITAYA-KLGALCCARRVFDEMS-------KRDVPVWNAMITGYQRRGD 163

Query: 359 VELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEA 396
           ++        LF+  P +N  ++  + + +SQ G + EA
Sbjct: 164 MKAAM----ELFDSMPRKNVTSWTTVISGFSQNGNYSEA 198


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 276/489 (56%), Gaps = 44/489 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +D+V+WN +I+GY Q G  E   A++  +++    L+ D VT+ +++ A  ++ ++ 
Sbjct: 335 MIDKDVVTWNLIISGYVQQGLVE--NAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLK 392

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY- 118
            G EV  + I    + D+ + + ++ MYAKCGS+  A+ + D  ++KD + ++ +++ Y 
Sbjct: 393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYA 452

Query: 119 ----------------------------------MVHGFVEKAMDLFQVMKR----PGLS 140
                                             + +G V++A D+F  M+     P L 
Sbjct: 453 ESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLI 512

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W  +++G+VQN   E  +  +R+MQ SG+RPNAV+I+   S  ++ ++L  G+ IHGY 
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYI 572

Query: 201 VKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           ++N ++  ++ + T+++D YAK G ++ A++VF       L ++ A+ISAYA +G+  +A
Sbjct: 573 IRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEA 632

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
           ++L+  +   G++PD +T T VLSAC H+G  ++A +I   M  ++G+ P +EHY  MV 
Sbjct: 633 IALYRSLEGVGLKPDNITITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGLMVD 692

Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
           +L+ A +  +A   + +MP KP A++  +L+   +     EL  ++   L E EP+N+GN
Sbjct: 693 LLASAGQTDKALRLIEEMPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESEPDNSGN 752

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG-GLQSFVAKDTSGDKSEQ 438
           Y+ ++N Y+  G WDE  ++RE MK  GL K PG SWI+  G G+  FVA D +  +  +
Sbjct: 753 YVTISNAYAVEGSWDEVVKMREIMKAKGLKKKPGCSWIQIKGEGVHVFVANDKTHIRINE 812

Query: 439 IYLILERLL 447
           I  IL  LL
Sbjct: 813 IQRILALLL 821



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 199/404 (49%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   LF +M    V  P  VTV + L A      +  
Sbjct: 234 IPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGV-EPTRVTVSTCLSASANMGGVEE 292

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + +++D  +  +L+  Y K G ++YA  + D M DKD V           
Sbjct: 293 GKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVV----------- 341

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    E  + + + M+   ++ + VT++++
Sbjct: 342 --------------------TWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATL 381

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NLK GKE+  Y +++ ++ +I +A+ ++D YAK G +  A++VFD    + L
Sbjct: 382 MSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDL 441

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + + + LF  M   G+ P+ +T+  ++ +   +G VD+A D+F  
Sbjct: 442 ILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQ 501

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  + +     EA  F+ KM    ++P+A      L   +   
Sbjct: 502 MQSS-GIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLA 560

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            +  G+ +  ++      ++   I   + ++Y++ G  ++A++V
Sbjct: 561 SLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKV 604



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 192/413 (46%), Gaps = 49/413 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIF-PDNFVVPNVCKACGALQWSRFGRG 194

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V+++ ++  +++ ++L  MY KCG LD AR + DE+ +++ V+++A++ GY+ +G 
Sbjct: 195 VHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGM 254

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A+ LF                                +M+  GV P  VT+S+  S 
Sbjct: 255 NEEAIRLFS-------------------------------DMRKEGVEPTRVTVSTCLSA 283

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T++++ Y K G +  A+ VFDR   + ++ W
Sbjct: 284 SANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTW 343

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             IIS Y   G    A+ +   M    ++ D VT   ++SA A +     G   + + I 
Sbjct: 344 NLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIR 403

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           ++      +  +V       G +  A+++ ++T        +    +W  LL   + SG 
Sbjct: 404 HSFESDIVLASTVMDMYAKCGSIVDAKKVFDST-------AEKDLILWNTLLAAYAESGL 456

Query: 359 VELG-KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              G +       E  P N  T N II++ L  + G  DEA  +  QM+ SG+
Sbjct: 457 SGEGLRLFYGMQLEGVPPNVITWNLIILSLL--RNGEVDEAKDMFLQMQSSGI 507



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 47/352 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  ++++      + +I   L+  YAKC +LD A  L  ++  
Sbjct: 76  ILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRV 135

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII      G  E A+                   G V             EM
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGAL------------------MGFV-------------EM 164

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             + + P+   + ++          + G+ +HGY VK   +  ++VA+++ D Y K G L
Sbjct: 165 LENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVL 224

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    R+++ W A++  Y  +G   +A+ LF++M   G++P  VT +  LSA 
Sbjct: 225 DDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSAS 284

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G V++     A  I N +     +  S+ ++ C VG++       E  E V    + 
Sbjct: 285 ANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLI-------EYAEMVFDRMID 337

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                W  ++ G    G VE   ++C  L  +E     + + +A L S A R
Sbjct: 338 KDVVTWNLIISGYVQQGLVENAIYMC-QLMRLEKLKY-DCVTLATLMSAAAR 387



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N   +  L LV EM    +R        I     +  +L  GK+I
Sbjct: 33  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQI 92

Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y +N Y+ T ++  YAK   L  A+ +F + + R++  W AII      G
Sbjct: 93  HARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIG 152

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
               A+  F EML N I PD      V  AC
Sbjct: 153 LCEGALMGFVEMLENEIFPDNFVVPNVCKAC 183


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 256/489 (52%), Gaps = 32/489 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   ++  +N+MI G+   G+       +  ML    + P   T  S+++AC     +  
Sbjct: 194 MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 253

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMY-------------------------------AK 89
           G  VH  + +   +  L++  AL+  Y                               A+
Sbjct: 254 GQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALAR 313

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
            G +D AR L +EM +++  +++ +I GY   G VE A  LF  M    + +W  +I+  
Sbjct: 314 VGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCY 373

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            QN +++  L +  EM+ +G+ P+ VT+S++ S  +H   L+ GKEIH Y +    + ++
Sbjct: 374 SQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDV 433

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           Y+ +A++D YAK G L  +  +F +   ++L  W A+I   A HG A KA+ +F  M   
Sbjct: 434 YIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMERE 493

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            I P+ VTF ++LSAC H+GLVD+    F +M+  Y I+P + HY CMV +LS++  ++E
Sbjct: 494 KIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNE 553

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A E +  M  +P++ +WGALL G  + G+ E+ +   + L  +EP N+G+Y ++ ++Y++
Sbjct: 554 ALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAE 613

Query: 390 AGRWDEADRVREQMKESGL-AKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLG 448
              W E   +R  MKE G+  K PG SWIE  G +  F A   S   S++IY +L  L G
Sbjct: 614 EKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFVLTELDG 673

Query: 449 LMREEGYVL 457
            ++  GY+L
Sbjct: 674 QLKLAGYIL 682


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 259/475 (54%), Gaps = 46/475 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSWN+MI+ +SQ   + E  A FR M+   V   DGVT+ SVL AC     +  G E
Sbjct: 177 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV-ELDGVTIASVLPACSHLERLDVGKE 235

Query: 64  VHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +V+ ++ +  + ++ +AL+ MY  C  ++  R + D +  +                
Sbjct: 236 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR--------------- 280

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIF 181
                           +  WNA+ISG  +N   E  L L  EM + +G+ PN  T++S+ 
Sbjct: 281 ----------------IELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 324

Query: 182 SLFSH-FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               H  + +  GKEIH YA++N    +I V +A++D YAK G L+ ++RVF+    +++
Sbjct: 325 PACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNV 384

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-----IQPDPVTFTAVLSACAHSGLVDKAW 295
           I W  +I A   HG   +A+ LF  M+         +P+ VTF  V +AC+HSGL+ +  
Sbjct: 385 ITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGL 444

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGAS 354
           ++F  M   +G++P+ +HYAC+V +L RA ++ EA E V+ MP +      W +LL    
Sbjct: 445 NLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACR 504

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           I  +VELG+    +L  +EP    +Y++++N+YS AG W++A  VR+ M++ G+ K PG 
Sbjct: 505 IHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGC 564

Query: 415 SWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           SWIE    +  F+A D S  +SEQ++  LE L   MR+EGYV     +L  V+E+
Sbjct: 565 SWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDED 619



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 28/366 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R   SW   +   ++   + E  + + EM  S   RPD     +VL+A     D+  G +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGA-RPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 64  VHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H   ++  +    + + N L+ MY KCG +           DK   + +A+++ Y   G
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGI----------GDKT-FTNNALMAMYAKLG 162

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V+ +  LF+      + +WN +IS   Q++R    L   R M   GV  + VTI+S+  
Sbjct: 163 RVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLP 222

Query: 183 LFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
             SH   L  GKEIH Y ++N     N +V +A++D Y     +   +RVFD   GR + 
Sbjct: 223 ACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE 282

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHS------GLVDKA 294
           +W A+IS YA +G   KA+ LF EM+   G+ P+  T  +V+ AC HS      G    A
Sbjct: 283 LWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHA 342

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
           + I N ++    +  ++       G L+ +RR+       ++MP K +   W  L+    
Sbjct: 343 YAIRNMLASDITVGSALVDMYAKCGCLNLSRRV------FNEMPNK-NVITWNVLIMACG 395

Query: 355 ISGDVE 360
           + G  E
Sbjct: 396 MHGKGE 401



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 15/136 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP----VLRPDGVTVVSVLQACGQSS 56
           M  +++++WN +I      G  EE   LF+ M+         +P+ VT ++V  AC  S 
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438

Query: 57  DIVFGMEV-----HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEV- 109
            I  G+ +     H+  +E     D + C  ++ +  + G L+ A  L++ M ++ D+V 
Sbjct: 439 LISEGLNLFYRMKHDHGVEP--TSDHYAC--VVDLLGRAGQLEEAYELVNTMPAEFDKVG 494

Query: 110 SYSAIISGYMVHGFVE 125
           ++S+++    +H  VE
Sbjct: 495 AWSSLLGACRIHQNVE 510


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 147/418 (35%), Positives = 240/418 (57%), Gaps = 1/418 (0%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            MS+RD+VSWNS+I GY +   Y E   +F EM  + V + D VT+V V+ AC    +   
Sbjct: 856  MSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADV-KGDAVTMVKVVLACTVLGEWGV 914

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
               +  ++ E+ +++D+++ N LI MY +   +D AR + D M D++ VS++A+I GY  
Sbjct: 915  VDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGK 974

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             G +  A  LF  M    + +W ++IS   Q  +    + L +EM  + V+P+ +T++S+
Sbjct: 975  AGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASV 1034

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             S  +H   L  G+ +H Y  K   + +IYV  A+ID Y K G +     VF+    R  
Sbjct: 1035 LSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDS 1094

Query: 241  IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            + WT++I+  A +G A  A++LF+ ML  G++P   TF  VL ACAH+G+VDK  + F +
Sbjct: 1095 VSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFES 1154

Query: 301  MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            M   YG+ P ++HY C+V +LSR+  +  A EF+ +MP+ P   VW  LL  + + G++ 
Sbjct: 1155 MERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLH 1214

Query: 361  LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            L +     L E +P N+GNYI+ +N Y+ + RW++  ++R  M+ES + K    S +E
Sbjct: 1215 LAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVE 1272



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 12/356 (3%)

Query: 9    WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
            WN MI G+SQ     E    +  ++ S  L  + +T   +L+AC + S+ V    VH  V
Sbjct: 764  WNIMIRGWSQTNQPIEAIRNY-NLMYSQALFGNNLTYPFLLKACARISN-VSCTTVHARV 821

Query: 69   IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            ++     DL++ NALI  YA    L +AR + DEMS++D VS++++I GY       + +
Sbjct: 822  LKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVL 881

Query: 129  DLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             +F+ M+   +     T   V+           V  ++  ++ + V  +    +++  ++
Sbjct: 882  VVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMY 941

Query: 185  SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
               S +   + +         DRN+    A+I  Y K G L  A+++FD    R +I WT
Sbjct: 942  GRRSMVDLARRV----FDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWT 997

Query: 245  AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            ++IS+Y+  G   KAV LF EM+   ++PD +T  +VLSACAH G +D    +   +  +
Sbjct: 998  SMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIR-K 1056

Query: 305  YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            Y +   +     ++ +  +   + +      +M  + S   W +++ G +++G  +
Sbjct: 1057 YDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVS-WTSVIAGLAVNGSAD 1111



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 15/310 (4%)

Query: 99   LLDEMSDKDEVSYSAIISGYMVHGF-VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
            ++ E+   D +S   ++  Y +    + KA +LF+ + RP LS WN +I G  Q N+   
Sbjct: 720  MIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIE 779

Query: 158  VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
             +     M +  +  N +T   +    +  SN+     +H   +K  +D +++V+ A+I 
Sbjct: 780  AIRNYNLMYSQALFGNNLTYPFLLKACARISNV-SCTTVHARVLKLGFDSDLFVSNALIH 838

Query: 218  TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
             YA    L  A++VFD    R L+ W ++I  Y      S+ + +F EM    ++ D VT
Sbjct: 839  GYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVT 898

Query: 278  FTAVLSACAHSGLVDKAWDIFNAM---SGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
               V+ AC   G     W + +AM     +  ++  V     ++ +  R   +  A    
Sbjct: 899  MVKVVLACTVLG----EWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVF 954

Query: 335  SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRW 393
             +M  +     W A++ G   +G++   +     LF+  P  +  ++  M + YSQAG++
Sbjct: 955  DRMRDRNMVS-WNAMIMGYGKAGNLVAAR----KLFDDMPHRDVISWTSMISSYSQAGQF 1009

Query: 394  DEADRVREQM 403
             +A R+ ++M
Sbjct: 1010 GKAVRLFQEM 1019


>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
          Length = 784

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 263/477 (55%), Gaps = 52/477 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEE----CKALFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           M ++  V+WN +I+GY Q G  EE    C+ + RE L     + D VT+ +++ A   + 
Sbjct: 312 MIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENL-----KFDCVTLSTLMSAATSTQ 366

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           ++  G E+  + I   ++ D+ + +  + MYAKCGS+  A+ + D    KD + ++ ++S
Sbjct: 367 NLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLS 426

Query: 117 GYMVHGFVEKAMDLFQVMKR---------------------------------------P 137
            Y   G   +A+ LF  M+                                        P
Sbjct: 427 AYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFP 486

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            L +W  +++GLVQN   E  +  +R+MQ SG+RPNA TI+   S  ++ ++L  G+ IH
Sbjct: 487 NLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGRSIH 546

Query: 198 GYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           GY ++N+ Y  + ++ T+++D YAK G ++ A+RVF       L ++ A+ISAYA +G  
Sbjct: 547 GYIIRNQQYSFSAWIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKV 606

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            +A++L+  + + G++PD +T T++LSAC +   V++A ++F+ M  ++G++P +EHY  
Sbjct: 607 REAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGL 666

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           MV +L+ A    +A   + +MP KP A++  +L    S     EL +++  HL E EP+N
Sbjct: 667 MVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDN 726

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG---GLQSFVAKD 430
           +GNY++++N Y+  G WDE  ++RE MK  GL K PG SWI+  G   G+  FVA D
Sbjct: 727 SGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVAND 783



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 192/401 (47%), Gaps = 38/401 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+ V+WN+++ GY Q G  EE   L  EM    +  P  VTV + L A      I  G +
Sbjct: 214 RNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGI-EPTRVTVSTCLSASANMGGIEEGKQ 272

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H   I + + +D  +  +++  Y   G ++YA  + D M +K  V              
Sbjct: 273 SHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXV-------------- 318

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            TWN +ISG VQ    E  + + + M+   ++ + VT+S++ S 
Sbjct: 319 -----------------TWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSA 361

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   NLK GKEI  Y +++  + +I +A+  +D YAK G +  A++VFD    + LI+W
Sbjct: 362 ATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILW 421

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             ++SAYA  G + +A+ LF EM    + P+ +T+  ++ +   +G V++A ++F  M  
Sbjct: 422 NTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQS 481

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
             GI P++  +  M+  L +     EA  F+ KM    ++P+A      L   +    + 
Sbjct: 482 S-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLH 540

Query: 361 LGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            G+ +  ++   +  +   +I   + ++Y++ G  ++A+RV
Sbjct: 541 FGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKAERV 581



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 191/424 (45%), Gaps = 42/424 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 113 RNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIF-PDNFVVPNVCKACGALQWSRFGRG 171

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V ++ +   +++ ++L  MY KCG LD AR + D + D++ V+             
Sbjct: 172 VHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVA------------- 218

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WNA++ G VQN  +E  + L+ EM+  G+ P  VT+S+  S 
Sbjct: 219 ------------------WNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSA 260

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H   + N    +  + T+I++ Y   G +  A+ +FD    +  + W
Sbjct: 261 SANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTW 320

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +IS Y   G   +A+ +   M    ++ D VT + ++SA   +  +    +I      
Sbjct: 321 NLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEI-QCYCI 379

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELG 362
           ++G++  +   +  V + ++   I  A + V    V+    +W  LL   + SG   E  
Sbjct: 380 RHGLESDIVLASTAVDMYAKCGSIVNAKK-VFDSTVQKDLILWNTLLSAYADSGLSGEAL 438

Query: 363 KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR-SWIEC 419
           +   +   E  P N  T N II++ L  + G+ +EA  +  QM+ SG+   P   SW   
Sbjct: 439 RLFYEMQLESVPPNVITWNLIILSLL--RNGQVNEAKEMFLQMQSSGI--FPNLISWTTM 494

Query: 420 SGGL 423
             GL
Sbjct: 495 MNGL 498



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 45/326 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  +++       + +I   L+  YAKC +L+ A+ L  ++  
Sbjct: 53  ILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRV 112

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII                 V  R GL      + G V             EM
Sbjct: 113 RNVFSWAAIIG----------------VKCRIGLG--EGALMGFV-------------EM 141

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +G+ P+   + ++          + G+ +HGY  K      ++VA+++ D Y K G L
Sbjct: 142 LENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVL 201

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    R+ + W A++  Y  +G   +A+ L +EM   GI+P  VT +  LSA 
Sbjct: 202 DDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSAS 261

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G +++     A  I N +     +  S+ ++ C VG++  A  I +         ++
Sbjct: 262 ANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGM-------IE 314

Query: 341 PSAKVWGALLYGASISGDVELGKFVC 366
                W  L+ G    G VE    +C
Sbjct: 315 KXXVTWNLLISGYVQQGLVEEAIHMC 340



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 12/222 (5%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  +++   +S L +N      L LV EM    +R        I     +  +L  G++I
Sbjct: 10  PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 69

Query: 197 HGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +K  + Y RN Y+ T ++  YAK   L  AQ +F + + R++  W AII      G
Sbjct: 70  HAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIG 129

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
               A+  F EML NGI PD      V  AC         W  F      Y  +  + H 
Sbjct: 130 LGEGALMGFVEMLENGIFPDNFVVPNVCKACGA-----LQWSRFGRGVHGYVAKAGLHHC 184

Query: 315 ACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYG 352
             +   L+    +   + +A +    +P + +A  W AL+ G
Sbjct: 185 VFVASSLADMYGKCGVLDDARKVFDYIPDR-NAVAWNALMVG 225


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 253/463 (54%), Gaps = 33/463 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++ ++W++M+ G++Q G  ++   LF +M  S  L P   T+V V+ AC  +  IV G +
Sbjct: 283 KNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGEL-PSEFTLVGVINACSDACAIVEGRQ 341

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H + ++   ++ L++ +AL+ MYAKCGS+  AR                          
Sbjct: 342 MHGYSLKLGYELQLYVLSALVDMYAKCGSIVDAR-------------------------- 375

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                  F+ +++P +  W ++I+G VQN  +E  L+L  +MQ  GV PN +T++S+   
Sbjct: 376 -----KGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKA 430

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S+ + L  GK++H   +K  +   I + +A+   YAK G L    R+F R   R +I W
Sbjct: 431 CSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISW 490

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+IS  + +G  ++ + LF +M   G +PD VTF  +LSAC+H GLVD+ W  F  M  
Sbjct: 491 NAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFD 550

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           ++ I P+VEHYACMV +LSRA ++ EA EF+    V     +W  LL  +    D +LG 
Sbjct: 551 EFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGA 610

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           +  + L E+    +  Y++++++Y+  G+W++ +RVR  MK  G+ K PG SWIE     
Sbjct: 611 YAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSLT 670

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGY-VLLDEVEEES 465
             FV  D    + ++I L L+ L  LM++EGY  LLD +  E+
Sbjct: 671 HVFVVGDNMHPQIDEIRLGLKLLTKLMKDEGYQPLLDSLPPET 713



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 206/439 (46%), Gaps = 71/439 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTV-VSVLQACGQSSDIV 59
           M +R+ VSW +MI+GY+     +E   LF+ M +    + +   V  SVL A      + 
Sbjct: 177 MPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVN 236

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G +VH+  +++ +   + + NAL+ MY KCGSL+ A    +   +K+ +++SA+++G+ 
Sbjct: 237 TGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFA 296

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G  +KA+ LF                                +M  SG  P+  T+  
Sbjct: 297 QFGDSDKALKLFY-------------------------------DMHQSGELPSEFTLVG 325

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + +  S    +  G+++HGY++K  Y+  +YV +A++D YAK G +  A++ F+  +   
Sbjct: 326 VINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPD 385

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HS 288
           +++WT+II+ Y  +GD   A++L+ +M   G+ P+ +T  +VL AC+           H+
Sbjct: 386 VVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHA 445

Query: 289 GLVDKAWD----IFNAMSGQYGIQPSVE---------------HYACMVGVLSRARRISE 329
           G++   +     I +A+S  Y    S++                +  M+  LS+  R +E
Sbjct: 446 GIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNE 505

Query: 330 ATEFVSKMPV---KPSAKVWGALLYGASISGDVELG----KFVCDHLFEIEPENTGNYII 382
             E   KM +   KP    +  LL   S  G V+ G    K + D  F I P    +Y  
Sbjct: 506 GLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDE-FNIAP-TVEHYAC 563

Query: 383 MANLYSQAGRWDEADRVRE 401
           M ++ S+AG+  EA    E
Sbjct: 564 MVDILSRAGKLHEAKEFIE 582



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 174/364 (47%), Gaps = 35/364 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYE---ECKALFREM-LNSPVLRPDGVTVVSVLQACGQSS 56
           ++ +D+VSWN +I  +SQ   +        LFR++ +    + P+  T+  V  A    S
Sbjct: 71  INNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLS 130

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D   G + H   +++    D++  ++L+ MY K G +  AR L DEM +++ VS++ +IS
Sbjct: 131 DSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMIS 190

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY      ++A +LF++M                   RHE            G   N   
Sbjct: 191 GYASQELADEAFELFKLM-------------------RHE----------EKGKNENEFV 221

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +S+ S  + +  +  G+++H  A+KN     + VA A++  Y K G L  A + F+   
Sbjct: 222 FTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSG 281

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++ I W+A+++ +A  GD+ KA+ LF +M  +G  P   T   V++AC+ +  + +   
Sbjct: 282 NKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQ 341

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           + +  S + G +  +   + +V + ++   I +A +    +  +P   +W +++ G   +
Sbjct: 342 M-HGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQ-QPDVVLWTSIITGYVQN 399

Query: 357 GDVE 360
           GD E
Sbjct: 400 GDYE 403



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 144/323 (44%), Gaps = 40/323 (12%)

Query: 43  VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE 102
           + V+  L  C +   +  G  +H  ++ +       I N+LI +YAKC     A  + D 
Sbjct: 11  LQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDS 70

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA---VL 159
           +++KD VS                               WN +I+   Q   H     V+
Sbjct: 71  INNKDVVS-------------------------------WNCLINAFSQQQAHAPSLHVM 99

Query: 160 DLVRE--MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            L R+  M    + PNA T++ +F+  S  S+ + G++ H  AVK     +++ A+++++
Sbjct: 100 HLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLN 159

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN--NGIQPDP 275
            Y KTG +  A+ +FD    R+ + W  +IS YA+   A +A  LF  M +   G   + 
Sbjct: 160 MYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENE 219

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
             FT+VLSA     LV+    + ++++ + G+   V     +V +  +   + +A +   
Sbjct: 220 FVFTSVLSALTCYMLVNTGRQV-HSLAMKNGLVCIVSVANALVTMYVKCGSLEDALK-TF 277

Query: 336 KMPVKPSAKVWGALLYGASISGD 358
           ++    ++  W A++ G +  GD
Sbjct: 278 ELSGNKNSITWSAMVTGFAQFGD 300


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 163/467 (34%), Positives = 254/467 (54%), Gaps = 13/467 (2%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           + S I  +S  G +    AL  +ML+  +L P   T+ + L AC     +  G  +H + 
Sbjct: 90  YTSAIHAHSSRGLHLPGLALLSDMLSEGLL-PTAHTLSASLPAC---RGLSLGRALHAYA 145

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            +  +  D ++  AL+ MYA+ G    ARAL DEM D   VS +A+++ Y   G ++ A 
Sbjct: 146 FKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDAR 205

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  + R     WNA+I G  Q+ +    L L R M  S   P+ VT+  + S  +   
Sbjct: 206 RLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLG 265

Query: 189 NLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            ++ GK +H Y   +R    N+ VATA++D Y K G L  A  VF     + +++W A+I
Sbjct: 266 TVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMI 325

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           + YA HGD+ KA+ +F ++ + G+ P  +TF  +L+AC+HSGLV++    F +M  +YGI
Sbjct: 326 NGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGI 385

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
            P +EHY CMV +L RA  I EA   V  + + P A +W +LL    +  ++ LG+ + D
Sbjct: 386 DPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIAD 445

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFV 427
            L      N+G YI+++N+Y+  G+W+E  RVR  MK SG+ K PG S IE    +  FV
Sbjct: 446 FLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFV 505

Query: 428 AKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
           A D S   +++IY +L+++  L++E G+V         LDE  +E A
Sbjct: 506 AGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKA 552



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D + WN+MI GY+Q G   E   LFR ML S    PD VTVV VL A  Q   +  
Sbjct: 211 LPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSA-EPDEVTVVLVLSAVAQLGTVES 269

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H++V  S  +++++ +  AL+ MY KCGSL+ A A+   + +KD V ++A+I+GY 
Sbjct: 270 GKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYA 329

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           +HG   KA+++F  ++  GL   +    GL+    H  +++
Sbjct: 330 MHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVE 370



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 133/343 (38%), Gaps = 69/343 (20%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+L AC  +       E+H  V+   +  D  +   L   YA  G LD++  LL    D 
Sbjct: 29  SLLAACSTARR---ASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDP 85

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
             + Y++ I  +   G           +  PGL+                    L+ +M 
Sbjct: 86  TTIFYTSAIHAHSSRG-----------LHLPGLA--------------------LLSDML 114

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID--------- 217
           + G+ P A T+S+          L  G+ +H YA K     + YVATA++          
Sbjct: 115 SEGLLPTAHTLSASLPA---CRGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAA 171

Query: 218 ----------------------TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
                                  YA  G L  A+R+FD    +  I W A+I  Y  HG 
Sbjct: 172 AARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGK 231

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
            ++A+ LF  ML +  +PD VT   VLSA A  G V+    + + +     +Q +V    
Sbjct: 232 PNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVAT 291

Query: 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +V +  +   + +A      +  K    VW A++ G ++ GD
Sbjct: 292 ALVDMYCKCGSLEDAVAVFHGIGNK-DIVVWNAMINGYAMHGD 333



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 61/129 (47%)

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
           AVL  V     SG    A+T     SL +  S  +   E+H   V+   D +  VA  + 
Sbjct: 4   AVLPSVAPASDSGGHHGALTADRAASLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQ 63

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YA +G L  +  +  R K  + I +T+ I A+++ G     ++L ++ML+ G+ P   
Sbjct: 64  RAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAH 123

Query: 277 TFTAVLSAC 285
           T +A L AC
Sbjct: 124 TLSASLPAC 132


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 264/473 (55%), Gaps = 40/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D++SW ++IAGY+Q   + +   L R+ +    +  D + + S+L AC        
Sbjct: 413 MPEKDLISWTTIIAGYAQNECHLDALNLLRK-VQLEKMDVDPMMIGSILLACSGLKSEKL 471

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H +V++  +  D+ I NA++ +Y +   +DYAR + + ++ KD VS++++I+  + 
Sbjct: 472 IKEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVH 530

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A++LF               + L++ N                + P+ +T+ S+
Sbjct: 531 NGLAIEALELF---------------NSLIETN----------------IEPDLITLVSV 559

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  S+LK GKEIHG+ ++  +     +A +++D YA+ G +  A+ +F+  K R L
Sbjct: 560 LYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDL 619

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+WT++I+A   HG    A+ LF++M +  + PD +TF A+L AC+HSGLV +    F  
Sbjct: 620 ILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEI 679

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P  EHYAC+V +L+R+  + EA  FV  MP++PSA+VW ALL    I  + +
Sbjct: 680 MKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNND 739

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     L ++  EN+GNY++++N ++  GRW++ + VR  MK + L K PG SWIE  
Sbjct: 740 LGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVE 799

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEESA 466
             + +F+A+D S  +   IYL L +   L++E+G        V  D  EEE  
Sbjct: 800 NKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKT 852



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 205/430 (47%), Gaps = 72/430 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D VSWN++++G  Q   Y +    F++M +S   +PD V+V++++ A G+S++++ GME
Sbjct: 315 KDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQ-KPDQVSVLNMIAASGRSANLLAGME 373

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH + I+  I  ++ I N+LI MY KC  + Y  +  + M +KD +S++ II+GY     
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGY----- 428

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                                      QN  H   L+L+R++Q   +  + + I SI   
Sbjct: 429 --------------------------AQNECHLDALNLLRKVQLEKMDVDPMMIGSILLA 462

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   + K  KEIHGY +K     +I +  AI++ Y +   +  A+ VF+    + ++ W
Sbjct: 463 CSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSW 521

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI--FNAM 301
           T++I+    +G A +A+ LFN ++   I+PD +T  +VL A A    + K  +I  F   
Sbjct: 522 TSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIR 581

Query: 302 SGQY--GIQPS--VEHYACMVGVLSRARRI-------------------------SEATE 332
            G +  G+  +  V+ YA   G +  AR I                          +A +
Sbjct: 582 KGFFLEGLIANSLVDMYA-RCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAID 640

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKF---VCDHLFEIEPENTGNYIIMANL 386
             SKM    V P    + ALLY  S SG V  GK    +  + +++EP    +Y  + +L
Sbjct: 641 LFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPW-PEHYACLVDL 699

Query: 387 YSQAGRWDEA 396
            +++   +EA
Sbjct: 700 LARSNSLEEA 709



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D VSWNS+I+ +   G   E  +LFR M    V   +  T VS LQAC   + I  
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGV-ESNTYTFVSALQACEGPTFIKI 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  +++S+   D+++ NALI MYA CG ++ A  +   M  KD VS++ ++S    
Sbjct: 270 GRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLS---- 325

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                      G+VQN+ +   ++  ++MQ SG +P+ V++ ++
Sbjct: 326 ---------------------------GMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNM 358

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +     +NL  G E+H YA+K+  D N+++  ++ID Y K   +      F+    + L
Sbjct: 359 IAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDL 418

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           I WT II+ YA +     A++L  ++    +  DP+   ++L AC+
Sbjct: 419 ISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 133/289 (46%), Gaps = 30/289 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R I +WN+MI      G Y E   L++EM    V   D  T   VL+ACG   +   
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGV-SLDAFTFPCVLKACGAFKERRL 166

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H   ++      +++CNALI MYAKCG L  AR L D              SG   
Sbjct: 167 GCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFD--------------SG--- 209

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                       +M++    +WN++IS  V        L L R MQ  GV  N  T  S 
Sbjct: 210 ------------LMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSA 257

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  + +K G+ IH   +K+ +  ++YV+ A+I  YA  G +  A+RVF     +  
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + W  ++S    +   S A++ F +M ++G +PD V+   +++A   S 
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSA 366



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%)

Query: 22  YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWIC 80
           ++     F + L +    P        L+ C     +  G ++H   +++   +D +++ 
Sbjct: 26  FQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLD 85

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
              + MY KCGS   A  + D+MS++                                + 
Sbjct: 86  TKFVHMYGKCGSFYDAVKVFDKMSERT-------------------------------IF 114

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           TWNA+I   V   R+   ++L +EM+  GV  +A T   +      F   + G EIHG A
Sbjct: 115 TWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVA 174

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSLIIWTAIISAYAAHGDASK 258
           VK  Y   ++V  A+I  YAK G L GA+ +FD    +    + W +IISA+   G++ +
Sbjct: 175 VKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           A+SLF  M   G++ +  TF + L AC
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQAC 261


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 250/443 (56%), Gaps = 1/443 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +++ + VSW S+I G +Q GF EE   LF +M   PV   D  T+ +VL  C    DI  
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPV-ASDQFTLATVLGVCLSQKDISI 365

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   I   +   + + NAL+ MYAKCG +  A    + M  +D +S++A+I+ +  
Sbjct: 366 GEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQ 425

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VEKA + F  M    + +WN++++  +Q    E  L +  +M   GV+ + +T S+ 
Sbjct: 426 AGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTS 485

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + L  G +I   A K  +  N+ VA +++  Y++ G +  AQ++F     ++L
Sbjct: 486 ISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNL 545

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+++ YA +G   K + +F +MLN G  PD +++ +VLS C+HSG V +    F +
Sbjct: 546 VSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLS 605

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  +GI P  EH+ CMV +L RA ++ +A   +++MP KP+A +WGALL    I G+ +
Sbjct: 606 MTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTK 665

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +    +L E++ E  G+Y ++AN+YS++G+      VR+ M++ G+ K PG SWIE  
Sbjct: 666 LAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVD 725

Query: 421 GGLQSFVAKDTSGDKSEQIYLIL 443
             +  F   DT+  + + ++ +L
Sbjct: 726 NRVHVFTVDDTNHPQIKDVHRML 748



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 197/413 (47%), Gaps = 15/413 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVT--------VVSVLQACGQSS 56
           ++ SWN+MI+G++  G   E + LF +M     +  + +         + + ++A G   
Sbjct: 69  NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLG 128

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
            +   +++H F  +    +D  +  +++ MY KCG++D+A+ +     +     ++++I 
Sbjct: 129 YLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIY 188

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY  +G V+KA++LF  M      +WN +IS L Q+      L+   EM   G RPN++T
Sbjct: 189 GYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMT 248

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            +S+ S  +   +L+ G  +H   V+     ++Y    +ID YAK G L  A++VFD   
Sbjct: 249 YASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLT 308

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
             + + WT++I   A  G   +A+ LFN+M    +  D  T   VL  C     +    +
Sbjct: 309 EHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG-E 367

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
             +A +   G+  SV     +V + ++   + +A      MP++     W A++   S +
Sbjct: 368 QLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIIS-WTAMITAFSQA 426

Query: 357 GDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           GDVE  +      F+  PE N  ++  M   Y Q G W+E  +V  QM   G+
Sbjct: 427 GDVEKAR----EYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGV 475



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 178/389 (45%), Gaps = 65/389 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN+MI+  SQ GF  E    F EM N    RP+ +T  SVL AC    D+ +
Sbjct: 206 MPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQG-FRPNSMTYASVLSACTSIYDLEW 264

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  ++     +D++    LI MYAKCG L+ AR + D +++ + VS++++I G   
Sbjct: 265 GAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQ 324

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF E+A+ LF                                +M+   V  +  T++++
Sbjct: 325 AGFQEEALVLFN-------------------------------QMREVPVASDQFTLATV 353

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +     ++  G+++H + +    D ++ VA A++  YAK G +  A   F+    R +
Sbjct: 354 LGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDI 413

Query: 241 IIWTAIISAYAAHGDASKAVSLFN-------------------------------EMLNN 269
           I WTA+I+A++  GD  KA   F+                               +ML  
Sbjct: 414 ISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLRE 473

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           G++ D +TF+  +SACA   ++     I  A + + G   +V     +V + SR  +I E
Sbjct: 474 GVKTDWITFSTSISACADLAVLILGNQIL-AQAEKLGFSSNVSVANSVVTMYSRCGQIEE 532

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGD 358
           A +  S + +K     W A++ G + +G 
Sbjct: 533 AQKMFSSIVMKNLVS-WNAMMAGYAQNGQ 560



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 165/364 (45%), Gaps = 33/364 (9%)

Query: 49  LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE 108
           ++ C     I    ++H  +I   +K  +++ N L+ MY+ CG +  A  +   +   + 
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
            S++ +ISG+   G + +A  LF+ M      +WN+++SG   N   EA +      +AS
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATI------KAS 124

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           G                    LK   ++HG+A K  +  +  V T+++D Y K G +  A
Sbjct: 125 G----------------SLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFA 168

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           Q+VF R    SL  W ++I  Y+ +G   KA+ LF +M     + D V++  ++S  +  
Sbjct: 169 QKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKM----PERDTVSWNTMISILSQH 224

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWG 347
           G   +  + F  M  Q G +P+   YA ++   +    +       +++  ++P   V+ 
Sbjct: 225 GFGAETLNTFLEMWNQ-GFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYA 283

Query: 348 --ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
              L+   +  G +E  + V D L E    N  ++  +    +QAG  +EA  +  QM+E
Sbjct: 284 GCGLIDMYAKCGRLESARQVFDGLTE---HNAVSWTSLIGGVAQAGFQEEALVLFNQMRE 340

Query: 406 SGLA 409
             +A
Sbjct: 341 VPVA 344


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 251/456 (55%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V+W ++I+GYSQ     +   LF +ML      P+  T+ SV++A         
Sbjct: 112 MPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFG-FSPNEFTLSSVIKAAAAERRGCC 170

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F ++     ++ + +AL+ +Y + G +D A+ + D +  +++V           
Sbjct: 171 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV----------- 219

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               +WNA+I+G  +    E  L+L + M   G RP+  + +S+
Sbjct: 220 --------------------SWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASL 259

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   S    L+ GK +H Y +K+      +    ++D YAK+G +H A+++FDR   R +
Sbjct: 260 FGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDV 319

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W ++++AYA HG  ++AV  F EM   GI+P+ ++F +VL+AC+HSGL+D+ W  +  
Sbjct: 320 VSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYEL 379

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M    GI     HY  +V +L RA  ++ A  F+ +MP++P+A +W ALL    +  + E
Sbjct: 380 MKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTE 438

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG +  +H+FE++P++ G ++I+ N+Y+  GRW++A RVR++MKESG+ K P  SW+E  
Sbjct: 439 LGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIE 498

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D    + E+I    E +L  ++E GYV
Sbjct: 499 NAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 534



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 31/247 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L+ C     +  G  VH  +I+S  + DL + N L+ MYAKCGSL+ AR + D+M ++
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D V+++ +ISGY  H     A+ LF  M R G S                          
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFS-------------------------- 149

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
                PN  T+SS+    +       G ++HG+ VK  +D N++V +A++D Y + G + 
Sbjct: 150 -----PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 204

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            AQ VFD  + R+ + W A+I+ +A      KA+ LF  ML  G +P   ++ ++  AC+
Sbjct: 205 DAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACS 264

Query: 287 HSGLVDK 293
            +G +++
Sbjct: 265 STGFLEQ 271


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 228/393 (58%), Gaps = 3/393 (0%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H+    S  + D + C  LI  YAK G+L  AR + DEMS +D   ++A+I+GY   G 
Sbjct: 97  LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 156

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFS 182
           ++ AM+LF  M R  +++W  VISG  QN  +   L +   M+    V+PN +T+ S+  
Sbjct: 157 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 216

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLI 241
             ++   L+ G+ + GYA +N +  NIYV  A I+ Y+K G +  A+R+F+     R+L 
Sbjct: 217 ACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLC 276

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W ++I + A HG   +A++LF +ML  G +PD VTF  +L AC H G+V K  ++F +M
Sbjct: 277 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 336

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              + I P +EHY CM+ +L R  ++ EA + +  MP+KP A VWG LL   S  G+VE+
Sbjct: 337 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEI 396

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW-IECS 420
            +   + LF++EP N GN +IM+N+Y+   +WD   R+R+ MK+  + K  G S+ +E  
Sbjct: 397 AEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVG 456

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
             +  F  +D S  +S +IY +LE +   M+ E
Sbjct: 457 VDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKLE 489



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 121/265 (45%), Gaps = 40/265 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++ SW ++I+G+SQ G Y E   +F  M     ++P+ +TVVSVL AC    ++  
Sbjct: 167 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 226

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYM 119
           G  +  +  E+    ++++CNA I MY+KCG +D A+ L +E+ + ++  S++++I    
Sbjct: 227 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 286

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            HG                               +H+  L L  +M   G +P+AVT   
Sbjct: 287 THG-------------------------------KHDEALTLFAQMLREGEKPDAVTFVG 315

Query: 180 IFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           +     H   +  G+E+     + ++    +     +ID   + G L   Q  +D  K  
Sbjct: 316 LLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKL---QEAYDLIKTM 372

Query: 239 SL----IIWTAIISAYAAHGDASKA 259
            +    ++W  ++ A + HG+   A
Sbjct: 373 PMKPDAVVWGTLLGACSFHGNVEIA 397



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 38/238 (15%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
           +L YAR L D   +     Y+ +I  Y VH                              
Sbjct: 24  NLVYARKLFDHHQNSCTFLYNKLIQAYYVH------------------------------ 53

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
           +  HE+++ L   +   G+RP+  T + IF+  + FS+ +  + +H    ++ ++ + + 
Sbjct: 54  HQPHESIV-LYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 112

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
            T +I  YAK G L  A+RVFD    R + +W A+I+ Y   GD   A+ LF+ M    +
Sbjct: 113 CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNV 172

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
                ++T V+S  + +G   +A  +F  M     ++P+   +  +V VL     + E
Sbjct: 173 ----TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN---HITVVSVLPACANLGE 223



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 29/181 (16%)

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA- 286
           A+++FD  +     ++  +I AY  H    +++ L+N +  +G++P   TF  + +A A 
Sbjct: 28  ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 87

Query: 287 ----------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
                     HS      ++     S  +     +  YA  +G L  ARR+ +       
Sbjct: 88  FSSARPLRLLHSQFFRSGFE-----SDSFCCTTLITAYA-KLGALCCARRVFDEMS---- 137

Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDE 395
              K    VW A++ G    GD++        LF+  P +N  ++  + + +SQ G + E
Sbjct: 138 ---KRDVPVWNAMITGYQRRGDMKAAM----ELFDSMPRKNVTSWTTVISGFSQNGNYSE 190

Query: 396 A 396
           A
Sbjct: 191 A 191


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/470 (34%), Positives = 254/470 (54%), Gaps = 39/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN+MI+G  + G   E   LF  ++ S     D  T+VS+LQ C Q++ +  
Sbjct: 292 MPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSG-GFDLTTIVSLLQGCSQTASLAT 350

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   I S  + +L +  A++ +Y+KCGSL                           
Sbjct: 351 GKILHGCAIRS-FESNLILSTAIVDLYSKCGSL--------------------------- 382

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
               ++A  +F  MK   + TW A++ GL QN   E  L L  +MQ  G+  N+VT  S+
Sbjct: 383 ----KQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSL 438

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRS 239
               +H  +LK G+ IHG+  +  +  +I   TA++D YAK G ++ A+R+F      + 
Sbjct: 439 VHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKD 498

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++W ++I+ Y  HG   +AV ++++M+  G++P+  TF ++LSAC+HS LV++   +FN
Sbjct: 499 VVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFN 558

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   + I+P  +HYAC+V +LSRA R  EA   + KMP +P   V  ALL G     ++
Sbjct: 559 SMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNI 618

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
            LG    D L  ++  N G YI+++N+Y++A RWD+ D +R  M+  GL K PG S +E 
Sbjct: 619 NLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVET 678

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
              + +F A D S    E+IY  LE L   +   GYV     +L +V+EE
Sbjct: 679 GNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEE 728



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 212/441 (48%), Gaps = 73/441 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V WNS+I GY Q G ++    LF EM  S + +P  +T+ S++QACG   ++  
Sbjct: 191 MPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGI-KPSPITMTSLIQACGGIGNLKL 249

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +V+   +  D+ +  + + MY+K G ++ AR +  +M  ++ VS++A+ISG + 
Sbjct: 250 GKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVR 309

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V ++ DLF  + R                       DL              TI S+
Sbjct: 310 NGLVGESFDLFHRLVRS------------------SGGFDL-------------TTIVSL 338

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  ++L  GK +HG A+++ ++ N+ ++TAI+D Y+K G L  A  VF+R K R++
Sbjct: 339 LQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNV 397

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA++   A +G A  A+ LF +M   GI  + VTF +++ +CAH G + +   I   
Sbjct: 398 ITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGH 457

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD-- 358
           +  + G    + +   +V + ++  +I+ A    S   +     +W +++ G  + G   
Sbjct: 458 LF-RLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGY 516

Query: 359 ---------VELG------KFV-----CDH---------LF-------EIEPENTGNYII 382
                    +E G       F+     C H         LF        I P    +Y  
Sbjct: 517 QAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEK-HYAC 575

Query: 383 MANLYSQAGRWDEADRVREQM 403
           + +L S+AGR++EA  + E+M
Sbjct: 576 LVDLLSRAGRFEEAQALIEKM 596



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 186/428 (43%), Gaps = 75/428 (17%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M+ GY Q G Y E   LF  ++ S  L  D  +    L+AC  S D   GME+ +  +
Sbjct: 99  NAMLCGYLQSGRYRETLELF-GLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAV 157

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           E  ++ + ++ +++I    K G +  A+ + D M +KD V                    
Sbjct: 158 EKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVV-------------------- 197

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
                       WN++I G VQ    +    L  EM  SG++P+ +T++S+        N
Sbjct: 198 -----------CWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGN 246

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           LK GK +HGY +      +I V T+ +D Y+K G +  A+ VF +   R+L+ W A+IS 
Sbjct: 247 LKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISG 306

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS--------------------- 288
              +G   ++  LF+ ++ +    D  T  ++L  C+ +                     
Sbjct: 307 CVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNL 366

Query: 289 -------------GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
                        G + +A  +FN M  +     +V  +  M+  L++     +A    +
Sbjct: 367 ILSTAIVDLYSKCGSLKQATFVFNRMKDR-----NVITWTAMLVGLAQNGHAEDALRLFA 421

Query: 336 KMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENTGNYIIMANLYSQAG 391
           +M    +  ++  + +L++  +  G ++ G+ +  HLF +    +  N   + ++Y++ G
Sbjct: 422 QMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCG 481

Query: 392 RWDEADRV 399
           + + A+R+
Sbjct: 482 KINLAERI 489



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 37/307 (12%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S ++++    H  +I + +  D ++   L+  Y+   SL+ AR + D+      +  +A+
Sbjct: 42  SKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAM 101

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           + GY+  G   + ++LF +M+                           R ++        
Sbjct: 102 LCGYLQSGRYRETLELFGLMRS--------------------------RNLEVD------ 129

Query: 175 VTISSIFSLFSHFSNL--KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            + S  F+L +  S+L  + G EI   AV+   ++N +V +++I    K G +  AQRVF
Sbjct: 130 -SCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVF 188

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    + ++ W +II  Y   G    A  LF EM  +GI+P P+T T+++ AC   G + 
Sbjct: 189 DGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLK 248

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
               +   + G  G+   +      V + S+   I  A     KMP +     W A++ G
Sbjct: 249 LGKCMHGYVLG-LGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVS-WNAMISG 306

Query: 353 ASISGDV 359
              +G V
Sbjct: 307 CVRNGLV 313



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 9/218 (4%)

Query: 177 ISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           I +  SL    S NL   K  H   + N    + +VAT ++  Y+    L  A+ VFD+F
Sbjct: 31  IHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQF 90

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
                ++  A++  Y   G   + + LF  M +  ++ D  + T  L ACA S   +   
Sbjct: 91  FQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGM 150

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           +I ++ + + G++ +    + M+  L +  +I EA      MP K     W +++ G   
Sbjct: 151 EIISS-AVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNK-DVVCWNSIIGGYVQ 208

Query: 356 SG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
           +G  DV    F   H   I+P      I M +L    G
Sbjct: 209 AGCFDVAFQLFFEMHGSGIKPSP----ITMTSLIQACG 242


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 244/455 (53%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D VSWN++IA   Q G Y++    F EML    ++PD  T  SVL+AC     + +
Sbjct: 454 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG-MKPDDFTYGSVLKACAALRSLEY 512

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH+ VI+S +  D ++ + ++ MY KCG +D A+ L D +  +  VS          
Sbjct: 513 GLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS---------- 562

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA++SG   N   E       EM   G++P+  T +++
Sbjct: 563 ---------------------WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 601

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ + ++ GK+IHG  +K     + Y+++ ++D YAK G +  +  VF++ + R  
Sbjct: 602 LDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDF 661

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  YA HG   +A+ +F  M    + P+  TF AVL AC+H GL D     F+ 
Sbjct: 662 VSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHL 721

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  Y ++P +EH+ACMV +L R++   EA +F++ MP +  A +W  LL    I  DVE
Sbjct: 722 MTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVE 781

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +    ++  ++P+++  YI+++N+Y+++G+W +  R R  +K+  L K PG SWIE  
Sbjct: 782 IAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 841

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F+  D +  +S ++Y +L  L+G M+  GY
Sbjct: 842 SEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 876



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 142/283 (50%), Gaps = 32/283 (11%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M+ G  + G   E   LF+ M+ S + R D V++  V  AC ++     G +VH   I
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSI-RFDVVSLSGVFSACAETKGYFQGQQVHCLAI 420

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +S   +D+ + NA++ +Y KC                      A++  Y++         
Sbjct: 421 KSGFDVDICVNNAVLDLYGKC---------------------KALMEAYLI--------- 450

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
            FQ MK+    +WNA+I+ L QN  ++  +    EM   G++P+  T  S+    +   +
Sbjct: 451 -FQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 509

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L+ G  +H   +K+    + +VA+ ++D Y K G +  AQ++ DR  G+ ++ W AI+S 
Sbjct: 510 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 569

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           ++ + ++ +A   F+EML+ G++PD  TF  VL  CA+   ++
Sbjct: 570 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIE 612



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 32/288 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+VSWN++++GY Q G ++E   LF EM    V  PD  T   +L++C    ++  
Sbjct: 151 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGV-SPDRTTFAVLLKSCSALEELSL 209

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   +++ +++D+   +AL+ MY KC SLD A      M +++ VS+ A I+G   
Sbjct: 210 GVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG--- 266

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                        VQN ++   L+L  EMQ  G+  +  + +S 
Sbjct: 267 ----------------------------CVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 298

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S L  G+++H +A+KN++  +  V TAI+D YAK   L  A+R F      ++
Sbjct: 299 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTV 358

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
               A++      G   +A+ LF  M+ + I+ D V+ + V SACA +
Sbjct: 359 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 406



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 163/370 (44%), Gaps = 54/370 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +R+ VSW + IAG  Q   Y     LF EM  L   V +P   +  S  ++C   S +
Sbjct: 252 MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP---SYASAFRSCAAMSCL 308

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G ++H   I++    D  +  A++ +YAK  SL  AR     + +    + +A++ G 
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G   +AM LFQ M R                               S +R + V++S
Sbjct: 369 VRAGLGIEAMGLFQFMIR-------------------------------SSIRFDVVSLS 397

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +FS  +       G+++H  A+K+ +D +I V  A++D Y K   L  A  +F   K +
Sbjct: 398 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 457

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----HSGLVDK 293
             + W AII+A   +G     +  FNEML  G++PD  T+ +VL ACA       GL+  
Sbjct: 458 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVH 517

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE---ATEFVSKMPVKPSAKVWGALL 350
              I + +     +  +V    C  G++  A+++ +     + VS          W A+L
Sbjct: 518 DKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS----------WNAIL 567

Query: 351 YGASISGDVE 360
            G S++ + E
Sbjct: 568 SGFSLNKESE 577



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 12/263 (4%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL-------WICNAL 83
           E    P + P  VT   V Q+C Q+     G E       +H +M +       ++ N L
Sbjct: 46  EQQQPPPVAPARVTFSRVFQSCAQA-----GREALAAGRAAHARMVVSGFVPTAFVSNCL 100

Query: 84  IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWN 143
           + MYA+C     AR + D M  +D VS++ +++ Y   G +  A+ LF  M  P + +WN
Sbjct: 101 LQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWN 160

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A++SG  Q    +  +DL  EM   GV P+  T + +    S    L  G ++H  AVK 
Sbjct: 161 ALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT 220

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             + ++   +A++D Y K   L  A   F     R+ + W A I+    +    + + LF
Sbjct: 221 GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELF 280

Query: 264 NEMLNNGIQPDPVTFTAVLSACA 286
            EM   G+     ++ +   +CA
Sbjct: 281 IEMQRLGLGVSQPSYASAFRSCA 303



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 17/172 (9%)

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA-------VKNRYDRNIYVATAII 216
           + Q   V P  VT S +F      S  + G+E            V + +    +V+  ++
Sbjct: 47  QQQPPPVAPARVTFSRVFQ-----SCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLL 101

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             YA+      A+RVFD    R  + W  +++AY+  GD S AV+LF+ M +    PD V
Sbjct: 102 QMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD----PDVV 157

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
           ++ A++S     G+  ++ D+F  M+ + G+ P    +A ++   S    +S
Sbjct: 158 SWNALVSGYCQRGMFQESVDLFVEMA-RRGVSPDRTTFAVLLKSCSALEELS 208


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 244/469 (52%), Gaps = 43/469 (9%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            D+ SWN+++ GY +     +    F  M  +  P+   D +T+ + ++A G   ++  G 
Sbjct: 1063 DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI---DEITLATAIKASGCLINLKQGK 1119

Query: 63   EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            ++  + I+     DLW+ + ++ MY KCG +                             
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDM----------------------------- 1150

Query: 123  FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                A++LF  + RP    W  +ISG ++N   +  L +   M+ SGV+P+  T +++  
Sbjct: 1151 --PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 183  LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
              S  + L+ GK+IH   VK  Y  + +V T+++D Y K G +  A RVF +   R ++ 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268

Query: 243  WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
            W A++   A HG   +A++LF  M +NGIQPD VTF  VLSAC+HSGL  +A+  F+AM 
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328

Query: 303  GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
              YGI P +EHY+C+V  L RA RI EA   ++ MP K SA ++ ALL      GD E  
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388

Query: 363  KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
            K V D L  ++P ++  Y++++N+Y+ + +WD+    R  MK   + K PG SWI+    
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448

Query: 423  LQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEE 464
            +  FV  D S  ++  IY  +E L+  +REEG       + LLD  EEE
Sbjct: 1449 VHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEE 1497



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 192/407 (47%), Gaps = 46/407 (11%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---IVFG 61
            D++SWN+MI+ Y+Q     E    FR++L    L+PD  T+ SVL+AC    +      G
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYFTLG 1017

Query: 62   MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +VH + I+  I  D ++  ALI +Y+K G +D A  LL    D D              
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFD-------------- 1063

Query: 122  GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                             L++WNA++ G +++N+    L+    M   G+  + +T+++  
Sbjct: 1064 -----------------LASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAI 1106

Query: 182  SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                   NLK GK+I  YA+K  ++ +++V++ ++D Y K G +  A  +F        +
Sbjct: 1107 KASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEV 1166

Query: 242  IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-NA 300
             WT +IS Y  +GD   A+S+++ M  +G+QPD  TF  ++ A +    +++   I  N 
Sbjct: 1167 AWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV 1226

Query: 301  MSGQYGIQPSVEHY--ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +   Y    S++H+    +V +  +   + +A     KM V+     W A+L G +  G 
Sbjct: 1227 VKLDY----SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGH 1281

Query: 359  VE--LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            V+  L  F       I+P+    +I + +  S +G + EA +  + M
Sbjct: 1282 VDEALNLFRTMQSNGIQPDKV-TFIGVLSACSHSGLFSEAYKYFDAM 1327



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 55/337 (16%)

Query: 2    SKRDIVSWNSMIAGYSQ--GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
            S RD+V+WNS++A Y+Q     YE     FR      +LR  G ++  +  A      ++
Sbjct: 673  SDRDLVTWNSILAAYAQFADSSYENVLEGFRLF---GLLREFGFSITRLTLAPLLKLCLL 729

Query: 60   FGM-----EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
             G       VH + ++   ++DL++  AL+ +Y K G +  AR L D+M ++D V ++ +
Sbjct: 730  SGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVM 789

Query: 115  ISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAVISGL---VQNNRHE----------- 156
            +  Y+ + F ++A+  F    R    P  S  + VI G+   V NNR             
Sbjct: 790  LKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMK 849

Query: 157  ---------------------------AVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
                                       A +D  + +  S +  ++VT+  I S      +
Sbjct: 850  MFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 190  LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
            L  G++IH   +K+ +   + V+ ++++ Y+K G ++ A++ F       LI W  +IS+
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 250  YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            YA +    +A+  F ++L +G++PD  T  +VL AC+
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 26/219 (11%)

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +D+  G   H  ++ S    D ++ N LI MY+KCGSL  AR + D+ SD+D V++++I+
Sbjct: 625 ADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           + Y    F +              S++  V+ G         +  L+RE   S  R   +
Sbjct: 685 AAYA--QFAD--------------SSYENVLEGF-------RLFGLLREFGFSITR---L 718

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T++ +  L      ++  + +HGYAVK  ++ +++V+ A+++ Y K G +  A+ +FD+ 
Sbjct: 719 TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKM 778

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
             R  ++W  ++ AY  +    +A+  F+    +G  PD
Sbjct: 779 PERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 38/271 (14%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            +S+ D V+W +MI+GY + G  +   +++  M  S V +PD  T  ++++A    + +  
Sbjct: 1160 ISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV-QPDEYTFATLIKASSCLTALEQ 1218

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G ++H  V++    +D ++  +L+ MY KCGS+  A  +  +M  +  V ++A++ G   
Sbjct: 1219 GKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQ 1278

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            HG V++A++LF                               R MQ++G++P+ VT   +
Sbjct: 1279 HGHVDEALNLF-------------------------------RTMQSNGIQPDKVTFIGV 1307

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDR--FK 236
             S  SH S L      +  A+   Y     I   + ++D   + G +  A+ V     FK
Sbjct: 1308 LSACSH-SGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFK 1366

Query: 237  GRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
              S  ++ A++ A    GDA  A  + +++L
Sbjct: 1367 A-SASMYRALLGACRTKGDAETAKRVADKLL 1396



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 53/334 (15%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M +RD V WN M+  Y +  F +E    F     S    PD   +  V+   G +SD+  
Sbjct: 778  MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSG-FXPDFSNLHCVIG--GVNSDVSN 834

Query: 61   GMEVHNFVIESH-IKM-------DLWICNALIGMYAKCG----SLDYARALLDEMSDKDE 108
              + H   ++++ +KM       +++  N  +  +   G    ++D  + LL      D 
Sbjct: 835  NRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDS 894

Query: 109  VSYSAIIS----------GYMVHGFVEKA------------MDLFQ-----------VMK 135
            V+   I+S          G  +H  V K+            M+++             + 
Sbjct: 895  VTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 136  RPGLS--TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN---L 190
             P L   +WN +IS   QNN     +   R++   G++P+  T++S+    S        
Sbjct: 955  SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYF 1014

Query: 191  KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
              G ++H YA+K     + +V+TA+ID Y+K G +  A+ +        L  W AI+  Y
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 251  AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
                 + KA+  F+ M   GI  D +T    + A
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 254/469 (54%), Gaps = 36/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+++G S  G+   C   F  M      +P+ VT++SV+ AC     +  
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V++  +     + N+LI MY K G                             
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLG----------------------------- 290

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             F++ A  LF+ M    L +WN+++     N   E  +DL   M+ +G+ P+  T+ ++
Sbjct: 291 --FLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVAL 348

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +     +  + IH Y  +  ++ +I +ATA+++ YAK G L+ ++ +F+  K R  
Sbjct: 349 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT 408

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+++ YA H    +A+ LF+ M+  G++ D VTFT +LSAC+HSGLV++    F  
Sbjct: 409 IAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEI 468

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  Y ++P ++HY+CMV +L R+ R+ +A E +  MP++PS+ VWGALL    + G+VE
Sbjct: 469 MSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVE 528

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V + L  ++P +  NYI+++N+YS AG W  A +VR  MKE  L + PG S+IE  
Sbjct: 529 LGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHG 588

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  FV  D    +S++I+  LE L+  + E G       +L +++EE
Sbjct: 589 NKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEE 637



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 182/415 (43%), Gaps = 72/415 (17%)

Query: 27  ALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
           A+F   L++  L  D + V S++ A    + + +   +H  VI+S    D +I + L+ M
Sbjct: 125 AVFLGKLHNSSLLADSI-VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSM 183

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           Y K G  + A+ L DEM ++D VS+++++SG    G++   ++ F  M+           
Sbjct: 184 YFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMR----------- 232

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206
                                SG +PN VT+ S+ S  +    L  GK +HG  VK    
Sbjct: 233 -------------------TESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMS 273

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
               V  ++I+ Y K GFL  A ++F+    RSL+ W +++  +  +G A K + LFN M
Sbjct: 274 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 333

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
              GI PD  T  A+L AC  +GL  +A  I +A   + G    +     ++ + ++  R
Sbjct: 334 KRAGINPDQATMVALLRACTDTGLGRQAESI-HAYIHRCGFNADIIIATALLNLYAKLGR 392

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASI------------------------------- 355
           ++ + +   ++  + +   W A+L G ++                               
Sbjct: 393 LNASEDIFEEIKDRDTI-AWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLS 451

Query: 356 ----SGDVELGKF---VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
               SG VE GK    +   ++ +EP    +Y  M +L  ++GR ++A  + + M
Sbjct: 452 ACSHSGLVEEGKKYFEIMSEVYRVEPR-LDHYSCMVDLLGRSGRLEDAYELIKSM 505


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 239/440 (54%), Gaps = 1/440 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D++S+ S+++ + Q     E  +LF  ++ +   RPDG  VV  L A   + D V G  V
Sbjct: 77  DLISFTSLMSLHLQLDNQREAISLFARVVAAG-HRPDGFAVVGALSASSGAGDQVVGRAV 135

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +    +  ++ + NALI MY++CG  + A  + D MS KDEV++ +++ GY+    V
Sbjct: 136 HGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGV 195

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           + A+  F  +    +  W A+I+G VQ  +    L+L   M   G RP  VTI  + S  
Sbjct: 196 DSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSAC 255

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G+ IHGY  K     NI V+ A++D YAK+G +  A  VF   + +    WT
Sbjct: 256 ADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWT 315

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS     GD  KA+ LF +ML  G+ P+ VTF +VLSAC+HSGL+++  ++F+ M   
Sbjct: 316 TMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQL 375

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I P +EHY CM+ +L R   + EA   ++ M V+P   +W +LL    + G+  L + 
Sbjct: 376 YKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEI 435

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               + + EP + G Y+++ N+Y+ + +W EA  +R+QM    + K PG SWIE  G + 
Sbjct: 436 AGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVH 495

Query: 425 SFVAKDTSGDKSEQIYLILE 444
            F+ +D + D   +IY  LE
Sbjct: 496 EFLVEDKTHDARREIYETLE 515



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 33/260 (12%)

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLD--YARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +FV      M+  +C+ L+    K   L   +A A+   +    +     I   Y   G 
Sbjct: 3   DFVASRGRYMNRSVCHHLLAQCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGR 62

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V  A  LF  +  P L ++ +++S  +Q +     + L   + A+G RP+   +    S 
Sbjct: 63  VADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSA 122

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK------- 236
            S   +   G+ +HG   +   D  + V  A+ID Y++ G    A +VFDR         
Sbjct: 123 SSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTW 182

Query: 237 ------------------------GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
                                    RS++ WTA+I+ +       +A+ LF  M+  G +
Sbjct: 183 GSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHR 242

Query: 273 PDPVTFTAVLSACAHSGLVD 292
           P  VT   VLSACA  G +D
Sbjct: 243 PTHVTIVGVLSACADIGALD 262



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 63/287 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR---------------------------EML 33
           MS +D V+W SM+ GY +    +   + F                            E+ 
Sbjct: 174 MSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELF 233

Query: 34  NSPVL---RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
              VL   RP  VT+V VL AC     +  G  +H +  + +  +++ + NAL+ MYAK 
Sbjct: 234 GRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKS 293

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G ++ A ++  E+  KD  +++ +IS   V G  +KA++LFQ M R              
Sbjct: 294 GHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLR-------------- 339

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNI 209
                            +GV PN+VT  S+ S  SH   ++ G E+     +  + D  +
Sbjct: 340 -----------------AGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLL 382

Query: 210 YVATAIIDTYAKTGFLHGAQRVF-DRFKGRSLIIWTAIISAYAAHGD 255
                +ID   + G L  A+ +  D      ++IW +++SA    G+
Sbjct: 383 EHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGN 429


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 254/446 (56%), Gaps = 1/446 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++ SWN++I G+SQ        +LF +ML    ++P  +T  SV +A  Q     +G ++
Sbjct: 88  NLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQL 147

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+  ++ D +I N +I MYA CG L        E  D D V+++++I G    G V
Sbjct: 148 HGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEV 207

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           +++  LF  M      +WN++ISG V+N R    LDL  +MQ   ++P+  T+ S+ +  
Sbjct: 208 DESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNAS 267

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    LK G+ IH Y  KN ++ N+ V  +IID Y K G +  A +VF+    + L  W 
Sbjct: 268 ARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWN 327

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +I   A +G  ++A+ LF+ +  + ++PD VTF  VL+AC +SGLVDKA + F+ MS  
Sbjct: 328 TMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKT 387

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y I+PS++HY+CMV  L RA  + EA E +  MPV P A +W +LL      G+VEL K 
Sbjct: 388 YKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKR 447

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
              H+ +++  ++  Y++++N+Y+ + +++EA   R  MKE  + K PG S IE +G + 
Sbjct: 448 AAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIH 507

Query: 425 SFVAKDTSGDKSEQIYLILERLLGLM 450
            FVA      +++++Y +L   LG+M
Sbjct: 508 EFVAGGRLHPQAQEVYSLLNE-LGMM 532



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 34/261 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSWNSMI+GY + G   E   LF +M    + +P   T+VS+L A  +   +  
Sbjct: 217 MPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERI-KPSEFTMVSLLNASARLGALKQ 275

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+++ +++ ++++ +  ++I MY KCGS                            
Sbjct: 276 GEWIHDYIRKNNFELNVIVTASIIDMYCKCGS---------------------------- 307

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              + +A  +F++    GLS+WN +I GL  N      + L   ++ S +RP+ VT   +
Sbjct: 308 ---IGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGV 364

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GR 238
            +  ++   +   KE      K  + + +I   + ++DT  + G L  A+ +        
Sbjct: 365 LTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNP 424

Query: 239 SLIIWTAIISAYAAHGDASKA 259
             IIW++++SA   HG+   A
Sbjct: 425 DAIIWSSLLSACRKHGNVELA 445



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 115/268 (42%), Gaps = 34/268 (12%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSI 180
           G +  A  +F  +  P L +WN +I G  Q++  H A+   +  +  S V+P+ +T  S+
Sbjct: 72  GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH-------------- 226
           F  ++       G ++HG  +K     + ++   II  YA  GFL               
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191

Query: 227 -----------------GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
                             ++++FD    R+ + W ++IS Y  +G   +A+ LF +M   
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEE 251

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
            I+P   T  ++L+A A  G + +   I + +  +   + +V   A ++ +  +   I E
Sbjct: 252 RIKPSEFTMVSLLNASARLGALKQGEWIHDYIR-KNNFELNVIVTASIIDMYCKCGSIGE 310

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISG 357
           A +     P+K     W  ++ G +++G
Sbjct: 311 AFQVFEMAPLK-GLSSWNTMILGLAMNG 337



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT--GFLHGAQRVFDRFKGRSL 240
           L  H + +K  ++IH + +K    ++    + ++   A +  G ++ A  VF +    +L
Sbjct: 30  LEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNL 89

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
             W  II  ++       A+SLF +ML  + +QP  +T+ +V  A A  GL      +  
Sbjct: 90  FSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHG 149

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEA-TEFVSKMPVKPSAKVWGALLYGASISGD 358
            +  + G+Q        ++ + +    +SE    F  +M     A  W +++ G +  G+
Sbjct: 150 RVI-KLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVA--WNSMIMGLAKCGE 206

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
           V+  + + D   E+   NT ++  M + Y + GR  EA  +  QM+E
Sbjct: 207 VDESRKLFD---EMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQE 250


>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
          Length = 493

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 251/457 (54%), Gaps = 16/457 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFG-- 61
           D+ SW S IA  ++ G      A    ML+SP    P+ VT+++VL AC  S        
Sbjct: 29  DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 88

Query: 62  --MEVHNFVIE---SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
             + VH  V++   SH    L +   L+  Y        A  L D M  +  V+Y+ +IS
Sbjct: 89  LALSVHARVLKLFPSH----LLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVIS 144

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           G M +G V  A ++F  M  P   +W A+I G V+N RH+  ++  R M   GV P+ VT
Sbjct: 145 GLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVT 204

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + ++ S  +    L  G  +H   V+   +RN+ +A ++ID YA+ G +  A++VF   +
Sbjct: 205 LIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMR 264

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R+++ W ++I  +AA+G  + AV  F  M   G +PD VTFT VL+AC+H GL D+   
Sbjct: 265 KRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLR 324

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            ++ M  +YGI   +EHY C+V +L R+ R+ EA   V+ MP++P+  V GALL G  + 
Sbjct: 325 YYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLAGCRMH 384

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           GDV + + +  HL E++P    NY++++N+Y+  G+WD A +VR  MK  GL K PG S 
Sbjct: 385 GDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSA 444

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           +E  G +  FV+ D S  ++E+I     ++LGL+  E
Sbjct: 445 VEIDGDVHEFVSGDRSHPQAEEI----SQMLGLLMHE 477



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR +VSWNSMI G++  G   +    F E +     +PD VT   VL AC        
Sbjct: 263 MRKRTVVSWNSMIVGFAANGRCADAVEHF-EAMRREGFKPDAVTFTGVLTACSHGGLTDE 321

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+  ++ +   +    +M+ + C  ++ +  + G L+ A  ++  M  + +EV   A+++
Sbjct: 322 GLRYYDLMRAEYGIAARMEHYGC--VVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLA 379

Query: 117 GYMVHGFVEKAMDLFQ 132
           G  +HG V  A  L Q
Sbjct: 380 GCRMHGDVGMAEQLMQ 395


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 272/497 (54%), Gaps = 45/497 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V+WN +I+GY Q G  E+   + + ++    L+ D VT+ +++    ++ +   
Sbjct: 291 MVGKDVVTWNLLISGYVQQGLVEDAIRMCK-LMRLEKLKFDCVTLSTLMSTAARTQNSKL 349

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV  + I    + D+ + +  + MYAKCGS+  A+ + D    KD + ++ +++ Y  
Sbjct: 350 GKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAE 409

Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVI------------------------------ 146
            G   +A+ LF  M+     P + TWN +I                              
Sbjct: 410 SGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVS 469

Query: 147 -----SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                +GLVQN   E  +  +R+MQ  G+RPN  +I+   S  ++ ++L  G+ +HGY +
Sbjct: 470 WTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYII 529

Query: 202 KNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +NR +  ++ + T+++D YAK G +  A++VF R     L ++ A+ISAYA +G+  +A+
Sbjct: 530 RNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAM 589

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
           +L+  + + GI+PD +TFT +LSAC H+G +++A +IF+ M  ++G++P +EHY  MV +
Sbjct: 590 ALYRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDL 649

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           L+ A    +A   + +MP +P A++  +LL   +     EL +++   L E EP+N+GNY
Sbjct: 650 LASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNY 709

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS----GGLQSFVAKDTSGDKS 436
           + ++N Y+  G WDE  ++RE MK  GL K PG SWI         +Q FVA D +  ++
Sbjct: 710 VTISNAYAVEGSWDEVVKMREMMKAKGLKKQPGCSWIRVKREEEEEVQVFVANDKTHLRN 769

Query: 437 EQIYLILERLLGLMREE 453
            +I  +L  LL  MR +
Sbjct: 770 NEIRRMLALLLNDMRSD 786



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 193/404 (47%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    V  P  VTV + L A      +  
Sbjct: 190 IPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGV-EPTRVTVSTCLSASANMGGVEE 248

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   + + +++D  +  +++  Y K G ++YA  + D M  KD V           
Sbjct: 249 GKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVV----------- 297

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    E  + + + M+   ++ + VT+S++
Sbjct: 298 --------------------TWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTL 337

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   N K GKE+  Y +++ ++ +I +A+  +D YAK G +  A++VFD    + L
Sbjct: 338 MSTAARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDL 397

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF EM    + P+ +T+  ++ +   +G VD+A  +F  
Sbjct: 398 ILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQ 457

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+  L +     EA  ++ KM    ++P+       L   +   
Sbjct: 458 MQSS-GIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLA 516

Query: 358 DVELGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            +  G+ V  ++      ++   I   + ++Y++ G   +A++V
Sbjct: 517 SLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKV 560



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 199/429 (46%), Gaps = 52/429 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML   +  PD   V +V +ACG      FG  
Sbjct: 92  RNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIF-PDNFVVPNVCKACGALQWRGFGRG 150

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V +S +   +++ ++L  MY KCG LD AR + DE+ +++ V+++A++ GY+ +G 
Sbjct: 151 VHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGM 210

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A                               + L+ +M+  GV P  VT+S+  S 
Sbjct: 211 NEEA-------------------------------IRLMCDMREEGVEPTRVTVSTCLSA 239

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  AV N  + +  + T++++ Y K G +  A+ VFDR  G+ ++ W
Sbjct: 240 SANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTW 299

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
             +IS Y   G    A+ +   M    ++ D VT + ++S  A +     G   + + I 
Sbjct: 300 NLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIR 359

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           ++      +  +        G +  A+++ ++T       V+    +W  LL   + SG 
Sbjct: 360 HSFESDIVLASTAVDMYAKCGSIVDAKKVFDST-------VQKDLILWNTLLAAYAESGL 412

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG-R 414
             E  +   +   E  P N  T N II++ L  + G+ DEA ++  QM+ SG+  +P   
Sbjct: 413 SGEALRLFYEMQLESVPPNVITWNLIILSLL--RNGQVDEAKKMFLQMQSSGI--VPTIV 468

Query: 415 SWIECSGGL 423
           SW     GL
Sbjct: 469 SWTTMMNGL 477



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 150/352 (42%), Gaps = 47/352 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D   G ++H  ++++      + +I   L+  YAKC +L+ A  L  ++  
Sbjct: 32  ILQGCVYERDFHTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKLRV 91

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII      G VE A+                   G V             EM
Sbjct: 92  RNVFSWAAIIGVKCRMGLVEGAL------------------MGFV-------------EM 120

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
               + P+   + ++            G+ +HGY  K+  D  ++VA+++ D Y K G L
Sbjct: 121 LKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVL 180

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    R+++ W A++  Y  +G   +A+ L  +M   G++P  VT +  LSA 
Sbjct: 181 DDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSAS 240

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G V++     A  + N +     +  SV ++ C VG++       E  E V    V 
Sbjct: 241 ANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLV-------EYAEMVFDRMVG 293

Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
                W  L+ G    G VE    +C  L  +E     + + ++ L S A R
Sbjct: 294 KDVVTWNLLISGYVQQGLVEDAIRMC-KLMRLEKLKF-DCVTLSTLMSTAAR 343



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 38/246 (15%)

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR--YD 206
           L +N   +  L LV EM    VR        I     +  +   G++IH   +KN   Y 
Sbjct: 1   LCKNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYA 60

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           +N Y+ T ++  YAK   L  A+ +F + + R++  W AII      G    A+  F EM
Sbjct: 61  KNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEM 120

Query: 267 LNNGIQPDPVTFTAVLSAC----------------AHSGLVDKAWDIFNAMSGQYGIQPS 310
           L + I PD      V  AC                A SGL D  + + ++++  YG    
Sbjct: 121 LKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVF-VASSLADMYG---- 175

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELGKFVCDHL 369
                   GVL  AR++ +      ++P + +   W AL+ G   +G + E  + +CD  
Sbjct: 176 ------KCGVLDDARKVFD------EIPER-NVVAWNALMVGYVQNGMNEEAIRLMCDMR 222

Query: 370 FE-IEP 374
            E +EP
Sbjct: 223 EEGVEP 228


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 267/491 (54%), Gaps = 25/491 (5%)

Query: 1   MSKRDIVSWNSMI---AGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD 57
           M + +   WN+++   A  +      E   LF  ML    ++P+  T  SVL+AC ++S 
Sbjct: 78  MPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL---------------LDE 102
           +  G ++H  +++     D ++ + L+ MY  C  ++ A +L               LD+
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197

Query: 103 M-SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
              D + V ++ +I G +  G ++ A +LF  M    + +WN +ISG  QN      ++L
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINL 257

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
            +EMQ+S + PN VT+ S+    +    L+ GK IH YA KN+ + +  + +A++D Y+K
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSK 317

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G +  A +VF+    R+ I W+AII A+A HG A  A+  F+ M   G+ P+ V +  +
Sbjct: 318 CGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGI 377

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           LSAC+H+GLV++    F+ M    G+QP +EHY CMV +L RA  + EA E +  MP++P
Sbjct: 378 LSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEP 437

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
              +W ALL    +  ++++G+ V + L E+ P ++G+Y+ ++NLY+  G W+   RVR 
Sbjct: 438 DDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRL 497

Query: 402 QMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------ 455
           +MK   + K PG SWIE  G +  F+ +D S  K+++I  +L  +   +R  GY      
Sbjct: 498 KMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLE 557

Query: 456 VLLDEVEEESA 466
           V L+  E+E A
Sbjct: 558 VFLNTDEQERA 568


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 244/469 (52%), Gaps = 43/469 (9%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREM--LNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            D+ SWN+++ GY +     +    F  M  +  P+   D +T+ + ++A G   ++  G 
Sbjct: 1063 DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI---DEITLATAIKASGCLINLKQGK 1119

Query: 63   EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            ++  + I+     DLW+ + ++ MY KCG +                             
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDM----------------------------- 1150

Query: 123  FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                A++LF  + RP    W  +ISG ++N   +  L +   M+ SGV+P+  T +++  
Sbjct: 1151 --PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 183  LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
              S  + L+ GK+IH   VK  Y  + +V T+++D Y K G +  A RVF +   R ++ 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268

Query: 243  WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
            W A++   A HG   +A++LF  M +NGIQPD VTF  VLSAC+HSGL  +A+  F+AM 
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328

Query: 303  GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
              YGI P +EHY+C+V  L RA RI EA   ++ MP K SA ++ ALL      GD E  
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388

Query: 363  KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
            K V D L  ++P ++  Y++++N+Y+ + +WD+    R  MK   + K PG SWI+    
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448

Query: 423  LQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEE 464
            +  FV  D S  ++  IY  +E L+  +REEG       + LLD  EEE
Sbjct: 1449 VHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEE 1497



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 192/407 (47%), Gaps = 46/407 (11%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---IVFG 61
            D++SWN+MI+ Y+Q     E    FR++L    L+PD  T+ SVL+AC    +      G
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYFTLG 1017

Query: 62   MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             +VH + I+  I  D ++  ALI +Y+K G +D A  LL    D D              
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFD-------------- 1063

Query: 122  GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
                             L++WNA++ G +++N+    L+    M   G+  + +T+++  
Sbjct: 1064 -----------------LASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAI 1106

Query: 182  SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                   NLK GK+I  YA+K  ++ +++V++ ++D Y K G +  A  +F        +
Sbjct: 1107 KASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEV 1166

Query: 242  IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF-NA 300
             WT +IS Y  +GD   A+S+++ M  +G+QPD  TF  ++ A +    +++   I  N 
Sbjct: 1167 AWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV 1226

Query: 301  MSGQYGIQPSVEHY--ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +   Y    S++H+    +V +  +   + +A     KM V+     W A+L G +  G 
Sbjct: 1227 VKLDY----SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGH 1281

Query: 359  VE--LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
            V+  L  F       I+P+    +I + +  S +G + EA +  + M
Sbjct: 1282 VDEALNLFRTMQSNGIQPDKV-TFIGVLSACSHSGLFSEAYKYFDAM 1327



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 55/337 (16%)

Query: 2    SKRDIVSWNSMIAGYSQ--GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
            S RD+V+WNS++A Y+Q     YE     FR      +LR  G ++  +  A      ++
Sbjct: 673  SDRDLVTWNSILAAYAQFADSSYENVLEGFRLF---GLLREFGFSITRLTLAPLLKLCLL 729

Query: 60   FGM-----EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
             G       VH + ++   ++DL++  AL+ +Y K G +  AR L D+M ++D V ++ +
Sbjct: 730  SGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVM 789

Query: 115  ISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAVISGL---VQNNRHE----------- 156
            +  Y+ + F ++A+  F    R    P  S  + VI G+   V NNR             
Sbjct: 790  LKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMK 849

Query: 157  ---------------------------AVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
                                       A +D  + +  S +  ++VT+  I S      +
Sbjct: 850  MFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 190  LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
            L  G++IH   +K+ +   + V+ ++++ Y+K G ++ A++ F       LI W  +IS+
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 250  YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            YA +    +A+  F ++L +G++PD  T  +VL AC+
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 26/219 (11%)

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
           +D+  G   H  ++ S    D ++ N LI MY+KCGSL  AR + D+ SD+D V++++I+
Sbjct: 625 ADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           + Y    F +              S++  V+ G         +  L+RE   S  R   +
Sbjct: 685 AAYA--QFAD--------------SSYENVLEGF-------RLFGLLREFGFSITR---L 718

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T++ +  L      ++  + +HGYAVK  ++ +++V+ A+++ Y K G +  A+ +FD+ 
Sbjct: 719 TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKM 778

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
             R  ++W  ++ AY  +    +A+  F+    +G  PD
Sbjct: 779 PERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 38/271 (14%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            +S+ D V+W +MI+GY + G  +   +++  M  S V +PD  T  ++++A    + +  
Sbjct: 1160 ISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV-QPDEYTFATLIKASSCLTALEQ 1218

Query: 61   GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            G ++H  V++    +D ++  +L+ MY KCGS+  A  +  +M  +  V ++A++ G   
Sbjct: 1219 GKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQ 1278

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            HG V++A++LF                               R MQ++G++P+ VT   +
Sbjct: 1279 HGHVDEALNLF-------------------------------RTMQSNGIQPDKVTFIGV 1307

Query: 181  FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDR--FK 236
             S  SH S L      +  A+   Y     I   + ++D   + G +  A+ V     FK
Sbjct: 1308 LSACSH-SGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFK 1366

Query: 237  GRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
              S  ++ A++ A    GDA  A  + +++L
Sbjct: 1367 A-SASMYRALLGACRTKGDAETAKRVADKLL 1396



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 53/334 (15%)

Query: 1    MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
            M +RD V WN M+  Y +  F +E    F     S    PD   +  V+   G +SD+  
Sbjct: 778  MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFF-PDFSNLHCVIG--GVNSDVSN 834

Query: 61   GMEVHNFVIESH-IKM-------DLWICNALIGMYAKCG----SLDYARALLDEMSDKDE 108
              + H   ++++ +KM       +++  N  +  +   G    ++D  + LL      D 
Sbjct: 835  NRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDS 894

Query: 109  VSYSAIIS----------GYMVHGFVEKA------------MDLFQ-----------VMK 135
            V+   I+S          G  +H  V K+            M+++             + 
Sbjct: 895  VTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 136  RPGLS--TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN---L 190
             P L   +WN +IS   QNN     +   R++   G++P+  T++S+    S        
Sbjct: 955  SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYF 1014

Query: 191  KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
              G ++H YA+K     + +V+TA+ID Y+K G +  A+ +        L  W AI+  Y
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 251  AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
                 + KA+  F+ M   GI  D +T    + A
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 38/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +++VSW  MI G  + G + E   LFR +L S  LRPDG  +V VL+AC +  D+  
Sbjct: 165 MVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESG-LRPDGFVIVRVLRACARLGDLES 223

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +   + E  +  ++++  +L+ MY KCGS++ AR + D M +KD V           
Sbjct: 224 GRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIV----------- 272

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+A+I G   N      ++L  EM+   VRP+   +   
Sbjct: 273 --------------------CWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L+ G    G      +  N  + T++ID YAK G +  A  V+   K +  
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           +++ A+IS  A +G    A  +F +M   GI P+  TF  +L  C H+GLVD     FN+
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS  + + P++EHY CMV +L+RA  + EA   +  MP+K +  VWG+LL G  +  + +
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   L E+EP N+G+Y++++N+YS + RWDEA+++R  + E G+ K+PG SW+E  
Sbjct: 493 LAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEESAY 467
           G +  F+  DTS   S++IY  LE L   ++E GY      VL D  EEE  +
Sbjct: 553 GVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEH 605



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 183/431 (42%), Gaps = 69/431 (16%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           +N+MI G      +     L+  M  + ++ PD  T   VL+AC + +    G+ +H+ V
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIV-PDSFTFSFVLKACARLNLFHLGVMIHSLV 130

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
            ++    D+++   ++  Y+KCG L  A  + D+M  K+ VS                  
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVS------------------ 172

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
                        W  +I G ++  +    +DL R +  SG+RP+   I  +    +   
Sbjct: 173 -------------WTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLG 219

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
           +L+ G+ I     +    RN++VAT+++D Y K G +  A+ VFD    + ++ W+A+I 
Sbjct: 220 DLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQ 279

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----------SGLVDKAWDIF 298
            YA++G   +A+ LF EM    ++PD       LS+CA            GL++    + 
Sbjct: 280 GYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLS 339

Query: 299 NAMSGQ-----YGIQPSVEHYACMVGVLSRARRI-------------SEATEF-----VS 335
           N + G      Y    S+E    +  ++    R+                  F     + 
Sbjct: 340 NPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMG 399

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCD---HLFEIEPENTGNYIIMANLYSQAGR 392
           K  + P+   +  LL G + +G V+ G+   +   H F + P    +Y  M +L ++AG 
Sbjct: 400 KFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTP-TIEHYGCMVDLLARAGF 458

Query: 393 WDEADRVREQM 403
            DEA  + + M
Sbjct: 459 LDEAHNLIKGM 469


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 261/458 (56%), Gaps = 6/458 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ +SW++MIA YSQ G+ EE   LF +M+     +P+       L A      +  
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEG-FKPNISCFACTLSALASLRALSA 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H  V +  I  D++I ++LI +Y KCG  D  R + D + +K+ V +++++ GY +
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +E+  +LF+++      +W  +J+G ++N + E VL++   +  SG  PN  T SS+
Sbjct: 395 NGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G  +HG  +K     +I+V TA+ D YAK G +  +++VF+R   ++ 
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNE 514

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I WT +I   A  G A +++ LF EM     + P+ +   +VL AC+H GLVDK    FN
Sbjct: 515 ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFN 574

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   YGI+P  +HY C+V +LSR+ R+ EA EF+  +P +P A  W ALL G     D 
Sbjct: 575 SMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDE 634

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ++ +     L+++   N+  Y++++N+Y+ AGRW +   +R+ M+E GL K  G SW+E 
Sbjct: 635 KIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEV 694

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL 457
              + SF ++D S  +S++IY  L+    L+R E  VL
Sbjct: 695 RNQVHSFYSEDGSHSQSDEIYGTLQ----LLRSEMLVL 728



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 183/385 (47%), Gaps = 34/385 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSW + I+G+ + G   E   LF  +L S V RP+ VT  SV++ACG+  D   GM 
Sbjct: 147 QNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV-RPNDVTFTSVVRACGELGDFGLGMS 205

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +   V+++  +  L + N+LI +  + G +D AR + D M  +D VS++AI+  Y+  G 
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F  M      +W+A+I+   Q+   E  L L  +M   G +PN    +   S 
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  G  IHG+  K   D+++++ +++ID Y K G     + VFD    ++++ W
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 244 TAIISAYAAHG-------------------------------DASKAVSLFNEMLNNGIQ 272
            +++  Y+ +G                                  K + +FN +L +G  
Sbjct: 386 NSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+  TF++VL ACA    +DK  ++   +  + GIQ  +     +  + ++   I  + +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKII-KLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 333 FVSKMPVKPSAKVWGALLYGASISG 357
              +MP K     W  ++ G + SG
Sbjct: 505 VFERMPEKNEIS-WTVMIQGLAESG 528



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 11/320 (3%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           DL + N +I  Y + G+L  AR L DEM +++EVS+SA+ISG M +G VE++M  F+   
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
              + +W A ISG V+N  +   L L   +  SGVRPN VT +S+        +   G  
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           I G  VK  ++  + V+ ++I    + G +  A+RVFDR + R ++ WTAI+ AY   GD
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             +A  +F+EM     + + ++++A+++  + SG  ++A  +F+ M  Q G +P++  +A
Sbjct: 266 LREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMV-QEGFKPNISCFA 320

Query: 316 CMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
           C +  L+  R +S        V+K+ +     +  +L+      G  + G+ V D + E 
Sbjct: 321 CTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILE- 379

Query: 373 EPENTGNYIIMANLYSQAGR 392
             +N   +  M   YS  GR
Sbjct: 380 --KNVVCWNSMVGGYSINGR 397



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           +RN    +A+I    K G +  +   F+R   ++++ WTA IS +  +G   +A+ LF  
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY----------A 315
           +L +G++P+ VTFT+V+ AC   G       I   +     ++   EHY          +
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLV-----VKAGFEHYLSVSNSLITLS 229

Query: 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375
             +G +  ARR+ +  E       K     W A+L     +GD+   + + D   E+   
Sbjct: 230 LRMGEIDLARRVFDRME-------KRDVVSWTAILDAYVETGDLREARRIFD---EMPER 279

Query: 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           N  ++  M   YSQ+G  +EA ++  +M + G    P  S   C+
Sbjct: 280 NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK--PNISCFACT 322


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 245/456 (53%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+VSW ++I G+   G+    + +F +ML +    P+  T +S+L++C   SD+  
Sbjct: 252 IPERDVVSWTALITGFVAEGYGSGLR-IFNQML-AEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  ++++ +  + ++  AL+ MYAK                               
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAK------------------------------- 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           + F+E A  +F  + +  L  W  +++G  Q+ + E  +    +MQ  GV+PN  T++S 
Sbjct: 339 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 398

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S  + L  G+++H  A+K     +++VA+A++D YAK G +  A+ VFD    R  
Sbjct: 399 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 458

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II  Y+ HG   KA+  F  ML+ G  PD VTF  VLSAC+H GL+++    FN+
Sbjct: 459 VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS 518

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +S  YGI P++EHYACMV +L RA +  E   F+ +M +  +  +W  +L    + G++E
Sbjct: 519 LSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 578

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            G+     LFE+EPE   NYI+++N+++  G WD+   VR  M   G+ K PG SW+E +
Sbjct: 579 FGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVN 638

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G +  F++ D S  K  +I+L L+ L   +   GY 
Sbjct: 639 GQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYT 674



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 37/294 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--LRPDGVTVVSVLQACGQSSDI 58
           M   ++ S N++++G+      E C    R ++   V    P+  T +S+L+ C    D+
Sbjct: 151 MMIENLASRNNLLSGFCDT---ETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDL 207

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G  +H  VI+S I  D  + N+L+ +YAKCGS +YA  +  E+ ++D VS++A+I+G+
Sbjct: 208 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 267

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G+              GL  +N                    +M A G  PN  T  
Sbjct: 268 VAEGY------------GSGLRIFN--------------------QMLAEGFNPNMYTFI 295

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    S  S++  GK++H   VKN  D N +V TA++D YAK  FL  A+ +F+R   R
Sbjct: 296 SILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 355

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
            L  WT I++ YA  G   KAV  F +M   G++P+  T  + LS C+    +D
Sbjct: 356 DLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLD 409



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 45/365 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+  WN  ++  +     +E   LF  M ++ + R +     S++ A     D  +
Sbjct: 50  MPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI-RLNQFIFASLISAAASLGDNHY 108

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +   + D+ I NA + MY K  S                            
Sbjct: 109 GESIHACVCKYGFESDILISNAFVTMYMKTQS---------------------------- 140

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE     F+ M    L++ N ++SG       +    ++ ++   G  PN  T  SI
Sbjct: 141 ---VENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISI 197

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L  GK IHG  +K+  + + ++  ++++ YAK G  + A +VF     R +
Sbjct: 198 LKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 257

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAW 295
           + WTA+I+ + A G  S  + +FN+ML  G  P+  TF ++L +C+    VD      A 
Sbjct: 258 VSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 316

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            + N++ G   +  +      +V + ++ R + +A    +++ +K     W  ++ G + 
Sbjct: 317 IVKNSLDGNDFVGTA------LVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQ 369

Query: 356 SGDVE 360
            G  E
Sbjct: 370 DGQGE 374



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 39/288 (13%)

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           VI++ I  D  + ++L+ +Y KC SL  AR +L+EM  +D   ++  +S       +++A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
           + LF +M                   RH            + +R N    +S+ S  +  
Sbjct: 75  VQLFYLM-------------------RH------------TRIRLNQFIFASLISAAASL 103

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
            +   G+ IH    K  ++ +I ++ A +  Y KT  +    + F      +L     ++
Sbjct: 104 GDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLL 163

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-- 305
           S +       +   +  ++L  G +P+  TF ++L  CA  G +++      A+ GQ   
Sbjct: 164 SGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEG----KAIHGQVIK 219

Query: 306 -GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            GI P    +  +V V ++    + A +   ++P +     W AL+ G
Sbjct: 220 SGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVS-WTALITG 266


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 250/455 (54%), Gaps = 1/455 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RDI  ++S++   S     E    + R ML++  L PD   + SV     +      G 
Sbjct: 66  RRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGR 125

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H   + S    D  + ++L+ MY KCGS D  R + D MS K+ V ++A++SGY  +G
Sbjct: 126 QLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNG 185

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
             E+A+ LF+ M    L  W A+ISGLV        ++L  EM+  GVR  +A  +S + 
Sbjct: 186 RSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVI 245

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +  +    G+++HG  ++  +  N+ V  A+ID Y+K   +  A+ VF+    R +I
Sbjct: 246 GGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVI 305

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT ++   A HG A +A++L++ M+  G +P+ VTF  ++ AC+H+GLV K   +F +M
Sbjct: 306 SWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESM 365

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI P ++HY C + +LSR+  + EA E ++ MP +P    WGALL   +   D E+
Sbjct: 366 KNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEM 425

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
              + D L E+ P+++  YI+++N+Y+  G+WD   +VR+ M    + K PG SWIE   
Sbjct: 426 CIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGR 485

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + F A +   D  E+I + LE ++  MR+ GYV
Sbjct: 486 EFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYV 520



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 34/220 (15%)

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           AL+  YAK   L  A  L DE   +D   YS++++        E A+ + + M       
Sbjct: 43  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCM------- 95

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                                  + A  + P+   ISS+ S+F+   + + G+++H + V
Sbjct: 96  -----------------------LSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFV 132

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            + Y+ +  V ++++D Y K G     ++VFD    ++ ++WTA++S YA++G + +A+ 
Sbjct: 133 VSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQ 192

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           LF  M    +      +TA++S   ++G    A ++F  M
Sbjct: 193 LFRSMPGRNL----FAWTALISGLVNTGESVGAVELFVEM 228



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 142/340 (41%), Gaps = 73/340 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           MS ++ V W ++++GY+  G  EE   LFR M    +                       
Sbjct: 166 MSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELF 225

Query: 38  --LRPDGVT-----VVSVLQACGQSSDI---VFGMEVHNFVIESHIKMDLWICNALIGMY 87
             +R DGV      V+S++   G S+D+   V G ++H   +      ++ + NALI MY
Sbjct: 226 VEMRRDGVRIDDAFVLSIV--IGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 283

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           +KC  +  AR + + ++ +D +S++ ++ G   HG  E+A+ L+                
Sbjct: 284 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD--------------- 328

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-- 205
                            M  +G +PN VT   +    SH   ++ G+++   ++KN Y  
Sbjct: 329 ----------------RMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFE-SMKNEYGI 371

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGDASKAVSLFN 264
              +   T  +D  +++G L  A+ +            W A++SA   + DA   + + +
Sbjct: 372 TPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISD 431

Query: 265 EMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++L   ++P D  T+  + +  A +G  D    +   M G
Sbjct: 432 KLLE--LRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIG 469



 Score = 38.5 bits (88), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 13/153 (8%)

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQ 272
           A++  YAK+  L  A  +FD    R + I++++++A +       A+ +   ML+ + + 
Sbjct: 43  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102

Query: 273 PDPVTFTAVLSACA-----HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
           PD    ++V S  A       G    A  + +  +G   ++ S+    C  G     R++
Sbjct: 103 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 162

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            ++      M  K S  VW AL+ G + +G  E
Sbjct: 163 FDS------MSAKNSV-VWTALVSGYASNGRSE 188


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/473 (31%), Positives = 251/473 (53%), Gaps = 38/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++IA + Q     +  +LF  ML S  + PD  T  SV++AC     + +
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRS-TMEPDDFTYGSVVKACAGQQALNY 459

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           GME+H  +++S + +D ++ +AL+ MY KCG L  A  + D + +K  VS          
Sbjct: 460 GMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVS---------- 509

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISG     + E       +M   GV P+  T +++
Sbjct: 510 ---------------------WNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATV 548

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + ++ + ++ GK+IH   +K     ++Y+A+ ++D Y+K G +  ++ +F++   R  
Sbjct: 549 LDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDY 608

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I AYA HG   +A+ LF EM    ++P+   F +VL ACAH G VDK    F  
Sbjct: 609 VTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQI 668

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY+CMV +L R+ +++EA + +  M  +    +W  LL    + G+VE
Sbjct: 669 MQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVE 728

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   + L +++P+++  Y+++AN+Y+  G W E  ++R  MK   L K PG SWIE  
Sbjct: 729 VAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVR 788

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEESAY 467
             + +F+  D +  +SE+IY     L+  M+  GYV      L +EVEE+  Y
Sbjct: 789 DEVHTFLVGDKAHPRSEEIYEQTHLLVDEMKWAGYVPDIDSMLDEEVEEQDPY 841



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 189/452 (41%), Gaps = 81/452 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV---TVVSVLQACGQSSD 57
           M +R++V W+++IAGY Q   + E   LF++ML   +    GV   T  SV ++C   S 
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGM----GVSQSTYASVFRSCAGLSA 254

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD----------------------- 94
              G ++H   ++S    D  I  A + MYAKC  +                        
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 95  YAR------AL------------LDEMSDKDEVSYSAIISGYM----VHGFVEK------ 126
           YAR      AL             DE+S    ++  ++I G++    +HG   K      
Sbjct: 315 YARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFN 374

Query: 127 -------------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                              A  +F  M+R    +WNA+I+   QN      L L   M  
Sbjct: 375 ICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR 434

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           S + P+  T  S+    +    L  G EIHG  VK+    + +V +A++D Y K G L  
Sbjct: 435 STMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLME 494

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+++ DR + ++ + W +IIS +++   +  A   F++ML  G+ PD  T+  VL  CA+
Sbjct: 495 AEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCAN 554

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
              ++    I +A   +  +   V   + +V + S+   + ++     K P K     W 
Sbjct: 555 MATIELGKQI-HAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTWS 612

Query: 348 ALL--YGASISGDVELGKFVCDHLFEIEPENT 377
           A++  Y     G+  +  F    L  ++P +T
Sbjct: 613 AMICAYAYHGHGEQAIKLFEEMQLLNVKPNHT 644



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNS+++ Y   G   +   +F  M  S  +  D  T   VL+AC    D   
Sbjct: 98  MPERDVVSWNSLLSCYLHNGVNRKSIEIFVRM-RSLKIPHDYATFSVVLKACSGIEDYGL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   I+   + D+   +AL+ MY+KC  LD A  +  EM +++             
Sbjct: 157 GLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERN------------- 203

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L  W+AVI+G VQN+R    L L ++M   G+  +  T +S+
Sbjct: 204 ------------------LVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S  K G ++HG+A+K+ +  +  + TA +D YAK   +  A +VF+       
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             + AII  YA      KA+ +F  +    +  D ++ +  L+AC+
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACS 351



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 154/314 (49%), Gaps = 12/314 (3%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T   +LQ C     +  G + H  +I +     +++ N L+  Y K  +++YA  + D M
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
             +D +S++ +I GY   G +  A  LF  M    + +WN+++S  + N  +   +++  
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            M++  +  +  T S +    S   +   G ++H  A++  ++ ++   +A++D Y+K  
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L GA R+F     R+L+ W+A+I+ Y  +    + + LF +ML  G+     T+ +V  
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG-----VLSRARRISEATEFVSKMP 338
           +CA  GL   A+ +   + G + ++     Y  ++G     + ++  R+S+A +  + +P
Sbjct: 248 SCA--GL--SAFKLGTQLHG-HALKSDFA-YDSIIGTATLDMYAKCDRMSDAWKVFNTLP 301

Query: 339 VKPSAKVWGALLYG 352
             P  + + A++ G
Sbjct: 302 -NPPRQSYNAIIVG 314


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 244/451 (54%), Gaps = 30/451 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+++++SW ++I+GYS+ G+ ++    F  + +   +  D   + ++L  C   +++  
Sbjct: 330 MSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLEL 389

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H FV++     D+ +  AL+ +YAKC  L  AR + D +S+K   S++AI++    
Sbjct: 390 GLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILA---- 445

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            GF+E + D                          E  + L  +++ +GV+P+ VT S +
Sbjct: 446 -GFLESSGD-------------------------EEDPMILFNQLRLAGVKPDMVTFSRL 479

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            SL ++ ++L+ G+  H Y VK  +D NI VA ++I  YAK G +  A ++F+    R  
Sbjct: 480 LSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDS 539

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+ISAYA HG A K++ LF EM   G  PD  T  A+L AC +SGL      +FN 
Sbjct: 540 ISWNALISAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNL 599

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +YGI+P +EHYACM  +L RA  +SEA + + + P   S  +W  L+    + G++ 
Sbjct: 600 MEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLN 659

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
            GK    HL ++ P   G+YI+++N+Y+     DEA +VR+ M +    K  G SWIE  
Sbjct: 660 FGKLASKHLLDLSPVEAGSYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEID 719

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
             +  FVA D    +S +IY  LE L   M+
Sbjct: 720 NKVHHFVASDKDHPESREIYTRLELLTDEMK 750



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 33/303 (10%)

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           S D + G  VH++++++  + D +  N ++ +Y K   LD A+ + D M  ++ +     
Sbjct: 80  SRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTI----- 134

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
                                     TW ++I G +++N  ++   +  +M   G   N 
Sbjct: 135 --------------------------TWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNE 168

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T + I    S   +   G++IH + +K+ +D N++V T++I  Y K+GF   A++VFD 
Sbjct: 169 HTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDS 228

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              + +     +I  Y   G+  KA+ +F  +LN+G +P   TFT ++S C     V++ 
Sbjct: 229 MGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEG 288

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +   ++ +YG          ++ +   +    EA    S M  K +   W AL+ G S
Sbjct: 289 KQL-QGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEK-NLISWTALISGYS 346

Query: 355 ISG 357
            SG
Sbjct: 347 RSG 349



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 45/293 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL------FREMLNSPVLRPDGVTVVSVLQACGQ 54
           M  R+ ++W S+I GY +   ++   ++      F E  N         T   +LQAC  
Sbjct: 128 MRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEH-------TCTVILQACSS 180

Query: 55  SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
             D + G ++H FVI+S    ++++  +LI MY K G  D A  + D M  KD    + +
Sbjct: 181 PDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFM 240

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I  Y   G   KA+++F                               + +   G  P  
Sbjct: 241 ILEYGRAGNGGKAIEVF-------------------------------KNLLNDGFEPTD 269

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T ++I S  +    ++ GK++ G A K  +     V  AII  Y  +G    A+R+F  
Sbjct: 270 YTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSS 329

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACA 286
              ++LI WTA+IS Y+  G   KAV  F  + +  GI  D    TA+L  C+
Sbjct: 330 MSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCS 382


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 248/456 (54%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+V+W ++IAG+SQ     +   LF +ML    L+P+  T+ S+L+A G    +  
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-LQPNHFTLSSLLKASGSEHGLDP 207

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F ++   +  +++ +AL+ MYA+CG +D A+   D M  K EVS          
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS---------- 257

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  +    E  L L+ +MQ    +P   T SS+
Sbjct: 258 ---------------------WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSV 296

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS  +    L+ GK +H + +K+      ++   ++D YAK G +  A+RVFDR     +
Sbjct: 297 FSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDV 356

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +++  A HG   + +  F +ML  GI+P+ ++F  VL+AC+HSGL+D+    F  
Sbjct: 357 VSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFEL 416

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y ++P V HY   V +L R   +  A  F+ +MP++P+A VWGALL    +  ++E
Sbjct: 417 MK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNME 475

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG +  +  FE++P ++G  ++++N+Y+ AGRW +  +VR+ MKESG+ K P  SW+E  
Sbjct: 476 LGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIE 535

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  FVA D +  + ++I    E + G ++E GYV
Sbjct: 536 NAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYV 571



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 176/382 (46%), Gaps = 45/382 (11%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESH-IKMDLWICNALIGMYAK 89
           +++    L PD      +L+ C +   +  G  VH  +++SH +   L + N ++ MYAK
Sbjct: 76  DLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAK 135

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGL 149
           CG LD AR + DEM  KD V                               TW A+I+G 
Sbjct: 136 CGCLDDARRMFDEMPTKDMV-------------------------------TWTALIAGF 164

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
            QNNR    L L  +M   G++PN  T+SS+         L  G ++H + +K  Y  ++
Sbjct: 165 SQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSV 224

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
           YV +A++D YA+ G +  AQ  FD    +S + W A+IS +A  G+   A+ L  +M   
Sbjct: 225 YVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRK 284

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
             QP   T+++V SACA  G +++  W   +A   + G++        ++ + ++A  I 
Sbjct: 285 NFQPTHFTYSSVFSACASIGALEQGKW--VHAHMIKSGLKLIAFIGNTLLDMYAKAGSID 342

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE-----IEPENTGNYIIM 383
           +A     ++ VKP    W  +L G +  G   LGK   D   +     IEP N  +++ +
Sbjct: 343 DAKRVFDRL-VKPDVVSWNTMLTGCAQHG---LGKETLDRFEQMLRIGIEP-NEISFLCV 397

Query: 384 ANLYSQAGRWDEADRVREQMKE 405
               S +G  DE     E MK+
Sbjct: 398 LTACSHSGLLDEGLYYFELMKK 419


>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 251/457 (54%), Gaps = 16/457 (3%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFG-- 61
           D+ SW S IA  ++ G      A    ML+SP    P+ VT+++VL AC  S        
Sbjct: 63  DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122

Query: 62  --MEVHNFVIE---SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
             + VH  V++   SH    L +   L+  Y        A  L D M  +  V+Y+ +IS
Sbjct: 123 LALSVHARVLKLFPSH----LLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVIS 178

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           G M +G V  A ++F  M  P   +W A+I G V+N RH+  +D  R M   GV P+ VT
Sbjct: 179 GLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVT 238

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + ++ S  +    L  G  +H   V+   +RN+ +A ++ID YA+ G +  A++VF   +
Sbjct: 239 LIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMR 298

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R+++ W ++I  +AA+G  + AV  F  M   G +PD VTFT VL+AC+H GL D+   
Sbjct: 299 KRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLR 358

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            ++ M  +YGI   +EHY C+V +L R+ ++ EA   V+ MP++P+  V GALL G  + 
Sbjct: 359 YYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMH 418

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           GDV + + +  HL E++P    NY++++N+Y+  G+WD A +VR  MK  GL K PG S 
Sbjct: 419 GDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSA 478

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           +E  G +  FV+ D S  ++E+I     ++LGL+  E
Sbjct: 479 VEIDGDVHEFVSGDRSHPQAEEI----SQMLGLLMHE 511



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR +VSWNSMI G++  G   +    F E +     +PD VT   VL AC        
Sbjct: 297 MRKRTVVSWNSMIVGFAANGRCADAVEHF-EAMRREGFKPDAVTFTGVLTACSHGGLTDE 355

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+  ++ +   +    +M+ + C  ++ +  + G L+ A  ++  M  + +EV   A+++
Sbjct: 356 GLRYYDLMRAEYGIAARMEHYGC--VVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLA 413

Query: 117 GYMVHGFVEKAMDLFQ 132
           G  +HG V  A  L Q
Sbjct: 414 GCRMHGDVGMAEQLMQ 429


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/473 (30%), Positives = 257/473 (54%), Gaps = 40/473 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN++I GY++ G      +L+REM  S  + PD  T   +L+A G+ +D+  G  +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ VI S     +++ N+L+ +YA CG +  A  + D+M +KD                 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----------------- 186

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                         L  WN+VI+G  +N + E  L L  EM   G++P+  TI S+ S  
Sbjct: 187 --------------LVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSAC 232

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  GK  H Y +K    RN++ +  ++D YA+ G +  A+ +FD    ++ + WT
Sbjct: 233 AKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 245 AIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++I   A +G   +A+ LF  M +  G+ P  +TF  +L AC+H G+V + ++ F  MS 
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSE 352

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +Y I+P +EH+ CMV +L+RA ++ +A E++ KMP++P+  +W  LL   ++ GD +L +
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                + ++EP ++G+Y++++N+Y+   RW +  ++R+QM   G+ K+PG S +E    +
Sbjct: 413 LARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRV 472

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESAYV 468
             F+  D S  +++ IY  L+ +   +R EGYV         ++E E+E+A V
Sbjct: 473 HEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALV 525



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 33/261 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+WNS+I G+++ G  EE  AL+ EM +   ++PDG T+VS+L AC +   +  
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-DLKGIKPDGFTIVSLLSACAKIGALTL 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H ++I+  +  +L   N L+ +YA+CG ++ A+ L DEM DK+ VS++++I G  V
Sbjct: 241 GKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++A++LF+ M+                                 G+ P  +T   I
Sbjct: 301 NGLGKEAIELFKNME------------------------------SKEGLLPCEITFVGI 330

Query: 181 FSLFSHFSNLKGGKE-IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA-QRVFDRFKGR 238
               SH   +K G E     + + + +  I     ++D  A+ G +  A + +       
Sbjct: 331 LYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQP 390

Query: 239 SLIIWTAIISAYAAHGDASKA 259
           +++IW  ++ A   HGD+  A
Sbjct: 391 NVVIWRTLLGACTVHGDSDLA 411



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 9/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  ++ VSW S+I G +  G  +E   LF+ M +   L P  +T V +L AC     +  
Sbjct: 283 MVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKE 342

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G E    + E + I+  +     ++ + A+ G +  A   + +M    + V +  ++   
Sbjct: 343 GFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGAC 402

Query: 119 MVHGFVEKA----MDLFQVMKRPGLSTWNAVISGL-VQNNRHEAVLDLVREMQASGVR 171
            VHG  + A    M + Q+   P  S    ++S +     R   V  + ++M   GVR
Sbjct: 403 TVHGDSDLAELARMKILQL--EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVR 458


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/455 (32%), Positives = 246/455 (54%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD ++W +M+ G++Q G   E   +FR M    +   D  T  S+L ACG  S +  
Sbjct: 232 MTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIA-IDQYTFGSILTACGALSALEQ 290

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H ++I +    ++++ +AL+ MY+KC S+  A  +   M+ K+ +S          
Sbjct: 291 GKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIIS---------- 340

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A+I G  QN   E  + +  EMQ  G+ P+  T+ S+
Sbjct: 341 ---------------------WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSV 379

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + H  A+ +     I V+ A++  Y K G +  A R+FD       
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA++S YA  G A + + LF +ML  G++PD VTF  VLSAC+ +G V+K    F++
Sbjct: 440 VSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHS 499

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P  +HY CM+ + SR+ ++ EA EF+ +MP+ P A  WG LL    + GD+E
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  ++L EI+P+N  +Y+++ ++++  G+W+E  ++R  M++  + K PG SWI+  
Sbjct: 560 IGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F A D S   S+ IY  LE L   M EEGY
Sbjct: 620 NKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGY 654



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 223/443 (50%), Gaps = 44/443 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           M++RDIVS+N++IAG+S GG + +   ++  +L +   +RP  +T+ +++ A     D  
Sbjct: 98  MTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRA 157

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G + H  ++      + ++ + L+ MYAK   +  A+   DE+  K+ V Y+ +I+G +
Sbjct: 158 LGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLL 217

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               VE+A  LF+VM      TW  +++G  QN      L++ R M+  G+  +  T  S
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I +     S L+ GK+IH Y ++ RYD N++V +A++D Y+K   +  A+ VF R   ++
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN 337

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------ 287
           +I WTA+I  Y  +G + +AV +F+EM  +GI PD  T  +V+S+CA+            
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC 397

Query: 288 ----SGLVDKAWDIFNAMSGQYGIQPSVE---------------HYACMVGVLSRARRIS 328
               SGL+     + NA+   YG   S+E                +  +V   ++  R  
Sbjct: 398 LALVSGLMHYI-TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAK 456

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-----TGNY 380
           E  +   KM    VKP    +  +L   S +G VE G+    +   ++ ++       +Y
Sbjct: 457 ETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGR---SYFHSMQKDHGIVPIDDHY 513

Query: 381 IIMANLYSQAGRWDEADRVREQM 403
             M +LYS++G+  EA+   +QM
Sbjct: 514 TCMIDLYSRSGKLKEAEEFIKQM 536



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 162/341 (47%), Gaps = 23/341 (6%)

Query: 78  WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD-LFQVMKR 136
           ++ N L+  Y K G    AR + D M   +  +Y+A++S  + H  +   M+ LF  M +
Sbjct: 42  YLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLST-LAHARLLSDMEALFASMTQ 100

Query: 137 PGLSTWNAVISGLVQNNRH-EAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGK 194
             + ++NAVI+G      H +AV   +  +QA S VRP+ +T+S++    S   +   GK
Sbjct: 101 RDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGK 160

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           + H   ++  +  N +V + ++D YAK   +  A+R FD    ++++++  +I+      
Sbjct: 161 QFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCK 220

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
              +A  LF  M +     D +T+T +++    +GL  +A +IF  M  Q GI  +++ Y
Sbjct: 221 MVEEARRLFEVMTDR----DSITWTTMVTGFTQNGLESEALEIFRRMRFQ-GI--AIDQY 273

Query: 315 -------ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
                  AC  G LS   +  +   ++ +     +  V  AL+   S    ++L + V  
Sbjct: 274 TFGSILTAC--GALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETV-- 329

Query: 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
               +  +N  ++  +   Y Q G  +EA RV  +M+  G+
Sbjct: 330 -FRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/524 (30%), Positives = 261/524 (49%), Gaps = 71/524 (13%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+ V WN MI+GY   G + +   LF +M+   + +PD  T+VS+   C +S DI FG 
Sbjct: 279 RRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGI-KPDYSTMVSLFSLCSESLDIAFGK 337

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKC-------------------------------G 91
           ++H  + +  +K ++ +  AL+ MY KC                               G
Sbjct: 338 QIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSG 397

Query: 92  SLDYARALLDEMSDKDEVSYSAII--------------SGYMVHGFVEK----------- 126
               A  L  E   +D ++ S I+               G  +HG   K           
Sbjct: 398 CPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGS 457

Query: 127 --------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
                         +  +F  + +  L +WNA+ISG  Q+   +  L   R+MQ   +RP
Sbjct: 458 ALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRP 517

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N VTI+ I S+ +H S +   KE+HGY ++      + V+ ++I TYAK G ++ +   F
Sbjct: 518 NTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTF 577

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           ++   R+ + W +II     H    + + LF++M+ +GI+PD VTFTA+LSAC+H+G VD
Sbjct: 578 EKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVD 637

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +    F +M   + ++P +E Y CMV +L RA  +++A + +  MP  P  ++WG+LL  
Sbjct: 638 EGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGS 697

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
               GD  L + V +H+F++ P + G  +++ANLY   G+  E  +VR ++K+ GL K P
Sbjct: 698 CKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKP 757

Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G SWIE       F+A D S  +S++IY  +E L   ++  GY+
Sbjct: 758 GCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIKRAGYI 801



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 177/379 (46%), Gaps = 30/379 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + D+VSWN+MI+G+ +   Y      FR M+    + P+ V  VS + +C     +  
Sbjct: 170 MPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTH 229

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  V++S + ++ ++ ++LI MY KCGS+  A  + + + DKD V  +A+I     
Sbjct: 230 GREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVI----- 284

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +ISG V N      L L  +M   G++P+  T+ S+
Sbjct: 285 ---------------------WNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSL 323

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FSL S   ++  GK+IHG   K     NI V TA++D Y K G +    ++F R +  +L
Sbjct: 324 FSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNL 383

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W+A+IS  A  G  +KA+ LF E        D     AVL AC+   L  +   I + 
Sbjct: 384 IMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQI-HG 442

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGASISGD 358
           ++ + G    V   + +V + ++ R +  + +   ++  K     W AL+  Y      D
Sbjct: 443 LATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVS-WNALISGYAQDECAD 501

Query: 359 VELGKFVCDHLFEIEPENT 377
             L  F    L EI P   
Sbjct: 502 EALKAFRDMQLEEIRPNTV 520



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 145/285 (50%), Gaps = 37/285 (12%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N++I  Y++ GF+++   ++ +ML+  V   +      +++A G   D+  G ++H  V+
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
           +  +  D+ + N+L+ MY KCG ++ A  + ++M + D VS++ +ISG+      +K+MD
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGF------QKSMD 190

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFS 188
             + +       W                          G+ PN V  +SSI S  S   
Sbjct: 191 YTRSLMFFRSMVWEF------------------------GIYPNRVACVSSILSC-SSLQ 225

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RSLIIW 243
           +L  G+EIHG  VK+  D   Y+ +++I+ Y K G +  A+ +F+         R+ +IW
Sbjct: 226 SLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIW 285

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
             +IS Y ++G  S+A+ LF +M+  GI+PD  T  ++ S C+ S
Sbjct: 286 NVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSES 330



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 42/288 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S++D+VSWN++I+GY+Q    +E    FR+M    + RP+ VT+  +L  C   S +  
Sbjct: 479 LSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEI-RPNTVTIACILSVCAHLSVMTL 537

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             EVH ++I   +   + + N+LI  YAKCG ++ +    ++M ++++VS+++II G  +
Sbjct: 538 CKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGM 597

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           H                               +R + ++ L  +M ASG++P+ VT ++I
Sbjct: 598 H-------------------------------SRTDEMIVLFDKMVASGIKPDHVTFTAI 626

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  SH   +  G +     V++      +   T ++D   + G L+ A   +D      
Sbjct: 627 LSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQA---YDLIMAMP 683

Query: 240 LI----IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
                 IW +++ +   HGD   A  + N +    + P  V +  +L+
Sbjct: 684 CTPDDRIWGSLLGSCKNHGDEILAEIVANHIFK--LVPSSVGYRVLLA 729


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 243/463 (52%), Gaps = 32/463 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M +RD++ WN++I+G S  G + E  +LF  M    + L  +  T+ SVL++   S  I 
Sbjct: 367 MPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAIC 426

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              +VH    +  +  D  + N LI  Y KCG LDYA  +  E    D +S + +++   
Sbjct: 427 HTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALS 486

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                E A+ LF  M R GL                                P++  +SS
Sbjct: 487 QCDHGEDAIKLFVQMLRKGL-------------------------------EPDSFVLSS 515

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + +  +  S  + GK++H + +K ++  +++   A++  YAK G +  A   F     R 
Sbjct: 516 LLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERG 575

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W+A+I   A HG   +A+ LF+ ML+ G+ P+ +T T+VLSAC H+GLVD A   F 
Sbjct: 576 IVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFE 635

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   +GI  + EHYACM+ +L RA ++ +A E V+ MP + +A VWGALL  + +  D 
Sbjct: 636 SMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDP 695

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+   + LF +EPE +G ++++AN Y+ AG WDE  +VR+ MK+S + K P  SW+E 
Sbjct: 696 ELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEI 755

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
              + +F+  D S   +  IY  L  L  LM + GYV   EV+
Sbjct: 756 KDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVD 798



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 205/464 (44%), Gaps = 87/464 (18%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R+ VSWN+MI+ Y +     +   +FREM+ S   RP+      V+ AC  S D+  G 
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGE-RPNEFGFSCVVNACTGSRDLEAGR 225

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +VH  V+ +  + D++  NAL+ MY+K G                               
Sbjct: 226 QVHGAVVRTGYEKDVFTANALVDMYSKLGD------------------------------ 255

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +E A  +F+ M    + +WNA ISG V +      L+L+ +M++SG+ PN  T+SS+  
Sbjct: 256 -IEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLK 314

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +       G++IHG+ VK   D + +VA  ++D YAK GFL  A++VFD    R LI+
Sbjct: 315 ACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPD--PVTFTAVLSACAHS------------ 288
           W A+IS  +  G   + +SLF+ M   G+  D    T  +VL + A S            
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHAL 434

Query: 289 --------------GLVDKAWDIFNAMSGQ--YGIQPSVEHYA-------CMVGVLSRAR 325
                         GL+D  W       GQ  Y I+   E  +        M+  LS+  
Sbjct: 435 AEKIGLLSDSHVINGLIDSYWKC-----GQLDYAIKVFKESRSDDIISSTTMMTALSQCD 489

Query: 326 RISEATEFVSKMPVK---PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGN 379
              +A +   +M  K   P + V  +LL   +     E GK V  HL + +  +    GN
Sbjct: 490 HGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGN 549

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            ++ A  Y++ G  ++AD     + E G+      SW    GGL
Sbjct: 550 ALVYA--YAKCGSIEDADMAFSGLPERGIV-----SWSAMIGGL 586



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 167/352 (47%), Gaps = 35/352 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           VSW+S++  YS  G   +    FR M    V  P     + V+  C  + D+ FG +VH 
Sbjct: 69  VSWSSLVTAYSNNGMPRDALLAFRAMRGRGV--PCNEFALPVVLKC--APDVRFGAQVHA 124

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
             + + +  D+++ NAL+ +Y   G +D AR + DE               Y+  G    
Sbjct: 125 LAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDE---------------YVGVGGERN 169

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A+            +WN +IS  V+N++    + + REM  SG RPN    S + +  + 
Sbjct: 170 AV------------SWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTG 217

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
             +L+ G+++HG  V+  Y+++++ A A++D Y+K G +  A  VF++     ++ W A 
Sbjct: 218 SRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAF 277

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           IS    HG   +A+ L  +M ++G+ P+  T ++VL ACA +G  +    I   M     
Sbjct: 278 ISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV--KA 335

Query: 307 IQPSVEHYAC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +    E  A  +V + ++   + +A +    MP +    +W AL+ G S  G
Sbjct: 336 VADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGCSHDG 386



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 188/425 (44%), Gaps = 69/425 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D+VSWN+ I+G    G       L  +M +S ++ P+  T+ SVL+AC  +     
Sbjct: 266 MPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLV-PNVFTLSSVLKACAGAGAFNL 324

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H F++++    D ++   L+ MYAK G LD AR + D M  +D + ++A+ISG   
Sbjct: 325 GRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSH 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G   + + LF  M++ GL                   LD+           N  T++S+
Sbjct: 385 DGRHGEVLSLFHRMRKEGLD------------------LDV-----------NRTTLASV 415

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    +   +++H  A K     + +V   +ID+Y K G L  A +VF   +   +
Sbjct: 416 LKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDI 475

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           I  T +++A +       A+ LF +ML  G++PD    +++L+AC            H+ 
Sbjct: 476 ISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAH 535

Query: 290 LVDKAW--DIF--NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           L+ + +  D+F  NA+   Y    S+E                +A    S +P +     
Sbjct: 536 LIKRQFTSDVFAGNALVYAYAKCGSIE----------------DADMAFSGLPERGIVS- 578

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYS---QAGRWDEADRVRE 401
           W A++ G +  G    GK   D    +  E    N+I + ++ S    AG  D+A +  E
Sbjct: 579 WSAMIGGLAQHGH---GKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFE 635

Query: 402 QMKES 406
            MKE+
Sbjct: 636 SMKET 640



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 42/318 (13%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T+ S L   G S  +  G  +H+ +++S +       N L+ +Y++C     ARA+ DE+
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEI 63

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
            D   VS+S++++ Y  +G    A+  F                               R
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAF-------------------------------R 92

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
            M+  GV  N   +  +        +++ G ++H  AV  R   +++VA A++  Y   G
Sbjct: 93  AMRGRGVPCNEFALPVVLKC---APDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFG 149

Query: 224 FLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            +  A+R+FD + G    R+ + W  +ISAY  +  +  A+ +F EM+ +G +P+   F+
Sbjct: 150 MVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFS 209

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
            V++AC  S  ++    +  A+  + G +  V     +V + S+   I  A     KMP 
Sbjct: 210 CVVNACTGSRDLEAGRQVHGAVV-RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPA 268

Query: 340 KPSAKVWGALLYGASISG 357
                 W A + G    G
Sbjct: 269 ADVVS-WNAFISGCVTHG 285


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 245/461 (53%), Gaps = 33/461 (7%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V +N++I+GY+      +   +FR M  + V   D VT++ ++  C     +  G  +H 
Sbjct: 119 VCYNALISGYTANSKVSDAAFMFRRMKETGV-SVDSVTILGLVPLCTVPEYLWLGRSLHG 177

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
             ++     ++ + N+ I MY KCGS                               VE 
Sbjct: 178 ECVKGGTYSEVAVLNSFITMYMKCGS-------------------------------VES 206

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
              LF  M   GL TWNAVISG  QN     VL+L  +M++SGV P+  T+ S+ S  +H
Sbjct: 207 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAH 266

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G+E+      N +  N++++ A+I  YA+ G L  A+ VFD    +SL+ WTA+
Sbjct: 267 LGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAM 326

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I  Y  HG     ++LF++M+  GI+PD   F  VLSAC+HSGL DK  ++F AM  +Y 
Sbjct: 327 IGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 386

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           ++P  EHY+C+V +L RA R+ EA EF+  MPV+P   VWGALL    I  +V++ +   
Sbjct: 387 LEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAF 446

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
             + E EP N G Y++M+N+YS +   +   R+R  M+E    K PG S++E  G +  F
Sbjct: 447 AKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLF 506

Query: 427 VAKDTSGDKSEQIYLILERL-LGLMREEGYVLLDEVEEESA 466
           +A D S +++E+++ +L+ L   +M   G +  D  EE S+
Sbjct: 507 LAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRGEEVSS 547



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 182/402 (45%), Gaps = 39/402 (9%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
            SWN  +   +    + E  +L+R ML S    PD  +   +L++C   S  V G ++H 
Sbjct: 16  TSWNVRLRELAYQSLFTESISLYRSMLRSGS-SPDAFSFPFILKSCASLSLPVSGQQLHC 74

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE--VSYSAIISGYMVHGFV 124
            VI    + + ++  ALI MY KCG ++ AR + +E     +  V Y+A+ISGY  +  V
Sbjct: 75  HVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKV 134

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A  +F+ MK  G+S  +  I GLV                         T+     L 
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVP----------------------LCTVPEYLWL- 171

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
                   G+ +HG  VK      + V  + I  Y K G +   +R+FD    + LI W 
Sbjct: 172 --------GRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWN 223

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           A+IS Y+ +G A   + LF +M ++G+ PDP T  +VLS+CAH G      ++   +   
Sbjct: 224 AVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEAN 283

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            G  P+V     ++ + +R   +++A      MPVK S   W A++    + G  E G  
Sbjct: 284 -GFAPNVFLSNALISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGETGLT 341

Query: 365 VCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           + D + +  I P+    ++++ +  S +G  D+   +   MK
Sbjct: 342 LFDDMIKRGIRPDG-AVFVMVLSACSHSGLTDKGLELFRAMK 382



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +++WN++I+GYSQ G   +   LF +M +S V  PD  T+VSVL +C        
Sbjct: 214 MPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVC-PDPFTLVSVLSSCAHLGAKKI 272

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV   V  +    ++++ NALI MYA+CG+L  ARA+ D M  K  VS++A+I  Y +
Sbjct: 273 GQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 332

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV----LDLVREMQ 166
           HG  E  + LF  M + G+    AV   ++    H  +    L+L R M+
Sbjct: 333 HGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 382


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 239/424 (56%), Gaps = 7/424 (1%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           PD  T   +L +      +  G   H  ++   +  D ++  +L+ MY+ CG L  A  +
Sbjct: 59  PDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRI 118

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            DE   KD  +++++++ Y   G +  A  LF  M    + +W+ +I+G V   +++  L
Sbjct: 119 FDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEAL 178

Query: 160 DLVREMQASG-----VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           DL REMQ        V PN  T+S++ S       L+ GK +H Y  K   + +I + TA
Sbjct: 179 DLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTA 238

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLI-IWTAIISAYAAHGDASKAVSLFNEML-NNGIQ 272
           +ID YAK G L  A+RVFD    +  +  ++A+I   A +G   +   +F+EM  +N I 
Sbjct: 239 LIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNIN 298

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+ VTF  +L AC H GL++K    F  M+ ++GI PS++HY CMV +  R+  I EA  
Sbjct: 299 PNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAES 358

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
           F++ MP++P   +WG+LL G+ + GD++  +     L E++P N+G Y++++N+Y++ GR
Sbjct: 359 FIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGR 418

Query: 393 WDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           W E  R+R +M+  G+ K+PG S++E  G +  FV  D S  +SE+IY +LE ++  +RE
Sbjct: 419 WIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLRE 478

Query: 453 EGYV 456
            GYV
Sbjct: 479 AGYV 482



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 37/262 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML----NSPVLRPDGVTVVSVLQACGQSS 56
           M +R+++SW+ +I GY   G Y+E   LFREM     N   + P+  T+ +VL ACG+  
Sbjct: 153 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLG 212

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAII 115
            +  G  VH+++ +  +++D+ +  ALI MYAKCGSL+ A+ + D + S KD  +YSA+I
Sbjct: 213 ALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMI 272

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
               ++G  ++   +F  M                                ++ + PN+V
Sbjct: 273 CCLAMYGLTDECFQVFSEMT------------------------------TSNNINPNSV 302

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           T   I     H   +  GK       +      +I     ++D Y ++G +  A+     
Sbjct: 303 TFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIAS 362

Query: 235 FKGRS-LIIWTAIISAYAAHGD 255
                 ++IW +++S     GD
Sbjct: 363 MPMEPDVLIWGSLLSGSRMLGD 384



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 112/263 (42%), Gaps = 55/263 (20%)

Query: 141 TWNAVISGLVQN----NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
            WN +I  +V N     RH  +    R M+   V P+  T   +   F +  +L  G+  
Sbjct: 25  VWNIIIRAIVHNVSPPQRHSPISVYFR-MRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRT 83

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H   +    D++ +V T++++ Y+  G L  A R+FD    + L  W ++++AYA  G  
Sbjct: 84  HAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLI 143

Query: 257 SKAVSLFNEM----------LNNG--------------------------IQPDPVTFTA 280
           + A  LF+EM          L NG                          + P+  T + 
Sbjct: 144 NHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMST 203

Query: 281 VLSACAHSGLVDKA-WDIFNAMSGQYGIQPS-------VEHYACMVGVLSRARRISEATE 332
           VLSAC   G +++  W   ++   +YG++         ++ YA   G L RA+R+ +A  
Sbjct: 204 VLSACGRLGALEQGKW--VHSYIDKYGVEIDIVLGTALIDMYA-KCGSLERAKRVFDA-- 258

Query: 333 FVSKMPVKP-SAKVWGALLYGAS 354
             SK  VK  SA +    +YG +
Sbjct: 259 LGSKKDVKAYSAMICCLAMYGLT 281


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 253/456 (55%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D VSWNS+I G  + GF E+  + F++M  S  ++ D  T+ SVL +      +  
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKM-RSRDMKIDEYTLPSVLNSFASMKVMQN 59

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            + VH  +I++  +    + NALI MYAK G LD A  +  +M DKD VS          
Sbjct: 60  AISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVS---------- 109

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W ++++G   N  +E  + L  +M+ SGV P+ + ++S+
Sbjct: 110 ---------------------WTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASV 148

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  + +  G++IH   VK+  + ++ V  +++  YAK G +  A R FD    R +
Sbjct: 149 LSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDV 208

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+I  YA +G    ++  +++M+  G +PD +TF  +L AC+H+GL+      F A
Sbjct: 209 ISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEA 268

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P  EHYACM+ +L R+ +++EA   +++M V P A VW ALL    +  ++E
Sbjct: 269 MDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELE 328

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+    +LFE+EP N+  Y++++N+YS AG+W++A R+R  M+  G+ K PG SWIE +
Sbjct: 329 LGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETN 388

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + +F+++D +     +IY  ++ ++ L++E GYV
Sbjct: 389 SKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYV 424


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/471 (33%), Positives = 252/471 (53%), Gaps = 35/471 (7%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
            WN +I  Y++         ++ + L       D     SVL+ACGQ S    G E+H F
Sbjct: 126 QWNFVITSYTKRNQPRNALNVYAQ-LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGF 184

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSY----SAIISGYMVHGF 123
           V++  +  D+++ NAL+ MY +C  ++YAR + D+M ++D VS+    +A++  Y   G 
Sbjct: 185 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGH 244

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +  A  LF  + +  + +W A+I+G +++NR E    L   MQ   + PN +T+ +    
Sbjct: 245 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN---- 300

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                             K R + +  + TA++D YAK G ++ A R+F     R + +W
Sbjct: 301 ------------------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 342

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            AII+ +A HG   +A+ +F EM   G++P+ +TF  +L AC+H+GLV +   +F  M  
Sbjct: 343 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 402

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            +G+ P +EHY CMV +L RA  + EA E +  MP+KP+  VWGAL+    +  + +LG+
Sbjct: 403 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 462

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L EIEPEN G  ++M+N+Y+ A RW +A  VR+ MK  G+ K PG S IE +G +
Sbjct: 463 LAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 522

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESA 466
             F+  D S  +  +I  +L  +   + E GYV         +DE E+E+A
Sbjct: 523 HEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETA 573



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 122/289 (42%), Gaps = 66/289 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++++ +VSW +MIAG  +    EE   LF  M    +  P+ +T+++             
Sbjct: 255 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF-PNEITMLN------------- 300

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                    +  +++D  +  AL+ MYAKCG ++ A  L  E   +D   ++AII+G+ +
Sbjct: 301 ---------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 351

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+ E+A+D+F                                EM+  GV+PN +T   +
Sbjct: 352 HGYGEEALDIFA-------------------------------EMERQGVKPNDITFIGL 380

Query: 181 FSLFSHFSNLKGGKE-----IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
               SH   +  GK+     +H + +  + +        ++D   + G L  A  +    
Sbjct: 381 LHACSHAGLVTEGKKLFEKMVHTFGLVPQIEH----YGCMVDLLGRAGLLDEAHEMIKSM 436

Query: 236 KGR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
             + + I+W A+++A   H +         ++L   I+P+   +  ++S
Sbjct: 437 PIKPNTIVWGALVAACRLHKNPQLGELAATQLLE--IEPENCGYNVLMS 483


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 10/461 (2%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V + S I  +S  G +    AL  EML S  L P   T+ + L ACG    +  G  +H 
Sbjct: 94  VFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACG---GLAVGRALHG 150

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYMVHGFVE 125
           + ++  +  + ++  AL+GMYA+ G    AR L D M  D   VS +A+++ Y   G ++
Sbjct: 151 YAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLD 210

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
            A  LF  +    L  WNA++ G  Q+ R    L L R M  SGV P+ V++    S  +
Sbjct: 211 DARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVA 270

Query: 186 HFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSL 240
                + G+ +H +   +   R   N  V TA+ID Y K G L  A  VF       R +
Sbjct: 271 QLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDI 330

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+++ YA HG + +A++ F ++   G+ P  +TF  VL+AC+HSGLVD+  ++F +
Sbjct: 331 VAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRS 390

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDV 359
           M+ +YGI+P VEHY CMV +L RA R+ EA E V  M   KP A +W +LL    +  ++
Sbjct: 391 MAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNM 450

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+ + DHL      N+G Y++++N+Y+ AG W E  RVR  M+ SG+ K PG S +E 
Sbjct: 451 ELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEV 510

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460
              +  FVA D S  ++ +IY  LE + G+ R  G+V   E
Sbjct: 511 GRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTE 551



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +D++ WN+M+ GY+Q G   E   LFR ML S V  PD V+VV  L A  Q      
Sbjct: 219 LPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGV-EPDEVSVVLALSAVAQLGTAES 277

Query: 61  GMEVHNFVIES---HIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAII 115
           G  +H+FV  S    ++++  +  ALI MY KCGSL+ A A+  ++   D+D V+++A++
Sbjct: 278 GRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMV 337

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GV 170
           +GY +HG   +A+  F  ++  GL   +    G++    H  ++D  RE+  S     G+
Sbjct: 338 NGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGI 397

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
            P       +  L      ++   E+     + + D  ++ +        K   L   QR
Sbjct: 398 EPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMEL--GQR 455

Query: 231 VFDRFKGRSLI---IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           + D      L     +  + + YAA G+  +   +   M  +GIQ +P
Sbjct: 456 IADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEP 503



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 12/243 (4%)

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
           GV+   +T     +L +  ++ +   E+H  AV+   D++  V   +   YA +G L  A
Sbjct: 22  GVQHGVLTADRAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLA 81

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACA- 286
             +  R    + + +T+ I A+++ G    A++L +EM L++G+ P   T +A L AC  
Sbjct: 82  VALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGG 141

Query: 287 -HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
              G     + +  A+SG    +P V     ++G+ +RA   + A      M   P    
Sbjct: 142 LAVGRALHGYAVKLALSG----EPYVA--TALLGMYARAGDAAAARVLFDGMQPDPHVVS 195

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
             A+L   +  G ++  + + D L     ++   +  M + Y+Q GR  EA R+  +M  
Sbjct: 196 VTAMLTCYAKMGLLDDARSLFDGL---PSKDLICWNAMMDGYTQHGRPSEALRLFRRMLR 252

Query: 406 SGL 408
           SG+
Sbjct: 253 SGV 255


>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
          Length = 805

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/485 (31%), Positives = 275/485 (56%), Gaps = 42/485 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +DIV+WN +I+GY Q G  ++   + + ++    LR D VT+ +++ A  ++ ++  G E
Sbjct: 316 KDIVTWNLLISGYVQQGLVDDAMYMCK-LMRLENLRYDSVTLSTLMSAAARTQNLNLGKE 374

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV-------------- 109
           V  + I    + ++ + ++ + MYAKCGS+  A+ + +  ++KD +              
Sbjct: 375 VQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGL 434

Query: 110 ---------------------SYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNA 144
                                ++++II  ++ +G V++A ++F  M+     P L +W  
Sbjct: 435 SGEALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTT 494

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN- 203
           +++G VQN   E  +  +R+MQ SG+RPNA TIS   S  +H  +L  G+ IHGY ++N 
Sbjct: 495 MMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNF 554

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
           ++  ++   T+++D YAK G ++ A++VF       L +  A+ISAYA +G+  ++++L+
Sbjct: 555 QHSSSVSFETSLVDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLY 614

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
             + +  ++PD +TFT++L AC H+G + +A +IF  M  ++ ++P +EHY  MV +L+ 
Sbjct: 615 RRLEDMAMKPDNITFTSLLYACTHAGDIVQAINIFTEMVSKHDMKPCLEHYGLMVDILAS 674

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           +   ++A E + +MP KP A++  +L+   +     EL  ++   L E EPEN+GNY+ +
Sbjct: 675 SGETNKALELIEEMPYKPDARMIQSLVASCNKQHKTELVDYLSRQLLESEPENSGNYVTI 734

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG-GLQSFVAKDTSGDKSEQIYLI 442
           +N Y+  G W+E  ++RE MK  GL K PG SWI+  G G+  FVA D +  K+++I  I
Sbjct: 735 SNAYAIEGSWNEVMKMREMMKAKGLKKKPGCSWIQIKGEGVHVFVANDMTHIKNDEIQRI 794

Query: 443 LERLL 447
           L  LL
Sbjct: 795 LALLL 799



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 201/404 (49%), Gaps = 38/404 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +R++V+WN+++ GY Q G  EE   L  +M    +  P  VTV + L A      I  
Sbjct: 212 IPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGI-EPTRVTVSTCLSASANMGGIEE 270

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H   I + +++D  +  +++  Y K G ++YA  + D +  KD V           
Sbjct: 271 GKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIV----------- 319

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +ISG VQ    +  + + + M+   +R ++VT+S++
Sbjct: 320 --------------------TWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTL 359

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   NL  GKE+  Y++++ ++  I +A++ +D YAK G +  A++VF+    + L
Sbjct: 360 MSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDL 419

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W  +++AYA  G + +A+ LF +ML   + P+ +T+ +++ +   +G VD+A ++F  
Sbjct: 420 ILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQ 479

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISG 357
           M    GI P++  +  M+    +     EA  F+ KM    ++P+A      L   +   
Sbjct: 480 MQSS-GIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLV 538

Query: 358 DVELGKFVCDHLFE-IEPENTGNY-IIMANLYSQAGRWDEADRV 399
            +  G+ +  ++    +  ++ ++   + +LY++ G  ++A++V
Sbjct: 539 SLNFGRSIHGYIIRNFQHSSSVSFETSLVDLYAKCGDINQAEKV 582



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 198/413 (47%), Gaps = 49/413 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + VL PD   V +V +ACG      FG  
Sbjct: 114 RNVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVL-PDNYVVPNVCKACGALHWSWFGRG 172

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V+++ +   +++ ++L  MY KCG LD AR + DE+ +++ V+++A++ GY+ +G 
Sbjct: 173 VHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNGM 232

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A                               + L+ +M+  G+ P  VT+S+  S 
Sbjct: 233 NEEA-------------------------------IRLLSDMRKEGIEPTRVTVSTCLSA 261

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T+I++ Y K G +  A+ +FDR  G+ ++ W
Sbjct: 262 SANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTW 321

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-----KAWDIF 298
             +IS Y   G    A+ +   M    ++ D VT + ++SA A +  ++     + + I 
Sbjct: 322 NLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIR 381

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
           ++   +  +  S        G +  A+++ E+T        +    +W  LL   + SG 
Sbjct: 382 HSFESEIVLASSTVDMYAKCGSIVDAKKVFEST-------AEKDLILWNTLLAAYADSGL 434

Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             E  K   D L E  P N  T N II++ L  + G+ DEA  +  QM+ SG+
Sbjct: 435 SGEALKLFYDMLLESVPPNIITWNSIILSFL--RNGQVDEAKEMFLQMQSSGI 485



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 45/326 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIE--SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  +++  +    + +I   L+  YAKC +L            
Sbjct: 54  ILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDAL------------ 101

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
                              E A DLF  ++   + +W A+I    +    E  L    EM
Sbjct: 102 -------------------EVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEM 142

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +GV P+   + ++            G+ +HGY +K      ++VA+++ D Y K G L
Sbjct: 143 LENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVL 202

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A+ VFD    R+++ W A++  Y  +G   +A+ L ++M   GI+P  VT +  LSA 
Sbjct: 203 DDARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSAS 262

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G +++     A  I N +     +  S+ ++ C VG++       E  E +    + 
Sbjct: 263 ANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLI-------EYAEMIFDRIIG 315

Query: 341 PSAKVWGALLYGASISGDVELGKFVC 366
                W  L+ G    G V+   ++C
Sbjct: 316 KDIVTWNLLISGYVQQGLVDDAMYMC 341



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 69/151 (45%), Gaps = 2/151 (1%)

Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           P  S++   IS L ++      L LV+EM    VR        I     +  +L  G++I
Sbjct: 11  PSSSSYFHQISSLCKHGEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYERDLCTGQQI 70

Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           H   +KN   Y RN Y+ T ++  YAK   L  AQ +F R + R++  W AII      G
Sbjct: 71  HARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRIG 130

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
               A+  F EML NG+ PD      V  AC
Sbjct: 131 LCEGALLGFVEMLENGVLPDNYVVPNVCKAC 161


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 260/458 (56%), Gaps = 6/458 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ +SW++MIA YSQ G+ EE   LF +M+     +P+       L A      +  
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEG-FKPNISCFACTLSALASLRALSA 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H  V +  I  D++I ++LI +Y KCG  D  R + D + +K+ V +++++ GY +
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +E+  +LF+++      +W  +I+G ++N + E VL++   +  SG  PN  T SS+
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G  +HG  +K     +I+V TA+ D YAK G +  +++VF+R   ++ 
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNE 514

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I WT +I   A  G A +++ LF EM     + P+ +   +VL AC+H GLVDK    FN
Sbjct: 515 ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFN 574

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   YGI+P  +HY C+V +LSR+ R+ EA EF+  +P +P A  W ALL G     D 
Sbjct: 575 SMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDE 634

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ++ +     L+++   N+  Y++++N+Y+ AGRW +   +R+ M+E GL K  G SW+E 
Sbjct: 635 KIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEV 694

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL 457
              + SF ++D S  +S +IY  L+    L+R E  VL
Sbjct: 695 RNQVHSFYSEDGSHSQSNEIYGTLQ----LLRSEMLVL 728



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 183/385 (47%), Gaps = 34/385 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSW + I+G+ + G   E   LF  +L S V RP+ VT  SV++ACG+  D   GM 
Sbjct: 147 QNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV-RPNDVTFTSVVRACGELGDFGLGMS 205

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +   V+++  +  L + N+LI +  + G +D AR + D M  +D VS++AI+  Y+  G 
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F  M      +W+A+I+   Q+   E  L L  +M   G +PN    +   S 
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  G  IHG+  K   D+++++ +++ID Y K G     + VFD    ++++ W
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 244 TAIISAYAAHG-------------------------------DASKAVSLFNEMLNNGIQ 272
            +++  Y+ +G                                  K + +FN +L +G  
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+  TF++VL ACA    +DK  ++   +  + GIQ  +     +  + ++   I  + +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKII-KLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 333 FVSKMPVKPSAKVWGALLYGASISG 357
              +MP K     W  ++ G + SG
Sbjct: 505 VFERMPEKNEIS-WTVMIQGLAESG 528



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 11/320 (3%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           DL + N +I  Y + G+L  AR L DEM +++EVS+SA+ISG M +G VE++M  F+   
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
              + +W A ISG V+N  +   L L   +  SGVRPN VT +S+        +   G  
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           I G  VK  ++  + V+ ++I    + G +  A+RVFDR + R ++ WTAI+ AY   GD
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             +A  +F+EM     + + ++++A+++  + SG  ++A  +F+ M  Q G +P++  +A
Sbjct: 266 LREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMV-QEGFKPNISCFA 320

Query: 316 CMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
           C +  L+  R +S        V+K+ +     +  +L+      G  + G+ V D + E 
Sbjct: 321 CTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILE- 379

Query: 373 EPENTGNYIIMANLYSQAGR 392
             +N   +  M   YS  GR
Sbjct: 380 --KNVVCWNSMVGGYSINGR 397



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 122/317 (38%), Gaps = 79/317 (24%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           R  A T  S+   FS+   +  G  +H + +K  +    Y+A  ++  Y          +
Sbjct: 18  RAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQ 77

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM----------LNNGI--------- 271
           +   F G  L++   +ISAY   G+  +A  LF+EM          L +G+         
Sbjct: 78  IVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEES 137

Query: 272 ----QPDP----VTFTAVLSACAHSGLVDKAWDIF----------NAMS----------- 302
               + +P    V++TA +S    +GL  +A  +F          N ++           
Sbjct: 138 MWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGEL 197

Query: 303 GQYGIQPSV---------EHY----------ACMVGVLSRARRISEATEFVSKMPVKPSA 343
           G +G+  S+         EHY          +  +G +  ARR+ +  E       K   
Sbjct: 198 GDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-------KRDV 250

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             W A+L     +GD+   + + D   E+   N  ++  M   YSQ+G  +EA ++  +M
Sbjct: 251 VSWTAILDAYVETGDLREARRIFD---EMPERNEISWSAMIARYSQSGYAEEALKLFSKM 307

Query: 404 KESGLAKIPGRSWIECS 420
            + G    P  S   C+
Sbjct: 308 VQEGFK--PNISCFACT 322


>gi|15218823|ref|NP_171850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180302|sp|Q9LR72.1|PPR7_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g03510
 gi|9280666|gb|AAF86535.1|AC002560_28 F21B7.13 [Arabidopsis thaliana]
 gi|332189459|gb|AEE27580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 429

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 240/414 (57%), Gaps = 4/414 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++S    ++ Y+  G +E+   LF +M +S  L  D       L++C  +   V G  VH
Sbjct: 12  LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
              ++S+   + ++  AL+ MY KC S+ +AR L DE+  ++ V ++A+IS Y   G V+
Sbjct: 72  AHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVK 131

Query: 126 KAMDLFQVMK-RPGLSTWNAVISGLV--QNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           +A++L++ M   P  S++NA+I GLV  ++  + A+ +  R+M     +PN +T+ ++ S
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAI-EFYRKMIEFRFKPNLITLLALVS 190

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S     +  KEIH YA +N  + +  + + +++ Y + G +   Q VFD  + R ++ 
Sbjct: 191 ACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVA 250

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W+++ISAYA HGDA  A+  F EM    + PD + F  VL AC+H+GL D+A   F  M 
Sbjct: 251 WSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQ 310

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           G YG++ S +HY+C+V VLSR  R  EA + +  MP KP+AK WGALL      G++EL 
Sbjct: 311 GDYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELA 370

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           +     L  +EPEN  NY+++  +Y   GR +EA+R+R +MKESG+   PG SW
Sbjct: 371 EIAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSSW 424



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 32/192 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP------------------------ 36
           + +R+ V WN+MI+ Y+  G  +E   L+  M   P                        
Sbjct: 109 IPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIE 168

Query: 37  --------VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
                     +P+ +T+++++ AC          E+H++   + I+    + + L+  Y 
Sbjct: 169 FYRKMIEFRFKPNLITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYG 228

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
           +CGS+ Y + + D M D+D V++S++IS Y +HG  E A+  FQ M+   ++  +     
Sbjct: 229 RCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLN 288

Query: 149 LVQNNRHEAVLD 160
           +++   H  + D
Sbjct: 289 VLKACSHAGLAD 300



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 32/147 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+W+S+I+ Y+  G  E     F+EM  + V  PD +  ++VL+AC  +     
Sbjct: 243 MEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKV-TPDDIAFLNVLKACSHA----- 296

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+     V    ++ D          Y    S D+   L+D +S                
Sbjct: 297 GLADEALVYFKRMQGD----------YGLRASKDHYSCLVDVLSRV-------------- 332

Query: 121 HGFVEKAMDLFQVM-KRPGLSTWNAVI 146
            G  E+A  + Q M ++P   TW A++
Sbjct: 333 -GRFEEAYKVIQAMPEKPTAKTWGALL 358


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 249/470 (52%), Gaps = 39/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ +S+ ++I GY++   + E   LF   L+  VL P+  T  SVLQAC     +  
Sbjct: 99  MPERNTISFVTLIQGYAESVRFLEAIELFVR-LHREVL-PNQFTFASVLQACATMEGLNL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  VI+  +  D+++ NAL+ +YAKCG ++ +  L  E   +++V           
Sbjct: 157 GNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDV----------- 205

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN VI G VQ    E  L L   M    V+   VT SS 
Sbjct: 206 --------------------TWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSA 245

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + L+ G +IH   VK  +D++I V  A+ID YAK G +  A+ VFD    +  
Sbjct: 246 LRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDE 305

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS Y+ HG   +A+ +F++M    ++PD +TF  VLSACA++GL+D+    F +
Sbjct: 306 VSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTS 365

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+P +EHY CMV +L R   + +A + + ++P +PS  VW ALL    I  D+E
Sbjct: 366 MIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIE 425

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     + E+EP++   +++++N+Y+ A RWD    VR+ MK  G+ K PG SWIE  
Sbjct: 426 LGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQ 485

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           G + SF   DTS  +   I  +LE L    ++ GY      VLLD  +EE
Sbjct: 486 GTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEE 535



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 181/438 (41%), Gaps = 76/438 (17%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLN--SPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +V  N+ +  +S+ GF  +   L +E +   SP    +     + LQ C Q  +   G  
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQEFVGHVSPS-EFNSHAYANALQDCIQKDEPSRGKG 59

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +++    +DL+  N L+ MY K   L  A  L DEM +++ +S+  +I GY     
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A++LF  + R                                 V PN  T +S+   
Sbjct: 120 FLEAIELFVRLHRE--------------------------------VLPNQFTFASVLQA 147

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  G +IH + +K     +++V+ A++D YAK G +  +  +F     R+ + W
Sbjct: 148 CATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTW 207

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD 292
             +I  +   GD  KA+ LF  ML   +Q   VT+++ L ACA           HS  V 
Sbjct: 208 NTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVK 267

Query: 293 KAWD----IFNAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------EATEF 333
             +D    + NA+   Y    S++    +  ++++   +S               EA   
Sbjct: 268 TTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRI 327

Query: 334 VSKM---PVKPSAKVWGALLYGASISGDVELGK-----FVCDHLFEIEPENTGNYIIMAN 385
             KM    VKP    +  +L   + +G ++ G+      + DH   IEP    +Y  M  
Sbjct: 328 FDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDH--GIEP-CIEHYTCMVW 384

Query: 386 LYSQAGRWDEADRVREQM 403
           L  + G  D+A ++ +++
Sbjct: 385 LLGRGGHLDKAVKLIDEI 402


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 251/473 (53%), Gaps = 41/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+WNS+I+G  Q G       +F+ M  S V  PD +T+VS+  A  Q  D   
Sbjct: 230 MECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGV-SPDVLTLVSLASAIAQGGDGRS 288

Query: 61  GMEVHNFVIESHIKMDLWIC-NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              +H +V+     +D  I  NA++ MYAK  +++ A+ + D M  +D VS         
Sbjct: 289 AKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVS--------- 339

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTIS 178
                                 WN +I+G +QN      ++    MQ   G++    T  
Sbjct: 340 ----------------------WNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFV 377

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+   +SH   L+ G  +H  ++K   + ++YV T +ID YAK G L  A  +F++   R
Sbjct: 378 SVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRR 437

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S   W AIIS    HG  ++A++LF+ M   GI+PD VTF ++L+AC+H+GLVD+    F
Sbjct: 438 STGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFF 497

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M   Y I P  +HYACM  +L RA ++ EA  F+  MP+KP + VWGALL    I G+
Sbjct: 498 DVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGN 557

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VE+GK    +LFE++PEN G Y++M+N+Y++ G+WD  D VR  ++   L K PG S IE
Sbjct: 558 VEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIE 617

Query: 419 CSGGLQSFVAKDTS--GDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F + + +    + E+I   L  LL  +R  GYV     +L +VE++
Sbjct: 618 VKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDD 670



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 177/359 (49%), Gaps = 36/359 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD+ +WN+M++G  +     E   LF  M+   V   D VTV SVL  C    D V 
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVA-GDTVTVSSVLPMCVLLGDQVL 187

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            + +H + ++  +  +L++CNALI +Y K G L+ A+ +   M  +D V++++IISG   
Sbjct: 188 ALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQ 247

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G    A+ +FQ M+                                SGV P+ +T+ S+
Sbjct: 248 RGQTAAALKMFQGMR-------------------------------GSGVSPDVLTLVSL 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +   + +  K +H Y ++  +D  +I    AI+D YAK   +  AQR+FD    + 
Sbjct: 277 ASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQD 336

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            + W  +I+ Y  +G A++AV  +  M  + G++    TF +VL A +H G + +   + 
Sbjct: 337 SVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM- 395

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           +A+S + G+   V    C++ + ++  +++EA     KMP + S   W A++ G  + G
Sbjct: 396 HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHG 453



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 149/360 (41%), Gaps = 67/360 (18%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           N++IA +S+         L R +L+     RPDG T  S+++A   ++            
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAA--------- 87

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH-----GF 123
                   L  C   +G+                      V  S   SG +VH     G 
Sbjct: 88  -------QLHACALRLGL----------------------VRPSVFTSGSLVHAYLRFGR 118

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F  M    +  WNA++SGL +N R    + L   M   GV  + VT+SS+  +
Sbjct: 119 ISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPM 178

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
                +      +H YAVK+  D+ ++V  A+ID Y K G L  AQ VF   + R L+ W
Sbjct: 179 CVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTW 238

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG-----------LVD 292
            +IIS     G  + A+ +F  M  +G+ PD +T  ++ SA A  G           ++ 
Sbjct: 239 NSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMR 298

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + WD+ + ++G             +V + ++   I  A      MPV+ S   W  L+ G
Sbjct: 299 RGWDVDDIIAGN-----------AIVDMYAKLSNIEAAQRMFDSMPVQDSVS-WNTLITG 346


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 272/494 (55%), Gaps = 53/494 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEE----CKALFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           M ++D+V+WN +I+GY Q G  EE    C+ + RE L     + D VT+ +++ A   + 
Sbjct: 299 MIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENL-----KFDCVTLSTLMSAATSTQ 353

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           ++  G E+  + I   ++ D+ + +  + MYAKCGS+  A+ + D    KD + ++ ++S
Sbjct: 354 NLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLS 413

Query: 117 GYMVHGFVEKAMDLFQVMKR---------------------------------------P 137
            Y   G   +A+ LF  M+                                        P
Sbjct: 414 AYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFP 473

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            L +W  +++GLVQN   E  +  +R+MQ S +RPNA TI+   S  ++ ++L  G+ IH
Sbjct: 474 NLISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIH 533

Query: 198 GYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           GY ++N+ Y  +  + T+++D YAK G ++ A+RVF       L ++ A+ISAYA +G  
Sbjct: 534 GYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKV 593

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            +A++L+  + + G++PD +T T++LS C +   V++A ++F+ M  ++G++P +EHY  
Sbjct: 594 REAITLYRSLEDGGVKPDNITITSLLS-CNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGL 652

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           MV +L+ A    +A   + +MP KP A++  +L    S     EL +++  HL E EP+N
Sbjct: 653 MVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDN 712

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG---GLQSFVAKDTSG 433
           +GNY++++N Y+  G WDE  ++RE MK  GL K PG SWI+  G   G+  FVA D + 
Sbjct: 713 SGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDKTH 772

Query: 434 DKSEQIYLILERLL 447
            ++++I  +L  LL
Sbjct: 773 LRNDEIQRMLALLL 786



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 194/401 (48%), Gaps = 38/401 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+ V+WN+++ GY Q G  EE   L  EM    +  P  VTV + L A      I  G +
Sbjct: 201 RNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGI-EPTRVTVSTCLSASANMGGIEEGKQ 259

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H   I + +++D  +  +++  Y K G ++YA  + D M +KD V              
Sbjct: 260 SHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVV-------------- 305

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                            TWN +ISG VQ    E  + + + M+   ++ + VT+S++ S 
Sbjct: 306 -----------------TWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSA 348

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   NLK GKEI  Y +++  + +I +A+  +D YAK G +  A++VFD    + LI+W
Sbjct: 349 ATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILW 408

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             ++SAYA  G + +A+ LF EM    + P+ +T+  ++ +   +G V++A ++F  M  
Sbjct: 409 NTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQS 468

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
             GI P++  +  M+  L +     EA  F+ KM    ++P+A      L   +    + 
Sbjct: 469 S-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLH 527

Query: 361 LGKFVCDHLFEIEPENTGNYI--IMANLYSQAGRWDEADRV 399
            G+ +  ++   +  +    I   + ++Y++ G  ++A+RV
Sbjct: 528 FGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERV 568



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 197/424 (46%), Gaps = 42/424 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R++ SW ++I    + G  E     F EML + +  PD   V +V +ACG      FG  
Sbjct: 100 RNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIF-PDNFVVPNVCKACGALQWSRFGRG 158

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH +V ++ +   +++ ++L  MY KCG LD AR + D + D++ V+++A++ GY+ +G 
Sbjct: 159 VHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGM 218

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A                               + L+ EM+  G+ P  VT+S+  S 
Sbjct: 219 NEEA-------------------------------IRLLSEMRKEGIEPTRVTVSTCLSA 247

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   ++ GK+ H  A+ N  + +  + T+I++ Y K G +  A+ +FD    + ++ W
Sbjct: 248 SANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTW 307

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +IS Y   G   +A+ +   M    ++ D VT + ++SA   +  +    +I      
Sbjct: 308 NLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEI-QCYCI 366

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELG 362
           ++G++  +   +  V + ++   I  A + V    V+    +W  LL   + SG   E  
Sbjct: 367 RHGLESDIVLASTAVDMYAKCGSIVNAKK-VFDSTVQKDLILWNTLLSAYADSGLSGEAL 425

Query: 363 KFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR-SWIEC 419
           +   +   E  P N  T N II++ L  + G+ +EA  +  QM+ SG+   P   SW   
Sbjct: 426 RLFYEMQLESVPPNVITWNLIILSLL--RNGQVNEAKEMFLQMQSSGI--FPNLISWTTM 481

Query: 420 SGGL 423
             GL
Sbjct: 482 MNGL 485



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 45/326 (13%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
           +LQ C    D+  G ++H  +++       + +I   L+  YAKC +L+ A+ L  ++  
Sbjct: 40  ILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRV 99

Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
           ++  S++AII                 V  R GL      + G V             EM
Sbjct: 100 RNVFSWAAIIG----------------VKCRIGLG--EGALMGFV-------------EM 128

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             +G+ P+   + ++          + G+ +HGY  K      ++VA+++ D Y K G L
Sbjct: 129 LENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVL 188

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A++VFD    R+ + W A++  Y  +G   +A+ L +EM   GI+P  VT +  LSA 
Sbjct: 189 DDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSAS 248

Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           A+ G +++     A  I N +     +  S+ ++ C VG++  A  I +         ++
Sbjct: 249 ANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGM-------IE 301

Query: 341 PSAKVWGALLYGASISGDVELGKFVC 366
                W  L+ G    G VE   ++C
Sbjct: 302 KDVVTWNLLISGYVQQGLVEEAIYMC 327



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 12/213 (5%)

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK--N 203
           +S L +N      L LV EM    +R        I     +  +L  G++IH   +K  +
Sbjct: 6   VSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGD 65

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            Y RN Y+ T ++  YAK   L  AQ +F + + R++  W AII      G    A+  F
Sbjct: 66  FYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGF 125

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS- 322
            EML NGI PD      V  AC         W  F      Y  +  + H   +   L+ 
Sbjct: 126 VEMLENGIFPDNFVVPNVCKACGA-----LQWSRFGRGVHGYVAKAGLHHCVFVASSLAD 180

Query: 323 ---RARRISEATEFVSKMPVKPSAKVWGALLYG 352
              +   + +A +    +P + +A  W AL+ G
Sbjct: 181 MYGKCGVLDDARKVFDYIPDR-NAVAWNALMVG 212


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 249/454 (54%), Gaps = 32/454 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIV 59
           M ++D+V+W S+I+G  + G ++E   +F +M +    L+PD   + SV  AC     + 
Sbjct: 434 MEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALR 493

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           FG++VH  +I++ + +++++ ++LI +Y+KCG        L EM                
Sbjct: 494 FGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCG--------LPEM---------------- 529

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                  A+ +F  M    +  WN++IS   +NN  E  +DL   M + G+ P++V+I+S
Sbjct: 530 -------ALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITS 582

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +    S  ++L  GK +HGY ++     + ++  A+ID Y K GF   A+ +F + + +S
Sbjct: 583 VLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKS 642

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           LI W  +I  Y +HGD   A+SLF+EM   G  PD VTF +++SAC HSG V++  +IF 
Sbjct: 643 LITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFE 702

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI+P++EHYA MV +L RA  + EA  F+  MP++  + +W  LL  +    +V
Sbjct: 703 FMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNV 762

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG    + L  +EPE    Y+ + NLY +AG  +EA ++   MKE GL K PG SWIE 
Sbjct: 763 ELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEV 822

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           S     F +  +S     +I+ +L RL   M +E
Sbjct: 823 SDRTNVFFSGGSSSPMKAEIFNVLNRLKSNMVDE 856



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 27/284 (9%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           S NS I    Q G Y +   L+ +   S        T  S+L+AC   +++ +G  +H  
Sbjct: 26  SINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V+    + D +I  +L+ MY KCG LDYA  + D  S     S S +            A
Sbjct: 86  VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQ----SQSGV-----------SA 130

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            D         ++ WN++I G  +  R +  +   R M   GVRP+A ++S + S+    
Sbjct: 131 RD---------VTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKE 181

Query: 188 SNLK--GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWT 244
            N +   GK+IHG+ ++N  D + ++ TA+ID Y K G    A RVF   + +S +++W 
Sbjct: 182 GNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWN 241

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
            +I  +   G    ++ L+    NN ++    +FT  L AC+ S
Sbjct: 242 VMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQS 285



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 160/367 (43%), Gaps = 42/367 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD+  WNSMI GY +   ++E    FR ML   V RPD  ++  V+    +  +   
Sbjct: 128 VSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGV-RPDAFSLSIVVSVMCKEGNFRR 186

Query: 61  --GMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLDYARALLDEMSDKDEVSYSAIISG 117
             G ++H F++ + +  D ++  ALI MY K G S+D  R  + E+ DK  V        
Sbjct: 187 EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFV-EIEDKSNVVL------ 239

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                   WN +I G   +   E+ LDL    + + V+  + + 
Sbjct: 240 ------------------------WNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSF 275

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +      S   N   G++IH   VK     + YV T+++  Y+K G +  A+ VF     
Sbjct: 276 TGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVD 335

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + L IW A+++AYA +     A+ LF  M    + PD  T + V+S C+  GL +    +
Sbjct: 336 KRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSV 395

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +A   +  IQ +    + ++ + S+     +A      M  K     WG+L     ISG
Sbjct: 396 -HAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMV-AWGSL-----ISG 448

Query: 358 DVELGKF 364
             + GKF
Sbjct: 449 LCKNGKF 455



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 34/286 (11%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           K ++V WN MI G+   G  E    L+    N+ V +    +    L AC QS +  FG 
Sbjct: 234 KSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSV-KLVSTSFTGALGACSQSENSGFGR 292

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  V++  +  D ++C +L+ MY+KCG +  A  +   + DK    ++A+++ Y  + 
Sbjct: 293 QIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEND 352

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           +   A+DLF  M                   R ++VL            P++ T+S++ S
Sbjct: 353 YGYSALDLFGFM-------------------RQKSVL------------PDSFTLSNVIS 381

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S       GK +H    K        + +A++  Y+K G    A  VF   + + ++ 
Sbjct: 382 CCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVA 441

Query: 243 WTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACA 286
           W ++IS    +G   +A+ +F +M   ++ ++PD    T+V +ACA
Sbjct: 442 WGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACA 487


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 245/470 (52%), Gaps = 47/470 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+ SWN+M++G S+ G  EE +A+FR                              
Sbjct: 98  MPVRDVTSWNTMVSGLSKNGAIEEAEAMFR------------------------------ 127

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
            M   N V         W  NA++   A  G +  A  L     +K D + ++A++SGYM
Sbjct: 128 AMPARNAVS--------W--NAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYM 177

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G V+KAM+ F+ M    L +WNAV++G V+N+R    L + + M + + V+PN  T+S
Sbjct: 178 DTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLS 237

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    S+ S L  G+++H + +K    R+I V T+++  Y K G L  A ++FD    +
Sbjct: 238 SVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK 297

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+IS YA HG   KA+ LF +M + G+ PD +T  AVL+AC H+GL D     F
Sbjct: 298 DIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 357

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   Y I+P V+HY+CMV +L RA  +  A   +  MP +P    +G LL    +  +
Sbjct: 358 ETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKN 417

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E  +F    L E +P+N G Y+ +AN+Y+ A RWD+  RVR  MK++ + K PG SW+E
Sbjct: 418 LEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWME 477

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEE 463
             G    F + D    + + I+  L+RL  LM+  GY       L +VEE
Sbjct: 478 IKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEE 527



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 64/363 (17%)

Query: 81  NALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP 137
           N L+  YAK    G L  AR L D +   D VSY+ ++S +   G ++ A  +F  M   
Sbjct: 42  NCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVR 101

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            +++WN ++SGL +N   E    + R M A     NAV+ +++ +  +   ++   + + 
Sbjct: 102 DVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR----NAVSWNAMVAARASSGDMGAAENLF 157

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
             A +     +  + TA++  Y  TG +  A   F     R+L+ W A+++ Y  +  A 
Sbjct: 158 RNAPEK---TDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAG 214

Query: 258 KAVSLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            A+ +F  M+ + I QP+P T ++VL  C+            N  +  +G Q    H  C
Sbjct: 215 DALRVFKTMVEDAIVQPNPSTLSSVLLGCS------------NLSALGFGRQ---VHQWC 259

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           M                  K+P+  S  V  +LL      GD++     C    E+  ++
Sbjct: 260 M------------------KLPLGRSITVGTSLLSMYCKCGDLD---DACKLFDEMHTKD 298

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE-------------CSGGL 423
              +  M + Y+Q G   +A ++ E+MK+ G+  +P   WI              C  G+
Sbjct: 299 IVAWNAMISGYAQHGGGRKAIKLFEKMKDEGV--VP--DWITLLAVLTACIHTGLCDFGI 354

Query: 424 QSF 426
           Q F
Sbjct: 355 QCF 357



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 17/156 (10%)

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYA---AHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
           L GA+  F   + ++   +  +++ YA     G  + A  LF+ +      PD V++  +
Sbjct: 23  LAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSI----PHPDAVSYNTL 78

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
           LS     G +D AW +F+ M  +      V  +  MV  LS+   I EA      MP + 
Sbjct: 79  LSCHFACGDIDGAWRVFSTMPVR-----DVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR- 132

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           +A  W A++   + SGD+       ++LF   PE T
Sbjct: 133 NAVSWNAMVAARASSGDMG----AAENLFRNAPEKT 164


>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 497

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 249/454 (54%), Gaps = 25/454 (5%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS---SDIVFGME 63
           VSW S I+ + +   + +  + F +ML + V  P+ +T++++L AC  S   + I FG  
Sbjct: 53  VSWTSSISHHCKNNNFLKAASEFIQMLEAEV-EPNHITLITLLSACAHSPSKTSITFGAA 111

Query: 64  VHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H    +    M D+ +  ALI MYAKCG LDYAR + D+M  ++ VS++ +I GYM +G
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V+ A+ LF  +    + +W  VI G V+   +E  L+  REMQ +GV P+ VT+ +I S
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++   L  G  +H   +K  +  N+ V  ++ID YA+ G +  A++VFD    R+L+ 
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W +II  +A +G A KA+S F                     C+H+GL+D+   IF  + 
Sbjct: 292 WNSIIVGFAVNGLADKALSFF--------------------PCSHAGLIDEGLKIFADIK 331

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             +   P +EHY C+V + SRA R+ EA + + KMP+ P+  V G+LL      GDVEL 
Sbjct: 332 RDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELA 391

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + V  +  E+ P    NY++ +N+Y+  G+WD A +VR +MKE GL K    S IE   G
Sbjct: 392 EKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSG 451

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           +  FV+ D   ++++ IY  LE L   +   GYV
Sbjct: 452 IHKFVSGDKYHEENDYIYSALELLSFELHLYGYV 485



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 60/293 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQ--------------------------GGF-----YEECKALF 29
           M  R++VSWN+MI GY +                          GGF     YEE    F
Sbjct: 152 MGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECF 211

Query: 30  REMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89
           REM  + V+ PD VTV++++ AC     +  G+ VH  V++   + ++ + N+LI MYA+
Sbjct: 212 REMQLAGVV-PDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYAR 270

Query: 90  CGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQV---------------M 134
           CG ++ AR + D MS ++ VS+++II G+ V+G  +KA+  F                 +
Sbjct: 271 CGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFPCSHAGLIDEGLKIFADI 330

Query: 135 KR-----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           KR     P +  +  ++    +  R +   D++++M    + PN V + S+ +      +
Sbjct: 331 KRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMP---MMPNEVVLGSLLAACRTQGD 387

Query: 190 LKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           ++  +++  Y V+     D N  + + I   YA  G   GA +V    K R L
Sbjct: 388 VELAEKVMKYQVELYPGGDSNYVLFSNI---YAAVGKWDGASKVRREMKERGL 437



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 42/223 (18%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSWNS+I G++  G  ++  + F                      C  +  I  
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFF---------------------PCSHAGLIDE 322

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G+++   +   H    +++ + C  L+ +Y++ G L  A  ++ +M    +EV   ++++
Sbjct: 323 GLKIFADIKRDHRNSPRIEHYGC--LVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLA 380

Query: 117 GYMVHGFVEKAMDL--FQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPN 173
                G VE A  +  +QV   PG  +   + S +     + +    + REM+  G++ N
Sbjct: 381 ACRTQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKN 440

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAI 215
                        FS+++    IH +   ++Y + N Y+ +A+
Sbjct: 441 LA-----------FSSIEIDSGIHKFVSGDKYHEENDYIYSAL 472


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 250/455 (54%), Gaps = 1/455 (0%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +RDI  ++S++   S     E    + R ML++  L PD   + SV     +      G 
Sbjct: 148 RRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGR 207

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H   + S    D  + ++L+ MY KCGS D  R + D MS K+ V ++A++SGY  +G
Sbjct: 208 QLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNG 267

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIF 181
             E+A+ LF+ M    L  W A+ISGLV        ++L  EM+  GVR  +A  +S + 
Sbjct: 268 RSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVI 327

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              +  +    G+++HG  ++  +  N+ V  A+ID Y+K   +  A+ VF+    R +I
Sbjct: 328 GGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVI 387

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT ++   A HG A +A++L++ M+  G +P+ VTF  ++ AC+H+GLV K   +F +M
Sbjct: 388 SWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESM 447

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             +YGI P ++HY C + +LSR+  + EA E ++ MP +P    WGALL   +   D E+
Sbjct: 448 KNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEM 507

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
              + D L E+ P+++  YI+++N+Y+  G+WD   +VR+ M    + K PG SWIE   
Sbjct: 508 CIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGR 567

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             + F A +   D  E+I + LE ++  MR+ GYV
Sbjct: 568 EFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYV 602



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 34/220 (15%)

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           AL+  YAK   L  A  L DE   +D   YS++++        E A+ + + M       
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCM------- 177

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
                                  + A  + P+   ISS+ S+F+   + + G+++H + V
Sbjct: 178 -----------------------LSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFV 214

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            + Y+ +  V ++++D Y K G     ++VFD    ++ ++WTA++S YA++G + +A+ 
Sbjct: 215 VSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQ 274

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           LF  M    +      +TA++S   ++G    A ++F  M
Sbjct: 275 LFRSMPGRNL----FAWTALISGLVNTGESVGAVELFVEM 310



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 142/340 (41%), Gaps = 73/340 (21%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           MS ++ V W ++++GY+  G  EE   LFR M    +                       
Sbjct: 248 MSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELF 307

Query: 38  --LRPDGVT-----VVSVLQACGQSSDI---VFGMEVHNFVIESHIKMDLWICNALIGMY 87
             +R DGV      V+S++   G S+D+   V G ++H   +      ++ + NALI MY
Sbjct: 308 VEMRRDGVRIDDAFVLSIV--IGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 365

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           +KC  +  AR + + ++ +D +S++ ++ G   HG  E+A+ L+                
Sbjct: 366 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD--------------- 410

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-- 205
                            M  +G +PN VT   +    SH   ++ G+++   ++KN Y  
Sbjct: 411 ----------------RMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLF-ESMKNEYGI 453

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGDASKAVSLFN 264
              +   T  +D  +++G L  A+ +            W A++SA   + DA   + + +
Sbjct: 454 TPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISD 513

Query: 265 EMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++L   ++P D  T+  + +  A +G  D    +   M G
Sbjct: 514 KLLE--LRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIG 551



 Score = 38.1 bits (87), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 13/173 (7%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           + +H   +K     +     A++  YAK+  L  A  +FD    R + I++++++A +  
Sbjct: 105 RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 164

Query: 254 GDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACA-----HSGLVDKAWDIFNAMSGQYGI 307
                A+ +   ML+ + + PD    ++V S  A       G    A  + +  +G   +
Sbjct: 165 ASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVV 224

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           + S+    C  G     R++ ++      M  K S  VW AL+ G + +G  E
Sbjct: 225 KSSLVDMYCKCGSPDDGRKVFDS------MSAKNSV-VWTALVSGYASNGRSE 270


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/521 (31%), Positives = 262/521 (50%), Gaps = 65/521 (12%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN+M  GYSQ   +++   LFR+M    V+ P+  T   +L++C + + +  G EVH FV
Sbjct: 19  WNAMFRGYSQNESHKDVIVLFRQMKGLDVM-PNCFTFPVILKSCVKINALKEGEEVHCFV 77

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY---------- 118
           I+S  + + ++   LI MYA  G++  A  +  EM +++ ++++A+I+GY          
Sbjct: 78  IKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTAR 137

Query: 119 ----------------MVHGFVE-----KAMDL--------------------------- 130
                           M+ G++E     +A +L                           
Sbjct: 138 RLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMA 197

Query: 131 ----FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFS 185
               F+ M    + +WNA+I G  +N     VL   + M   G V PN  T+ ++ S  +
Sbjct: 198 CERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACA 257

Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               L  GK +H YA  + Y  N+YV  A++D YAK G +  A  VF     + LI W  
Sbjct: 258 RLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNT 317

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           II   A HG  + A++LF+ M   G  PD +TF  +L AC H GLV+  +  F +M+  Y
Sbjct: 318 IIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDY 377

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            I P +EHY C+V +L RA  ++ A +F+ KMP++  A +W ALL    +  +VEL +  
Sbjct: 378 SIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELA 437

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
            + L E EP+N  NY++++N+Y   GRW +  R++  M+++G  K+PG S IE +  L  
Sbjct: 438 LEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVE 497

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGYVL-LDEVEEES 465
           F + D    + EQIY  L  L  L+R  GYV  L E++E +
Sbjct: 498 FYSLDERHPEKEQIYGTLRTLTKLLRSSGYVPGLMELDERN 538



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 123/285 (43%), Gaps = 46/285 (16%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A  +F  +  P  S WNA+  G  QN  H+ V+ L R+M+   V PN  T   I   
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
               + LK G+E+H + +K+ +  N +VAT +ID YA  G +H A RVF     R++I W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           TA+I+ Y    D   A  LF+      + P                  ++   ++N M  
Sbjct: 121 TAMINGYITCCDLVTARRLFD------LAP------------------ERDIVLWNTMIS 156

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y                  A+ +  A E   KMP K     W  +L G + +GDV    
Sbjct: 157 GY----------------IEAKDVIRARELFDKMPNK-DVMSWNTVLNGYASNGDV---- 195

Query: 364 FVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
             C+ LFE  PE N  ++  +   Y++ G + E     ++M   G
Sbjct: 196 MACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDG 240



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SWN++I GY++ G + E  + F+ ML    + P+  T+V+VL AC +   +  
Sbjct: 205 MPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDL 264

Query: 61  GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  VH +  ESH  K ++++ NAL+ MYAKCG ++ A  +   M +KD +S++ II G  
Sbjct: 265 GKWVHVYA-ESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLA 323

Query: 120 VHGFVEKAMDLFQVMKRPG 138
           VHG    A++LF  MK  G
Sbjct: 324 VHGHGADALNLFSHMKIAG 342


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/438 (33%), Positives = 238/438 (54%), Gaps = 33/438 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+  + +WN++++GY Q   +++   LFR M +  V +PD  T+  +L +C +   +  
Sbjct: 376 ISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNV-QPDRTTLAVILSSCSRLGILDL 434

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +   +  D+++ + L+ MY+KCG +  AR + + M+++D V           
Sbjct: 435 GTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVV----------- 483

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++ +E   D  ++M+ +G+ P   + +S+
Sbjct: 484 --------------------CWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASM 523

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S++  G++IH   VK+ YD+N+YV +A+ID YAK G +  A+  FD    +++
Sbjct: 524 INSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNI 583

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVD+A   FN+
Sbjct: 584 VAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNS 643

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P  EHY C++  L RA R+ E    +  MP K    VW  LL   ++  + E
Sbjct: 644 MESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAE 703

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+    HLF ++P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SWI+  
Sbjct: 704 LGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSWIDHK 763

Query: 421 GGLQSF-VAKDTSGDKSE 437
            G+ +F VA D   D  E
Sbjct: 764 DGVHAFMVADDLQTDGGE 781



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 48/376 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN++IA  ++     E   L+  ML   ++ P   T+ SVL ACG  + +  
Sbjct: 100 MPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLV-PTHFTLASVLSACGAVAALDD 158

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H   ++  +  +L++ NAL+GMY KCG ++ A  L D M+  +EVS++A++ G + 
Sbjct: 159 GRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQ 218

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+ A+ LF  M R                               SGVR + V +SS+
Sbjct: 219 AGSVDDALRLFARMCR-------------------------------SGVRVDPVAVSSV 247

Query: 181 F--------SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
                    S F      + G+ IH   V+  +  + +V  ++ID Y K   +  A +VF
Sbjct: 248 LGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVF 307

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D     S + W  +I+ +   G  +KA+ + N M  +G +P+ VT++ +L++C  +  V 
Sbjct: 308 DSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVL 367

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGAL 349
            A  +F+ +S     +PSV  +  ++    +     +  E   +M    V+P       +
Sbjct: 368 SARAMFDKIS-----RPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVI 422

Query: 350 LYGASISGDVELGKFV 365
           L   S  G ++LG  V
Sbjct: 423 LSSCSRLGILDLGTQV 438



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 5/248 (2%)

Query: 45  VVSVLQACGQSS---DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLDYARALL 100
           +  VLQAC + S           H  V+ + +  D ++ N L+ +Y+  G   D  RA  
Sbjct: 8   LAGVLQACIKRSPKPSRAHARAAHARVLAAGLGADTFLINRLVELYSVSGLPCDALRAF- 66

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
             +   +  SY+A +S     G ++ A  L   M    + +WN VI+ L ++ R    L+
Sbjct: 67  RSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALE 126

Query: 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220
           L   M   G+ P   T++S+ S     + L  G+  HG AVK   D N++V  A++  Y 
Sbjct: 127 LYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYT 186

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           K G +  A R+FD     + + +TA++      G    A+ LF  M  +G++ DPV  ++
Sbjct: 187 KCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSS 246

Query: 281 VLSACAHS 288
           VL +CA +
Sbjct: 247 VLGSCAQA 254


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 244/456 (53%), Gaps = 32/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSWNS+I+GY Q G   E   LF+ M+     + D +T + ++    + +D+ F
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE-QADHITYLMLISLSTRLADLKF 426

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+  I+S I +DL + NALI MYAKCG +  +  + + M   D V           
Sbjct: 427 GKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTV----------- 475

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN VIS  V+       L +  +M+ + V P+  T    
Sbjct: 476 --------------------TWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVT 515

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + +  +  + GKEIH   ++  Y+  + +  A+I+ Y+K G L  + RVF+R   R +
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDV 575

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT +I AY  +G+  KA+  F +M  +GI PD V F A++ AC+HSGLV+K    F  
Sbjct: 576 VTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEK 635

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y I P +EHYAC+V +LSR+++IS+A EF+  MP++P A +W ++L     SGD+E
Sbjct: 636 MKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDME 695

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
             + V   + E+ P++ G  I+ +N Y+   +WD+   +R+ +++  + K PG SWIE  
Sbjct: 696 TAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIG 755

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F + D S  +SE I+  LE L  LM +EGY+
Sbjct: 756 KKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYI 791



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 202/441 (45%), Gaps = 74/441 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V++N+MI GY +    EE   +F E L+    +PD +TV SVL ACG   D+  
Sbjct: 268 MVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ--FKPDILTVTSVLCACGHLRDLSL 325

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
              ++N+++ +   ++  + N LI +YAKCG +  AR + + M  KD VS+++IISGY+ 
Sbjct: 326 AKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +AM LF++M                          ++ E QA     + +T   +
Sbjct: 386 SGDLMEAMKLFKMM--------------------------MIMEEQA-----DHITYLML 414

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            SL +  ++LK GK +H   +K+    ++ V+ A+ID YAK G +  + ++F+       
Sbjct: 415 ISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDT 474

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-------------- 286
           + W  +ISA    GD +  + +  +M  N + PD  TF   L  CA              
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCC 534

Query: 287 ---------------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                                  G ++ ++ +F  MS +  +  +   YA   G+     
Sbjct: 535 LLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYA--YGMYGEGE 592

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYII 382
           +  E+   + K  + P + V+ AL+Y  S SG VE G    + +   ++I+P    +Y  
Sbjct: 593 KALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPM-IEHYAC 651

Query: 383 MANLYSQAGRWDEADRVREQM 403
           + +L S++ +  +A+   + M
Sbjct: 652 VVDLLSRSQKISKAEEFIQAM 672



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 178/357 (49%), Gaps = 37/357 (10%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++  WNS+I  +S+ G++ +    + ++  S V  PD  T  SV++AC    D   G  
Sbjct: 69  KNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKV-SPDKYTFPSVIKACAGLFDAEMGDL 127

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V+  ++E   + DL++ NAL+ MY++ G L  AR + DEM  +D VS++++ISGY  HG+
Sbjct: 128 VYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGY 187

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            E+A++++                                E++ S + P++ T+SS+   
Sbjct: 188 YEEALEIYH-------------------------------ELRNSWIVPDSFTVSSVLPA 216

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           F++   +K G+ +HG+ +K+  +    V   ++  Y K      A+RVFD    R  + +
Sbjct: 217 FANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTY 276

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM-S 302
             +I  Y       ++V +F E L+   +PD +T T+VL AC H   +  A  I+N M  
Sbjct: 277 NTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLR 335

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             + ++ +V++   ++ V ++   +  A +  + M  K +   W +++ G   SGD+
Sbjct: 336 AGFVLESTVKNI--LIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDL 389



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 202/485 (41%), Gaps = 80/485 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNS+I+GYS  G+YEE   ++ E+ NS ++ PD  TV SVL A      +  
Sbjct: 167 MPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIV-PDSFTVSSVLPAFANLLVVKQ 225

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H F ++S +     + N L+ MY K      AR + DEM  +D V+Y+ +I GY+ 
Sbjct: 226 GQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLK 285

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE+++ +F              +  L Q                   +P+ +T++S+
Sbjct: 286 LEMVEESVKMF--------------LENLDQ------------------FKPDILTVTSV 313

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                H  +L   K I+ Y ++  +     V   +ID YAK G +  A+ VF+  + +  
Sbjct: 314 LCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF---------------------- 278
           + W +IIS Y   GD  +A+ LF  M+    Q D +T+                      
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSN 433

Query: 279 -------------TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
                         A++   A  G V  +  IFN+M     +  +    AC V     A 
Sbjct: 434 GIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISAC-VRFGDFAT 492

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV--CDHLFEIEPE-NTGNYII 382
            +   T+      V   A     L   AS++    LGK +  C   F  E E   GN +I
Sbjct: 493 GLQVTTQMRKNKVVPDMATFLVTLPMCASLAAK-RLGKEIHCCLLRFGYESELQIGNALI 551

Query: 383 MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI-----ECSGGLQSFVAKDTSGDKSE 437
              +YS+ G  + + RV E+M    +    G  +      E    L+SFV  + SG   +
Sbjct: 552 --EMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPD 609

Query: 438 QIYLI 442
            +  I
Sbjct: 610 SVVFI 614



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLII 242
            S  SNL   + IH   +    D + + +  +ID Y+       +  VF R    +++ I
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYI 73

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAM 301
           W +II A++ +G   KA+  + ++  + + PD  TF +V+ ACA  GL D +  D+    
Sbjct: 74  WNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACA--GLFDAEMGDLVYKQ 131

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
             + G +  +     +V + SR   +S A +   +MPV+     W +L+ G S  G  E
Sbjct: 132 ILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVS-WNSLISGYSSHGYYE 189


>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 849

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 267/456 (58%), Gaps = 6/456 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS +DI+SWN+++  ++      +   L   + N  +   D VT++S+L+ C     I  
Sbjct: 392 MSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITL-DSVTILSLLKFCTNVQGIGK 450

Query: 61  GMEVHNFVIES---HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE-VSYSAIIS 116
             EVH + +++   H + +  + NAL+  YAKCG+++YA  +   +S++   V+Y++++S
Sbjct: 451 VKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLS 510

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           GY+  G  + A  LF  M    L+TW+ ++    ++      + + RE+QA G+RPN VT
Sbjct: 511 GYVNSGSHDDAQMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVT 570

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I ++  + +  ++L   ++ HGY ++ R   +I +   ++D YAK G L  A  VF    
Sbjct: 571 IMNLLPVCAQLASLHLVRQCHGYIIRGRLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDA 629

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R L+++TA+++ YA HG   +A+ +F+ M+++ I+PD V  T +L+AC H+GL+     
Sbjct: 630 RRDLVMFTAMVAGYAVHGRGKEALMIFSHMIDSNIKPDHVFITTLLTACCHAGLIQDGLQ 689

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           I++++   +G++P++E YAC V +L+R  R+ +A  F+++MPV+P+A +WG LL   +  
Sbjct: 690 IYDSIRAVHGMKPTMEQYACAVDLLARGGRLDDAYSFITQMPVEPNANIWGTLLRACTTY 749

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
             ++LG  V +HL + E ++TGN+++++N+Y+   +W+    +R  MK+  + K  G SW
Sbjct: 750 NRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSW 809

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           +E  G    FV+ D S  + + I+ ++  L   M+E
Sbjct: 810 LEVDGKRDVFVSGDCSHPRRDSIFDLVNALYLQMKE 845



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 187/416 (44%), Gaps = 43/416 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIV 59
           ++ +D+VSWN++IAG+S+     +    F  ML  P   P+  T+ +VL  C     +I 
Sbjct: 184 IADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPT-EPNYATIANVLPVCASMGKNIA 242

Query: 60  F--GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           +  G ++H++V++ S ++  +++CN+L+  Y + G                         
Sbjct: 243 YRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGR------------------------ 278

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAV 175
                  +E+A  LF  M    L +WN VI+G   N+     L L   + Q   V  ++V
Sbjct: 279 -------IEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSV 331

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           TI SI  + +  ++L  GKEIH Y +++ Y   +  V  A+I  YA+ G    A   F  
Sbjct: 332 TILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSL 391

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              + +I W AI+ A+A      + ++L + + N  I  D VT  ++L  C +   + K 
Sbjct: 392 MSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTNVQGIGKV 451

Query: 295 WDI--FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            ++  ++  +G    +   +    ++   ++   +  A +    +  + +   + +LL G
Sbjct: 452 KEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSG 511

Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
              SG  +  + +     E+   +   + +M  +Y+++   +EA  V  +++  G+
Sbjct: 512 YVNSGSHDDAQML---FSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGM 564



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 41/316 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+VSWN +IAGY+    + +   LF  ++    +  D VT++S+L  C Q +D+  
Sbjct: 289 MGSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTC 348

Query: 61  GMEVHNFVI-ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G E+H++++  S++  D  + NALI  YA+ G    A      MS KD +S         
Sbjct: 349 GKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIIS--------- 399

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 WNA++     + +    L+L+  +    +  ++VTI S
Sbjct: 400 ----------------------WNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILS 437

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRF- 235
           +    ++   +   KE+HGY+VK     N     +  A++D YAK G +  A ++F    
Sbjct: 438 LLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLS 497

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           + R+L+ + +++S Y   G    A  LF+EM       D  T++ ++   A S   ++A 
Sbjct: 498 ERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMSTT----DLTTWSLMVRIYAESCFPNEAI 553

Query: 296 DIFNAMSGQYGIQPSV 311
            +F  +  + G++P+ 
Sbjct: 554 GVFREIQAR-GMRPNT 568



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 38/293 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M   D V WN ++ G S     E  +  F+ M  +   +P  VT   +L  C +  D   
Sbjct: 82  MDSVDPVVWNIVLTGLSVSCGRETMR-FFKAMHFADEPKPSSVTFAILLPVCVRLGDSYN 140

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGYM 119
           G  +H+++I++ ++ D  + NAL+ MYAK G +   A    D+++DKD VS         
Sbjct: 141 GKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVS--------- 191

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                 WNA+I+G  +N            M      PN  TI++
Sbjct: 192 ----------------------WNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIAN 229

Query: 180 IFSLFSHFSN---LKGGKEIHGYAVKNRY-DRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           +  + +        + G++IH Y V+  +   +++V  +++  Y + G +  A  +F R 
Sbjct: 230 VLPVCASMGKNIAYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRM 289

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAH 287
             + L+ W  +I+ YA++ +  KA+ LF+ ++  G +  D VT  ++L  CA 
Sbjct: 290 GSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQ 342



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 127/328 (38%), Gaps = 60/328 (18%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARAL 99
           D    + V++AC   S++  G  +H  V +  HI     +  +++ MYAKC  +D  + +
Sbjct: 20  DHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACT-EVSKSVLNMYAKCRRMDDCQKM 78

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
             +M   D V                                WN V++GL  +   E + 
Sbjct: 79  FRQMDSVDPV-------------------------------VWNIVLTGLSVSCGRETMR 107

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
                  A   +P++VT + +  +     +   GK +H Y +K   +++  V  A++  Y
Sbjct: 108 FFKAMHFADEPKPSSVTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMY 167

Query: 220 AKTGFL-HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           AK G++   A   FD    + ++ W AII+ ++ +   + A   F  ML    +P+  T 
Sbjct: 168 AKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATI 227

Query: 279 TAVLSACA--------------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
             VL  CA              HS +V ++W           +Q  V     +V    R 
Sbjct: 228 ANVLPVCASMGKNIAYRSGRQIHSYVVQRSW-----------LQTHVFVCNSLVSFYLRV 276

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYG 352
            RI EA    ++M  K     W  ++ G
Sbjct: 277 GRIEEAASLFTRMGSKDLVS-WNVVIAG 303


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 246/436 (56%), Gaps = 2/436 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + ++I G+   G Y +   L+  ML+  +L PD   + S+L+ACG    +  G EV
Sbjct: 111 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSIL-PDNYLMASILKACGSQLALREGREV 169

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+  ++  +  +  +   ++ +Y KCG L  AR + +EM + D V+ + +IS Y   G V
Sbjct: 170 HSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLV 228

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E+A  +F  ++R     W A+I G V+N      L+  R MQ   VRPN  TI  + S  
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSAC 288

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S    L+ G+ +H Y  K   + N++V  A+I+ Y++ G +  AQ VFD  K R +I + 
Sbjct: 289 SQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYN 348

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS  + +G + +A+ LF  M+   ++P  VTF  VL+AC+H GLVD  + IF++M+  
Sbjct: 349 TMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRD 408

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           YG++P +EHY CMV +L R  R+ EA + +  M + P   + G LL    +  ++ELG+ 
Sbjct: 409 YGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQ 468

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L +    ++G Y++++++Y+ +G+W EA +VR +MKE+G+ K PG S IE +  + 
Sbjct: 469 VAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIH 528

Query: 425 SFVAKDTSGDKSEQIY 440
            F+  D    + E+IY
Sbjct: 529 EFLLGDLRHPRKERIY 544



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 169/409 (41%), Gaps = 59/409 (14%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D   ++S+LQ   +S  I   + +H  +I +    D ++   L+   +KC ++DYA  + 
Sbjct: 48  DQKQIISLLQ---RSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 104

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
               + +   Y+A+I G++  G    A+ L+  M    +   N +++ +++    +  L 
Sbjct: 105 QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 164

Query: 161 LVREMQAS----GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             RE+ +     G+  N +    I  L+     L   + +           ++  +T +I
Sbjct: 165 EGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF-----EEMPEDVVASTVMI 219

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
            +Y+  G +  A  VF R + +  + WTA+I  +  + + ++A+  F  M    ++P+  
Sbjct: 220 SSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEF 279

Query: 277 TFTAVLSACA-----------HS------------------------GLVDKAWDIFNAM 301
           T   VLSAC+           HS                        G +D+A  +F+ M
Sbjct: 280 TIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEM 339

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGD 358
             +      V  Y  M+  LS   +  +A E    M    ++P+   +  +L   S  G 
Sbjct: 340 KDR-----DVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGL 394

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           V+ G  +   +   + +EP+   +Y  M +L  + GR +EA  +   MK
Sbjct: 395 VDFGFKIFHSMTRDYGVEPQ-IEHYGCMVDLLGRVGRLEEAYDLIRTMK 442



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++++N+MI+G S  G   +   LFR M+    LRP  VT V VL AC     + F
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRR-LRPTNVTFVGVLNACSHGGLVDF 397

Query: 61  GMEV-HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G ++ H+   +  ++  +     ++ +  + G L+ A  L+  M    D +    ++S  
Sbjct: 398 GFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 457

Query: 119 MVHGFVEKAMDLFQVMKRPG 138
            +H  +E    + +V++  G
Sbjct: 458 KMHKNLELGEQVAKVLEDRG 477


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 239/431 (55%), Gaps = 32/431 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS   + SWN++++GYSQ   ++E   LFREM    V  PD  T+  +L +      +  
Sbjct: 379 MSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSV-HPDRTTLAIILSSLAGMMLLEG 437

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH    ++  + D+++ + LIGMY+KCG ++ A+ + D +++ D V           
Sbjct: 438 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIV----------- 486

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++GL  N+  +      ++M+  G+ P+  + +++
Sbjct: 487 --------------------CWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATV 526

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  S+L  G+++H    +  Y  + +V +A+ID Y+K G +  A+ VFD   G++ 
Sbjct: 527 LSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNT 586

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   +AV L+ +M+ +G +PD +TF AVL+AC+HSGLVD    IFN+
Sbjct: 587 VTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNS 646

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++G++P V+HY C++  L RA R+ EA   + KMP K    +W  LL    +  DV 
Sbjct: 647 MQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVS 706

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LF ++P+N+  Y+++AN+YS  GRWD+A  VRE M  + + K PG SWIE  
Sbjct: 707 LARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHK 766

Query: 421 GGLQSFVAKDT 431
            G+Q+F+  D 
Sbjct: 767 NGMQAFMVDDN 777



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 201/450 (44%), Gaps = 86/450 (19%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ----------SS 56
           VS+ +M+ G +      E   LFR ML + +   D V++ SVL  C +          S+
Sbjct: 204 VSFTAMMGGLADSDQVNEAFRLFRLMLRNRI-HVDSVSLSSVLGVCSRGGCGEFGLHDSN 262

Query: 57  DI----VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
           D+    V G +VH   I+   + DL + N+L+ MYAK G++D A  +   M +   VS++
Sbjct: 263 DVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWN 322

Query: 113 AIISGY----------------MVHGF-------------------VEKAMDLFQVMKRP 137
            +I+GY                  HGF                   +E    +F  M  P
Sbjct: 323 VMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSP 382

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            LS+WN ++SG  QN  H+  + L REMQ   V P+  T++ I S  +    L+GG+++H
Sbjct: 383 SLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVH 442

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
             + K  +  +IY+A+ +I  Y+K G +  A+R+FDR     ++ W ++++  + +    
Sbjct: 443 AVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDK 502

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           +A + F +M   G+ P   ++  VLS CA                               
Sbjct: 503 EAFTFFKKMREKGMFPSQFSYATVLSCCAK------------------------------ 532

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           +  LS+ R++      +++      A V  AL+   S  GDV+  ++V D +     +NT
Sbjct: 533 LSSLSQGRQVHSQ---IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML---GKNT 586

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESG 407
             +  M + Y+Q G  DEA  + E M  SG
Sbjct: 587 VTWNEMIHGYAQNGCGDEAVLLYEDMIGSG 616



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 199/425 (46%), Gaps = 59/425 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+IVSWN++I+  ++ GF ++   ++  M     + P   T+ SVL ACG   D+  
Sbjct: 97  MPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFV-PTHFTLASVLSACGALVDVEC 155

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H   I+  +  ++++ NAL+GMYAKC  +  A     ++ + +EVS++A++ G   
Sbjct: 156 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 215

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              V +A  LF++M R                NR               +  ++V++SS+
Sbjct: 216 SDQVNEAFRLFRLMLR----------------NR---------------IHVDSVSLSSV 244

Query: 181 FSLFSH--------------FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
             + S                S+   G+++H   +K+ ++ ++++  +++D YAK G + 
Sbjct: 245 LGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMD 304

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ +F      S++ W  +I+ Y     +SKA+     M  +G +PD +T+  +L AC 
Sbjct: 305 SAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACI 364

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSA 343
            SG ++    +F+ MS      PS+  +  ++   S+     EA +   +M    V P  
Sbjct: 365 KSGDIEAGRQMFDGMS-----SPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDR 419

Query: 344 KVWGALLYGASISGDVEL-GKFVCDHLFEIEPENTGNYII--MANLYSQAGRWDEADRVR 400
                +L  +S++G + L G      + +     T  Y+   +  +YS+ G+ + A R+ 
Sbjct: 420 TTLAIIL--SSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIF 477

Query: 401 EQMKE 405
           +++ E
Sbjct: 478 DRIAE 482



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 122/245 (49%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           + S+LQ C      + G  +H  ++ S +  D ++ N LI  YAKC ++D +R L D+M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +D  +++AI+  Y     +E A  LF  M    + +WN +IS L +N   +  L +   
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   G  P   T++S+ S      +++ G+  HG ++K   D NIYV  A++  YAK   
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A + F      + + +TA++   A     ++A  LF  ML N I  D V+ ++VL  
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 247

Query: 285 CAHSG 289
           C+  G
Sbjct: 248 CSRGG 252


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 238/436 (54%), Gaps = 32/436 (7%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           + + SWN++I GY+Q            +M NS +L PD  TV S+L AC +   +  G E
Sbjct: 443 KTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLL-PDNFTVCSLLSACSKLKSLRLGKE 501

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH F+I + ++ DL++  +++ +Y  CG L   + L D M D   VS             
Sbjct: 502 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVS------------- 548

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN VI+G +QN   E  L L R+M   G++P  +++ ++F  
Sbjct: 549 ------------------WNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGA 590

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   +L+ G+E H YA+K+  + N ++A +IID YAK G +  + +VF+  K +S   W
Sbjct: 591 CSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASW 650

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I  Y  HG A +A+ LF EM   G  PD +TF  VL+AC HSGL+ +     + M  
Sbjct: 651 NAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKS 710

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            +G++P+++HYAC++ +L RA ++  A    ++M  +P   +W +LL    I  ++E+G+
Sbjct: 711 SFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGE 770

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            V   LF +EPE   NY++++NLY+  G+WD+  +VR++MKE  L K  G SWIE +G +
Sbjct: 771 KVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKV 830

Query: 424 QSFVAKDTSGDKSEQI 439
            SFV  +   D  E+I
Sbjct: 831 FSFVVGERFLDGFEEI 846



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 199/446 (44%), Gaps = 79/446 (17%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +++VSWN+M+ G+S  G       L R+ML  S  ++ D VT+++ +  C   S +  
Sbjct: 338 NNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPS 397

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+H + ++     D  + NA +  YAKCGSL YA+ +                     
Sbjct: 398 LKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVF-------------------- 437

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   K            L++WNA+I G  Q++     LD   +M+ SG+ P+  T+ S+
Sbjct: 438 HGIRSKT-----------LNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSL 486

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S   +L+ GKE+HG+ ++N  +R+++V  +++  Y   G L   Q +FD  +  SL
Sbjct: 487 LSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSL 546

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC--------------- 285
           + W  +I+ +  +G   +A+ LF +M+  GIQP  ++   V  AC               
Sbjct: 547 VSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAY 606

Query: 286 --------------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV---GVLS 322
                               A +G + ++  +FN +      + S   +  M+   G+  
Sbjct: 607 ALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLK-----EKSAASWNAMIMGYGMHG 661

Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
           RA+   +  E + +    P    +  +L   + SG +  G    D +   F ++P N  +
Sbjct: 662 RAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKP-NLKH 720

Query: 380 YIIMANLYSQAGRWDEADRVREQMKE 405
           Y  + ++  +AG+ D A RV  +M E
Sbjct: 721 YACVIDMLGRAGQLDNALRVAAEMSE 746



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 157/346 (45%), Gaps = 60/346 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++  WN++I+ YS+   Y E   +F +M++   L PD  T   V++AC   SD+  
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGI 205

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS---- 116
           G+ VH  V+++ +  DL++ NAL+  Y   G +  A  L D M +++ VS++++I     
Sbjct: 206 GLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSD 265

Query: 117 -----------------------------GYMVHGFVEKA------------MDL----- 130
                                        G  VHG+  K             MD+     
Sbjct: 266 NGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWG 325

Query: 131 --------FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISSI 180
                   F++     + +WN ++ G           DL+R+M A    V+ + VTI + 
Sbjct: 326 CIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNA 385

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +    S L   KE+H Y++K  +  +  +A A + +YAK G L  AQRVF   + ++L
Sbjct: 386 VPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTL 445

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             W A+I  YA   D   ++    +M N+G+ PD  T  ++LSAC+
Sbjct: 446 NSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACS 491



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 45/241 (18%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           +LQA G+  DI  G ++H+ V  S  ++ D  +C  +I MYA CGS D +R+  D +  K
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSK 149

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL-VREM 165
           +                      LFQ         WNAVIS   +N  +  VL++ ++ +
Sbjct: 150 N----------------------LFQ---------WNAVISSYSRNELYHEVLEMFIKMI 178

Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
             + + P+  T   +    +  S++  G  +HG  VK     +++V  A++  Y   GF+
Sbjct: 179 SKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFV 238

Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
             A ++FD    R+L+ W ++I  ++ +GD            +    PD  T   VL  C
Sbjct: 239 SDALKLFDIMPERNLVSWNSMIRVFSDNGD------------DGAFMPDVATVVTVLPVC 286

Query: 286 A 286
           A
Sbjct: 287 A 287



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 102/178 (57%), Gaps = 6/178 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M    +VSWN++I G+ Q GF E    LFR+M+   + +P G+++++V  AC     +  
Sbjct: 541 MEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGI-QPCGISMMTVFGACSLLPSLRL 599

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E H + ++  ++ + +I  ++I MYAK G++  +  + + + +K   S++A+I GY +
Sbjct: 600 GREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGM 659

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD----LVREMQAS-GVRPN 173
           HG  ++A+ LF+ M+R G +  +    G++    H  +L      + +M++S G++PN
Sbjct: 660 HGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPN 717


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 253/470 (53%), Gaps = 31/470 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSW++MI GY   GF++E   LF +M    ++  +  T+  + +ACG    +  
Sbjct: 225 MPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSE 284

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY-- 118
           GM++H  V     + D  + N++I MY+  G  D A  +   +SDKD V+++++ISGY  
Sbjct: 285 GMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIH 344

Query: 119 ------------------------MVHGF-----VEKAMDLFQVMKRPGLSTWNAVISGL 149
                                   M+ GF     VE A++LF ++       W A+ISG 
Sbjct: 345 NNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGF 404

Query: 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
           V NN +E  L     M   G +PN +TISS+ +  +    L  G +IH   +K   + N+
Sbjct: 405 VNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNL 464

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269
            +  ++I  Y+K+G +  A R+F      ++I + +IIS +A +G   +A+ ++ +M + 
Sbjct: 465 SIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSE 524

Query: 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329
           G +P+ VTF AVLSAC H+GLVD+ W+IFN M   YGI+P  +HYACMV +L RA  + E
Sbjct: 525 GHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDE 584

Query: 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389
           A + +  MP KP + VWGA+L  +     ++L K     + ++EP+N   Y++++N+YS 
Sbjct: 585 AIDLIRSMPFKPHSGVWGAILGASKTHLRLDLAKLAAQRITDLEPKNATPYVVLSNMYSA 644

Query: 390 AGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQI 439
           AG+  + D V+      G+ K PG SWI     +  F+A D S    E+I
Sbjct: 645 AGKKIDGDLVKMAKNLKGIKKSPGCSWITMKNKVHLFLAGDQSHGSIEEI 694



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 145/330 (43%), Gaps = 30/330 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC-------- 52
           M  ++  SW +M+  ++Q G  +  + LF EM     +  + +    +   C        
Sbjct: 67  MPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYIRNGCNVGKAYEL 126

Query: 53  ----GQSSDIVFGMEVHNFVIESHIKM-------------DLWICNALIGMYAKCGSLDY 95
                + + + +   +  FV      M             D    NALI  Y K G ++ 
Sbjct: 127 FSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYEFRDPACSNALINGYLKMGEVNE 186

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           A  + + M ++D VS+SA++ G    G V  A DLF  M    + +W+A+I G +     
Sbjct: 187 ALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFF 246

Query: 156 EAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           +    L  +M+  G V  N+ T++ +F    +   +  G +IHG   +  ++ +  ++ +
Sbjct: 247 QEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNS 306

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I  Y+  G    A +VF     + ++ W ++IS Y  + +   A  +F  M       D
Sbjct: 307 VITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRM----PVKD 362

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +++TA+++  + SG V+ A ++FN +  +
Sbjct: 363 VISWTAMIAGFSKSGRVENAIELFNMLPAK 392



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV-----------HGFVEKAMDLFQVM 134
           ++ +   L+  ++ L++  + D ++     S +++           +G V++A  +F  M
Sbjct: 8   LHKRITKLNLFQSKLNQSHNNDSINSGGKGSKFLIQCNTQIAENGRNGNVKEAESIFHKM 67

Query: 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-LKGG 193
                ++W A+++   QN + +    L  EM      P   T+S+   + ++  N    G
Sbjct: 68  PIKNTASWTAMLTAFAQNGQIQNARRLFDEM------PQRTTVSNNAMISAYIRNGCNVG 121

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSLIIWTAIISAYA 251
           K    ++V    +RN+    A+I  + K G  H A++++    ++ R      A+I+ Y 
Sbjct: 122 KAYELFSV--LAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYEFRDPACSNALINGYL 179

Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
             G+ ++A+ +F  M     + D V+++A++      G V  A D+F+ M
Sbjct: 180 KMGEVNEALRIFENMG----ERDVVSWSAMVDGLCRDGRVAAARDLFDRM 225



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
            + G +  A+ +F +   ++   WTA+++A+A +G    A  LF+EM     Q   V+  
Sbjct: 52  GRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEM----PQRTTVSNN 107

Query: 280 AVLSACAHSGL-VDKAWDIFNAMSGQYGIQPSVEHYACMV------GVLSRARRISEATE 332
           A++SA   +G  V KA+++F+ ++     + ++  YA M+      G    A ++   T 
Sbjct: 108 AMISAYIRNGCNVGKAYELFSVLA-----ERNLVSYAAMIMGFVKAGKFHMAEKLYRETP 162

Query: 333 FVSKMPVKPSAKVWGALLYG 352
           +  + P   +A + G L  G
Sbjct: 163 YEFRDPACSNALINGYLKMG 182


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 242/411 (58%), Gaps = 4/411 (0%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           +PD  T   VL+   + SD+ FG +VH   +       + +   LI MY+ CG L  AR 
Sbjct: 113 KPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARK 172

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK---RPGLSTWNAVISGLVQNNRH 155
           + DEM  +D   ++A+++GY   G +++A  L ++M    R  +S W  VISG  ++ R 
Sbjct: 173 VFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVS-WTCVISGYARSGRA 231

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
              +++ + M    V P+ VT+ ++ S  +   +L+ G+ I  Y      +R + +  A+
Sbjct: 232 SEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAV 291

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           ID YAK+G +  A  VF+    R+++ WT II+  A HG  ++A+ +F+ M+  G++P+ 
Sbjct: 292 IDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPND 351

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           VTF A+LSAC+H G VD     FN+M  +YGI P++EHY CM+ +L RA ++ EA E + 
Sbjct: 352 VTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIK 411

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
            MP + +A +WG+LL  +++  D+++G+     L ++EP N+GNY+++ANLYS  GRWDE
Sbjct: 412 SMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDE 471

Query: 396 ADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           +  +R+ MK  G+ K+ G S IE    +  F++ D S  + E+I+ +L+ +
Sbjct: 472 SRMMRKMMKGIGVKKLAGESSIEVENRVYKFISGDLSHPQVEKIHELLQEM 522



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 83/386 (21%)

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV---QNNRHEAVLDL 161
           ++D ++ +  I      G +  A  +F     P     N +I  L    + N H   + +
Sbjct: 44  NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITV 103

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
            R+  A   +P+  T   +  +    S++  G+++HG AV   +D +++V T +I  Y+ 
Sbjct: 104 YRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSS 163

Query: 222 TGFLHGAQRVFDRFKGRSL---------------------------------IIWTAIIS 248
            G L  A++VFD  + R +                                 + WT +IS
Sbjct: 164 CGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVIS 223

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC----------------------- 285
            YA  G AS+A+ +F  ML   + PD VT  AVLSAC                       
Sbjct: 224 GYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR 283

Query: 286 ------------AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
                       A SG + KA ++F +++     + +V  +  ++  L+     +EA   
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALEVFESVN-----ERNVVTWTTIITGLATHGHGAEALVM 338

Query: 334 VSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLY 387
             +M    VKP+   + A+L   S  G V+LG    + +   + I P N  +Y  M +L 
Sbjct: 339 FDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINP-NIEHYGCMIDLL 397

Query: 388 SQAGRWDEADRVREQMKESGLAKIPG 413
            +AG+  EA+ V + M     A I G
Sbjct: 398 GRAGKLREAEEVIKSMPFESNAAIWG 423



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 69/291 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKAL-------------------------------- 28
           M  RD+  WN+++AGY + G  +E + L                                
Sbjct: 177 MRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIE 236

Query: 29  -FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
            F+ ML   V  PD VT+++VL AC     +  G  + ++V    +   + + NA+I MY
Sbjct: 237 VFQRMLMENV-DPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMY 295

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           AK G++  A  + + +++++ V+++ II+G   HG   +A+ +F  M +           
Sbjct: 296 AKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVK----------- 344

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-- 205
                               +GV+PN VT  +I S  SH   +  G      +++++Y  
Sbjct: 345 --------------------AGVKPNDVTFIAILSACSHVGWVDLGNRFFN-SMRSKYGI 383

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD 255
           + NI     +ID   + G L  A+ V       S   IW ++++A   H D
Sbjct: 384 NPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHD 434


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 271/502 (53%), Gaps = 47/502 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +++ VSW  M+ G+ Q G  ++   L+ EM+       D +   S++    +   +  
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK----DNIARTSMIHGLCKEGRVDE 190

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+ + + E  +    W    ++  Y +   +D AR + D M +K EVS+++++ GY+ 
Sbjct: 191 AREIFDEMSERSVIT--W--TTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQ 246

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN--------------NRHEA--------- 157
           +G +E A +LF+VM    +   NA+ISGL Q                R++A         
Sbjct: 247 NGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIH 306

Query: 158 --------VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
                    LDL   MQ  GVRP   T+ SI S+ +  ++L  GK++H   V+ ++D ++
Sbjct: 307 ERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDV 366

Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LN 268
           YVA+ ++  Y K G L  ++ +FDRF  + +I+W +IIS YA+HG   +A+ +F EM L+
Sbjct: 367 YVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLS 426

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
              +P+ VTF A LSAC+++G+V++   I+ +M   +G++P   HYACMV +L RA R +
Sbjct: 427 GSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFN 486

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
           EA E +  M V+P A VWG+LL        +++ +F    L EIEPEN+G YI+++N+Y+
Sbjct: 487 EAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYA 546

Query: 389 QAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKD-TSGDKSEQIYLILERLL 447
             GRW +   +R+ MK   + K PG SW E    + +F      S  + E I  IL+ L 
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELD 606

Query: 448 GLMREEGY-----VLLDEVEEE 464
           GL+RE GY       L +V+EE
Sbjct: 607 GLLREAGYNPDCSYALHDVDEE 628



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 190/459 (41%), Gaps = 82/459 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           + I SWNSM+AGY       + + LF EM +  ++  +G     ++    ++ +I    +
Sbjct: 46  KSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNG-----LVSGYMKNGEIDEARK 100

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           V + + E ++    W   AL+  Y   G +D A +L  +M +K++VS++ ++ G++  G 
Sbjct: 101 VFDLMPERNVVS--W--TALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGR 156

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS----- 178
           ++ A  L++++         ++I GL +  R +   ++  EM    V      ++     
Sbjct: 157 IDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQN 216

Query: 179 -------SIFSLFSHFSNLKGGKEIHGYAVKNRYD-----------RNIYVATAIIDTYA 220
                   IF +    + +     + GY    R +           + +    A+I    
Sbjct: 217 NRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLG 276

Query: 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280
           + G +  A+RVFD  K R+   W  +I  +  +G   +A+ LF  M   G++P   T  +
Sbjct: 277 QKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336

Query: 281 VLSACA-----------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-- 327
           +LS CA           H+ LV   +D+         +   +       G L +++ I  
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDV------DVYVASVLMTMYIKCGELVKSKLIFD 390

Query: 328 -----------------------SEATEFVSKMPV----KPSAKVWGALLYGASISGDVE 360
                                   EA +   +MP+    KP+   + A L   S +G VE
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450

Query: 361 LGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEA 396
            G  + + +   F ++P  T +Y  M ++  +AGR++EA
Sbjct: 451 EGLKIYESMESVFGVKP-ITAHYACMVDMLGRAGRFNEA 488



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
            A   I   ++ G +H A+++FD    +S+  W ++++ Y A+     A  LF+EM +  
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78

Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
           I    +++  ++S    +G +D+A  +F+ M      + +V  +  +V       ++  A
Sbjct: 79  I----ISWNGLVSGYMKNGEIDEARKVFDLMP-----ERNVVSWTALVKGYVHNGKVDVA 129

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYSQ 389
                KMP K     W  +L G    G ++     C  L+E+ P+        M +   +
Sbjct: 130 ESLFWKMPEKNKVS-WTVMLIGFLQDGRIDDA---C-KLYEMIPDKDNIARTSMIHGLCK 184

Query: 390 AGRWDEADRVREQMKESGL 408
            GR DEA  + ++M E  +
Sbjct: 185 EGRVDEAREIFDEMSERSV 203


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 245/456 (53%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R +VSW S+I+GY Q G   E   +F+EM    V +PD + +VSV+ A     D+  
Sbjct: 146 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV-KPDWIALVSVMTAYTNVEDLGQ 204

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +  ++ +  I  +L  MYAK                               
Sbjct: 205 GKSIHGLVTKLGLEFEPDIVISLTTMYAK------------------------------- 233

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A   F  M++P L  WNA+ISG   N   E  + L REM    +R +++T+ S 
Sbjct: 234 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 293

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+  + + GY  K+ Y  + +V T +ID YAK G ++ A+ VFDR   + +
Sbjct: 294 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 353

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+ +I  Y  HG   +A+ L+NEM   G+ P+  TF  +L+AC +SGLV + W++F+ 
Sbjct: 354 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 413

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+P  +HY+C+V +L RA  +++A +F+  MP+KP   VWGALL    I   V 
Sbjct: 414 MP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 472

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LF ++P NTG+Y+ ++NLY+ A  W     VR  M + GL K  G S IE +
Sbjct: 473 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G L++F   D S  KS++I+  L+RL   ++  GYV
Sbjct: 533 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYV 568



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 154/294 (52%), Gaps = 32/294 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+ DI+ WN++I GY+Q    +    ++ +M  S V  P+  T + VL+ACG +S    
Sbjct: 45  VSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQV-HPNCFTFLYVLKACGGTSVEGI 103

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +     ++++ N+L+ MYAK G + YAR + D++ D+  VS+++IISGY+ 
Sbjct: 104 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 163

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+++F                               +EM+   V+P+ + + S+
Sbjct: 164 NGDPMEALNVF-------------------------------KEMRQCNVKPDWIALVSV 192

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +++  +L  GK IHG   K   +    +  ++   YAK G +  A+  F+R +  +L
Sbjct: 193 MTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNL 252

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
           I+W A+IS YA +G   +A+ LF EM+   I+ D +T  + + A A  G ++ A
Sbjct: 253 ILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA 306



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 2/243 (0%)

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I+  +  G V  A   F+ +  P +  WNA+I G  Q N  +A + +  +MQ S V PN 
Sbjct: 26  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNC 85

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T   +       S    GK+IHG   K  +  N++V  +++  YAK G +  A+ VFD+
Sbjct: 86  FTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDK 145

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R+++ WT+IIS Y  +GD  +A+++F EM    ++PD +   +V++A  +   + + 
Sbjct: 146 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 205

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             I + +  + G++   +    +  + ++   +  A  F ++M  KP+  +W A++ G +
Sbjct: 206 KSI-HGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYA 263

Query: 355 ISG 357
            +G
Sbjct: 264 NNG 266


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 258/473 (54%), Gaps = 40/473 (8%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  WN++I GY++ G      +L+REM  S ++ PD  T   +++A    +D+  G  +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+ VI S     +++ N+L+ +YA CG +  A  + D+M +KD                 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----------------- 186

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
                         L  WN+VI+G  +N + E  L L  EM + G++P+  TI S+ S  
Sbjct: 187 --------------LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  GK +H Y +K    RN++ +  ++D YA+ G +  A+ +FD    ++ + WT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 245 AIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           ++I   A +G   +A+ LF  M +  G+ P  +TF  +L AC+H G+V + ++ F  M  
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
           +Y I+P +EH+ CMV +L+RA ++ +A E++  MP++P+  +W  LL   ++ GD +L +
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
           F    + ++EP ++G+Y++++N+Y+   RW +  ++R+QM   G+ K+PG S +E    +
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESAYV 468
             F+  D S  +S+ IY  L+ + G +R EGYV         ++E E+E+A V
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVV 525



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 41/265 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D+V+WNS+I G+++ G  EE  AL+ EM NS  ++PDG T+VS+L AC +   +  
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTL 240

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH ++I+  +  +L   N L+ +YA+CG ++ A+ L DEM DK+ VS++++I G  V
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF ++A++LF+ M+                                 G+ P  +T   I
Sbjct: 301 NGFGKEAIELFKYME------------------------------STEGLLPCEITFVGI 330

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
               SH   +K G E        Y ++ R +        ++D  A+ G +  A       
Sbjct: 331 LYACSHCGMVKEGFEYFRRMREEYKIEPRIEH----FGCMVDLLARAGQVKKAYEYIKSM 386

Query: 236 KGR-SLIIWTAIISAYAAHGDASKA 259
             + +++IW  ++ A   HGD+  A
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLA 411


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 239/431 (55%), Gaps = 32/431 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS   + SWN++++GYSQ   ++E   LFREM    V  PD  T+  +L +      +  
Sbjct: 350 MSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSV-HPDRTTLAIILSSLAGMMLLEG 408

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH    ++  + D+++ + LIGMY+KCG ++ A+ + D +++ D V           
Sbjct: 409 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIV----------- 457

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++GL  N+  +      ++M+  G+ P+  + +++
Sbjct: 458 --------------------CWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATV 497

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +  S+L  G+++H    +  Y  + +V +A+ID Y+K G +  A+ VFD   G++ 
Sbjct: 498 LSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNT 557

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   +AV L+ +M+ +G +PD +TF AVL+AC+HSGLVD    IFN+
Sbjct: 558 VTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNS 617

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++G++P V+HY C++  L RA R+ EA   + KMP K    +W  LL    +  DV 
Sbjct: 618 MQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVS 677

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LF ++P+N+  Y+++AN+YS  GRWD+A  VRE M  + + K PG SWIE  
Sbjct: 678 LARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHK 737

Query: 421 GGLQSFVAKDT 431
            G+Q+F+  D 
Sbjct: 738 NGMQAFMVDDN 748



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 201/450 (44%), Gaps = 86/450 (19%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ----------SS 56
           VS+ +M+ G +      E   LFR ML + +   D V++ SVL  C +          S+
Sbjct: 175 VSFTAMMGGLADSDQVNEAFRLFRLMLRNRI-HVDSVSLSSVLGVCSRGGCGEFGLHDSN 233

Query: 57  DI----VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
           D+    V G +VH   I+   + DL + N+L+ MYAK G++D A  +   M +   VS++
Sbjct: 234 DVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWN 293

Query: 113 AIISGY----------------MVHGF-------------------VEKAMDLFQVMKRP 137
            +I+GY                  HGF                   +E    +F  M  P
Sbjct: 294 VMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSP 353

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            LS+WN ++SG  QN  H+  + L REMQ   V P+  T++ I S  +    L+GG+++H
Sbjct: 354 SLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVH 413

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
             + K  +  +IY+A+ +I  Y+K G +  A+R+FDR     ++ W ++++  + +    
Sbjct: 414 AVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDK 473

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           +A + F +M   G+ P   ++  VLS CA                               
Sbjct: 474 EAFTFFKKMREKGMFPSQFSYATVLSCCAK------------------------------ 503

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           +  LS+ R++      +++      A V  AL+   S  GDV+  ++V D +     +NT
Sbjct: 504 LSSLSQGRQVHSQ---IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML---GKNT 557

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESG 407
             +  M + Y+Q G  DEA  + E M  SG
Sbjct: 558 VTWNEMIHGYAQNGCGDEAVLLYEDMIGSG 587



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 197/428 (46%), Gaps = 63/428 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQ---ACGQSSD 57
           M KRDI +WN+++  Y +    E+   LF EM    ++  +  T++S L    ACG   D
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWN--TLISALTRNGACGALVD 123

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +  G   H   I+  +  ++++ NAL+GMYAKC  +  A     ++ + +EVS++A++ G
Sbjct: 124 VECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGG 183

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                 V +A  LF++M R                NR               +  ++V++
Sbjct: 184 LADSDQVNEAFRLFRLMLR----------------NR---------------IHVDSVSL 212

Query: 178 SSIFSLFSH--------------FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
           SS+  + S                S+   G+++H   +K+ ++ ++++  +++D YAK G
Sbjct: 213 SSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNG 272

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +  A+ +F      S++ W  +I+ Y     +SKA+     M  +G +PD +T+  +L 
Sbjct: 273 NMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV 332

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVK 340
           AC  SG ++    +F+ MS      PS+  +  ++   S+     EA +   +M    V 
Sbjct: 333 ACIKSGDIEAGRQMFDGMS-----SPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVH 387

Query: 341 PSAKVWGALLYGASISGDVEL-GKFVCDHLFEIEPENTGNYII--MANLYSQAGRWDEAD 397
           P       +L  +S++G + L G      + +     T  Y+   +  +YS+ G+ + A 
Sbjct: 388 PDRTTLAIIL--SSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAK 445

Query: 398 RVREQMKE 405
           R+ +++ E
Sbjct: 446 RIFDRIAE 453



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 29/245 (11%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           + S+LQ C      + G  +H  ++ S +  D ++ N LI  YAKC ++D +R L D+M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
            +D  +++AI+  Y     +E A  LF  M    + +WN +IS L +N    A++D    
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVD---- 123

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
                                    ++ G+  HG ++K   D NIYV  A++  YAK   
Sbjct: 124 -------------------------VECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 158

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A + F      + + +TA++   A     ++A  LF  ML N I  D V+ ++VL  
Sbjct: 159 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 218

Query: 285 CAHSG 289
           C+  G
Sbjct: 219 CSRGG 223



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           GK IH + +++R   + +++  +I+ YAK   +  ++R+FD+   R +  W AI+ AY  
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-----FNAMSGQYGI 307
             +   A  LF EM    I    V++  ++SA   +G      D+      + +S + G+
Sbjct: 84  ASELEDAHVLFAEMPERNI----VSWNTLISALTRNGACGALVDVECGRRCHGISIKIGL 139

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             ++     ++G+ ++ R I +A +    +P +P+   + A++ G + S  V
Sbjct: 140 DNNIYVGNALLGMYAKCRCIGDAIQAFGDVP-EPNEVSFTAMMGGLADSDQV 190


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 257/451 (56%), Gaps = 11/451 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D VSW +MI GY + G  +E + ++ +M   P    D     +++    Q+  I    +
Sbjct: 295 KDCVSWTTMINGYVRVGKLDEAREVYNQM---PY--KDVAAKTALMSGLIQNGRIDEASQ 349

Query: 64  VHNFVIESHIKMDLWIC-NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           V      S +     IC N++I  Y + G +  A  L  +M  K+ VS++ +ISGY   G
Sbjct: 350 VF-----SQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAG 404

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            +++A ++F+ M    + +WN++I+G +QN  +   L  +  M   G +P+  T +   S
Sbjct: 405 EMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLS 464

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++ + L+ GK++H   +K+ Y  +++V+ A+I  YAK G +  A++VF   +G  LI 
Sbjct: 465 SCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLIS 524

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++IS YA +G A++A   F +M + G  PD VTF  +LSAC+H+GL ++  D+F  M 
Sbjct: 525 WNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMI 584

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             + I+P  EHY+C+V +L R  R+ EA   V  M VK +A +WG+LL    +  ++ELG
Sbjct: 585 EGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELG 644

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K     L E+EP N  NYI ++N++++AGRW++ +R+R  M+E    K+PG SWIE    
Sbjct: 645 KIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQNQ 704

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           +Q+FV+ D    ++E I +IL  L   MR++
Sbjct: 705 IQNFVSDDPGKLRTESIKIILNTLSAHMRDK 735



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 174/366 (47%), Gaps = 38/366 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+R++VSWN+MIAGY      EE   LF  M        D  +   ++    +   +  
Sbjct: 74  MSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAER-----DNFSWALMITCYTRKGMLEK 128

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             E+   V +   K+D    NA+I  YAK G  D A  + ++M  KD VSY+++++GY  
Sbjct: 129 ARELFELVPD---KLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQ 185

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +  AM  F+ M    + +WN +++G V N    +  +L  ++      PNAV+  ++
Sbjct: 186 NGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIP----DPNAVSWVTM 241

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR--YDR----NIYVATAIIDTYAKTGFLHGAQRVFDR 234
              F+           HG  V+ R  +DR    N+    A+I  Y +   +  A ++F  
Sbjct: 242 LCGFAR----------HGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKE 291

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              +  + WT +I+ Y   G   +A  ++N+M       D    TA++S    +G +D+A
Sbjct: 292 TPYKDCVSWTTMINGYVRVGKLDEAREVYNQM----PYKDVAAKTALMSGLIQNGRIDEA 347

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F+ ++ +  I      +  M+    ++ R+SEA     +MPVK +A  W  ++ G +
Sbjct: 348 SQVFSQLNKRDAI-----CWNSMIAGYCQSGRMSEALNLFRQMPVK-NAVSWNTMISGYA 401

Query: 355 ISGDVE 360
            +G+++
Sbjct: 402 QAGEMD 407



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N  I    K G +D A+ +   +  K+  +Y+++++ +  +G V  A  LF  M +  L 
Sbjct: 21  NKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLV 80

Query: 141 TWNAVISGLVQNNRHE---AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
           +WN +I+G + NN  E    + DL+ E      R N  + + + + ++    L+  +E+ 
Sbjct: 81  SWNTMIAGYLHNNMVEEAHKLFDLMAE------RDN-FSWALMITCYTRKGMLEKARELF 133

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
              V ++ D   +   A+I  YAK G    A++VF++   + L+ + ++++ Y  +G   
Sbjct: 134 EL-VPDKLDTACW--NAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMG 190

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
            A+  F  M    +    V++  +++   ++  +  AW++F  +       P+   +  M
Sbjct: 191 LAMKFFERMAERNV----VSWNLMVAGFVNNCDLGSAWELFEKIP-----DPNAVSWVTM 241

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-EN 376
           +   +R  +I EA +   +MP K +   W A++  A+   D+++ + V   LF+  P ++
Sbjct: 242 LCGFARHGKIVEARKLFDRMPCK-NVVSWNAMI--AAYVQDLQIDEAV--KLFKETPYKD 296

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
             ++  M N Y + G+ DEA  V  QM    +A
Sbjct: 297 CVSWTTMINGYVRVGKLDEAREVYNQMPYKDVA 329



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 9/209 (4%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFY-EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  R+++SWNS+I G+ Q G Y +  K+L   ++     +PD  T    L +C   + + 
Sbjct: 416 MGVRNVISWNSLITGFLQNGLYLDALKSLV--LMGQEGKKPDQSTFACSLSSCANLAALQ 473

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G ++H  +++S    DL++ NALI MYAKCG +  A  +  ++   D +S++++ISGY 
Sbjct: 474 VGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYA 533

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV----LDLVREM-QASGVRPNA 174
           ++G+  +A   F+ M   G         G++    H  +    +DL + M +   + P A
Sbjct: 534 LNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLA 593

Query: 175 VTISSIFSLFSHFSNLKGGKEI-HGYAVK 202
              S +  L      L+    I  G  VK
Sbjct: 594 EHYSCLVDLLGRMGRLEEAFNIVRGMKVK 622



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 97/204 (47%), Gaps = 16/204 (7%)

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           +N++     I    K G +  A+RVF     ++   + ++++ +A +G  S A  LF++M
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
                Q + V++  +++   H+ +V++A  +F+ M+ +         +A M+   +R   
Sbjct: 75  ----SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFS-----WALMITCYTRKGM 125

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF-VCDHLFEIEP-ENTGNYIIMA 384
           + +A E    +P K     W A+     I+G  + G+F   + +FE  P ++  +Y  M 
Sbjct: 126 LEKARELFELVPDKLDTACWNAM-----IAGYAKKGRFDDAEKVFEKMPVKDLVSYNSML 180

Query: 385 NLYSQAGRWDEADRVREQMKESGL 408
             Y+Q G+   A +  E+M E  +
Sbjct: 181 AGYTQNGKMGLAMKFFERMAERNV 204


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 254/451 (56%), Gaps = 1/451 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++  WN++I G+SQ        +LF +M+  SP  +P  +T  SV +A  Q      G +
Sbjct: 59  NLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQ 118

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  VI+  ++ D +I N ++ MY  CG L  A+ + D  +  D V+++ +I G    G 
Sbjct: 119 LHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGE 178

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           ++K+  LF  M      +WN++ISG V+  R    ++L   MQ  G++P+  T+ S+ + 
Sbjct: 179 IDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNA 238

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ G+ IH Y VKN +  N  V TAIID Y+K G +  A +VF     + L  W
Sbjct: 239 CACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCW 298

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            ++I   A  G  ++AV LF+++ ++ ++PD V+F  VL+AC H+G+VD+A D F  MS 
Sbjct: 299 NSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE 358

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y I+PS++HY+CMV VL RA  + EA E +  MPV P A +WG+LL      G++E+ K
Sbjct: 359 TYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAK 418

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                + E++P  + ++I+++N+Y+    ++EA   R  +KE  + K PG S IE +G +
Sbjct: 419 QAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEV 478

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
             FVA      +S+ IY  L+ L   ++E G
Sbjct: 479 HEFVAGGRLHPRSKDIYHALDDLGLTLKEMG 509



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 37/274 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSWNSMI+GY + G + E   LF  M    + +P   T+VS+L AC     +  
Sbjct: 189 MLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGI-KPSEFTMVSLLNACACLGALRQ 247

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H+++++++  ++  +  A+I MY+KCGS+D                          
Sbjct: 248 GEWIHDYIVKNNFALNSIVITAIIDMYSKCGSID-------------------------- 281

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                KA+ +F+   + GLS WN++I GL  + R    + L  ++++S ++P+ V+   +
Sbjct: 282 -----KALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGV 336

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GR 238
            +  +H   +   K+      +  + + +I   + ++D   + G L  A+ +        
Sbjct: 337 LTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNP 396

Query: 239 SLIIWTAIISAYAAHGD---ASKAVSLFNEMLNN 269
             IIW +++S+   +G+   A +A    NE+  N
Sbjct: 397 DAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPN 430



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 37/270 (13%)

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVRPNAVTISS 179
           G +  A  +F  ++ P L  WN +I G  Q++     + L  +M   +   +P  +T  S
Sbjct: 43  GDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPS 102

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-- 237
           +F  ++       G ++HG  +K   + + ++   I++ Y   GFL  AQR+FD   G  
Sbjct: 103 VFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFD 162

Query: 238 -----------------------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
                                        R+ + W ++IS Y   G   +A+ LF+ M  
Sbjct: 163 VVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQE 222

Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            GI+P   T  ++L+ACA  G + +  W     +   + +   V     ++ + S+   I
Sbjct: 223 EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIV--ITAIIDMYSKCGSI 280

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISG 357
            +A +     P K     W +L+ G ++SG
Sbjct: 281 DKALQVFKSAP-KKGLSCWNSLILGLAMSG 309



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 104/230 (45%), Gaps = 20/230 (8%)

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIID-TYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
           +++K  ++IH   +K    ++   A+ ++    +  G ++ A  VF + +  +L +W  I
Sbjct: 7   TSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTI 66

Query: 247 ISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN----- 299
           I  ++       A+SLF +M+  +   QP  +T+ +V  A A  GL  +   +       
Sbjct: 67  IRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKL 126

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISE-ATEFVSKMPVKPSAKVWGALLYGASISGD 358
            +     IQ ++ +     G L  A+RI + AT F            W  ++ G +  G+
Sbjct: 127 GLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGF--------DVVTWNTMIIGLAKCGE 178

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           ++  + + D +      NT ++  M + Y + GR+ EA  +  +M+E G+
Sbjct: 179 IDKSRRLFDKML---LRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGI 225


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 254/497 (51%), Gaps = 66/497 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M +RD VSWNSMI+ YS  G + E   LF  M +  +                       
Sbjct: 241 MLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQA 300

Query: 38  -----------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
                      +  D V ++  L AC     I  G E+H F I  +  M   + NAL+ M
Sbjct: 301 LKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTM 360

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YA+C  + +A  L     DK  +                               TWN+++
Sbjct: 361 YARCKDIRHAYMLFRLNDDKSRI-------------------------------TWNSML 389

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR-Y 205
           SGL    R E  L L RE+   GV P+ VT +SI  L +  ++L+ G+E H Y  K+R +
Sbjct: 390 SGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDF 449

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
             ++ +  A++D YA+ G +  A+R+F     +  + +T++I+ Y   G+  KAV LF E
Sbjct: 450 RDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEE 509

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M    I+PD +T  AVLSAC+HSGLV++A  +F  M   +G+ P +EHYACM  +  R  
Sbjct: 510 MKRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVG 569

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
            +++A E +++MP +P++ +W  L+    I G++++G++  + L E+ PE++G Y+++AN
Sbjct: 570 LLNKAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIAN 629

Query: 386 LYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILER 445
           +Y+ AG W +   +R  M++SG+AKIPG SW++      SF   DTS  ++ +  L+L+ 
Sbjct: 630 MYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDVGSEFISFSVGDTSSPQALESKLLLDS 689

Query: 446 LLGLMREEGYVLLDEVE 462
           L  +M+    ++ D  +
Sbjct: 690 LYDVMKHGSLIMTDSYD 706



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 206/407 (50%), Gaps = 17/407 (4%)

Query: 8   SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
           SWN +I  Y +   YE     +++M++  V RPD  T  S+L+ACG++ ++ FG+EVH  
Sbjct: 147 SWNILITSYVKHKLYEAAILAYKQMVSKGV-RPDNFTFPSILKACGETQNLKFGLEVHKS 205

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           +        L++ NALI MY +CG +D AR L D M ++D VS++++IS Y   G   +A
Sbjct: 206 INSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREA 265

Query: 128 MDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            +LF+ M+   L     TWN +  G ++       L L+ +M+  G+  + V +      
Sbjct: 266 FELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGA 325

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            SH   ++ GKEIHG+ +++ +     V  A++  YA+   +  A  +F     +S I W
Sbjct: 326 CSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITW 385

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            +++S     G   +A+ LF E+L  G++PD VTF ++L  CA    +    +    ++ 
Sbjct: 386 NSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITK 445

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
               +  +  +  +V + +RA ++SEA      +  K     + +L+ G  + G  E GK
Sbjct: 446 HRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEV-TYTSLIAGYGMQG--EGGK 502

Query: 364 FVCDHLFE------IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
            V   LFE      I+P++    I + +  S +G  ++A+ +  +M+
Sbjct: 503 AV--RLFEEMKRFQIKPDHI-TMIAVLSACSHSGLVNQAELLFAEMQ 546



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 162/391 (41%), Gaps = 74/391 (18%)

Query: 48  VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
           +L +C +SS +  G ++H  +I S +  D ++ + L+  Y+   SL++    L E     
Sbjct: 85  LLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYS---SLEF----LPE----- 132

Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                        H  VE + +LF    RP   +WN +I+  V++  +EA +   ++M +
Sbjct: 133 ------------AHTLVETS-NLF----RP--CSWNILITSYVKHKLYEAAILAYKQMVS 173

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GVRP+  T  SI        NLK G E+H          +++V  A+I  Y + G +  
Sbjct: 174 KGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDT 233

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAH---------------------------------- 253
           A+ +FD    R  + W ++IS Y++                                   
Sbjct: 234 ARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLR 293

Query: 254 -GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE 312
            G+ ++A+ L ++M N GI  D V     L AC+H G +    +I       Y    S  
Sbjct: 294 VGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTV 353

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE--LGKFVCDHLF 370
             A +V + +R + I  A   + ++    S   W ++L G +  G VE  L  F    LF
Sbjct: 354 QNA-LVTMYARCKDIRHAY-MLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLF 411

Query: 371 EIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
            +EP+    Y+  A++     R  +    RE
Sbjct: 412 GVEPD----YVTFASILPLCARVADLQHGRE 438



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           S+L  GK++HG+ + +    + ++ + ++  Y+   FL  A  + +         W  +I
Sbjct: 93  SSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILI 152

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307
           ++Y  H     A+  + +M++ G++PD  TF ++L AC  +  +    ++  +++  +  
Sbjct: 153 TSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSIN-SWST 211

Query: 308 QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG----DVELGK 363
             S+  +  ++ +  R   +  A      M ++  A  W +++   S  G      EL +
Sbjct: 212 PWSLFVHNALISMYGRCGEVDTARNLFDNM-LERDAVSWNSMISCYSSRGMWREAFELFE 270

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            +     EI   N   + I+A    + G + +A ++  QM+  G+
Sbjct: 271 SMQSKCLEI---NVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGI 312


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 248/468 (52%), Gaps = 37/468 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD +SW  MI G  Q G   E   +FREM  +     D  T  SVL ACG    +  
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAG-FAMDQFTFGSVLTACGSLLALGE 288

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H +VI +  K ++++ +AL+ MY+KC S+  A  +   M  K+ +S          
Sbjct: 289 GKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVIS---------- 338

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A++ G  QN   E  + +  EMQ +GV P+  T+ S+
Sbjct: 339 ---------------------WTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSV 377

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + H  A+ +     I V+ A+I  Y K G    + R+F     R  
Sbjct: 378 ISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDE 437

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+++ YA  G A++ + LF  ML +G++PD VTF  VLSAC+ +GLV+K    F +
Sbjct: 438 VSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFES 497

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI P V+H  C++ +L RA R+ EA  F++ MP  P    W  LL    + GD+E
Sbjct: 498 MIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDME 557

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK+  D L  +EP+N  +Y+++++LY+  G+WD+  ++R  M++  + K PG SWI+  
Sbjct: 558 IGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYK 617

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEE 463
           G +  F A D S     QIY  LE+L   M EEGYV     +L +VEE
Sbjct: 618 GKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEE 665



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 210/414 (50%), Gaps = 6/414 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD VSWN  I+GY+  G   +   +++ ML    +  + +T  ++L  C +   +  
Sbjct: 97  MPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +++  +++     D+++ + L+ MY K G +  A+   DEM +++ V  + +I+G M 
Sbjct: 157 GRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMR 216

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E++  LF  +K     +W  +I+GL+QN      LD+ REM+ +G   +  T  S+
Sbjct: 217 CGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSV 276

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +       L  GK+IH Y ++  +  N++V +A++D Y+K   +  A+ VF R   +++
Sbjct: 277 LTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNV 336

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA++  Y  +G + +AV +F EM  NG++PD  T  +V+S+CA+   +++    F+ 
Sbjct: 337 ISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHC 395

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            +   G+   +     ++ +  +      +    ++M ++     W ALL G +  G   
Sbjct: 396 RALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS-WTALLAGYAQFGKAN 454

Query: 361 --LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM-KESGLAKI 411
             +G F       ++P+    +I + +  S+AG  ++  +  E M KE G+  I
Sbjct: 455 ETIGLFERMLAHGLKPDGV-TFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPI 507



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 161/347 (46%), Gaps = 42/347 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S+L+ C +S +     ++H  ++++  + + ++ N LI  Y K G+L YA  + D +   
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQP 69

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMK-RPGLSTWNAVISGLVQNNRHEAVLDLVR-- 163
           +  S++ I+S Y   G + +   +F +M  R G+S WN  ISG      + +  D VR  
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVS-WNLAISGYAN---YGSCSDAVRVY 125

Query: 164 --EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
              ++ + +  N +T S++  L S F  +  G++I+G  +K  +  +++V + ++D Y K
Sbjct: 126 KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK 185

Query: 222 TGFLHGAQRVFDRFKGRSLII-------------------------------WTAIISAY 250
            G ++ A+R FD    R++++                               WT +I+  
Sbjct: 186 LGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
             +G   +A+ +F EM   G   D  TF +VL+AC     + +   I +A   +   + +
Sbjct: 246 MQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQI-HAYVIRTDHKDN 304

Query: 311 VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           V   + +V + S+ R I  A     +MP K +   W A+L G   +G
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQK-NVISWTAMLVGYGQNG 350



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 39/265 (14%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           +S+  L     N    K++H   +K       +++  +I  Y K G L  A  VFD    
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 238 RSLIIWTAI-------------------------------ISAYAAHGDASKAVSLFNEM 266
            +L  W  I                               IS YA +G  S AV ++  M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 267 LNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           L +  +  + +TF+ +L  C+    VD    I N    ++G    V   + +V + ++  
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQI-NGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMA 384
            I +A  +  +MP + +  +   ++ G    G +E   +  C     ++  ++ ++ IM 
Sbjct: 188 LIYDAKRYFDEMPER-NVVMCNTMITGLMRCGMIEESQRLFCG----LKERDSISWTIMI 242

Query: 385 NLYSQAGRWDEADRVREQMKESGLA 409
               Q G   EA  +  +M+ +G A
Sbjct: 243 TGLMQNGLEREALDMFREMRLAGFA 267


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 256/471 (54%), Gaps = 15/471 (3%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP---DGVTVVSVLQACGQSSDIV-FGM 62
           + WN MI  YS+    +E   LF +ML     RP   D  T   V  AC +   +  +G 
Sbjct: 120 IIWNLMIQAYSKTPSSQESLYLFHQMLAHG--RPTSADKYTFTFVFTACSRHPTLRGYGE 177

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            VH  V++   + D+++ N+L+ MY+    +  A+ + DEM  +D +++++++ GY + G
Sbjct: 178 NVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRG 237

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIF 181
            + +A +LF +M      +W  +++G V +  +   L    +M     V+PN   + SI 
Sbjct: 238 ELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSIL 297

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  +H   L  GK IH Y  KNR   +  ++TA+ID YAK G +  A+RVFD    R L+
Sbjct: 298 SACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLL 357

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            WT++IS  + HG  ++ +  F+EML  G +PD +T   VL+ C+HSGLV++   IF+ M
Sbjct: 358 TWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDM 417

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
              +GI P +EHY C++ +L RA R+  A E +  MP++P    W ALL    I GDV+L
Sbjct: 418 IPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDL 477

Query: 362 GKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           G+ + +H+ E+ P  + G Y++++NLY+  G+W+   +VR+ M + G    PG SWIE  
Sbjct: 478 GERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEID 537

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEE 464
           G +  F+A D    +  +I   L  +L  +  EG        VL D  EE+
Sbjct: 538 GVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEED 588



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 39/271 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW  M+AGY    FY E    F +ML    ++P+   +VS+L AC     +  
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H ++ ++ I +   I  ALI MYAKCG +D AR + D +  +D ++++++ISG  +
Sbjct: 309 GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSM 368

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   + +  F                                EM A G +P+ +T+  +
Sbjct: 369 HGLGAECLWTFS-------------------------------EMLAEGFKPDDITLLGV 397

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +  SH   ++ G  I H           +     +ID   + G L  A   F+  K   
Sbjct: 398 LNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESA---FEAIKSMP 454

Query: 240 L----IIWTAIISAYAAHGDASKAVSLFNEM 266
           +    + W A++SA   HGD      + N +
Sbjct: 455 MEPDVVAWRALLSACRIHGDVDLGERIINHI 485



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 118/291 (40%), Gaps = 70/291 (24%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P   T V +L+     + I    ++H  V+   +  +  +   LI  Y  C +L +AR +
Sbjct: 53  PSHSTFVQLLKKRPSLTQI---KQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D                              Q    P    WN +I    +    +  L
Sbjct: 110 FD------------------------------QFPSLPPTIIWNLMIQAYSKTPSSQESL 139

Query: 160 DLVREMQASGVRPNAV---TISSIFSLFSHFSNLKG-GKEIHGYAVKNRYDRNIYVATAI 215
            L  +M A G RP +    T + +F+  S    L+G G+ +HG  VK+ Y+ +I+V  ++
Sbjct: 140 YLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSL 198

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL------------- 262
           ++ Y+    +  A+RVFD    R +I WT+++  YA  G+  +A  L             
Sbjct: 199 VNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWA 258

Query: 263 ------------------FNEML-NNGIQPDPVTFTAVLSACAHSGLVDKA 294
                             FN+ML ++ ++P+     ++LSACAH G +D+ 
Sbjct: 259 VMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQG 309



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S+   L     +L   K+IH   V +   +N  +   +I +Y     L  A+ VFD+F  
Sbjct: 56  STFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPS 115

Query: 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG--IQPDPVTFTAVLSACAHSGLVDKA 294
               IIW  +I AY+    + +++ LF++ML +G     D  TFT V +AC+    +   
Sbjct: 116 LPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGY 175

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
            +  + M  + G +  +     +V + S   R+ +A     +MP +     W +++ G +
Sbjct: 176 GENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQR-DVITWTSVVKGYA 234

Query: 355 ISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEA 396
           + G++   +     LF++ P  N  ++ +M   Y     ++EA
Sbjct: 235 MRGELVRAR----ELFDMMPGRNDVSWAVMVAGYVGHRFYNEA 273


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 245/456 (53%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  R +VSW S+I+GY Q G   E   +F+EM    V +PD + +VSV+ A     D+  
Sbjct: 161 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV-KPDWIALVSVMTAYTNVEDLGQ 219

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  V +  ++ +  I  +L  MYAK                               
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTTMYAK------------------------------- 248

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A   F  M++P L  WNA+ISG   N   E  + L REM    +R +++T+ S 
Sbjct: 249 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 308

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +   +L+  + + GY  K+ Y  + +V T +ID YAK G ++ A+ VFDR   + +
Sbjct: 309 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 368

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W+ +I  Y  HG   +A+ L+NEM   G+ P+  TF  +L+AC +SGLV + W++F+ 
Sbjct: 369 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 428

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+P  +HY+C+V +L RA  +++A +F+  MP+KP   VWGALL    I   V 
Sbjct: 429 MP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 487

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+   + LF ++P NTG+Y+ ++NLY+ A  W     VR  M + GL K  G S IE +
Sbjct: 488 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 547

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G L++F   D S  KS++I+  L+RL   ++  GYV
Sbjct: 548 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYV 583



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 154/294 (52%), Gaps = 32/294 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+ DI+ WN++I GY+Q    +    ++ +M  S V  P+  T + VL+ACG +S    
Sbjct: 60  VSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQV-HPNCFTFLYVLKACGGTSVEGI 118

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H    +     ++++ N+L+ MYAK G + YAR + D++ D+  VS+++IISGY+ 
Sbjct: 119 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 178

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G   +A+++F                               +EM+   V+P+ + + S+
Sbjct: 179 NGDPMEALNVF-------------------------------KEMRQCNVKPDWIALVSV 207

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            + +++  +L  GK IHG   K   +    +  ++   YAK G +  A+  F+R +  +L
Sbjct: 208 MTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNL 267

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
           I+W A+IS YA +G   +A+ LF EM+   I+ D +T  + + A A  G ++ A
Sbjct: 268 ILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA 321



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 2/243 (0%)

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I+  +  G V  A   F+ +  P +  WNA+I G  Q N  +A + +  +MQ S V PN 
Sbjct: 41  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNC 100

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
            T   +       S    GK+IHG   K  +  N++V  +++  YAK G +  A+ VFD+
Sbjct: 101 FTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDK 160

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R+++ WT+IIS Y  +GD  +A+++F EM    ++PD +   +V++A  +   + + 
Sbjct: 161 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 220

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             I + +  + G++   +    +  + ++   +  A  F ++M  KP+  +W A++ G +
Sbjct: 221 KSI-HGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYA 278

Query: 355 ISG 357
            +G
Sbjct: 279 NNG 281


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 258/465 (55%), Gaps = 5/465 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           M   +IVS+N++I+ ++  G Y E   +FR+M     +L  D +T+VS+   C     + 
Sbjct: 103 MPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALE 162

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           F  +VH   I   ++ ++ +CNA++  Y KCG  D + ++   M ++D V++++++  Y 
Sbjct: 163 FLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYN 222

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               ++ A  +F  M    + TW A+I+ LV+N      LDL ++M      PNA T   
Sbjct: 223 QTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVG 282

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD---RNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           + S  +  + +  GKEIHG  ++   +    N+YV  A+ID Y+K+G +  A+ +F+   
Sbjct: 283 VLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLIL 342

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + ++ W ++I+ +A +G   +A+  F +M   GI+P+ VTF AVLSAC+H+GL  +   
Sbjct: 343 EKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLC 402

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV-KPSAKVWGALLYGASI 355
           I   M   Y I+PS+EHYA M+ +  R  R++EA + +S+ P       +WGA+L    I
Sbjct: 403 ILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRI 462

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             +++L     + LFE+EP+N G Y++++N+++ A RW +A  VR+ M+E G  K    S
Sbjct: 463 HENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAHNVRKLMEERGFKKEVAYS 522

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460
            IE       FVA+D S  +  +IY ++  LL  M   GY+ LD+
Sbjct: 523 CIEIRNIRHKFVARDNSHSQMGEIYELMFILLEHMNIIGYMALDD 567



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 33/293 (11%)

Query: 38  LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97
           L P       +   C Q   +  GM +H+ +I++ +  DL++ N LI MY+KC S++ A+
Sbjct: 7   LFPSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQ 66

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157
              D++  ++  S++ I++ Y   GF  +A  +F  M  P + ++N +IS    +  +  
Sbjct: 67  KAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVE 126

Query: 158 VLDLVREMQASG--VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
            +++ R+MQ     +  + +T+ SI    +    L+  +++HG A+    + N+ V  AI
Sbjct: 127 SMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAI 186

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLI-------------------------------IWT 244
           +D Y K G    +  +F R K R ++                                WT
Sbjct: 187 VDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWT 246

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           A+I+A   +  +++A+ LF +ML     P+  TF  VLSACA   L+ K  +I
Sbjct: 247 ALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEI 299



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 110/254 (43%), Gaps = 47/254 (18%)

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
           S + P+    + +FS      +L+ G  +H + +K     ++++A  +ID Y+K   +  
Sbjct: 5   SDLFPSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMEN 64

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           AQ+ FD    R++  W  I+++Y+  G  S+A  +F+EM      P+ V++  ++S+  H
Sbjct: 65  AQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEM----PHPNIVSYNTLISSFTH 120

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
            GL  ++ +IF  M   + +                      A + ++ + +  +    G
Sbjct: 121 HGLYVESMNIFRQMQQDFDLL---------------------ALDEITLVSIAGTCACLG 159

Query: 348 AL-----LYGASISGDVELGKFVCDHLFE-----------------IEPENTGNYIIMAN 385
           AL     ++GA+I   +E    VC+ + +                 ++  +   +  M  
Sbjct: 160 ALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVV 219

Query: 386 LYSQAGRWDEADRV 399
            Y+Q  R D+A RV
Sbjct: 220 AYNQTSRLDDAFRV 233


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 253/482 (52%), Gaps = 49/482 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREML----------NSPVLRPDGVTVVSVLQ 50
           + +R++VSW SMI+GY Q     E   LF+E L              +  D V +  V+ 
Sbjct: 147 IPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVIS 206

Query: 51  ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110
           AC +         VH   ++   +  L + N L+  YAKCG +  +R + D M + D   
Sbjct: 207 ACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETD--- 263

Query: 111 YSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG- 169
                                       + +WN++I+   QN        L  +M   G 
Sbjct: 264 ----------------------------VCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGE 295

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           VR NAVT+S++    +H   L+ GK IH   VK   + N+ V T+I+D Y K G +  A+
Sbjct: 296 VRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMAR 355

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           + FDR K +++  WT +++ Y  HG   +A+ +F EM+  GI+P+ +TF +VL+AC+H+G
Sbjct: 356 KAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAG 415

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           L+ + W  FN M  ++ ++P +EHY+CMV +L RA  + EA   + +M VKP   VWG+L
Sbjct: 416 LLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSL 475

Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
           L    I  +VELG+     LF+++P N G Y++++N+Y+ AGRWD+ +R+R  MK  GL 
Sbjct: 476 LGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLL 535

Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLD-EVE 462
           K PG S +E  G +  F+  D    + E+IY  L+ L   ++E GY      VL D +VE
Sbjct: 536 KTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVE 595

Query: 463 EE 464
           E+
Sbjct: 596 EK 597



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 209/444 (47%), Gaps = 65/444 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           + K  + SWNS+IA +++ G  +  +AL+    +    L P+  T    +++C    D+ 
Sbjct: 46  VDKTSVYSWNSIIADFARSG--DSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLC 103

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G ++H          D+++ +ALI MY+KCG L+ AR L DE+ +++ VS++++ISGY+
Sbjct: 104 AGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYV 163

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +    +A+ LF+                LV    ++       E+   GV  ++V +  
Sbjct: 164 QNERAREAVFLFKEFL-------------LVDETDYD-------EIVGVGVGVDSVLLGC 203

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S  +        + +HG AVK  ++  + V   ++D YAK G +  +++VFD  +   
Sbjct: 204 VISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETD 263

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +  W ++I+ YA +G + +A SLF++M+  G ++ + VT +AVL ACAHSG +     I 
Sbjct: 264 VCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIH 323

Query: 299 NA-----MSGQYGIQPSVEHYACMVGVLSRARRI-------------------------S 328
           +      +     +  S+    C  G +  AR+                           
Sbjct: 324 DQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGK 383

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELG-----KFVCDHLFEIEPENTGNY 380
           EA +   +M    +KP+   + ++L   S +G ++ G     K  C+  F++EP    +Y
Sbjct: 384 EAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCE--FDVEP-GIEHY 440

Query: 381 IIMANLYSQAGRWDEADRVREQMK 404
             M +L  +AG   EA  + ++MK
Sbjct: 441 SCMVDLLGRAGYLKEAYGLIQEMK 464


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 254/467 (54%), Gaps = 38/467 (8%)

Query: 4   RDIVSWNSMIAGYSQ-GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
            ++ SW +MI GY Q GG+ EE   LFR M+ + V+ P+  T  S L+AC   + +  G 
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-PNHFTFSSTLKACANLAALRIGE 396

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +V    ++        + N+LI MYA+ G +D AR                         
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR------------------------- 431

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
              KA D   ++    L ++N VI    +N   E  L+L  E++  G+  +A T +S+ S
Sbjct: 432 ---KAFD---ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    +  G++IH   +K+    N  V  A+I  Y++ G +  A +VF+  + R++I 
Sbjct: 486 GAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS 545

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WT+II+ +A HG A++A+ LF++ML  G++P+ VT+ AVLSAC+H GLV++ W  F +M 
Sbjct: 546 WTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMY 605

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            ++G+ P +EHYAC+V +L R+  +SEA +F++ MP K  A VW   L    + G++ELG
Sbjct: 606 TEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELG 665

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           K     + E EP +   YI+++NLY+   +WDE   +R+ MKE  L K  G SW+E    
Sbjct: 666 KHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENK 725

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           +  F   DTS  K+ +IY  L+ L   +++ GYV     +L +VEEE
Sbjct: 726 VHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEE 772



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 170/361 (47%), Gaps = 38/361 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ V+W  MI    Q G+  E   LF +M+ S    PD  T+  V+ AC     ++ 
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSG-YEPDRFTLSGVISACANMELLLL 289

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAIISG 117
           G ++H+  I   + +D  +   LI MYAKC   GS+  AR + D++ D +  S       
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS------- 342

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNAVT 176
                                   W A+I+G VQ   + E  LDL R M  + V PN  T
Sbjct: 343 ------------------------WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFT 378

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            SS     ++ + L+ G+++  +AVK  +     VA ++I  YA++G +  A++ FD   
Sbjct: 379 FSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILF 438

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++LI +  +I AYA + ++ +A+ LFNE+ + G+     TF ++LS  A  G + K   
Sbjct: 439 EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQ 498

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           I +A   + G++ +      ++ + SR   I  A +    M  + +   W +++ G +  
Sbjct: 499 I-HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFAKH 556

Query: 357 G 357
           G
Sbjct: 557 G 557



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 121/255 (47%), Gaps = 34/255 (13%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +++++S+N++I  Y++    EE   LF E+ +   +     T  S+L        I  G 
Sbjct: 439 EKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG-MGASAFTFASLLSGAASIGTIGKGE 497

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  VI+S +K++  +CNALI MY++CG+++ A  + ++M D++ +S+++II+G+  HG
Sbjct: 498 QIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHG 557

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           F  +A++LF                                +M   GVRPN VT  ++ S
Sbjct: 558 FATQALELFH-------------------------------KMLEEGVRPNEVTYIAVLS 586

Query: 183 LFSHFSNLKGG-KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-L 240
             SH   +  G K       ++     +     I+D   ++G L  A +  +    ++  
Sbjct: 587 ACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADA 646

Query: 241 IIWTAIISAYAAHGD 255
           ++W   + A   HG+
Sbjct: 647 LVWRTFLGACRVHGN 661



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 136/292 (46%), Gaps = 38/292 (13%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S RD++SW++M++ ++           F +M+ +    P+     +  +AC  +  +  G
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY-PNEYCFAAATRACSTAEFVSVG 187

Query: 62  MEVHNFVIES-HIKMDLWICNALIGMYAKC-GSLDYARALLDEMSDKDEVSYSAIISGYM 119
             +  FVI++ +++ D+ +   LI M+ K  G L  A  + ++M +++ V          
Sbjct: 188 DSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAV---------- 237

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                TW  +I+ L+Q       +DL  +M  SG  P+  T+S 
Sbjct: 238 ---------------------TWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSG 276

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT---GFLHGAQRVFDRFK 236
           + S  ++   L  G+++H  A+++    +  V   +I+ YAK    G +  A+++FD+  
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 237 GRSLIIWTAIISAYAAHGD-ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
             ++  WTA+I+ Y   G    +A+ LF  M+   + P+  TF++ L ACA+
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 39  RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
            PD  T    L+ C ++     G  VH  + +S +++D    N+LI +Y+KCG       
Sbjct: 63  HPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQW----- 117

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEA 157
                                     EKA  +F++M     L +W+A++S    NN    
Sbjct: 118 --------------------------EKATSIFRLMGSSRDLISWSAMVSCFANNNMGFR 151

Query: 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-DRNIYVATAII 216
            L    +M  +G  PN    ++     S    +  G  I G+ +K  Y   ++ V   +I
Sbjct: 152 ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLI 211

Query: 217 DTYAK-TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           D + K  G L  A +VF++   R+ + WT +I+     G A +A+ LF +M+ +G +PD 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDR 271

Query: 276 VTFTAVLSACAHSGLV 291
            T + V+SACA+  L+
Sbjct: 272 FTLSGVISACANMELL 287



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+++SW S+I G+++ GF  +   LF +ML   V RP+ VT ++VL AC     +  
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV-RPNEVTYIAVLSACSHVGLVNE 596

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G +    +   H    +M+ + C  ++ +  + GSL  A   ++ M  K D + +   + 
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYAC--IVDILGRSGSLSEAIQFINSMPYKADALVWRTFLG 654

Query: 117 GYMVHGFVE 125
              VHG +E
Sbjct: 655 ACRVHGNLE 663



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 134 MKRPGLSTWNAVISGLVQ---NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
           ++ P  +  N +   L+Q   N R    +  +  M   G  P+  T S          + 
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIIS 248
             G  +H    ++    +     ++I  Y+K G    A  +F R  G  R LI W+A++S
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVS 141

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            +A +    +A+  F +M+ NG  P+   F A   AC+ +  V     IF  +     +Q
Sbjct: 142 CFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQ 201

Query: 309 PSVEHYACMVGVLSRAR-RISEATEFVSKMPVKPSAKVWGALL 350
             V     ++ +  + R  +  A +   KMP + +A  W  ++
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPER-NAVTWTLMI 243


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 274/521 (52%), Gaps = 60/521 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---- 57
           ++R++V+W ++++GY++ G  +E + LF+ M    V+  +  T++      G++ D    
Sbjct: 99  ARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWN--TMLEAYAVAGRAGDACAL 156

Query: 58  -------------IVFGMEVHNFVIESHIKM-------DLWICNALIGMYAKCGSLDYAR 97
                        I+  M V +  ++   ++       D+     ++   A+ G++D AR
Sbjct: 157 FDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEAR 216

Query: 98  ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN---- 153
            L D M +++ VS++A+ISGY  +  +++A+DLF  M    +++ N +I+G +QN     
Sbjct: 217 LLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKR 276

Query: 154 ---------------------------RHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
                                      + E  L L R M  SG+RPN VT        S 
Sbjct: 277 ARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSD 336

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            + L  GK++H    K  +  + +V +A+++ YAK G +  A+++FD  + + LI W  I
Sbjct: 337 LATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGI 396

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+AYA HG   +A+ L+ +M  NG +P+ VT+  +LSAC+HSGLVD+   IF +M     
Sbjct: 397 IAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRS 456

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP-SAKVWGALLYGASISGDVELGKFV 365
           I    EHY C++ + SRA R+ +A   +  + +KP S  VW ALL G +  G+  +G   
Sbjct: 457 IAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLA 516

Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
             +L + EP+N G Y +++N+Y+ AG+W EA  +R +M   GL K PG SWIE +  +  
Sbjct: 517 ARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHV 576

Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGYVLLD--EVEEE 464
           FVA+D S  +S+ IY +L+ +  +MR  G V  D   V+EE
Sbjct: 577 FVARDKSHSESDLIYGLLQNIHYMMRIVGTVPSDLVHVDEE 617



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 48/313 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++V+W +M+ GY +G   E    LFR ML S + RP+ VT +  L AC   + +  
Sbjct: 284 MPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGI-RPNQVTFLGALDACSDLATLCE 342

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  + ++  ++D ++ +AL+ +YAKCG +  AR L D   +KD +S++ II+ Y  
Sbjct: 343 GKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAH 402

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+ L++                               +MQ +G RPN VT   +
Sbjct: 403 HGVGIEAIHLYE-------------------------------KMQGNGYRPNDVTYVVL 431

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA----TAIIDTYAKTGFLHGAQRV--FDR 234
            S  SH   +  G +I    V    DR+I V     T +ID  ++ G L  A+R+  + +
Sbjct: 432 LSACSHSGLVDEGLKIFESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLK 488

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV---TFTAVLSACAHSGLV 291
            K  S  +W+A++    AHG+     S+ N    N IQ +P    T+T + +  A +G  
Sbjct: 489 IKPASGSVWSALLGGCNAHGNE----SIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKW 544

Query: 292 DKAWDIFNAMSGQ 304
            +A +I + M+ +
Sbjct: 545 KEAAEIRSEMNNR 557



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 14/192 (7%)

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           +I   A  G +  A+++FD    R ++ WTA++SAYA  G    A SLF+    +  + +
Sbjct: 46  LIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDR---SDARRN 102

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334
            VT+TA+LS  A +GLVD+A  +F  M      Q +V  +  M+   + A R  +A    
Sbjct: 103 VVTWTALLSGYARAGLVDEAEVLFQRMP-----QRNVVSWNTMLEAYAVAGRAGDACALF 157

Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRW 393
            +MPV+  A  W  LL     SG V+  +     LF   PE +   +  M +  +++G  
Sbjct: 158 DRMPVR-DAGSWNILLAMLVRSGSVDKAR----ELFGRMPERDVMAWTTMVDGVARSGNV 212

Query: 394 DEADRVREQMKE 405
           DEA  + + M E
Sbjct: 213 DEARLLFDSMPE 224


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 247/467 (52%), Gaps = 37/467 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+VSW +MIAGY+Q   + E   LF+EM +  +   D +   S + AC     +  
Sbjct: 534 LKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI-HSDNIGFASAISACAGIQALNQ 592

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H     S    DL + NAL+ +YA+CG +  A    D++  KD +S          
Sbjct: 593 GQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS---------- 642

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISG  Q+   E  L L  +M  +G   N+ T    
Sbjct: 643 ---------------------WNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPA 681

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ +N+K GK+IH   +K  +D    V+  +I  YAK G +  A+R F     ++ 
Sbjct: 682 VSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNE 741

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+++ Y+ HG   KA+SLF +M   G+ P+ VTF  VLSAC+H GLVD+    F +
Sbjct: 742 ISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQS 801

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +G+ P  EHYAC+V +L R+  +S A  FV +MP++P A V   LL    +  +++
Sbjct: 802 MREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNID 861

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EP+++  Y++++N+Y+  G+W   DR R+ MK+ G+ K PGRSWIE +
Sbjct: 862 IGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVN 921

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVE 462
             + +F A D      ++IY  L  L  L  E GY+     LL++ E
Sbjct: 922 NSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAE 968



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 178/360 (49%), Gaps = 34/360 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VS+NS+I+G SQ G+ ++   LF++M     L+PD VTV S+L AC     ++ 
Sbjct: 332 MLQRDEVSYNSLISGLSQQGYSDKALELFKKMC-LDCLKPDCVTVASLLSACSSVGALLV 390

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G + H++ I++ +  D+ +  AL+ +Y KC  +  A         ++ V ++ ++  Y  
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY-- 448

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G ++   + F++                              +MQ  G+ PN  T  SI
Sbjct: 449 -GLLDNLNESFKIFT----------------------------QMQMEGIEPNQFTYPSI 479

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    +  G++IH   +K  +  N+YV++ +ID YAK G L  A ++F R K + +
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+I+ YA H   ++A++LF EM + GI  D + F + +SACA    +++   I +A
Sbjct: 540 VSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQI-HA 598

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            +   G    +     +V + +R  ++ +A     K+  K +   W +L+ G + SG  E
Sbjct: 599 QACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS-WNSLISGFAQSGHCE 657



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 171/352 (48%), Gaps = 34/352 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + KRD VSW +M++G SQ G  EE   LF +M  S V  P      SVL AC +      
Sbjct: 231 LQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVY-PTPYIFSSVLSACTKVEFYKV 289

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++    ++ ++CNAL+ +Y++ G+   A  + + M  +DEVSY+++ISG   
Sbjct: 290 GEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQ 349

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G+ +KA++LF+ M                        LD         ++P+ VT++S+
Sbjct: 350 QGYSDKALELFKKM-----------------------CLDC--------LKPDCVTVASL 378

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S    L  GK+ H YA+K     +I +  A++D Y K   +  A   F   +  ++
Sbjct: 379 LSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENV 438

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ AY    + +++  +F +M   GI+P+  T+ ++L  C+    VD    I   
Sbjct: 439 VLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQ 498

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           +  + G Q +V   + ++ + ++  ++  A +   ++  K     W A++ G
Sbjct: 499 VL-KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVS-WTAMIAG 548



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 182/414 (43%), Gaps = 44/414 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R +  WN ++  +  G        LFR ML   V +PD  T   VL+ CG   D+ F
Sbjct: 129 MPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKV-KPDERTYAGVLRGCG-GGDVPF 186

Query: 61  GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
               ++H   I    +  L++CN LI +Y K G L+ A+ + D +  +D VS+ A++SG 
Sbjct: 187 HCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGL 246

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G  E+A+ LF                                +M  SGV P     S
Sbjct: 247 SQSGCEEEAVLLFC-------------------------------QMHTSGVYPTPYIFS 275

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S  +     K G+++HG  +K  +    YV  A++  Y++ G    A++VF+    R
Sbjct: 276 SVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQR 335

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--LVDKAWD 296
             + + ++IS  +  G + KA+ LF +M  + ++PD VT  ++LSAC+  G  LV K   
Sbjct: 336 DEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-- 393

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL--YGAS 354
            F++ + + G+   +     ++ +  +   I  A EF      + +  +W  +L  YG  
Sbjct: 394 -FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVAYGLL 451

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
            + +     F    +  IEP N   Y  +    S     D  +++  Q+ ++G 
Sbjct: 452 DNLNESFKIFTQMQMEGIEP-NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGF 504



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 182/414 (43%), Gaps = 44/414 (10%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++V WN M+  Y       E   +F +M    +  P+  T  S+L+ C     +  G ++
Sbjct: 437 NVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI-EPNQFTYPSILRTCSSLRAVDLGEQI 495

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V+++  + ++++ + LI MYAK G LD+A                            
Sbjct: 496 HTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHA---------------------------- 527

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
              + +F+ +K   + +W A+I+G  Q+ +    L+L +EMQ  G+  + +  +S  S  
Sbjct: 528 ---LKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISAC 584

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +    L  G++IH  A  + Y  ++ V  A++  YA+ G +  A   FD+   +  I W 
Sbjct: 585 AGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWN 644

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           ++IS +A  G   +A+SLF++M   G + +  TF   +SA A+   V     I +AM  +
Sbjct: 645 SLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQI-HAMIIK 703

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
            G     E    ++ + ++   I +A     +MP K     W A+L G S  G      F
Sbjct: 704 TGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEIS-WNAMLTGYSQHGH----GF 758

Query: 365 VCDHLFEIEPE-----NTGNYIIMANLYSQAGRWDEADRVREQMKE-SGLAKIP 412
               LFE   +     N   ++ + +  S  G  DE  +  + M+E  GL   P
Sbjct: 759 KALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKP 812



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 150/380 (39%), Gaps = 87/380 (22%)

Query: 29  FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
           F  ++    +R +  T + +L  C  S     G ++H  +++     ++ +C  L+ +Y 
Sbjct: 55  FLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI 114

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
             G LD A  + DEM                                RP LS WN V+  
Sbjct: 115 AFGDLDGAVTVFDEMP------------------------------VRP-LSCWNKVLHR 143

Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG-------KEIHGYAV 201
            V       VL L R M    V+P+  T + +           GG       ++IH   +
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLR------GCGGGDVPFHCVEKIHARTI 197

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            + Y+ +++V   +ID Y K GFL+ A++VFD  + R  + W A++S  +  G   +AV 
Sbjct: 198 THGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVL 257

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAH----------SGLVDK------------------ 293
           LF +M  +G+ P P  F++VLSAC             GLV K                  
Sbjct: 258 LFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYS 317

Query: 294 -------AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSA 343
                  A  +FNAM     +Q     Y  ++  LS+     +A E   KM    +KP  
Sbjct: 318 RLGNFIPAEQVFNAM-----LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDC 372

Query: 344 KVWGALLYGASISGDVELGK 363
               +LL   S  G + +GK
Sbjct: 373 VTVASLLSACSSVGALLVGK 392



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 18/224 (8%)

Query: 143 NAVISGLVQNNRHEAV-LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           N  +S    N+  EA  ++ +  M+  GVR N+ T   +            G ++HG  +
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
           K  +   + +   ++D Y   G L GA  VFD    R L  W  ++  + A   A + + 
Sbjct: 96  KMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLG 155

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----- 316
           LF  ML   ++PD  T+  VL  C    +     +  +A +  +G + S+  + C     
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSL--FVCNPLID 213

Query: 317 ---MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
                G L+ A+++ +  +       K  +  W A+L G S SG
Sbjct: 214 LYFKNGFLNSAKKVFDGLQ-------KRDSVSWVAMLSGLSQSG 250


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 257/457 (56%), Gaps = 11/457 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEEC----KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           R++VS+N++++     G   E       L R+    P L  D  TVVSV  AC       
Sbjct: 134 RNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRAAR 193

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              E+H  V+ S +++ + + NA++  Y+K   ++ AR L D++S +D V+++++ISGY 
Sbjct: 194 PLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYC 253

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               +++A+ +F +M       W A+ISG  QN   +  L+L   M A GV P    + S
Sbjct: 254 QVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVS 313

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           +    +    +  GKE+H   ++        NI++  A++D Y+K G +  A  VF R  
Sbjct: 314 VLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMP 373

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R  I W ++++ ++ +G   +++++F EML  G++P  VTF AVL+AC+HSGLV     
Sbjct: 374 ERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRL 433

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKP-SAKVWGALLYGA 353
           I  +M   +G++P  EHYA  +  L R R++ EA EF+  +P  + P +A  WGALL   
Sbjct: 434 ILESME-DHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGAC 492

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++EL + V + LF++EP N+G Y++++N+Y+ AG+WD+A RVR  MKE GL K   
Sbjct: 493 RLHGNIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQA 552

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLM 450
            SWIE       FVA D S  ++++IY +L +LL  M
Sbjct: 553 YSWIEVRSLKHVFVADDMSHCEADEIYEMLGKLLDHM 589



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 18/186 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V+W ++I+G+ Q G  +    LF  ML   V  P    +VSVL AC +   +  
Sbjct: 268 MPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGV-SPTTFALVSVLGACAKLGLVTR 326

Query: 61  GMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G E+H  ++   I  D   ++I NAL+ MY+KCG +  A A+   M ++D +S++++++G
Sbjct: 327 GKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTG 386

Query: 118 YMVHGFVEKAMDLFQVMK----RPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQAS 168
           +  +G  ++++ +F+ M     RP   T+ AV+     SGLV N R      ++  M+  
Sbjct: 387 FSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRL-----ILESMEDH 441

Query: 169 GVRPNA 174
           GV P A
Sbjct: 442 GVEPRA 447



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SWNSM+ G+S  G  ++  A+F EML + V RP  VT ++VL AC  S  +  
Sbjct: 372 MPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGV-RPTHVTFLAVLTACSHSGLVSN 430

Query: 61  G------MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G      ME H   +E   +      +AL        ++++ + L   +      S+ A+
Sbjct: 431 GRLILESMEDHG--VEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGAL 488

Query: 115 ISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGL 149
           +    +HG +E A ++ + + +  PG S    ++S +
Sbjct: 489 LGACRLHGNIELAEEVAEFLFKLEPGNSGRYVMLSNI 525


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 267/490 (54%), Gaps = 35/490 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW S+IAGYSQ G        + +ML S V+ PD  T  S+++AC    DI  
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVM-PDQFTFGSIIKACSSLGDIGL 59

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  V++S     +   NALI MY K   +  A  +   M+ +D +S+ ++I+G+  
Sbjct: 60  GRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQ 119

Query: 121 HGFVEKAMDLFQVM---KRPGLSTWNAVISGL---------------------------- 149
            G+  +A+  F+ M    RP L  WNA+I+G                             
Sbjct: 120 LGYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRDAIFFFEEMRCNADLVSWNAIL 179

Query: 150 ---VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206
              +++++ E V  L++ M  S  RP+ +T++++    +   +++ G ++H YA+K   +
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
            +  V   +ID YAK G L  A ++FD      ++ W+++I  YA  G   +A+ LF  M
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
               ++P+ VTF  VL+AC+H GLV++ W ++  M  ++GI P+ EH +CMV +L+RA  
Sbjct: 300 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 359

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           ++EA  F+ +M   P   VW  LL      G+V++GK   +++ +I+P N+  ++++ N+
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNI 419

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y+  G W++  R+R  MK+ G+ K+PG+SWIE    +  F  +D+   +  +IY +LE L
Sbjct: 420 YASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIYTMLEEL 479

Query: 447 LGLMREEGYV 456
           L  M + GYV
Sbjct: 480 LLQMLDAGYV 489


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 252/458 (55%), Gaps = 35/458 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ--SSDI 58
           MS RD+V+W ++I GYSQ    ++   L  EML    L+P+  T+ S+L+A     S+D+
Sbjct: 76  MSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIG-LKPNQFTLASLLKAASGVGSTDV 134

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
           + G ++H   +      ++++  A++ MYA+C  L+ A+ + D M  K+EVS        
Sbjct: 135 LQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVS-------- 186

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                                  WNA+I+G  +  + +    L   M    V+P   T S
Sbjct: 187 -----------------------WNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYS 223

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    +   +L+ GK +H   +K       +V   ++D YAK+G +  A++VFDR   R
Sbjct: 224 SVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKR 283

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W ++++ Y+ HG    A+  F EML   I P+ +TF  VL+AC+H+GL+D+    F
Sbjct: 284 DVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYF 343

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M  +Y ++P + HY  MV +L RA  +  A +F+S+MP+KP+A VWGALL    +  +
Sbjct: 344 DMMK-KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKN 402

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +ELG +  + +FE++    G ++++ N+Y+ AGRW++A +VR+ MKESG+ K P  SW+E
Sbjct: 403 MELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVE 462

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               +  FVA D +  +  +I+ + E++   ++E GYV
Sbjct: 463 MENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYV 500



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 180/367 (49%), Gaps = 46/367 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L+ C   + +  G  +H  ++ S  + DL + N L+ +YAKCG L YAR L DEMS +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           D V+++A+I+GY                                Q++R +  L L+ EM 
Sbjct: 80  DVVTWTALITGY-------------------------------SQHDRPQDALLLLPEML 108

Query: 167 ASGVRPNAVTISSIFSLFSHF--SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
             G++PN  T++S+    S    +++  G+++HG  ++  YD N+YV+ AI+D YA+   
Sbjct: 109 RIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHH 168

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           L  AQ +FD    ++ + W A+I+ YA  G   KA  LF+ ML   ++P   T+++VL A
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 285 CAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
           CA  G +++  W   +A+  ++G +        ++ + +++  I +A +   ++  K   
Sbjct: 229 CASMGSLEQGKW--VHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRL-AKRDV 285

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFE-----IEPENTGNYIIMANLYSQAGRWDEADR 398
             W ++L G S  G   LGK       E     I P N   ++ +    S AG  DE   
Sbjct: 286 VSWNSMLTGYSQHG---LGKVALQRFEEMLRTRIAP-NDITFLCVLTACSHAGLLDEGRH 341

Query: 399 VREQMKE 405
             + MK+
Sbjct: 342 YFDMMKK 348


>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
 gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
          Length = 438

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 153/430 (35%), Positives = 240/430 (55%), Gaps = 16/430 (3%)

Query: 32  MLNSPVLR-PDGVTVVSVLQACGQSSDIVFG----MEVHNFVIE---SHIKMDLWICNAL 83
           ML+SP    P+ VT+++VL AC  S          + VH  V++   SH    L +   L
Sbjct: 1   MLSSPAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSH----LLLSTCL 56

Query: 84  IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWN 143
           +  Y        A  L D M  +  V+Y+ +ISG M +G V  A ++F  M  P   +W 
Sbjct: 57  VRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWT 116

Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
           A+I G V+N RH+  +D  R M   GV P+ VT+ ++ S  +    L  G  +H   V+ 
Sbjct: 117 ALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQ 176

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             +RN+ +A ++ID YA+ G +  A++VF   + R+++ W ++I  +AA+G  + AV  F
Sbjct: 177 GLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHF 236

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
             M   G +PD VTFT VL+AC+H GL D+    ++ M  +YGI   +EHY C+V +L R
Sbjct: 237 EAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGR 296

Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
           + ++ EA   V+ MP++P+  V GALL G  + GDV + + +  HL E++P    NY+++
Sbjct: 297 SGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLL 356

Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           +N+Y+  G+WD A +VR  MK  GL K PG S +E  G +  FV+ D S  ++E+I    
Sbjct: 357 SNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEI---- 412

Query: 444 ERLLGLMREE 453
            ++LGL+  E
Sbjct: 413 SQMLGLLMHE 422



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR +VSWNSMI G++  G   +    F E +     +PD VT   VL AC        
Sbjct: 208 MRKRTVVSWNSMIVGFAANGRCADAVEHF-EAMRREGFKPDAVTFTGVLTACSHGGLTDE 266

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G+  ++ +   +    +M+ + C  ++ +  + G L+ A  ++  M  + +EV   A+++
Sbjct: 267 GLRYYDLMRAEYGIAARMEHYGC--VVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLA 324

Query: 117 GYMVHGFVEKAMDLFQ 132
           G  +HG V  A  L Q
Sbjct: 325 GCRMHGDVGMAEQLMQ 340


>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510 [Vitis vinifera]
 gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 238/417 (57%), Gaps = 6/417 (1%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++S+  ++A +   G + +  +LF  M  S     D       L++C  +     G  +H
Sbjct: 11  LLSYTKLLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIH 70

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V +  +  + ++  AL+ MY KC S+  AR L DE+  ++ V ++A+IS Y   G V 
Sbjct: 71  AHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVA 130

Query: 126 KAMDLFQVMK-RPGLSTWNAVISGL--VQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            A+ LF+VM   P  ST+NA+ISGL  +++   +A L   R M   G++ N +T+ ++  
Sbjct: 131 DALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKA-LSFYRRMGEVGLKQNLITLLALLP 189

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL 240
                + L   KEIHGYA++N  D + ++ + +++ Y + G +  +Q VF       R +
Sbjct: 190 ACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQCVFQSISMSERDV 249

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+++ISAYA HGDA  A+  F +M    +QPD +TF  VL AC+H+GL D+A   F  
Sbjct: 250 VAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGR 309

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++ S +HY+C+V  LSRA R+ EA E +  MPVK +AK WGALL      G+VE
Sbjct: 310 MCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKSTAKTWGALLGACRTYGEVE 369

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           L +     LFE+EP+N  NY+++A +Y+  GR +EA R+R +M E G+   PG SW+
Sbjct: 370 LAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQRMRREMNEMGVKAAPGSSWV 426



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 123/315 (39%), Gaps = 41/315 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           +  R+IV WN+MI+ Y+  G   +   LF  M   P                        
Sbjct: 108 IPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALS 167

Query: 38  ---------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
                    L+ + +T++++L AC   + +    E+H + I + I     + + L+  Y 
Sbjct: 168 FYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYG 227

Query: 89  KCGSLDYARALLD--EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           +CG +  ++ +     MS++D V++S++IS Y +HG    A++ F+ M+   +       
Sbjct: 228 RCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITF 287

Query: 147 SGLVQNNRHEAVLD-----LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE-IHGYA 200
            G+++   H  + D       R  +  GV  ++   S +    S    L    E I G  
Sbjct: 288 LGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMP 347

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK+   +          TY +      A R     +  +   +  +   YA+ G   +A 
Sbjct: 348 VKST-AKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQ 406

Query: 261 SLFNEMLNNGIQPDP 275
            +  EM   G++  P
Sbjct: 407 RMRREMNEMGVKAAP 421


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 252/456 (55%), Gaps = 31/456 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN+MI G+ Q   Y++    F+ +L   +   D V+  SV  AC  + ++ F
Sbjct: 191 MPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEF 250

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH   ++  +   ++I N+L  MY KCG  +    L      +D V           
Sbjct: 251 GKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVV----------- 299

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TWN +I   V N+ +E   +    M+  G  P+  + SS+
Sbjct: 300 --------------------TWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSV 339

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               ++ + L  G  IH   +++ + +N+ VA+++I  YAK G L  A ++F+  + R++
Sbjct: 340 LHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNV 399

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTAII+A   HG A+  V LF +ML  GI+PD +TF +VLSAC+H+G V++ +  FN+
Sbjct: 400 VCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNS 459

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P  EHYAC+V +LSRA  +  A  F+  MP+KP A VWGALL       ++ 
Sbjct: 460 MIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLI 519

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +GK V   LF++EP+N GNY+++ N+ ++ G  +EAD VR +M+  G+ K PG SWI+  
Sbjct: 520 MGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIK 579

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
                F   D S +K+++IY +LE+L  L++++GYV
Sbjct: 580 NSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYV 615



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 195/438 (44%), Gaps = 72/438 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           +++VSW S+I   ++  F    KAL  F  M  S V  P+  T  +VL AC  ++  V G
Sbjct: 93  KNVVSWTSLITQLTR--FKRPFKALTFFNHMRRSGVY-PNHYTFSAVLSACTDTTASVHG 149

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            ++H+ V +     ++++ +AL+ MYAKC  +  A  + +EM  ++ VS++ +I G++ +
Sbjct: 150 EQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQN 209

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
              ++A+  F+ +    L+                                + V+ SS+F
Sbjct: 210 KLYDQAIFFFKTLLLENLTAL------------------------------DEVSFSSVF 239

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           S  ++  NL+ GK++HG A+K      +Y+  ++ D Y K G  +   ++F     R ++
Sbjct: 240 SACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVV 299

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-------------- 287
            W  +I AY  + +   A + F  M   G  PD  ++++VL +CA+              
Sbjct: 300 TWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQI 359

Query: 288 --SGLVDKAWDIFNAMSGQYGIQPSV------------EHYACMVGVLSRARR------I 327
             SG V K   + +++   Y    S+             +  C   +++  ++      +
Sbjct: 360 IRSGFV-KNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWV 418

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMAN 385
            E  E + +  +KP    + ++L   S +G VE G F  + + ++     G  +Y  + +
Sbjct: 419 VELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVD 478

Query: 386 LYSQAGRWDEADRVREQM 403
           L S+AG  D A R  E M
Sbjct: 479 LLSRAGELDRAKRFIELM 496



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 34/279 (12%)

Query: 12  MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES 71
           M A YS+   +            +P L P  +T ++ L  C ++S      ++H+ +I +
Sbjct: 1   MKAVYSKLPLHPNLSFFKSHYHQTPFLHP--LTSLNSLLNCSRTSK--HATQIHSQLITT 56

Query: 72  HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131
            +    ++ N L+ +YAKCGS+D    L     D  +                       
Sbjct: 57  ALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSK----------------------- 93

Query: 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191
                  + +W ++I+ L +  R    L     M+ SGV PN  T S++ S  +  +   
Sbjct: 94  ------NVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASV 147

Query: 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
            G+++H    K+ +   ++V +A++D YAK   +  A++VF+    R+L+ W  +I  + 
Sbjct: 148 HGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFL 207

Query: 252 AHGDASKAVSLFNE-MLNNGIQPDPVTFTAVLSACAHSG 289
            +    +A+  F   +L N    D V+F++V SACA++G
Sbjct: 208 QNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAG 246


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 253/453 (55%), Gaps = 8/453 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           DI  +N++I   S    + +        +    LRPD  +    L+A  + S I  G ++
Sbjct: 41  DIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQL 100

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGS--LDYARALLD--EMSDKDEVSYSAIISGYMV 120
           H+  I   +  DL +  A + MY+  GS  +  AR + D   MS  D   ++A+++GY  
Sbjct: 101 HSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAK 160

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG +  A DLF+ M +  + +W A+I+G  Q NR    + L R MQ   V P+ + +   
Sbjct: 161 HGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVA 220

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            +  +    L+ G+ I  Y  +      NI +  A+ID YAK+G +  A +VF+    ++
Sbjct: 221 LTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKT 280

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I WT +I+  A HG  ++A+ +F+ M    ++P+ +TF A+LSAC+H GLV      FN
Sbjct: 281 IITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFN 340

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M  +YGI+P +EHY CM+ +L RA  + EA   +++MP +P+A +WG+LL   +  GD 
Sbjct: 341 RMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDP 400

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+    HL E+EP+N+GNY +++N+Y+  GRW+E+  VR+ M ++G+ K+PG S IE 
Sbjct: 401 ELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEV 460

Query: 420 SGGLQSFVAKDTSGDKSEQIYLIL---ERLLGL 449
           +  +  F+A + S  + ++I  +L    R LGL
Sbjct: 461 NNRVHEFIAGEISHSQFDRIQEVLSKINRQLGL 493



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 39/287 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+++SW ++I GY+Q     +  ALFR M    V  PD + ++  L AC +   +  
Sbjct: 174 MPQRNVISWTALITGYAQANRPHDAIALFRRMQLENV-EPDEIAMLVALTACARLGALEL 232

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           G  + +++     +  ++ + NALI MYAK G +  A  + + M+ K  ++++ +I+G  
Sbjct: 233 GEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLA 292

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
           +HG   +A+++F  M+R                               + V+PN +T  +
Sbjct: 293 LHGLGTEALEMFSRMER-------------------------------ARVKPNDITFIA 321

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           I S  SH   ++ G+      + +RY  +  I     +ID   + G L  AQ +  +   
Sbjct: 322 ILSACSHVGLVQTGRWYFNRMI-SRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPF 380

Query: 238 R-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
             + +IW ++++A   HGD          +L   ++PD     A+LS
Sbjct: 381 EPNAVIWGSLLAACNTHGDPELGELALQHLLE--LEPDNSGNYALLS 425


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 245/436 (56%), Gaps = 2/436 (0%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++  + ++I G+   G Y E   L+  ML+  +L PD   + S+L+ACG    +  G EV
Sbjct: 111 NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESIL-PDNYLMASILKACGSQLALREGREV 169

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H+  ++     +  +   ++ +Y KCG L  AR + +EM + D V+ + +IS Y   G V
Sbjct: 170 HSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLV 228

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
           E+A  +F  ++R     W A+I G V+N      L+  R MQ   VRPN  TI  + S  
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSAC 288

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           S    L+ G+ +H Y  K   + N++V  A+I+ Y++ G +  AQ VFD  K R +I + 
Sbjct: 289 SQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYN 348

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
            +IS  + +G + +A+ LF  M+   ++P  VTF  VL+AC+H GLVD  ++IF++M+  
Sbjct: 349 TMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARD 408

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y ++P +EHY CMV +L R  R+ EA + +  M + P   + G LL    +  ++ELG+ 
Sbjct: 409 YRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQ 468

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
           V   L +    ++G Y++++++Y+ +G+W EA +VR +MKE+G+ K PG S IE +  + 
Sbjct: 469 VAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIH 528

Query: 425 SFVAKDTSGDKSEQIY 440
            F+  D    + E+IY
Sbjct: 529 EFLLGDLRHPQKERIY 544



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 169/409 (41%), Gaps = 59/409 (14%)

Query: 41  DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALL 100
           D   ++S+LQ   +S  I   + +H  +I +    D ++   L+   +KC ++DYA  + 
Sbjct: 48  DQKQIISLLQ---RSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 104

Query: 101 DEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
               + +   Y+A+I G++  G   +A+ L+  M    +   N +++ +++    +  L 
Sbjct: 105 QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 164

Query: 161 LVREMQAS----GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
             RE+ +     G   N +    I  L+     L   + +           ++  +T +I
Sbjct: 165 EGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF-----EEMPEDVVASTVMI 219

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
            +Y+  G +  A  VF R + +  + WTA+I  +  + + ++A+  F  M    ++P+  
Sbjct: 220 SSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEF 279

Query: 277 TFTAVLSACA-----------HS------------------------GLVDKAWDIFNAM 301
           T   VLSAC+           HS                        G +D+A  +F+ M
Sbjct: 280 TIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEM 339

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGD 358
             +      V  Y  M+  LS   +  +A E    M    ++P+   +  +L   S  G 
Sbjct: 340 KDR-----DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGL 394

Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           V+ G  +   +   + +EP+   +Y  M +L  + GR +EA  +   MK
Sbjct: 395 VDFGFEIFHSMARDYRVEPQ-IEHYGCMVDLLGRVGRLEEAYDLIRTMK 442



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++++N+MI+G S  G   +   LFR M+    LRP  VT V VL AC     + F
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRR-LRPTNVTFVGVLNACSHGGLVDF 397

Query: 61  GMEV-HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
           G E+ H+   +  ++  +     ++ +  + G L+ A  L+  M    D +    ++S  
Sbjct: 398 GFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 457

Query: 119 MVHGFVE 125
            +H  +E
Sbjct: 458 KMHKNLE 464


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 239/433 (55%), Gaps = 32/433 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +SK  + +WN++++GY Q   +++   LFR M +  V +PD  T+  +L  C +   +  
Sbjct: 378 ISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNV-QPDRTTLAVILSTCSRLGILEL 436

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  ++  +  D+++ + LI MY+KCG +  A+ + + M+++D V           
Sbjct: 437 GKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVV----------- 485

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++ +E   D  ++M+ +G+ P   + +S+
Sbjct: 486 --------------------CWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASM 525

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +  S++  G++IH   +K+ YD+N+YV +++ID YAK G +  A+  F+    +++
Sbjct: 526 INSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNI 585

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVD+A   FN+
Sbjct: 586 VAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNS 645

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P VEHY C++  L RA R +E    + KMP K  A +W  LL    +  + E
Sbjct: 646 MESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHHNAE 705

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F   HLF ++P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SW+   
Sbjct: 706 LGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHK 765

Query: 421 GGLQSFVAKDTSG 433
            G ++F+  D  G
Sbjct: 766 DGARAFMVADDLG 778



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 172/376 (45%), Gaps = 48/376 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSWN++IA  ++     E   ++R ML    L P   T+ SVL ACG  + +  
Sbjct: 102 MPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEG-LAPTNFTLASVLSACGAVAALDD 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H   ++  +  + ++ N L+GMY KCGS+  A  L D MS  +EVS++A++ G   
Sbjct: 161 GRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQ 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G V+ A+ LF  M R                               S +R + V +SS+
Sbjct: 221 SGAVDDALRLFARMSR-------------------------------SAIRVDPVAVSSV 249

Query: 181 FSL--------FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
                      ++    ++  + IH   V+  +D + +V  ++ID YAK   +  A +VF
Sbjct: 250 LGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVF 309

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           +     S++ W  +++ Y   G   +A+ + + M  +G +P+ VT++ +L++C  +  V 
Sbjct: 310 ESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVP 369

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGAL 349
            A  +F+ +S     +PSV  +  ++    +     +  E   +M    V+P       +
Sbjct: 370 SARAMFDKIS-----KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVI 424

Query: 350 LYGASISGDVELGKFV 365
           L   S  G +ELGK V
Sbjct: 425 LSTCSRLGILELGKQV 440



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 106/221 (47%)

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
           V+ + +  D ++ N L+ +Y+  G   +A      +   +  SY+A IS     G +  A
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
            DL   M      +WN VI+ + +++     L++ R M   G+ P   T++S+ S     
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
           + L  G+  HG AVK   D N +V   ++  Y K G +  A R+FD     + + +TA++
Sbjct: 156 AALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMM 215

Query: 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
              A  G    A+ LF  M  + I+ DPV  ++VL ACA +
Sbjct: 216 GGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQA 256



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           N+Y   A I    + G L  A+ +  R   R+ + W  +I+A A      +A+ ++  ML
Sbjct: 75  NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGML 134

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
             G+ P   T  +VLSAC     +D      + ++ + G+  +      ++G+ ++   +
Sbjct: 135 QEGLAPTNFTLASVLSACGAVAALDDGRRC-HGLAVKVGLDGNQFVENGLLGMYTKCGSV 193

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           ++A      M   P+   + A++ G + SG V+
Sbjct: 194 ADAVRLFDWMS-SPNEVSFTAMMGGLAQSGAVD 225


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 252/471 (53%), Gaps = 40/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V W +MI  Y Q     +   LFR+M     L  D +T +SV  A GQ  D   
Sbjct: 193 MLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFL-GDEITAISVASAVGQLGDGRM 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            + VH + + +    D+ + N+++GMYAKCG+++ AR + D M +++ +S          
Sbjct: 252 AISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGIS---------- 301

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN+++SG  QN R    L L  +MQAS   PN VT   +
Sbjct: 302 ---------------------WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIM 340

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD--RFKGR 238
            S  S+  +   G+++H + + ++ D +  +  AI+D Y K G L  A  +F+      R
Sbjct: 341 VSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGER 400

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +  W  +IS Y  HG   +A+ LF+ M   G++P+ +TFT++LSAC+H+GL+D+    F
Sbjct: 401 DVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCF 460

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M+ +  ++P ++HYACMV +L RA  ++EA   + K+P +PS +VWGALL    I G+
Sbjct: 461 ADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 519

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            ELG+   ++LF++EPE+TG Y++M+N+Y+ + +W E + VR+ MK  GL K    S IE
Sbjct: 520 TELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 579

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F   D S     ++Y  +E L   M+  GYV     +L +VE E
Sbjct: 580 FGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE 630



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 200/451 (44%), Gaps = 78/451 (17%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           N+M+  Y+  G   E   L+  M    V   +  T   VL+ C      VFG  VH  V+
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGV-GVNNFTYPFVLKVCASELGAVFGEVVHGQVV 159

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
            +    DL++  AL+ MYAKCG +  A  + D M  +D V ++A+I+             
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMIT------------- 206

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           L++  +RP                     L L R+MQ  G   + +T  S+ S      +
Sbjct: 207 LYEQAERP------------------LKALMLFRKMQEEGFLGDEITAISVASAVGQLGD 248

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
            +    +HGYAV N +  ++ V  +I+  YAK G +  A+ VFDR + R+ I W +++S 
Sbjct: 249 GRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSG 308

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDI- 297
           Y  +G  + A+SLFN+M  +   P+PVT   ++SAC+           H+ ++    DI 
Sbjct: 309 YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDID 368

Query: 298 ---FNAMSGQY----GIQPSVEHY-ACMVG---VLSRARRIS---------EATEFVSKM 337
               NA+   Y     +  +VE +  C +G   V S    IS         EA E  S+M
Sbjct: 369 TTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRM 428

Query: 338 P---VKPSAKVWGALLYGASISGDVELGK--FVCDHLFEIEPENTGNYIIMANLYSQAGR 392
               V+P+   + ++L   S +G ++ G+  F       + PE   +Y  M ++  +AG 
Sbjct: 429 QVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPE-MKHYACMVDMLGRAGF 487

Query: 393 WDEADRVREQMKESGLAKIPGRSWIECSGGL 423
            +EA R+        + KIP R   E  G L
Sbjct: 488 LNEAFRL--------IKKIPSRPSDEVWGAL 510



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 35/280 (12%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           LI +Y+K G L  AR L D           A                       P     
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQA-----------------------PNSFLC 100

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           N ++       R    +DL   MQ  GV  N  T   +  + +       G+ +HG  V+
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
             +  +++V  A++D YAK G +  A  VFDR   R ++ WTA+I+ Y       KA+ L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSG-----LVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           F +M   G   D +T  +V SA    G     +    + + N   G   +  S+      
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAK 280

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
            G + RAR + +  E       + +   W ++L G + +G
Sbjct: 281 CGNVERARLVFDRME-------ERNGISWNSMLSGYTQNG 313


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 256/471 (54%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++VSW +MI+ YSQ G   E   +F EM+ S   +P+  T  +VL +C ++S +  
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG-KPNEFTFATVLTSCIRASGLGL 171

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  +++ +    +++ ++L+ MYAK G +  AR                       
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAR----------------------- 208

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                   ++F+ +    + +  A+I+G  Q    E  L++   + + G+ PN VT +S+
Sbjct: 209 --------EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASL 260

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S  + L  GK+ H + ++        +  ++ID Y+K G L  A+R+FD    R+ 
Sbjct: 261 LTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTA 320

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I W A++  Y+ HG   + + LF  M +   ++PD VT  AVLS C+H  + D   +IF+
Sbjct: 321 ISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFD 380

Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
            M +G+YG +P  EHY C+V +L RA RI EA EF+ +MP KP+A V G+LL    +   
Sbjct: 381 GMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLS 440

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V++G+ V   L EIEPEN GNY+I++NLY+ AGRW + + VR  M +  + K PGRSWI+
Sbjct: 441 VDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQ 500

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               L  F A D +  + E++   ++ +   M++ GYV     +L +V+EE
Sbjct: 501 HEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEE 551



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 159/330 (48%), Gaps = 45/330 (13%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           ++L AC     +  G  VH  +I++      ++   L+  Y KC  L+ AR +LDEM +K
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
           + VS++A+IS Y   G   +A+ +F                                EM 
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFA-------------------------------EMM 145

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            S  +PN  T +++ +     S L  GK+IHG  VK  YD +I+V ++++D YAK G + 
Sbjct: 146 RSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIK 205

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A+ +F+    R ++  TAII+ YA  G   +A+ +F+ + + G+ P+ VT+ ++L+A +
Sbjct: 206 EAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALS 265

Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----MVGVLSRARRISEATEFVSKMPVKPS 342
              L+D         +  + ++  +  YA     ++ + S+   +S A      MP + +
Sbjct: 266 GLALLDHG-----KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER-T 319

Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEI 372
           A  W A+L G S  G   LG+ V + LF +
Sbjct: 320 AISWNAMLVGYSKHG---LGREVLE-LFRL 345


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 161/499 (32%), Positives = 260/499 (52%), Gaps = 39/499 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  +N++I G S          LF EM    V  PD  +   +L+A      +  G+++
Sbjct: 69  DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS-------- 116
           H   +   +   L++   LI MYA+C  L +AR + DEM + + V+++AI++        
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV 188

Query: 117 -----------------------GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
                                  GY   G ++ A ++F  M      +W+ +I G   N 
Sbjct: 189 KDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNG 248

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
                    RE++  G+RPN V+++ + S  +     + G+ +HG+  K+ + + I V  
Sbjct: 249 NFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNN 308

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           A+IDTY+K G L  A+ VFD    RS + WTA+I+  A HG   +A+ LFNEM  + I+P
Sbjct: 309 ALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKP 368

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D +TF ++L AC+H+GLVD     F+ M   YGI+P +EHY CMV +  RA ++ +A +F
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDF 428

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           V +MP+ P+  VW  LL   SI G++ L   V   L E++PEN+G++++++N+Y+ AG+W
Sbjct: 429 VCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKW 488

Query: 394 DEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR-- 451
            +   +R  M    L K PG S IE +  + SFVA +   D + + +  L  ++  +R  
Sbjct: 489 KDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIE 548

Query: 452 -----EEGYVLLD-EVEEE 464
                E G VL D EVEE+
Sbjct: 549 GGYVPEVGSVLHDIEVEEK 567



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 42/261 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSW++MI G++  G + +  A FRE+     +RP+ V++  VL AC Q+    F
Sbjct: 229 MPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREG-MRPNEVSLTGVLSACAQAGAFEF 287

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H FV +S     + + NALI  Y+KCG+LD AR + D M  +  VS++A+I+G  +
Sbjct: 288 GRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAM 347

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+ E+A+ LF                                EM+ S ++P+++T  SI
Sbjct: 348 HGYGEEAIRLFN-------------------------------EMEESNIKPDSITFISI 376

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
               SH   +  G       V N Y  +  I     ++D Y + G L   Q+ +D     
Sbjct: 377 LYACSHAGLVDLGCSYFSRMV-NTYGIEPVIEHYGCMVDLYGRAGKL---QQAYDFVCQM 432

Query: 239 SL----IIWTAIISAYAAHGD 255
            +    I+W  ++ A + HG+
Sbjct: 433 PISPNDIVWRTLLGACSIHGN 453



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 152/381 (39%), Gaps = 85/381 (22%)

Query: 92  SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP-------------- 137
           SL YAR L  ++ + D   Y+ +I G         A+ LF  M+R               
Sbjct: 54  SLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL 113

Query: 138 ----------------------GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
                                 GL +   V + L+      A L   R++    + PN V
Sbjct: 114 KAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIV 173

Query: 176 TISSIFSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
             ++I +       +K  +++     ++N    NI +A      Y K G L  A+ VF +
Sbjct: 174 AWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLA-----GYTKAGELQLAREVFMK 228

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS------ 288
              +  + W+ +I  +A +G+ + A + F E+   G++P+ V+ T VLSACA +      
Sbjct: 229 MPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG 288

Query: 289 ----GLVDKA-----WDIFNAMSGQYG---------------IQPSVEHYACMVGVLSRA 324
               G V+K+       + NA+   Y                ++ S   +  M+  ++  
Sbjct: 289 RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMH 348

Query: 325 RRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHL------FEIEPE 375
               EA    ++M    +KP +  + ++LY  S +G V+LG   C +       + IEP 
Sbjct: 349 GYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLG---CSYFSRMVNTYGIEPV 405

Query: 376 NTGNYIIMANLYSQAGRWDEA 396
              +Y  M +LY +AG+  +A
Sbjct: 406 -IEHYGCMVDLYGRAGKLQQA 425


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 157/495 (31%), Positives = 254/495 (51%), Gaps = 65/495 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           M +RD VSWN++I+ Y+  G ++E   LF  M    V                       
Sbjct: 243 MPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGA 302

Query: 38  ----------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
                     +  D + +V  L AC     I  G E+H   + +   +   + NALI MY
Sbjct: 303 LQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMY 362

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           ++C  L                           H F+     LF   +  GL TWNA++S
Sbjct: 363 SRCRDLG--------------------------HAFI-----LFHRTEEKGLITWNAMLS 391

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR-YD 206
           G    +R+E V  L REM   G+ PN VTI+S+  L +  +NL+ GKE H Y +K++ ++
Sbjct: 392 GYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFE 451

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
             + +  A++D Y+++G +  A++VFD    R  + +T++I  Y   G+    + LF EM
Sbjct: 452 EYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEM 511

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
               I+PD VT  AVL+AC+HSGLV +   +F  M   +GI P +EHYACM  +  RA  
Sbjct: 512 CKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGL 571

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           +++A EF++ MP KP++ +W  LL    I G+ E+G++    L E++P+++G Y+++AN+
Sbjct: 572 LNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANM 631

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y+ AG W +   VR  M+  G+ K PG +W++       F+  D+S   + +IY +++ L
Sbjct: 632 YAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDVGSEFSPFLVGDSSNPHASEIYPLMDGL 691

Query: 447 LGLMREEGYVLLDEV 461
             LM++ GYV  +E+
Sbjct: 692 NELMKDAGYVRSEEL 706



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 7/377 (1%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D + WN +I+ Y + GF+ E   +++ MLN  +  PD  T  SVL+ACG+S D   G+EV
Sbjct: 146 DPLHWNLLISAYVRNGFFVEALCVYKNMLNKKI-EPDEYTYPSVLKACGESLDFNSGLEV 204

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  +  S ++  L++ NAL+ MY + G L+ AR L D M  +D VS++ IIS Y   G  
Sbjct: 205 HRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIW 264

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           ++A  LF  M+  G+      WN +  G + +      L L+ +M+ S +  +A+ +   
Sbjct: 265 KEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTS-IHLDAIAMVVG 323

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  SH   +K GKEIHG+AV+  +D    V  A+I  Y++   L  A  +F R + + L
Sbjct: 324 LNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGL 383

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A++S YA      +   LF EML  G++P+ VT  +VL  CA    +    +    
Sbjct: 384 ITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCY 443

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL-YGASISGDV 359
           +      +  +  +  +V + SR+ R+ EA +    +  +        +L YG    G+ 
Sbjct: 444 IMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGET 503

Query: 360 ELGKFVCDHLFEIEPEN 376
            L  F      EI+P++
Sbjct: 504 TLKLFEEMCKLEIKPDH 520



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 107/265 (40%), Gaps = 35/265 (13%)

Query: 37  VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96
           +L P G    S+L AC     +  G ++H  VI   +  +  + + L+  Y     L  A
Sbjct: 80  LLHPIG----SLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDA 135

Query: 97  RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
           + + +  +  D + ++ +IS Y+ +GF  +A+ ++                         
Sbjct: 136 QFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVY------------------------- 170

Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216
                 + M    + P+  T  S+        +   G E+H     +  + +++V  A++
Sbjct: 171 ------KNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALV 224

Query: 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276
             Y + G L  A+ +FD    R  + W  IIS YA+ G   +A  LF  M   G++ + +
Sbjct: 225 SMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVI 284

Query: 277 TFTAVLSACAHSGLVDKAWDIFNAM 301
            +  +   C HSG    A  + + M
Sbjct: 285 IWNTIAGGCLHSGNFRGALQLISQM 309



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 40/234 (17%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
           I S+    +HF +L  GK++H   +    D+N  + + +++ Y     L  AQ V +   
Sbjct: 84  IGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSN 143

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
               + W  +ISAY  +G   +A+ ++  MLN  I+PD  T+ +VL AC  S   +   +
Sbjct: 144 TLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLE 203

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +  +                                      ++ S+  W   ++ A +S
Sbjct: 204 VHRS--------------------------------------IEASSMEWSLFVHNALVS 225

Query: 357 GDVELGKF-VCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
                GK  +  HLF+  P  ++ ++  + + Y+  G W EA ++   M+E G+
Sbjct: 226 MYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGV 279


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 242/469 (51%), Gaps = 45/469 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+ SWN+MI+  +Q G   E + LF  M       P+   V               
Sbjct: 130 MPLKDVASWNTMISALAQVGLMGEARRLFSAM-------PEKNCVS-------------- 168

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                            W  +A++  Y  CG LD A         +  ++++A+I+GYM 
Sbjct: 169 -----------------W--SAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMK 209

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A  LFQ M    L TWNA+I+G V+N R E  L L R M  +GV+PNA++++S+
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSV 269

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+ S L+ GK++H    K     +    T+++  Y+K G L  A  +F +   + +
Sbjct: 270 LLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDV 329

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS YA HG   KA+ LF+EM   G++PD +TF AVL AC H+GLVD     FN 
Sbjct: 330 VCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNT 389

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI+   EHYACMV +L RA ++SEA + +  MP KP   ++G LL    I  ++ 
Sbjct: 390 MRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLN 449

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +F   +L E++P     Y+ +AN+Y+   RWD    +R  MK++ + KIPG SWIE +
Sbjct: 450 LAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEIN 509

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             +  F + D    +   I+  L+ L   M+  GYV     +L +V EE
Sbjct: 510 SVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEE 558



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 14/199 (7%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH-GDASKAVSLFN 264
           + N+  +  +I +Y + G +  A RVF+  K +S + W +I++A+A   G    A  LF 
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFE 97

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           ++     QP+ V++  +L+   H   V  A   F++M  +      V  +  M+  L++ 
Sbjct: 98  KI----PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK-----DVASWNTMISALAQV 148

Query: 325 RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384
             + EA    S MP K     W A++ G    GD++      +  +     +   +  M 
Sbjct: 149 GLMGEARRLFSAMPEKNCVS-WSAMVSGYVACGDLDAA---VECFYAAPMRSVITWTAMI 204

Query: 385 NLYSQAGRWDEADRVREQM 403
             Y + GR + A+R+ ++M
Sbjct: 205 TGYMKFGRVELAERLFQEM 223


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 268/536 (50%), Gaps = 74/536 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSW ++IAG  + G+ +E  A F +M    V   D  T  S L+AC  S  + +
Sbjct: 129 MPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKV-GCDTYTFSSALKACADSGALNY 187

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD------------- 107
           G E+H   ++       ++ N L  MY KCG LDY   L + M+ +D             
Sbjct: 188 GREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQ 247

Query: 108 ----------------------EVSYSAIISGYMVHGFVE-------------------- 125
                                 E +++A+ISG    G +E                    
Sbjct: 248 IGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSV 307

Query: 126 ---------------KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
                           A  +FQ + R  + +W+ +ISG  Q    E   D +  M+  G 
Sbjct: 308 ANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGP 367

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           RPN    +S+ S+  + + L+ GK++H + +    ++N  V +A+I+ Y+K G +  A +
Sbjct: 368 RPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASK 427

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           +FD  +  +++ WTA+I+ YA HG + +A+ LF ++   G++PD VTF AVL+AC+H+GL
Sbjct: 428 IFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGL 487

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           VD  +  FN++S  + I PS +HY CM+ +L RA R+++A   +  MP +    VW  LL
Sbjct: 488 VDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLL 547

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
               I GDV+ GK   + + +++P     +I +AN+Y+  G+W EA  VR+ MK  G+ K
Sbjct: 548 RACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVK 607

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLG---LMREEGYVLLDEVEE 463
            PG SWI+    + +FV+ D S  + E IY +L+ L     +  +E   LL+EV+E
Sbjct: 608 EPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLLASQAEMHMQEMDFLLNEVQE 663



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 184/437 (42%), Gaps = 67/437 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SW ++I+GY  G    E  +LF +M   P L  D   +   L+ACG +  + F
Sbjct: 27  MLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSF 86

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + +++     +++ +AL+ MY K G +D    +  EM  ++ VS++AII+G + 
Sbjct: 87  GESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVR 146

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G+ ++A+  F                                +M    V  +  T SS 
Sbjct: 147 AGYNKEALAYFS-------------------------------DMWIQKVGCDTYTFSSA 175

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L  G+EIH   +K  +    +VA  +   Y K G L    R+F+    R +
Sbjct: 176 LKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDV 235

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-------------- 286
           + WT II +    G    AV  F  M    + P+  TF AV+S CA              
Sbjct: 236 VSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAH 295

Query: 287 --HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------E 329
               GLVD +  + N++   Y     ++  + +   LSR   IS               E
Sbjct: 296 VIRRGLVD-SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEE 354

Query: 330 ATEFVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMAN 385
           A +++S M     +P+   + ++L        +E GK +  H+  +  E NT     + N
Sbjct: 355 AFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALIN 414

Query: 386 LYSQAGRWDEADRVREQ 402
           +YS+ G   EA ++ ++
Sbjct: 415 MYSKCGSIKEASKIFDE 431



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 32/218 (14%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-KRPGL 139
           N ++    K G L+ AR L D+M  +DE+S++ IISGY+      +A+ LF  M   PGL
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
                          H     L   ++A G     + +S  F           G+ +HGY
Sbjct: 65  ---------------HMDPFILSLALKACG-----LNMSVSF-----------GESLHGY 93

Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
           +VK  +  +++V +A++D Y K G +     VF     R+++ WTAII+     G   +A
Sbjct: 94  SVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEA 153

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           ++ F++M    +  D  TF++ L ACA SG ++   +I
Sbjct: 154 LAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI 191



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQP 273
           ++    KTG L+ A+++FD+   R  I WT IIS Y    + ++A+SLF++M +  G+  
Sbjct: 7   VLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHM 66

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           DP   +  L AC  +  V    +  +  S +     SV   + +V +  +  ++ E    
Sbjct: 67  DPFILSLALKACGLNMSVSFG-ESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIV 125

Query: 334 VSKMPVKPSAKVWGALLYGASISG 357
             +MP++     W A++ G   +G
Sbjct: 126 FKEMPLRNVVS-WTAIIAGLVRAG 148


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 257/452 (56%), Gaps = 2/452 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ +SW++MIA YSQ G+ EE   LF +M+     +P+       L A      +  
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEG-FKPNISCFACTLSALASLRALSA 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H  V +  I  D++I ++LI +Y KCG  D  R + D + +K+ V +++++ GY +
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G +E+  +LF+++      +W  +I+G ++N + E VL++   +  SG  PN  T SS+
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  ++L  G  +HG  +K     +I+V TA+ D YAK G +  +++VF+R   ++ 
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNE 514

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           I WT +I   A  G A +++ LF EM     + P+ +   +VL AC+H GLVDK    FN
Sbjct: 515 ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFN 574

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M   YGI+P  +HY C+V +LSR+ R+ EA EF+  +P +P A  W ALL G     D 
Sbjct: 575 SMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDE 634

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ++ +     L+++   N+  Y++++N+Y+ AGRW +   +R+ M+E GL K  G SW+E 
Sbjct: 635 KIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEV 694

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
              + SF ++D S  +S +IY  L+ L   M+
Sbjct: 695 RNQVHSFYSEDGSHSQSNEIYGTLQLLRSEMK 726



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 183/385 (47%), Gaps = 34/385 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +++VSW + I+G+ + G   E   LF  +L S V RP+ VT  SV++ACG+  D   GM 
Sbjct: 147 QNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV-RPNDVTFTSVVRACGELGDFGLGMS 205

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +   V+++  +  L + N+LI +  + G +D AR + D M  +D VS++AI+  Y+  G 
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + +A  +F  M      +W+A+I+   Q+   E  L L  +M   G +PN    +   S 
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  G  IHG+  K   D+++++ +++ID Y K G     + VFD    ++++ W
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 244 TAIISAYAAHG-------------------------------DASKAVSLFNEMLNNGIQ 272
            +++  Y+ +G                                  K + +FN +L +G  
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+  TF++VL ACA    +DK  ++   +  + GIQ  +     +  + ++   I  + +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKII-KLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 333 FVSKMPVKPSAKVWGALLYGASISG 357
              +MP K     W  ++ G + SG
Sbjct: 505 VFERMPEKNEIS-WTVMIQGLAESG 528



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 11/320 (3%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           DL + N +I  Y + G+L  AR L DEM +++EVS+SA+ISG M +G VE++M  F+   
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
              + +W A ISG V+N  +   L L   +  SGVRPN VT +S+        +   G  
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           I G  VK  ++  + V+ ++I    + G +  A+RVFDR + R ++ WTAI+ AY   GD
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315
             +A  +F+EM     + + ++++A+++  + SG  ++A  +F+ M  Q G +P++  +A
Sbjct: 266 LREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMV-QEGFKPNISCFA 320

Query: 316 CMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
           C +  L+  R +S        V+K+ +     +  +L+      G  + G+ V D + E 
Sbjct: 321 CTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILE- 379

Query: 373 EPENTGNYIIMANLYSQAGR 392
             +N   +  M   YS  GR
Sbjct: 380 --KNVVCWNSMVGGYSINGR 397



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 122/317 (38%), Gaps = 79/317 (24%)

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
           R  A T  S+   FS+   +  G  +H + +K  +    Y+A  ++  Y          +
Sbjct: 18  RAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQ 77

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM----------LNNGI--------- 271
           +   F G  L++   +ISAY   G+  +A  LF+EM          L +G+         
Sbjct: 78  IVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEES 137

Query: 272 ----QPDP----VTFTAVLSACAHSGLVDKAWDIF----------NAMS----------- 302
               + +P    V++TA +S    +GL  +A  +F          N ++           
Sbjct: 138 MWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGEL 197

Query: 303 GQYGIQPSV---------EHY----------ACMVGVLSRARRISEATEFVSKMPVKPSA 343
           G +G+  S+         EHY          +  +G +  ARR+ +  E       K   
Sbjct: 198 GDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME-------KRDV 250

Query: 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
             W A+L     +GD+   + + D   E+   N  ++  M   YSQ+G  +EA ++  +M
Sbjct: 251 VSWTAILDAYVETGDLREARRIFD---EMPERNEISWSAMIARYSQSGYAEEALKLFSKM 307

Query: 404 KESGLAKIPGRSWIECS 420
            + G    P  S   C+
Sbjct: 308 VQEGFK--PNISCFACT 322


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 241/458 (52%), Gaps = 42/458 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D+ SWN+M++G S+ G  EE  A+FR M                            
Sbjct: 103 MPVKDVTSWNTMVSGLSKNGASEEAAAMFRIM---------------------------- 134

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYM 119
              V N V         W  NA++   A  G +  A  L     +K D + ++A++SGYM
Sbjct: 135 --PVRNAVS--------W--NAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYM 182

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTIS 178
             G V+KAM+ F  M    L +WNAV++G V+N+R +  L + + M + S V+PNA T+S
Sbjct: 183 DTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLS 242

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+    S+ S L  G+++H + +K    RN+ V T+++  Y K G L+ A +VFD    +
Sbjct: 243 SVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK 302

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++ W A+IS YA HG   +A+ LF +M + G+ PD +T  AVL+AC H+GL D     F
Sbjct: 303 DIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 362

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   Y I+P ++HY+CMV +L RA  +  A   +  MP +P    +G LL    +  +
Sbjct: 363 ETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKN 422

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           +E  +F    L E +P+N G Y+ +AN+Y+ A +W +  RVR  MK++ + K PG SW+E
Sbjct: 423 LEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWME 482

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             G    F + D    +   I+  L+RL  LM+  GYV
Sbjct: 483 IKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYV 520



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 157/363 (43%), Gaps = 64/363 (17%)

Query: 81  NALIGMYAKCGSLDY---ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP 137
           N L+  YAK   L     AR L D +   D VSY+ ++S +   G ++ A  +F  M   
Sbjct: 47  NCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVK 106

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            +++WN ++SGL +N   E    + R M    VR NAV+ +++ +  +   ++   +++ 
Sbjct: 107 DVTSWNTMVSGLSKNGASEEAAAMFRIMP---VR-NAVSWNAMVAALACSGDMGAAEDLF 162

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
             A   + D  ++  TA++  Y  TG +  A   F     R+L+ W A+++ Y  +  A 
Sbjct: 163 RNA-PEKTDAILW--TAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRAD 219

Query: 258 KAVSLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
            A+ +F  M+ + I QP+  T ++VL  C+            N  +  +G Q    H  C
Sbjct: 220 DALRVFKTMVEDSIVQPNASTLSSVLLGCS------------NLSALGFGRQ---VHQWC 264

Query: 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           M                  K+P+  +  V  +LL      GD+      C    E+  ++
Sbjct: 265 M------------------KLPLSRNVTVGTSLLSMYCKCGDLNDA---CKVFDEMSTKD 303

Query: 377 TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE-------------CSGGL 423
              +  M + Y+Q G   +A ++ E+MK+ G+  +P   WI              C  G+
Sbjct: 304 IVAWNAMISGYAQHGGGMQAIKLFEKMKDEGV--VP--DWITLLAVLTACIHTGLCDFGI 359

Query: 424 QSF 426
           Q F
Sbjct: 360 QCF 362


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 255/468 (54%), Gaps = 8/468 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD++SW S+IA YS+    +E    F+ ML+  +  PD VTV+ VL AC Q  D+  G  
Sbjct: 203 RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGI-APDDVTVIGVLSACSQLKDLELGCS 261

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMVHG 122
           +H+ V E  + M   +  ALI MYAKCG   +AR + D +   +   S++AII GY  HG
Sbjct: 262 LHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHG 321

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V+ A  LF  M+   + T+N++I+G + + +    L L   M+   +R +  T+ S+ S
Sbjct: 322 HVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLS 381

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L  G+ +H        + +IY+ TA++D Y K G ++ A  VF R   R +  
Sbjct: 382 ACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHA 441

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I+  A +G     +  F +M  +G QP+PV++ AVL+AC+HS L+++    F+ M 
Sbjct: 442 WTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMR 501

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y I P +EHY CM+ +L R+  + EA + V  MP++P++ +W ++L    +   ++L 
Sbjct: 502 ILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLA 561

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +   +HL +IEP+    Y+ + N+   + +W++A ++R  M+E  + K  G S +  +G 
Sbjct: 562 QCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQ 621

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           +  FV  D S  +  +I  +LE +   ++  GY      V +D  EEE
Sbjct: 622 VHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEE 669



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 204/422 (48%), Gaps = 42/422 (9%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSDIVFG 61
            D++SWNS+++ Y+  G  +E     ++ML     P +R    + VS+L   G++ D   G
Sbjct: 961  DVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIR----SFVSLLALSGKTGDWQLG 1016

Query: 62   MEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++H  V +       + +   LI MY KC   D++ A+ +E+                 
Sbjct: 1017 VQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSI-------------- 1062

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                              L   N++I+  ++ N  +A L+++  M   GV P+ VT S+ 
Sbjct: 1063 -----------------ALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSAT 1105

Query: 181  FSL--FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
                  S   +L   + +H   VK  ++ ++ V +++I  YA  G L  +  +F+     
Sbjct: 1106 MKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDP 1165

Query: 239  SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++I +TAIISA A +GD ++A+ LF++M+++G++PD VTF   ++ C  +G+ ++   + 
Sbjct: 1166 NVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVI 1225

Query: 299  NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              M     + P   H+ACMV +LSR   + EA E + + P++   K W +LL      G+
Sbjct: 1226 ELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGE 1285

Query: 359  VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
              LGK   + L ++  ++    + ++N ++  G  + A R++E M      K  G S IE
Sbjct: 1286 NVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKE-MTNVKEVKKSGHSLIE 1344

Query: 419  CS 420
             S
Sbjct: 1345 VS 1346



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 10/278 (3%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSD--IVFGMEVHNFVIESHIK-MDLWICNALI 84
           LFR M  + V RPDG T    L  C  SS    +    +H   + + +     ++ N+LI
Sbjct: 93  LFRRMRRAAV-RPDGFTF-HFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLI 150

Query: 85  GMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNA 144
            MY + G     R   DE+  KD VS++ +ISG    G +  A  L        + +W +
Sbjct: 151 HMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTS 210

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           +I+   + +R +  +D  + M + G+ P+ VT+  + S  S   +L+ G  +H    +  
Sbjct: 211 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKG 270

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLIIWTAIISAYAAHGDASKAVSLF 263
              +  +  A+ID YAK G    A+ VFD   +GR    W AII  Y  HG    A SLF
Sbjct: 271 MSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLF 330

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           ++M    I    +TF ++++   HSG + +A  +F  M
Sbjct: 331 DQMEVRDI----ITFNSMITGYIHSGQLREALLLFMNM 364



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 42/279 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDI+++NSMI GY   G   E   LF  M     LR D  TVVS+L AC     +  
Sbjct: 333 MEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD-LRVDNFTVVSLLSACASLGALPQ 391

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  +    ++ D++I  AL+ MY KCG ++ A  +   M  +D  +++A+I+G   
Sbjct: 392 GRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAF 451

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  +  ++ F                                +M+  G +PN V+  ++
Sbjct: 452 NGMGKAGLEYFY-------------------------------QMRCDGFQPNPVSYIAV 480

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236
            +  SH   L  G+    Y  + R   NI+        +ID   ++G L  A  +     
Sbjct: 481 LTACSHSCLLNEGRL---YFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 537

Query: 237 GR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
            + + +IW +I+SA   H     A      +L   I+PD
Sbjct: 538 MQPNSVIWASILSACRVHKRIDLAQCAAEHLLK--IEPD 574


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 253/469 (53%), Gaps = 38/469 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSW ++I+GY   G Y E   LF  ++          T  ++++A      I  
Sbjct: 193 MPARNAVSWGTIISGYVDSGNYVEAFRLFI-LMREEFYDCGPRTFATMIRASAGLEIIFP 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+  I++ +  D+++  ALI MY+KCGSL+ A  + DEM DK  V           
Sbjct: 252 GRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVG---------- 301

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++I+G   +   E  LDL  EM+ SGV+ +  T S I
Sbjct: 302 ---------------------WNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSII 340

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + S  +++   K++H   V+N +  ++   TA++D Y+K G +  A+ VFDR   R++
Sbjct: 341 IRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNI 400

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+I+ Y  HG   +A+ +F +ML  G+ P+ VTF AVLSAC+ SGL ++ W+IF +
Sbjct: 401 ISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQS 460

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  + ++P   H+ACM+ +L R   + EA   + K P +P+A +W ALL    + G++E
Sbjct: 461 MTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLE 520

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGKF  + L+ +EPE   NYI++ N+Y+ +G+  EA  V + +K  GL  +P  SWIE +
Sbjct: 521 LGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVN 580

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEE 463
               +F++ D    + E++   ++ L      LG + EE   +L +V+E
Sbjct: 581 NQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDE 629



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 33/317 (10%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
           T  +++ AC     I     + N+++++  + D ++ N ++ M+ KCG +  A  L DEM
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193

Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
             ++ VS+  IISGY+  G   +A  LF +M+                    E   D   
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMR--------------------EEFYDCGP 233

Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
              A+ +R +A  +  IF           G+++H  A+K    ++I+V+ A+ID Y+K G
Sbjct: 234 RTFATMIRASA-GLEIIFP----------GRQLHSCAIKAGLGQDIFVSCALIDMYSKCG 282

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            L  A  VFD    ++++ W +II+ YA HG + +A+ L++EM ++G++ D  TF+ ++ 
Sbjct: 283 SLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIR 342

Query: 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
            C+    V +A  +  ++  + G    V     +V   S+  ++ +A     +M  + + 
Sbjct: 343 ICSRLASVARAKQVHASLV-RNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCR-NI 400

Query: 344 KVWGALLYGASISGDVE 360
             W AL+ G    G  E
Sbjct: 401 ISWNALIAGYGNHGHGE 417


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 260/460 (56%), Gaps = 12/460 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF--GM 62
           D V+W ++++ +++ G +     LF +M  S     +  +V   L AC  + D+    G 
Sbjct: 174 DAVTWTTLLSAHARCGKHPVVLELFGDMHRSGC-EGNAESVAVALSACPYAGDLALAKGR 232

Query: 63  EVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +H + V +  ++  L++ N+L+ MY K G +D AR +  E  +++ V+++A+I+ Y   
Sbjct: 233 AIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAA 292

Query: 122 GFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           G  ++A+++   M++      P + +W+AVI G   +  +E  L+L R MQ   + PN V
Sbjct: 293 GMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQWLSPNVV 352

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T++++ S  +    ++ G+E+H  A+++  DR+  VA  +I+ YAK G +  A+ VFD  
Sbjct: 353 TLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGM 412

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
           K R L+ W ++++ Y  HG    A+++F +M    + PD VTF AVLSAC+H+G V +  
Sbjct: 413 KSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGR 472

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +F+ M  ++ I PS+EHY CMV +L RA  + EA+EF+  MP+     VWGALL    I
Sbjct: 473 RLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSCRI 532

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
            GD  + +       +     TGN+ ++ NLY+  G WD++ RVR   +E+GL K PG+S
Sbjct: 533 HGDAAMAEATIAKALQAGVVTTGNHTLITNLYAACGMWDDSKRVRVMTREAGLRKNPGQS 592

Query: 416 WIECSGGLQSFVAKDT--SGDKSEQIYLILERLLGLMREE 453
           W+E    + +F+A     S  ++E ++ +L+ L   M ++
Sbjct: 593 WVEVKNKVFAFMAGSVPPSMPRAEDVFRVLDDLYREMDDQ 632



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSWNSM+AGY   G  ++  A+F +M  + V  PDGVT V+VL AC  +  +  
Sbjct: 412 MKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKV-DPDGVTFVAVLSACSHAGRVSE 470

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIIS 116
           G  + + +I  H     M+ + C  ++ +  + G L  A   ++ M    D   + A+++
Sbjct: 471 GRRLFDQMILEHKISPSMEHYTC--MVDLLGRAGLLKEASEFIETMPMGADLCVWGALLN 528

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
              +HG  + AM    + K        A+ +G+V    H  + +L
Sbjct: 529 SCRIHG--DAAMAEATIAK--------ALQAGVVTTGNHTLITNL 563



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 137/315 (43%), Gaps = 34/315 (10%)

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           WN ++   +  +R +  L L R M+A S   PN+ T+    +L +  S +     IH +A
Sbjct: 43  WNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLP--LALRAATSPI--ASAIHAHA 98

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-RSLIIWTAIISAYAAHGDASKA 259
           +      +  VA  ++  YA+ G    A  VFD     R+ + W  +ISAY+   D + A
Sbjct: 99  LHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDPNNA 158

Query: 260 VSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAM--SGQYGIQPS--VEHY 314
           ++ F  M   G   PD VT+T +LSA A  G      ++F  M  SG  G   S  V   
Sbjct: 159 MATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAVALS 218

Query: 315 AC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGAL--LYGASISGDVELGKFVCDHLFE 371
           AC   G L+ A+  +     V+K  V+    V  +L  +YG       +LGK   D   E
Sbjct: 219 ACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYG-------KLGKM--DDARE 269

Query: 372 IEPE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG-RSWIECSGGLQSF 426
           +  E    NT  +  +   Y+ AG  DEA  V  +M++ G    P   SW    GG  S 
Sbjct: 270 VFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFAS- 328

Query: 427 VAKDTSGDKSEQIYL 441
                SGD    + L
Sbjct: 329 -----SGDNERALEL 338


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 258/475 (54%), Gaps = 40/475 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D +SW ++I  Y+Q   + E   +FRE     + + D + + S+L+AC     I+ 
Sbjct: 427 MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGI-KVDPMMIGSILEACSGLETILL 485

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H + I + + +DL + N +I +Y +CG + ++  + + +  KD V+++++I+ Y  
Sbjct: 486 AKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYAN 544

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A+ LF                                EMQ++ V+P++V + SI
Sbjct: 545 SGLLNEALVLFA-------------------------------EMQSTDVQPDSVALVSI 573

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
                  S+L  GKE+HG+ ++  +     + ++++D Y+  G L GA +VF+  K + +
Sbjct: 574 LGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDM 633

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++WTA+I+A   HG   +A+ LF  ML  G+ PD V+F A+L AC+HS LV++     + 
Sbjct: 634 VLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDM 693

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   Y ++P  EHYAC+V +L R+ +  EA EF+  MP+KP + VW +LL    +  + E
Sbjct: 694 MMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHE 753

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L     + L E+EP+N GNY++++N++++ G+W+ A  VR ++ E GL K P  SWIE  
Sbjct: 754 LAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIG 813

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEESAYV 468
             + +F  +D S   +E+I L L  +   +R+EG        VL D  EEE   V
Sbjct: 814 NNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDV 868



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 33/283 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+ SWNSMI+G  Q G + +   LFR M    VL  +  T V VLQ C + + +  G E
Sbjct: 229 RDVASWNSMISGCLQNGMFLQALDLFRGM-QRAVLSMNSYTTVGVLQVCTELAQLNLGRE 287

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +++S  ++++  CNAL+ MY KCG +D A  +  E+ +KD +S             
Sbjct: 288 LHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYIS------------- 333

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN+++S  VQN  +   ++ + EM   G +P+   I S+ S 
Sbjct: 334 ------------------WNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
             H   L  GKE+H YA+K R D +  V   ++D Y K  ++  +  VFDR + +  I W
Sbjct: 376 VGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISW 435

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
           T II+ YA      +A+ +F E    GI+ DP+   ++L AC+
Sbjct: 436 TTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 197/432 (45%), Gaps = 70/432 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D +SWNSM++ Y Q G Y E      EML     +PD   +VS+  A G    ++ 
Sbjct: 326 IDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGG-FQPDHACIVSLSSAVGHLGWLLN 384

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EVH + I+  +  D  + N L+ MY KC  ++Y+  + D M  KD +S++ II+ Y  
Sbjct: 385 GKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCY-- 442

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         Q++RH   L++ RE Q  G++ + + I SI
Sbjct: 443 -----------------------------AQSSRHIEALEIFREAQKEGIKVDPMMIGSI 473

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S    +   K++H YA++N    ++ V   IID Y + G ++ + ++F+  + + +
Sbjct: 474 LEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDI 532

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           + WT++I+ YA  G  ++A+ LF EM +  +QPD V   ++L A             H  
Sbjct: 533 VTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGF 592

Query: 290 LVDKAW-----------DIFN---AMSGQYGIQPSVEH-----YACMVGVLSRARRISEA 330
           L+ + +           D+++   ++SG   +  +V+      +  M+          +A
Sbjct: 593 LIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQA 652

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMA 384
            +   +M    V P    + ALLY  S S  V  GK   D +   + +EP    +Y  + 
Sbjct: 653 IDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQE-HYACVV 711

Query: 385 NLYSQAGRWDEA 396
           +L  ++G+ +EA
Sbjct: 712 DLLGRSGQTEEA 723



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 35/292 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV--LRPDGVTVVSVLQACGQSSDI 58
           MS R + SWN++I  Y   G   E   ++R M  S    + PDG T+ SVL+A G   D 
Sbjct: 121 MSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDG 180

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISG 117
             G EVH   ++  +    ++ NALI MYAKCG LD A  + + M D +D  S++++ISG
Sbjct: 181 RCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISG 240

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
            + +G   +A+DLF+ M+R  LS  +    G++Q     A L+L RE+            
Sbjct: 241 CLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGREL------------ 288

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
                   H + LK G E+           NI    A++  Y K G +  A RVF     
Sbjct: 289 --------HAALLKSGSEV-----------NIQ-CNALLVMYTKCGRVDSALRVFREIDE 328

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           +  I W +++S Y  +G  ++A+   +EML  G QPD     ++ SA  H G
Sbjct: 329 KDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLG 380



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 29/212 (13%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           D ++   L+ MY KCG +  AR L D MS +   S++A+I  Y+  G   +A+ +++ M 
Sbjct: 94  DGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAM- 152

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
                                      R   ASGV P+  T++S+        + + G E
Sbjct: 153 ---------------------------RLSAASGVAPDGCTLASVLKASGVEGDGRCGCE 185

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHG 254
           +HG AVK+  DR+ +VA A+I  YAK G L  A RVF+    GR +  W ++IS    +G
Sbjct: 186 VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
              +A+ LF  M    +  +  T   VL  C 
Sbjct: 246 MFLQALDLFRGMQRAVLSMNSYTTVGVLQVCT 277


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 255/470 (54%), Gaps = 6/470 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S   + + N+MI  + +G       +L+  M  S V  P+  T+  VLQAC  +  I  
Sbjct: 92  ISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIRE 151

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYM 119
           G +V   VI+     D+++ NALI +Y  C  ++ A+ + DE+ S +D VS++++I G++
Sbjct: 152 GAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFV 211

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
             G +  A  LF  M    + +W  +ISG VQN   E  LD  +E+    +RPN   + S
Sbjct: 212 RLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVS 271

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + +  +    L+ GK IH  A   R+     + TA++D YAK G +  ++ +FDR   + 
Sbjct: 272 LLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKD 331

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
              W  +I   A HG   +A++LF + L  G  P  VTF  VL+AC+ +GLV +    F 
Sbjct: 332 KWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFK 391

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M+  YGI+P +EHY CMV +LSRA  + +A E +++MP  P   +W ++L    + G +
Sbjct: 392 LMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFI 451

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+ + + L +++P + G+Y+ +A ++++  +W++  +VR  M E    KI G S IE 
Sbjct: 452 ELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEA 511

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            G +  FVA D   +++ +IY +LE +   +   GY      +L ++EEE
Sbjct: 512 EGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEE 561


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 256/457 (56%), Gaps = 11/457 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEEC----KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           R++VS+N++++  +  G   E       L R+    P L  D  TVVSV  AC       
Sbjct: 138 RNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAAR 197

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              E+H  V+ S ++  + + NA++  Y+K   ++ AR L D++S +D V+++++ISGY 
Sbjct: 198 PLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYC 257

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               + +A+ +F +M       W A+ISG  QN   +  L+L  +M A GV P    + S
Sbjct: 258 QVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVS 317

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
                +    +  GKE+H + ++        NI++  A++D Y+K G +  A  VFD   
Sbjct: 318 ALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMP 377

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R  I W ++++ ++ +G   +++++F EML  G++P  VTF AVL+AC+HSGLV     
Sbjct: 378 ERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRL 437

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKP-SAKVWGALLYGA 353
           +  +M   +G++P  EHYA  +  L R  ++ EATEF+  +P  + P +A  WGALL   
Sbjct: 438 VLESME-DHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGAC 496

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++EL + V + LF +EP N+G Y++M+N+Y+ AG+WD+A RVR  MKE GL K   
Sbjct: 497 RLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQA 556

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLM 450
            SWIE       FVA D S  ++++IY +L +LL  M
Sbjct: 557 YSWIEVRSAKHVFVADDISHCEADKIYEMLGKLLDHM 593



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 20/187 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D ++W ++I+G+ Q G  +    LF +ML   V  P    +VS L AC +   +  
Sbjct: 272 MPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGV-SPTPFVLVSALGACAKLGLVTR 330

Query: 61  GMEVHNFVIESHI---KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G E+H F++  +I     +++I NAL+ MY+KCG +  A A+ D M ++D +S++++++G
Sbjct: 331 GKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTG 390

Query: 118 YMVHGFVEKAMDLFQVMK----RPGLSTWNAVI-----SGLVQNNRHEAVLDLVRE-MQA 167
           +  +G  ++++ +F+ M     RP   T+ AV+     SGLV N R      LV E M+ 
Sbjct: 391 FSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGR------LVLESMED 444

Query: 168 SGVRPNA 174
            GV P A
Sbjct: 445 HGVEPRA 451



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 11/148 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SWNSM+ G+S  G  ++  A+F EML + V RP  VT ++VL AC  S  +  
Sbjct: 376 MPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGV-RPTHVTFLAVLTACSHSGLVSN 434

Query: 61  G------MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G      ME H   +E   +      +AL   +    + ++ + L   +      S+ A+
Sbjct: 435 GRLVLESMEDHG--VEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGAL 492

Query: 115 ISGYMVHGFVEKAMDLFQVMKR--PGLS 140
           +    +HG +E A ++ + + R  PG S
Sbjct: 493 LGACRLHGNIELAEEVAEFLFRLEPGNS 520


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 255/471 (54%), Gaps = 38/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP--VLRPDGVTVVSVLQACGQSSDI 58
           M +RD  SW+++++ + + G      A++R ML  P      +  T  S L A   +   
Sbjct: 119 MPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCA 178

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G E+H  V+   I  D  + +AL  MYAK G LD AR++ D M  +D VS++A++  Y
Sbjct: 179 RAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRY 238

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
              G   +   LF  M R                               SG+ PN  T +
Sbjct: 239 FDAGRDGEGFRLFVRMMR-------------------------------SGILPNEFTYA 267

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +    + F++ K GK++HG   K+R   + +  +A++  Y+K G +  A RVF      
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKP 327

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            L+ WTA+IS YA +G   +A+  F+ +L++G +PD VTF  VLSACAH+GLVDK   IF
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIF 387

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +++  +YGI+ + +HYAC++ +LSR+     A + ++ MPVKP+  +W +LL G  I  +
Sbjct: 388 HSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKN 447

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V L  +  + LFEIEPEN   Y+ +AN+Y+  G +DE + +R  M+  G+ K+P  SWIE
Sbjct: 448 VRLAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIE 507

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F+  D S  ++E+IY +L++L   MREEGYV     +L +VE+E
Sbjct: 508 VGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDE 558



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 8/202 (3%)

Query: 91  GSLDYARALLDEMSDKDEVSYSAIIS--GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
            +L  A ALL  +   D  SY+ +++  G    G    A  LF  M R    +W+A++S 
Sbjct: 75  ATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSA 133

Query: 149 LVQNNRHEAVL----DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
            V++ +  A L     ++RE   SG   N  T SS  +  +     + G+E+H + V+  
Sbjct: 134 HVRHGQPRAALAIYRRMLREPGGSGA-DNEFTASSALAAATAARCARAGRELHCHVVRRG 192

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
            D +  V +A+ D YAK G L  A+ VFDR   R ++ WTA++  Y   G   +   LF 
Sbjct: 193 IDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFV 252

Query: 265 EMLNNGIQPDPVTFTAVLSACA 286
            M+ +GI P+  T+  VL ACA
Sbjct: 253 RMMRSGILPNEFTYAGVLRACA 274


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 242/455 (53%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V+W+++I G+       +   LF+ ML   +      ++ S L+AC     +  
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S +  DL   N+L+ MYAK G                             
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAG----------------------------- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A+ LF  M      +++A++SG VQN R E    + ++MQA  V P+A T+ S+
Sbjct: 275 --LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G+  HG  +         +  A+ID YAK G +  +++VF+    R +
Sbjct: 333 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 392

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF EM N G  PD VTF  +LSAC+HSGLV +    F+ 
Sbjct: 393 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 452

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY CMV +LSR   + EA EF+  MP++   +VW ALL    +  +++
Sbjct: 453 MGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 512

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + E+ PE TGN+++++N+YS AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 513 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S  +S +IY  L+ +L  +++ GY
Sbjct: 573 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 607



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 201/486 (41%), Gaps = 82/486 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA-LFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+V+WN+M+AGY+  G Y    A L    +    LRP+  T+V++L    Q   + 
Sbjct: 71  MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130

Query: 60  FGMEVHNFVI----------ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV 109
            G  VH + I          +S +   + +  AL+ MYAKCGSL YAR + D M  ++EV
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           ++SA+I G+++   + +A  LF+ M   GL                              
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL--------------------------- 223

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
              +  +I+S     +   +L+ G+++H    K+    ++    +++  YAK G +  A 
Sbjct: 224 ---SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287
            +FD    +  + ++A++S Y  +G A +A  +F +M    ++PD  T  +++ AC+H  
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 340

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI----------------- 327
               G       I   ++ +  I  ++       G +  +R++                 
Sbjct: 341 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 400

Query: 328 --------SEATEF---VSKMPVKPSAKVWGALLYGASISGDVELGK---FVCDHLFEIE 373
                    EAT     ++ +   P    +  LL   S SG V  GK    V  H + + 
Sbjct: 401 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 460

Query: 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSG 433
           P    +YI M +L S+ G  DEA    + M      +   R W+   G  + +   D   
Sbjct: 461 PR-MEHYICMVDLLSRGGFLDEAYEFIQSMP----LRADVRVWVALLGACRVYKNIDLGK 515

Query: 434 DKSEQI 439
             S  I
Sbjct: 516 KVSRMI 521



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 49/336 (14%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+  T    L+AC   +D   G  +H   I + ++ DL++  AL+ MY KC  L  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
              M  +D V+++A+++GY  HG                                H AV 
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMY------------------------------HHAVA 97

Query: 160 DLVR-EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-----NRYDRN----- 208
            L+  +MQ   +RPNA T+ ++  L +    L  G  +H Y ++     NR  ++     
Sbjct: 98  HLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDG 157

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           + + TA++D YAK G L  A+RVFD    R+ + W+A+I  +      ++A  LF  ML 
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 269 NGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            G+    P +  + L ACA    + +  +  +A+  + G+   +     ++ + ++A  I
Sbjct: 218 QGLCFLSPTSIASALRACASLDHL-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            +A     +M VK +        Y A +SG V+ G+
Sbjct: 277 DQAIALFDEMAVKDTVS------YSALVSGYVQNGR 306



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           V PN  T        S  ++   G+ IH +A+      +++V+TA++D Y K   L  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVS--LFNEMLNNGIQPDPVTFTAVLSACAH 287
            +F     R L+ W A+++ YA HG    AV+  L  +M  + ++P+  T  A+L   A 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 288 SG 289
            G
Sbjct: 126 QG 127


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 242/455 (53%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V+W+++I G+       +   LF+ ML   +      ++ S L+AC     +  
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S +  DL   N+L+ MYAK G                             
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAG----------------------------- 274

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A+ LF  M      +++A++SG VQN R E    + ++MQA  V P+A T+ S+
Sbjct: 275 --LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G+  HG  +         +  A+ID YAK G +  +++VF+    R +
Sbjct: 333 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 392

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF EM N G  PD VTF  +LSAC+HSGLV +    F+ 
Sbjct: 393 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 452

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY CMV +LSR   + EA EF+  MP++   +VW ALL    +  +++
Sbjct: 453 MGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 512

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + E+ PE TGN+++++N+YS AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 513 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S  +S +IY  L+ +L  +++ GY
Sbjct: 573 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 607



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/495 (23%), Positives = 202/495 (40%), Gaps = 100/495 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA-LFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+V+WN+M+AGY+  G Y    A L    +    LRP+  T+V++L    Q   + 
Sbjct: 71  MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130

Query: 60  FGMEVHNFVI----------ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV 109
            G  VH + I          +S +   + +  AL+ MYAKCGSL YAR + D M  ++EV
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           ++SA+I G+++   + +A  LF+ M   GL                              
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL--------------------------- 223

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
              +  +I+S     +   +L+ G+++H    K+    ++    +++  YAK G +  A 
Sbjct: 224 ---SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287
            +FD    +  + ++A++S Y  +G A +A  +F +M    ++PD  T  +++ AC+H  
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 340

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
               G       I   ++ +  I  +      ++ + ++  RI  + +  + MP +    
Sbjct: 341 ALQHGRCSHGSVIIRGLASETSICNA------LIDMYAKCGRIDLSRQVFNMMPSRDIVS 394

Query: 345 VWGALLYGASISGDVELGK--------------------FVC--------------DHLF 370
            W  ++ G  I G   LGK                    F+C               H F
Sbjct: 395 -WNTMIAGYGIHG---LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 450

Query: 371 EIEPENTG------NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
            +     G      +YI M +L S+ G  DEA    + M      +   R W+   G  +
Sbjct: 451 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMP----LRADVRVWVALLGACR 506

Query: 425 SFVAKDTSGDKSEQI 439
            +   D     S  I
Sbjct: 507 VYKNIDLGKKVSRMI 521



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 149/336 (44%), Gaps = 49/336 (14%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P+  T    L+AC   +D   G  +H   I + ++ DL++  AL+ MY KC  L  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
              M  +D V+++A+++GY  HG                                H AV 
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMY------------------------------HHAVA 97

Query: 160 DLVR-EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV----------KNRYDRN 208
            L+  +MQ   +RPNA T+ ++  L +    L  G  +H Y +          K++    
Sbjct: 98  HLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDG 157

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           + + TA++D YAK G L  A+RVFD    R+ + W+A+I  +      ++A  LF  ML 
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 269 NGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
            G+    P +  + L ACA    + +  +  +A+  + G+   +     ++ + ++A  I
Sbjct: 218 QGLCFLSPTSIASALRACASLDHL-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            +A     +M VK +        Y A +SG V+ G+
Sbjct: 277 DQAIALFDEMAVKDTVS------YSALVSGYVQNGR 306



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
           V PN  T        S  ++   G+ IH +A+      +++V+TA++D Y K   L  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVS--LFNEMLNNGIQPDPVTFTAVLSACAH 287
            +F     R L+ W A+++ YA HG    AV+  L  +M  + ++P+  T  A+L   A 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 288 SG 289
            G
Sbjct: 126 QG 127


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 160/516 (31%), Positives = 273/516 (52%), Gaps = 57/516 (11%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---I 58
           ++R++V+W ++++GY++ G  +E +ALF+ M    V+  +  T++    + G+  D   +
Sbjct: 94  ARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWN--TMLEAYTSAGRVRDAWTL 151

Query: 59  VFGMEVH-----NFVIESHIK---MD-------------LWICNALIGMYAKCGSLDYAR 97
             GM V      N ++ + ++   MD             +     ++   A+ GS+D AR
Sbjct: 152 FDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEAR 211

Query: 98  ALLDEMSDKDEVSYSAIISGY--------------------------MVHGFV-----EK 126
           AL D M +++ VS++A+ISGY                          M+ GF+     E+
Sbjct: 212 ALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLER 271

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A DLF  M R  + TW  +++G +Q+ + E  L +   M   G+RPN VT        S+
Sbjct: 272 AQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSN 331

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
            + L  G+++H    K  +  + ++ + +++ YAK G +  A++VFD  K + +I W  +
Sbjct: 332 LAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGM 391

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I+AYA HG   +A+ L+ +M   G +P+ VT+  +LSAC+HSGLVD+   IF  M     
Sbjct: 392 IAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRS 451

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           I    EHY C++ + SRA R+ +A   +  + V+PS+ VW ALL G +  G+  +G    
Sbjct: 452 IAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAA 511

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
            +L E EP N G Y ++ N+Y+ AG+W EA ++R +M + GL K PG SWIE    +  F
Sbjct: 512 RNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVF 571

Query: 427 VAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
           V++D S  +S+ I  +L+ +  +MR    V  D+++
Sbjct: 572 VSRDKSHSESDLINSLLQDIHDIMRMACTVPRDDMQ 607



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 24/210 (11%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFN 264
           DR++   TA++  YA+ G LH A+ +FDR    R+++ WTA++S YA  G   +A +LF 
Sbjct: 63  DRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQ 122

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM----SGQYGIQPSVEHYACMVGV 320
            M    +    V++  +L A   +G V  AW +F+ M    +G + I         ++  
Sbjct: 123 RMPERNV----VSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNI---------LLAA 169

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGN 379
           L R+  + +A +   +MP + +   W  ++ G + SG V+  +     LF+  PE N  +
Sbjct: 170 LVRSGNMDKARKLFDRMPER-NVMAWTTMVAGIARSGSVDEAR----ALFDGMPERNVVS 224

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLA 409
           +  M + Y++  R DEA  +  +M    +A
Sbjct: 225 WNAMISGYARNHRIDEAHDLFMKMPTRDIA 254



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 22/194 (11%)

Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP---- 275
           A  G +  A+R+FDR   R ++ WTA+++AYA  G    A +LF+       +PD     
Sbjct: 46  AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD-------RPDARRNV 98

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           VT+TA+LS  A +G VD+A  +F  M      + +V  +  M+   + A R+ +A     
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFQRMP-----ERNVVSWNTMLEAYTSAGRVRDAWTLFD 153

Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWD 394
            MPV+  A  W  LL     SG+++  +     LF+  PE N   +  M    +++G  D
Sbjct: 154 GMPVR-DAGSWNILLAALVRSGNMDKAR----KLFDRMPERNVMAWTTMVAGIARSGSVD 208

Query: 395 EADRVREQMKESGL 408
           EA  + + M E  +
Sbjct: 209 EARALFDGMPERNV 222


>gi|396582353|gb|AFN88216.1| pentatricopeptide repeat-containing protein [Phaseolus vulgaris]
          Length = 499

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 252/460 (54%), Gaps = 38/460 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           MS+RD VSWN++I  + Q G  EE   L  EM        D VTV ++L A     D   
Sbjct: 57  MSERDGVSWNTIITSFVQNGLDEEALMLVCEM-QKQRFTIDSVTVTALLSAASNMRDSYI 115

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
           G + H ++I   I+ +  + + LI MYAK G +  +  L ++   SD+D           
Sbjct: 116 GRQTHAYLIRHGIQFE-GMESYLIDMYAKSGLITTSELLFEQNGPSDRD----------- 163

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                               L++WNA+I+G  QN   +  + ++RE     V PNAVT++
Sbjct: 164 --------------------LASWNAMIAGYTQNGLSDKAILILREALVRKVTPNAVTLA 203

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI    S   +    +++HG++++   D N+YV TA++D Y+K G +  A+ VF R   +
Sbjct: 204 SILPSCSSMGSTAIARQLHGFSIRQLLDENVYVGTALVDAYSKLGAISYAENVFIRTLAK 263

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + + +T +I +Y  HG   +A++L++ ML +GI+PD VTF A+LSAC++SGLV++   IF
Sbjct: 264 NSVTYTTMIMSYGQHGMGKRALALYDSMLRSGIKPDAVTFIAILSACSYSGLVEEGLHIF 323

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA-KVWGALLYGASISG 357
            +M   + I+PS EHY C+  +L R  R+ EA EFV ++     A ++WG++L      G
Sbjct: 324 ESMDKIHKIKPSTEHYCCVADMLGRVGRVVEAYEFVERLGEDGDAVEIWGSILGACKNHG 383

Query: 358 DVELGKFVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             ELGK V + L    +E    G +++++N+Y++ G W+  DRVR QMKE GL K    S
Sbjct: 384 YFELGKVVAEKLLNMGMEKRIAGYHVLLSNIYAEEGEWENVDRVRNQMKEKGLQKEMACS 443

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           W+E +G +  FVA+D     S +IY IL++L   M + GY
Sbjct: 444 WVEIAGRVNYFVARDEKHPLSGEIYYILDKLTRDMMDVGY 483



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 165/369 (44%), Gaps = 71/369 (19%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           + NA+I MY++C S+D +  + ++MS++D VS                            
Sbjct: 33  VVNAIIVMYSRCSSVDTSFKVFEKMSERDGVS---------------------------- 64

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
              WN +I+  VQN   E  L LV EMQ      ++VT++++ S  S+  +   G++ H 
Sbjct: 65  ---WNTIITSFVQNGLDEEALMLVCEMQKQRFTIDSVTVTALLSAASNMRDSYIGRQTHA 121

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF--KGRSLIIWTAIISAYAAHGDA 256
           Y +++       + + +ID YAK+G +  ++ +F++     R L  W A+I+ Y  +G +
Sbjct: 122 YLIRHGIQFE-GMESYLIDMYAKSGLITTSELLFEQNGPSDRDLASWNAMIAGYTQNGLS 180

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG---------------LVDKAWDIFNAM 301
            KA+ +  E L   + P+ VT  ++L +C+  G               L+D+   +  A+
Sbjct: 181 DKAILILREALVRKVTPNAVTLASILPSCSSMGSTAIARQLHGFSIRQLLDENVYVGTAL 240

Query: 302 SGQYGIQPSVEH---------------YACMV---GVLSRARRISEATEFVSKMPVKPSA 343
              Y    ++ +               Y  M+   G     +R     + + +  +KP A
Sbjct: 241 VDAYSKLGAISYAENVFIRTLAKNSVTYTTMIMSYGQHGMGKRALALYDSMLRSGIKPDA 300

Query: 344 KVWGALLYGASISGDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
             + A+L   S SG VE G  +    D + +I+P +T +Y  +A++  + GR  EA    
Sbjct: 301 VTFIAILSACSYSGLVEEGLHIFESMDKIHKIKP-STEHYCCVADMLGRVGRVVEAYEFV 359

Query: 401 EQMKESGLA 409
           E++ E G A
Sbjct: 360 ERLGEDGDA 368


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 257/467 (55%), Gaps = 42/467 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQS 55
           M +RD+++WN++I+G+SQ    EE  +LF      P++  +G+     T+ +VL++    
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLF------PLMHTEGIGFNQTTLSTVLKSIAAL 326

Query: 56  SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
                  ++H   ++S  + D ++ N+LI  Y KCG ++ A  + +E    D V +++++
Sbjct: 327 QANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLV 386

Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
           + Y                                Q+ + E  L L  EMQ  G++P++ 
Sbjct: 387 TAY-------------------------------AQDGQGEEALRLYLEMQDRGIKPDSF 415

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
             SS+ +  +  S  + GK++H + +K  +  +I+   ++++ YAK G +  A   F R 
Sbjct: 416 VCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRI 475

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R ++ W+A+I   A HG   +A+ LF +ML  G+ P+ +T  +VL AC H+GLV +A 
Sbjct: 476 PVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAK 535

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
             FN+M   +GI+P  EHYACM+ +L RA ++  A E V+KMP + +A VWGALL  A I
Sbjct: 536 HYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARI 595

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
             +++LG+   + L  +EPE +G ++++AN+Y+  G WD+  RVR  MK+  + K PG S
Sbjct: 596 HKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMS 655

Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
           W+E    + +F+  D S  +S +IY  L+ L  L+++ GYV + E++
Sbjct: 656 WLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEID 702



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 204/439 (46%), Gaps = 69/439 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           ++K DIVSWN++IAG     ++     L REM N   + P+  T+ S L+AC   +    
Sbjct: 172 IAKPDIVSWNAIIAGCVLHEYHHRALELLREM-NKSGMCPNMFTLSSALKACAGMALREL 230

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ +I+  +  D ++   LI MY+KC S+D AR +   M ++D ++++A+ISG+  
Sbjct: 231 GRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH-- 288

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                         QN   E    L   M   G+  N  T+S++
Sbjct: 289 -----------------------------SQNEEDEEAASLFPLMHTEGIGFNQTTLSTV 319

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +        ++IH  ++K+ ++ + YV  ++IDTY K G +  A RVF+      L
Sbjct: 320 LKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDL 379

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           +++T++++AYA  G   +A+ L+ EM + GI+PD    +++L+ACA           H  
Sbjct: 380 VLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVH 439

Query: 290 LVDKAW--DIF--NAMSGQYGIQPSVEHYAC---------------MVGVLSRARRISEA 330
           ++   +  DIF  N++   Y    S+E  +C               M+G L++     EA
Sbjct: 440 ILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEA 499

Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDH---LFEIEPENTGNYIIMA 384
            +   +M    V P+     ++L   + +G V   K   +    LF IEP    +Y  M 
Sbjct: 500 LQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQE-HYACMI 558

Query: 385 NLYSQAGRWDEADRVREQM 403
           +L  +AG+ + A  +  +M
Sbjct: 559 DLLGRAGKLEAAMELVNKM 577



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 31/240 (12%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           SVL+AC  + D+V G +VH  V+ +    D ++ N+L+ +YAKCG    AR+L D + D+
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
             VS++A+ S Y                               V ++ H   + L  +M 
Sbjct: 75  SVVSWNALFSCY-------------------------------VHSDMHGEAVSLFHDMV 103

Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
            SG+RPN  ++SS+ ++ +   +   G++IHGY +K  YD + + A A++D YAK G L 
Sbjct: 104 LSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILE 163

Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
            A  VFD      ++ W AII+    H    +A+ L  EM  +G+ P+  T ++ L ACA
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 208/476 (43%), Gaps = 85/476 (17%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R +VSWN++ + Y     + E  +LF +M+ S + RP+  ++ S++  C    D V G +
Sbjct: 74  RSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGI-RPNEFSLSSMINVCTGLEDSVQGRK 132

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H ++I+     D +  NAL+ MYAK                                G 
Sbjct: 133 IHGYLIKLGYDSDAFSANALVDMYAKV-------------------------------GI 161

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A  +F  + +P + +WNA+I+G V +  H   L+L+REM  SG+ PN  T+SS    
Sbjct: 162 LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  +  + G+++H   +K     + ++   +ID Y+K   +  A+ VF     R +I W
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAW 281

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVD 292
            A+IS ++ + +  +A SLF  M   GI  +  T + VL + A           H+  + 
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLK 341

Query: 293 KAWD----IFNAMSGQYGIQPSVEH---------------YACMVGVLSRARRISEATEF 333
             ++    + N++   YG    VE                +  +V   ++  +  EA   
Sbjct: 342 SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401

Query: 334 VSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGNYIIMANLY 387
             +M    +KP + V  +LL   +     E GK V  H+ +   +     GN ++  N+Y
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLV--NMY 459

Query: 388 SQAGRWDEADRVREQMKESGLAKIPGR---SWIECSGGLQSFVAKDTSGDKSEQIY 440
           ++ G  ++A            ++IP R   SW    GGL    A+   G ++ Q++
Sbjct: 460 AKCGSIEDA--------SCAFSRIPVRGIVSWSAMIGGL----AQHGYGKEALQLF 503



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M   G++ N     S+    +   +L  GK++HG  V   +D + +VA +++  YAK G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
              A+ +FD    RS++ W A+ S Y       +AVSLF++M+ +GI+P+  + +++++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 285 CA-----------HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           C            H  L+   +D     S  +     V+ YA  VG+L  A  + +    
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYD-----SDAFSANALVDMYA-KVGILEDASSVFDEI-- 172

Query: 334 VSKMPVKPSAKVWGALLYGA 353
                 KP    W A++ G 
Sbjct: 173 -----AKPDIVSWNAIIAGC 187


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 244/457 (53%), Gaps = 34/457 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++ SWN +IA Y+   F+ +   +F   L     RPD  T+  V +AC    D   
Sbjct: 67  MVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMG-FRPDHFTLPPVFKACAGIGDSYL 125

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H++VI    +  + + ++++  YAKCG L  A      MS +D V           
Sbjct: 126 GKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSV----------- 174

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN +I GL +       L+  R+M + GV+ ++ T+ SI
Sbjct: 175 --------------------VWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSI 214

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S+     +L  GKEIHG  VKN+ +   + +  ++ID YAK G LH +++VF      +
Sbjct: 215 LSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELN 274

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           L+ WT++IS Y  HG   +A++LF +M   G QP+ VT TA+L++C+HSGL+++   IF 
Sbjct: 275 LVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFY 334

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +++  YG +PS EHYACMV +L R   + EA E +  M    +A VWGALL G  +  ++
Sbjct: 335 SINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLAGCLMHKNI 394

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+G+     LFE+EP N+ NYI + ++Y   G WD   R R +M+E GL K PG SWI  
Sbjct: 395 EIGEIAAHCLFELEPRNSSNYIALCSMYDSLGIWDGVSRTRAKMRELGLVKTPGCSWITV 454

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLG-LMREEGY 455
           +G +  F  +D S  +++ IY  L  ++  LM  +G+
Sbjct: 455 AGRVHKFYQEDLSHPETQMIYETLHGIVNILMLPKGW 491



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 154/389 (39%), Gaps = 79/389 (20%)

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH F+    ++ DL +      +Y+KCG L  AR + D+M +++  S++ +I+ Y  + F
Sbjct: 34  VHGFIPNITLQTDLLL------VYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCF 87

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
              A+ +F    + G                                RP+  T+  +F  
Sbjct: 88  FYDALGVFDSFLKMGF-------------------------------RPDHFTLPPVFKA 116

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   +   GK +H + ++  ++  + V ++++D YAK G L  A R F     R  ++W
Sbjct: 117 CAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVW 176

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF----- 298
             +I           A+  F +ML+ G++ D  T  ++LS C   G + K  +I      
Sbjct: 177 NLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVK 236

Query: 299 NAMSG-QYGIQPSVEHYACMVGVLSRARRI-------------------------SEATE 332
           N + G +  I  S+       G L  + ++                          EA  
Sbjct: 237 NQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALA 296

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFV-----CDHLFEIEPENTGNYIIMA 384
              KM     +P+     A+L   S SG +E G+ +      D+ FE   E   +Y  M 
Sbjct: 297 LFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAE---HYACMV 353

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPG 413
           +L  + G  +EA  + + MK +  A + G
Sbjct: 354 DLLGRFGYLEEAFELIKNMKSAATASVWG 382



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 55/293 (18%)

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
            A ++S I       S +   K+ H   + + +  NI + T ++  Y+K G L  A++VF
Sbjct: 5   TASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVF 64

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA------ 286
           D+   R++  W  +I++YA +     A+ +F+  L  G +PD  T   V  ACA      
Sbjct: 65  DKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSY 124

Query: 287 -----HS-------------------------GLVDKAWDIFNAMSGQYGIQPSVEHYAC 316
                HS                         GLVD AW  F  MS +  +  ++     
Sbjct: 125 LGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVD-AWRCFVNMSWRDSVVWNL----- 178

Query: 317 MVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGK-----FVCDH 368
           M+  L +A    +A E    M    VK  ++   ++L      GD+  GK      V + 
Sbjct: 179 MIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQ 238

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           +F  E    GN +I  ++Y++ G   ++++V   M E  L  +   S I C G
Sbjct: 239 IFGCEVA-IGNSLI--DMYAKCGCLHDSEKVFTTMSELNL--VTWTSMISCYG 286


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 261/459 (56%), Gaps = 17/459 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R +  WN+M++GY +     + + LF  M    V     +T  +++    +  D+  
Sbjct: 69  MYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV-----ITWTAMVTGYAKVKDLEA 123

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM--SDKDEVSYSAIISGY 118
                + + E  +    W  NA++  YA+ G  + A  L DEM  + ++ V+++A+IS Y
Sbjct: 124 ARRYFDCMPERSVVS--W--NAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAY 179

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTI 177
           M  G ++ A  LF  M    + TWN++I+G  QN +    ++L +EM  A  + P+ VT+
Sbjct: 180 MRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 239

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+ S   H   L+ G  +  +  +N+   +I    A+I  Y++ G +  A+RVF     
Sbjct: 240 VSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT 299

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           R ++ +  +IS +AAHG   +A++L + M   GI+PD VTF  VL+AC+H+GL+++   +
Sbjct: 300 RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKV 359

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           F ++       P+++HYACMV +L R   + +A   + +MP++P A V+G+LL  + I  
Sbjct: 360 FESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHK 414

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
            VELG+   + LFE+EP+N+GN+I+++N+Y+ AGRW + +R+RE MK+ G+ K  G SW+
Sbjct: 415 QVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWV 474

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E  G L  F+  D S ++S+ IY +L  L   MRE GY+
Sbjct: 475 EYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYI 513



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 169/385 (43%), Gaps = 36/385 (9%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
           L  E +    +RPD      ++++ G       G+  H  V++     D ++ NA+I MY
Sbjct: 16  LMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDAFVRNAVIDMY 70

Query: 88  AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
           A+            +++D     ++A++SGY       +A  LF VM    + TW A+++
Sbjct: 71  AR------------KVAD-----WNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVT 113

Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207
           G  +      V DL    +     P    +S    L  +  N    + +  +       R
Sbjct: 114 GYAK------VKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYR 167

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           N     A+I  Y + G L  A+++F+   GR+++ W ++I+ YA +G ++ A+ LF EM+
Sbjct: 168 NSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMI 227

Query: 268 N-NGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
               + PD VT  +V+SAC H G ++   W +      Q  I+ S+  +  M+ + SR  
Sbjct: 228 TAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ--IKLSISGHNAMIFMYSRCG 285

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE--IEPENTGNYIIM 383
            + +A     +M  +     +  L+ G +  G       +   + E  IEP+    +I +
Sbjct: 286 SMEDAKRVFQEMATRDVVS-YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV-TFIGV 343

Query: 384 ANLYSQAGRWDEADRVREQMKESGL 408
               S AG  +E  +V E +K+  +
Sbjct: 344 LTACSHAGLLEEGRKVFESIKDPAI 368



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 62/299 (20%)

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           H  V+ +  +MQ  GVRP+A     +       S   GG   H + +K  +  + +V  A
Sbjct: 11  HAKVVLMYEQMQGCGVRPDAFVYPILIK-----SAGTGGIGFHAHVLKLGHGSDAFVRNA 65

Query: 215 IIDTYAK---------TGFLH-----GAQRVFDRFKGRSLIIWTAII------------- 247
           +ID YA+         +G+        AQ +FD    R++I WTA++             
Sbjct: 66  VIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAAR 125

Query: 248 ------------------SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
                             S YA +G A +A+ LF+EML  G   + VT+ A++SA    G
Sbjct: 126 RYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML--GAYRNSVTWNAMISAYMRVG 183

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM----PVKPSAKV 345
            +D A  +FN M G+     +V  +  M+   ++  + + A E   +M     + P    
Sbjct: 184 DLDSARKLFNTMPGR-----NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVT 238

Query: 346 WGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQM 403
             +++      G +ELG +V   L E + + +   +  M  +YS+ G  ++A RV ++M
Sbjct: 239 MVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 297


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 239/456 (52%), Gaps = 40/456 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D  SWN+MI+G+SQ G  ++ + LF                               
Sbjct: 94  MPVKDTASWNTMISGFSQNGMMDQARELF------------------------------L 123

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            M V N V         W  NA+I  Y + G LD A+ L +    +  V+++A+I+G+M 
Sbjct: 124 VMPVRNSVS--------W--NAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMK 173

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A   F+ M    L TWNA+I+G ++N + E  L L + M  SG RPN  ++SS+
Sbjct: 174 FGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSV 233

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+ S LK GK++H    K+    NI   T+++  Y K G L  A ++F     + +
Sbjct: 234 LLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDV 293

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS YA HG   KA+ LF++M + G++PD +TF AVLSAC H+G VD   + FN+
Sbjct: 294 VTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNS 353

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++   +HY C+V +L R  ++ EA + + KMP KP + ++G LL    I  ++E
Sbjct: 354 MVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLE 413

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +F   +L  ++PE+   Y+ +AN+Y+   RWD    VR  MK++ + K PG SWIE  
Sbjct: 414 LAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVK 473

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             +  F + D    +   I+  L  L   MR  GYV
Sbjct: 474 SVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYV 509



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 158/364 (43%), Gaps = 59/364 (16%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           L G   + G +  AR L D + + D  SY+ +++ Y+ +  VE A   F  M     ++W
Sbjct: 43  LAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASW 102

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           N +ISG  QN     ++D  RE+       N+V+ +++ S +    +L   K++   A  
Sbjct: 103 NTMISGFSQN----GMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPV 158

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
               R++   TA+I  + K G +  A++ F+    ++L+ W A+I+ Y  +  A   + L
Sbjct: 159 ----RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKL 214

Query: 263 FNEMLNNGIQPDPVTFTAVLSACAH----------------------------------- 287
           F  M+ +G +P+P + ++VL  C++                                   
Sbjct: 215 FKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCK 274

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAK 344
            G ++ AW +F  M      Q  V  +  M+   ++     +A     KM    +KP   
Sbjct: 275 CGDLEDAWKLFLVMP-----QKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWI 329

Query: 345 VWGALLYGASISGDVELG-----KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399
            + A+L   + +G V+LG       V D+  E +P+   +Y  + +L  + G+  EA  +
Sbjct: 330 TFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPD---HYTCVVDLLGRGGKLVEAVDL 386

Query: 400 REQM 403
            ++M
Sbjct: 387 IKKM 390



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 16/203 (7%)

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA-AHGDASKAVSLFNEM 266
           N+  +  +I  + ++G L+ A RVF+    ++ + W ++++ Y+   G    A  LF+ +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
                +PD  ++  +L+   H+  V+ A   F+ M  +         +  M+   S+   
Sbjct: 64  ----PEPDIFSYNIMLACYLHNADVESARLFFDQMPVK-----DTASWNTMISGFSQNGM 114

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-ENTGNYIIMAN 385
           + +A E    MPV+ S   W A++ G   SGD++L K     LFE+ P  +   +  M  
Sbjct: 115 MDQARELFLVMPVRNSVS-WNAMISGYVESGDLDLAK----QLFEVAPVRSVVAWTAMIT 169

Query: 386 LYSQAGRWDEADRVREQMKESGL 408
            + + G+ + A++  E+M    L
Sbjct: 170 GFMKFGKIELAEKYFEEMPMKNL 192



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 45/244 (18%), Positives = 96/244 (39%), Gaps = 48/244 (19%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           +S + +I+ ++  G +  A+ +F+ M      TWN++++G                    
Sbjct: 6   ISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAG-------------------- 45

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
                             +SN +G  ++         + +I+    ++  Y     +  A
Sbjct: 46  ------------------YSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESA 87

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           +  FD+   +    W  +IS ++ +G   +A  LF  M       + V++ A++S    S
Sbjct: 88  RLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVR----NSVSWNAMISGYVES 143

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
           G +D A  +F     +     SV  +  M+    +  +I  A ++  +MP+K +   W A
Sbjct: 144 GDLDLAKQLFEVAPVR-----SVVAWTAMITGFMKFGKIELAEKYFEEMPMK-NLVTWNA 197

Query: 349 LLYG 352
           ++ G
Sbjct: 198 MIAG 201


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 256/457 (56%), Gaps = 11/457 (2%)

Query: 4   RDIVSWNSMIAGYSQGGFYEEC----KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           R++VS+N++++  +  G   E       L R+    P L  D  TVVSV  AC       
Sbjct: 130 RNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAAR 189

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              E+H  V+ S ++  + + NA++  Y+K   ++ AR L D++S +D V+++++ISGY 
Sbjct: 190 PLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYC 249

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               + +A+ +F +M       W A+ISG  QN   +  L+L  +M A GV P    + S
Sbjct: 250 QVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVS 309

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
                +    +  GKE+H + ++        NI++  A++D Y+K G +  A  VFD   
Sbjct: 310 ALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMP 369

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R  I W ++++ ++ +G   +++++F EML  G++P  VTF AVL+AC+HSGLV     
Sbjct: 370 ERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRL 429

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKP-SAKVWGALLYGA 353
           +  +M   +G++P  EHYA  +  L R  ++ EATEF+  +P  + P +A  WGALL   
Sbjct: 430 VLESME-DHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGAC 488

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++EL + V + LF +EP N+G Y++M+N+Y+ AG+WD+A RVR  MKE GL K   
Sbjct: 489 RLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQA 548

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLM 450
            SWIE       FVA D S  ++++IY +L +LL  M
Sbjct: 549 YSWIEVRSAKHVFVADDISHCEADKIYEMLGKLLDHM 585



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 20/187 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D ++W ++I+G+ Q G  +    LF +ML   V  P    +VS L AC +   +  
Sbjct: 264 MPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGV-SPTPFVLVSALGACAKLGLVTR 322

Query: 61  GMEVHNFVIESHI---KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           G E+H F++  +I     +++I NAL+ MY+KCG +  A A+ D M ++D +S++++++G
Sbjct: 323 GKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTG 382

Query: 118 YMVHGFVEKAMDLFQVMK----RPGLSTWNAVI-----SGLVQNNRHEAVLDLVRE-MQA 167
           +  +G  ++++ +F+ M     RP   T+ AV+     SGLV N R      LV E M+ 
Sbjct: 383 FSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGR------LVLESMED 436

Query: 168 SGVRPNA 174
            GV P A
Sbjct: 437 HGVEPRA 443



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 11/148 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD +SWNSM+ G+S  G  ++  A+F EML + V RP  VT ++VL AC  S  +  
Sbjct: 368 MPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGV-RPTHVTFLAVLTACSHSGLVSN 426

Query: 61  G------MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G      ME H   +E   +      +AL   +    + ++ + L   +      S+ A+
Sbjct: 427 GRLVLESMEDHG--VEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGAL 484

Query: 115 ISGYMVHGFVEKAMDLFQVMKR--PGLS 140
           +    +HG +E A ++ + + R  PG S
Sbjct: 485 LGACRLHGNIELAEEVAEFLFRLEPGNS 512


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 40/459 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA----LFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           M +RD VS+N +IA Y+    + +C A    LFREM      R   +   ++L   G   
Sbjct: 297 MPERDNVSYNVIIAAYA----WNQCAATVLRLFREMQKLGFDR-QVLPYATMLSVAGSLP 351

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D+  G ++H  ++   +  +  + NALI MY+KCG LD A++     S+K  +S      
Sbjct: 352 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAIS------ 405

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                                    W A+I+G VQN +HE  L L  +M+ +G+RP+  T
Sbjct: 406 -------------------------WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            SSI    S  + +  G+++H Y +++ Y  +++  + ++D YAK G L  A R FD   
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R+ I W A+ISAYA +G+A  A+ +F  ML+ G  PD VTF +VL+AC+H+GL D+   
Sbjct: 501 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMK 560

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F+ M  QY I P  EHYAC++  L R    S+  + + +MP K    +W ++L+   I 
Sbjct: 561 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIH 620

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+ EL +   D LF +EP +   Y+I++N+Y++AG+W++A  V++ M++ G+ K  G SW
Sbjct: 621 GNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 680

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +E    + SF + D +    ++I   L+RL   M ++GY
Sbjct: 681 VEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 719



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 165/350 (47%), Gaps = 34/350 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V++N+M+ G S+ G + +   LF  M  + +      T  S+L      + ++ 
Sbjct: 196 MHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGI-PATHFTFSSILTVAAGMAHLLL 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V+ S   +++++ N+L+  Y+KC  LD  R L DEM ++D VSY+ II+ Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY-- 312

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN   +          VL L REMQ  G     +  +++
Sbjct: 313 --------------------AWNQCAA---------TVLRLFREMQKLGFDRQVLPYATM 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+     ++  GK+IH   V         +  A+ID Y+K G L  A+  F     +S 
Sbjct: 344 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSA 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+I+ Y  +G   +A+ LF++M   G++PD  TF++++ A +   ++     + + 
Sbjct: 404 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 463

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           +  + G + SV   + +V + ++   + EA     +MP + S   W A++
Sbjct: 464 LI-RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVI 511



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 37/280 (13%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+  +W  M+  ++  G   +  +LFR ML   V+ PD VTV +VL   G +        
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTVLNLPGCTVP-----S 156

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F I+  +   +++CN L+  Y K G L  AR +  EM DKD V+Y+A++ G    G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A+ LF  M+R                               +G+     T SSI ++
Sbjct: 217 HTQALQLFAAMRR-------------------------------AGIPATHFTFSSILTV 245

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  ++L  G ++H   +++    N++V  +++D Y+K   L   +R+FD    R  + +
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSY 305

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
             II+AYA +  A+  + LF EM   G     + +  +LS
Sbjct: 306 NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLS 345



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 9/198 (4%)

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G L  ARA+ D+M  K+  S + I+S Y   G +  A  LF        +TW  ++    
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG--KEIHGYAVKNRYDRN 208
              R    L L R M   GV P+ VT++++        NL G     +H +A+K   D +
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-------NLPGCTVPSLHPFAIKFGLDTH 169

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           ++V   ++D Y K G L  A+RVF     +  + + A++   +  G  ++A+ LF  M  
Sbjct: 170 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRR 229

Query: 269 NGIQPDPVTFTAVLSACA 286
            GI     TF+++L+  A
Sbjct: 230 AGIPATHFTFSSILTVAA 247



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           +NI+    I+  Y+ +G L  AQ +F     R+   WT ++ A+AA G  S A+SLF  M
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 267 LNNGIQPDPVTFTAVLS--ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           L  G+ PD VT T VL+   C    L    + I   +     +  ++    C  G+L+ A
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPSL--HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189

Query: 325 RRI 327
           RR+
Sbjct: 190 RRV 192



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK  +D   Y     + +   +G LH A+ +FD+   +++     I+SAY++ GD   A 
Sbjct: 35  VKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQ 94

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
            LF     +    +  T+T ++ A A +G    A  +F AM G+ G+ P
Sbjct: 95  HLF----LSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE-GVIP 138


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 229/422 (54%), Gaps = 43/422 (10%)

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQV------------ 133
           MYA+CG  D A  + +EM  +D VS++A+ISG+   G   +AMD+F+             
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 134 --------------------------MKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
                                     M+  GL +WNA+++    N  H   ++L   MQ 
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQK 120

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            G+ P+AVT++++       S L  GK IH    + R   ++ +  A++D YA  G L  
Sbjct: 121 DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKE 180

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+ VFD    R ++ WT+IISAY  HG   +A+ LF +M   G++PD + F A+L+AC+H
Sbjct: 181 ARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSH 240

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
           +GL+D     F +M+ ++ I P +EHYACMV +L RA  I EA +F+  MP+KP+ +VWG
Sbjct: 241 AGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWG 300

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           ALL    I  ++++G    D L  + P+ TG Y++++N+Y++AGRW +   VR  M+  G
Sbjct: 301 ALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKG 360

Query: 408 LAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVE 462
           + K+PG S  E    + +F   DTS  +S+ IY  L  LL  +RE GY       L +VE
Sbjct: 361 IKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVE 420

Query: 463 EE 464
           EE
Sbjct: 421 EE 422



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++SWN+M+A Y+    + E   LF  M    +  PD VT+ +VL +CG+ S +  G  +H
Sbjct: 92  LISWNAMLAVYTNNEMHVEAVELFMRMQKDGI-EPDAVTLATVLPSCGEVSALSLGKRIH 150

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             +    +   + + NAL+ MYA CG L  AR + D M  +D VS+++IIS Y  HG   
Sbjct: 151 EVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGR 210

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
           +A+DLF+ M   GL   +     ++    H  +LD+
Sbjct: 211 EAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM 246



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+VSW S+I+ Y + G   E   LF +M     L PD +  V++L AC  +  +  
Sbjct: 188 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQG-LEPDSIAFVAILAACSHAGLLDM 246

Query: 61  GME-VHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
           G    ++   E HI  K++ + C  ++ +  + G +  A   +  M  K +E  + A++ 
Sbjct: 247 GKHYFYSMTSEFHIAPKLEHYAC--MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLG 304

Query: 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
              +H  ++  +     + R  P  + +  ++S +       A + +VR  M++ G++
Sbjct: 305 ACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIK 362


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 252/456 (55%), Gaps = 5/456 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+   W ++I GY+  G ++E  A++  M    +  P   T  ++L+ACG   D+  G +
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKACGSMGDLNLGRQ 171

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H           +++ N +I MY KCGS+  AR + DEM ++D +S++ +I+ Y   G 
Sbjct: 172 FHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGN 231

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A DLF+ +    +  W A+++G  QN + +  L+    M+ SG+R + VT++   S 
Sbjct: 232 MESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 291

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +     K        A K+ Y    ++ + +A+ID Y+K G +  A  VF     +++ 
Sbjct: 292 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVF 351

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            ++++I   A HG A +A+ LF+ M+    I+P+ VTF   L+AC+HSGLVD+   +F +
Sbjct: 352 SYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFAS 411

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +G++P+ +HY CMV +L RA R+ EA E +  M V+P   VWGALL    I  + +
Sbjct: 412 MYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPD 471

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW-IEC 419
           + +   +HLFE+EP+  GNYI+++N+YS AG W     VR+ +KE GL K P  SW ++ 
Sbjct: 472 IAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDK 531

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +G +  F   + +   S++I   LE L+  +   GY
Sbjct: 532 NGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGY 567



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/468 (20%), Positives = 199/468 (42%), Gaps = 72/468 (15%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLD-YARALLD 101
           +++S L  C   + I    ++H  V+   +    +I   LI    K G  +D Y R +++
Sbjct: 52  SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIE 108

Query: 102 EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
            +  ++   ++A+I GY + G  ++A+ ++  M++  ++  +   S L++       L+L
Sbjct: 109 PVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNL 168

Query: 162 VREMQASGVRPNAVTI----SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            R+  A   R          +++  ++    ++   +++         +R++   T +I 
Sbjct: 169 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKV----FDEMPERDVISWTELIA 224

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YA+ G +  A  +F+    + ++ WTA+++ +A +    +A+  F+ M  +GI+ D VT
Sbjct: 225 AYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVT 284

Query: 278 FTAVLSACAH-------------------------------------SGLVDKAWDIFNA 300
               +SACA                                       G V++A ++F +
Sbjct: 285 VAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVS 344

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEF----VSKMPVKPSAKVWGALLYGASIS 356
           M+ +     +V  Y+ M+  L+   R  EA +     V++  +KP+   +   L   S S
Sbjct: 345 MNNK-----NVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHS 399

Query: 357 GDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
           G V+ G+ V   +++   +EP    +Y  M +L  +AGR  EA  + + M      +  G
Sbjct: 400 GLVDQGRQVFASMYQTFGVEPTR-DHYTCMVDLLGRAGRLQEALELIKTMS----VEPHG 454

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEV 461
             W    G  +     D +   +E ++ +   ++G      Y+LL  V
Sbjct: 455 GVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIG-----NYILLSNV 497



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 9/235 (3%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA--QRVFDR 234
           +SS+ S      NL   K+IHG+ ++   D++ Y+ T +I T  K G       +RV + 
Sbjct: 50  VSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEP 109

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            + R+  +WTA+I  Y   G   +A++++  M    I P   TF+A+L AC   G ++  
Sbjct: 110 VQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLG 169

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
              F+A + +      V     M+ +  +   I  A +   +MP +     W  L+   +
Sbjct: 170 RQ-FHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVIS-WTELIAAYA 227

Query: 355 ISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             G++E        LFE  P ++   +  M   ++Q  +  EA    ++M++SG+
Sbjct: 228 RVGNMESAA----DLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 278



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 38/234 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM---------------------------- 32
           M +RD++SW  +IA Y++ G  E    LF  +                            
Sbjct: 211 MPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 270

Query: 33  --LNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYA 88
             +    +R D VTV   + AC Q     +         +S       + I +ALI MY+
Sbjct: 271 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 330

Query: 89  KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-KRPGLSTWNAVIS 147
           KCG+++ A  +   M++K+  SYS++I G   HG  ++A+DLF  M  +  +        
Sbjct: 331 KCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFV 390

Query: 148 GLVQNNRHEAVLDLVREMQAS-----GVRPNAVTISSIFSLFSHFSNLKGGKEI 196
           G +    H  ++D  R++ AS     GV P     + +  L      L+   E+
Sbjct: 391 GALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALEL 444



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI-- 58
           M+ +++ S++SMI G +  G  +E   LF  M+    ++P+ VT V  L AC  S  +  
Sbjct: 345 MNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQ 404

Query: 59  ---VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
              VF      F +E     D + C  ++ +  + G L  A  L+  MS
Sbjct: 405 GRQVFASMYQTFGVEP--TRDHYTC--MVDLLGRAGRLQEALELIKTMS 449


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 243/424 (57%), Gaps = 11/424 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M++GY+QGG  EE   LF +ML+   ++PD  T  +V+ +C    D   
Sbjct: 154 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCL 213

Query: 61  GME-VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM---SDKDEVSYSAIIS 116
               V     +   + + ++  AL+ M+AKCG+L+ A  + +++     +  V ++A+IS
Sbjct: 214 SESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 273

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS--GVRPNA 174
            Y   G +  A  LF  M +    +WN++I+G  QN      + L  EM +S    +P+ 
Sbjct: 274 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 333

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT+ S+FS   H   L  G         N    +I V  ++I+ Y++ G +  A  +F  
Sbjct: 334 VTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQE 393

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R L+ +  +IS +A HG   +++ L ++M  +GI+PD +T+ A+L+AC+H+GL+D+ 
Sbjct: 394 MATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEG 453

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F ++       P V+HYACM+ +L RA R+ EA + +  MP++P A ++G+LL   S
Sbjct: 454 QRLFESIKF-----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATS 508

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           I   VELG+     LF++EP N+GNY +++N+Y+ AGRW E D+VR+ M++ G+ K  G 
Sbjct: 509 IHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGL 568

Query: 415 SWIE 418
           SW+E
Sbjct: 569 SWLE 572



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 207/475 (43%), Gaps = 96/475 (20%)

Query: 12  MIAGYSQGGFYEEC-KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70
           M+  YSQ G + +   +LF+ ML    ++P+      ++++ G  S +         V++
Sbjct: 1   MLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLA-----HVLK 55

Query: 71  SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDL 130
           S    D ++ N ++G+YAK G +++AR L DEM D+    ++ +ISGY   G  E+A  L
Sbjct: 56  SGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTL 115

Query: 131 FQVM--------------------KRPGLST---------------WNAVISGLVQNNRH 155
           F VM                    K+  L T               WNA++SG  Q    
Sbjct: 116 FHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAP 175

Query: 156 EAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVAT 213
           E  + L  +M + G V+P+  T +++ S  S   +    + I      K  +  N +V T
Sbjct: 176 EETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKT 235

Query: 214 AIIDTYAKTGFLHGAQRVFDR---FKGRSLIIWTAIISAYA------------------- 251
           A++D +AK G L  A ++F++   +K RS + W A+ISAYA                   
Sbjct: 236 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRD 295

Query: 252 ------------AHGDASKAVSLFNEMLN--NGIQPDPVTFTAVLSACAHSGLVDKA-WD 296
                        +G++ KA+ LF EM++  +  +PD VT  +V SAC H G +    W 
Sbjct: 296 TVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWA 355

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +  ++     IQ S+  Y  ++ + SR   + +A     +M  +        + Y   IS
Sbjct: 356 V--SILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR------DLVSYNTLIS 407

Query: 357 GDVELGK-----FVCDHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           G  E G       +   + E  IEP+    YI +    S AG  DE  R+ E +K
Sbjct: 408 GFAEHGHGMESIELLSKMKEDGIEPDRI-TYIAILTACSHAGLLDEGQRLFESIK 461


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 249/473 (52%), Gaps = 38/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++VSW ++I GY   G + E    F+++L    L+PD  ++V VL AC +  D   
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG-LKPDSFSLVKVLAACARLGDCTS 233

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +  ++ +S +  ++++  +L+ MY KCG+L+ A  +   M +KD VS+S +I GY  
Sbjct: 234 GEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAF 293

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  ++A+DLF                                +MQ+  ++P+  T+  +
Sbjct: 294 NGLPQQALDLF-------------------------------FQMQSENLKPDCYTMVGV 322

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +    L  G        +N +  N  + TA+ID Y+K G +  A  +F   K +  
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W A++   + +G A    SLF+ +  +GI+PD  TF  +L  C H G V++    FN 
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN 442

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   + + PS+EHY CMV +L RA  ++EA + ++ MP+KP+A VWGALL G  +  D  
Sbjct: 443 MKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTH 502

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L + V   L E+EP N+GNY+ ++N+YS   RW+EA+++R  MKE  + KI   SWIE  
Sbjct: 503 LAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEESAY 467
           G +  F+  D S   SE+IY  L+ L      +G +    +VL D  EEE  +
Sbjct: 563 GIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEH 615



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 22/290 (7%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
           +AR LL    D+D    + I+   +  G    +  +F  +K P +  WN +I GLV  + 
Sbjct: 36  HAR-LLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
            +  + L   M+  G  PN  TI  +    +   +++ G +IH   VK  YD +++V T+
Sbjct: 95  FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTS 154

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
           ++  Y K      A +VFD    ++++ WTAII+ Y + G   +A+  F ++L  G++PD
Sbjct: 155 LLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPD 214

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQY--------GIQPSVEHYACMVGVLSRARR 326
             +   VL+ACA  G         +  SG++        G+  +V     ++ +  +   
Sbjct: 215 SFSLVKVLAACARLG---------DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
           +  A    S MP K     W  ++ G + +G   L +   D  F+++ EN
Sbjct: 266 LERANLIFSAMPEKDIVS-WSTMIQGYAFNG---LPQQALDLFFQMQSEN 311


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 243/450 (54%), Gaps = 34/450 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R   SWNSMIA Y+ GG + E  ALF  ML+    RP+ +T+ SV   C +S D+  
Sbjct: 162 MERRTSASWNSMIACYAHGGEFREALALFDRMLSEGA-RPNAITITSVFSICAKSGDLDT 220

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V + + E  ++ ++ +  AL+ MY KC ++D AR   D MS +D V+          
Sbjct: 221 GKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVA---------- 269

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+ +I+G  QN R    L+L   M+A+  RPN VT+  +
Sbjct: 270 ---------------------WSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGV 308

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   + +  ++I  YA   R     Y+ +A+ID Y + G +  A+ VF R + + +
Sbjct: 309 ISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGV 368

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W ++I   A +G A  A+SL+ +M  NG+QP+ +TF A+L+AC H+GLVD+    F  
Sbjct: 369 ITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEE 428

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ + P VEH AC+V +L ++  + EA +F+  M V+P+A +W  LL       DVE
Sbjct: 429 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVE 488

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L K     L  +EP+N+  Y++++N+Y+ AG W +A  +R+ M+   + K+   SWI+  
Sbjct: 489 LAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLD 548

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLM 450
           G +  F+ +DT   +S +IY ++   LGL+
Sbjct: 549 GEVHKFLVQDTYHPRSAEIYDVIHG-LGLL 577



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 193/402 (48%), Gaps = 9/402 (2%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           ++ ++  S+   + +    F  M       P G  V  V ++C  ++    G +VH   +
Sbjct: 39  STFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGC-VPLVFKSCALTASSCQGRQVHCHAL 97

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
              +  D+++  AL+  YAK G ++ A +  DEM  KD +  + +I+GY   G V+KA  
Sbjct: 98  VRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARR 157

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF  M+R   ++WN++I+           L L   M + G RPNA+TI+S+FS+ +   +
Sbjct: 158 LFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGD 217

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L  GK +     ++   +N+ V TA+++ Y K   +  A+R FDR   R ++ W+ +I+ 
Sbjct: 218 LDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAG 276

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           YA +G   +++ LF  M     +P+ VT   V+SACA  G  +    I N    Q    P
Sbjct: 277 YAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQR--LP 334

Query: 310 SVEHY-ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
              +  + ++ + +R   +  A    S+M  K     W +++ G +++G  E    + + 
Sbjct: 335 LTSYLGSALIDMYTRCGHVGRARSVFSRMEQK-GVITWNSMIRGLAMNGFAEDAISLYEK 393

Query: 369 LFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + E  ++P N   ++ +    + AG  D+     E+MK   L
Sbjct: 394 MAENGVQP-NEITFVALLAACTHAGLVDQGMAFFEEMKREHL 434



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 119/262 (45%), Gaps = 34/262 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A +LF  + RP  +  +  +S L + + H  +L     M   G    +  +  +F   + 
Sbjct: 23  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG------------------- 227
            ++   G+++H +A+      +++V TA++D YAK G +                     
Sbjct: 83  TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCL 142

Query: 228 ------------AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
                       A+R+FD  + R+   W ++I+ YA  G+  +A++LF+ ML+ G +P+ 
Sbjct: 143 ITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNA 202

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           +T T+V S CA SG +D    + + + G+  +Q  + H A M  +  + R I +A     
Sbjct: 203 ITITSVFSICAKSGDLDTGKRVRD-LIGEDDLQNVIVHTALM-EMYVKCRAIDDARREFD 260

Query: 336 KMPVKPSAKVWGALLYGASISG 357
           +M  +     W  ++ G + +G
Sbjct: 261 RMSQR-DVVAWSTMIAGYAQNG 281


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 248/443 (55%), Gaps = 3/443 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIV 59
           +   ++ SWN++I  +   G +E     F   L+ P    P+     S+++AC     I 
Sbjct: 71  LPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIA 130

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G++VH  VI+S +  ++ +  +L+ MY K      A  + DEM  +D VS++ ++SGY 
Sbjct: 131 DGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYC 190

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTIS 178
           + G +E A  +F  M    + +WNA+I G VQN ++   +++  EMQ   GV P+ VT+ 
Sbjct: 191 LCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLV 250

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S  +H   L  G+ I  +        N+Y+  A+ID YAK G +  A+R+FD  + R
Sbjct: 251 SVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRER 310

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +I W+ +I     HGDA +A   +++ML  G++P+ VTF  +LSAC+H+GLVDK  ++F
Sbjct: 311 DVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELF 370

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M  +Y I P V HY C++ +LSRA R+ EA + ++ MP++P+  VWGALL G  I  D
Sbjct: 371 SRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKD 430

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
              G+ V  HL E++ E TG+Y+ +A   +  GR D+A     +M+  G+ K PG S IE
Sbjct: 431 FRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKIE 490

Query: 419 CSGGLQSFVAKD-TSGDKSEQIY 440
               +  F   D TS  K  +++
Sbjct: 491 VHNTVHEFKECDNTSSGKDIRLF 513



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 161/390 (41%), Gaps = 100/390 (25%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           LIG  A   +L +A+ +  ++ + +  S++AII  ++  G  E A++ F           
Sbjct: 51  LIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCF----------- 99

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
                     NR  ++         S   PN    +S+    +    +  G ++H   +K
Sbjct: 100 ----------NRQLSL--------PSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIK 141

Query: 203 NRYDRNIYVATAIIDTYAK-------------------------------TGFLHGAQRV 231
           +  D NI++ T+++D Y K                                G L  A+RV
Sbjct: 142 SGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRV 201

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGL 290
           FD+   R +I W A+I  Y  +G  S A+ +F+EM    G+ PD VT  +VLSACAH G 
Sbjct: 202 FDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGA 261

Query: 291 VD-KAW-DIFNAMSGQ----YGIQPSVEHYACMVGVLSRARRI----------------- 327
           +D   W D F    G+    Y     ++ YA   G +  ARRI                 
Sbjct: 262 LDFGRWIDRFVGWRGRGLNLYLGNALIDMYA-KCGTMEEARRIFDGMRERDVISWSTMIC 320

Query: 328 --------SEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIE 373
                    EA  + SKM    VKP+   +  LL   S +G V+ G  +   +   + I 
Sbjct: 321 GSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIV 380

Query: 374 PENTGNYIIMANLYSQAGRWDEADRVREQM 403
           P+  G+Y  + +L S+AGR DEA+ +   M
Sbjct: 381 PK-VGHYGCVIDLLSRAGRLDEAEDLINSM 409



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           +A  +I   A    L+ AQ +F +    ++  W AII A+   G    A++ FN  L+  
Sbjct: 47  IAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLP 106

Query: 271 IQPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
             P+P    +T+++ ACA    +     + +A+  + G+  ++     +V +  + R  +
Sbjct: 107 SAPNPNEYIYTSLIKACAGLEAIADGLKV-HAVVIKSGLDNNIHLGTSLVDMYFKFREPA 165

Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
            A +   +MP++     W  ++ G  + GD+E  + V D + E    +  ++  M   Y 
Sbjct: 166 SAGQVFDEMPLRDVVS-WNTMVSGYCLCGDLESARRVFDQMLE---RDVISWNAMIGGYV 221

Query: 389 QAGRWDEADRVREQMKESG 407
           Q G++ +A  V  +M++ G
Sbjct: 222 QNGKYSDAIEVFHEMQKVG 240


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 248/431 (57%), Gaps = 6/431 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD+V+W  M+  Y Q   YEE   LF  M  S V+ PD V + +VL  C  + ++ F
Sbjct: 130 MPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV-PDQVIIATVLSTCAHTRNLRF 188

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H++++ S   +D  +  AL+ MYA C  ++ A  L + +S+K+ V  + ++ GY  
Sbjct: 189 GKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAK 248

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G VE A  +F  M    + +W+A+I+G  ++++    L+L  +MQ SGV+P+ +T+ S+
Sbjct: 249 NGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSV 308

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++   L+  + IH +   +   + + +  A+ID ++K G L  A  VF+    +++
Sbjct: 309 ISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNV 368

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT+II+A A HGD   A++LF  M + GIQP+ VTF  +L AC H+GLV++   +F  
Sbjct: 369 VTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKI 428

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  QY I+P  EHY CMV +L RA+ + +A + +  M ++P+  +WG+LL    + GD+E
Sbjct: 429 MVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLE 488

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP--GRSWIE 418
           LG F    + E++P + G  ++++N+Y++ G W++   V+E + +    K       ++E
Sbjct: 489 LGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWND---VKEGLSKKDYEKKKELAARFLE 545

Query: 419 CSGGLQSFVAK 429
            S  L +F  K
Sbjct: 546 ISADLSNFEQK 556



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 158/350 (45%), Gaps = 64/350 (18%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
           P    + S+L+A   +  +      H        ++D ++  AL+  YA CG ++ AR +
Sbjct: 67  PGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRV 126

Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
            D M D+D V++  ++  Y      E+A+ LF  MKR                       
Sbjct: 127 FDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKR----------------------- 163

Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY--------------AVKNRY 205
                   S V P+ V I+++ S  +H  NL+ GK IH Y              A+ N Y
Sbjct: 164 --------SRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMY 215

Query: 206 -----------------DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
                            ++ I ++T ++  YAK G +  A  +F+    + ++ W+A+I+
Sbjct: 216 ASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIA 275

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
            YA      +A++LF++M  +G++PD +T  +V+SACA+ G ++KA  I ++    + + 
Sbjct: 276 GYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCI-HSFVENHSMC 334

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             +     ++ + S+   ++ A +  + MP K +   W +++  +++ GD
Sbjct: 335 KILPIGNALIDMFSKCGSLTLALDVFNAMPQK-NVVTWTSIITASAMHGD 383


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/472 (32%), Positives = 259/472 (54%), Gaps = 42/472 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D VSW ++IA Y+Q   Y E    FR      + + D + + S+L+AC     I  
Sbjct: 426 MRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGI-KVDPMMMGSILEACSGLKSISL 484

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             +VH++ I + + +DL + N +I +Y +CG                EV Y         
Sbjct: 485 LKQVHSYAIRNGL-LDLILKNRIIDIYGECG----------------EVCY--------- 518

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISS 179
                 A+++F+++ +  + TW ++++   +N   HEAV  L  +M  +G++P++V +  
Sbjct: 519 ------ALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVA-LFGKMLNAGIQPDSVALVG 571

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I    +  S+L  GKEIHG+ ++ ++     V ++++D Y+  G ++ A +VFD  K + 
Sbjct: 572 ILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKD 631

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +++WTA+I+A   HG   +A+ +F  ML  G+ PD V+F A+L AC+HS LVD+     +
Sbjct: 632 VVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLD 691

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M  +Y +QP  EHYAC+V +L R+ +  EA +F+  MP++P + VW ALL    I  + 
Sbjct: 692 MMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNH 751

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           EL     D L E+EP+N GNY++++N++++ G+W+    +R +M E GL K P  SWIE 
Sbjct: 752 ELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEI 811

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG-------YVLLDEVEEE 464
              + +F A+D S   S+ I+L L  +   +R EG       +VL D  EEE
Sbjct: 812 GNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEE 863



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 141/287 (49%), Gaps = 35/287 (12%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+ SWNS I+G  Q G + E   LFR M  S     +  T V VLQ C + + +  G E
Sbjct: 228 RDVASWNSAISGCVQNGMFLEALDLFRRM-QSDGFSMNSYTTVGVLQVCAELAQLNHGRE 286

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H  +++   + ++  CNAL+ MYA+CG +D A  +  E+ DKD +S             
Sbjct: 287 LHAALLKCGTEFNIQ-CNALLVMYARCGWVDSALRVFREIGDKDYIS------------- 332

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             WN+++S  VQN  +   +D   EM  +G  P+   I S+ S 
Sbjct: 333 ------------------WNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
             H   L  G+E+H YAVK R D ++ +A  ++D Y K   +  + RVFDR + +  + W
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSW 434

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           T II+ YA     S+A+  F      GI+ DP+   ++L AC  SGL
Sbjct: 435 TTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC--SGL 479



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 138/292 (47%), Gaps = 34/292 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVL--RPDGVTVVSVLQACGQSSD 57
           M  R + SWN++I      G   E   ++R M  S PV    PDG T+ SVL+ACG   D
Sbjct: 119 MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGD 178

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
              G EVH   ++S +     + NAL+GMYAKCG LD A  + + M D  +V+       
Sbjct: 179 GRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVA------- 231

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                                  +WN+ ISG VQN      LDL R MQ+ G   N+ T 
Sbjct: 232 -----------------------SWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTT 268

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
             +  + +  + L  G+E+H   +K   + NI    A++  YA+ G++  A RVF     
Sbjct: 269 VGVLQVCAELAQLNHGRELHAALLKCGTEFNIQ-CNALLVMYARCGWVDSALRVFREIGD 327

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
           +  I W +++S Y  +   ++A+  F EM+ NG  PD     ++LSA  H G
Sbjct: 328 KDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLG 379



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 200/436 (45%), Gaps = 70/436 (16%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D +SWNSM++ Y Q   Y E    F EM+ +    PD   +VS+L A G    ++ G E
Sbjct: 328 KDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNG-FNPDHACIVSLLSAVGHLGRLINGRE 386

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH + ++  +  DL I N L+ MY KC S++ +  + D M  KD VS++ II+ Y     
Sbjct: 387 VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACY----- 441

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                                      Q++R+   +   R  Q  G++ + + + SI   
Sbjct: 442 --------------------------AQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEA 475

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            S   ++   K++H YA++N    ++ +   IID Y + G +  A  +F+    + ++ W
Sbjct: 476 CSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTW 534

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM-S 302
           T++++ +A +G   +AV+LF +MLN GIQPD V    +L A A    + K  +I   +  
Sbjct: 535 TSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIR 594

Query: 303 GQYGIQPSV-------------EHYACMVGVLSRARRISEATEFVS-------------- 335
           G++ ++ +V              +YA  V   ++ + +   T  ++              
Sbjct: 595 GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYI 654

Query: 336 -----KMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLY 387
                +  V P    + ALLY  S S  V+ GKF  D +   ++++P    +Y  + +L 
Sbjct: 655 FKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQE-HYACVVDLL 713

Query: 388 SQAGRWDEADRVREQM 403
            ++G+ +EA +  + M
Sbjct: 714 GRSGQTEEAYKFIKSM 729



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 28/225 (12%)

Query: 78  WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP 137
           ++   L+ MY KCG L  A  L D M  +   S++A+I   +  G   +A+ +++ M+  
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
                             E V         +G  P+  T++S+        + + G E+H
Sbjct: 154 ------------------EPV---------AGAAPDGCTLASVLKACGAEGDGRCGSEVH 186

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHGDA 256
           G AVK+  DR+  VA A++  YAK G L  A RVF+  + GR +  W + IS    +G  
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMF 246

Query: 257 SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            +A+ LF  M ++G   +  T   VL  CA    ++   ++  A+
Sbjct: 247 LEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAAL 291



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 13/180 (7%)

Query: 193 GKEIHGYAVKNRY---DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           G+++H +AV       D   ++AT ++  Y K G L  A R+FD    R++  W A+I A
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 250 YAAHGDASKAVSLFNEMLNN----GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
             + G A +AV ++  M  +    G  PD  T  +VL AC   G   +     + ++ + 
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG-DGRCGSEVHGLAVKS 192

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
           G+  S      +VG+ ++   +  A      M        W      ++ISG V+ G F+
Sbjct: 193 GLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASW-----NSAISGCVQNGMFL 247


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 40/459 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA----LFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           M +RD VS+N +IA Y+    + +C A    LFREM      R   +   ++L   G   
Sbjct: 297 MPERDNVSYNVIIAAYA----WNQCAATVLRLFREMQKLGFDR-QVLPYATMLSVAGSLP 351

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D+  G ++H  ++   +  +  + NALI MY+KCG LD A++     S+K  +S      
Sbjct: 352 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAIS------ 405

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                                    W A+I+G VQN +HE  L L  +M+ +G+RP+  T
Sbjct: 406 -------------------------WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            SSI    S  + +  G+++H Y +++ Y  +++  + ++D YAK G L  A R FD   
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R+ I W A+ISAYA +G+A  A+ +F  ML+ G  PD VTF +VL+AC+H+GL D+   
Sbjct: 501 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMK 560

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F+ M  QY I P  EHYAC++  L R    S+  + + +MP K    +W ++L+   I 
Sbjct: 561 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIH 620

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+ EL +   D LF +EP +   Y+I++N+Y++AG+W++A  V++ M++ G+ K  G SW
Sbjct: 621 GNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 680

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +E    + SF + D +    ++I   L+RL   M ++GY
Sbjct: 681 VEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 719



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 169/360 (46%), Gaps = 34/360 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  +D V++N+M+ G S+ G + +   LF  M  + +      T  S+L      + ++ 
Sbjct: 196 MHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGI-PATHFTFSSILTVAAGMAHLLL 254

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V+ S   +++++ N+L+  Y+KC  LD  R L DEM ++D VSY+ II+ Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY-- 312

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN   +          VL L REMQ  G     +  +++
Sbjct: 313 --------------------AWNQCAA---------TVLRLFREMQKLGFDRQVLPYATM 343

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+     ++  GK+IH   V         +  A+ID Y+K G L  A+  F     +S 
Sbjct: 344 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSA 403

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I WTA+I+ Y  +G   +A+ LF++M   G++PD  TF++++ A +   ++     + + 
Sbjct: 404 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 463

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           +  + G + SV   + +V + ++   + EA     +MP + S   W A++   +  G+ +
Sbjct: 464 LI-RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAK 521



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 37/280 (13%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+  +W  M+  ++  G   +  +LFR ML   V+ PD VTV +VL   G +        
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTVLNLPGCTVP-----S 156

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F I+  +   +++CN L+  Y K G L  AR +  EM DKD V+Y+A++ G    G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
             +A+ LF  M+R                               +G+     T SSI ++
Sbjct: 217 HTQALQLFAAMRR-------------------------------AGIPATHFTFSSILTV 245

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +  ++L  G ++H   +++    N++V  +++D Y+K   L   +R+FD    R  + +
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSY 305

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
             II+AYA +  A+  + LF EM   G     + +  +LS
Sbjct: 306 NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLS 345



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 9/198 (4%)

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G L  ARA+ D+M  K+  S + I+S Y   G +  A  LF        +TW  ++    
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG--KEIHGYAVKNRYDRN 208
              R    L L R M   GV P+ VT++++        NL G     +H +A+K   D +
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-------NLPGCTVPSLHPFAIKFGLDTH 169

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           ++V   ++D Y K G L  A+RVF     +  + + A++   +  G  ++A+ LF  M  
Sbjct: 170 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRR 229

Query: 269 NGIQPDPVTFTAVLSACA 286
            GI     TF+++L+  A
Sbjct: 230 AGIPATHFTFSSILTVAA 247



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
           +NI+    I+  Y+ +G L  AQ +F     R+   WT ++ A+AA G  S A+SLF  M
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 267 LNNGIQPDPVTFTAVLS--ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324
           L  G+ PD VT T VL+   C    L    + I   +     +  ++    C  G+L+ A
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPSL--HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189

Query: 325 RRI 327
           RR+
Sbjct: 190 RRV 192



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK  +D   Y     + +   +G LH A+ +FD+   +++     I+SAY++ GD   A 
Sbjct: 35  VKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQ 94

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
            LF     +    +  T+T ++ A A +G    A  +F AM G+ G+ P
Sbjct: 95  HLF----LSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE-GVIP 138


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 250/455 (54%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+MI  Y++     E   +F EM N    +    T+ SVL ACG + D + 
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFSEFTISSVLSACGVNCDALE 180

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H   +++ I ++L++  AL+ +YAKCG                             
Sbjct: 181 CKKLHCLSVKTCIDLNLYVGTALLDLYAKCG----------------------------- 211

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              ++ A+ +F+ M+     TW+++++G VQN  +E  L L R  Q   +  N  T+SS+
Sbjct: 212 --MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 269

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+ + L  GK++H    K+ +  N++VA++ +D YAK G L  +  +F   + ++L
Sbjct: 270 ICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 329

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            +W  IIS +A H    + + LF +M  +G+ P+ VTF+++LS C H+GLV++    F  
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 389

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P+V HY+CMV +L RA  +SEA E +  +P  P+A +WG+LL    +  ++E
Sbjct: 390 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 449

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LFE+EPEN GN+++++N+Y+   +W+E  + R+ +++  + K+ G+SWI+  
Sbjct: 450 LAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIK 509

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             + +F   ++   +  +I   L+ L+   R+ GY
Sbjct: 510 DKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGY 544



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 118/243 (48%), Gaps = 31/243 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           V  +LQ C ++  ++     H  +I   ++ D+ + N LI  Y+KCG ++ AR + D M 
Sbjct: 64  VHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGML 123

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           ++  VS++ +I  Y  +    +A+D+F  M+  G       IS +               
Sbjct: 124 ERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV--------------- 168

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           + A GV  +A+                  K++H  +VK   D N+YV TA++D YAK G 
Sbjct: 169 LSACGVNCDALEC----------------KKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 212

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A +VF+  + +S + W+++++ Y  + +  +A+ L+       ++ +  T ++V+ A
Sbjct: 213 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 272

Query: 285 CAH 287
           C++
Sbjct: 273 CSN 275



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%)

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N   +  I  L +    +   K  HG  ++   + ++ +   +I+ Y+K GF+  A++VF
Sbjct: 60  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           D    RSL+ W  +I  Y  +   S+A+ +F EM N G +    T ++VLSAC
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 251/456 (55%), Gaps = 5/456 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+   W ++I GY+  G ++E  A++  M    +  P   T  ++L+ACG   D+  G +
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKACGTMKDLNLGRQ 170

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H           +++ N +I MY KC S+D AR + DEM ++D +S++ +I+ Y   G 
Sbjct: 171 FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGN 230

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A +LF+ +    +  W A+++G  QN + +  L+    M+ SG+R + VT++   S 
Sbjct: 231 MECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 290

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
            +     K        A K+ Y    ++ + +A+ID Y+K G +  A  VF     +++ 
Sbjct: 291 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVF 350

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            ++++I   A HG A +A+ LF+ M+    I+P+ VTF   L AC+HSGLVD+   +F++
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDS 410

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +G+QP+ +HY CMV +L R  R+ EA E +  M V+P   VWGALL    I  + E
Sbjct: 411 MYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW-IEC 419
           + +   +HLFE+EP+  GNYI+++N+Y+ AG W    RVR+ +KE GL K P  SW ++ 
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDK 530

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +G +  F   + +   S +I   LE L+  +   GY
Sbjct: 531 NGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGY 566



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 176/403 (43%), Gaps = 63/403 (15%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLD-YARALLD 101
           +++S L  C   + I    ++H  V+   +    +I   LI    K G  +D YAR +++
Sbjct: 51  SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107

Query: 102 EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
            +  ++   ++A+I GY + G  ++A+ ++  M++  ++  +   S L++       L+L
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167

Query: 162 VREMQASGVRPNAVTI----SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
            R+  A   R          +++  ++    ++   +++         +R++   T +I 
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKV----FDEMPERDVISWTELIA 223

Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
            YA+ G +  A  +F+    + ++ WTA+++ +A +    +A+  F+ M  +GI+ D VT
Sbjct: 224 AYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVT 283

Query: 278 FTAVLSACAH-------------------------------------SGLVDKAWDIFNA 300
               +SACA                                       G V++A ++F +
Sbjct: 284 VAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMS 343

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEF----VSKMPVKPSAKVWGALLYGASIS 356
           M+ +     +V  Y+ M+  L+   R  EA       V++  +KP+   +   L   S S
Sbjct: 344 MNNK-----NVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHS 398

Query: 357 GDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEA 396
           G V+ G+ V D +++   ++P    +Y  M +L  + GR  EA
Sbjct: 399 GLVDQGRQVFDSMYQTFGVQPTR-DHYTCMVDLLGRTGRLQEA 440



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 9/235 (3%)

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG--AQRVFDR 234
           +SS+ S      NL   K+IHG+ ++   D++ Y+ T +I T  K G      A+RV + 
Sbjct: 49  VSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEP 108

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
            + R+  +WTA+I  YA  G   +A++++  M    I P   TF+A+L AC     ++  
Sbjct: 109 VQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLG 168

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
              F+A + +      V     M+ +  +   I  A +   +MP +     W  L+   +
Sbjct: 169 RQ-FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS-WTELIAAYA 226

Query: 355 ISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             G++E        LFE  P ++   +  M   ++Q  +  EA    ++M++SG+
Sbjct: 227 RVGNMECAA----ELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 28/275 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SW  +IA Y++ G  E    LF  +        D V   +++    Q++    
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTK-----DMVAWTAMVTGFAQNAKPQE 264

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALL----DEMSDKDEVSY-SAI 114
            +E  + + +S I+ D       I   A+ G+  YA RA+        S  D V   SA+
Sbjct: 265 ALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSAL 324

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPN 173
           I  Y   G VE+A+++F  M    + T++++I GL  + R +  L L   M   + ++PN
Sbjct: 325 IDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPN 384

Query: 174 AVTISSIFSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
            VT        SH   +  G+++       + V+   D      T ++D   +TG L   
Sbjct: 385 TVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH----YTCMVDLLGRTGRL--- 437

Query: 229 QRVFDRFKGRSLI----IWTAIISAYAAHGDASKA 259
           Q   +  K  S+     +W A++ A   H +   A
Sbjct: 438 QEALELIKTMSVEPHGGVWGALLGACRIHNNPEIA 472


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 242/455 (53%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V+W+++I G+       +   LF+ ML   +      ++ S L+AC     +  
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S +  DL   N+L+ MYAK G                             
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAG----------------------------- 389

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A+ LF  M      +++A++SG VQN R E    + ++MQA  V P+A T+ S+
Sbjct: 390 --LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 447

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G+  HG  +         +  A+ID YAK G +  +++VF+    R +
Sbjct: 448 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 507

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF EM N G  PD VTF  +LSAC+HSGLV +    F+ 
Sbjct: 508 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 567

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY CMV +LSR   + EA EF+  MP++   +VW ALL    +  +++
Sbjct: 568 MGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 627

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + E+ PE TGN+++++N+YS AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 628 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S  +S +IY  L+ +L  +++ GY
Sbjct: 688 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 722



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 201/486 (41%), Gaps = 82/486 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA-LFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+V+WN+M+AGY+  G Y    A L    +    LRP+  T+V++L    Q   + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 60  FGMEVHNFVI----------ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV 109
            G  VH + I          +S +   + +  AL+ MYAKCGSL YAR + D M  ++EV
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           ++SA+I G+++   + +A  LF+ M   GL                              
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL--------------------------- 338

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
              +  +I+S     +   +L+ G+++H    K+    ++    +++  YAK G +  A 
Sbjct: 339 ---SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287
            +FD    +  + ++A++S Y  +G A +A  +F +M    ++PD  T  +++ AC+H  
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI----------------- 327
               G       I   ++ +  I  ++       G +  +R++                 
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 515

Query: 328 --------SEATEF---VSKMPVKPSAKVWGALLYGASISGDVELGK---FVCDHLFEIE 373
                    EAT     ++ +   P    +  LL   S SG V  GK    V  H + + 
Sbjct: 516 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 575

Query: 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSG 433
           P    +YI M +L S+ G  DEA    + M      +   R W+   G  + +   D   
Sbjct: 576 PR-MEHYICMVDLLSRGGFLDEAYEFIQSMP----LRADVRVWVALLGACRVYKNIDLGK 630

Query: 434 DKSEQI 439
             S  I
Sbjct: 631 KVSRMI 636



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 166/373 (44%), Gaps = 52/373 (13%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           D+ ++N +I  YS          L  +R ML   V  P+  T    L+AC   +D   G 
Sbjct: 87  DVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRV-APNNYTFPFALKACSALADHHCGR 145

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H   I + ++ DL++  AL+ MY KC  L  A  +   M  +D V+++A+++GY  HG
Sbjct: 146 AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 205

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR-EMQASGVRPNAVTISSIF 181
                                           H AV  L+  +MQ   +RPNA T+ ++ 
Sbjct: 206 MY------------------------------HHAVAHLLSMQMQMHRLRPNASTLVALL 235

Query: 182 SLFSHFSNLKGGKEIHGYAVK-----NRYDRN-----IYVATAIIDTYAKTGFLHGAQRV 231
            L +    L  G  +H Y ++     NR  ++     + + TA++D YAK G L  A+RV
Sbjct: 236 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 295

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGL 290
           FD    R+ + W+A+I  +      ++A  LF  ML  G+    P +  + L ACA    
Sbjct: 296 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 355

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           + +  +  +A+  + G+   +     ++ + ++A  I +A     +M VK +        
Sbjct: 356 L-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS------ 408

Query: 351 YGASISGDVELGK 363
           Y A +SG V+ G+
Sbjct: 409 YSALVSGYVQNGR 421



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV--LDLVREMQASGVRPNAV 175
           ++  G + +A  LF  +  P + T+N +I     ++   A   L L R M    V PN  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T        S  ++   G+ IH +A+      +++V+TA++D Y K   L  A  +F   
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVS--LFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             R L+ W A+++ YA HG    AV+  L  +M  + ++P+  T  A+L   A  G
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 242


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 240/439 (54%), Gaps = 33/439 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K  + +WN++++GY Q   ++E   LFR M +  V +PD  T+  +L +C +  +   
Sbjct: 277 IPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNV-QPDRTTLAVILSSCSRLGNFEL 335

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +   +  D+++ + LI +Y+KCG +  A  + + M+++D V           
Sbjct: 336 GKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVV----------- 384

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++  E   D +++M+ +G+ P   + +S+
Sbjct: 385 --------------------CWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASM 424

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +L +  S++  G+++H   +K+ YD+N+YV  ++ID YAK+G +  A+  F+    ++L
Sbjct: 425 INLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNL 484

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVD+A   FN+
Sbjct: 485 VAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNS 544

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P VEHY C++  L+RA R +E    + KMP K    +W  LL    +  + E
Sbjct: 545 MESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAE 604

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F   HLF ++P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SW+   
Sbjct: 605 LGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHK 664

Query: 421 GGLQSF-VAKDTSGDKSEQ 438
            G ++F VA D   D  E+
Sbjct: 665 DGSRAFMVADDLGTDVGER 683



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 167/370 (45%), Gaps = 36/370 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSWN++IA  ++ G   E   +++ ML    L P   T+ SVL ACG  + +  
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEG-LAPTNFTLASVLSACGAVAALDD 59

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H   ++  +    ++ N L+GMY KCGS+  A  L D M   +EVS++A++ G   
Sbjct: 60  GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 119

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD--LVREMQASGVRPNAVTIS 178
            G V+ A+ LF  M R G+      +S ++         D  + R +Q +          
Sbjct: 120 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLA---------- 169

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
                          + IH   V+  +  + +V  +++D YAK   +  A +VF+     
Sbjct: 170 ---------------QSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSV 214

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S++ W  +I+ Y   G   +A+ +   M  +G +P+ VT++ +L++C  +  V  A  +F
Sbjct: 215 SIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMF 274

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASI 355
           + +      +PSV  +  ++    +     E  +   +M    V+P       +L   S 
Sbjct: 275 DKIP-----KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSR 329

Query: 356 SGDVELGKFV 365
            G+ ELGK V
Sbjct: 330 LGNFELGKQV 339


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 242/455 (53%), Gaps = 31/455 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ V+W+++I G+       +   LF+ ML   +      ++ S L+AC     +  
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H  + +S +  DL   N+L+ MYAK G                             
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAG----------------------------- 389

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              +++A+ LF  M      +++A++SG VQN R E    + ++MQA  V P+A T+ S+
Sbjct: 390 --LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 447

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               SH + L+ G+  HG  +         +  A+ID YAK G +  +++VF+    R +
Sbjct: 448 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 507

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I+ Y  HG   +A +LF EM N G  PD VTF  +LSAC+HSGLV +    F+ 
Sbjct: 508 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 567

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY CMV +LSR   + EA EF+  MP++   +VW ALL    +  +++
Sbjct: 568 MRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 627

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK V   + E+ PE TGN+++++N+YS AGR+DEA  VR   K  G  K PG SWIE +
Sbjct: 628 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G L +FV  D S  +S +IY  L+ +L  +++ GY
Sbjct: 688 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 722



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 115/495 (23%), Positives = 202/495 (40%), Gaps = 100/495 (20%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA-LFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M  RD+V+WN+M+AGY+  G Y    A L    +    LRP+  T+V++L    Q   + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 60  FGMEVHNFVI----------ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV 109
            G  VH + I          +S +   + +  AL+ MYAKCGSL YAR + D M  ++EV
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 110 SYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169
           ++SA+I G+++   + +A  LF+ M   GL                              
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL--------------------------- 338

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
              +  +I+S     +   +L+ G+++H    K+    ++    +++  YAK G +  A 
Sbjct: 339 ---SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 230 RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287
            +FD    +  + ++A++S Y  +G A +A  +F +M    ++PD  T  +++ AC+H  
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
               G       I   ++ +  I  +      ++ + ++  RI  + +  + MP +    
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNA------LIDMYAKCGRIDLSRQVFNMMPSRDIVS 509

Query: 345 VWGALLYGASISGDVELGK--------------------FVC--------------DHLF 370
            W  ++ G  I G   LGK                    F+C               H F
Sbjct: 510 -WNTMIAGYGIHG---LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 565

Query: 371 EIEPENTG------NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
            +     G      +YI M +L S+ G  DEA    + M      +   R W+   G  +
Sbjct: 566 HVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMP----LRADVRVWVALLGACR 621

Query: 425 SFVAKDTSGDKSEQI 439
            +   D     S  I
Sbjct: 622 VYKNIDLGKKVSRMI 636



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 166/373 (44%), Gaps = 52/373 (13%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           D+ ++N +I  YS          L  +R ML   V  P+  T    L+AC   +D   G 
Sbjct: 87  DVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRV-APNNYTFPFALKACSALADHHCGR 145

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
            +H   I + ++ DL++  AL+ MY KC  L  A  +   M  +D V+++A+++GY  HG
Sbjct: 146 AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 205

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR-EMQASGVRPNAVTISSIF 181
                                           H AV  L+  +MQ   +RPNA T+ ++ 
Sbjct: 206 MY------------------------------HHAVAHLLSMQMQMHRLRPNASTLVALL 235

Query: 182 SLFSHFSNLKGGKEIHGYAVK-----NRYDRN-----IYVATAIIDTYAKTGFLHGAQRV 231
            L +    L  G  +H Y ++     NR  ++     + + TA++D YAK G L  A+RV
Sbjct: 236 PLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 295

Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGL 290
           FD    R+ + W+A+I  +      ++A  LF  ML  G+    P +  + L ACA    
Sbjct: 296 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 355

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           + +  +  +A+  + G+   +     ++ + ++A  I +A     +M VK +        
Sbjct: 356 L-RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS------ 408

Query: 351 YGASISGDVELGK 363
           Y A +SG V+ G+
Sbjct: 409 YSALVSGYVQNGR 421



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV--LDLVREMQASGVRPNAV 175
           ++  G + +A  LF  +  P + T+N +I     ++   A   L L R M    V PN  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T        S  ++   G+ IH +A+      +++V+TA++D Y K   L  A  +F   
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVS--LFNEMLNNGIQPDPVTFTAVLSACAHSG 289
             R L+ W A+++ YA HG    AV+  L  +M  + ++P+  T  A+L   A  G
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 242


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 243/461 (52%), Gaps = 33/461 (7%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V +N++I+GY+      +   +FR M  + V   D VT++ ++  C     +  G  +H 
Sbjct: 122 VCYNALISGYTANSKVTDAAYMFRRMKETGV-SVDSVTMLGLVPLCTVPEYLWLGRSLHG 180

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
             ++  +  ++ + N+ I MY KCGS                               VE 
Sbjct: 181 QCVKGGLDSEVAVLNSFITMYMKCGS-------------------------------VEA 209

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
              LF  M   GL TWNAVISG  QN     VL+L  +M++SGV P+  T+ S+ S  +H
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
               K G E+      N +  N++V+ A I  YA+ G L  A+ VFD    +SL+ WTA+
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAM 329

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           I  Y  HG     + LF++M+  GI+PD   F  VLSAC+HSGL DK  ++F AM  +Y 
Sbjct: 330 IGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 389

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
           ++P  EHY+C+V +L RA R+ EA EF+  MPV+P   VWGALL    I  +V++ +   
Sbjct: 390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAF 449

Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
             + E EP N G Y++M+N+YS +   +   R+R  M+E    K PG S++E  G +  F
Sbjct: 450 AKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLF 509

Query: 427 VAKDTSGDKSEQIYLILERL-LGLMREEGYVLLDEVEEESA 466
           +A D S +++E+++ +L+ L   +M   G +  D  EE S+
Sbjct: 510 LAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRGEEVSS 550



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 182/400 (45%), Gaps = 39/400 (9%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN  +   +    + E  +L+R ML S    PD  +   +L++C   S  V G ++H  V
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGS-SPDAFSFPFILKSCASLSLPVSGQQLHCHV 79

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGYMVHGFVEK 126
            +   + + ++  ALI MY KCG +  AR + +E   S +  V Y+A+ISGY  +  V  
Sbjct: 80  TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F+ MK  G+S  +  + GLV                         T+     L   
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVP----------------------LCTVPEYLWL--- 174

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
                 G+ +HG  VK   D  + V  + I  Y K G +   +R+FD    + LI W A+
Sbjct: 175 ------GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAV 228

Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
           IS Y+ +G A   + L+ +M ++G+ PDP T  +VLS+CAH G      ++   +    G
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESN-G 287

Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
             P+V      + + +R   +++A      MPVK S   W A++    + G  E+G  + 
Sbjct: 288 FVPNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLF 346

Query: 367 DHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
           D + +  I P+    ++++ +  S +G  D+   +   MK
Sbjct: 347 DDMIKRGIRPDG-AVFVMVLSACSHSGLTDKGLELFRAMK 385



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  + +++WN++I+GYSQ G   +   L+ +M +S V  PD  T+VSVL +C        
Sbjct: 217 MPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVC-PDPFTLVSVLSSCAHLGAKKI 275

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G EV   V  +    ++++ NA I MYA+CG+L  ARA+ D M  K  VS++A+I  Y +
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV----LDLVREMQ 166
           HG  E  + LF  M + G+    AV   ++    H  +    L+L R M+
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 385


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 243/424 (57%), Gaps = 11/424 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M++GY+QGG  EE   LF +ML+   ++PD  T  +V+ +C    D   
Sbjct: 211 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCL 270

Query: 61  GME-VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM---SDKDEVSYSAIIS 116
               V     +   + + ++  AL+ M+AKCG+L+ A  + +++     +  V ++A+IS
Sbjct: 271 SESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 330

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS--GVRPNA 174
            Y   G +  A  LF  M +    +WN++I+G  QN      + L  EM +S    +P+ 
Sbjct: 331 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 390

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           VT+ S+FS   H   L  G         N    +I V  ++I+ Y++ G +  A  +F  
Sbjct: 391 VTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQE 450

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R L+ +  +IS +A HG   +++ L ++M  +GI+PD +T+ A+L+AC+H+GL+D+ 
Sbjct: 451 MATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEG 510

Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
             +F ++       P V+HYACM+ +L RA R+ EA + +  MP++P A ++G+LL   S
Sbjct: 511 QRLFESIKF-----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATS 565

Query: 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR 414
           I   VELG+     LF++EP N+GNY +++N+Y+ AGRW E D+VR+ M++ G+ K  G 
Sbjct: 566 IHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGL 625

Query: 415 SWIE 418
           SW+E
Sbjct: 626 SWLE 629



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 209/487 (42%), Gaps = 106/487 (21%)

Query: 5   DIVSWNSMIAGYSQGGFYEEC-KALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D+  +  M+  YSQ G + +   +LF+ ML    ++P+      ++++ G  S +     
Sbjct: 51  DVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLA-- 108

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
               V++S    D ++ N ++G+YAK G +++AR L DEM D+    ++ +ISGY   G 
Sbjct: 109 ---HVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGN 165

Query: 124 VEKAMDLFQVM--------------------KRPGLST---------------WNAVISG 148
            E+A  LF VM                    K+  L T               WNA++SG
Sbjct: 166 EEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSG 225

Query: 149 LVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEI-HGYAVKNRYD 206
             Q    E  + L  +M + G V+P+  T +++ S  S   +    + I      K  + 
Sbjct: 226 YAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFR 285

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDR---FKGRSLIIWTAIISAYA------------ 251
            N +V TA++D +AK G L  A ++F++   +K RS + W A+ISAYA            
Sbjct: 286 PNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLF 345

Query: 252 -------------------AHGDASKAVSLFNEMLN--NGIQPDPVTFTAVLSACAHSGL 290
                               +G++ KA+ LF EM++  +  +PD VT  +V SAC H G 
Sbjct: 346 DKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGE 405

Query: 291 VDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           +    W +  ++     IQ S+  Y  ++ + SR   + +A     +M  +        +
Sbjct: 406 LGLGNWAV--SILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR------DLV 457

Query: 350 LYGASISGDVELGKFVCDHLFE------------IEPENTGNYIIMANLYSQAGRWDEAD 397
            Y   ISG  E G     H  E            IEP+    YI +    S AG  DE  
Sbjct: 458 SYNTLISGFAEHG-----HGMESIELLSKMKEDGIEPDRI-TYIAILTACSHAGLLDEGQ 511

Query: 398 RVREQMK 404
           R+ E +K
Sbjct: 512 RLFESIK 518



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 30/288 (10%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAV-LDLVREM-QASGVRPNAVTISSIFSLFSHF 187
           +F     P +  +  ++    Q   H  V + L + M Q   ++PNA       S +S  
Sbjct: 43  IFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNA-------SFYSVM 95

Query: 188 SNLKGGKEIH--GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
               G + +    + +K+ YDR+ YV   I+  YAK G +  A+++FD    R++  W  
Sbjct: 96  MKSAGSESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNV 155

Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
           +IS Y   G+  +A +LF+ M +  I  + +T+T +++  A  G +  A   F+ M    
Sbjct: 156 MISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMP--- 212

Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKM----PVKPSAKVWGALLYGASISGDVEL 361
             + SV  +  M+   ++     E     + M     V+P    W  ++   S  GD  L
Sbjct: 213 --ERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCL 270

Query: 362 GKFVCDHLFE---IEPENTGNYII---MANLYSQAGRWDEADRVREQM 403
            + +   L +     P    NY +   + +++++ G  + A ++ EQ+
Sbjct: 271 SESIVRKLDDKVGFRP----NYFVKTALLDMHAKCGNLEAAHKIFEQL 314


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 254/468 (54%), Gaps = 8/468 (1%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD++SW S+IA YS+    +E    F+ ML+  +  PD VTV+ VL AC Q  D+  G  
Sbjct: 141 RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGI-APDDVTVIGVLSACSQLKDLELGCS 199

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMVHG 122
           +H  V E  + M   +  ALI MYAKCG   +AR + D +   +   S++AII GY  HG
Sbjct: 200 LHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHG 259

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V+ A  LF  M+   + T+N++I+G + + +    L L   M+   +R +  T+ S+ S
Sbjct: 260 HVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLS 319

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +    L  G+ +H        + +IY+ TA++D Y K G ++ A  VF R   R +  
Sbjct: 320 ACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHA 379

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           WTA+I+  A +G     +  F +M  +G QP+PV++ AVL+AC+HS L+++    F+ M 
Sbjct: 380 WTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMR 439

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             Y I P +EHY CM+ +L R+  + EA + V  MP++P++ +W ++L    +   ++L 
Sbjct: 440 ILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLA 499

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +   +HL +IEP+    Y+ + N+   + +W++A ++R  M+E  + K  G S +  +G 
Sbjct: 500 QCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQ 559

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           +  FV  D S  +  +I  +LE +   ++  GY      V +D  EEE
Sbjct: 560 VHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEE 607



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 203/422 (48%), Gaps = 42/422 (9%)

Query: 5    DIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSDIVFG 61
            D++SWNS+++ Y+  G  +E     ++ML     P +R    + VS+L   G++ D   G
Sbjct: 899  DVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVR----SFVSLLALSGKTGDWQLG 954

Query: 62   MEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            +++H  V +       + +   LI MY KC   D++ A+ +E+                 
Sbjct: 955  VQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSI-------------- 1000

Query: 121  HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                              L   N++I+  +  N  +A L+++  M   GV P+ VT S+ 
Sbjct: 1001 -----------------ALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSAT 1043

Query: 181  FSL--FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
                  S   +L   + +H   VK  ++ ++ V +++I  YA  G L  +  +F+     
Sbjct: 1044 MKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDP 1103

Query: 239  SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            ++I +TAIISA A +GD ++A+ LF++M+++G++PD VTF   ++ C  +G+ ++   + 
Sbjct: 1104 NVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVI 1163

Query: 299  NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
              M     + P   H+ACMV +LSR   + EA E + + P++   K W +LL      G+
Sbjct: 1164 ELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGE 1223

Query: 359  VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
              LGK   + L ++  ++    + ++N ++  G  + A R++E M      K  G S IE
Sbjct: 1224 NVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKE-MTNVKEVKKSGHSLIE 1282

Query: 419  CS 420
             S
Sbjct: 1283 VS 1284



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 10/278 (3%)

Query: 28  LFREMLNSPVLRPDGVTVVSVLQACGQSSD--IVFGMEVHNFVIESHIKMDL-WICNALI 84
           LFR M  + V RPDG T    L  C  SS    +    +H   + + +     ++ N+LI
Sbjct: 31  LFRRMRRAAV-RPDGFTF-HFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLI 88

Query: 85  GMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNA 144
            MY + G     R   DE+  KD VS++ +ISG    G +  A  L        + +W +
Sbjct: 89  HMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTS 148

Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
           +I+   + +R +  +D  + M + G+ P+ VT+  + S  S   +L+ G  +H    +  
Sbjct: 149 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKG 208

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLIIWTAIISAYAAHGDASKAVSLF 263
              +  +  A+ID YAK G    A+ VFD   +GR    W AII  Y  HG    A SLF
Sbjct: 209 MSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLF 268

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           ++M    I    +TF ++++   HSG + +A  +F  M
Sbjct: 269 DQMEVRDI----ITFNSMITGYIHSGQLREALLLFMNM 302



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 42/279 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDI+++NSMI GY   G   E   LF  M     LR D  TVVS+L AC     +  
Sbjct: 271 MEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD-LRVDNFTVVSLLSACASLGALPQ 329

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  +    ++ D++I  AL+ MY KCG ++ A  +   M  +D  +++A+I+G   
Sbjct: 330 GRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAF 389

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G  +  ++ F                                +M+  G +PN V+  ++
Sbjct: 390 NGMGKAGLEYFY-------------------------------QMRCDGFQPNPVSYIAV 418

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236
            +  SH   L  G+    Y  + R   NI+        +ID   ++G L  A  +     
Sbjct: 419 LTACSHSCLLNEGRL---YFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 475

Query: 237 GR-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
            + + +IW +I+SA   H     A      +L   I+PD
Sbjct: 476 MQPNSVIWASILSACRVHKRIDLAQCAAEHLLK--IEPD 512



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/151 (17%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           +++ N +I+G +++   +    + R M ASG+R    T S+I  + S +  L    ++HG
Sbjct: 700 VASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL----QLHG 755

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
             +      N +V +A+++ Y      H A  +F     ++  +   ++          +
Sbjct: 756 RVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEE 815

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
            +  F +M    ++ + +++   +  C  +G
Sbjct: 816 LICCFLDMRRQYLELNGLSYCYAMKGCYQNG 846


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 257/470 (54%), Gaps = 37/470 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D++ W+ MI+ Y+Q    +E   LF  M  S V+ P+  T  SVLQAC     +  
Sbjct: 266 MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNL 325

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+ V++  +  ++++ NAL+ +YAKCG ++ +  L    ++K+EV+++ II GY+ 
Sbjct: 326 GNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQ 385

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  EKA++LF                                 M    ++P  VT SS+
Sbjct: 386 LGDGEKALNLFS-------------------------------NMLGLDIQPTEVTYSSV 414

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    L+ G++IH   +K  Y+++  VA ++ID YAK G +  A+  FD+   +  
Sbjct: 415 LRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDE 474

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+I  Y+ HG   +A++LF+ M  +  +P+ +TF  VLSAC+++GL+DK    F +
Sbjct: 475 VSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKS 534

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P +EHY CMV +L R+ +  EA + + ++P +PS  VW ALL    I  +++
Sbjct: 535 MLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLD 594

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LGK     + E+EP++   +++++N+Y+ A RWD    VR+ MK+  + K PG SW+E  
Sbjct: 595 LGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQ 654

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------VLLDEVEEE 464
           G +  F   DTS    + I+ +LE L    R+ GY      VLLD  ++E
Sbjct: 655 GVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDE 704



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 35/355 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW  M+A Y++   +E+   LF +M      RP+  T+ + L++C        G  
Sbjct: 168 KDMVSWTGMVACYAENYCHEDSLLLFCQM-RIMGYRPNNFTISAALKSCNGLEAFKVGKS 226

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH   ++     DL++  AL+ +Y K G +  A+   +EM   D + +S +IS Y     
Sbjct: 227 VHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDK 286

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
            ++A++LF  M+                              Q+S V PN  T +S+   
Sbjct: 287 SKEALELFCRMR------------------------------QSSVVVPNNFTFASVLQA 316

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  G +IH   +K   D N++V+ A++D YAK G +  + ++F     ++ + W
Sbjct: 317 CASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAW 376

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN-AMS 302
             II  Y   GD  KA++LF+ ML   IQP  VT+++VL A A    ++    I +  + 
Sbjct: 377 NTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIK 436

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             Y     V +   ++ + ++  RI +A     KM  K     W AL+ G SI G
Sbjct: 437 TMYNKDSVVAN--SLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG 488



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 165/368 (44%), Gaps = 26/368 (7%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF---- 60
           D+ + N ++  Y   GF E+   LF EM   P+   + V+ V++ Q   +S         
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEM---PL--TNTVSFVTLAQGFSRSHQFQRARRL 91

Query: 61  -------GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSA 113
                  G EV+ FV  + +K+       L+ M      L     +       D    +A
Sbjct: 92  LLRLFREGYEVNQFVFTTLLKL-------LVSMDLADTCLSVHAYVYKLGHQADAFVGTA 144

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
           +I  Y V G V+ A  +F  +    + +W  +++   +N  HE  L L  +M+  G RPN
Sbjct: 145 LIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPN 204

Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             TIS+     +     K GK +HG A+K  YDR++YV  A+++ Y K+G +  AQ+ F+
Sbjct: 205 NFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFE 264

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVD 292
                 LI W+ +IS YA    + +A+ LF  M  +  + P+  TF +VL ACA   L++
Sbjct: 265 EMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLN 324

Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
               I + +  + G+  +V     ++ V ++   I  + +  +    K     W  ++ G
Sbjct: 325 LGNQIHSCVL-KVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEV-AWNTIIVG 382

Query: 353 ASISGDVE 360
               GD E
Sbjct: 383 YVQLGDGE 390


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/422 (33%), Positives = 227/422 (53%), Gaps = 36/422 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+++W  MI GY + G  E    L R M    V RP+ VT+ S++ ACG +  +  
Sbjct: 279 MERRDVITWTCMINGYIEDGDVENALELCRLMQFEGV-RPNAVTIASLVSACGDALKLND 337

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H + I   +  D+ I  +LI MYAKC  +D                          
Sbjct: 338 GKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLC------------------------ 373

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                    +F    R     W+A+I+G VQN      LDL + M+   V PN  T++S+
Sbjct: 374 -------FRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSL 426

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD----RFK 236
              ++  ++L+    IH Y  K  +  ++  AT ++  Y+K G L  A ++F+    + K
Sbjct: 427 LPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHK 486

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            + +++W A+IS Y  HGD   A+ +F EM+ +G+ P+ +TFT+ L+AC+HSGLV++   
Sbjct: 487 SKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLT 546

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
           +F+ M   Y       HY C+V +L RA R+ EA   ++ +P +P++ +WGALL      
Sbjct: 547 LFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTH 606

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
            +V+LG+   + LFE+EPENTGNY+++AN+Y+  GRW + ++VR  M+  GL K PG S 
Sbjct: 607 ENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGLRKKPGHST 666

Query: 417 IE 418
           IE
Sbjct: 667 IE 668



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 174/361 (48%), Gaps = 36/361 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD++SWN+MI+GY + G+  +   +F  M+N  V  PD  T+VS+L  CG    +  
Sbjct: 178 MKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGV-DPDHATIVSMLPVCGHLKGLEM 236

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  V E  +   + + NAL+ MY KCG +D AR +   M  +D ++++ +I+GY+ 
Sbjct: 237 GRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIE 296

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G VE A+                               +L R MQ  GVRPNAVTI+S+
Sbjct: 297 DGDVENAL-------------------------------ELCRLMQFEGVRPNAVTIASL 325

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S       L  GK +HG+A++ +   +I + T++I  YAK   +    RVF        
Sbjct: 326 VSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHT 385

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
             W+AII+    +     A+ LF  M    ++P+  T  ++L A A    + +  +I   
Sbjct: 386 GPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCY 445

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK---VWGALLYGASISG 357
           ++ + G   S++    +V V S+   +  A +  + +  K  +K   +WGAL+ G  + G
Sbjct: 446 LT-KTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHG 504

Query: 358 D 358
           D
Sbjct: 505 D 505



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M +  ++S+N +I  Y + G Y +   +F  M++  +   PDG T   V +A G+   I 
Sbjct: 75  MPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSIS 134

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G+ +H  ++ S   MD ++ NAL+ MY   G ++ AR + D M ++D +S++ +ISGY 
Sbjct: 135 LGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYY 194

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
            +G++  A+ +F          W                      M   GV P+  TI S
Sbjct: 195 RNGYMNDALMMFD---------W----------------------MVNEGVDPDHATIVS 223

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           +  +  H   L+ G+ +H    + R    I V  A+++ Y K G +  A+ VF R + R 
Sbjct: 224 MLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRD 283

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           +I WT +I+ Y   GD   A+ L   M   G++P+ VT  +++SAC
Sbjct: 284 VITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSAC 329



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 134/315 (42%), Gaps = 37/315 (11%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
           I + L   YA CG + YAR L DEM     +SY+ +I  Y+  G    A+++F  M   G
Sbjct: 51  ILSTLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEG 110

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           +                                P+  T   +        ++  G  IHG
Sbjct: 111 IK-----------------------------CVPDGYTYPFVAKAAGELKSISLGLVIHG 141

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
             +++ +  + YV  A++  Y   G +  A+ VFD  K R +I W  +IS Y  +G  + 
Sbjct: 142 RILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMND 201

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           A+ +F+ M+N G+ PD  T  ++L  C H   ++   ++ + +  +  +   +E    +V
Sbjct: 202 ALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNV-HKLVEEKRLGDKIEVKNALV 260

Query: 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL-FE-IEPEN 376
            +  +  R+ EA     +M  +     W  ++ G    GDVE    +C  + FE + P  
Sbjct: 261 NMYLKCGRMDEARFVFGRME-RRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRP-- 317

Query: 377 TGNYIIMANLYSQAG 391
             N + +A+L S  G
Sbjct: 318 --NAVTIASLVSACG 330



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 8/118 (6%)

Query: 173 NAVTISSIFSLFSHFS---NLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGA 228
           NA+++    SL +H++   ++   K +H + +   R   +I    ++  TYA  G +  A
Sbjct: 11  NALSVKQYQSLLNHYAATQSISKTKALHCHVITGGRVSGHILSTLSV--TYALCGHIAYA 68

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ--PDPVTFTAVLSA 284
           +++FD     SL+ +  +I  Y   G    A+++F  M++ GI+  PD  T+  V  A
Sbjct: 69  RKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKA 126


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 239/459 (52%), Gaps = 38/459 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V WN+M+ GY+Q G +E     FR M +  V+ P   TV  VL       D+  G  
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVV-PSRFTVTGVLSVFAVMGDLNNGRI 258

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F ++      + + N+LI MY KC                                 
Sbjct: 259 IHGFAMKMGYDSGVAVSNSLIDMYGKCKC------------------------------- 287

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A+++F++M+   + +WN+++S   Q   H+  L L+  M  +G++P+ VT++++   
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRN------IYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            SH + L  G+EIHGY + +   ++      + +  A+ID YAK G +  A  VF+R   
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSN 407

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + +  W  +I  Y  HG  ++A+ +F+ M    ++PD VTF  VLSAC+H+G V +  + 
Sbjct: 408 KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF 467

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              M  +Y + P++EHY C++ +L RA ++ EA E    MP++ +  VW ALL    +  
Sbjct: 468 LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHK 527

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
              L +     +FE+EPE+ G+Y++M+N+Y   GR++E   VR  M++  + K PG SWI
Sbjct: 528 HAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWI 587

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E   G+  FV+ D +  ++  IY  L  L   +RE GYV
Sbjct: 588 ELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREHGYV 626



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 42/268 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++DI SWNS+++ + Q G ++    L   ML + + +PD VTV +VL AC   + ++ 
Sbjct: 298 MREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGI-QPDLVTVTTVLPACSHLAALMH 356

Query: 61  GMEVHNFVIESHIKM------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G E+H ++I S +        D+ + NA+I MYAKCGS+  A  + + MS+KD  S++ +
Sbjct: 357 GREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIM 416

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I GY +HG+  +A+++F  M                             E+Q   ++P+ 
Sbjct: 417 IMGYGMHGYGNEALEMFSRMC----------------------------EVQ---LKPDE 445

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVF 232
           VT   + S  SH   +  G+      +K++YD    I   T +ID   + G L  A  + 
Sbjct: 446 VTFVGVLSACSHAGFVSQGRNFL-VQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELA 504

Query: 233 DRFKGRS-LIIWTAIISAYAAHGDASKA 259
                 +  ++W A+++A   H  A  A
Sbjct: 505 LTMPIEANPVVWRALLAACRLHKHAVLA 532



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 133/299 (44%), Gaps = 38/299 (12%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALL-D 101
           T ++ LQA     ++  G E+H++ +I   +   L I  +LI MY+KC  +++A ++  D
Sbjct: 39  TCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSD 97

Query: 102 EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
              + +  +++AIISG++ +GF E+  + +Q M+  G+          ++     A LD+
Sbjct: 98  PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK-----ACLDV 152

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
           +                               K+IHG   K   + ++++ +A+++ Y K
Sbjct: 153 LEI-----------------------------KKIHGLLFKFGLELDVFIGSALVNCYLK 183

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G +  AQ  F+    R +++W A+++ YA  G     +  F  M +  + P   T T V
Sbjct: 184 FGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGV 243

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
           LS  A  G ++    I +  + + G    V     ++ +  + + I +A E    M  K
Sbjct: 244 LSVFAVMGDLNNG-RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK 301



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N  T  +     +H  NL  GKEIH Y + N +  +    T++I+ Y+K   ++ A  +F
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 233 -DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
            D     ++  + AIIS +  +G   +    + +M N G+ PD  TF   + AC     +
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI 155

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
            K     + +  ++G++  V   + +V    +   +  A     ++P++    +W A++ 
Sbjct: 156 KK----IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVN 210

Query: 352 GASISGDVEL 361
           G +  G  E+
Sbjct: 211 GYAQIGQFEM 220


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 240/439 (54%), Gaps = 33/439 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + K  + +WN++++GY Q   ++E   LFR M +  V +PD  T+  +L +C +  +   
Sbjct: 378 IPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNV-QPDRTTLAVILSSCSRLGNFEL 436

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH+  +   +  D+++ + LI +Y+KCG +  A  + + M+++D V           
Sbjct: 437 GKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVV----------- 485

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISGL  ++  E   D +++M+ +G+ P   + +S+
Sbjct: 486 --------------------CWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASM 525

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +L +  S++  G+++H   +K+ YD+N+YV  ++ID YAK+G +  A+  F+    ++L
Sbjct: 526 INLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNL 585

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA +G   KAV LF  ML    +PD VTF AVL+ C+HSGLVD+A   FN+
Sbjct: 586 VAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNS 645

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI P VEHY C++  L+RA R +E    + KMP K    +W  LL    +  + E
Sbjct: 646 MESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAE 705

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+F   HLF ++P+N   Y++++N+Y+  GR  +A  VR  M   G+ K  G SW+   
Sbjct: 706 LGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHK 765

Query: 421 GGLQSF-VAKDTSGDKSEQ 438
            G ++F VA D   D  E+
Sbjct: 766 DGSRAFMVADDLGTDVGER 784



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 167/370 (45%), Gaps = 36/370 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VSWN++IA  ++ G   E   +++ ML    L P   T+ SVL ACG  + +  
Sbjct: 102 MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEG-LAPTNFTLASVLSACGAVAALDD 160

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G   H   ++  +    ++ N L+GMY KCGS+  A  L D M   +EVS++A++ G   
Sbjct: 161 GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 220

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD--LVREMQASGVRPNAVTIS 178
            G V+ A+ LF  M R G+      +S ++         D  + R +Q +          
Sbjct: 221 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLA---------- 270

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
                          + IH   V+  +  + +V  +++D YAK   +  A +VF+     
Sbjct: 271 ---------------QSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSV 315

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S++ W  +I+ Y   G   +A+ +   M  +G +P+ VT++ +L++C  +  V  A  +F
Sbjct: 316 SIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMF 375

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASI 355
           + +      +PSV  +  ++    +     E  +   +M    V+P       +L   S 
Sbjct: 376 DKIP-----KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSR 430

Query: 356 SGDVELGKFV 365
            G+ ELGK V
Sbjct: 431 LGNFELGKQV 440



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 106/224 (47%)

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V+ + +  D ++ N L+ +Y+  G   +A      +   +  SY+A IS     G +
Sbjct: 33  HARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDL 92

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
             A DL   M      +WN VI+ + ++      L++ + M   G+ P   T++S+ S  
Sbjct: 93  AAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSAC 152

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
              + L  G+  HG AVK   D + +V   ++  Y K G +  A R+FD     + + +T
Sbjct: 153 GAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFT 212

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           A++   A  G    A+ LF  M   GI+ DPV  ++VL ACA +
Sbjct: 213 AMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQA 256



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML 267
           N+Y   A I    + G L  A+ +  R   R+ + W  +I+A A  G   +A+ ++  ML
Sbjct: 75  NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGML 134

Query: 268 NNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
             G+ P   T  +VLSAC     +D      + ++ + G+         ++G+ ++   +
Sbjct: 135 QEGLAPTNFTLASVLSACGAVAALDDGRRC-HGLAVKVGLDGHQFVENGLLGMYTKCGSV 193

Query: 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           ++A      MP  P+   + A++ G +  G V+
Sbjct: 194 ADAVRLFDGMP-SPNEVSFTAMMGGLAQGGAVD 225


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDG------VTVVSVLQACGQSSDIVFGME 63
           N+MI  Y+Q   + +  A++  ML  P   PDG       T   +L+ACG ++ +  G +
Sbjct: 81  NAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQ 140

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V+ S       + N+LI MY + G L  A  + DEM ++D VS++ +IS +   G 
Sbjct: 141 VHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQ 200

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + KA  LF  M    + TW A++SG      +   +D  R MQ  G  P+ V+I ++   
Sbjct: 201 MRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPA 260

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ G+ I+ Y  ++    + ++  A+++ YAK G +  A ++FD    + +I W
Sbjct: 261 CAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISW 320

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           + +I   AAHG A +AV LF EM   G ++P+ +TF  +LSAC+++GLVD+    F+ M+
Sbjct: 321 STVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMN 380

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             YG++P VEHY C+V +L R+ +I  A + V  MPV   AKVWG+LL      GDV+  
Sbjct: 381 DVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTA 440

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
               + L E+EP++ GN +++AN+Y+ A RW +    R+ ++   + K PG S IE    
Sbjct: 441 VLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNV 500

Query: 423 LQSFVA 428
           ++ FVA
Sbjct: 501 VREFVA 506



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 72/312 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---------------------- 38
           M +RD+VSWN +I+ +++ G   +  ALF  M +  ++                      
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                    PD V++V+VL AC Q   +  G  ++ +     +     ICNAL+ MYAKC
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G +D A  L D M+DKD +S+S +I G   HG   +A+ LF  M++ G            
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEG------------ 347

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRN 208
                              VRPN +T   + S  S+   +  G   H   + + Y  +  
Sbjct: 348 ------------------KVRPNVITFVGLLSACSYAGLVDEGLS-HFDRMNDVYGVEPG 388

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI----IWTAIISAYAAHGDASKAVSLFN 264
           +     ++D   ++G +   +R  D  +   +     +W +++SA  +HGD   AV    
Sbjct: 389 VEHYGCVVDLLGRSGQI---RRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445

Query: 265 EMLNNGIQPDPV 276
            ++   ++PD V
Sbjct: 446 RLVE--LEPDDV 455



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 150/379 (39%), Gaps = 86/379 (22%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNA----- 174
           H  V  A  +F  ++ P L   NA+I    QN++H +AV   +R ++     P+      
Sbjct: 59  HRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGD 118

Query: 175 -VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +       + L+ GK++H + V++  D +  V  ++I+ Y + G L  A +VFD
Sbjct: 119 RFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFD 178

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN------------------------ 269
             + R ++ W  +ISA+A  G   KA +LFN M +                         
Sbjct: 179 EMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDA 238

Query: 270 -------GIQPDPVTFTAVLSACAH----------------------------------- 287
                  G +PD V+  AVL ACA                                    
Sbjct: 239 FRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAK 298

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA----TEFVSKMPVKPSA 343
            G +D+A  +F+ M+ +      V  ++ ++G L+   R  EA    TE   +  V+P+ 
Sbjct: 299 CGCIDQALQLFDGMADK-----DVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353

Query: 344 KVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVR 400
             +  LL   S +G V+ G    D +   + +EP    +Y  + +L  ++G+   A  + 
Sbjct: 354 ITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEP-GVEHYGCVVDLLGRSGQIRRALDLV 412

Query: 401 EQMKESGLAKIPGRSWIEC 419
             M     AK+ G     C
Sbjct: 413 RDMPVPADAKVWGSLLSAC 431



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
            +HG+ V+ R  ++ Y+AT I+        +  A RVF + +  +L +  A+I AYA + 
Sbjct: 32  RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91

Query: 255 DASKAVSLFNEMLNNGIQP-------DPVTFTAVLSAC 285
               AV+++  ML     P       D  T+  +L AC
Sbjct: 92  QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKAC 129


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/471 (35%), Positives = 258/471 (54%), Gaps = 38/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP--VLRPDGVTVVSVLQACGQSSDI 58
           M +RD  SW+++++ +++ G      A++R ML  P      +  T  S L A   +   
Sbjct: 119 MPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCA 178

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G E+H  V+   I  D  + +AL  MYAKCG +D AR++ D M  +D VS++A+    
Sbjct: 179 RAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAM---- 234

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                VE+  D     +R G                 E     VR M  SG++PN  T +
Sbjct: 235 -----VERYFD----ARRDG-----------------EGFRLFVR-MLRSGIQPNEFTYA 267

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +    + F++ K GK++HG   K+R   + +  +A++  Y+K G +  A RVF      
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKL 327

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            L+ WTA+IS YA +G   +A+  F+ +L +G +PD VTF  VLSACAH+GLVDK   IF
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIF 387

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +++  +YGI+ + +HYAC++ +LSR+     A E ++ M VKP+  +W +LL G  I  +
Sbjct: 388 HSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKN 447

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           V L ++  + LFEIEPEN   Y+ +AN+Y+  G +DE +  R  M+  G+ K+P  SWIE
Sbjct: 448 VRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIE 507

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F+  D    ++EQ+Y +L++L   MREEGYV     +L +VE+E
Sbjct: 508 VGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTGFVLHDVEDE 558



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 91  GSLDYARALLDEMSDKDEVSYSAIIS--GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
            +L  A ALL  +   D  SY+ +++  G    G    A  LF  M R    +W+A++S 
Sbjct: 75  ATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSA 133

Query: 149 LVQNNRHEAVL----DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
             ++ +  A L     ++RE  ++GV  N  T SS  +  +     + G+E+H + V+  
Sbjct: 134 HARHGQPRAALAIYRRMLREPGSAGV-DNEFTASSALAAATAARCARAGRELHCHVVRRG 192

Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
            D +  V +A+ D YAK G +  A+ VFDR   R ++ WTA++  Y       +   LF 
Sbjct: 193 IDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFV 252

Query: 265 EMLNNGIQPDPVTFTAVLSACA 286
            ML +GIQP+  T+  VL ACA
Sbjct: 253 RMLRSGIQPNEFTYAGVLRACA 274


>gi|147777522|emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
          Length = 513

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 238/417 (57%), Gaps = 6/417 (1%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
           ++S+  ++A +   G + +  +LF  M  S     D       L++C  +     G  +H
Sbjct: 11  LLSYTKLLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIH 70

Query: 66  NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
             V +  +  + ++  AL+ MY KC S+  AR L DE+  ++ V ++A+IS Y   G V 
Sbjct: 71  AHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVA 130

Query: 126 KAMDLFQVMK-RPGLSTWNAVISGL--VQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            A+ LF+VM   P  ST+NA+ISGL  +++   +A L   R M   G++ N +T+ ++  
Sbjct: 131 DALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKA-LSFYRRMGEVGLKQNLITLLALLP 189

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSL 240
                + L   KEIHGYA++N  D + ++ + +++ Y + G +  +Q VF       R +
Sbjct: 190 ACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQCVFQSISMSERDV 249

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+++ISAYA HGDA  A+  F +M    +QPD +TF  VL AC+H+GL D+A   F  
Sbjct: 250 VAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGR 309

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG++ S +HY+C+V  LSRA R+ EA E +  MPVK +AK WGALL      G+VE
Sbjct: 310 MCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKATAKTWGALLGACRTYGEVE 369

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           L +     LFE+EP+N  NY+++A +Y+  GR +EA R+R +M E G+   PG SW+
Sbjct: 370 LAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQRMRREMNEMGVKAAPGSSWM 426



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 122/315 (38%), Gaps = 41/315 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
           +  R+IV WN+MI+ Y+  G   +   LF  M   P                        
Sbjct: 108 IPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALS 167

Query: 38  ---------LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
                    L+ + +T++++L AC   + +    E+H + I + I     + + L+  Y 
Sbjct: 168 FYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYG 227

Query: 89  KCGSLDYARALLD--EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           +CG +  ++ +     MS++D V++S++IS Y +HG    A++ F+ M+   +       
Sbjct: 228 RCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITF 287

Query: 147 SGLVQNNRHEAVLD-----LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE-IHGYA 200
            G+++   H  + D       R  +  GV  ++   S +    S    L    E I G  
Sbjct: 288 LGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMP 347

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           VK    +          TY +      A R     +  +   +  +   YA+ G   +A 
Sbjct: 348 VKAT-AKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQ 406

Query: 261 SLFNEMLNNGIQPDP 275
            +  EM   G++  P
Sbjct: 407 RMRREMNEMGVKAAP 421


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/526 (31%), Positives = 275/526 (52%), Gaps = 65/526 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR----PDGVTVVSVLQACGQSS 56
           M +R++VSW +M+ GY Q G   E + LF +M    V+       G+  V  +       
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLF 163

Query: 57  DIVFGMEVHNFVIESHI---------------------KMDLWICNALIGMYAKCGSLDY 95
           DI   M V + V  +++                     + ++     +I  Y + G +D 
Sbjct: 164 DI---MPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDV 220

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN-- 153
           AR L + M +K+EVS++A++ GY   G +E+A +LF  M    +   NA+I G  QN   
Sbjct: 221 ARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEV 280

Query: 154 -RHEAVLDLVRE----------------------------MQASGVRPNAVTISSIFSLF 184
            +   V D +RE                            MQ  GV+ N  ++ S+ S+ 
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
           +  ++L  G+++H   VK+++D +++VA+ +I  Y K G L  A+++FDRF  + +++W 
Sbjct: 341 ASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWN 400

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
           +II+ YA HG   +A+ +F+EM ++G+  D VTF  VLSAC+++G V +  +IF +M  +
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSK 460

Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
           Y ++P  EHYACMV +L RA  +++A + + KMPV+  A +WGALL       ++ L + 
Sbjct: 461 YLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEV 520

Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
               L ++EP+N G YI+++N+Y+  GRW +   +R  M+   ++K PG SWIE    + 
Sbjct: 521 AAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVH 580

Query: 425 SFVAK-DTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
            F     T   +   I  +LE+L G++RE GY      +L +V+EE
Sbjct: 581 MFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEE 626



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 135/293 (46%), Gaps = 19/293 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ VSWN +I+GY +     E +  F  M    V+    +    V +     ++ +F
Sbjct: 73  MPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLF 132

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                  V+        W    ++G   +   +D AR L D M  KD V+ + +ISGY  
Sbjct: 133 WQMPEKNVVS-------W--TVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQ 183

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G + +A +LF  M R  + +W  +ISG VQN +    +D+ R++       N V+ +++
Sbjct: 184 EGRLAEARELFDEMPRRNVISWTTMISGYVQNGQ----VDVARKLFEVMPEKNEVSWTAM 239

Query: 181 FSLFSHFSNLKGGKEI-HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
              ++    ++   E+     VK      +    A+I  + + G +  A++VFD+ + + 
Sbjct: 240 LMGYTQGGRIEEASELFDAMPVK-----AVVACNAMILGFGQNGEVAKARQVFDQIREKD 294

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
              W+A+I  Y   G   +A++LF  M   G+Q +  +  +VLS CA    +D
Sbjct: 295 DGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLD 347



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 21/328 (6%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           N+ I  YA+ G ++ AR + DEM DK  VS++++++GY  +    +A  LF  M      
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN +ISG V+N     ++   R+   +    N V+ +++   +     L    E   + 
Sbjct: 80  SWNGLISGYVKNR----MVSEARKAFDTMPERNVVSWTAMVRGYVQ-EGLVSEAETLFWQ 134

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +    ++N+   T ++    +   +  A+ +FD    + ++  T +IS Y   G  ++A 
Sbjct: 135 MP---EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAR 191

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
            LF+EM    +    +++T ++S    +G VD A  +F  M  +  +      +  M+  
Sbjct: 192 ELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEKNEVS-----WTAMLMG 242

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
            ++  RI EA+E    MPVK       A++ G   +G+V   + V D + E   ++ G +
Sbjct: 243 YTQGGRIEEASELFDAMPVKAVVAC-NAMILGFGQNGEVAKARQVFDQIRE---KDDGTW 298

Query: 381 IIMANLYSQAGRWDEADRVREQMKESGL 408
             M  +Y + G   EA  +   M+  G+
Sbjct: 299 SAMIKVYERKGFEVEALNLFALMQREGV 326



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 141/333 (42%), Gaps = 63/333 (18%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           ++Y++ I+ Y   G +E A  +F  M   G+ +WN++++G  QNNR      L  +M   
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP-- 74

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
                                                +RN      +I  Y K   +  A
Sbjct: 75  -------------------------------------ERNTVSWNGLISGYVKNRMVSEA 97

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           ++ FD    R+++ WTA++  Y   G  S+A +LF +M    +    V++T +L      
Sbjct: 98  RKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQV 153

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
             +D+A  +F+ M  +      V     M+    +  R++EA E   +MP + +   W  
Sbjct: 154 RRIDEARGLFDIMPVK-----DVVARTNMISGYCQEGRLAEARELFDEMP-RRNVISWTT 207

Query: 349 LLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           ++ G   +G V++ +     LFE+ PE N  ++  M   Y+Q GR +EA  + + M    
Sbjct: 208 MISGYVQNGQVDVAR----KLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAM---- 259

Query: 408 LAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
               P ++ + C+  +  F  ++    K+ Q++
Sbjct: 260 ----PVKAVVACNAMILGF-GQNGEVAKARQVF 287


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/495 (31%), Positives = 261/495 (52%), Gaps = 43/495 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSWN+M+ GY++ G  ++   LFR M    V+  +  T+++ L  CG+  D   
Sbjct: 90  MPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWN--TIITALVQCGRIEDA-- 145

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                  + +     D+     ++   AK G ++ ARAL D+M  ++ VS++A+I+GY  
Sbjct: 146 -----QRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQ 200

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV---------- 170
           +  +++A+ LFQ M    + +WN +I+G +QN        L  EMQ   V          
Sbjct: 201 NRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGY 260

Query: 171 ----------------------RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
                                 +PN  T  ++    S  + L  G++IH    K  +  +
Sbjct: 261 VQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDS 320

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDR--FKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
             V +A+I+ Y+K G LH A+++FD      R LI W  +I+AYA HG   +A++LFNEM
Sbjct: 321 TCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEM 380

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
              G+  + VTF  +L+AC+H+GLV++ +  F+ +     IQ   +HYAC+V +  RA R
Sbjct: 381 QELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGR 440

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + EA+  +  +  +    VWGALL G ++ G+ ++GK V + + +IEP+N G Y +++N+
Sbjct: 441 LKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNM 500

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y+  G+W EA  VR +MK+ GL K PG SWIE    +Q FV  D    + E +  +L  L
Sbjct: 501 YASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPHSQYEPLGHLLHDL 560

Query: 447 LGLMREEGYVLLDEV 461
              M++ G +  D++
Sbjct: 561 HTKMKKAGDMPDDDL 575



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 138/289 (47%), Gaps = 21/289 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFR--EMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           M +RDI  W +MI GY + G   E + LF   +   + V     V          ++  +
Sbjct: 27  MPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERL 86

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
            + M + N V         W  N ++  YA+ G    A  L   M +++ VS++ II+  
Sbjct: 87  FYEMPLRNVVS--------W--NTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITAL 136

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           +  G +E A  LF  MK   + +W  +++GL +N R E    L  +M       N V+ +
Sbjct: 137 VQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVR----NVVSWN 192

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           ++ + ++    L    ++     +   +R++     +I  + + G L+ A+++F   + +
Sbjct: 193 AMITGYAQNRRLDEALQL----FQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEK 248

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACA 286
           ++I WTA+++ Y  HG + +A+ +F +ML  N ++P+  TF  VL AC+
Sbjct: 249 NVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACS 297



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 166/374 (44%), Gaps = 42/374 (11%)

Query: 68  VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIISGYMVHGFVEK 126
           V E   + D+ +   +I  Y KCG +  AR L D   + K+ V+++A+++GY+    V++
Sbjct: 23  VFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKE 82

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  LF  M    + +WN ++ G  +N   +  LDL R M       N V+ ++I +    
Sbjct: 83  AERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER----NVVSWNTIITALVQ 138

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
              ++  + +         DR++   T ++   AK G +  A+ +FD+   R+++ W A+
Sbjct: 139 CGRIEDAQRL----FDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAM 194

Query: 247 ISAYAAHGDASKAVSLF-----------NEMLNNGIQ----------------PDPVTFT 279
           I+ YA +    +A+ LF           N M+   IQ                 + +T+T
Sbjct: 195 ITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWT 254

Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT---EFVSK 336
           A+++     GL ++A  +F  M     ++P+   +  ++G  S    ++E     + +SK
Sbjct: 255 AMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISK 314

Query: 337 MPVKPSAKVWGALLYGASISGDVELG-KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
              + S  V  AL+   S  G++    K   D L       + N +I A  Y+  G   E
Sbjct: 315 TVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAA--YAHHGYGKE 372

Query: 396 ADRVREQMKESGLA 409
           A  +  +M+E G+ 
Sbjct: 373 AINLFNEMQELGVC 386



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 59/324 (18%)

Query: 80  CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK-RPG 138
           CN  I    + G +DYAR + +EM ++D   ++ +I+GY+  G + +A  LF     +  
Sbjct: 4   CNLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKN 63

Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198
           + TW A+++G ++ N+ +    L  EM                                 
Sbjct: 64  VVTWTAMVNGYIKFNQVKEAERLFYEMPL------------------------------- 92

Query: 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASK 258
                   RN+     ++D YA+ G    A  +F R   R+++ W  II+A    G    
Sbjct: 93  --------RNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIED 144

Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
           A  LF++M +     D V++T +++  A +G V+ A  +F+ M  +     +V  +  M+
Sbjct: 145 AQRLFDQMKDR----DVVSWTTMVAGLAKNGRVEDARALFDQMPVR-----NVVSWNAMI 195

Query: 319 GVLSRARRISEATEFVSKMPVK--PSAKVWGALLYGASISGDVELGKFVCDHLF-EIEPE 375
              ++ RR+ EA +   +MP +  PS   W  ++ G   +G++       + LF E++ +
Sbjct: 196 TGYAQNRRLDEALQLFQRMPERDMPS---WNTMITGFIQNGELNRA----EKLFGEMQEK 248

Query: 376 NTGNYIIMANLYSQAGRWDEADRV 399
           N   +  M   Y Q G  +EA RV
Sbjct: 249 NVITWTAMMTGYVQHGLSEEALRV 272


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 40/459 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKA----LFREMLNSPVLRPDGVTVVSVLQACGQSS 56
           M +RD VS+N +IA Y+    + +C A    LFREM      R   +   ++L   G   
Sbjct: 495 MPERDNVSYNVIIAAYA----WNQCAATVLRLFREMQKLGFDR-QVLPYATMLSVAGSLP 549

Query: 57  DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
           D+  G ++H  ++   +  +  + NALI MY+KCG LD A++     S+K  +S      
Sbjct: 550 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAIS------ 603

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
                                    W A+I+G VQN +HE  L L  +M+ +G+RP+  T
Sbjct: 604 -------------------------WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 638

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            SSI    S  + +  G+++H Y +++ Y  +++  + ++D YAK G L  A R FD   
Sbjct: 639 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 698

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            R+ I W A+ISAYA +G+A  A+ +F  ML+ G  PD VTF +VL+AC+H+GL D+   
Sbjct: 699 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMK 758

Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            F+ M  QY I P  EHYAC++  L R    S+  + + +MP K    +W ++L+   I 
Sbjct: 759 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIH 818

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+ EL +   D LF +EP +   Y+I++N+Y++AG+W++A  V++ M++ G+ K  G SW
Sbjct: 819 GNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 878

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           +E    + SF + D +    ++I   L+RL   M ++GY
Sbjct: 879 VEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 917



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 178/411 (43%), Gaps = 62/411 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           R+  +W  M+  ++  G   +  +LFR ML   V+ PD VTV +VL   G +        
Sbjct: 317 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTVLNLPGCTVP-----S 370

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII-------- 115
           +H F I+  +   +++CN L+  Y K G L  AR +  EM DKD V+Y+A++        
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 430

Query: 116 -------------SGYMVHG-------------------FVEKAM--------------D 129
                        +GY  H                    FV  ++               
Sbjct: 431 HTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRR 490

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF  M      ++N +I+    N     VL L REMQ  G     +  +++ S+     +
Sbjct: 491 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           +  GK+IH   V         +  A+ID Y+K G L  A+  F     +S I WTA+I+ 
Sbjct: 551 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 610

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           Y  +G   +A+ LF++M   G++PD  TF++++ A +   ++     + + +  + G + 
Sbjct: 611 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLI-RSGYKS 669

Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           SV   + +V + ++   + EA     +MP + S   W A++   +  G+ +
Sbjct: 670 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAK 719



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 138/328 (42%), Gaps = 31/328 (9%)

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G L  ARA+ D+M  K+  S + I+S Y   G +  A  LF        +TW  ++    
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG--KEIHGYAVKNRYDRN 208
              R    L L R M   GV P+ VT++++        NL G     +H +A+K   D +
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-------NLPGCTVPSLHPFAIKFGLDTH 383

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
           ++V   ++D Y K G L  A+RVF     +  + + A++   +  G  ++A+ LF  M  
Sbjct: 384 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRR 443

Query: 269 NGIQPDPVTF----------TAVLSACAHSGLVD--KAWDIFNAMSGQYGIQPSVEHYAC 316
            G    P+            T+VL+   ++ L+D     D  + M   +   P  ++ + 
Sbjct: 444 AGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSY 503

Query: 317 MVGVLSRARRISEATEF-----VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
            V + + A     AT       + K+        +  +L  A    DV +GK +   L  
Sbjct: 504 NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL 563

Query: 372 I---EPENTGNYIIMANLYSQAGRWDEA 396
           +     +  GN +I  ++YS+ G  D A
Sbjct: 564 LGLASEDLLGNALI--DMYSKCGMLDAA 589



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
           +G LH A+ +FD+   +++     I+SAY++ GD   A  LF    +     +  T+T +
Sbjct: 270 SGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHR----NATTWTIM 325

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           + A A +G    A  +F AM G+ G+ P
Sbjct: 326 MRAHAAAGRTSDALSLFRAMLGE-GVIP 352


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 251/485 (51%), Gaps = 65/485 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREM------LNSPVLRP-------------- 40
           M +RD+VSWNSMI+ Y+  G + E   LFR M      +NS                   
Sbjct: 234 MVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAA 293

Query: 41  --------------DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86
                         D VT+V  L AC +   +  G E+H   +         + NALI M
Sbjct: 294 VGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITM 353

Query: 87  YAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVI 146
           YA+C  ++ AR L                               F++++ PG+ TWN ++
Sbjct: 354 YARCKDMECARML-------------------------------FRMLECPGVVTWNTML 382

Query: 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206
           S    ++  E    + REM   GV+PN VT+ +  +L +  +NL+ G+E+HG+ VK+ + 
Sbjct: 383 SSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFK 442

Query: 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
               +  ++ID Y+K+G L  AQ VFD      +I +T++I+ Y   G  + A+ LF +M
Sbjct: 443 GYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQM 502

Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
           +++GI+PD +    VLSAC+HSGLV +  ++FN M   YGI+P +EHY+CM+ + +RA  
Sbjct: 503 IDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGL 562

Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386
           + +A E +   P  P++ +W AL+      G++E+G+     L E+  EN G+Y+++AN+
Sbjct: 563 LEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLIANM 622

Query: 387 YSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           Y+ AG WDE   VR+ M++ G+ K PG +W +   G   F+  D S   + +IY++L+ L
Sbjct: 623 YAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYVVLDEL 682

Query: 447 LGLMR 451
              MR
Sbjct: 683 SEQMR 687



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 195/406 (48%), Gaps = 41/406 (10%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           + +N +I+   + G   +  A ++EM  + VL PD  T  SVL+AC ++ ++V G  VH 
Sbjct: 139 LPYNVLISSCLRHGLPLQALAAYQEMGKNGVL-PDVFTYPSVLRACAEARELVLGRAVHM 197

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
               + +  +L+  NAL+ MYAKCG L  AR + D M  +D VS++++IS Y   G   +
Sbjct: 198 HAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAE 257

Query: 127 AMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           AM+LF+ M+  G      TWN +  G +Q   + A + L+REM   G   + VT+    +
Sbjct: 258 AMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLN 317

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S    L+ GKEIHG AV+   D+   V+ A+I  YA+   +  A+ +F   +   ++ 
Sbjct: 318 ACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVT 377

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  ++S++A    A +A S+F EM+  G++P+ VT    L+ CA          + N   
Sbjct: 378 WNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCAR---------VANLQH 428

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
           GQ                        E    + K   K    +W +L+   S SG + + 
Sbjct: 429 GQ------------------------ELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVA 464

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + V D + + +     +Y  M   Y   G+   A R+ EQM +SG+
Sbjct: 465 QNVFDTMDDCD---MISYTSMIAGYGMQGKGTVALRLFEQMIDSGI 507



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 8/151 (5%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY-AKTGFLHGAQRVFDRFKGRSLI 241
           L  H S+L+ G ++H  ++     R+  +   ++  Y +    L  A  V         +
Sbjct: 82  LHHHRSHLRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASV--AADSTLPL 139

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG--LVDKAWDIFN 299
            +  +IS+   HG   +A++ + EM  NG+ PD  T+ +VL ACA +   ++ +A  +  
Sbjct: 140 PYNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHA 199

Query: 300 A---MSGQYGIQPSVEHYACMVGVLSRARRI 327
           A   M G    Q ++       G L+ AR++
Sbjct: 200 AGAGMDGNLFFQNALMSMYAKCGDLASARKV 230


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 228/398 (57%), Gaps = 1/398 (0%)

Query: 59  VFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           + G ++H+ ++ + H+  D  +  +L+ +Y  C  +  AR++  EM+ +D V+++ +I+G
Sbjct: 95  LLGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAG 154

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           Y+  G +  A +LF  M    + +W  VI G  Q  R E  +++ R MQ  G+ P+ V +
Sbjct: 155 YVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVAL 214

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            S+ S       +  G+ +H + V+    + I +  +IID Y K G +  A  VF+  + 
Sbjct: 215 LSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEE 274

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           +S++ WT +I+ +A HG   +AV +F  M    + P+ VTF A+LSAC+H GL D     
Sbjct: 275 KSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWY 334

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
           FN M  QY I+P VEHY CMV +L RA  + EA + V  MP+K +A +WGALL  +   G
Sbjct: 335 FNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHG 394

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
           D +LG+    HL E+EP N+GNYI+++N++++  RWD+  ++R+ MKE GL  +PG S I
Sbjct: 395 DADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSI 454

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           E  G +  F ++D S     +I  +L  +   M+  G+
Sbjct: 455 EVDGMVHEFTSRDGSHPFLHKICEVLCEINTNMKSVGF 492



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 38/277 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW ++I GY+Q    EE   +FR M     + PDGV ++SVL ACG    +  
Sbjct: 171 MPERNVVSWTTVIGGYAQMRRPEEAVEVFRRM-QVEGIEPDGVALLSVLSACGDLGAVDL 229

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH FV+   ++ ++ + N++I MY KCG ++ A  + + M +K  V+++ +I+G+ +
Sbjct: 230 GEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFAL 289

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG   +A+++F+ M+R  ++                               PN VT  +I
Sbjct: 290 HGLGLQAVEMFRRMERENMA-------------------------------PNDVTFLAI 318

Query: 181 FSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQR-VFDRFKGR 238
            S  SH      G+      V   R    +     ++D   + G L  AQ  V D     
Sbjct: 319 LSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKA 378

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           +  IW A+++A   HGDA     L  E L + I+ +P
Sbjct: 379 NAAIWGALLAASRTHGDA----DLGEEALVHLIELEP 411


>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
 gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/414 (35%), Positives = 238/414 (57%), Gaps = 11/414 (2%)

Query: 40  PDGVTVVSVLQACGQ--SSDIVFGMEVHNFVIESHIKMDLWICN-----ALIGMYAKCGS 92
           P+ VT +++L  C    S     G  +H +      K+ L  CN     AL+ MYAKCG 
Sbjct: 8   PNHVTFITLLSGCADLPSQGNSLGPLLHAYTR----KLGLDTCNLMVGTALVDMYAKCGH 63

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN 152
           ++ +R   DE+  K+  S++ +I G++ +G + +A+++F  M   G+ +W  +I+G V+ 
Sbjct: 64  VELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKM 123

Query: 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212
              E  L+  R+MQ S V P+ VTI ++ S  ++   L  G  +H YA+K     N+ + 
Sbjct: 124 GLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKIC 183

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
            ++ID Y++ G +  A++VF++   R+L+ W +II   AA+G   +A+  F+ M   G +
Sbjct: 184 NSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFK 243

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           P+ V+FT  L+AC+H+GLVD+    F+ M   + I P +EHY C+V + SRA R+ +A  
Sbjct: 244 PNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMS 303

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
            V  MP+KP+  V G+LL      GDVEL + + ++L  ++P    NY++++N+Y+  GR
Sbjct: 304 VVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGR 363

Query: 393 WDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
           WD A + R  MK  G+ K PG S IE    +  FVA D S DK+E IY +LE L
Sbjct: 364 WDGACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSMLELL 417



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 141/287 (49%), Gaps = 34/287 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R ++SW  +I G+ + G +EE    FR+M  S V  PD VT+V+VL AC     +  
Sbjct: 105 MPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKV-EPDRVTIVTVLSACANLGALGL 163

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH + ++  ++ ++ ICN+LI +Y++CG+++ AR + ++M ++  VS+++II G   
Sbjct: 164 GLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAA 223

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +GF E+A++ F +M++ G    +   +G +    H  ++D        G++         
Sbjct: 224 NGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVD-------EGLK--------Y 268

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-S 239
           F +      +    E +G                I+D Y++ G L  A  V      + +
Sbjct: 269 FDIMERVHKISPRIEHYG---------------CIVDLYSRAGRLEDAMSVVQNMPMKPN 313

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEM--LNNGIQPDPVTFTAVLSA 284
            ++  ++++A    GD   A  L N +  L+ G   + V  + + +A
Sbjct: 314 EVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAA 360


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 253/483 (52%), Gaps = 36/483 (7%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD----------- 57
           +N++I G ++   +E   + F  ML   +  PD +T   VL++    S+           
Sbjct: 108 FNALIRGLAENSRFESSISFFVLMLKWKI-SPDRLTFPFVLKSAAALSNGGVGRALHCGI 166

Query: 58  IVFGMEVHNFV----IESHIKMD--------------------LWICNALIGMYAKCGSL 93
           + FG+E  +FV    ++ ++K++                    + I N LI  Y + G L
Sbjct: 167 LKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDL 226

Query: 94  DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153
             A  L D M  KD  S++++I+G+M  G + +A +LF  M    + +W  +++G  QN 
Sbjct: 227 VKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNG 286

Query: 154 RHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT 213
             E  L+    M   G RPN  TI S  S  +    L  G  IH Y   N +  N+ + T
Sbjct: 287 DPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGT 346

Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           A++D YAK G +  A++VF   K + L+IW+ +I  +A HG   KA+  F  M   G +P
Sbjct: 347 ALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKP 406

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
           D V F AVL+AC+HSG V++    F+ M   Y I+PS++HY  +V +L RA R+ EA +F
Sbjct: 407 DSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKF 466

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
           +  MP+ P   VWGAL        +VE+ +     L ++EP++ G+Y+ ++N Y+  GRW
Sbjct: 467 IRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRW 526

Query: 394 DEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
           D+A+RVR  M++ G  K PG S+IE    L  FVA D + +++ +IY  L+ +    RE+
Sbjct: 527 DDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREK 586

Query: 454 GYV 456
           GY 
Sbjct: 587 GYT 589



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 74/331 (22%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---------------------- 38
           M K+D  SWNS+I G+ + G     K LF +M    V+                      
Sbjct: 236 MPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETF 295

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                   RP+  T+VS L AC +   +  G+ +HN++  +  K++L I  AL+ MYAKC
Sbjct: 296 FCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKC 355

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G++++A  +  E  +K  + +S +I G+ +HG   KA+  F+ MK               
Sbjct: 356 GNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMK--------------- 400

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI-----HGYAVKNRY 205
                            +G +P++V   ++ +  SH   +  G +       GY +    
Sbjct: 401 ----------------FTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLI---- 440

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLIIWTAIISAYAAHGDASKAVSLFN 264
           + ++   T ++D   + G L  A +           ++W A+  A   H +   A     
Sbjct: 441 EPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASK 500

Query: 265 EMLNNGIQPD-PVTFTAVLSACAHSGLVDKA 294
           ++L   ++P  P ++  + +A A  G  D A
Sbjct: 501 KLLQ--LEPKHPGSYVFLSNAYASVGRWDDA 529



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 29/299 (9%)

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+ A+ +FQ  +      +NA+I GL +N+R E+ +     M    + P+ +T   +   
Sbjct: 90  VDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKS 149

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR----FKGRS 239
            +  SN   G+ +H   +K   + + +V  +++D Y K   L  A +VFD      K  S
Sbjct: 150 AAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGS 209

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++IW  +I  Y   GD  KA  LF+ M     + D  ++ ++++     G + +A ++F 
Sbjct: 210 VLIWNVLIHGYCRMGDLVKATELFDSM----PKKDTGSWNSLINGFMKMGDMGRAKELFV 265

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASIS 356
            M      + +V  +  MV   S+     +A E    M     +P+     + L   +  
Sbjct: 266 KMP-----EKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKI 320

Query: 357 GDVELGKFVCDHL----FEIEPENTGNYII---MANLYSQAGRWDEADRVREQMKESGL 408
           G ++ G  + ++L    F++      N +I   + ++Y++ G  + A++V  + KE GL
Sbjct: 321 GALDAGLRIHNYLSGNGFKL------NLVIGTALVDMYAKCGNIEHAEKVFHETKEKGL 373



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 161/390 (41%), Gaps = 74/390 (18%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR-- 136
           +    I   +   S+DYA ++      K+   ++A+I G   +   E ++  F +M +  
Sbjct: 76  VVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWK 135

Query: 137 --PGLSTWNAVI-------SGLVQNNRHEAVLDLVREMQASGVRPNAV-------TISSI 180
             P   T+  V+       +G V    H  +L    E   S VR + V        + S 
Sbjct: 136 ISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFD-SFVRVSLVDMYVKVEELGSA 194

Query: 181 FSLFSHF-SNLKGGKE------IHGYA-------VKNRYD----RNIYVATAIIDTYAKT 222
             +F     ++K G        IHGY            +D    ++     ++I+ + K 
Sbjct: 195 LKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKM 254

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
           G +  A+ +F +   ++++ WT +++ ++ +GD  KA+  F  ML  G +P+  T  + L
Sbjct: 255 GDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSAL 314

Query: 283 SACAHSGLVDKAWDIFNAMSGQ---------------YGIQPSVEH-------------- 313
           SACA  G +D    I N +SG                Y    ++EH              
Sbjct: 315 SACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLL 374

Query: 314 -YACMV---GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL 369
            ++ M+    +    R+  +  E++     KP + V+ A+L   S SG V  G    D++
Sbjct: 375 IWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNM 434

Query: 370 ---FEIEPENTGNYIIMANLYSQAGRWDEA 396
              + IEP +  +Y ++ ++  +AGR DEA
Sbjct: 435 RRGYLIEP-SMKHYTLVVDMLGRAGRLDEA 463



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 98/255 (38%), Gaps = 52/255 (20%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           ++IHG   +     +  V T  I + +    +  A  +F RF+ ++  ++ A+I   A +
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG------------- 289
                ++S F  ML   I PD +TF  VL + A           H G             
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVR 178

Query: 290 --LVD---------KAWDIFN-----AMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
             LVD          A  +F+       +G   I   + H  C +G L +      ATE 
Sbjct: 179 VSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVK------ATEL 232

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGR 392
              MP K +   W +L+ G    GD+   K     LF   PE N  ++  M N +SQ G 
Sbjct: 233 FDSMPKKDTGS-WNSLINGFMKMGDMGRAK----ELFVKMPEKNVVSWTTMVNGFSQNGD 287

Query: 393 WDEADRVREQMKESG 407
            ++A      M E G
Sbjct: 288 PEKALETFFCMLEEG 302


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 256/467 (54%), Gaps = 39/467 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +++ D +S+N+MI GYS+ G       +F +M     L+P  +T VS+L      S I  
Sbjct: 377 LAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCS-LKPSPLTFVSLLGVSSSQSAIEL 435

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H  +++S   +DL+  ++LI +Y+K                               
Sbjct: 436 SKQIHGLIVKSGTSLDLYAGSSLIDVYSK------------------------------- 464

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A  +F +M    +  WNA+I GL QN + E  + L  ++Q SG+ PN  T  ++
Sbjct: 465 FSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVAL 524

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            ++ S   ++  G++ H   +K   D + +V+ A+ID YAK GF+   + +F+   G+ +
Sbjct: 525 VTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDV 584

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W ++IS YA HG A +A+ +F  M   G++P+ VTF  VLSACAH+GLVD+    F+ 
Sbjct: 585 ICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDF 644

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  +Y I+P  EHYA +V +  R+ ++  A EF+ +MP++P+A VW +LL    + G+VE
Sbjct: 645 MKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVE 704

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G++  +     +P ++G  ++M+N+Y+  G W +A ++R+ M  +G+ K PG SWIE  
Sbjct: 705 IGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVM 764

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-------LLDE 460
             + +F+A+     +++ IY +L+ L  +++  GY+       LLDE
Sbjct: 765 KEVHTFIARGREHPEADVIYSLLDELTSILKNGGYLPDTSELTLLDE 811



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 208/440 (47%), Gaps = 71/440 (16%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R++VSW +MIAGY Q     E  A+F + L+    +PD     S+L +CG  + I  
Sbjct: 276 MENRNLVSWTTMIAGYMQNSCDAEAMAMFWQ-LSQEGWQPDVFACASILNSCGSLAAIWQ 334

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH   I+++++ D ++ N+LI MYAKC  L  ARA+ + +++ D +SY+A+I GY  
Sbjct: 335 GRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSR 394

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A+D+F  M+   L                               +P+ +T  S+
Sbjct: 395 LGDLAGAIDVFSKMRYCSL-------------------------------KPSPLTFVSL 423

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + S  S ++  K+IHG  VK+    ++Y  +++ID Y+K   +  A+ VF+    R +
Sbjct: 424 LGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDM 483

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           +IW A+I   A +    +AV LFN++  +G+ P+  TF A+++  +           H+ 
Sbjct: 484 VIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQ 543

Query: 290 LVDKAWD----IFNAMSGQYG---------------IQPSVEHYACMVGVLSRARRISEA 330
           ++    D    + NA+   Y                +   V  +  M+   ++  +  EA
Sbjct: 544 IIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEA 603

Query: 331 TEFVSKM----PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIM 383
             +V +M     V+P+   +  +L   + +G V+ G    D +   + IEP  T +Y  +
Sbjct: 604 L-YVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEP-GTEHYASV 661

Query: 384 ANLYSQAGRWDEADRVREQM 403
            NL+ ++G+   A    E+M
Sbjct: 662 VNLFGRSGKLHAAKEFIERM 681



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN-SPVLRPDGVTVVSVLQACGQSSDIV 59
           M  +++VSW S I+ ++Q G  E+  ALF      S    P+   + S L+AC QS  + 
Sbjct: 72  MPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVS 131

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           FG +VH   +   +  ++++  ALI +YAK G +D A  + D +  K+ V          
Sbjct: 132 FGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPV---------- 181

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                                TW AVI+G  Q  +    L+L  +M   GVRP+   ++S
Sbjct: 182 ---------------------TWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLAS 220

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
             S  S    L+GG++ HGYA +   + +  V  A+ID Y K   L  A+++FD  + R+
Sbjct: 221 AVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRN 280

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           L+ WT +I+ Y  +   ++A+++F ++   G QPD     ++L++C
Sbjct: 281 LVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSC 326



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 159/349 (45%), Gaps = 34/349 (9%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           ++ V+W ++I GYSQ G       LF +M    V RPD   + S + AC     +  G +
Sbjct: 178 KNPVTWTAVITGYSQIGQGGVALELFGKMGLDGV-RPDRFVLASAVSACSALGFLEGGRQ 236

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
            H +     ++ D  + NALI +Y KC  L  AR L D M +++ VS             
Sbjct: 237 THGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVS------------- 283

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
                             W  +I+G +QN+     + +  ++   G +P+    +SI + 
Sbjct: 284 ------------------WTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNS 325

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
               + +  G+++H +A+K   + + YV  ++ID YAK   L  A+ VF+       I +
Sbjct: 326 CGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISY 385

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            A+I  Y+  GD + A+ +F++M    ++P P+TF ++L   +    ++ +  I + +  
Sbjct: 386 NAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQI-HGLIV 444

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
           + G    +   + ++ V S+   + +A    + M  +    +W A+++G
Sbjct: 445 KSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMV-IWNAMIFG 492



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 29/217 (13%)

Query: 76  DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135
           DL++ N L+  Y+K G +  AR L D M  K+ VS+ + IS +  HG  E A+ LF   +
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195
           R                              + G  PN   ++S     +    +  G++
Sbjct: 105 RA-----------------------------SGGEAPNEFLLASALRACAQSRAVSFGQQ 135

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255
           +HG AV+   D N+YV TA+I+ YAK G +  A  VFD    ++ + WTA+I+ Y+  G 
Sbjct: 136 VHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQ 195

Query: 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
              A+ LF +M  +G++PD     + +SAC+  G ++
Sbjct: 196 GGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLE 232



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
           H  AV      ++++A  ++  Y+K G +  A+R+FDR   ++L+ W + IS +A HG  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 257 SKAVSLFN--EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
             AV+LF   +  + G  P+     + L ACA S  V     + + ++ + G+  +V   
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQV-HGVAVRIGLDGNVYVG 152

Query: 315 ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
             ++ + ++   I  A      +PVK +   W A++ G S  G
Sbjct: 153 TALINLYAKVGCIDAAMLVFDALPVK-NPVTWTAVITGYSQIG 194


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/469 (31%), Positives = 248/469 (52%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + ++D+VSW SMIAGY Q    ++  A F+EM    +  PD + + S +  C   + +  
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASAISGCAGINAMRQ 464

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+++H  +  S    D+ I NAL+ +YA+CG +  A +  +EM  KD +           
Sbjct: 465 GLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGI----------- 513

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               T N ++SG  Q+  HE  L +   M  SGV+ N  T  S 
Sbjct: 514 --------------------TGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ + +K GK+IH   +K  +     V  A+I  Y K G    A+  F     R+ 
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNE 613

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  II++ + HG   +A+ LF++M   GI+P+ VTF  VL+AC+H GLV++    F +
Sbjct: 614 VSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKS 673

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           MS +YGI+P  +HYAC++ +  RA ++  A +F+ +MP+   A VW  LL    +  ++E
Sbjct: 674 MSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIE 733

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G+F   HL E+EP ++ +Y++++N Y+   +W   D+VR+ M++ G+ K PGRSWIE  
Sbjct: 734 VGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793

Query: 421 GGLQSFVAKDTSGDKSEQIY----LILERLLGL-MREEGYVLLDEVEEE 464
             + +F   D     +EQIY    +I +R+  +  ++E Y L  + E+E
Sbjct: 794 NVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQE 842



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 163/340 (47%), Gaps = 33/340 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RD V++N++I+G++Q G  E    +F EM  S  L PD VT+ S+L AC    D+  
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQK 262

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H+++ ++ I  D  +  +L+ +Y KCG                             
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD---------------------------- 294

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              VE A+ +F    R  +  WN ++    Q N      +L  +MQA+G+RPN  T   I
Sbjct: 295 ---VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCI 351

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    +  G++IH  +VK  ++ ++YV+  +ID Y+K G+L  A+RV +  K + +
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WT++I+ Y  H     A++ F EM   GI PD +   + +S CA    + +   I +A
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI-HA 470

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
                G    V  +  +V + +R  RI EA     +M +K
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 164/335 (48%), Gaps = 39/335 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S RD VSW +M++GY+Q G  EE   L+R+M  + V+ P    + SVL +C ++     
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQ 161

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H    +     ++++ NA+I +Y +CGS   A  +  +M  +D V+++ +ISG+  
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  E A+++F+                               EMQ SG+ P+ VTISS+
Sbjct: 222 CGHGEHALEIFE-------------------------------EMQFSGLSPDCVTISSL 250

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  +   +L+ G ++H Y  K     +  +  +++D Y K G +  A  +F+     ++
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV 310

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W  ++ A+    D +K+  LF +M   GI+P+  T+  +L  C  +  +D    I ++
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HS 369

Query: 301 MSGQYGIQPSVEHYACMV------GVLSRARRISE 329
           +S + G +  +     ++      G L +ARR+ E
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE 404



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 191/438 (43%), Gaps = 71/438 (16%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           + ++V WN M+  + Q     +   LF +M  +  +RP+  T   +L+ C  + +I  G 
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQM-QAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H+  +++  + D+++   LI MY+K                               +G
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSK-------------------------------YG 394

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           ++EKA  + +++K   + +W ++I+G VQ+   +  L   +EMQ  G+ P+ + ++S  S
Sbjct: 395 WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +  + ++ G +IH     + Y  ++ +  A+++ YA+ G +  A   F+  + +  I 
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGIT 514

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF---- 298
              ++S +A  G   +A+ +F  M  +G++ +  TF + LSA A+   + +   I     
Sbjct: 515 GNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 299 -----------NAMSGQYGIQPSVEHYACMVGVLSRARRIS---------------EATE 332
                      NA+   YG   S E        +S    +S               EA +
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELG----KFVCDHLFEIEPENTGNYIIMAN 385
              +M    +KP+   +  +L   S  G VE G    K + D  + I P    +Y  + +
Sbjct: 635 LFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDE-YGIRP-RPDHYACVID 692

Query: 386 LYSQAGRWDEADRVREQM 403
           ++ +AG+ D A +  E+M
Sbjct: 693 IFGRAGQLDRAKKFIEEM 710



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 164/379 (43%), Gaps = 69/379 (18%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           E+H   +   +     + N LI +Y+K G +  AR + +E+S +D VS            
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS------------ 110

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
                              W A++SG  QN   E  L L R+M  +GV P    +SS+ S
Sbjct: 111 -------------------WVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLS 151

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             +       G+ IH    K+ +   I+V  A+I  Y + G    A+RVF     R  + 
Sbjct: 152 SCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVT 211

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD----IF 298
           +  +IS +A  G    A+ +F EM  +G+ PD VT +++L+ACA  G + K       +F
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 299 NA-MSGQYGIQPS-------------------------VEHYACMVGVLSRARRISEATE 332
            A +S  Y ++ S                         V  +  M+    +   ++++ E
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFE 331

Query: 333 FVSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYI--IMANL 386
              +M    ++P+   +  +L   + + +++LG+ +  H   ++    +  Y+  ++ ++
Sbjct: 332 LFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI--HSLSVKTGFESDMYVSGVLIDM 389

Query: 387 YSQAGRWDEADRVREQMKE 405
           YS+ G  ++A RV E +KE
Sbjct: 390 YSKYGWLEKARRVLEMLKE 408


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 250/455 (54%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+MI  Y++     E   +F EM N    +    T+ SVL ACG + D + 
Sbjct: 114 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFSEFTISSVLSACGVNCDALE 172

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
             ++H   +++ I ++L++  AL+ +YAKCG                             
Sbjct: 173 CKKLHCLSVKTCIDLNLYVGTALLDLYAKCG----------------------------- 203

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
              ++ A+ +F+ M+     TW+++++G VQN  +E  L L R  Q   +  N  T+SS+
Sbjct: 204 --MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 261

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S+ + L  GK++H    K+ +  N++VA++ +D YAK G L  +  +F   + ++L
Sbjct: 262 ICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 321

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
            +W  IIS +A H    + + LF +M  +G+ P+ VTF+++LS C H+GLV++    F  
Sbjct: 322 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 381

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P+V HY+CMV +L RA  +SEA E +  +P  P+A +WG+LL    +  ++E
Sbjct: 382 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 441

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LFE+EPEN GN+++++N+Y+   +W+E  + R+ +++  + K+ G+SWI+  
Sbjct: 442 LAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIK 501

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             + +F   ++   +  +I   L+ L+   R+ GY
Sbjct: 502 DKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGY 536



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 118/243 (48%), Gaps = 31/243 (12%)

Query: 45  VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
           V  +LQ C ++  ++     H  +I   ++ D+ + N LI  Y+KCG ++ AR + D M 
Sbjct: 56  VHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGML 115

Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
           ++  VS++ +I  Y  +    +A+D+F  M+  G       IS +               
Sbjct: 116 ERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV--------------- 160

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           + A GV  +A+                  K++H  +VK   D N+YV TA++D YAK G 
Sbjct: 161 LSACGVNCDALEC----------------KKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 204

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A +VF+  + +S + W+++++ Y  + +  +A+ L+       ++ +  T ++V+ A
Sbjct: 205 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 264

Query: 285 CAH 287
           C++
Sbjct: 265 CSN 267



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%)

Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           N   +  I  L +    +   K  HG  ++   + ++ +   +I+ Y+K GF+  A++VF
Sbjct: 52  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 111

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           D    RSL+ W  +I  Y  +   S+A+ +F EM N G +    T ++VLSAC
Sbjct: 112 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 250/469 (53%), Gaps = 50/469 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RDIVSWN+M++GY+Q GF +E + +F +M   P+   +G++                
Sbjct: 52  MPERDIVSWNAMLSGYAQNGFVDEAREIFYKM---PL--KNGIS---------------- 90

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                            W  N L+  Y + G ++ A+ L +   D   VS++ ++ G   
Sbjct: 91  -----------------W--NGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGG--- 128

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             FV K  +LF  M +    +W+A+I+G  QN   E  L    EMQ    R N  + +  
Sbjct: 129 --FVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCA 186

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  S+ + L+ G+++H   VK  Y    YV  A++  Y K G +  A+  F     + +
Sbjct: 187 LSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDV 246

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +I  YA HG   +A+++F  M   GI+PD  T  +VL+AC+H+GLVD+  + F +
Sbjct: 247 VSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYS 306

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YGI   + HY CMV +L RA ++ EA   +  MP +P A  WGALL  + I G+ E
Sbjct: 307 MNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+     +FE+EP N+G YI+++ LY+ +GRW +A ++R +M+  G+ K+PG SW+E  
Sbjct: 367 LGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQ 426

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
             + +F   DTS   +++IY  LE +   +++EGY+     +  +VEEE
Sbjct: 427 NKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEE 475



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 154/359 (42%), Gaps = 54/359 (15%)

Query: 83  LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTW 142
           +I  Y +    D AR L D+M ++D  S++ +++GY+ +  ++ A  LF+ M    + +W
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202
           NA++SG  QN      +D  RE+       N ++ + + + +     ++  K +     +
Sbjct: 61  NAMLSGYAQN----GFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRL----FE 112

Query: 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
           ++ D  +     ++      GF+   + +FD    R  I W+A+I+ Y+ +G + +A+  
Sbjct: 113 SKMDWTLVSWNCLMG-----GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 263 FNEMLNNGIQPDPVTFTAVLSACA-----------HSGLV----DKAWDIFNAMSGQYG- 306
           F EM  +  + +  +FT  LS C+           H  LV       W + NA+   Y  
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCK 227

Query: 307 --------------IQPSVEHYACMVGVLSRARRISEAT---EFVSKMPVKPSAKVWGAL 349
                         ++  V  +  M+   +R     EA    E +    ++P      ++
Sbjct: 228 CGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSV 287

Query: 350 LYGASISGDVELGKFVCDHLFEIEPE-----NTGNYIIMANLYSQAGRWDEADRVREQM 403
           L   S +G V+ G    ++ + +  +        +Y  M +L  +AG+ +EA  + + M
Sbjct: 288 LAACSHAGLVDQGS---EYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNM 343


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 253/462 (54%), Gaps = 42/462 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGG---FYEECKALFREMLNSPVLRPDGVTVVSVLQAC-GQSS 56
           M+ R+  SWN +IAGY+  G   F EE     ++M    V RPD  T+ S+L  C G   
Sbjct: 185 MTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEV-RPDAYTISSLLPLCDGDKG 243

Query: 57  DIVFGMEVHNFVIESHIKM----DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
              +G E+H +++++ + +    D+ +   LI MY++   +   R + D M         
Sbjct: 244 KWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRM--------- 294

Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVR 171
                        K  ++F         +W A+I+G V+N   +  L L R+MQ   G+ 
Sbjct: 295 -------------KCRNVF---------SWTAMINGYVENGDSDEALSLFRDMQVIDGIE 332

Query: 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
           PN V++ S+    S FS L  G++IHG+AV+   +  + +  A+ID Y+K G L  A+RV
Sbjct: 333 PNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRV 392

Query: 232 F-DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           F D    +  I W+++IS Y  HG   +A+ L+++ML  GI+PD +T   +LSAC+ SGL
Sbjct: 393 FEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGL 452

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           V++  +I++++   YGI+P++E +AC+V +L RA ++  A +F+  MPV+P   VWGAL+
Sbjct: 453 VNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALV 512

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
             + I GD+E+ +     L ++EPEN  NY+ ++NLY+ + RWD    VR  MK+  L K
Sbjct: 513 SCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRK 572

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452
           +PG SWI  +     F   D +   +  IY +L+ LL  M +
Sbjct: 573 VPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDLLLTMND 614



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 190/391 (48%), Gaps = 54/391 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +++  WNS+I GY++   Y E   LF +M +S VL PD  T+ ++ +   +   +  
Sbjct: 84  LQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVL-PDDFTLSTLSKVSSELGALFS 142

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   I      D  + N+++ MY KCG+ + +R + DEM+ ++  S++ +I+GY V
Sbjct: 143 GKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAV 202

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G                              N  E   + V++MQ   VRP+A TISS+
Sbjct: 203 SG----------------------------NCNFREETWEFVKQMQMDEVRPDAYTISSL 234

Query: 181 FSLFSHFSNLKG----GKEIHGYAVKNR----YDRNIYVATAIIDTYAKTGFLHGAQRVF 232
             L       KG    G+E+H Y VKN      D ++++   +ID Y+++  +   +RVF
Sbjct: 235 LPL---CDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVF 291

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAH-SGL 290
           DR K R++  WTA+I+ Y  +GD+ +A+SLF +M + +GI+P+ V+  +VL AC+  SGL
Sbjct: 292 DRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGL 351

Query: 291 VD----KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVW 346
           +       + +   ++ +  +  ++       G L  ARR+ E             A  W
Sbjct: 352 LSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKD------AISW 405

Query: 347 GALLYGASISGDVELGKFVCDHLFE--IEPE 375
            +++ G  + G  +    + D + +  I P+
Sbjct: 406 SSMISGYGLHGKGQEAILLYDKMLQAGIRPD 436



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 16/240 (6%)

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           +F  ++   +  WN++I+G  +N  +     L  +M +S V P+  T+S++  + S    
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L  GK IHG +++  +  +  VA +I+  Y K G    +++VFD    R+   W  +I+ 
Sbjct: 140 LFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAG 199

Query: 250 YAAHGDAS---KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA-WDIFNAMSGQ- 304
           YA  G+ +   +      +M  + ++PD  T +++L  C      DK  WD    +    
Sbjct: 200 YAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDG----DKGKWDYGRELHCYI 255

Query: 305 ------YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
                  G+   V    C++ + SR+ ++        +M  + +   W A++ G   +GD
Sbjct: 256 VKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCR-NVFSWTAMINGYVENGD 314



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 11/218 (5%)

Query: 186 HFS----NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
           HFS    +LK  ++ H   +     +N  +AT +I  YA     + ++ VFD  + +++ 
Sbjct: 31  HFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVF 90

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           +W ++I+ YA +   ++A  LFN+M ++ + PD  T + +    +  G +     I +  
Sbjct: 91  LWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSI-HGK 149

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV-- 359
           S + G          ++ +  +     E+ +   +M ++ S   W  L+ G ++SG+   
Sbjct: 150 SIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGS-WNVLIAGYAVSGNCNF 208

Query: 360 --ELGKFVCD-HLFEIEPENTGNYIIMANLYSQAGRWD 394
             E  +FV    + E+ P+      ++       G+WD
Sbjct: 209 REETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWD 246


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 250/456 (54%), Gaps = 33/456 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++D V+W++M+AG+   G   E   ++  M    V   D V +V V+QAC  + +   
Sbjct: 172 MPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAE-DEVVMVGVIQACTLTGNTRM 230

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH   +   ++MD+ I  +L+ MYAK G  D AR +   M  ++ VS          
Sbjct: 231 GASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVS---------- 280

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WNA+ISG  QN   +  LDL REM  SG++P++  + S 
Sbjct: 281 ---------------------WNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSA 319

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +    LK GK IHG+ ++ R +    + TA++D Y+K G L  A+++F++   R L
Sbjct: 320 LLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDL 378

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++W A+I+    HG    A++LF E+   GI+PD  TF ++LSA +HSGLV++    F+ 
Sbjct: 379 VLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDR 438

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++GI+P+ +H  C+V +L+R+  + EA E ++ M  +P+  +W ALL G   +  +E
Sbjct: 439 MITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLE 498

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG+ +   + E +PE+ G   +++NLY+ A +WD+   +R+ MK+SG  K+PG S IE  
Sbjct: 499 LGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVH 558

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           G   +FV +D S  + ++I  ++ +L   MR+ GYV
Sbjct: 559 GTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYV 594



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 197/437 (45%), Gaps = 69/437 (15%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S+  I +WN+++A  S+ G       +FR + +S   RPD  T    L AC +  D+   
Sbjct: 73  SRSCIPAWNALLAARSRAGSPGAALRVFRALPSSA--RPDSTTFTLALTACARLGDLDAA 130

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
             V      +    D+++C+AL+ +Y++CG++  A  + D M  KD V++S +++G++  
Sbjct: 131 EAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSA 190

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
           G   +A+ ++  M+  G++    V+ G++Q                      A T++   
Sbjct: 191 GRPVEALGMYSRMREHGVAEDEVVMVGVIQ----------------------ACTLTG-- 226

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
                  N + G  +HG  +++    ++ +AT+++D YAK G    A++VF     R+ +
Sbjct: 227 -------NTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAV 279

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD----I 297
            W A+IS +A +G A +A+ LF EM  +G+QPD     + L ACA  G +         I
Sbjct: 280 SWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFI 339

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT-------------------------- 331
              +  Q  +  +V       G L  AR++                              
Sbjct: 340 LRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALA 399

Query: 332 --EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANL 386
             + +++  +KP    + +LL   S SG VE GKF  D +   F IEP    + + + +L
Sbjct: 400 LFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEK-HCVCVVDL 458

Query: 387 YSQAGRWDEADRVREQM 403
            +++G  +EA+ +   M
Sbjct: 459 LARSGLVEEANEMLASM 475


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/497 (33%), Positives = 263/497 (52%), Gaps = 44/497 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA---CGQSSD 57
           M  R+ +SWN MI G+SQ    E    +F E +     +PD VT  SVL     CG+  D
Sbjct: 219 MPVRNRMSWNVMIKGFSQEYDCESAVKIF-EWMQREEFKPDEVTWTSVLSCHSQCGKFED 277

Query: 58  IV--------------------------------FGMEVHNFVIESHIKMDLWICNALIG 85
           ++                                   +VH +VI+   +  L   NALI 
Sbjct: 278 VLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIH 337

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK--------RP 137
           +Y K G +  A  L  ++ +K   S++++I+ ++  G +++A+ LF  ++        + 
Sbjct: 338 VYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKA 397

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197
            + TW +VI G     R +  L+  R+MQ S V  N+VTI  I S+ +    L  G+EIH
Sbjct: 398 NVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPALNLGREIH 457

Query: 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257
           G+ ++     NI V  A+++ YAK G L     VF+  + + LI W +II  Y  HG A 
Sbjct: 458 GHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAE 517

Query: 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
           KA+S+F+ M+++G  PD +   AVLSAC+H+GLV+K  +IF +MS ++G++P  EHYAC+
Sbjct: 518 KALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACI 577

Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377
           V +L R   + EA+E V  MP++P   V GALL    +  +V++ + +   L  +EPE T
Sbjct: 578 VDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERT 637

Query: 378 GNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSE 437
           G+Y++++N+YS  GRW+E+  VR   K+  L K+ G SWIE       F +      + E
Sbjct: 638 GSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKYKFSSGSIVQSEFE 697

Query: 438 QIYLILERLLGLMREEG 454
            IY +LE L+  M ++G
Sbjct: 698 TIYPVLEDLVSHMLKKG 714



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 150/305 (49%), Gaps = 9/305 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+  WNS++      G YE    L+R M     L  DG  +  +L+AC            
Sbjct: 122 DLRLWNSILKANVSHGLYENALELYRGMRQRG-LTGDGYILPLILRACRYLGRFGLCRAF 180

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  VI+  +K +L + N L+ +Y K G +  A  L  EM  ++ +S++ +I G+      
Sbjct: 181 HTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDC 240

Query: 125 EKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           E A+ +F+ M+R    P   TW +V+S   Q  + E VL     M+ SG   +   ++  
Sbjct: 241 ESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVF 300

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           FS+ +    L   +++HGY +K  ++  +    A+I  Y K G +  A+ +F + + + +
Sbjct: 301 FSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGI 360

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEM--LNN--GIQPDPVTFTAVLSACAHSGLVDKAWD 296
             W ++I+++   G   +A+SLF+E+  +N+   ++ + VT+T+V+  C   G  D + +
Sbjct: 361 ESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLE 420

Query: 297 IFNAM 301
            F  M
Sbjct: 421 YFRQM 425



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 134/318 (42%), Gaps = 12/318 (3%)

Query: 95  YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS---TWNAVISGLVQ 151
           +A+ LL +   +     + +IS Y   G +  A ++F+ +    LS    WN+++   V 
Sbjct: 76  HAQVLLSDFIFRSGSLAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVS 135

Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
           +  +E  L+L R M+  G+  +   +  I     +       +  H   ++     N++V
Sbjct: 136 HGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHV 195

Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
              ++  Y K G +  A  +F     R+ + W  +I  ++   D   AV +F  M     
Sbjct: 196 VNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEF 255

Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
           +PD VT+T+VLS  +  G  +     F+ M    G   S E  A    V +    +S A 
Sbjct: 256 KPDEVTWTSVLSCHSQCGKFEDVLKYFHLMR-MSGNAVSGEALAVFFSVCAELEALSIAE 314

Query: 332 E---FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLF-EIEPENTGNYIIMANLY 387
           +   +V K   +       AL++     G V+      +HLF +I  +   ++  +   +
Sbjct: 315 KVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDA----EHLFRQIRNKGIESWNSLITSF 370

Query: 388 SQAGRWDEADRVREQMKE 405
             AG+ DEA  +  +++E
Sbjct: 371 VDAGKLDEALSLFSELEE 388


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 258/465 (55%), Gaps = 11/465 (2%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           V+W S+++ +++ G  EE   LF +M    V  P    +  VL  C   + +  G  +H 
Sbjct: 241 VTWTSLLSSHARCGHLEETMVLFCKMRMKGV-GPTAEMLAVVLSVCADLATLNSGQMIHG 299

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           ++++      L+  NALI +Y K G +  A  L  EM  K+ VS++A+IS +   G  +K
Sbjct: 300 YMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDK 359

Query: 127 AMDLFQVMKR--------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
           A++L   +++        P + TW+A+I G       E  L++ R+MQ + V+ N+VTI+
Sbjct: 360 ALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIA 419

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S+ +  + L  G+E+HG+ ++ R D N+ V   +I+ Y K G       VF++ + R
Sbjct: 420 SVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENR 479

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
             I W ++I+ Y  HG    A++ FN M+ +G +PD VTF A LSAC+H+GLV +   +F
Sbjct: 480 DSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLF 539

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + M   + I+P +EHYACMV +L RA  + EA+  +  MP++P+A +W +LL    +  D
Sbjct: 540 SQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKD 599

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
            +L +     +  +  + TG++++++N+++ + RW+++ RVR   +  GL K+PG SWIE
Sbjct: 600 TDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIE 659

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
               +  F A  T  +  E++  IL  L    + E Y + D + E
Sbjct: 660 VKKKVYMFKAGYTISEGLEKVDEILHDL--AFQIENYEIDDPIIE 702



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 157/305 (51%), Gaps = 9/305 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           + + WNS+I      G+  E   L+ +M N  VL  DG T   +L+A            +
Sbjct: 103 NFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVL-GDGFTFPLLLRASSNLGAFNMCKNL 161

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H  V++   +  L + N LIGMYAK   +D AR + D+M  K  VS++ ++SGY  +  V
Sbjct: 162 HCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDV 221

Query: 125 EKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
             A  +F  M+     P   TW +++S   +    E  + L  +M+  GV P A  ++ +
Sbjct: 222 NGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVV 281

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S+ +  + L  G+ IHGY VK  ++  ++   A+I  Y K G +  A+++F   K ++L
Sbjct: 282 LSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNL 341

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLN----NGIQPDPVTFTAVLSACAHSGLVDKAWD 296
           + W A+IS++A  G   KA+ L +++        ++P+ +T++A++   A  GL +++ +
Sbjct: 342 VSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLE 401

Query: 297 IFNAM 301
           +F  M
Sbjct: 402 VFRKM 406



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 152/336 (45%), Gaps = 44/336 (13%)

Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGV 170
           ++S Y  +G V  A  +F        S    WN++I   V +      L L  +M+  GV
Sbjct: 76  LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGV 135

Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
             +  T   +    S+       K +H + V+  +  +++V   +I  YAK   +  A++
Sbjct: 136 LGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARK 195

Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290
           VFD+ + +S++ W  ++S YA + D + A  +F++M   G++P+PVT+T++LS+ A  G 
Sbjct: 196 VFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGH 255

Query: 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
           +++   +F  M  + G+ P+ E  A ++ V +    ++                  G ++
Sbjct: 256 LEETMVLFCKMRMK-GVGPTAEMLAVVLSVCADLATLNS-----------------GQMI 297

Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
           +G  + G         D+LF        N +I   LY + G   +A+++  +MK   L  
Sbjct: 298 HGYMVKGGFN------DYLF------AKNALI--TLYGKGGGVGDAEKLFHEMKVKNLV- 342

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
               SW      L S  A+    DK+ ++   LE++
Sbjct: 343 ----SW----NALISSFAESGVYDKALELLSQLEKM 370



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 79/303 (26%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFY-------------------------------------- 22
           M  +++VSWN++I+ +++ G Y                                      
Sbjct: 336 MKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGL 395

Query: 23  -EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81
            EE   +FR+M  + V + + VT+ SVL  C   + +  G E+H  VI + +  ++ + N
Sbjct: 396 GEESLEVFRKMQLANV-KANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGN 454

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
            LI MY KCGS      + +++ ++D +S++++I+GY  HG           + +  L+T
Sbjct: 455 GLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHG-----------LGKDALAT 503

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           +N +I                     SG RP+ VT  +  S  SH   +  G  +     
Sbjct: 504 FNHMIK--------------------SGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMR 543

Query: 202 KN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----IIWTAIISAYAAHGDA 256
           +N + +  I     ++D   + G +  A  +    KG  +     IW++++++   H D 
Sbjct: 544 QNFKIEPEIEHYACMVDLLGRAGLVEEASNI---IKGMPMEPNAYIWSSLLNSCRMHKDT 600

Query: 257 SKA 259
             A
Sbjct: 601 DLA 603



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 110/231 (47%), Gaps = 8/231 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRS- 239
           L    + ++  K++H   V      + +V+  ++  Y++ G +  A++VF    F+  S 
Sbjct: 44  LLRQCNGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSN 103

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
            ++W +II A   HG   +A+ L+ +M N G+  D  TF  +L A ++ G  +   ++ +
Sbjct: 104 FLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNL-H 162

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
               Q+G Q  +     ++G+ ++  R+ +A +   KM +K S   W  ++ G + + DV
Sbjct: 163 CHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIK-SVVSWNTMVSGYAYNYDV 221

Query: 360 ELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             G     H  E+E    N   +  + + +++ G  +E   +  +M+  G+
Sbjct: 222 N-GASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGV 271


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 250/471 (53%), Gaps = 40/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M KR+IVSW +MI G++  GFYE+   LF EM     + P+  T +S+  AC        
Sbjct: 191 MPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRL 250

Query: 61  GMEVHNFVIESHIKMD-----------------------------------LWICNALIG 85
           G ++H  +I   +  D                                   +  CN +I 
Sbjct: 251 GKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMIN 310

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
            Y + G LD A+ L D M  +D+++++++I GY+V G V +A  LF  M       W  +
Sbjct: 311 GYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTM 370

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           ISG V+N        L  EM   GVRP + T + +F      ++L  G+++H    K   
Sbjct: 371 ISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLS 430

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
           D ++ +  ++I  YAK G +  A R+F +     LI W ++I  ++ HG A++A+ +F  
Sbjct: 431 DNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEA 490

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M+++G  P+ VTF  VLSAC+H+GL+++ W+IFNAMS  + +QP +EHY CMV +L RA 
Sbjct: 491 MVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICMVNLLGRAG 550

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASIS-GDVELGKFVCDHLFEIEPENTGNYIIMA 384
           ++ EA E +  +P++ +  +WGALL   S S  + ++ K     + E++P N   ++++ 
Sbjct: 551 KLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLNAPAHVLLC 610

Query: 385 NLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDK 435
           N+Y+ +G+  E  ++R++M   G+ K+PG SWI  +G +  F+    SGDK
Sbjct: 611 NIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFL----SGDK 657



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 166/356 (46%), Gaps = 52/356 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++VSW SM+ G +  G   E K+LF EM +  V+  + + V  +     +++ +VF
Sbjct: 67  MPERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVF 126

Query: 61  GMEVHNFVIESHIKMDL-WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
                    ES +K    W  N +I  YA+ G ++ ARAL DEM D++ +++++++SGY 
Sbjct: 127 D--------ESPVKNAASW--NGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYC 176

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTIS 178
             G VE+   LF+ M +  + +W A+I G   N  +E  L L  EM+  + + PN  T  
Sbjct: 177 RAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFI 236

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDR------------------------------- 207
           S+    +     + GK++H   +    D                                
Sbjct: 237 SLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKN 296

Query: 208 -NIYVATA---IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
            N YV  +   +I+ Y + G L  AQ +FD    R  I WT++I  Y   G+ S+A SLF
Sbjct: 297 SNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLF 356

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
             M     + D V +T ++S    + L  +A  +F+ M  Q G++P    YA + G
Sbjct: 357 LYM----PEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQ-GVRPLSSTYAILFG 407



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 25/264 (9%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
            +L+  Y++ G +D ARAL D M +++ VSY+A++SG +  G + +AM LF+ M    + 
Sbjct: 14  TSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVV 73

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +W +++ GL    +      L  EM       N V+ +++        +L+  + +   +
Sbjct: 74  SWTSMLCGLADAGKICEAKSLFEEMPDR----NVVSWNAMIVGLIRNGDLEAARMVFDES 129

Query: 201 -VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
            VKN    N      +I  YA+ G +  A+ +FD  + R++I WT+++S Y   G+  + 
Sbjct: 130 PVKNAASWN-----GMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEG 184

Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH-----Y 314
             LF  M    I    V++TA++     +G  + A  +F  M     I P++E      Y
Sbjct: 185 YHLFRTMPKRNI----VSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAY 240

Query: 315 ACM------VGVLSRARRISEATE 332
           AC       +G    AR I+E  +
Sbjct: 241 ACAGLGFHRLGKQLHARLITEGLD 264



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 21/259 (8%)

Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168
           V +++++S Y   GFV++A  LF +M      ++NA++SGL+Q  R    + L  EM   
Sbjct: 11  VYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMP-- 68

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
               N V+ +S+    +    +   K +     +   DRN+    A+I    + G L  A
Sbjct: 69  --ERNVVSWTSMLCGLADAGKICEAKSL----FEEMPDRNVVSWNAMIVGLIRNGDLEAA 122

Query: 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
           + VFD    ++   W  +I+ YA +G   +A +LF+EM +  +    +T+T+++S    +
Sbjct: 123 RMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMEDRNV----ITWTSMVSGYCRA 178

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP----VKPSAK 344
           G V++ + +F  M      + ++  +  M+G  +      +A     +M     + P+ +
Sbjct: 179 GEVEEGYHLFRTMP-----KRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIE 233

Query: 345 VWGALLYGASISGDVELGK 363
            + +L Y  +  G   LGK
Sbjct: 234 TFISLAYACAGLGFHRLGK 252


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDG------VTVVSVLQACGQSSDIVFGME 63
           N+MI  Y+Q   + +  A++  ML  P   PDG       T   +L+ACG ++ +  G +
Sbjct: 81  NAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQ 140

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V+ S       + N+LI MY + G L  A  + DEM ++D VS++ +IS +   G 
Sbjct: 141 VHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQ 200

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + KA  LF  M    + TW A++SG      +   +D  R MQ  G  P+ V+I ++   
Sbjct: 201 MRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPA 260

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ G+ I+ Y  ++    + ++  A+++ YAK G +  A ++FD    + +I W
Sbjct: 261 CAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISW 320

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           + +I   AAHG A +AV LF EM   G ++P+ +TF  +LSAC+++GLVD+    F+ M+
Sbjct: 321 STVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMN 380

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             YG++P VEHY C+V +L R+ +I  A + V  MPV   AKVWG+LL      GDV+  
Sbjct: 381 DVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTA 440

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
               + L E+EP++ GN +++AN+Y+ A RW +    R+ ++   + K PG S IE    
Sbjct: 441 VLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNV 500

Query: 423 LQSFVA 428
           ++ FVA
Sbjct: 501 VREFVA 506



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 72/312 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---------------------- 38
           M +RD+VSWN +I+ +++ G   +  ALF  M +  ++                      
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                    PD V++V+VL AC Q   +  G  ++ +     +     ICNAL+ MYAKC
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G +D A  L D M+DKD +S+S +I G   HG   +A+ LF  M++ G            
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEG------------ 347

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRN 208
                              VRPN +T   + S  S+   +  G   H   + + Y  +  
Sbjct: 348 ------------------KVRPNVITFVGLLSACSYAGLVDEGLS-HFDRMNDVYGVEPG 388

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI----IWTAIISAYAAHGDASKAVSLFN 264
           +     ++D   ++G +   +R  D  +   +     +W +++SA  +HGD   AV    
Sbjct: 389 VEHYGCVVDLLGRSGQI---RRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445

Query: 265 EMLNNGIQPDPV 276
            ++   ++PD V
Sbjct: 446 RLVE--LEPDDV 455



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 149/346 (43%), Gaps = 65/346 (18%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNA----- 174
           H  V  A  +F  ++ P L   NA+I    QN++H +AV   +R ++     P+      
Sbjct: 59  HRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGD 118

Query: 175 -VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +       + L+ GK++H + V++  D +  V  ++I+ Y + G L  A +VFD
Sbjct: 119 RFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFD 178

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             + R ++ W  +ISA+A  G   KA +LFN M +  I    VT+TA++S     G    
Sbjct: 179 EMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTI----VTWTAMVSGYTTVGDYPG 234

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           A D F +M  + G +P                      + VS + V P+    GAL    
Sbjct: 235 AVDAFRSMQTE-GFEP----------------------DDVSIVAVLPACAQLGAL---- 267

Query: 354 SISGDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
                 ELG+++   C     +   +  N ++   +Y++ G  D+A ++ + M +  +  
Sbjct: 268 ------ELGRWIYAYCKRHGMLTSTHICNALM--EMYAKCGCIDQALQLFDGMADKDVI- 318

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               SW    GGL +       G   E ++L  E     M +EG V
Sbjct: 319 ----SWSTVIGGLAAH------GRAHEAVWLFTE-----MEKEGKV 349



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
            +HG+ V+ R  ++ Y+AT I+        +  A RVF + +  +L +  A+I AYA + 
Sbjct: 32  RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91

Query: 255 DASKAVSLFNEMLNNGIQP-------DPVTFTAVLSAC 285
               AV+++  ML     P       D  T+  +L AC
Sbjct: 92  QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKAC 129


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 252/471 (53%), Gaps = 55/471 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+W+S+I+GY+Q GF  E   +FR+M      RP+ VT++S+L AC     ++ G E 
Sbjct: 331 DVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRC-RPNVVTLMSLLSACASVGALLHGKET 389

Query: 65  HNFVIESHIKM-------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           H + ++  +K        DL + NALI MYAKC SL+ ARA+ DE+  KD          
Sbjct: 390 HCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDR--------- 440

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA--SGVRPNAV 175
                                + TW  +I G  Q+      L L  EM    + + PN  
Sbjct: 441 --------------------DVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDF 480

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNI-YVATAIIDTYAKTGFLHGAQRVFD 233
           TIS +    +  + LK GK+IH Y ++ +R D ++ +VA  +ID Y+K+G +  AQ VFD
Sbjct: 481 TISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFD 540

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               R+ + WT++++ Y  HG +  A  +F+EM    +  D +TF  VL AC+HSG+   
Sbjct: 541 SMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM--- 597

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
                      +G+ P VEHYACMV +L RA R+ EA   ++ MP++P+  VW ALL   
Sbjct: 598 ----------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSAC 647

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            I  + EL +F    L E++ +N G Y +++N+Y+ A RW +  R+   MK +G+ KIPG
Sbjct: 648 RIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPG 707

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
            SW++   G+++F   D +  +S++IY  L  L+  ++   + L D  +EE
Sbjct: 708 WSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAN-FSLHDVDDEE 757



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/440 (32%), Positives = 215/440 (48%), Gaps = 43/440 (9%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D V+WNS+++ YS         +LFREM     + PD V VV++L  CG     + G +V
Sbjct: 194 DSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQV 253

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H F + S +  D+++ NAL+ MYAKCG ++ A  + + M  KD V+++A+++GY  +G  
Sbjct: 254 HGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRF 313

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           E A+ LF  M+   +     TW++VISG  Q       +D+ R+M     RPN VT+ S+
Sbjct: 314 EDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSL 373

Query: 181 FSLFSHFSNLKGGKEIHGYAVK-------NRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
            S  +    L  GKE H Y+VK       N    ++ V  A+ID YAK   L  A+ +FD
Sbjct: 374 LSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFD 433

Query: 234 RF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEM--LNNGIQPDPVTFTAVLSACAHSG 289
               K R ++ WT +I  YA HGDA+ A+ LF+EM  ++N I P+  T + VL ACA   
Sbjct: 434 EICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLA 493

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348
            +     I   +  +  I   V   A C++ + S++  +  A      M  K +A  W +
Sbjct: 494 ALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTS 552

Query: 349 LLYGASISGDVE----------------------LGKFVCDHL---FEIEPENTGNYIIM 383
           LL G  + G  E                      +  + C H    F ++P    +Y  M
Sbjct: 553 LLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMDFGVDP-GVEHYACM 611

Query: 384 ANLYSQAGRWDEADRVREQM 403
            +L  +AGR  EA R+   M
Sbjct: 612 VDLLGRAGRLGEAMRLINDM 631



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 148/299 (49%), Gaps = 36/299 (12%)

Query: 9   WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
           WN +I              LFR M  +    PD  T   V +ACG+ S+   G  +H  V
Sbjct: 94  WNQLIRHALHFNSPNTALRLFRRM-KTLHWTPDHYTFPFVFKACGEISNFELGASIHGCV 152

Query: 69  IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVE 125
           I    + ++++CNA+I MY KC ++ +AR + DE+  +   D V++++I+S Y  H FV 
Sbjct: 153 IRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYS-HCFVP 211

Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLF 184
                            N  +S             L REM    G+ P+ V + +I  + 
Sbjct: 212 -----------------NVAVS-------------LFREMTVGYGILPDTVGVVNILPVC 241

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
            +      G+++HG+ V++    +++V  A++D YAK G +  A +VF+R + + ++ W 
Sbjct: 242 GYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWN 301

Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           A+++ Y+ +G    A+SLF +M    I+ D VT+++V+S  A  G   +A D+F  M G
Sbjct: 302 AMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCG 360



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 9/256 (3%)

Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQAS 168
           + +I  Y+    +  A+ L +    P  S+   WN +I   +  N     L L R M+  
Sbjct: 61  TNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTL 120

Query: 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
              P+  T   +F      SN + G  IHG  ++  ++ N++V  A+I  Y K   +  A
Sbjct: 121 HWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHA 180

Query: 229 QRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSA 284
           ++VFD    R +   + W +I+S Y+     + AVSLF EM +  GI PD V    +L  
Sbjct: 181 RKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPV 240

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           C + GL      + +    + G+   V     +V + ++  ++ +A +   +M  K    
Sbjct: 241 CGYLGLGLCGRQV-HGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK-DVV 298

Query: 345 VWGALLYGASISGDVE 360
            W A++ G S +G  E
Sbjct: 299 TWNAMVTGYSQNGRFE 314


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 239/459 (52%), Gaps = 38/459 (8%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+V WN+M+ GY+Q G +E     FR M +  V+ P   TV  VL       D+  G  
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVV-PSRFTVTGVLSVFAVMGDLNNGRI 258

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           +H F ++      + + N+LI MY KC                                 
Sbjct: 259 IHGFAMKMGYDSGVAVSNSLIDMYGKCKC------------------------------- 287

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +E A+++F++M+   + +WN+++S   Q   H+  L L+  M  +G++P+ VT++++   
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRN------IYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
            SH + L  G+EIHGY + +   ++      + +  A+ID YAK G +  A  VF+R   
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSN 407

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + +  W  +I  Y  HG  ++A+ +F+ M    ++PD VTF  VLSAC+H+G V +  + 
Sbjct: 408 KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF 467

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
              M  +Y + P++EHY C++ +L RA ++ EA E    MP++ +  VW ALL    +  
Sbjct: 468 LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHK 527

Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
              L +     +FE+EPE+ G+Y++M+N+Y   GR++E   VR  M++  + K PG SWI
Sbjct: 528 HAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWI 587

Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
           E   G+  FV+ D +  ++  IY  L  L   +RE GYV
Sbjct: 588 ELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREHGYV 626



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 42/268 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++DI SWNS+++ + Q G ++    L   ML + + +PD VTV +VL AC   + ++ 
Sbjct: 298 MREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGI-QPDLVTVTTVLPACSHLAALMH 356

Query: 61  GMEVHNFVIESHIKM------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G E+H ++I S +        D+ + NA+I MYAKCGS+  A  + + MS+KD  S++ +
Sbjct: 357 GREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIM 416

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
           I GY +HG+  +A+++F  M                             E+Q   ++P+ 
Sbjct: 417 IMGYGMHGYGNEALEMFSRMC----------------------------EVQ---LKPDE 445

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVF 232
           VT   + S  SH   +  G+      +K++YD    I   T +ID   + G L  A  + 
Sbjct: 446 VTFVGVLSACSHAGFVSQGRNFL-VQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELA 504

Query: 233 DRFKGRS-LIIWTAIISAYAAHGDASKA 259
                 +  ++W A+++A   H  A  A
Sbjct: 505 LTMPIEANPVVWRALLAACRLHKHAVLA 532



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 132/296 (44%), Gaps = 38/296 (12%)

Query: 44  TVVSVLQACGQSSDIVFGMEVHNF-VIESHIKMDLWICNALIGMYAKCGSLDYARALL-D 101
           T ++ LQA     ++  G E+H++ +I   +   L I  +LI MY+KC  +++A ++  D
Sbjct: 39  TCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSD 97

Query: 102 EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
              + +  +++AIISG++ +GF E+  + +Q M+  G+          ++     A LD+
Sbjct: 98  PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK-----ACLDV 152

Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
           +                               K+IHG   K   + ++++ +A+++ Y K
Sbjct: 153 LEI-----------------------------KKIHGLLFKFGLELDVFIGSALVNCYLK 183

Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
            G +  AQ  F+    R +++W A+++ YA  G     +  F  M +  + P   T T V
Sbjct: 184 FGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGV 243

Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337
           LS  A  G ++    I +  + + G    V     ++ +  + + I +A E    M
Sbjct: 244 LSVFAVMGDLNNG-RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 298



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF-DRFKGRSLIIW 243
           +H  NL  GKEIH Y + N +  +    T++I+ Y+K   ++ A  +F D     ++  +
Sbjct: 48  AHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAF 107

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            AIIS +  +G   +    + +M N G+ PD  TF   + AC     + K     + +  
Sbjct: 108 NAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKK----IHGLLF 163

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
           ++G++  V   + +V    +   +  A     ++P++    +W A++ G +  G  E+
Sbjct: 164 KFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEM 220


>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
 gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 232/384 (60%), Gaps = 9/384 (2%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVHGFVEKAMDLFQVMKR 136
           N+LI  Y+  G  D+A+ LL+ M ++    D ++++++++GY + G  ++A+ L   +K 
Sbjct: 27  NSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLITWNSLVAGYSMRGHTKEALALIHDIKI 86

Query: 137 PGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
            GL+    +W A+ISG  QN  +   ++   +MQ  G++PN+ TISS+       S L+ 
Sbjct: 87  SGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGGLSLLQK 146

Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
           GKEIH  +++  +  ++YVATA+IDTY+K+G L  A +VF   + ++L  W  +I  +A 
Sbjct: 147 GKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLESAHKVFWSAE-KTLASWNCMIMGFAI 205

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE 312
           +G   + ++L + M   GI PD +TFTA+LS C +SGLV++ W  F+ MS  YGI+P++E
Sbjct: 206 NGCGREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSNDYGIKPTIE 265

Query: 313 HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372
           HY+CM  +L RA  + EA +F+  MP+KP A VWGA+L    I G++E  +     LF++
Sbjct: 266 HYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRIHGNIEFAEIAAKELFKL 325

Query: 373 EPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTS 432
           EP N+ NY++M +LY+ + RW++ DR+++ M   G+      SWI+    +  F A    
Sbjct: 326 EPYNSANYVLMLSLYAMSNRWEDVDRIKDLMDTRGIKPRQVWSWIQIDQRVHLFSAGGIP 385

Query: 433 GDKSEQIYLILERLLGLMREEGYV 456
                +IY  L +L+  +++ GY+
Sbjct: 386 HQDEGEIYYELYQLVSELKKFGYL 409



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 6/148 (4%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           ++VSW ++I+G SQ G Y E    F +M    + +P+  T+ S+L+ CG  S +  G E+
Sbjct: 92  NVVSWTALISGCSQNGNYSESIEAFVQMQEEGI-KPNSATISSLLRTCGGLSLLQKGKEI 150

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
           H   I      DL++  ALI  Y+K G L+ A  +    ++K   S++ +I G+ ++G  
Sbjct: 151 HCLSIRKSFIEDLYVATALIDTYSKSGDLESAHKVF-WSAEKTLASWNCMIMGFAINGCG 209

Query: 125 EKAMDLFQVMKRPGLS----TWNAVISG 148
            + + L   M+R G+     T+ A++SG
Sbjct: 210 REVIALLDGMQRAGILPDAITFTALLSG 237



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 219 YAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
           Y K   L  +Q +FD  K ++++ W ++IS Y+  G    A  L N M   GI+PD +T+
Sbjct: 2   YVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLITW 61

Query: 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338
            ++++  +  G   +A  + + +    G+ P+V  +  ++   S+    SE+ E   +M 
Sbjct: 62  NSLVAGYSMRGHTKEALALIHDIKIS-GLTPNVVSWTALISGCSQNGNYSESIEAFVQMQ 120

Query: 339 ---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL---YSQAGR 392
              +KP++    +LL        ++ GK +  H   I      +  +   L   YS++G 
Sbjct: 121 EEGIKPNSATISSLLRTCGGLSLLQKGKEI--HCLSIRKSFIEDLYVATALIDTYSKSGD 178

Query: 393 WDEADRV 399
            + A +V
Sbjct: 179 LESAHKV 185


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 240/453 (52%), Gaps = 13/453 (2%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           +I  WNSM  GY+Q   Y E   +F EM    V     V   S++     S+D+V    +
Sbjct: 15  NIALWNSMFRGYAQSESYRE---IFCEMFERNV-----VAWTSMINGYILSADLVSARRL 66

Query: 65  HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
            +   E  +   LW  N ++  Y + G +  AR L  EM ++D + ++ ++ GY  +G V
Sbjct: 67  FDLAPERDVV--LW--NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNV 122

Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL-DLVREMQASGVRPNAVTISSIFSL 183
           E    LF+ M    + +WNA+I G   N     VL    R +  S V PN  T+ ++ S 
Sbjct: 123 EALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSA 182

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L  GK +H YA  +    N+YV  A++D YAK G +  A  VF     + LI W
Sbjct: 183 CARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISW 242

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
             +I   A H   + A++LF +M N G +PD +TF  +L AC H GLV+  +  F +M+ 
Sbjct: 243 NTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMAD 302

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
            Y I P +EHY CMV +L+RA R+ +A  FV KMPV+    +W  LL    I  +VEL +
Sbjct: 303 DYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAE 362

Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
                L E+EP+N  NY++++N+Y  AGRW++  R++  M+++G  K+PG S IE +  +
Sbjct: 363 LALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 422

Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
             F + D    + E+IY +L  L+ ++R  GY+
Sbjct: 423 VEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYI 455



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 81/138 (58%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+I SWN++I GY+  G + E    F+ ML+   + P+  T+V+VL AC +   +  
Sbjct: 132 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 191

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH +   S +K ++++ NAL+ MYAKCG ++ A ++   M  KD +S++ +I G  +
Sbjct: 192 GKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAM 251

Query: 121 HGFVEKAMDLFQVMKRPG 138
           H     A++LF  MK  G
Sbjct: 252 HSRGADALNLFFQMKNAG 269


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 242/450 (53%), Gaps = 34/450 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R   SWNSMIA Y+ GG + E   LF  ML+    RP+ +T+ SV   C +S D+  
Sbjct: 211 MERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGA-RPNAITITSVFSICAKSGDLDT 269

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  V + + E  ++ ++ +  AL+ MY KC ++D AR   D MS +D V+          
Sbjct: 270 GKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVA---------- 318

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W+ +I+G  QN R    L+L   M+A+  RPN VT+  +
Sbjct: 319 ---------------------WSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGV 357

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  +   + +  ++I  YA   R     Y+ +A+ID Y + G +  A+ VF R + + +
Sbjct: 358 ISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGV 417

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W ++I   A +G A  A+SL+ +M  NG+QP+ +TF A+L+AC H+GLVD+    F  
Sbjct: 418 ITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEE 477

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M  ++ + P VEH AC+V +L ++  + EA +F+  M V+P+A +W  LL       DVE
Sbjct: 478 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVE 537

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L K     L  +EP+N+  Y++++N+Y+ AG W +A  +R+ M+   + K+   SWI+  
Sbjct: 538 LAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLD 597

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLM 450
           G +  F+ +DT   +S +IY ++   LGL+
Sbjct: 598 GEVHKFLVQDTYHPRSAEIYDVIHG-LGLL 626



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 194/402 (48%), Gaps = 9/402 (2%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
           ++ ++  S+   + +    F  M       P G  V  V ++C  ++    G +VH   +
Sbjct: 88  STFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGC-VPLVFKSCALTASSCQGRQVHCHAL 146

Query: 70  ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
              +  D+++  AL+  YAK G ++ A ++ DEM  KD +  + +I+GY   G V+KA  
Sbjct: 147 VRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARR 206

Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
           LF  M+R   ++WN++I+           L L   M + G RPNA+TI+S+FS+ +   +
Sbjct: 207 LFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGD 266

Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
           L  GK +     ++   +N+ V TA+++ Y K   +  A+R FDR   R ++ W+ +I+ 
Sbjct: 267 LDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAG 325

Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
           YA +G   +++ LF  M     +P+ VT   V+SACA  G  +    I N    Q    P
Sbjct: 326 YAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQR--LP 383

Query: 310 SVEHY-ACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
              +  + ++ + +R   +  A    S+M  K     W +++ G +++G  E    + + 
Sbjct: 384 LTSYLGSALIDMYTRCGHVGRARSVFSRMEQK-GVITWNSMIRGLAMNGFAEDAISLYEK 442

Query: 369 LFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           + E  ++P N   ++ +    + AG  D+     E+MK   L
Sbjct: 443 MAENGVQP-NEITFVALLAACTHAGLVDQGMAFFEEMKREHL 483



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 119/262 (45%), Gaps = 34/262 (12%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A +LF  + RP  +  +  +S L + + H  +L     M   G    +  +  +F   + 
Sbjct: 72  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG------------------- 227
            ++   G+++H +A+      +++V TA++D YAK G +                     
Sbjct: 132 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCL 191

Query: 228 ------------AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
                       A+R+FD  + R+   W ++I+ YA  G+  +A++LF+ ML+ G +P+ 
Sbjct: 192 ITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNA 251

Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
           +T T+V S CA SG +D    + + + G+  +Q  + H A M  +  + R I +A     
Sbjct: 252 ITITSVFSICAKSGDLDTGKRVRD-LIGEDDLQNVIVHTALM-EMYVKCRAIDDARREFD 309

Query: 336 KMPVKPSAKVWGALLYGASISG 357
           +M  +     W  ++ G + +G
Sbjct: 310 RMSQR-DVVAWSTMIAGYAQNG 330


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 10  NSMIAGYSQGGFYEECKALFREMLNSPVLRPDG------VTVVSVLQACGQSSDIVFGME 63
           N+MI  Y+Q   + +  A++  ML  P   PDG       T   +L+ACG ++ +  G +
Sbjct: 81  NAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQ 140

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V+ S       + N+LI MY + G L  A  + DEM ++D VS++ +IS +   G 
Sbjct: 141 VHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQ 200

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           + KA  LF  M    + TW A++SG      +   +D  R MQ  G  P+ V+I ++   
Sbjct: 201 MRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPA 260

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +    L+ G+ I+ Y  ++    + ++  A+++ YAK G +  A ++FD    + +I W
Sbjct: 261 CAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISW 320

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           + +I   AAHG A +AV LF EM   G ++P+ +TF  +LSAC+++GLVD+    F+ M+
Sbjct: 321 STVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMN 380

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
             YG++P VEHY C+V +L R+ +I  A + V  MPV   AKVWG+LL      GDV+  
Sbjct: 381 DVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTA 440

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
               + L E+EP++ GN +++AN+Y+ A RW +    R+ ++   + K PG S IE    
Sbjct: 441 VLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNV 500

Query: 423 LQSFVA 428
           ++ FVA
Sbjct: 501 VREFVA 506



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 72/312 (23%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---------------------- 38
           M +RD+VSWN +I+ +++ G   +  ALF  M +  ++                      
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239

Query: 39  --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
                    PD V++V+VL AC Q   +  G  ++ +     +     ICNAL+ MYAKC
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
           G +D A  L D M+DKD +S+S +I G   HG   +A+ LF  M++ G            
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEG------------ 347

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRN 208
                              VRPN +T   + S  S+   +  G   H   + + Y  +  
Sbjct: 348 ------------------KVRPNVITFVGLLSACSYAGLVDEGLS-HFDRMNDVYGVEPG 388

Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI----IWTAIISAYAAHGDASKAVSLFN 264
           +     ++D   ++G +   +R  D  +   +     +W +++SA  +HGD   AV    
Sbjct: 389 VEHYGCVVDLLGRSGQI---RRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445

Query: 265 EMLNNGIQPDPV 276
            ++   ++PD V
Sbjct: 446 RLVE--LEPDDV 455



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 149/346 (43%), Gaps = 65/346 (18%)

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH-EAVLDLVREMQASGVRPNA----- 174
           H  V  A  +F  ++ P L   NA+I    QN++H +AV   +R ++     P+      
Sbjct: 59  HRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGD 118

Query: 175 -VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
             T   +       + L+ GK++H + V++  D +  V  ++I+ Y + G L  A +VFD
Sbjct: 119 RFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFD 178

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
             + R ++ W  +ISA+A  G   KA +LFN M +  I    VT+TA++S     G    
Sbjct: 179 EMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTI----VTWTAMVSGYTTVGDYPG 234

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
           A D F +M  + G +P                      + VS + V P+    GAL    
Sbjct: 235 AVDAFRSMQTE-GFEP----------------------DDVSIVAVLPACAQLGAL---- 267

Query: 354 SISGDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
                 ELG+++   C     +   +  N ++   +Y++ G  D+A ++ + M +  +  
Sbjct: 268 ------ELGRWIYAYCKRHGMLTSTHICNALM--EMYAKCGCIDQALQLFDGMADKDVI- 318

Query: 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
               SW    GGL +       G   E ++L  E     M +EG V
Sbjct: 319 ----SWSTVIGGLAAH------GRAHEAVWLFTE-----MEKEGKV 349



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
            +HG+ V+ R  ++ Y+AT I+        +  A RVF + +  +L +  A+I AYA + 
Sbjct: 32  RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91

Query: 255 DASKAVSLFNEMLNNGIQP-------DPVTFTAVLSAC 285
               AV+++  ML     P       D  T+  +L AC
Sbjct: 92  QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKAC 129


>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
 gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
          Length = 530

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/426 (36%), Positives = 229/426 (53%), Gaps = 4/426 (0%)

Query: 27  ALFREMLNSPVLRPDGVTVVSVLQA-CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85
           ALF  ML      P+      VL+A C     +V    +H    +       +I  +L+ 
Sbjct: 100 ALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLV--RSIHCHACKDGFYGHDFIRTSLLD 157

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
            Y++ G +  AR L D ++D++ VS++A++SGY   G V  A+ LF+ M +  +  WNA+
Sbjct: 158 GYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAI 217

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I+G  QN      + + R M   G RPN  T+S + S   H   LK GK IHGYA ++  
Sbjct: 218 IAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCV 277

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
                V   +ID Y K G L  A+ +FD F  R L  W ++I+  A HG +  A+++FN 
Sbjct: 278 GFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNS 337

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M N G+QPD VTF  +L+AC H G VD+    F  M  ++GI+P +EHY C+V +L RA 
Sbjct: 338 MRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAG 397

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           R  +A  F++ M V+P   +WG+LL    I   +EL +    +L ++ P N    +++AN
Sbjct: 398 RFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVMLAN 457

Query: 386 LYSQAGRWDEADRVREQMKESGLA-KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444
           LYS+ G W+E  +VR+ MKE     K+PG SWIE     + F + D    +SE IY  L+
Sbjct: 458 LYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRFYSGDDGHPESEDIYDTLD 517

Query: 445 RLLGLM 450
           +L   M
Sbjct: 518 KLATTM 523



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ +WN++IAG +Q G + E   +FR M++    RP+G TV  +L ACG    +  
Sbjct: 206 MPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEG-FRPNGTTVSCLLSACGHLGMLKI 264

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +   S +     + N LI MY KCG+L  A+ + D  SD+   +++++I+   +
Sbjct: 265 GKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLAL 324

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG  E A+ +F  M+  G+        GL+    H   +D
Sbjct: 325 HGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVD 364



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFV--EKAMD---LFQVMKRPGLSTWNAVIS 147
           L YAR L D     +   YSA++S Y        E A D   LF  M R G    N  + 
Sbjct: 59  LPYARRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVY 118

Query: 148 GLVQNNRHEAVLDLVREMQA----SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            LV        + LVR +       G   +    +S+   +S +  +   +++       
Sbjct: 119 PLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKL----FDG 174

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             DRN+   TA++  YA+ G +  A  +F+R   R +  W AII+    +G   +AV +F
Sbjct: 175 LTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIF 234

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLV 291
             M++ G +P+  T + +LSAC H G++
Sbjct: 235 RRMVDEGFRPNGTTVSCLLSACGHLGML 262


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 252/473 (53%), Gaps = 38/473 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD VSWN++IA + Q     +  +LF  ML S  + PD  T  SV++AC     + +
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRS-TMEPDDFTYGSVVKACAGQQALNY 459

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H  +I+S + +D ++ +AL+ MY KCG L  A  +   + +K  VS          
Sbjct: 460 GTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVS---------- 509

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++ISG     + E       +M   G+ P+  T +++
Sbjct: 510 ---------------------WNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATV 548

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             + ++ + ++ GK+IH   +K +   ++Y+A+ ++D Y+K G +  ++ +F++   R  
Sbjct: 549 LDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDY 608

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W+A+I AYA HG   KA++LF EM    ++P+   F +VL ACAH G VDK    F  
Sbjct: 609 VTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQK 668

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+ P +EHY+CMV +L R+ +++EA + +  MP +    +W  LL    + G+VE
Sbjct: 669 MLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVE 728

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +   + L +++P+++  Y+++AN+Y+  G W E  ++R  MK   L K PG SWIE  
Sbjct: 729 VAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVR 788

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV------LLDEVEEESAY 467
             + +F+  D +  +SE+IY     L+  M+  GYV      L +E+EE+  Y
Sbjct: 789 DEVHTFLVGDKAHPRSEEIYEQTHLLVDEMKWAGYVPDIDFMLDEEMEEQDPY 841



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 32/286 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+VSWNS+++ Y   G   +   +F  M  S  +  D  T   +L+AC    D   
Sbjct: 98  MPERDVVSWNSLLSCYLHNGVNRKSIEIFVRM-RSLKIPHDYATFAVILKACSGIEDYGL 156

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G++VH   I+   + D+   +AL+ MY+KC  LD A  +  EM +++             
Sbjct: 157 GLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERN------------- 203

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                             L  W+AVI+G VQN+R    L L ++M   G+  +  T +S+
Sbjct: 204 ------------------LVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F   +  S  K G ++HG+A+K+ +  +  + TA +D YAK   +  A +VF+       
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPR 305

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
             + AII  YA      KA+ +F  +  N +  D ++ +  L+AC+
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS 351



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 201/464 (43%), Gaps = 82/464 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV---TVVSVLQACGQSSD 57
           M +R++V W+++IAGY Q   + E   LF++ML   +    GV   T  SV ++C   S 
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGM----GVSQSTYASVFRSCAGLSA 254

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
              G ++H   ++S    D  I  A + MYAKC          + M D            
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC----------ERMFD------------ 292

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
                    A  +F  +  P   ++NA+I G  + ++    LD+ + +Q + +  + +++
Sbjct: 293 ---------AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISL 343

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
           S   +  S       G ++HG AVK     NI VA  I+D Y K G L  A  +F+  + 
Sbjct: 344 SGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMER 403

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----------- 286
           R  + W AII+A+  + +  K +SLF  ML + ++PD  T+ +V+ ACA           
Sbjct: 404 RDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEI 463

Query: 287 HSGLVDKA----WDIFNAMSGQYG----------IQPSVEH-----YACMVGVLSRARRI 327
           H  ++       W + +A+   YG          I   +E      +  ++   S  ++ 
Sbjct: 464 HGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQS 523

Query: 328 SEATEFVSK---MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI--I 382
             A  + S+   M + P    +  +L   +    +ELGK +   + +++  ++  YI   
Sbjct: 524 ENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQL-HSDVYIAST 582

Query: 383 MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
           + ++YS+ G   ++  + E        K P R ++  S  + ++
Sbjct: 583 LVDMYSKCGNMQDSRLMFE--------KAPKRDYVTWSAMICAY 618



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 121/244 (49%)

Query: 43  VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE 102
           +T   +LQ C     +  G +VH  +I +     +++ N L+  Y K   ++YA  + D 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162
           M  +D +S++ +I GY   G +  A  LF  M    + +WN+++S  + N  +   +++ 
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
             M++  +  +  T + I    S   +   G ++H  A++  ++ ++   +A++D Y+K 
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
             L  A RVF     R+L+ W+A+I+ Y  +    + + LF +ML  G+     T+ +V 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 283 SACA 286
            +CA
Sbjct: 247 RSCA 250



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 44/225 (19%)

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
           +T S I    S+   L  GK++H   +   +   IYVA  ++  Y K+  ++ A +VFDR
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
              R +I W  +I  YA  G+   A SLF+ M     + D V++ ++LS   H+G+  K+
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSM----PERDVVSWNSLLSCYLHNGVNRKS 122

Query: 295 WDIF-------------------NAMSG---------------QYGIQPSVEHYACMVGV 320
            +IF                    A SG               Q G +  V   + +V +
Sbjct: 123 IEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
            S+ +++ +A     +MP +        + + A I+G V+  +F+
Sbjct: 183 YSKCKKLDDAFRVFREMPER------NLVCWSAVIAGYVQNDRFI 221


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 258/462 (55%), Gaps = 7/462 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIV 59
           M +R++VS+NS+I+G ++  F++E    FREM N    L  D  T+VS++  C     + 
Sbjct: 170 MPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVK 229

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
           +  +VH        + +L + NALI  Y KCG  + +  L   M +KD VS+++++  Y 
Sbjct: 230 WLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYT 289

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               ++ A  +F  M      +W A+ISG V+N R    L++  +M   GV P A T  S
Sbjct: 290 RASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVS 349

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRF- 235
           +    +  + +  GK++H   ++ R   N   +YV  A++D YAK G +  A+ +F+   
Sbjct: 350 VLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMI 409

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             + ++ W  +I+ +A +G    ++++F+ M+ + I+P+ VTF  VLSAC H+GLV+   
Sbjct: 410 HVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGL 469

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV--WGALLYGA 353
           ++ ++M  +YG++P   HYA ++ +L R  R+ EA   + K+P + S  +  WGA+L G 
Sbjct: 470 ELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGC 529

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
            + G++EL +   + LF +EPENTG Y++++N+Y+ +GRW + +R+R  MKE GL K P 
Sbjct: 530 RVHGNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWSDTNRIRNVMKERGLKKEPA 589

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
            S IE       FVAKD    +  +I     +L+  M + GY
Sbjct: 590 FSRIELKESRHEFVAKDKFHPQIGEIREANSKLVQHMMDVGY 631



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 134/284 (47%), Gaps = 33/284 (11%)

Query: 47  SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
           S++  C  +  +  G  +H+ +I++ +  + ++ N LI +Y+KCG  +      D++ +K
Sbjct: 83  SLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNK 142

Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
              +++ ++S Y   G   +A  LF  M +  L ++N++ISGL ++  H+  +   REMQ
Sbjct: 143 TTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQ 202

Query: 167 --ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG- 223
               G+  +  T+ S+ S  S    +K  +++HG A    +  N+ +  A+ID Y K G 
Sbjct: 203 NGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGE 262

Query: 224 ------------------------------FLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
                                          +  A +VF+    +  + W A+IS +  +
Sbjct: 263 PNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKN 322

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           G   +A+ +F++M+  G+ P   TF +VL ACA   L+ +   +
Sbjct: 323 GRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQV 366



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 176 TISSIFSLFSHF---SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
           TI    SL S+     +LK GK +H   +K       ++A  +ID Y+K G      + F
Sbjct: 77  TIEKFSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAF 136

Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
           D    ++   W  ++S Y+  G  ++A  LF+EM     Q + V++ +++S         
Sbjct: 137 DDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEM----PQRNLVSYNSLISGLTRHEFHK 192

Query: 293 KAWDIFNAMSGQYG 306
           +A   F  M    G
Sbjct: 193 EAVKFFREMQNGVG 206


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/423 (33%), Positives = 245/423 (57%), Gaps = 10/423 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R +VSWN+M++GY+QGG  EE   LF +ML+   ++PD  T V+V+ +C    D   
Sbjct: 226 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCL 285

Query: 61  GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEM---SDKDEVSYSAIIS 116
              +   + ++   + + ++  AL+ M+AKCG+L+ A  + +++     +  V ++A+IS
Sbjct: 286 SESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 345

Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAV 175
            Y   G +  A  LF  M +    +WN++I+G  QN      + L  EM +S   +P+ V
Sbjct: 346 AYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEV 405

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
           T+ S+FS   H   L  G        +N    +I V  ++I  Y++ G +  A  +F   
Sbjct: 406 TMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEM 465

Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
             R L+ +  +IS +A HG   +++ L  +M  +GI+PD +T+ A+L+AC+H+GL+ +  
Sbjct: 466 ATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQ 525

Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
            +F ++       P V+HYACM+ +L RA R+ EA + +  MP++P A ++G+LL   SI
Sbjct: 526 RLFESIKF-----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSI 580

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
              VELG+     LF++EP N+GNY++++N+Y+ AGRW + D+VR+ M++ G+ K  G S
Sbjct: 581 HKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLS 640

Query: 416 WIE 418
           W+E
Sbjct: 641 WLE 643



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 209/486 (43%), Gaps = 105/486 (21%)

Query: 5   DIVSWNSMIAGYSQGGFYEECK-ALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           D+  +  M+  YSQ G   +   +LF+ ML    ++P+      ++++ G  S +     
Sbjct: 66  DVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSESMLFLA-- 123

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
               V++S    D ++ N ++G+YAK G +++AR L DEM D+    ++ +ISGY   G 
Sbjct: 124 ---HVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGN 180

Query: 124 VEKAMDLFQVM--------------------KRPGLST---------------WNAVISG 148
            E+A  LF VM                    K+  L T               WNA++SG
Sbjct: 181 EEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSG 240

Query: 149 LVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD- 206
             Q    E  + L  +M + G V+P+  T  ++ S  S       G      ++  + D 
Sbjct: 241 YAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSL-----GDPCLSESIVRKLDD 295

Query: 207 -----RNIYVATAIIDTYAKTGFLHGAQRVFDR---FKGRSLIIWTAIISAYA------- 251
                 N +V TA++D +AK G L  A ++F++   +K RS + W A+ISAYA       
Sbjct: 296 TVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 355

Query: 252 ------------------------AHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACA 286
                                    +G++ KA+ LF EM+++   +PD VT  +V SAC 
Sbjct: 356 ARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACG 415

Query: 287 HSGLVDKA-WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
           H G +    W +  ++  +  IQ S+  Y  ++ + SR   + +A     +M  +     
Sbjct: 416 HLGELGLGNWAV--SILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATR----- 468

Query: 346 WGALLYGASISGDVELGKFV--CDHLFE-----IEPENTGNYIIMANLYSQAGRWDEADR 398
              + Y   ISG  E G  +   + L +     IEP+    YI +    S AG   E  R
Sbjct: 469 -DLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRI-TYIAILTACSHAGLLGEGQR 526

Query: 399 VREQMK 404
           + E +K
Sbjct: 527 LFESIK 532


>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
          Length = 491

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 255/455 (56%), Gaps = 5/455 (1%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ--SSDIVFGMEV 64
           VSW S I   ++ G   E    F +M  S V  P+ +T +++L  CG   S        +
Sbjct: 28  VSWTSRITLLTRNGRLAEAAKXFSDMRLSGV-EPNHITFIALLSGCGDFPSGSETLSNLL 86

Query: 65  HNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           H +  +  + +  + +  A+IGMY+K G +  AR + D M D + V+++ +I GYM  G 
Sbjct: 87  HGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQ 146

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           V+ A+ +F  M    L +W A+I+G V+   HE  L   REMQ SGVRP+ V I +  + 
Sbjct: 147 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNA 206

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            ++   L  G  +H Y +   +  N+ V+ ++ID Y + G +  A+ VFD+ + R+++ W
Sbjct: 207 CTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSW 266

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
            ++I  +AA+G+A +++  F +M   G +PD VTFT  L+AC+H GLV++    F  M  
Sbjct: 267 NSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKR 326

Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVELG 362
            YGI P +EHY C+V + SRA R+ +A + +  MP+KP+  V G+LL      G +  L 
Sbjct: 327 DYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLA 386

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           + +  HL ++  ++  NY+I++N+Y+  G+W+ A ++R +MK  GL K PG S IE    
Sbjct: 387 ERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDC 446

Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL 457
              F+A D++  ++  I  +LE +   +R +G V+
Sbjct: 447 THVFMAGDSAHVETAIIREVLELVSSDLRLQGCVV 481



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 131/263 (49%), Gaps = 42/263 (15%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SW +MI G+ + GF+EE    FREM  S V RPD V +++ L AC     + F
Sbjct: 157 MPERDLISWTAMINGFVKKGFHEEALVWFREMQISGV-RPDYVAIIAALNACTNLGALSF 215

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH +V+    K ++ + N+LI +Y +CG +++AR + D+M  +  VS++++I G+  
Sbjct: 216 GLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAA 275

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G                              N HE+++   R+MQ  G +P+AVT +  
Sbjct: 276 NG------------------------------NAHESLV-YFRKMQEEGFKPDAVTFTGA 304

Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
            +  SH   ++ G          Y +  R +        ++D Y++ G L  A +V +  
Sbjct: 305 LTACSHVGLVEEGLRYFQTMKRDYGISPRIEH----YGCLVDLYSRAGRLEDALKVIESM 360

Query: 236 KGR-SLIIWTAIISAYAAHGDAS 257
             + + ++  ++++A   HG+ +
Sbjct: 361 PMKPNEVVIGSLLAACRTHGNNT 383


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/455 (32%), Positives = 243/455 (53%), Gaps = 32/455 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD ++W +M+ G++Q G   +    FR M    +   D  T  S+L ACG  S +  
Sbjct: 232 MTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIA-IDQYTFGSILTACGALSALEQ 290

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H ++I +H   ++++ +AL+ MY+KC S+  A      MS K+ +S          
Sbjct: 291 GKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIIS---------- 340

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                W A+I G  QN   E  + +  EMQ  G+ P+  T+ S+
Sbjct: 341 ---------------------WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSV 379

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            S  ++ ++L+ G + H  A+ +     I V+ A++  Y K G +  A R+FD       
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + WTA+++ YA  G A + + LF +ML   ++PD VTF  VLSAC+ +G V+K    F++
Sbjct: 440 VSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHS 499

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   +GI P  +HY CM+ + SR+ R+ EA EF+ +MP+ P A  WG LL    + GD+E
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           +G++  ++L EI+P+N  +Y+++ ++++  G W++  ++R  M++  + K PG SWI+  
Sbjct: 560 IGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
             +  F A D S   S+ IY  LE L   M EEGY
Sbjct: 620 NKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGY 654



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 222/443 (50%), Gaps = 44/443 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLQACGQSSDIV 59
           M++RD VS+N++IAG+S GG +     L+  +L +   +RP  +T+ +++ A     D  
Sbjct: 98  MAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRA 157

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G + H  ++     ++ ++ + L+GMYAK G +  A+ + DEM  K+ V Y+ +I+G +
Sbjct: 158 LGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLL 217

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
               VE+A  LF+VM      TW  +++G  QN      L+  R M+  G+  +  T  S
Sbjct: 218 RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGS 277

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I +     S L+ GK+IH Y ++  YD N++V +A++D Y+K   +  A+  F R   ++
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKN 337

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------ 287
           +I WTA+I  Y  +G + +AV +F+EM  +GI PD  T  +V+S+CA+            
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC 397

Query: 288 ----SGLVDKAWDIFNAMSGQYGIQPSVE---------------HYACMVGVLSRARRIS 328
               SGL+     + NA+   YG   S+E                +  +V   ++  R  
Sbjct: 398 LALVSGLMHYI-TVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAK 456

Query: 329 EATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-----TGNY 380
           E  +   KM    VKP    +  +L   S +G VE G   C +   ++ ++       +Y
Sbjct: 457 ETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKG---CSYFHSMQKDHGIVPIDDHY 513

Query: 381 IIMANLYSQAGRWDEADRVREQM 403
             M +LYS++GR  EA+   +QM
Sbjct: 514 TCMIDLYSRSGRLKEAEEFIKQM 536



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 37/316 (11%)

Query: 79  ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD-LFQVMKRP 137
           + N L+  Y K G    AR + D     +  +Y+A++S  + H  +   MD LF  M + 
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLS-TLAHARLLDDMDSLFASMAQR 101

Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISSIFSLFSHFSNLKGGKE 195
              ++NAVI+G      H   + L   +  +G  VRP+ +T+S++    S   +   G++
Sbjct: 102 DTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQ 161

Query: 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------------------ 237
            H   ++  +  N +V + ++  YAK G +  A+RVFD   G                  
Sbjct: 162 FHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKM 221

Query: 238 -------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
                        R  I WT +++ +  +G  S+A++ F  M   GI  D  TF ++L+A
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281

Query: 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK 344
           C     +++   I +A   +     +V   + +V + S+ R I  A     +M  K +  
Sbjct: 282 CGALSALEQGKQI-HAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCK-NII 339

Query: 345 VWGALLYGASISGDVE 360
            W AL+ G   +G  E
Sbjct: 340 SWTALIVGYGQNGCSE 355


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 230/411 (55%), Gaps = 7/411 (1%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVH-NFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
           PD VT+ SV+ AC   +    G +VH + V    ++ D+ + NAL+ MYAKCG    AR 
Sbjct: 8   PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 67

Query: 99  LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158
           + D M  +  VS ++I++GY     VE A  +F  M    +  WN +I+   QN   E  
Sbjct: 68  IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 127

Query: 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN--RYD----RNIYVA 212
           + L  +++   + P   T  ++ +   + + L+ G++ H + +K   R+D     +++V 
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 187

Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
            +++D Y KTG +    +VF+R   R  + W A+I  YA +G A  A+ LF  ML +   
Sbjct: 188 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 247

Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
           PD VT   VLSAC HSGLVD+    F+ M+  +GI PS +HY CMV +L RA  + EA E
Sbjct: 248 PDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEE 307

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
            +  MP +P + +W +LL    +  +VELG+     LFE++PEN+G Y++++N+Y++ G+
Sbjct: 308 LIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGK 367

Query: 393 WDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
           W +  RVR  MK+ G++K PG SWIE    +  F+A+D       +I+  L
Sbjct: 368 WADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTL 418



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 104/207 (50%), Gaps = 12/207 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++++WN +IA Y+Q G  EE   LF ++    +  P   T  +VL ACG  + +  
Sbjct: 103 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIW-PTHYTYGNVLNACGNIAVLQL 161

Query: 61  GMEVHNFVIESHIKM------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
           G + H  V++   +       D+++ N+L+ MY K GS+D    + + M+ +D VS++A+
Sbjct: 162 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 221

Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-----MQASG 169
           I GY  +G  + A+ LF+ M     +  +  + G++    H  ++D  R       +  G
Sbjct: 222 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHG 281

Query: 170 VRPNAVTISSIFSLFSHFSNLKGGKEI 196
           + P+    + +  L     +LK  +E+
Sbjct: 282 ITPSRDHYTCMVDLLGRAGHLKEAEEL 308



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 7/129 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD VSWN+MI GY+Q G  ++   LF  ML S    PD VT++ VL ACG S  +  
Sbjct: 210 MAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE-NPDSVTMIGVLSACGHSGLVDE 268

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEM-SDKDEVSYSAIIS 116
           G    +F+ E H      D + C  ++ +  + G L  A  L+ +M ++ D V +++++ 
Sbjct: 269 GRRHFHFMTEDHGITPSRDHYTC--MVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLG 326

Query: 117 GYMVHGFVE 125
              +H  VE
Sbjct: 327 ACRLHKNVE 335



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTG 223
           M A+G  P+ VT+SS+ S  +  +  + G+++H + VK +R   ++ +  A++D YAK G
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 224 FLHGAQRVFDRFKGRS-------------------------------LIIWTAIISAYAA 252
               A+ +FD    RS                               +I W  +I+AYA 
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           +G+  +A+ LF ++  + I P   T+  VL+AC +
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 155


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/458 (33%), Positives = 255/458 (55%), Gaps = 16/458 (3%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD--- 57
           M  RD  SWN ++A   + G  +E + LF  M    V+     T++S L   G + +   
Sbjct: 159 MPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVM--SWTTMISGLARSGSADEARA 216

Query: 58  IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           +  GM   N V         W  NA+I  YA+   +D A  L   M ++D  S++ +I+G
Sbjct: 217 LFDGMPERNVVS--------W--NAMISGYARNLRIDEALDLFMNMPERDVASWNIMITG 266

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
           ++ +  ++KA +LF  M +  + +W  +++G +Q N  E  L +   M   G+RPN VT 
Sbjct: 267 FIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTF 326

Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
                  S+ + L  G+++H    K  +  + ++ ++++  YAK G +  A++VFD    
Sbjct: 327 LGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGE 386

Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
           + +I W  +I+AYA HG   +A++L+ +M  N  +P+ VT+  +LSAC+HSGLVD+   I
Sbjct: 387 KDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRI 446

Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP-SAKVWGALLYGASIS 356
           F  M+    I    EHY+C++ + SRA R+ +A   ++ + +KP S+ VW ALL G +  
Sbjct: 447 FEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAH 506

Query: 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
           G+  +G     +L E EP+N G Y +++N+Y+ AG+W EA ++R +M + GL K PG SW
Sbjct: 507 GNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSW 566

Query: 417 IECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
           IE +  +  FVA+D S  +SE IY +L+ +  +MR +G
Sbjct: 567 IELANKVHVFVARDKSHSESELIYSLLQDIHHMMRMDG 604



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 196/436 (44%), Gaps = 51/436 (11%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           RD+VSW +M+A Y++ G   E  AL    L+ P  R + VT  ++L    ++  +     
Sbjct: 68  RDVVSWTAMVAAYARQGQLHEASAL----LHRPDARRNVVTWTALLSGYARARRVDEARA 123

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           + + + E ++    W  N ++  YA  G +  A AL D M  +D  S++ +++  +  G 
Sbjct: 124 LFDRMPERNVVS--W--NTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGT 179

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
           +++A  LF+ M    + +W  +ISGL ++   +    L   M       N V+ +++ S 
Sbjct: 180 MDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPER----NVVSWNAMISG 235

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           ++   NL+  + +  +   N  +R++     +I  + +   L  AQ +FD    R+++ W
Sbjct: 236 YAR--NLRIDEALDLFM--NMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSW 291

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
           T +++      ++  A+ +FN ML +GI+P+ VTF   + A ++   + +   +   +  
Sbjct: 292 TTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICK 351

Query: 304 ---QYG--IQPSVEHYACMVGVLSRARRI-------------------------SEATEF 333
              Q+   I+ S+       G +  AR++                          EA   
Sbjct: 352 TPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIAL 411

Query: 334 VSKMP---VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYS 388
             KM     KP+   +  LL   S SG V+ G  + +++ + +       +Y  + +L S
Sbjct: 412 YEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCS 471

Query: 389 QAGRWDEADRVREQMK 404
           +AGR D+A R+   +K
Sbjct: 472 RAGRLDDAKRLINGLK 487



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
           I   A  G +  A+R+FDR   R ++ WTA+++AYA  G   +A +L +       +PD 
Sbjct: 46  IAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLH-------RPDA 98

Query: 276 ----VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
               VT+TA+LS  A +  VD+A  +F+ M      + +V  +  M+   + A R+  A 
Sbjct: 99  RRNVVTWTALLSGYARARRVDEARALFDRMP-----ERNVVSWNTMLEAYASAGRMGAAC 153

Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQA 390
                MPV+  A  W  LL     SG ++  +     LFE  PE N  ++  M +  +++
Sbjct: 154 ALFDGMPVR-DAGSWNILLAALVRSGTMDEAR----RLFERMPERNVMSWTTMISGLARS 208

Query: 391 GRWDEADRVREQMKE 405
           G  DEA  + + M E
Sbjct: 209 GSADEARALFDGMPE 223



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 24/210 (11%)

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFN 264
           DR++   TA++  YA+ G LH A  +  R    R+++ WTA++S YA      +A +LF+
Sbjct: 67  DRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNVVTWTALLSGYARARRVDEARALFD 126

Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM----SGQYGIQPSVEHYACMVGV 320
            M    +    V++  +L A A +G +  A  +F+ M    +G + I         ++  
Sbjct: 127 RMPERNV----VSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNI---------LLAA 173

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTGN 379
           L R+  + EA     +MP + +   W  ++ G + SG  +  +     LF+  PE N  +
Sbjct: 174 LVRSGTMDEARRLFERMPER-NVMSWTTMISGLARSGSADEAR----ALFDGMPERNVVS 228

Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLA 409
           +  M + Y++  R DEA  +   M E  +A
Sbjct: 229 WNAMISGYARNLRIDEALDLFMNMPERDVA 258


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/455 (32%), Positives = 246/455 (54%), Gaps = 1/455 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+VSW ++I GY++GG  +E   +F  M+ +  + P+ VT+V+   A GQ   +  
Sbjct: 192 MADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ES  +M + + NAL+ M+ KCG +  A+ + D M  KD  S+++++S Y  
Sbjct: 252 GRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAK 311

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF+ +    + +W+ +++     N  +  + +  +M A+GV P   T+ S+
Sbjct: 312 CGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSV 371

Query: 181 FSLFSHFSNLKGGKEIHG-YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +   +L  G  ++  Y V ++ +    ++ A ID +AK G +  A R+F   + ++
Sbjct: 372 LSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKN 431

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A+  HG   +A+ LF E   NGI PD  T+  VLSAC+H GLV +    F 
Sbjct: 432 VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFK 491

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI+P  EHYACM+ +L +   + EA E    MPV      WGALL    + G+V
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+GK   D L  ++P ++G Y++M+ +Y+   +W +   +R  M++  + K PG S IE 
Sbjct: 552 EIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEV 611

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEG 454
            G    F+  D S   SE IY  L  +    + EG
Sbjct: 612 DGKCHEFLVADVSHVHSEDIYAALGNIYLHSKAEG 646



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 40/317 (12%)

Query: 11  SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70
           +M+ G+ + G       LFR +L    L  D  T+V  ++A   SS     +    F   
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRD-RLAVDARTIVFAVKAAATSSSPTEAIHCVAFK-R 159

Query: 71  SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDL 130
             I   +   NAL+ MY     L  AR L DEM+D+D VS++ +I GY   G  ++A  +
Sbjct: 160 GFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRV 219

Query: 131 FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
           F                               R + A  V PN VT+ +  S       L
Sbjct: 220 F------------------------------CRMVVAESVWPNEVTLVAAASAAGQMGLL 249

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
             G+ +H   V++    ++ +  A++D + K G +  A+ VFD    + +  WT+++SAY
Sbjct: 250 GLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAY 309

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
           A  GD   A  LF E+ N  +    V+++ +++A +H+ + D+A  IFN M    G++P 
Sbjct: 310 AKCGDLENAAKLFKEIPNRNV----VSWSCMVAAYSHANMPDEAIRIFNDMIAA-GVEPI 364

Query: 311 VEHYACMVGVLSRARRI 327
               A +V VLS   ++
Sbjct: 365 ---DATLVSVLSACAQL 378


>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 249/453 (54%), Gaps = 31/453 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +S+ D+   N +I  Y+    + E   ++  M    +  P+  T   VL+ACG       
Sbjct: 78  LSEPDVFCCNVVIKVYANADPFGEALKVYDAMRWRGIT-PNYYTYPFVLKACGAEGASKK 136

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H   ++  + +DL++ NAL+  YAKC  ++ +R + DE+  +D VS++++ISGY V
Sbjct: 137 GRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTV 196

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G+V+ A+ LF                            D++R+    G  P+  T  ++
Sbjct: 197 NGYVDDAILLF---------------------------YDMLRDESVGG--PDHATFVTV 227

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
              F+  +++  G  IH Y VK R   +  V T +I  Y+  G++  A+ +FDR   RS+
Sbjct: 228 LPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSV 287

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I+W+AII  Y  HG A +A++LF +++  G++PD V F  +LSAC+H+GL+++ W +FNA
Sbjct: 288 IVWSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNA 347

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YG+  S  HYAC+V +L RA  + +A EF+  MP++P   ++GALL    I  ++E
Sbjct: 348 ME-TYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNME 406

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           L +   + LF ++P+N G Y+I+A +Y  A RW +A RVR+ +K+  + K  G S +E  
Sbjct: 407 LAELAAEKLFVLDPDNAGRYVILAQMYEDAERWQDAARVRKVVKDKEIKKPIGYSSVELE 466

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
            G Q F   D +   + QI+ IL  L  +M +E
Sbjct: 467 SGHQKFGVNDETHVHTTQIFQILHSLDRIMGKE 499



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 36/261 (13%)

Query: 31  EMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
           + L  P L  D      +L  C  + ++    + H  V+    + D +I   LI  Y+  
Sbjct: 9   QQLLRPKLHKDSFYYTELLNLCKTTDNV---KKAHAQVVVRGHEQDPFIAARLIDKYSHF 65

Query: 91  GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
            +LD+AR + D +S+ D    + +I  Y       +A+ ++  M+      W        
Sbjct: 66  SNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYDAMR------WR------- 112

Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
                             G+ PN  T   +          K G+ IHG+AVK   D +++
Sbjct: 113 ------------------GITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLF 154

Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
           V  A++  YAK   +  +++VFD    R ++ W ++IS Y  +G    A+ LF +ML + 
Sbjct: 155 VGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDE 214

Query: 271 I--QPDPVTFTAVLSACAHSG 289
               PD  TF  VL A A + 
Sbjct: 215 SVGGPDHATFVTVLPAFAQAA 235



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 2/167 (1%)

Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
           K+ H   V   ++++ ++A  +ID Y+    L  A++VFD      +     +I  YA  
Sbjct: 37  KKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANA 96

Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH 313
               +A+ +++ M   GI P+  T+  VL AC   G   K   + +  + + G+   +  
Sbjct: 97  DPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEG-ASKKGRVIHGHAVKCGMDLDLFV 155

Query: 314 YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
              +V   ++ + +  + +   ++P +     W +++ G +++G V+
Sbjct: 156 GNALVAFYAKCQDVEVSRKVFDEIPHRDIVS-WNSMISGYTVNGYVD 201


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 212/375 (56%)

Query: 82  ALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST 141
           A+I  +A  G +  A+ L D M +K  VS +A+++ Y  HG ++ A  LF  M+      
Sbjct: 98  AIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 157

Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
           WN +I G  QN      L L R M  +  +PN VT+ S+ S       L+ G+ +H Y  
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 217

Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
            N    N++V TA++D Y+K G L  A+ VFD+   + ++ W ++I  YA HG + +A+ 
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 277

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
           LF  M   G+ P  +TF  +LSAC HSG V + WDIFN M  +YGI+P +EHY CMV +L
Sbjct: 278 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 337

Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381
            RA  + +A E V  M ++P   +WG LL    + G + LG+ + + L +    N+G YI
Sbjct: 338 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 397

Query: 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYL 441
           +++N+Y+  G WD   R+R  MK+SG+ K PG S IE +  +  F+A   +  K ++IY+
Sbjct: 398 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYM 457

Query: 442 ILERLLGLMREEGYV 456
           +LE + G ++  GY 
Sbjct: 458 MLEEINGWLKSHGYT 472



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 20/287 (6%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD V WN MI GY+Q G   E   LFR ML +   +P+ VTV+SVL ACGQ   +  
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA-KPNEVTVLSVLSACGQLGALES 208

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH+++  + I+ ++ +  AL+ MY+KCGSL+ AR + D++ DKD V+++++I GY +
Sbjct: 209 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 268

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL----DLVREMQAS-GVRPNAV 175
           HGF ++A+ LF+ M R GL   N    G++    H   +    D+  +M+   G+ P   
Sbjct: 269 HGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 328

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG----AQRV 231
               + +L     +++   E+    VKN    NI     +  T      LHG     +++
Sbjct: 329 HYGCMVNLLGRAGHVEQAYEL----VKN---MNIEPDPVLWGTLLGACRLHGKIALGEKI 381

Query: 232 FDRFKGRSLI---IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
            +    ++L     +  + + YAA G+      L   M ++G++ +P
Sbjct: 382 VELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 428



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 23/220 (10%)

Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
           +IH    ++  D +  +   +  +YA  G L  +  +F R +  S+  WTAII  +A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
           D   A  LF+ M    +    V+ TA+L+  A  G +D A  +F+ M  + G+  +V   
Sbjct: 108 DVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV--- 160

Query: 315 ACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
             M+   ++    +EA     +M     KP+     ++L      G +E G++V  ++  
Sbjct: 161 --MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI-- 216

Query: 372 IEPENTGNYI------IMANLYSQAGRWDEADRVREQMKE 405
              EN G          + ++YS+ G  ++A  V +++ +
Sbjct: 217 ---ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 253


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 256/469 (54%), Gaps = 37/469 (7%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M K D++ W+ MI+ Y+Q     E   LF +M  + VL P+  T  SVLQ+C    ++  
Sbjct: 203 MPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL-PNQFTFASVLQSCASIENLQL 261

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V++  +  ++++ NAL+ +YAKCG LD +  L  E+ +++EV+++ +I GY+ 
Sbjct: 262 GKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQ 321

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G  +KA+ L+                               + M    V+ + VT SS+
Sbjct: 322 SGDGDKALSLY-------------------------------KNMLECQVQASEVTYSSV 350

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               +  + ++ G +IH  ++K  YD+++ V  A+ID YAK G +  A+ VFD    R  
Sbjct: 351 LRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDE 410

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           I W A+IS Y+ HG   +A+  F  M      P+ +TF ++LSAC+++GL+D   + F +
Sbjct: 411 ISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKS 470

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M   YGI+P +EHY CMV +L R+  + +A + + ++P++P+ KVW ALL    I  DV+
Sbjct: 471 MVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVD 530

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           LG      + +I+P++   +++++N+Y++  RW+    VR+ MK  G+ K PG SWIE  
Sbjct: 531 LGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQ 590

Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
           G +  F   DTS    + I  +LE L     + GYV     +L +VE++
Sbjct: 591 GIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDD 639



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 199/436 (45%), Gaps = 69/436 (15%)

Query: 4   RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
           +D+VSW  M+A Y++   +++   LF EM       P+  T   VL+AC        G  
Sbjct: 105 KDMVSWTGMVACYAENDRFQDSLQLFAEM-RMVGFNPNHFTFAGVLKACIGLEAFSVGKS 163

Query: 64  VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
           VH  V+++  +MDL++   L+ +Y K G             D ++V              
Sbjct: 164 VHGCVLKTCYEMDLYVGVGLLDLYTKFG-------------DANDV-------------- 196

Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
               + +F+ M +  +  W+ +IS   Q+N+    ++L  +M+ + V PN  T +S+   
Sbjct: 197 ----LRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQS 252

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
            +   NL+ GK++H + +K   D N++V+ A++D YAK G L  + ++F     R+ + W
Sbjct: 253 CASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTW 312

Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HS---- 288
             +I  Y   GD  KA+SL+  ML   +Q   VT+++VL ACA           HS    
Sbjct: 313 NTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLK 372

Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS------------------EA 330
            + DK   + NA+   Y    S+++   +  +LS    IS                  +A
Sbjct: 373 TIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKA 432

Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE---IEPENTGNYIIMANLY 387
            + + +    P+   + ++L   S +G +++G+     + +   IEP    +Y  M  L 
Sbjct: 433 FQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEP-CMEHYTCMVWLL 491

Query: 388 SQAGRWDEADRVREQM 403
            ++G  D+A ++ E++
Sbjct: 492 GRSGHLDKAVKLIEEI 507



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 38/360 (10%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  R+ VS+ ++I GY Q    +E   LF     S V R                     
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLF-----SRVHRE-------------------- 35

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALLDEMS-DKDEVSYSAIISGY 118
           G E++ FV  + +K+ + +         +C  L Y+  A + ++  + +    +A+I  Y
Sbjct: 36  GHELNPFVFTTILKLLVSV---------ECAELAYSLHACIYKLGHESNAFVGTALIDAY 86

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
            V G V  A   F  +    + +W  +++   +N+R +  L L  EM+  G  PN  T +
Sbjct: 87  AVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFA 146

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
            +            GK +HG  +K  Y+ ++YV   ++D Y K G  +   RVF+     
Sbjct: 147 GVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKH 206

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
            +I W+ +IS YA    + +AV LF +M    + P+  TF +VL +CA    +     + 
Sbjct: 207 DVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQV- 265

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           +    + G+  +V     ++ V ++  R+  + +   ++P +     W  ++ G   SGD
Sbjct: 266 HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEV-TWNTMIVGYVQSGD 324


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 244/449 (54%), Gaps = 32/449 (7%)

Query: 40  PDGVTVVSVLQACGQSSDIVFGMEVHNFV----IESHI---------------------- 73
           P   T  S+++AC   S++ FG  VH  +     +SH+                      
Sbjct: 8   PTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRV 67

Query: 74  -----KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
                + D++    +I ++A+ G +  AR L DEM  ++  S++A+I GY     VE A 
Sbjct: 68  FDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAE 127

Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
            LF  M    + +W  +I+   QN +    L +  EMQ +G+ P+ VT+++I S  +H  
Sbjct: 128 LLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLG 187

Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
            L  GKEIH YA++  +D ++Y+ +A+ID YAK G L  +  VF + + ++L  W +II 
Sbjct: 188 ALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIE 247

Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
             A HG A +A+++F+ M    I+P+ VTF +VL AC H+GLV++    F +MS  + I 
Sbjct: 248 GLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIP 307

Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
           P +EHY CMV +L +A  + +A E V  M ++P++ +WGALL G  +  ++++ +   + 
Sbjct: 308 PEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNE 367

Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI-PGRSWIECSGGLQSFV 427
              +EP N+G Y ++ N+Y++  RW E   +R  MKE G+ K  PG SWIE    +  F 
Sbjct: 368 SKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFA 427

Query: 428 AKDTSGDKSEQIYLILERLLGLMREEGYV 456
           A D S   S++IY +L  L G ++  GYV
Sbjct: 428 ASDKSHLASDEIYTLLVELDGQLKLSGYV 456



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 121/267 (45%), Gaps = 34/267 (12%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDI+SW +MIA YSQ   + E  A+F EM  + +  PD VT+ +++ AC     +  
Sbjct: 133 MPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGI-DPDEVTMATIISACAHLGALDL 191

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G E+H + +E    +D++I +ALI MYAKCGSLD +  +  ++  K+   +++II G  V
Sbjct: 192 GKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAV 251

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG+ E+A+ +F  M+R                                 ++PN VT  S+
Sbjct: 252 HGYAEEALAMFSRMQR-------------------------------EKIKPNGVTFISV 280

Query: 181 FSLFSHFSNL-KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
               +H   + +G K     +        I     ++D   K G L  A  +    +   
Sbjct: 281 LGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEP 340

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNE 265
           + +IW A++     H +   A    NE
Sbjct: 341 NSVIWGALLGGCKLHRNLKIAQVAVNE 367



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 25/254 (9%)

Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
           M  + V P + T SS+    S  S L  G+ +HG+  K  +D +++V TA++D Y   G 
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
           +  A+RVFD    R +  WT +IS +A  GD S A  LF+EM        PV  TA  +A
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEM--------PVRNTASWNA 112

Query: 285 C--AHSGL--VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-- 338
               +S L  V+ A  +F+ M  +      +  +  M+   S+ ++  EA    ++M   
Sbjct: 113 MIDGYSRLRNVESAELLFSQMPNR-----DIISWTTMIACYSQNKQFREALAVFNEMQTN 167

Query: 339 -VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII---MANLYSQAGRWD 394
            + P       ++   +  G ++LGK +  HL+ +E     +  I   + ++Y++ G  D
Sbjct: 168 GIDPDEVTMATIISACAHLGALDLGKEI--HLYAMEMGFDLDVYIGSALIDMYAKCGSLD 225

Query: 395 EADRVREQMKESGL 408
           ++  V  ++++  L
Sbjct: 226 KSLVVFFKLRKKNL 239


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 260/464 (56%), Gaps = 12/464 (2%)

Query: 3   KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
           +R++ SWN+M+AG  + G  ++  ALF EM    V     V+  +++    +  ++    
Sbjct: 98  RRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRNV-----VSYTTMVDGLARRGEVARAR 152

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           EV + + E ++    W   A+I  Y +    D AR L + M DK+ V+ +A+I+GY   G
Sbjct: 153 EVFDAMPERNLVS--WA--AMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDG 208

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            VE A  LF  +    + +WNA+I+G V N   E  + L   M   GV+P+  T+ +I +
Sbjct: 209 DVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILT 268

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             S  + L+ G+  H  A K   + +     A++  Y+K G +  ++ VF   K + ++ 
Sbjct: 269 ACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVS 328

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W  II+AYA HG   KA++LF+EM   G+ P+ +T  ++LSAC H G V+ + ++F+ MS
Sbjct: 329 WNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMS 388

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
            +Y I PS EHYAC+V +L RA ++ +A  ++ KMP +    VWGALL  +   G+V+LG
Sbjct: 389 SKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLG 448

Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
           +     L + +  ++G Y++++N+Y+ AG W E +RVR QMKE G+ K PG SW E +  
Sbjct: 449 ELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEIANK 508

Query: 423 LQSFVAKDTSGDKSEQIYLILERL---LGLMREEGYVLLDEVEE 463
           +  FV  D S  +  +I   L ++   + +M +E +++++  +E
Sbjct: 509 VNMFVGGDASHPEMNKIISELRKISFHMQMMTDETHMVVELAQE 552



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 24/250 (9%)

Query: 68  VIESHIKMDLWICNALIGMYAKCG-SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
           V ++  + D+   NAL+    + G  L  AR L D+M  ++ +S++++++G + HG ++ 
Sbjct: 29  VFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDA 88

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV------------RPNA 174
           A   F    R  +++WNA+++GLV+  R +    L  EM    V            R   
Sbjct: 89  ASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEV 148

Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-----------DRNIYVATAIIDTYAKTG 223
                +F      + +     I GY     +           D+N+   TA+I  Y K G
Sbjct: 149 ARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDG 208

Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
            +  A+R+FD    + +I W A+I+ Y  +G   +A+ L   M   G++PD  T  A+L+
Sbjct: 209 DVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILT 268

Query: 284 ACAHSGLVDK 293
           AC+   L+ +
Sbjct: 269 ACSALALLRQ 278



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 27/228 (11%)

Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA-YAAHGDASKAVSLFNEMLNNGIQPD 274
           I   A+ G +  A+RVFD    R ++ W A+++A + A  D   A  LF++M +  +   
Sbjct: 14  ITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNV--- 70

Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP--SVEHYACMVGVLSRARRISEATE 332
            +++ +V++ C   G +D A       S  +   P  +V  +  M+  L R  R+ +A  
Sbjct: 71  -ISWNSVVAGCLAHGDLDAA-------SAYFARAPRRNVASWNAMLAGLVRLGRMDDAWA 122

Query: 333 FVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
              +MP + +   +  ++ G +  G+V   + V D + E    N  ++  M   Y +   
Sbjct: 123 LFGEMPQR-NVVSYTTMVDGLARRGEVARAREVFDAMPE---RNLVSWAAMITGYVENAM 178

Query: 393 WDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440
           +DEA ++ E M        P ++ + C+  +  +  KD   + + +++
Sbjct: 179 FDEARKLFEAM--------PDKNVVACTAMITGY-CKDGDVESARRLF 217


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 237/435 (54%), Gaps = 21/435 (4%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL-RPDGVTVVSVL---QACGQSSDIVF 60
           D VS+N+M++ Y +    E  +A F +M   P+   P   T+++     Q   ++ D+  
Sbjct: 37  DAVSYNTMLSCYVRNSNMERAQAFFEDM---PIKDTPSWNTMITGFAQNQQMDKARDLFL 93

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            M   N V         W  NA+I  Y +CG LD A  L ++   K  V+++A+I+GYM 
Sbjct: 94  IMPTKNVVT--------W--NAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMK 143

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +  A  LF+ M    L TWNA+I+G ++N+R E  + L R M   G++PN+ T+SS 
Sbjct: 144 LGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSA 203

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
               S  S L+ G+++H    K+    +    T++I  Y K G L    ++F +   R +
Sbjct: 204 LLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDV 263

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W A+IS YA HG+  KA+ LF+EM+  G++PD +TF AVL AC H+G  D     F++
Sbjct: 264 VTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHS 323

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           M+  YG+    +HY CMV +L RA ++ EA + + KMP KP A V+G LL    I  + E
Sbjct: 324 MAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTE 383

Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
           + +F    L  ++P +   Y+ +AN+Y+   RWD   RVR+ MK   + K PG SWIE  
Sbjct: 384 MAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIE-- 441

Query: 421 GGLQSFVAKDTSGDK 435
             ++S   +  SGDK
Sbjct: 442 --VKSMAHQFRSGDK 454



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 81  NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           + L GM  K G L  A+ L  ++ + D VSY+ ++S Y+ +  +E+A   F+ M      
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTP 70

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           +WN +I+G  QN + +   DL   M       N VT +++ S +    +L    ++   A
Sbjct: 71  SWNTMITGFAQNQQMDKARDLFLIMPTK----NVVTWNAMISGYVECGDLDSALKLFEKA 126

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
                 +++   TA+I  Y K G +  A+R+F++   ++L+ W A+I+ Y  +  A   V
Sbjct: 127 PF----KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGV 182

Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACA 286
            LF  M+  GIQP+  T ++ L  C+
Sbjct: 183 KLFRTMVGFGIQPNSSTLSSALLGCS 208



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M ++++V+WN+MIAGY +    E+   LFR M+   + +P+  T+ S L  C + S +  
Sbjct: 157 MPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGI-QPNSSTLSSALLGCSELSALQL 215

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V +S +  D     +LI MY KCG L+    L  ++  +D V+++A+ISGY  
Sbjct: 216 GRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQ 275

Query: 121 HGFVEKAMDLFQVMKRPGLST-WNAVISGLVQNNRHEAVLDL 161
           HG  +KA+ LF  M   G+   W   ++ L+  N H    DL
Sbjct: 276 HGEGKKALGLFDEMIEKGMKPDWITFVAVLMACN-HAGFTDL 316



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           + +RD+V+WN+MI+GY+Q G  ++   LF EM+    ++PD +T V+VL AC  +     
Sbjct: 258 VPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG-MKPDWITFVAVLMACNHAGFTDL 316

Query: 61  GMEVHNFVIESH---IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
           G++  + + + +    K D + C  ++ +  + G L  A  L+++M  K   + +  ++ 
Sbjct: 317 GVKYFHSMAKDYGLVAKPDHYTC--MVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLG 374

Query: 117 GYMVHGFVEKA 127
              +H   E A
Sbjct: 375 ACRIHKNTEMA 385


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 249/444 (56%), Gaps = 10/444 (2%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SWNSMI+ Y   G  +    L  +M    ++  + V        CG S     
Sbjct: 136 MPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVV-------CGLSK--AG 186

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
            ME+ + V E     +    N++I  Y + G +  A+++  +M +K  VS++A+ISGY  
Sbjct: 187 NMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYAT 246

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISS 179
           +G ++ A ++F  M    + +WNA+ISG V N+  +  L +   M  +G  RP+  T+ S
Sbjct: 247 NGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLIS 306

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           I S  +H  +L+ GK I+ Y  KN+   +I +  A+ID +AK G +  A+ VF     R 
Sbjct: 307 ILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRC 366

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I WT ++S  A +G   +A++LF++M   G +PD V F AVLSAC H GLV++   +F+
Sbjct: 367 IITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFD 426

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M  ++GI+P +EHY CMV +L RA ++ EA  F ++M +KP+A +W  LL+   I G+ 
Sbjct: 427 QMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNG 486

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           +L K V + + + EP N     +++NL +  GRW++    R  M++  + K+PG S I+ 
Sbjct: 487 DLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQV 546

Query: 420 SGGLQSFVAKDTSGDKSEQIYLIL 443
              +  F+AKDT   + ++IY  L
Sbjct: 547 GNRVHEFLAKDTRHVQRKEIYRAL 570



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 193/425 (45%), Gaps = 65/425 (15%)

Query: 22  YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81
           Y   KAL  E         +  T   +L+    S  +  G  +H  +++      +++ N
Sbjct: 62  YSRMKALMVE--------ANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQN 113

Query: 82  ALIGMYAKCG-SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
           +L+G YA C  +L  A  + +EM ++D +S++++IS YM  G ++ A+ L   M    + 
Sbjct: 114 SLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIV 173

Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
           TWN+V+ GL +    E    +  +M       N V+ +S+ S +    +++  + I  Y 
Sbjct: 174 TWNSVVCGLSKAGNMELAHSVFEQMPLR----NEVSWNSMISGYVRIGDVRAAQSIF-YQ 228

Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
           +    ++ +   TA+I  YA  G L  A+ +F+    ++++ W A+IS Y  + +  +A+
Sbjct: 229 MP---EKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQAL 285

Query: 261 SLFNEMLNNG-IQPDPVTFTAVLSACAH-------------------------------- 287
            +F+ ML NG  +PD  T  ++LSACAH                                
Sbjct: 286 CVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDM 345

Query: 288 ---SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV---KP 341
               G V+ A ++F+ MS +  I      +  MV  L+   +  EA     KM +   KP
Sbjct: 346 FAKCGDVENAKEVFHHMSKRCIIT-----WTTMVSGLAVNGKCREAINLFDKMCLEGTKP 400

Query: 342 SAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADR 398
              ++ A+L   +  G VE GK V D +   F I+P    +Y  M +L  +AG+ +EA R
Sbjct: 401 DDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPR-IEHYGCMVDLLGRAGKLEEAVR 459

Query: 399 VREQM 403
              +M
Sbjct: 460 FTARM 464



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 14/254 (5%)

Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
           H+  L +   M+A  V  N+ T + +   F     L+ G+ IHG  +K  +  +++V  +
Sbjct: 55  HKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNS 114

Query: 215 IIDTYAKTG-FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
           ++  YA     L  A RVF+    R +I W ++ISAY   G+   A+ L ++M    I  
Sbjct: 115 LLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI-- 172

Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
             VT+ +V+   + +G ++ A  +F  M  +  +      +  M+    R   +  A   
Sbjct: 173 --VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVS-----WNSMISGYVRIGDVRAAQSI 225

Query: 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393
             +MP K +   W A++ G + +GD++  + + +H+     +N  ++  M + Y     +
Sbjct: 226 FYQMPEK-TVVSWTAMISGYATNGDLKSAENIFNHM---PVKNVVSWNAMISGYVHNHEF 281

Query: 394 DEADRVREQMKESG 407
           D+A  V   M  +G
Sbjct: 282 DQALCVFHHMLING 295


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 165/471 (35%), Positives = 246/471 (52%), Gaps = 39/471 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDIVSWNS++A + Q         ++ +M +  V+ PD +T+VS+     +  + + 
Sbjct: 301 MKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV-PDLLTLVSLASVAAELGNFLS 359

Query: 61  GMEVHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
              +H FV        D+ + NA+I MYAK G                            
Sbjct: 360 SRSIHGFVTRRCWFLHDIALGNAIIDMYAKLG---------------------------- 391

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTIS 178
              F++ A  +F+ +    + +WN++I+G  QN      +D+   M+  SG  PN  T  
Sbjct: 392 ---FIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWV 448

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           SI +  S    LK G + HG  +KN    +I+V+T ++D Y K G L  A  +F     +
Sbjct: 449 SILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQ 508

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           S + W AIIS +  HG   KAV LF EM + G++PD +TF ++LSAC+HSGLVD+    F
Sbjct: 509 SSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCF 568

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
             M   YGI+PS++HY CMV +  RA  + +A  FV  MPV+P   VWGALL    I  +
Sbjct: 569 QLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHEN 628

Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
           VEL + V DHL ++E EN G Y++++N+Y++ G W+  D VR   ++ GL K PG S IE
Sbjct: 629 VELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIE 688

Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
               +  F   + +  K E+IY  L  L   M+  GYV     +L +VE++
Sbjct: 689 VDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDD 739



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 205/445 (46%), Gaps = 79/445 (17%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M  RDI +WN+MI+G+   G   E   +F EM    V   D VT+ S+L  C Q  DI+ 
Sbjct: 200 MMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV-SMDSVTISSLLPICVQLDDIIS 258

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ +H + I+  ++ DL++CNALI MYAK G L  A  + ++M  +D VS          
Sbjct: 259 GVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVS---------- 308

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                                WN++++   QN +    L +  +M + GV P+ +T+ S+
Sbjct: 309 ---------------------WNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSL 347

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S+ +   N    + IHG+  +   +  +I +  AIID YAK GF+  A++VF+    + 
Sbjct: 348 ASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKD 407

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           +I W ++I+ Y+ +G A++A+ +++ M   +G  P+  T+ ++L+A +  G + +     
Sbjct: 408 VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAH 467

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-------------------- 338
             +   + +   +    C+V +  +  ++++A     ++P                    
Sbjct: 468 GQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYG 526

Query: 339 --------------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG------ 378
                         VKP    + +LL   S SG V+ G++     F++  E  G      
Sbjct: 527 LKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWC----FQLMQETYGIRPSLK 582

Query: 379 NYIIMANLYSQAGRWDEADRVREQM 403
           +Y  M +L+ +AG  ++A    + M
Sbjct: 583 HYGCMVDLFGRAGHLEKAFNFVKNM 607



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 199/421 (47%), Gaps = 59/421 (14%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           +  +D+ +WNSMI+ Y++ G +      F E L++  L+ D  T   V++ACG   D   
Sbjct: 101 IQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD--- 157

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G +VH  V++   + D++I  + I  Y++ G +  A  L D M  +D  +++A+ISG+ +
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G V +A+++F                                EM+   V  ++VTISS+
Sbjct: 218 NGKVAEALEVFD-------------------------------EMRFKSVSMDSVTISSL 246

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
             +     ++  G  IH YA+K   + +++V  A+I+ YAK G L  A+ +F++ K R +
Sbjct: 247 LPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDI 306

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
           + W ++++A+  +     A+ ++N+M + G+ PD +T  ++ S  A           H  
Sbjct: 307 VSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGF 366

Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
           +  + W + +   G       ++ YA  +G +  AR++ E       +PVK     W +L
Sbjct: 367 VTRRCWFLHDIALG----NAIIDMYA-KLGFIDSARKVFEG------LPVKDVIS-WNSL 414

Query: 350 LYGASISG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           + G S +G  +  +  +     +     N G ++ +   +SQ G   +  +   Q+ ++ 
Sbjct: 415 ITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF 474

Query: 408 L 408
           L
Sbjct: 475 L 475



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 33/223 (14%)

Query: 63  EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           ++H  ++ S     +++   LI  YA  G + +AR   D++  KD  +++++IS Y   G
Sbjct: 61  QLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIG 120

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
               A+D F           N  +S     + H     ++R   A G             
Sbjct: 121 HFHAAVDCF-----------NEFLSTSFLQSDHYTFPPVIR---ACG------------- 153

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
                 NL  G+++H   +K  ++ ++Y+A + I  Y++ GF+  A  +FD    R +  
Sbjct: 154 ------NLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGT 207

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
           W A+IS +  +G  ++A+ +F+EM    +  D VT +++L  C
Sbjct: 208 WNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC 250



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
           +F + + +   K++H   V +   ++I+++  +I+ YA  G +  A+  FD+ + + +  
Sbjct: 49  IFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYT 108

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
           W ++ISAYA  G    AV  FNE L+   +Q D  TF  V+ AC   G +D    + + +
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKV-HCL 164

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
             + G +  V   A  +   SR   +S A      M ++     W A++ G  ++G V
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIR-DIGTWNAMISGFYLNGKV 221


>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 249/443 (56%), Gaps = 5/443 (1%)

Query: 6   IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ--SSDIVFGME 63
           IVSW S I   ++ G   E    F +M  + V  P+ +T +++L  CG   S     G  
Sbjct: 25  IVSWTSRITLLTRNGRLAEAAKEFSDMRLAGV-EPNHITFIALLSGCGDFSSGSEALGDL 83

Query: 64  VHNFVIE-SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
           +H +  +  H +  + +  A++GMY+K   +  AR + D M DK+ V+++ +I GYM +G
Sbjct: 84  LHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNG 143

Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
            V+ A+ +F  M    L +W A+I+G V+   HE  L   REMQ SGV+P+ V I +  +
Sbjct: 144 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALN 203

Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
             ++   L  G  +H Y +   +  N+ V+ ++ID Y + G +  A+ VFD+ + R+++ 
Sbjct: 204 ACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVS 263

Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
           W ++I  +AA+G+A +++  F +M   G +PD VTFT  L+AC+H GLV++    F  M 
Sbjct: 264 WNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMK 323

Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-DVEL 361
             + I P +EHY C+V + SRA R+ EA + V  MP+KP+  V G+LL      G +  L
Sbjct: 324 RDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVL 383

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
            + +  HL ++  +   NY+I++N+Y+  G+W+ A ++R +MK  GL K PG S IE   
Sbjct: 384 AERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDD 443

Query: 422 GLQSFVAKDTSGDKSEQIYLILE 444
               F+A D++  ++  I  +LE
Sbjct: 444 CTHVFMAGDSAHVETADIREVLE 466



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 34/259 (13%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD++SW +MI G+ + GF+EE  A FREM  S V +PD V +++ L AC     + F
Sbjct: 155 MPERDLISWTAMINGFVKKGFHEEALAWFREMQISGV-KPDYVAIIAALNACTNLGALSF 213

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G+ VH +V+    K ++ + N+LI +Y +CG +++AR + D+M  +  VS++++I G+  
Sbjct: 214 GLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAA 273

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           +G                              N HE+++   R+MQ  G +P+AVT +  
Sbjct: 274 NG------------------------------NAHESLV-YFRKMQEEGFKPDAVTFTGA 302

Query: 181 FSLFSHFSNLKGG-KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR- 238
            +  SH   ++ G +        +R    I     ++D Y++ G L  A +V      + 
Sbjct: 303 LTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKP 362

Query: 239 SLIIWTAIISAYAAHGDAS 257
           + ++  ++++A   HG+ +
Sbjct: 363 NEVVIGSLLAACRTHGNNT 381



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKAWDI 297
           +++ WT+ I+    +G  ++A   F++M   G++P+ +TF A+LS C   S   +   D+
Sbjct: 24  TIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDL 83

Query: 298 FNAMSGQYG-IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
            +  + + G  +  V     ++G+ S+  R+ +A      M  K S   W  ++ G   +
Sbjct: 84  LHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSV-TWNTMIDGYMRN 142

Query: 357 GDVELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
           G V+        +F+  PE +  ++  M N + + G  +EA     +M+ SG+
Sbjct: 143 GQVDNAV----KMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGV 191


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 247/463 (53%), Gaps = 55/463 (11%)

Query: 5   DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
           D+V+W+S+I+GY+Q GF  E   +FR+M      RP+ VT++S+L AC     ++ G E 
Sbjct: 139 DVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRC-RPNVVTLMSLLSACASVGALLHGKET 197

Query: 65  HNFVIESHIKM-------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
           H + ++  +K        DL + NALI MYAKC SL+ ARA+ DE+  KD          
Sbjct: 198 HCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDR--------- 248

Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA--SGVRPNAV 175
                                + TW  +I G  Q+      L L  EM    + + PN  
Sbjct: 249 --------------------DVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDF 288

Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVK-NRYDRNI-YVATAIIDTYAKTGFLHGAQRVFD 233
           TIS +    +  + LK GK+IH Y ++ +R D ++ +VA  +ID Y+K+G +  AQ VFD
Sbjct: 289 TISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFD 348

Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
               R+ + WT++++ Y  HG A              +  D +TF  VL AC+HSG+VD+
Sbjct: 349 SMSKRNAVSWTSLLTGYGMHGAA--------------LVLDGITFLVVLYACSHSGMVDR 394

Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
             D+F  MS  + + P VEHYACM  +  RA R+ EAT  ++ M ++P+  VW ALL   
Sbjct: 395 GIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSAC 454

Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
               + EL +F    L E++ +N G Y +++N+Y+ A RW +  R+R  MK +G+ K PG
Sbjct: 455 RTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPG 514

Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
            SW++   G+++F   D +  +S++IY  L  L+  ++  GYV
Sbjct: 515 WSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYV 557



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 204/437 (46%), Gaps = 62/437 (14%)

Query: 7   VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
           VSWNS+++ YS      +   LFREM     + PD V VV++L   G             
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGF------------ 71

Query: 67  FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
                   +  ++ NAL+ MYAKCG ++ A  + + M  KD V+++A+++GY  +G  E 
Sbjct: 72  --------LGFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 127 AMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
           A+ LF  M+   +     TW++VISG  Q       +D+ R+M     RPN VT+ S+ S
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 183 LFSHFSNLKGGKEIHGYAVK-------NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
             +    L  GKE H Y+VK       N    ++ V  A+ID YAK   L  A+ +FD  
Sbjct: 184 ACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 236 --KGRSLIIWTAIISAYAAHGDASKAVSLFNEM--LNNGIQPDPVTFTAVLSACAHSGLV 291
             K R ++ WT +I  YA HGDA+ A+ LF+EM  ++N I P+  T + VL ACA    +
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 292 DKAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
                I   +  +  I   V   A C++ + S++  +  A      M  K +A  W +LL
Sbjct: 304 KFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLL 362

Query: 351 YGASISGDVELGK--------FVCDHL----------------FEIEPENTGNYIIMANL 386
            G  + G   +          + C H                 F ++P    +Y  MA+L
Sbjct: 363 TGYGMHGAALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDP-GVEHYACMADL 421

Query: 387 YSQAGRWDEADRVREQM 403
           + +AGR  EA R+   M
Sbjct: 422 FGRAGRLCEATRLINDM 438


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 242/444 (54%), Gaps = 1/444 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M+ RD+VSW ++I GY++GG  +E   +F  M+ +  + P+ VT+V+   A GQ   +  
Sbjct: 192 MADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL 251

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  VH  ++ES  +M + + NAL+ M+ KCG +  A+ + D M  KD  S+++++S Y  
Sbjct: 252 GRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAK 311

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
            G +E A  LF+ +    + +W+ +++     N  +  + +  +M A+GV P   T+ S+
Sbjct: 312 CGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSV 371

Query: 181 FSLFSHFSNLKGGKEIHG-YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
            S  +   +L  G  ++  Y V ++ +    ++ A ID +AK G +  A R+F   + ++
Sbjct: 372 LSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKN 431

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           ++ W  +I A+  HG   +A+ LF E   NGI PD  T+  VLSAC+H GLV +    F 
Sbjct: 432 VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFK 491

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
            M   YGI+P  EHYACM+ +L +   + EA E    MPV      WGALL    + G+V
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           E+GK   D L  ++P ++G Y++M+ +Y+   +W +   +R  M++  + K PG S IE 
Sbjct: 552 EIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEV 611

Query: 420 SGGLQSFVAKDTSGDKSEQIYLIL 443
            G    F+  D S   SE IY  L
Sbjct: 612 DGKCHEFLVADVSHVHSEDIYAAL 635



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 40/317 (12%)

Query: 11  SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70
           +M+ G+ + G       LFR +L    L  D  T+V  ++A   SS     +    F   
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDR-LAVDARTIVFAVKAAATSSSPTEAIHCVAFK-R 159

Query: 71  SHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDL 130
             I   +   NAL+ MY     L  AR L DEM+D+D VS++ +I GY   G  ++A  +
Sbjct: 160 GFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRV 219

Query: 131 FQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
           F                               R + A  V PN VT+ +  S       L
Sbjct: 220 F------------------------------CRMVVAESVWPNEVTLVAAASAAGQMGLL 249

Query: 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250
             G+ +H   V++    ++ +  A++D + K G +  A+ VFD    + +  WT+++SAY
Sbjct: 250 GLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAY 309

Query: 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
           A  GD   A  LF E+ N  +    V+++ +++A +H+ + D+A  IFN M    G++P 
Sbjct: 310 AKCGDLENAAKLFKEIPNRNV----VSWSCMVAAYSHANMPDEAIRIFNDMIAA-GVEPI 364

Query: 311 VEHYACMVGVLSRARRI 327
               A +V VLS   ++
Sbjct: 365 ---DATLVSVLSACAQL 378


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 238/454 (52%), Gaps = 32/454 (7%)

Query: 2   SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
           S ++ ++W++MI GY+Q G  ++   LF  M  S + RP   T V V+ AC        G
Sbjct: 271 SDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGI-RPSEFTFVGVINACSDLGAAWEG 329

Query: 62  MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
            +VH+++++   +  +++  AL+ MYAKC S+  AR                        
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDAR------------------------ 365

Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
               K  D  Q    P +  W ++I G VQN  +E  L L   M+  G+ PN +T++S+ 
Sbjct: 366 ----KGFDYLQ---EPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVL 418

Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
              S  + L+ GK+IH   VK  +   + + +A+   YAK G L     VF R   R +I
Sbjct: 419 KACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478

Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
            W A+IS  + +G   +A+ LF EM   G +PD VTF  +LSAC+H GLV++ W  F  M
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538

Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
             ++G+ P VEHYACMV +LSRA ++ EA EF     +     +W  +L       + EL
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYEL 598

Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
           G +  + L E+  + +  Y++++++YS  GRW++ +RVR  MK  G++K PG SWIE   
Sbjct: 599 GAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKS 658

Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
           G+  FV KD    +   I++ L +L   M++EGY
Sbjct: 659 GVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGY 692



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 183/389 (47%), Gaps = 38/389 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R+ VSW +MI+GY+      E   LFR M        + V   SVL A      +  
Sbjct: 169 MPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFV-FTSVLSALTLPELVNN 227

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G ++H   +++ +   + + NAL+ MYAKCGSLD A    +  SDK+ +           
Sbjct: 228 GKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSI----------- 276

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
                               TW+A+I+G  Q+   +  L L   M  SG+RP+  T   +
Sbjct: 277 --------------------TWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGV 316

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
            +  S       GK++H Y +K  ++  IYV TA++D YAK   +  A++ FD  +   +
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           ++WT++I  Y  +G+   A+SL+  M   GI P+ +T  +VL AC+    +++   I +A
Sbjct: 377 VLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQI-HA 435

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
            + +YG    V   + +  + ++   + + T    +MP +     W A++ G S +G   
Sbjct: 436 RTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS-WNAMISGLSQNG--- 491

Query: 361 LGKFVCDHLFEIEPENTG-NYIIMANLYS 388
            GK   +   E++ E T  +Y+   N+ S
Sbjct: 492 CGKEALELFEEMQLEGTKPDYVTFVNILS 520



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 36/362 (9%)

Query: 1   MSKRDIVSWNSMIAGYSQGGF--YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
           +  +D+VSWN +I GYSQ G         LF+ M  +    P+  T   V  A     D 
Sbjct: 66  IQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM-RAENTAPNAHTFAGVFTAASTLVDA 124

Query: 59  VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
             G   H   I+     D+++ ++L+ MY K G    AR + D M +++ VS++ +ISGY
Sbjct: 125 AGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGY 184

Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
                  +A+ LF++M+R                             +  G   N    +
Sbjct: 185 ASQKLAAEALGLFRLMRR-----------------------------EEEG--ENEFVFT 213

Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
           S+ S  +    +  GK+IH  AVKN     + V  A++  YAK G L  A + F+    +
Sbjct: 214 SVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDK 273

Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
           + I W+A+I+ YA  GD+ KA+ LF+ M  +GI+P   TF  V++AC+  G   +   + 
Sbjct: 274 NSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVH 333

Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
           + +  + G +  +     +V + ++   I +A +    +  +P   +W +++ G   +G+
Sbjct: 334 DYLL-KLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ-EPDIVLWTSMIGGYVQNGE 391

Query: 359 VE 360
            E
Sbjct: 392 NE 393



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 35/350 (10%)

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H  +I+S     ++I N+L+ +YAKC  L  A+ + + + +KD VS++ II+GY  
Sbjct: 25  GKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
           HG              P  S+                V++L + M+A    PNA T + +
Sbjct: 84  HG--------------PSGSS---------------HVMELFQRMRAENTAPNAHTFAGV 114

Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
           F+  S   +  GG+  H  A+K    R+++V +++++ Y K G    A++VFD    R+ 
Sbjct: 115 FTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNS 174

Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
           + W  +IS YA+   A++A+ LF  M       +   FT+VLSA     LV+    I + 
Sbjct: 175 VSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQI-HC 233

Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
           ++ + G+   V     +V + ++   + +A +       K S   W A++ G + SGD +
Sbjct: 234 IAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSI-TWSAMITGYAQSGDSD 292

Query: 361 --LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
             L  F   HL  I P     ++ + N  S  G   E  +V + + + G 
Sbjct: 293 KALKLFSSMHLSGIRPSEF-TFVGVINACSDLGAAWEGKQVHDYLLKLGF 341



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 21/179 (11%)

Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
           ++H  +L+ GK +H   +K+     +Y+A ++++ YAK   L  A+ VF+R + + ++ W
Sbjct: 16  YTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSW 74

Query: 244 TAIISAYAAHGD--ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
             II+ Y+ HG   +S  + LF  M      P+  TF  V +A   S LVD A       
Sbjct: 75  NCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAA--STLVDAA------- 125

Query: 302 SGQYGIQPSVEHYAC--------MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
            G+     +++  +C        ++ +  +A    EA +    MP + S   W  ++ G
Sbjct: 126 GGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVS-WATMISG 183



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC 52
           M  RD++SWN+MI+G SQ G  +E   LF EM      +PD VT V++L AC
Sbjct: 472 MPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGT-KPDYVTFVNILSAC 522


>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
          Length = 748

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/426 (36%), Positives = 229/426 (53%), Gaps = 4/426 (0%)

Query: 27  ALFREMLNSPVLRPDGVTVVSVLQA-CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85
           ALF  ML      P+      VL+A C     +V    +H    +       +I  +L+ 
Sbjct: 318 ALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLV--RSIHCHACKDGFYGHDFIRTSLLD 375

Query: 86  MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAV 145
            Y++ G +  AR L D ++D++ VS++A++SGY   G V  A+ LF+ M +  +  WNA+
Sbjct: 376 GYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAI 435

Query: 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
           I+G  QN      + + R M   G RPN  T+S + S   H   LK GK IHGYA ++  
Sbjct: 436 IAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCV 495

Query: 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265
                V   +ID Y K G L  A+ +FD F  R L  W ++I+  A HG +  A+++FN 
Sbjct: 496 GFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNS 555

Query: 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
           M N G+QPD VTF  +L+AC H G VD+    F  M  ++GI+P +EHY C+V +L RA 
Sbjct: 556 MRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAG 615

Query: 326 RISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385
           R  +A  F++ M V+P   +WG+LL    I   +EL +    +L ++ P N    +++AN
Sbjct: 616 RFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVMLAN 675

Query: 386 LYSQAGRWDEADRVREQMKESGLA-KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444
           LYS+ G W+E  +VR+ MKE     K+PG SWIE     + F + D    +SE IY  L+
Sbjct: 676 LYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRFYSGDDGHPESEDIYDTLD 735

Query: 445 RLLGLM 450
           +L   M
Sbjct: 736 KLATTM 741



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +RD+ +WN++IAG +Q G + E   +FR M++    RP+G TV  +L ACG    +  
Sbjct: 424 MPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEG-FRPNGTTVSCLLSACGHLGMLKI 482

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
           G  +H +   S +     + N LI MY KCG+L  A+ + D  SD+   +++++I+   +
Sbjct: 483 GKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLAL 542

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160
           HG  E A+ +F  M+  G+        GL+    H   +D
Sbjct: 543 HGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVD 582



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 93  LDYARALLDEMSDKDEVSYSAIISGYMVHGFV--EKAMD---LFQVMKRPGLSTWNAVIS 147
           L YAR L D     +   YSA++S Y        E A D   LF  M R G    N  + 
Sbjct: 277 LPYARRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVY 336

Query: 148 GLVQNNRHEAVLDLVREMQA----SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
            LV        + LVR +       G   +    +S+   +S +  +   +++       
Sbjct: 337 PLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKL----FDG 392

Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
             DRN+   TA++  YA+ G +  A  +F+R   R +  W AII+    +G   +AV +F
Sbjct: 393 LTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIF 452

Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLV 291
             M++ G +P+  T + +LSAC H G++
Sbjct: 453 RRMVDEGFRPNGTTVSCLLSACGHLGML 480


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 265/470 (56%), Gaps = 38/470 (8%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYE-ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
           M + +++SW ++I  Y+Q G  + E   LF +M++  + RP+  +  SVL+ACG  SD  
Sbjct: 115 MPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI-RPNHFSFSSVLKACGNLSDPY 173

Query: 60  FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
            G +V+++ ++  I     + N+LI MYA+ G ++ AR                      
Sbjct: 174 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR---------------------- 211

Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
                 KA   F ++    L ++NA++ G  +N + E    L  E+  +G+  +A T +S
Sbjct: 212 ------KA---FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 262

Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
           + S  +    +  G++IHG  +K  Y  N  +  A+I  Y++ G +  A +VF+  + R+
Sbjct: 263 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRN 322

Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
           +I WT++I+ +A HG A++A+ +F++ML  G +P+ +T+ AVLSAC+H G++ +    FN
Sbjct: 323 VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 382

Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
           +M  ++GI P +EHYACMV +L R+  + EA EF++ MP+   A VW  LL    + G+ 
Sbjct: 383 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 442

Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
           ELG+   + + E EP++   YI+++NL++ AG+W +  ++R+ MKE  L K  G SWIE 
Sbjct: 443 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 502

Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
              +  F   +TS  ++ QIY  L++L   ++E GY+     +L ++EEE
Sbjct: 503 ENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEE 552



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 177/362 (48%), Gaps = 40/362 (11%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M +R++V+W  MI  ++Q G   +   LF +M  S  + PD  T  SVL AC +   +  
Sbjct: 11  MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTELGLLAL 69

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAIISG 117
           G ++H+ VI   + +D+ +  +L+ MYAKC   GS+D +R + ++M + + +S++AII+ 
Sbjct: 70  GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129

Query: 118 YMVHGFVEK-AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
           Y   G  +K A++LF  M           ISG                     +RPN  +
Sbjct: 130 YAQSGECDKEAIELFCKM-----------ISG--------------------HIRPNHFS 158

Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
            SS+     + S+   G++++ YAVK        V  ++I  YA++G +  A++ FD   
Sbjct: 159 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILF 218

Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
            ++L+ + AI+  YA +  + +A  LFNE+ + GI     TF ++LS  A  G + K   
Sbjct: 219 EKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ 278

Query: 297 IF-NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
           I    + G Y     + +   ++ + SR   I  A +  ++M  + +   W +++ G + 
Sbjct: 279 IHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAK 335

Query: 356 SG 357
            G
Sbjct: 336 HG 337



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 4/165 (2%)

Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
           A  +F  M    L TW  +I+   Q       +DL  +M+ SG  P+  T SS+ S  + 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT---GFLHGAQRVFDRFKGRSLIIW 243
              L  GK++H   ++     ++ V  +++D YAK    G +  +++VF++    +++ W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 244 TAIISAYAAHGDASK-AVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           TAII+AYA  G+  K A+ LF +M++  I+P+  +F++VL AC +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 168



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A +VFD+   R+L+ WT +I+ +A  G A  A+ LF +M  +G  PD  T+++VLSAC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 288 SGLV 291
            GL+
Sbjct: 64  LGLL 67


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 258/487 (52%), Gaps = 29/487 (5%)

Query: 1   MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
           M + + +SWN +++GY Q G   E + +F +M    V+    +    V +   + ++++F
Sbjct: 20  MPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLF 79

Query: 61  GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
                  V+        W    ++G   + G +D AR L D M  KD V+ + +I G   
Sbjct: 80  WRMPERNVVS-------W--TVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCS 130

Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV-------------LDLVREMQA 167
            G + +A ++F  M +  +  W ++ISG   +     +             L L   MQ 
Sbjct: 131 EGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQR 190

Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
            GVRP+  ++ S+ S+    ++L  G+++H   V++++D +IYV++ +I  Y K G L  
Sbjct: 191 EGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVT 250

Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
           A+RVFDRF  + +++W +II+ YA HG   KA+ +F++M ++ I PD +TF  VLSAC++
Sbjct: 251 AKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSY 310

Query: 288 SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWG 347
           +G V +  +IF +M  +Y + P  EHYACMV +L RA +++EA   +  MPV+  A VWG
Sbjct: 311 TGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 370

Query: 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407
           ALL       +++L +     L ++EP N G YI+++NLYS   RW +   +R+ M+   
Sbjct: 371 ALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKN 430

Query: 408 LAKIPGRSWIECSGGLQSFV-AKDTSGDKSEQIYLILERLLGLMREEGY------VLLDE 460
           L K PG SWIE    +  F     TS  + E I   L +L  L+RE GY      V+ D 
Sbjct: 431 LRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDV 490

Query: 461 VEEESAY 467
            EEE  +
Sbjct: 491 DEEEKVH 497



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 149/358 (41%), Gaps = 60/358 (16%)

Query: 96  ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRH 155
           AR L D+M + + +S++ ++SGY+ +G + +A  +F  M    + +W A+I G VQ    
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATA 214
           E    L   M    V    V +  +         ++ G+      + +    +++  +T 
Sbjct: 73  EEAELLFWRMPERNVVSWTVMLGGL---------IEDGRVDEARQLFDMMPVKDVVASTN 123

Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA-------------YAAHGDASKAVS 261
           +ID     G L  A+ +FD    R+++ WT++IS              Y   G   +A++
Sbjct: 124 MIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALA 183

Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM-SGQYGIQPSVEHYACMV-- 318
           LF+ M   G++P   +  +VLS C     +D    + + +   Q+ I   V      +  
Sbjct: 184 LFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYI 243

Query: 319 --GVLSRARRI-------------------------SEATEFVSKM---PVKPSAKVWGA 348
             G L  A+R+                          +A E    M    + P    +  
Sbjct: 244 KCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIG 303

Query: 349 LLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
           +L   S +G V+ G  + + +   ++++P+ T +Y  M +L  +AG+ +EA  + E M
Sbjct: 304 VLSACSYTGKVKEGLEIFESMKSKYQVDPK-TEHYACMVDLLGRAGKLNEAMNLIENM 360


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,345,374,514
Number of Sequences: 23463169
Number of extensions: 299203534
Number of successful extensions: 908419
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9792
Number of HSP's successfully gapped in prelim test: 2815
Number of HSP's that attempted gapping in prelim test: 722695
Number of HSP's gapped (non-prelim): 64088
length of query: 468
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 322
effective length of database: 8,933,572,693
effective search space: 2876610407146
effective search space used: 2876610407146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)