BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012234
         (468 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396
           +GD E  +  C  L+  EP+NTG  +++++++ Q  R D +
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS 52


>pdb|3S81|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
 pdb|3S81|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
 pdb|3S81|C Chain C, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
 pdb|3S81|D Chain D, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
          Length = 268

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
           +++AR IS     +  +P  PSA+  G L   A+++  +   K +   L  I+PE+ G  
Sbjct: 120 VAKARMISILDATLGDIP--PSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQA 177

Query: 381 IIMANLYS 388
           ++M  +Y+
Sbjct: 178 LVMQAIYT 185


>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From
            The Malaria Parasite Plasmodium Falciparum
 pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From
            The Malaria Parasite Plasmodium Falciparum
 pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From
            The Malaria Parasite Plasmodium Falciparum
 pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From
            The Malaria Parasite Plasmodium Falciparum
          Length = 1193

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 274  DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
            DP +FT +++A  +S L    WD    ++G YG+   +E+   +V + +R
Sbjct: 1023 DP-SFTVIVAALKNSYL----WDTVRGLNGAYGVFADIEYDGSVVFLSAR 1067


>pdb|1VRM|A Chain A, Crystal Structure Of The Apbe Protein (Tm1553) From
           Thermotoga Maritima Msb8 At 1.58 A Resolution
          Length = 325

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
           D    V   N+  N  ++ D  T++ + +ACA + L D A+D
Sbjct: 63  DERSVVKKINDHPNEWVEVDEETYSLIKAACAFAELTDGAFD 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,124,810
Number of Sequences: 62578
Number of extensions: 507013
Number of successful extensions: 1081
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 9
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)