BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012234
(468 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/463 (62%), Positives = 363/463 (78%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+RD+VSWNSMI+GYSQ G +E+CK +++ ML +P+GVTV+SV QACGQSSD++F
Sbjct: 193 MSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIF 252
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+EVH +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG V++AM LF M+ GLSTWNA+ISGL+QNN HE V++ REM G RPN VT+SS+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
++ SNLKGGKEIH +A++N D NIYV T+IID YAK GFL GAQRVFD K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I WTAII+AYA HGD+ A SLF++M G +PD VT TAVLSA AHSG D A IF++
Sbjct: 433 IAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDS 492
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +Y I+P VEHYACMV VLSRA ++S+A EF+SKMP+ P AKVWGALL GAS+ GD+E
Sbjct: 493 MLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLE 552
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR +MK GL KIPG SWIE
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETE 612
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
GL+SF+AKD+S ++S+++Y I+E L+ M ++ Y+ E++E
Sbjct: 613 KGLRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYIRKQELDE 655
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 204/485 (42%), Gaps = 106/485 (21%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQSSDI 58
R+ S+N+++ Y+ Y + +LF + +S RPD +++ VL+A D
Sbjct: 86 RNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDF 145
Query: 59 VFG---MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
G +VH FVI D+++ N +I Y KC +++ AR + DEMS++D VS++++I
Sbjct: 146 WLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMI 205
Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
SGY G E +++ M + S +PN V
Sbjct: 206 SGYSQSGSFEDCKKMYKAM------------------------------LACSDFKPNGV 235
Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
T+ S+F S+L G E+H ++N ++ + A+I YAK G L A+ +FD
Sbjct: 236 TVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEM 295
Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNE----------------MLNN---------- 269
+ + + AIIS Y AHG +A++LF+E M NN
Sbjct: 296 SEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFR 355
Query: 270 -----GIQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
G +P+ VT +++L + +S G A+ I N + S+ +G
Sbjct: 356 EMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLG 415
Query: 320 VLSRARRI-------------------------SEATEFVSKMP---VKPSAKVWGALLY 351
L A+R+ A +M KP A+L
Sbjct: 416 FLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLS 475
Query: 352 GASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
+ SGD ++ + + D + ++IEP +Y M ++ S+AG+ +A +M +
Sbjct: 476 AFAHSGDSDMAQHIFDSMLTKYDIEP-GVEHYACMVSVLSRAGKLSDAMEFISKMPIDPI 534
Query: 409 AKIPG 413
AK+ G
Sbjct: 535 AKVWG 539
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 129/300 (43%), Gaps = 36/300 (12%)
Query: 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
+++H ++ IK D ++ + LI Y + A + DE++ ++ SY+A++ Y
Sbjct: 42 LQLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSR 101
Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
A LF + G S ++ + RP++++IS +
Sbjct: 102 EMYFDAFSLF--LSWIGSSCYS-----------------------SDAARPDSISISCVL 136
Query: 182 SLFSHFSNLKGG---KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
S + G +++HG+ ++ +D +++V +I Y K + A++VFD R
Sbjct: 137 KALSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSER 196
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLN-NGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
++ W ++IS Y+ G ++ ML + +P+ VT +V AC S + ++
Sbjct: 197 DVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEV 256
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
M + IQ + ++G ++ + A +M K S + YGA ISG
Sbjct: 257 HKKMIENH-IQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDS------VTYGAIISG 309
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/469 (36%), Positives = 273/469 (58%), Gaps = 37/469 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++D+VS+N++IAGY+Q G YE+ + REM + L+PD T+ SVL + D++
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKPDSFTLSSVLPIFSEYVDVIK 260
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G E+H +VI I D++I ++L+ MYAK ++ + + + +D +S
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS---------- 310
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
WN++++G VQN R+ L L R+M + V+P AV SS+
Sbjct: 311 ---------------------WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSV 349
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+H + L GK++HGY ++ + NI++A+A++D Y+K G + A+++FDR
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE 409
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ WTAII +A HG +AVSLF EM G++P+ V F AVL+AC+H GLVD+AW FN+
Sbjct: 410 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 469
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ YG+ +EHYA + +L RA ++ EA F+SKM V+P+ VW LL S+ ++E
Sbjct: 470 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLE 529
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + V + +F ++ EN G Y++M N+Y+ GRW E ++R +M++ GL K P SWIE
Sbjct: 530 LAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
FV+ D S ++I L+ ++ M +EGYV +L +V+EE
Sbjct: 590 NKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEE 638
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 188/359 (52%), Gaps = 12/359 (3%)
Query: 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
+++W S+I ++ + + A F EM S PD SVL++C D+ FG VH
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVH 128
Query: 66 NFVIESHIKMDLWICNALIGMYAKC---GSLDYARALLDEMSDKDEVSYSAIISG---YM 119
F++ + DL+ NAL+ MYAK GS + DEM + S + M
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
G ++ +F+VM R + ++N +I+G Q+ +E L +VREM + ++P++ T+SS
Sbjct: 189 PFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
+ +FS + ++ GKEIHGY ++ D ++Y+ ++++D YAK+ + ++RVF R R
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
I W ++++ Y +G ++A+ LF +M+ ++P V F++V+ ACAH + +
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367
Query: 300 -AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
+ G +G + + +V + S+ I A + +M V W A++ G ++ G
Sbjct: 368 YVLRGGFGSNIFIA--SALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHG 423
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 129/332 (38%), Gaps = 72/332 (21%)
Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
S S +IS Y + +A+ LF+ +K P + W +VI + L EM+A
Sbjct: 39 HTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRA 98
Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGF-- 224
SG P+ S+ + +L+ G+ +HG+ V+ D ++Y A+++ YAK G
Sbjct: 99 SGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGS 158
Query: 225 ---------------------------------LHGAQRVFDRFKGRSLIIWTAIISAYA 251
+ +RVF+ + ++ + II+ YA
Sbjct: 159 KISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYA 218
Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
G A+ + EM ++PD T ++VL + V K +I + + GI V
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVI-RKGIDSDV 277
Query: 312 EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371
+ +V + +++ RI ++ S++ + W +L+ G
Sbjct: 278 YIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS-WNSLVAG------------------- 317
Query: 372 IEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
Y Q GR++EA R+ QM
Sbjct: 318 ---------------YVQNGRYNEALRLFRQM 334
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 341 bits (874), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 272/474 (57%), Gaps = 39/474 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS R +VS+ SMIAGY++ G E LF EM + PD TV +VL C + +
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYRLLDE 415
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G VH ++ E+ + D+++ NAL+ MYAKCGS+ A + EM KD +S++ II GY
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+ + +A+ LF ++ ++ P+ T++ +
Sbjct: 476 NCYANEALSLFNLL------------------------------LEEKRFSPDERTVACV 505
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ S G+EIHGY ++N Y + +VA +++D YAK G L A +FD + L
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDL 565
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ WT +I+ Y HG +A++LFN+M GI+ D ++F ++L AC+HSGLVD+ W FN
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 625
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M + I+P+VEHYAC+V +L+R + +A F+ MP+ P A +WGALL G I DV+
Sbjct: 626 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 685
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + V + +FE+EPENTG Y++MAN+Y++A +W++ R+R+++ + GL K PG SWIE
Sbjct: 686 LAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 745
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL--------DEVEEESA 466
G + FVA D+S ++E I L ++ M EEGY L +E+E+E A
Sbjct: 746 GRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEA 799
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 155/298 (52%), Gaps = 33/298 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M++RD++SWNS+I GY G E+ ++F +ML S + D T+VSV C S I
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISL 314
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G VH+ +++ + CN L+ MY+KCG LD A+A+ EMSD+ VSY+++I+GY
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G +A+ LF+ EM+ G+ P+ T++++
Sbjct: 375 EGLAGEAVKLFE-------------------------------EMEEEGISPDVYTVTAV 403
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + + L GK +H + +N +I+V+ A++D YAK G + A+ VF + + +
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDI 297
I W II Y+ + A++A+SLFN +L PD T VL ACA DK +I
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 32/285 (11%)
Query: 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
WN ++ ++ G + LF++M++S V D T V ++ + G ++H F+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 221
Query: 69 IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
++S + N+L+ Y K +D AR + DEM+++D +S+++II+GY+ +G EK +
Sbjct: 222 LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGL 281
Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
+F +M SG+ + TI S+F+ +
Sbjct: 282 SVFV-------------------------------QMLVSGIEIDLATIVSVFAGCADSR 310
Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
+ G+ +H VK + R ++D Y+K G L A+ VF RS++ +T++I+
Sbjct: 311 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 370
Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
YA G A +AV LF EM GI PD T TAVL+ CA L+D+
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 135/288 (46%), Gaps = 34/288 (11%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
R + N+ + + + G E L + S D T+ SVLQ C S + G E
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKL---LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
V NF+ + +D + + L MY CG L A + DE+
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK------------------- 156
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
+EKA+ WN +++ L ++ + L ++M +SGV ++ T S +
Sbjct: 157 IEKAL------------FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKS 204
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
FS ++ GG+++HG+ +K+ + V +++ Y K + A++VFD R +I W
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISW 264
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
+II+ Y ++G A K +S+F +ML +GI+ D T +V + CA S L+
Sbjct: 265 NSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 312
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/459 (37%), Positives = 268/459 (58%), Gaps = 1/459 (0%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
RD+VSWN +I GY + G E+ +++ ++ S ++PD VT++ ++ +C D+ G E
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYK-LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKE 278
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+ +V E+ ++M + + NAL+ M++KCG + AR + D + + VS++ +ISGY G
Sbjct: 279 FYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGL 338
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
++ + LF M+ + WNA+I G VQ R + L L +EMQ S +P+ +T+ S
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
S L G IH Y K N+ + T+++D YAK G + A VF + R+ + +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY 458
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
TAII A HGDAS A+S FNEM++ GI PD +TF +LSAC H G++ D F+ M
Sbjct: 459 TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS 518
Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
++ + P ++HY+ MV +L RA + EA + MP++ A VWGALL+G + G+VELG+
Sbjct: 519 RFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGE 578
Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
L E++P ++G Y+++ +Y +A W++A R R M E G+ KIPG S IE +G +
Sbjct: 579 KAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 638
Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
F+ +D S +SE+IY L L MR VL E E
Sbjct: 639 CEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLFSEYE 677
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 122/484 (25%), Positives = 205/484 (42%), Gaps = 101/484 (20%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLQACGQSSDIVFGM 62
+I SWN I G+S+ +E L+++ML RPD T + + C G
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
+ V++ +++ + NA I M+A CG ++ AR + DE +D VS++ +I+GY G
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
EKA+ ++++ M++ GV+P+ VT+ + S
Sbjct: 237 EAEKAIYVYKL-------------------------------MESEGVKPDDVTMIGLVS 265
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
S +L GKE + Y +N I + A++D ++K G +H A+R+FD + R+++
Sbjct: 266 SCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVS 325
Query: 243 WTAIISAYAAHG--DASK-----------------------------AVSLFNEMLNNGI 271
WT +IS YA G D S+ A++LF EM +
Sbjct: 326 WTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT 385
Query: 272 QPDPVTFTAVLSACAHSGLVD-----------------------------KAWDIFNAMS 302
+PD +T LSAC+ G +D K +I A+S
Sbjct: 386 KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALS 445
Query: 303 GQYGIQPSVE-HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGD 358
+GIQ Y ++G L+ S A + ++M + P + LL G
Sbjct: 446 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505
Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
++ G+ + F + P+ +Y IM +L +AG +EADR+ E M A + G
Sbjct: 506 IQTGRDYFSQMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGAL 564
Query: 416 WIEC 419
C
Sbjct: 565 LFGC 568
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 161/346 (46%), Gaps = 12/346 (3%)
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
H+FV+ + + L C L+ + + +LD + +++ A+ +
Sbjct: 47 THSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESR----Y 102
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV---RPNAVTISSI 180
++ ++ + + ++ P + +WN I G ++ + L ++M G RP+ T +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
F + + G I G+ +K R + +V A I +A G + A++VFD R L
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W +I+ Y G+A KA+ ++ M + G++PD VT ++S+C+ G +++ + +
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+ + G++ ++ ++ + S+ I EA + K + W ++ G + G ++
Sbjct: 283 VK-ENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISGYARCGLLD 340
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406
+ + + D ++E ++ + M QA R +A + ++M+ S
Sbjct: 341 VSRKLFD---DMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTS 383
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 65/288 (22%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL---------------------- 38
+ KR IVSW +MI+GY++ G + + LF +M V+
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377
Query: 39 --------RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
+PD +T++ L AC Q + G+ +H ++ + + +++ + +L+ MYAKC
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437
Query: 91 GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
G++ A ++ + ++ ++Y+AII G +HG A+ F
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFN------------------ 479
Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210
EM +G+ P+ +T + S H ++ G++ +K+R++ N
Sbjct: 480 -------------EMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS-QMKSRFNLNPQ 525
Query: 211 VA--TAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWTAIISAYAAHGD 255
+ + ++D + G L A R+ + + +W A++ HG+
Sbjct: 526 LKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGN 573
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/472 (36%), Positives = 282/472 (59%), Gaps = 8/472 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M++RDIV+WNSMI+G++Q G+ +F +ML +L PD T+ SVL AC +
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYSAIISGY 118
G ++H+ ++ + + + NALI MY++CG ++ AR L+++ KD ++A++ GY
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+ G + +A ++F +K + W A+I G Q+ + ++L R M G RPN+ T++
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG- 237
++ S+ S ++L GK+IHG AVK+ ++ V+ A+I YAK G + A R FD +
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477
Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
R + WT++I A A HG A +A+ LF ML G++PD +T+ V SAC H+GLV++
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
F+ M I P++ HYACMV + RA + EA EF+ KMP++P WG+LL +
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597
Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
+++LGK + L +EPEN+G Y +ANLYS G+W+EA ++R+ MK+ + K G SWI
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
E + F +D + + +IY+ ++++ +++ GYV +L ++EEE
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEE 709
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 215/473 (45%), Gaps = 71/473 (15%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ +RD VSW +MI GY G Y + + +M+ + P T+ +VL + + +
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATRCMET 164
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +VH+F+++ ++ ++ + N+L+ MYAKCG A+ + D M +D S++A+I+ +M
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQ 224
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISS 179
G ++ AM F+ M + TWN++ISG Q LD+ +M + S + P+ T++S
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYD-------------------------------RN 208
+ S ++ L GK+IH + V +D ++
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 209 IYVA--TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266
+ + TA++D Y K G ++ A+ +F K R ++ WTA+I Y HG +A++LF M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 267 LNNGIQPDPVTFTAVLSACAHS----------GLVDKAWDIF-----NAMSGQYGIQPSV 311
+ G +P+ T A+LS + G K+ +I+ NA+ Y ++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 312 E----------------HYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYG 352
+ M+ L++ EA E M ++P + +
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 353 ASISGDVELGKFVCDHLFEIEP--ENTGNYIIMANLYSQAGRWDEADRVREQM 403
+ +G V G+ D + +++ +Y M +L+ +AG EA E+M
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 124/246 (50%), Gaps = 4/246 (1%)
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
VH VI+S + +++ N L+ +Y+K G +AR L DEM + S++ ++S Y G
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
++ + F + + +W +I G ++ + ++ +M G+ P T++++ +
Sbjct: 96 MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
+ ++ GK++H + VK N+ V+ ++++ YAK G A+ VFDR R + W
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
A+I+ + G A++ F +M + D VT+ +++S G +A DIF+ M
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQM----AERDIVTWNSMISGFNQRGYDLRALDIFSKMLR 271
Query: 304 QYGIQP 309
+ P
Sbjct: 272 DSLLSP 277
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 283/469 (60%), Gaps = 10/469 (2%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
+IVSWN +++G+++ G+++E +F++ ++ PD VTV SVL + G S + G +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H +VI+ + D + +A+I MY K G + +L ++ + +A I+G +G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+KA+++F++ K + +W ++I+G QN + L+L REMQ +GV+PN VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + L G+ HG+AV+ N++V +A+ID YAK G ++ +Q VF+ ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W ++++ ++ HG A + +S+F ++ ++PD ++FT++LSAC GL D+ W F
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
MS +YGI+P +EHY+CMV +L RA ++ EA + + +MP +P + VWGALL + +V+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + + LF +EPEN G Y++++N+Y+ G W E D +R +M+ GL K PG SWI+
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
+ + +A D S + +QI ++ + MR+ G+ L +VEE+
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683
Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 189/394 (47%), Gaps = 42/394 (10%)
Query: 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
I S++S+I ++ + + +F M + ++ PD + ++ + C + S G ++H
Sbjct: 81 IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCAELSAFKVGKQIH 139
Query: 66 NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
S + MD ++ ++ MY +CG + AR + D MSDKD V+ SA++ Y G +E
Sbjct: 140 CVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199
Query: 126 KAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
+ + + M+ G+ +WN ++SG ++ H+ + + +++ G P+ VT+SS+
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259
Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG-------------- 227
L G+ IHGY +K ++ V +A+ID Y K+G ++G
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319
Query: 228 -----------------AQRVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEM 266
A +F+ FK +++ + WT+II+ A +G +A+ LF EM
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379
Query: 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326
G++P+ VT ++L AC + + + + + + +V + ++ + ++ R
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGR 438
Query: 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
I+ + + MP K + W +L+ G S+ G +
Sbjct: 439 INLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAK 471
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 104/207 (50%), Gaps = 1/207 (0%)
Query: 95 YARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154
+AR +L + D + +I+ Y + A + Q + P + +++++I L +
Sbjct: 38 HAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96
Query: 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214
+ + M + G+ P++ + ++F + + S K GK+IH + + D + +V +
Sbjct: 97 FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156
Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
+ Y + G + A++VFDR + ++ +A++ AYA G + V + +EM ++GI+ +
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAM 301
V++ +LS SG +A +F +
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +++V WNS++ G+S G +E ++F ++ + L+PD ++ S+L ACGQ
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507
Query: 61 GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGY 118
G + + E + IK L + ++ + + G L A L+ EM + D + A+++
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSC 567
Query: 119 MVHGFVEKA 127
+ V+ A
Sbjct: 568 RLQNNVDLA 576
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
+ H +K+ + Y++ +I +Y+ + A V ++ ++++I A
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH--SGLVDKAWDIFNAMSG---QYGIQP 309
++++ +F+ M ++G+ PD + CA + V K + +SG +Q
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 310 SVEHYACMVGVLSRARRI 327
S+ H G + AR++
Sbjct: 156 SMFHMYMRCGRMGDARKV 173
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 278/470 (59%), Gaps = 7/470 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ ++D+VSWNSMI G+ Q G ++ LF++M S ++ VT+V VL AC + ++ F
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +V +++ E+ + ++L + NA++ MY KCGS++ A+ L D M +KD V+++ ++ GY +
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISS 179
E A ++ M + + WNA+IS QN + L + E+Q ++ N +T+ S
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
S + L+ G+ IH Y K+ N +V +A+I Y+K G L ++ VF+ + R
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRD 430
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
+ +W+A+I A HG ++AV +F +M ++P+ VTFT V AC+H+GLVD+A +F+
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFH 490
Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
M YGI P +HYAC+V VL R+ + +A +F+ MP+ PS VWGALL I ++
Sbjct: 491 QMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 550
Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
L + C L E+EP N G +++++N+Y++ G+W+ +R+ M+ +GL K PG S IE
Sbjct: 551 NLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
G + F++ D + SE++Y L ++ ++ GY +L +EEE
Sbjct: 611 DGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEE 660
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/455 (22%), Positives = 210/455 (46%), Gaps = 73/455 (16%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ K + +WN++I Y+ G F +M++ P+ T +++A + S +
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H ++S + D+++ N+LI Y CG LD A + + +KD VS++++I+G++
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G +KA++LF ++M++ V+ + VT+ +
Sbjct: 210 KGSPDKALELF-------------------------------KKMESEDVKASHVTMVGV 238
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + NL+ G+++ Y +NR + N+ +A A++D Y K G + A+R+FD + +
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298
Query: 241 IIWT-------------------------------AIISAYAAHGDASKAVSLFNEM-LN 268
+ WT A+ISAY +G ++A+ +F+E+ L
Sbjct: 299 VTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQ 358
Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
++ + +T + LSACA G ++ I + + ++GI+ + + ++ + S+ +
Sbjct: 359 KNMKLNQITLVSTLSACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLE 417
Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLY 387
++ E + + K VW A++ G ++ G G D ++++ N N + N++
Sbjct: 418 KSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNGVTFTNVF 473
Query: 388 ---SQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
S G DEA+ + QM ES +P C
Sbjct: 474 CACSHTGLVDEAESLFHQM-ESNYGIVPEEKHYAC 507
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 155/365 (42%), Gaps = 40/365 (10%)
Query: 34 NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA--KCG 91
N P + +S+++ C + + H +I + D + + L M A
Sbjct: 22 NQPTTNNERSRHISLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFA 78
Query: 92 SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
SL+YAR + DE+ + +++ +I Y P LS W
Sbjct: 79 SLEYARKVFDEIPKPNSFAWNTLIRAYASG-------------PDPVLSIW--------- 116
Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
A LD+V E Q PN T + + S+L G+ +HG AVK+ +++V
Sbjct: 117 -----AFLDMVSESQC---YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFV 168
Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
A ++I Y G L A +VF K + ++ W ++I+ + G KA+ LF +M + +
Sbjct: 169 ANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 228
Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331
+ VT VLSACA ++ + + + + + ++ M+ + ++ I +A
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIE-ENRVNVNLTLANAMLDMYTKCGSIEDAK 287
Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391
M K + W +L G +IS D E + V L + ++ + + + Y Q G
Sbjct: 288 RLFDAMEEKDNV-TWTTMLDGYAISEDYEAAREV---LNSMPQKDIVAWNALISAYEQNG 343
Query: 392 RWDEA 396
+ +EA
Sbjct: 344 KPNEA 348
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/506 (34%), Positives = 276/506 (54%), Gaps = 43/506 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ +R+++ N MI Y GFY E +F M V RPD T VL+AC S IV
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV-RPDHYTFPCVLKACSCSGTIVI 158
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H + + L++ N L+ MY KCG L AR +LDEMS +D VS+++++ GY
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218
Query: 121 HGFVEKAM-------------------------------------DLFQVMKRPGLSTWN 143
+ + A+ D+F M + L +WN
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWN 278
Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
+I ++N ++L M+A G P+AV+I+S+ S L GK+IHGY +
Sbjct: 279 VMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK 338
Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
+ N+ + A+ID YAK G L A+ VF+ K R ++ WTA+ISAY G AV+LF
Sbjct: 339 KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALF 398
Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
+++ ++G+ PD + F L+AC+H+GL+++ F M+ Y I P +EH ACMV +L R
Sbjct: 399 SKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGR 458
Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
A ++ EA F+ M ++P+ +VWGALL + D ++G D LF++ PE +G Y+++
Sbjct: 459 AGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518
Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
+N+Y++AGRW+E +R MK GL K PG S +E + + +F+ D S +S++IY L
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578
Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
+ L+ M+E GYV L +VEEE
Sbjct: 579 DVLVKKMKELGYVPDSESALHDVEEE 604
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 151/376 (40%), Gaps = 60/376 (15%)
Query: 44 TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103
TV + Q DI VH+ +I ++ + + L+ YA + AR + DE+
Sbjct: 41 TVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEI 100
Query: 104 SDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
+++ + + +I Y+ +GF + + +F M
Sbjct: 101 PERNVIIINVMIRSYVNNGFYGEGVKVFGTM----------------------------- 131
Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
VRP+ T + S + G++IHG A K ++V ++ Y K G
Sbjct: 132 --CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCG 189
Query: 224 FLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
FL A+ V D R ++ W +++ YA + A+ + EM + I D T ++L
Sbjct: 190 FLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249
Query: 284 ACAHSGLVDKAW--DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM---- 337
A +++ + + D+F M + S+ + M+GV + EA E S+M
Sbjct: 250 AVSNTTTENVMYVKDMFFKMG-----KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG 304
Query: 338 ---------PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
V P+ AL G I G +E K + + L E N +I ++Y+
Sbjct: 305 FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE-------NALI--DMYA 355
Query: 389 QAGRWDEADRVREQMK 404
+ G ++A V E MK
Sbjct: 356 KCGCLEKARDVFENMK 371
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 178/536 (33%), Positives = 272/536 (50%), Gaps = 72/536 (13%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++D + WN+MI+GY + Y E +FR+++N R D T++ +L A + ++
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG--- 117
GM++H+ ++ ++ I +Y+KCG + AL E D V+Y+A+I G
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 118 ---------------------------------------YMVHGF--------------- 123
Y +HG+
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 124 ----------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
+E A LF L +WNA+ISG QN E + L REMQ S PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
VTI+ I S + L GK +H ++ +IYV+TA+I YAK G + A+R+FD
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479
Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
++ + W +IS Y HG +A+++F EMLN+GI P PVTF VL AC+H+GLV +
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539
Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
+IFN+M +YG +PSV+HYACMV +L RA + A +F+ M ++P + VW LL
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
I D L + V + LFE++P+N G +++++N++S + +A VR+ K+ LAK PG
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659
Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
+ IE F + D S + ++IY LE+L G MRE GY + L +VEEE
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEE 715
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 43/364 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ + D+ +N ++ G+S ++F + S L+P+ T + A D
Sbjct: 78 VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H + +L + + ++ MY K ++ AR + D M +KD + ++ +ISGY
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+ +++ +F+ DL+ E S R + T+ I
Sbjct: 198 NEMYVESIQVFR---------------------------DLINE---SCTRLDTTTLLDI 227
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ L+ G +IH A K + YV T I Y+K G + +F F+ +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDI 287
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ + A+I Y ++G+ ++SLF E++ +G + T +++ H L+ A
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI-------YA 340
Query: 301 MSGQYGIQPSVEHYA----CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
+ G Y ++ + +A + V S+ I A + + P K S W A++ G + +
Sbjct: 341 IHG-YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEK-SLPSWNAMISGYTQN 398
Query: 357 GDVE 360
G E
Sbjct: 399 GLTE 402
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 4/242 (1%)
Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSI 180
G + A D+F ++RP + +N ++ G N + L + ++ S ++PN+ T +
Sbjct: 66 GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFA 125
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S S F + + G+ IHG AV + D + + + I+ Y K + A++VFDR +
Sbjct: 126 ISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
I+W +IS Y + +++ +F +++N + D T +L A A + I +
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-H 244
Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
+++ + G + + S+ +I + + KP + A+++G + +G+
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGET 303
Query: 360 EL 361
EL
Sbjct: 304 EL 305
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 275/469 (58%), Gaps = 6/469 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS RD+V+WN+MI Y + G +E LF EM +S V+ PD + + +++ ACG++ ++ +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRY 230
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
++ F+IE+ ++MD + AL+ MYA G +D AR +MS ++ +A++SGY
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G ++ A +F ++ L W +IS V+++ + L + EM SG++P+ V++ S+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S ++ L K +H N + + + A+I+ YAK G L + VF++ R++
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W+++I+A + HG+AS A+SLF M ++P+ VTF VL C+HSGLV++ IF +
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 470
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ +Y I P +EHY CMV + RA + EA E + MPV + +WG+L+ I G++E
Sbjct: 471 MTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELE 530
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGKF + E+EP++ G ++M+N+Y++ RW++ +R M+E + K G S I+ +
Sbjct: 531 LGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQN 590
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
G F+ D +S +IY L+ ++ ++ GYV +L +VEEE
Sbjct: 591 GKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEE 639
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 201/408 (49%), Gaps = 51/408 (12%)
Query: 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
R D + + +L+A + S + GME+H + D ++ + MYA CG ++YAR
Sbjct: 108 RLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARN 167
Query: 99 LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ------N 152
+ DEMS +D V+++ +I Y G V++A LF+ MK + ++ +V N
Sbjct: 168 VFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN 227
Query: 153 NRH-EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
R+ A+ + + E + VR + ++++ ++++ + +E + RN++V
Sbjct: 228 MRYNRAIYEFLIE---NDVRMDTHLLTALVTMYAGAGCMDMAREF----FRKMSVRNLFV 280
Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
+TA++ Y+K G L AQ +FD+ + + L+ WT +ISAY +A+ +F EM +GI
Sbjct: 281 STAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGI 340
Query: 272 QPDPVTFTAVLSACAHSGLVDKA-W--------------DIFNAMSGQYG---------- 306
+PD V+ +V+SACA+ G++DKA W I NA+ Y
Sbjct: 341 KPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRD 400
Query: 307 -----IQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGD 358
+ +V ++ M+ LS S+A ++M V+P+ + +LYG S SG
Sbjct: 401 VFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL 460
Query: 359 VELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
VE GK + + + I P+ +Y M +L+ +A EA V E M
Sbjct: 461 VEEGKKIFASMTDEYNITPK-LEHYGCMVDLFGRANLLREALEVIESM 507
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 131/283 (46%), Gaps = 6/283 (2%)
Query: 127 AMDLFQVMKRPGLS-TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
A+++F + P S +N + L +++ A + + ++ G R + + I S
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
S L G E+HG A K + +V T +D YA G ++ A+ VFD R ++ W
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
+I Y G +A LF EM ++ + PD + ++SAC +G + I+ + +
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI-EN 241
Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
++ +V + + A + A EF KM V+ + V A++ G S G ++ + +
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-NLFVSTAMVSGYSKCGRLDDAQVI 300
Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
D + E ++ + M + Y ++ EA RV E+M SG+
Sbjct: 301 FD---QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGI 340
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 267/460 (58%), Gaps = 8/460 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M R++VSWNS+I + Q G E +F+ ML S V PD VT+ SV+ AC S I
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV-EPDEVTLASVISACASLSAIKV 271
Query: 61 GMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
G EVH V+++ ++ D+ + NA + MYAKC + AR + D M ++ ++ +++ISGY
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
+ + A +F M + +WNA+I+G QN +E L L ++ V P + ++
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
I + + L G + H + +K+ + + +I+V ++ID Y K G + VF
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451
Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
+ R + W A+I +A +G ++A+ LF EML +G +PD +T VLSAC H+G V++
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEE 511
Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
F++M+ +G+ P +HY CMV +L RA + EA + +MP++P + +WG+LL
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAAC 571
Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
+ ++ LGK+V + L E+EP N+G Y++++N+Y++ G+W++ VR+ M++ G+ K PG
Sbjct: 572 KVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPG 631
Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
SWI+ G F+ KD S + +QI+ +L+ L+ MR E
Sbjct: 632 CSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPE 671
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 162/301 (53%), Gaps = 1/301 (0%)
Query: 41 DGVTVVSVLQACGQSS-DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
D +L +C +S ++ VH VI+S +++I N LI Y+KCGSL+ R +
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77
Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVL 159
D+M ++ +++++++G GF+++A LF+ M TWN+++SG Q++R E L
Sbjct: 78 FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137
Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
M G N + +S+ S S +++ G ++H K+ + ++Y+ +A++D Y
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197
Query: 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
+K G ++ AQRVFD R+++ W ++I+ + +G A +A+ +F ML + ++PD VT
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257
Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPV 339
+V+SACA + ++ + ++ + V + ++ RI EA MP+
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Query: 340 K 340
+
Sbjct: 318 R 318
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 157/318 (49%), Gaps = 64/318 (20%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD +WNSM++G++Q EE F M++ + + SVL AC +D+
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYF-AMMHKEGFVLNEYSFASVLSACSGLNDMNK 170
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G++VH+ + +S D++I +AL+ MY+KCG+++ A+ + DEM D++ VS++++I+ +
Sbjct: 171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQ 230
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+G +A+D+FQ+M S V P+ VT++S+
Sbjct: 231 NGPAVEALDVFQMMLE-------------------------------SRVEPDEVTLASV 259
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAKTGFLHGAQRVFD------ 233
S + S +K G+E+HG VKN RN I ++ A +D YAK + A+ +FD
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Query: 234 -------------------------RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
+ R+++ W A+I+ Y +G+ +A+SLF +
Sbjct: 320 VIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379
Query: 269 NGIQPDPVTFTAVLSACA 286
+ P +F +L ACA
Sbjct: 380 ESVCPTHYSFANILKACA 397
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 170/465 (36%), Positives = 259/465 (55%), Gaps = 39/465 (8%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
+D+V+W +MI G+ + G E F EM + V + +TVVSVL+A G+ D+ FG
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA-ANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 64 VHNFVIES-HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
VH +E+ +K D++I ++L+ MY KC D A+ + DEM ++ V
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVV------------- 272
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
TW A+I+G VQ+ + + + EM S V PN T+SS+ S
Sbjct: 273 ------------------TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
+H L G+ +H Y +KN + N T +ID Y K G L A VF+R +++
Sbjct: 315 ACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYT 374
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
WTA+I+ +AAHG A A LF ML++ + P+ VTF AVLSACAH GLV++ +F +M
Sbjct: 375 WTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMK 434
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
G++ ++P +HYACMV + R + EA + +MP++P+ VWGAL + D ELG
Sbjct: 435 GRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELG 494
Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
K+ + +++P ++G Y ++ANLYS++ WDE RVR+QMK+ + K PG SWIE G
Sbjct: 495 KYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGK 554
Query: 423 LQSFVA-KDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESA 466
L F+A D +S+ +Y L+ + MR L DE+E+ +A
Sbjct: 555 LCEFIAFDDKKPLESDDLYKTLDTVGVQMR-----LPDELEDVTA 594
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/434 (23%), Positives = 188/434 (43%), Gaps = 73/434 (16%)
Query: 9 WNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
W+S+I +S G + +R M + V+ P T +L+A + D + H
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVI-PSRHTFPPLLKAVFKLRD-SNPFQFHA 127
Query: 67 FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
+++ + D ++ N+LI Y+ G D+A L D DKD V+++A+I G++ +G +
Sbjct: 128 HIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASE 187
Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
AM F EM+ +GV N +T+ S+
Sbjct: 188 AMVYFV-------------------------------EMKKTGVAANEMTVVSVLKAAGK 216
Query: 187 FSNLKGGKEIHG-YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
+++ G+ +HG Y R ++++ ++++D Y K AQ+VFD R+++ WTA
Sbjct: 217 VEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTA 276
Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI-------- 297
+I+ Y K + +F EML + + P+ T ++VLSACAH G + + +
Sbjct: 277 LIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNS 336
Query: 298 --FNAMSGQYGI--------------------QPSVEHYACMVGVLSRARRISEATEFVS 335
N +G I + +V + M+ + +A +
Sbjct: 337 IEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFY 396
Query: 336 KM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQ 389
M V P+ + A+L + G VE G+ + + F +EP+ +Y M +L+ +
Sbjct: 397 TMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPK-ADHYACMVDLFGR 455
Query: 390 AGRWDEADRVREQM 403
G +EA + E+M
Sbjct: 456 KGLLEEAKALIERM 469
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 36/258 (13%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M R++V+W ++IAGY Q +++ +F EML S V P+ T+ SVL AC +
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV-APNEKTLSSVLSACAHVGALHR 324
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G VH ++I++ I+++ LI +Y KCG L+ A + + + +K+ +++A+I+G+
Sbjct: 325 GRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAA 384
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG+ A DLF M +S V PN VT ++
Sbjct: 385 HGYARDAFDLFYT-------------------------------MLSSHVSPNEVTFMAV 413
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR 238
S +H ++ G+ + ++K R++ ++D + + G L A+ + +R
Sbjct: 414 LSACAHGGLVEEGRRLF-LSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 239 SL-IIWTAIISAYAAHGD 255
++W A+ + H D
Sbjct: 473 PTNVVWGALFGSCLLHKD 490
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 127 AMDLFQVMKRPGLSTWNAVI---SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
A L ++ + W+++I SG + NR + L R M+ +GV P+ T +
Sbjct: 55 ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFL-AYRHMRRNGVIPSRHTFPPLLKA 113
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
+ + H + VK D + +V ++I Y+ +G A R+FD + + ++ W
Sbjct: 114 VFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTW 172
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
TA+I + +G AS+A+ F EM G+ + +T +VL A
Sbjct: 173 TAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKA 213
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 264/474 (55%), Gaps = 34/474 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M R I WN+MIAGYSQ +E LF M S L + T+ V+ AC +S
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
+H FV++ + D ++ N L+ MY++ G +D A + +M D+D V+++ +I+GY+
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR----PNAVT 176
E A+ L M+ +L R++ R PN++T
Sbjct: 484 SEHHEDALLLLHKMQ------------------------NLERKVSKGASRVSLKPNSIT 519
Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
+ +I + S L GKEIH YA+KN ++ V +A++D YAK G L +++VFD+
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
+++I W II AY HG+ +A+ L M+ G++P+ VTF +V +AC+HSG+VD+
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK-PSAKVWGALLYGASI 355
IF M YG++PS +HYAC+V +L RA RI EA + ++ MP A W +LL + I
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
++E+G+ +L ++EP +Y+++AN+YS AG WD+A VR MKE G+ K PG S
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Query: 416 WIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
WIE + FVA D+S +SE++ LE L MR+EGYV +L VEE+
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 38/294 (12%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ---SSD 57
+S+R+ VSWNS+I+ +E FR ML+ V P T+VSV+ AC
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-EPSSFTLVSVVTACSNLPMPEG 217
Query: 58 IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
++ G +VH + + +++ +I N L+ MY K G L ++ LL +D
Sbjct: 218 LMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD---------- 266
Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
L TWN V+S L QN + L+ +REM GV P+ TI
Sbjct: 267 ---------------------LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305
Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
SS+ SH L+ GKE+H YA+KN D N +V +A++D Y + +RVFD
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSG 289
R + +W A+I+ Y+ + +A+ LF M + G+ + T V+ AC SG
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 36/254 (14%)
Query: 38 LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-LWICNALIGMYAKCGSLDYA 96
++PD ++L+A D+ G ++H V + +D + + N L+ +Y KCG
Sbjct: 93 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 97 RALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156
+ D +S++++VS WN++IS L + E
Sbjct: 153 YKVFDRISERNQVS-------------------------------WNSLISSLCSFEKWE 181
Query: 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG---GKEIHGYAVKNRYDRNIYVAT 213
L+ R M V P++ T+ S+ + S+ +G GK++H Y ++ + + N ++
Sbjct: 182 MALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIIN 240
Query: 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
++ Y K G L ++ + F GR L+ W ++S+ + +A+ EM+ G++P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 274 DPVTFTAVLSACAH 287
D T ++VL AC+H
Sbjct: 301 DEFTISSVLPACSH 314
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 142 WNAVISGLVQNNR-HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
W ++ V++N EAVL V +M G++P+ ++ + +++ GK+IH +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYV-DMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 201 VKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
K Y ++ VA +++ Y K G +VFDR R+ + W ++IS+ + A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183
Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAH 287
+ F ML+ ++P T +V++AC++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSN 211
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 308 bits (789), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 162/493 (32%), Positives = 260/493 (52%), Gaps = 40/493 (8%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
K DIV+WNS+++GY+ G ++ A+ + M L+P ++ S+LQA + + G
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRM-QIAGLKPSTSSISSLLQAVAEPGHLKLGK 245
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---------------- 106
+H +++ + + D+++ LI MY K G L YAR + D M K
Sbjct: 246 AIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYAC 305
Query: 107 -------------------DEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWN 143
D ++++++ SGY G EKA+D+ MK P + +W
Sbjct: 306 LLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWT 365
Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
A+ SG +N L + +MQ GV PNA T+S++ + S L GKE+HG+ ++
Sbjct: 366 AIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRK 425
Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
+ YVATA++D Y K+G L A +F K +SL W ++ YA G + ++ F
Sbjct: 426 NLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAF 485
Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
+ ML G++PD +TFT+VLS C +SGLV + W F+ M +YGI P++EH +CMV +L R
Sbjct: 486 SVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGR 545
Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
+ + EA +F+ M +KP A +WGA L I D+EL + L +EP N+ NY++M
Sbjct: 546 SGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMM 605
Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
NLYS RW++ +R+R M+ + + SWI+ + F A+ + IY L
Sbjct: 606 INLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFEL 665
Query: 444 ERLLGLMREEGYV 456
+L+ M++ GYV
Sbjct: 666 YKLVSEMKKSGYV 678
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 193/357 (54%), Gaps = 9/357 (2%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M KRD ++WN ++ + G +E+ LFREM S D T+V +LQ C
Sbjct: 49 MPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDS-TMVKLLQVCSNKEGFAE 107
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H +V+ ++ ++ +CN+LI MY++ G L+ +R + + M D++ S+++I+S Y
Sbjct: 108 GRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTK 167
Query: 121 HGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
G+V+ A+ L M+ +P + TWN+++SG + + +++ MQ +G++P+ +
Sbjct: 168 LGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSS 227
Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
ISS+ + +LK GK IHGY ++N+ ++YV T +ID Y KTG+L A+ VFD
Sbjct: 228 ISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMD 287
Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296
++++ W +++S + A +L M GI+PD +T+ ++ S A G +KA D
Sbjct: 288 AKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALD 347
Query: 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALL 350
+ M + G+ P+V + + S+ A + KM V P+A LL
Sbjct: 348 VIGKMK-EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLL 403
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 33/260 (12%)
Query: 60 FGMEVHNFVIESHI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
G+ +H +I+ + D + +A +G Y +C SL +A L DEM +D+++++ I+
Sbjct: 5 LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+ G EKA++LF REMQ SG + T+
Sbjct: 65 LRSGNWEKAVELF-------------------------------REMQFSGAKAYDSTMV 93
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
+ + S+ G++IHGY ++ + N+ + ++I Y++ G L +++VF+ K R
Sbjct: 94 KLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDR 153
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
+L W +I+S+Y G A+ L +EM G++PD VT+ ++LS A GL A +
Sbjct: 154 NLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVL 213
Query: 299 NAMSGQYGIQPSVEHYACMV 318
M G++PS + ++
Sbjct: 214 KRMQIA-GLKPSTSSISSLL 232
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ + + SWN M+ GY+ G EE A F ML + + PD +T SVL C S +
Sbjct: 457 IKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAG-MEPDAITFTSVLSVCKNSGLVQE 515
Query: 61 GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGY 118
G + + + + I + C+ ++ + + G LD A + MS K D + A +S
Sbjct: 516 GWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSC 575
Query: 119 MVHG---FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
+H E A QV++ + + +I+ NR E V + +R + +R N V
Sbjct: 576 KIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDV-ERIRNL----MRNNRV 630
Query: 176 TISSIFS 182
+ ++S
Sbjct: 631 RVQDLWS 637
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 258/451 (57%), Gaps = 2/451 (0%)
Query: 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
+V++N+MI+GY GFY+E + R M++S + D T SV++AC + + G +VH
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGI-ELDEFTYPSVIRACATAGLLQLGKQVH 309
Query: 66 NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
+V+ N+L+ +Y KCG D ARA+ ++M KD VS++A++SGY+ G +
Sbjct: 310 AYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368
Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185
+A +F+ MK + +W +ISGL +N E L L M+ G P S +
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428
Query: 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTA 245
G++ H +K +D ++ A+I YAK G + A++VF + W A
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488
Query: 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305
+I+A HG ++AV ++ EML GI+PD +T VL+AC+H+GLVD+ F++M Y
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548
Query: 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFV 365
I P +HYA ++ +L R+ + S+A + +P KP+A++W ALL G + G++ELG
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQS 425
D LF + PE+ G Y++++N+++ G+W+E RVR+ M++ G+ K SWIE + +
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668
Query: 426 FVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
F+ DTS ++E +Y+ L+ L MR GYV
Sbjct: 669 FLVDDTSHPEAEAVYIYLQDLGKEMRRLGYV 699
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 159/312 (50%), Gaps = 13/312 (4%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGM 62
RD V +N+MI G+S LF +M + +PD T SVL + D +
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG-FKPDNFTFASVLAGLALVADDEKQCV 169
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGS----LDYARALLDEMSDKDEVSYSAIISGY 118
+ H ++S + NAL+ +Y+KC S L AR + DE+ +KDE S++ +++GY
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229
Query: 119 MVHGFVEKAMDLFQVM-KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
+ +G+ + +L + M L +NA+ISG V ++ L++VR M +SG+ + T
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289
Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
S+ + L+ GK++H Y ++ R D + + +++ Y K G A+ +F++
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLR-REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPA 348
Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
+ L+ W A++S Y + G +A +F EM I +++ ++S A +G ++ +
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKL 404
Query: 298 FNAMSGQYGIQP 309
F+ M + G +P
Sbjct: 405 FSCMKRE-GFEP 415
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 173/386 (44%), Gaps = 49/386 (12%)
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
VH +I + I N LI +Y K L+YAR L DE+S+ D+++ + ++SGY G
Sbjct: 36 VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95
Query: 124 VEKAMDLFQVMKRP----GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
+ A +F+ K P +NA+I+G NN + ++L +M+ G +P+ T +S
Sbjct: 96 ITLARGVFE--KAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFAS 153
Query: 180 IFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG----FLHGAQRVFDR 234
+ + + + + K + H A+K+ V+ A++ Y+K LH A++VFD
Sbjct: 154 VLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDE 213
Query: 235 FKGR--------------------------------SLIIWTAIISAYAAHGDASKAVSL 262
+ L+ + A+IS Y G +A+ +
Sbjct: 214 ILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEM 273
Query: 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322
M+++GI+ D T+ +V+ ACA +GL+ + + + ++ +V +
Sbjct: 274 VRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYY 331
Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382
+ + EA KMP K W ALL G SG + K + E++ +N +++I
Sbjct: 332 KCGKFDEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLI---FKEMKEKNILSWMI 387
Query: 383 MANLYSQAGRWDEADRVREQMKESGL 408
M + ++ G +E ++ MK G
Sbjct: 388 MISGLAENGFGEEGLKLFSCMKREGF 413
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 63/287 (21%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR--------------PDGVTVV 46
M +D+VSWN++++GY G E K +F+EM +L +G+ +
Sbjct: 346 MPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLF 405
Query: 47 SVLQACG-QSSDIVF---------------GMEVHNFVIESHIKMDLWICNALIGMYAKC 90
S ++ G + D F G + H +++ L NALI MYAKC
Sbjct: 406 SCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKC 465
Query: 91 GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150
G ++ AR + M D VS++A+I+ HG +A+D+++
Sbjct: 466 GVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYE------------------ 507
Query: 151 QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL-KGGKEIHGYAVKNRYDRNI 209
EM G+RP+ +T+ ++ + SH + +G K R
Sbjct: 508 -------------EMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA 554
Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-IWTAIISAYAAHGD 255
+ID ++G A+ V + + IW A++S HG+
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGN 601
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247
++L+ + +HG + + ++ +ID Y K+ L+ A+++FD I T ++
Sbjct: 28 TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87
Query: 248 SAYAAHGDAS---------------------------------KAVSLFNEMLNNGIQPD 274
S Y A GD + A++LF +M + G +PD
Sbjct: 88 SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147
Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR---ARRISEAT 331
TF +VL+ A +K F+A + + G +V V S+ + + +
Sbjct: 148 NFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSA 207
Query: 332 EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQ 389
V ++ + W ++ G +G +LG + L E +N Y M + Y
Sbjct: 208 RKVFDEILEKDERSWTTMMTGYVKNGYFDLG----EELLEGMDDNMKLVAYNAMISGYVN 263
Query: 390 AGRWDEADRVREQMKESGL 408
G + EA + +M SG+
Sbjct: 264 RGFYQEALEMVRRMVSSGI 282
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/471 (36%), Positives = 266/471 (56%), Gaps = 13/471 (2%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
+ D WN MI G+S E L++ ML S + T S+L+AC S
Sbjct: 77 RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETT 135
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
++H + + + D++ N+LI YA G+ A L D + + D+VS++++I GY+ G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
++ A+ LF+ M +W +ISG VQ + ++ L L EMQ S V P+ V++++ S
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
+ L+ GK IH Y K R + + +ID YAK G + A VF K +S+
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA 315
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
WTA+IS YA HG +A+S F EM GI+P+ +TFTAVL+AC+++GLV++ IF +M
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
Y ++P++EHY C+V +L RA + EA F+ +MP+KP+A +WGALL I ++ELG
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435
Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
+ + + L I+P + G Y+ AN+++ +WD+A R MKE G+AK+PG S I G
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495
Query: 423 LQSFVAKDTSGDKSEQI---YLILERLLGLMREEGYV------LLDEVEEE 464
F+A D S + E+I + I+ R L E GYV LLD V+++
Sbjct: 496 THEFLAGDRSHPEIEKIQSKWRIMRRKL---EENGYVPELEEMLLDLVDDD 543
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 43/300 (14%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M++++ +SW +MI+GY Q +E LF EM NS V PD V++ + L AC Q +
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV-EPDNVSLANALSACAQLGALEQ 265
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H+++ ++ I+MD + LI MYAKCG ++ A + + K +++A+ISGY
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG +A+ F EMQ G++PN +T +++
Sbjct: 326 HGHGREAISKFM-------------------------------EMQKMGIKPNVITFTAV 354
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT--AIIDTYAKTGFLHGAQRVFDRFKGR 238
+ S+ ++ GK I Y+++ Y+ + I+D + G L A+R +
Sbjct: 355 LTACSYTGLVEEGKLIF-YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK 413
Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT-FTAVLSACAHSGLVDKAWD 296
+ +IW A++ A H K + L E+ I DP V A H+ +DK WD
Sbjct: 414 PNAVIWGALLKACRIH----KNIELGEEIGEILIAIDPYHGGRYVHKANIHA--MDKKWD 467
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 143/350 (40%), Gaps = 72/350 (20%)
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
F+ A +F RP WN +I G ++ E L L + M S NA T S+
Sbjct: 64 FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLK 123
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR-------- 234
S+ S + +IH K Y+ ++Y ++I++YA TG A +FDR
Sbjct: 124 ACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183
Query: 235 ----FKG-------------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
KG ++ I WT +IS Y +A+ LF+EM N+ +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243
Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-MVGVLSRARRISEA 330
+PD V+ LSACA G +++ I + ++ SV C ++ + ++ + EA
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEA 301
Query: 331 TEF----------------------------------VSKMPVKPSAKVWGALLYGASIS 356
E + KM +KP+ + A+L S +
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 357 GDVELGKFV---CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
G VE GK + + + ++P +Y + +L +AG DEA R ++M
Sbjct: 362 GLVEEGKLIFYSMERDYNLKP-TIEHYGCIVDLLGRAGLLDEAKRFIQEM 410
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 258/471 (54%), Gaps = 39/471 (8%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----SDI 58
KR I WN++ + G EE L+ +M N + D T VL+AC S + +
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTVNHL 198
Query: 59 VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
+ G E+H + ++I L+ MYA+ G +DYA + M ++ VS+SA+I+ Y
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+G +A+ F+ +++RE + S PN+VT+
Sbjct: 259 AKNGKAFEALRTFR---------------------------EMMRETKDSS--PNSVTMV 289
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
S+ + + L+ GK IHGY ++ D + V +A++ Y + G L QRVFDR R
Sbjct: 290 SVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDR 349
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
++ W ++IS+Y HG KA+ +F EML NG P PVTF +VL AC+H GLV++ +F
Sbjct: 350 DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLF 409
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
M +GI+P +EHYACMV +L RA R+ EA + V M +P KVWG+LL I G+
Sbjct: 410 ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGN 469
Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
VEL + LF +EP+N GNY+++A++Y++A WDE RV++ ++ GL K+PGR W+E
Sbjct: 470 VELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWME 529
Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
+ SFV+ D EQI+ L +L M+E+GY+ +L E+E E
Sbjct: 530 VRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 177/416 (42%), Gaps = 74/416 (17%)
Query: 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99
P T ++ CG S + + VH ++++ D ++ LIGMY+ GS+DYAR +
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 100 LDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRH 155
D+ + ++A+ + G E+ + L+ M R G+ T+ V+ V +
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE-- 192
Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
++L GKEIH + + Y ++Y+ T +
Sbjct: 193 -----------------------------CTVNHLMKGKEIHAHLTRRGYSSHVYIMTTL 223
Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML--NNGIQP 273
+D YA+ G + A VF R+++ W+A+I+ YA +G A +A+ F EM+ P
Sbjct: 224 VDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSP 283
Query: 274 DPVTFTAVLSACA-----------HSGLVDKAWD----IFNAMSGQYGIQPSVE------ 312
+ VT +VL ACA H ++ + D + +A+ YG +E
Sbjct: 284 NSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343
Query: 313 ---HYACMV---------GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
H +V GV ++ + E + P+ + ++L S G VE
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 361 LGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
GK + + ++ I+P+ +Y M +L +A R DEA ++ + M+ K+ G
Sbjct: 404 EGKRLFETMWRDHGIKPQ-IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 34/262 (12%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN-SPVLRPDGVTVVSVLQACGQSSDIV 59
M R++VSW++MIA Y++ G E FREM+ + P+ VT+VSVLQAC + +
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 60 FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
G +H +++ + L + +AL+ MY +CG L+ + + D M D+D VS++++IS Y
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
VHG+ +KA+ +F+ EM A+G P VT S
Sbjct: 363 VHGYGKKAIQIFE-------------------------------EMLANGASPTPVTFVS 391
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNR-YDRNIYVATAIIDTYAKTGFL-HGAQRVFDRFKG 237
+ SH ++ GK + ++ I ++D + L A+ V D
Sbjct: 392 VLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
Query: 238 RSLIIWTAIISAYAAHGDASKA 259
+W +++ + HG+ A
Sbjct: 452 PGPKVWGSLLGSCRIHGNVELA 473
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%)
Query: 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208
L+Q+ E L + + P+ T + H S+L +H + + N D++
Sbjct: 52 LIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQD 111
Query: 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268
++AT +I Y+ G + A++VFD+ + R++ +W A+ A G + + L+ +M
Sbjct: 112 PFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNR 171
Query: 269 NGIQPDPVTFTAVLSACAHS 288
G++ D T+T VL AC S
Sbjct: 172 IGVESDRFTYTYVLKACVAS 191
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
+I + K G L A RV + S + +I S A+ + +L+NG D
Sbjct: 52 LIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQD 111
Query: 275 PVTFTAVLSACAHSGLVDKAWDIFN 299
P T ++ + G VD A +F+
Sbjct: 112 PFLATKLIGMYSDLGSVDYARKVFD 136
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/444 (35%), Positives = 247/444 (55%), Gaps = 1/444 (0%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
K D+ SWN MI+GY++ YEE L EM + ++ P VT++ VL AC + D
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDKDLCK 256
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
VH +V E + L + NAL+ YA CG +D A + M +D +S+++I+ GY+ G
Sbjct: 257 RVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERG 316
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
++ A F M +W +I G ++ L++ REMQ++G+ P+ T+ S+ +
Sbjct: 317 NLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLT 376
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
+H +L+ G+ I Y KN+ ++ V A+ID Y K G AQ+VF R
Sbjct: 377 ACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT 436
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
WTA++ A +G +A+ +F +M + IQPD +T+ VLSAC HSG+VD+A F M
Sbjct: 437 WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMR 496
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
+ I+PS+ HY CMV +L RA + EA E + KMP+ P++ VWGALL + + D +
Sbjct: 497 SDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMA 556
Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
+ + E+EP+N Y ++ N+Y+ RW + VR ++ + + K PG S IE +G
Sbjct: 557 ELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616
Query: 423 LQSFVAKDTSGDKSEQIYLILERL 446
FVA D S +SE+IY+ LE L
Sbjct: 617 AHEFVAGDKSHLQSEEIYMKLEEL 640
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 64/317 (20%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IVFGME 63
D+V WN+MI G+S+ E L+ ML V PD T +L + + G +
Sbjct: 98 DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGV-TPDSHTFPFLLNGLKRDGGALACGKK 156
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+H V++ + +L++ NAL+ MY+ CG +D AR + D +D S
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS------------- 203
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
WN +ISG + +E ++L+ EM+ + V P +VT+ + S
Sbjct: 204 ------------------WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
S + K +H Y + + + ++ + A+++ YA G + A R+F K R +I W
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305
Query: 244 TAIISAYAAHGDA-------------------------------SKAVSLFNEMLNNGIQ 272
T+I+ Y G+ ++++ +F EM + G+
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365
Query: 273 PDPVTFTAVLSACAHSG 289
PD T +VL+ACAH G
Sbjct: 366 PDEFTMVSVLTACAHLG 382
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 42/287 (14%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M RD +SW MI GY + G + E +FREM ++ ++ PD T+VSVL AC +
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEI 386
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G + ++ ++ IK D+ + NALI MY KCG + A+ + +M +D+ +++A+
Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAM------ 440
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+ GL N + + + + +MQ ++P+ +T +
Sbjct: 441 -------------------------VVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGV 475
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236
S +H + ++ + K R D I + ++D + G + A + +
Sbjct: 476 LSACNHSGMVDQARK---FFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532
Query: 237 -GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
+ I+W A++ A H D A ++L ++PD A+L
Sbjct: 533 MNPNSIVWGALLGASRLHNDEPMAELAAKKILE--LEPDNGAVYALL 577
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)
Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
G V A LF + P + WN +I G + + + L M GV P++ T +
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 182 S-LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ L L GK++H + VK N+YV A++ Y+ G + A+ VFDR +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
W +IS Y + +++ L EM N + P VT VLSAC+ D +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+S + +PS+ +V + + A M + W +++ G G+++
Sbjct: 262 VS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS-WTSIVKGYVERGNLK 319
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
L + D ++ + ++ IM + Y +AG ++E+ + +M+ +G+
Sbjct: 320 LARTYFD---QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 254/444 (57%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+S ++ +NS+I Y+ Y + +++++L PD T + ++C
Sbjct: 68 VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYL 127
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +VH + + + + NALI MY K L A + DEM ++D +S+++++SGY
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G ++KA LF +M + +W A+ISG + +D REMQ +G+ P+ +++ S+
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ +L+ GK IH YA + + + V A+I+ Y+K G + A ++F + +G+ +
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I W+ +IS YA HG+A A+ FNEM ++P+ +TF +LSAC+H G+ + F+
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M Y I+P +EHY C++ VL+RA ++ A E MP+KP +K+WG+LL G+++
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ DHL E+EPE+ GNY+++AN+Y+ G+W++ R+R+ ++ + K PG S IE +
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Query: 421 GGLQSFVAKDTSGDKSEQIYLILE 444
+Q FV+ D S +I ++L+
Sbjct: 488 NIVQEFVSGDNSKPFWTEISIVLQ 511
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
K+I+ + + ++ ++ T ++D K + A R+F++ ++ ++ +II AY +
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 254 GDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSG 289
+ ++ ++L + PD TF + +CA G
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLG 123
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 252/466 (54%), Gaps = 37/466 (7%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
+D+VSW +MIAGY+Q F ++ FR+ML+ + R D V + + + AC + G +
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGLTNAVSACAGLQALKEGQQ 612
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+H S DL NAL+ +Y++CG ++ + ++ D ++
Sbjct: 613 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA------------- 659
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
WNA++SG Q+ +E L + M G+ N T S
Sbjct: 660 ------------------WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
S +N+K GK++H K YD V A+I YAK G + A++ F ++ + W
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
AII+AY+ HG S+A+ F++M+++ ++P+ VT VLSAC+H GLVDK F +M+
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 821
Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
+YG+ P EHY C+V +L+RA +S A EF+ +MP+KP A VW LL + ++E+G+
Sbjct: 822 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 881
Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
F HL E+EPE++ Y++++NLY+ + +WD D R++MKE G+ K PG+SWIE +
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941
Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
SF D + +++I+ + L E GYV LL+E++ E
Sbjct: 942 HSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHE 987
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 38/362 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+RD V++N++I G SQ G+ E+ LF+ M + L PD T+ S++ AC +
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFR 407
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H + + + I AL+ +YAKC
Sbjct: 408 GQQLHAYTTKLGFASNNKIEGALLNLYAKCAD---------------------------- 439
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVIS--GLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+E A+D F + + WN ++ GL+ + R+ + R+MQ + PN T
Sbjct: 440 ---IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS--FRIFRQMQIEEIVPNQYTYP 494
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
SI +L+ G++IH +K + N YV + +ID YAK G L A + RF G+
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
++ WT +I+ Y + KA++ F +ML+ GI+ D V T +SACA + + I
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI- 613
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
+A + G + +V + SR +I E+ + + W AL+ G SG+
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSGFQQSGN 672
Query: 359 VE 360
E
Sbjct: 673 NE 674
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 165/353 (46%), Gaps = 34/353 (9%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
++V WN M+ Y +FR+M ++ P+ T S+L+ C + D+ G ++
Sbjct: 454 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCIRLGDLELGEQI 512
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H+ +I+++ +++ ++C+ LI MYAK G LD A +L + KD VS++ +I+GY + F
Sbjct: 513 HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFD 572
Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
+KA+ F R+M G+R + V +++ S
Sbjct: 573 DKALTTF-------------------------------RQMLDRGIRSDEVGLTNAVSAC 601
Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
+ LK G++IH A + + ++ A++ Y++ G + + F++ + I W
Sbjct: 602 AGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWN 661
Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
A++S + G+ +A+ +F M GI + TF + + A + + + + + +A+ +
Sbjct: 662 ALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITK 720
Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
G E ++ + ++ IS+A + ++ K W A++ S G
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG 772
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 159/361 (44%), Gaps = 37/361 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +R I +WN MI + E LF M++ V P+ T VL+AC + + F
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV-TPNEGTFSGVLEAC-RGGSVAF 203
Query: 61 GM--EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
+ ++H ++ ++ +CN LI +Y++ G +D AR + D + KD S
Sbjct: 204 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS-------- 255
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
W A+ISGL +N + L +M G+ P S
Sbjct: 256 -----------------------WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFS 292
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
S+ S +L+ G+++HG +K + + YV A++ Y G L A+ +F R
Sbjct: 293 SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 352
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
+ + +I+ + G KA+ LF M +G++PD T +++ AC+ G + + +
Sbjct: 353 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL- 411
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
+A + + G + + ++ + ++ I A ++ + V+ + +W +L + D
Sbjct: 412 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYGLLDD 470
Query: 359 V 359
+
Sbjct: 471 L 471
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 32/286 (11%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
+D SW +MI+G S+ E LF +M ++ P SVL AC + + G +
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIM-PTPYAFSSVLSACKKIESLEIGEQ 309
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+H V++ D ++CNAL+ +Y G+L A + MS +D V+Y
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY------------ 357
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
N +I+GL Q E ++L + M G+ P++ T++S+
Sbjct: 358 -------------------NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
S L G+++H Y K + N + A+++ YAK + A F + ++++W
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289
++ AY D + +F +M I P+ T+ ++L C G
Sbjct: 459 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 17/214 (7%)
Query: 83 LIGMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG 138
L G GSLD R L ++ D + + Y+ G + A +F M
Sbjct: 91 LEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERT 150
Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG----- 193
+ TWN +I L N V L M + V PN T S + +GG
Sbjct: 151 IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA------CRGGSVAFD 204
Query: 194 --KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA 251
++IH + + V +ID Y++ GF+ A+RVFD + + W A+IS +
Sbjct: 205 VVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264
Query: 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
+ ++A+ LF +M GI P P F++VLSAC
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 298
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+S ++ VSWN++I YS+ GF E F +M++S V RP+ VT+V VL AC +
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV-RPNHVTLVGVLSACSHIGLVDK 811
Query: 61 GM---EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIIS 116
G+ E N K + ++C ++ M + G L A+ + EM K D + + ++S
Sbjct: 812 GIAYFESMNSEYGLSPKPEHYVC--VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869
Query: 117 GYMVHGFVE----KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE-MQASGVR 171
+VH +E A L ++ P S ++S L ++ DL R+ M+ GV+
Sbjct: 870 ACVVHKNMEIGEFAAHHLLEL--EPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVK 927
Query: 172 --PNAVTI---SSIFSLFSHFSNLKGGKEIHGY 199
P I +SI S + N EIH Y
Sbjct: 928 KEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 960
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/527 (31%), Positives = 274/527 (51%), Gaps = 72/527 (13%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+ D V+WN MI+GY Q G EE F EM++S VL PD +T S+L + + ++ +
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL-PDAITFSSLLPSVSKFENLEY 358
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAK-------------CGSLDYA----------- 96
++H +++ I +D+++ +ALI Y K C S+D
Sbjct: 359 CKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLH 418
Query: 97 -----------RALLDEMSDKDEVSYSAIIS----------GYMVHGFVEK--------- 126
R L+ +E++ +I+ G +HGF+ K
Sbjct: 419 NGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI 478
Query: 127 ----------------AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170
A ++F+ + + + +WN++I+ Q++ A +D+ R+M SG+
Sbjct: 479 GCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGI 538
Query: 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230
+ V+IS+ S ++ + GK IHG+ +K+ ++Y + +ID YAK G L A
Sbjct: 539 CYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMN 598
Query: 231 VFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSG 289
VF K ++++ W +II+A HG ++ LF+EM+ +GI+PD +TF ++S+C H G
Sbjct: 599 VFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVG 658
Query: 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349
VD+ F +M+ YGIQP EHYAC+V + RA R++EA E V MP P A VWG L
Sbjct: 659 DVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTL 718
Query: 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409
L + +VEL + L +++P N+G Y++++N ++ A W+ +VR MKE +
Sbjct: 719 LGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQ 778
Query: 410 KIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
KIPG SWIE + FV+ D + +S IY +L LLG +R EGY+
Sbjct: 779 KIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYI 825
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 32/280 (11%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
++D V WN M+ GY++ G + F M + P+ VT VL C I G+
Sbjct: 201 QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQI-SPNAVTFDCVLSVCASKLLIDLGV 259
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
++H V+ S + + I N+L+ MY+KCG D
Sbjct: 260 QLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD---------------------------- 291
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
A LF++M R TWN +ISG VQ+ E L EM +SGV P+A+T SS+
Sbjct: 292 ---DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLP 348
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
S F NL+ K+IH Y +++ +I++ +A+ID Y K + AQ +F + +++
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
+TA+IS Y +G ++ +F ++ I P+ +T ++L
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 35/315 (11%)
Query: 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107
+LQAC + + G +VH F+I + I D + ++GMYA CGS SD
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSF----------SDCG 90
Query: 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167
++ Y +DL +R + WN++IS V+N L +M
Sbjct: 91 KMFYR---------------LDL----RRSSIRPWNSIISSFVRNGLLNQALAFYFKMLC 131
Query: 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227
GV P+ T + N KG + D N +VA+++I Y + G +
Sbjct: 132 FGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDV 191
Query: 228 AQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
++FDR + +IW +++ YA G + F+ M + I P+ VTF VLS CA
Sbjct: 192 PSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251
Query: 288 SGLVDKAWDIFN--AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKV 345
L+D + +SG + S+++ ++ + S+ R +A++ +M +
Sbjct: 252 KLLIDLGVQLHGLVVVSG-VDFEGSIKNS--LLSMYSKCGRFDDASKLF-RMMSRADTVT 307
Query: 346 WGALLYGASISGDVE 360
W ++ G SG +E
Sbjct: 308 WNCMISGYVQSGLME 322
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ + I WNS+I+ + + G + A + +ML V PD T +++AC
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV-SPDVSTFPCLVKAC-------- 148
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS-DKDEVSYSAIISGYM 119
+ + NF +D+ + + D +E S++I Y+
Sbjct: 149 -VALKNF-----------------------KGIDFLSDTVSSLGMDCNEFVASSLIKAYL 184
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
+G ++ LF + + WN +++G + ++V+ M+ + PNAVT
Sbjct: 185 EYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDC 244
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
+ S+ + + G ++HG V + D + +++ Y+K G A ++F
Sbjct: 245 VLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRAD 304
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
+ W +IS Y G ++++ F EM+++G+ PD +TF+++L +
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 266/466 (57%), Gaps = 8/466 (1%)
Query: 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
N+M + Y + G E +F M++S V RPD ++++S + +C Q +I++G H +V+
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGV-RPDRISMLSAISSCSQLRNILWGKSCHGYVL 364
Query: 70 ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
+ + ICNALI MY KC D A + D MS+K V++++I++GY+ +G V+ A +
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424
Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFS 188
F+ M + +WN +ISGLVQ + E +++ MQ+ GV + VT+ SI S H
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
L K I+ Y KN ++ + T ++D +++ G A +F+ R + WTA I
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544
Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308
A A G+A +A+ LF++M+ G++PD V F L+AC+H GLV + +IF +M +G+
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604
Query: 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368
P HY CMV +L RA + EA + + MP++P+ +W +LL + G+VE+ + +
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK 664
Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVA 428
+ + PE TG+Y++++N+Y+ AGRW++ +VR MKE GL K PG S I+ G F +
Sbjct: 665 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTS 724
Query: 429 KDTSGDKSEQIYLILERL------LGLMREEGYVLLDEVEEESAYV 468
D S + I +L+ + LG + + VL+D E+E ++
Sbjct: 725 GDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFM 770
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 35/308 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+R++VSW SMI GY++ F ++ LF M+ + P+ VT+V V+ AC + D+
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +V+ F+ S I+++ + +AL+ MY KC ++D A+ L DE + +A+ S Y+
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G +A+ +F + M SGVRP+ +++ S
Sbjct: 315 QGLTREALGVFNL-------------------------------MMDSGVRPDRISMLSA 343
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S S N+ GK HGY ++N ++ + A+ID Y K A R+FDR +++
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W +I++ Y +G+ A F M I V++ ++S L ++A ++F +
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCS 459
Query: 301 MSGQYGIQ 308
M Q G+
Sbjct: 460 MQSQEGVN 467
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 148/279 (53%), Gaps = 31/279 (11%)
Query: 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
+NS+I GY+ G E LF M+NS + PD T L AC +S G+++H +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGI-SPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 69 IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128
++ DL++ N+L+ YA+CG LD AR + DEMS+++ VS++++I GY F + A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 129 DLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188
DLF +VR+ + V PN+VT+ + S +
Sbjct: 221 DLF---------------------------FRMVRDEE---VTPNSVTMVCVISACAKLE 250
Query: 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248
+L+ G++++ + + + N + +A++D Y K + A+R+FD + +L + A+ S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310
Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
Y G +A+ +FN M+++G++PD ++ + +S+C+
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 188 SNLKGGKEI------HGYAVKNRYDRNIYVATAIIDTYAKTGF---LHGAQRVFDRFKGR 238
S+LK K I H K D ++ T ++ + G L A+ VF+ +
Sbjct: 37 SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESY 96
Query: 239 -SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS--------- 288
+ ++ ++I YA+ G ++A+ LF M+N+GI PD TF LSACA S
Sbjct: 97 GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156
Query: 289 -GLVDK---AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327
GL+ K A D+F +Q S+ H+ G L AR++
Sbjct: 157 HGLIVKMGYAKDLF--------VQNSLVHFYAECGELDSARKV 191
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 258/451 (57%), Gaps = 5/451 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+S ++ + +MI G+ G + +L+ M+++ VL PD + SVL+AC D+
Sbjct: 87 VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVL-PDNYVITSVLKAC----DLKV 141
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
E+H V++ + ++ +Y K G L A+ + DEM D+D V+ + +I+ Y
Sbjct: 142 CREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSE 201
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
GF+++A++LFQ +K W A+I GLV+N L+L REMQ V N T +
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S S L+ G+ +H + R + + +V A+I+ Y++ G ++ A+RVF + + +
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I + +IS A HG + +A++ F +M+N G +P+ VT A+L+AC+H GL+D ++FN+
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M + ++P +EHY C+V +L R R+ EA F+ +P++P + G LL I G++E
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LG+ + LFE E ++G Y++++NLY+ +G+W E+ +RE M++SG+ K PG S IE
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
+ F+ D + E IY L+ L ++R
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILR 532
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 97/422 (22%), Positives = 179/422 (42%), Gaps = 65/422 (15%)
Query: 29 FREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87
FR +S LR T++SVL++C +I +H +I + D ++ LI +
Sbjct: 15 FRRDPDSNTLRLSRRKTLISVLRSC---KNIAHVPSIHAKIIRTFHDQDAFVVFELIRVC 71
Query: 88 AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS 147
+ S+DYA + +S+ + Y+A+I G++ G + L+ M + N VI+
Sbjct: 72 STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSI----FSLFSHFSNLKGGKEIHGYAVKN 203
+++ L + RE+ A ++ + S+ ++ L K++
Sbjct: 132 SVLK----ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKM----FDE 183
Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
DR+ AT +I+ Y++ GF+ A +F K + + WTA+I + + +KA+ LF
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243
Query: 264 NEMLNNGIQPDPVTFTAVLSACA-----------HS------------------------ 288
EM + + T VLSAC+ HS
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRC 303
Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL----SRARRISEATEFVSKMPVKPSAK 344
G +++A +F M + V Y M+ L + I+E + V++ +P+
Sbjct: 304 GDINEARRVFRVMRDK-----DVISYNTMISGLAMHGASVEAINEFRDMVNR-GFRPNQV 357
Query: 345 VWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
ALL S G +++G V + + F +EP+ +Y + +L + GR +EA R E
Sbjct: 358 TLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQ-IEHYGCIVDLLGRVGRLEEAYRFIE 416
Query: 402 QM 403
+
Sbjct: 417 NI 418
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 261/478 (54%), Gaps = 46/478 (9%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
K D+V+W++ I+GY+Q G E + R+ML+S + +P+ VT++SVL C ++ G
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGCASVGALMHGK 385
Query: 63 EVHNFVIESHIKM-------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
E+H + I+ I + + + N LI MYAKC +D ARA+ D +S K+
Sbjct: 386 EIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKER------- 438
Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM--QASGVRPN 173
+ TW +I G Q+ L+L+ EM + RPN
Sbjct: 439 ----------------------DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476
Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVF 232
A TIS + + L+ GK+IH YA++N+ + ++V+ +ID YAK G + A+ VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
D ++ + WT++++ Y HG +A+ +F+EM G + D VT VL AC+HSG++D
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
+ + FN M +G+ P EHYAC+V +L RA R++ A + +MP++P VW A L
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656
Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
I G VELG++ + + E+ + G+Y +++NLY+ AGRW + R+R M+ G+ K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716
Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLIL----ERL--LGLMREEGYVLLDEVEEE 464
G SW+E G +F D + +++IY +L +R+ +G + E G+ L D +EE
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEE 774
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 215/458 (46%), Gaps = 59/458 (12%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS D+VSWNS+I Y++ G + +F M N RPD +T+V+VL C
Sbjct: 188 MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSL 247
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H F + S + ++++ N L+ MYAKCG +D A + MS KD VS++A+++GY
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307
Query: 121 HGFVEKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
G E A+ LF+ M+ + TW+A ISG Q L + R+M +SG++PN VT
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367
Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAV-------KNRYDRNIYVATAIIDTYAKTGFLHGAQ 229
+ S+ S + L GKEIH YA+ KN + V +ID YAK + A+
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427
Query: 230 RVFDRF--KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT--AVLSAC 285
+FD K R ++ WT +I Y+ HGDA+KA+ L +EM Q P FT L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487
Query: 286 AHSGL--VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA 343
A + K + + Q + V + C++ + ++ IS+A M K
Sbjct: 488 ASLAALRIGKQIHAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDARLVFDNMMAKNEV 545
Query: 344 KVWGALL--YGASISGDVELGKF--------------------VCDH------------- 368
W +L+ YG G+ LG F C H
Sbjct: 546 -TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604
Query: 369 ---LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403
+F + P +Y + +L +AGR + A R+ E+M
Sbjct: 605 MKTVFGVSP-GPEHYACLVDLLGRAGRLNAALRLIEEM 641
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 185/432 (42%), Gaps = 49/432 (11%)
Query: 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
S + WNS+I Y G +C LF +++S PD T V +ACG+ S + G
Sbjct: 88 SDAGVYHWNSLIRSYGDNGCANKCLYLF-GLMHSLSWTPDNYTFPFVFKACGEISSVRCG 146
Query: 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
H + + ++++ NAL+ MY++C SL AR + DEMS D VS+++II Y
Sbjct: 147 ESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKL 206
Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
G + A+++F R G RP+ +T+ ++
Sbjct: 207 GKPKVALEMFS------------------------------RMTNEFGCRPDNITLVNVL 236
Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
+ GK++H +AV + +N++V ++D YAK G + A VF + ++
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296
Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
W A+++ Y+ G AV LF +M I+ D VT++A +S A GL +A + M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356
Query: 302 SGQYGIQP------SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAK-------VWGA 348
GI+P SV VG L + I + K P+ V
Sbjct: 357 LSS-GIKPNEVTLISVLSGCASVGALMHGKEIH---CYAIKYPIDLRKNGHGDENMVINQ 412
Query: 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
L+ + V+ + + D L E + + +M YSQ G ++A + +M E
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKE-RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDC 471
Query: 409 AKIPGRSWIECS 420
P I C+
Sbjct: 472 QTRPNAFTISCA 483
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/468 (35%), Positives = 259/468 (55%), Gaps = 39/468 (8%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
+D+VSWN+MI+GY++ G Y+E LF++M+ + V RPD T+V+V+ AC QS I G +
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACAQSGSIELGRQ 287
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
VH ++ + +L I NALI +Y+KCG L+ A L + + KD +
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI-------------- 333
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
+WN +I G N ++ L L +EM SG PN VT+ SI
Sbjct: 334 -----------------SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 184 FSHFSNLKGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
+H + G+ IH Y K + T++ID YAK G + A +VF+ +SL
Sbjct: 377 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436
Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
W A+I +A HG A + LF+ M GIQPD +TF +LSAC+HSG++D IF M
Sbjct: 437 SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496
Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
+ Y + P +EHY CM+ +L + EA E ++ M ++P +W +LL + G+VEL
Sbjct: 497 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVEL 556
Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
G+ ++L +IEPEN G+Y++++N+Y+ AGRW+E + R + + G+ K+PG S IE
Sbjct: 557 GESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDS 616
Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
+ F+ D ++ +IY +LE + L+ + G+V +L E+EEE
Sbjct: 617 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 206/408 (50%), Gaps = 6/408 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ + +++ WN+M G++ L+ M++ +L P+ T VL++C +S
Sbjct: 94 IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSCAKSKAFKE 152
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H V++ +DL++ +LI MY + G L+ A + D+ +D VSY+A+I GY
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G++E A LF + + +WNA+ISG + ++ L+L ++M + VRP+ T+ ++
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + +++ G+++H + + + N+ + A+ID Y+K G L A +F+R + +
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDV 332
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I W +I Y +A+ LF EML +G P+ VT ++L ACAH G +D I
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 301 MSGQY-GIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG-- 357
+ + G+ + ++ + ++ I A + + + + S W A+++G ++ G
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRA 451
Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
D F I+P++ ++ + + S +G D + M +
Sbjct: 452 DASFDLFSRMRKIGIQPDDI-TFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 33/257 (12%)
Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
A+ +F+ ++ P L WN + G ++ + L L M + G+ PN+ T + +
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVA-------------------------------TAI 215
K G++IHG+ +K D ++YV TA+
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
I YA G++ AQ++FD + ++ W A+IS YA G+ +A+ LF +M+ ++PD
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
T V+SACA SG ++ + + +G +++ ++ + S+ + A
Sbjct: 267 STMVTVVSACAQSGSIELGRQV-HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325
Query: 336 KMPVKPSAKVWGALLYG 352
++P K W L+ G
Sbjct: 326 RLPYK-DVISWNTLIGG 341
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/474 (34%), Positives = 257/474 (54%), Gaps = 42/474 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ +R IVSW ++++ Y+Q G E +F +M V +PD V +VSVL A D+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV-KPDWVALVSVLNAFTCLQDLKQ 240
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H V++ ++++ + +L MYAKCG + A+ L D+M
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM----------------- 283
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
K P L WNA+ISG +N +D+ EM VRP+ ++I+S
Sbjct: 284 --------------KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + +L+ + ++ Y ++ Y ++++++A+ID +AK G + GA+ VFDR R +
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
++W+A+I Y HG A +A+SL+ M G+ P+ VTF +L AC HSG+V + W FN
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNR 449
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ + I P +HYAC++ +L RA + +A E + MPV+P VWGALL VE
Sbjct: 450 MA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LG++ LF I+P NTG+Y+ ++NLY+ A WD VR +MKE GL K G SW+E
Sbjct: 509 LGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV---------LLDEVEEES 465
G L++F D S + E+I +E + ++E G+V L DE EE+
Sbjct: 569 GRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 177/359 (49%), Gaps = 36/359 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ + I WN++I GYS+ +++ ++ M + V PD T +L+AC S +
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV-SPDSFTFPHLLKACSGLSHLQM 137
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLD--EMSDKDEVSYSAIISGY 118
G VH V D+++ N LI +YAKC L AR + + + ++ VS++AI+S Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+G +A+++F +M+ V+P+ V +
Sbjct: 198 AQNGEPMEALEIFS-------------------------------QMRKMDVKPDWVALV 226
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
S+ + F+ +LK G+ IH VK + + ++ YAK G + A+ +FD+ K
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSP 286
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
+LI+W A+IS YA +G A +A+ +F+EM+N ++PD ++ T+ +SACA G +++A ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
+ G+ + V + ++ + ++ + E V + VW A++ G + G
Sbjct: 347 EYV-GRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 130/257 (50%), Gaps = 11/257 (4%)
Query: 109 VSYSAIISGYMVH-----GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVR 163
+ +S + ++H G + A +F + RP + WNA+I G +NN + L +
Sbjct: 49 LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108
Query: 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223
MQ + V P++ T + S S+L+ G+ +H + +D +++V +I YAK
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR 168
Query: 224 FLHGAQRVFD--RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
L A+ VF+ R+++ WTAI+SAYA +G+ +A+ +F++M ++PD V +V
Sbjct: 169 RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSV 228
Query: 282 LSACAHSGLVD-KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
L+ A + L D K +A + G++ + + + ++ +++ A KM
Sbjct: 229 LN--AFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-S 285
Query: 341 PSAKVWGALLYGASISG 357
P+ +W A++ G + +G
Sbjct: 286 PNLILWNAMISGYAKNG 302
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 256/457 (56%), Gaps = 4/457 (0%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD+VSWN+M+ GY+Q G E ++E S + + + + +L AC +S +
Sbjct: 139 MPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGI-KFNEFSFAGLLTACVKSRQLQL 197
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
+ H V+ + ++ + ++I YAKCG ++ A+ DEM+ KD ++ +ISGY
Sbjct: 198 NRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAK 257
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G +E A LF M +W A+I+G V+ LDL R+M A GV+P T SS
Sbjct: 258 LGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSC 317
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-S 239
+ ++L+ GKEIHGY ++ N V +++ID Y+K+G L ++RVF +
Sbjct: 318 LCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHD 377
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
+ W +ISA A HG KA+ + ++M+ +QP+ T +L+AC+HSGLV++ F
Sbjct: 378 CVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFE 437
Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
+M+ Q+GI P EHYAC++ +L RA E + +MP +P +W A+L I G+
Sbjct: 438 SMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNE 497
Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
ELGK D L +++PE++ YI+++++Y+ G+W+ +++R MK+ + K SWIE
Sbjct: 498 ELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEI 557
Query: 420 SGGLQSFVAKDTS--GDKSEQIYLILERLLGLMREEG 454
+++F D S + E+IY IL L ++ EE
Sbjct: 558 EKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 186/374 (49%), Gaps = 17/374 (4%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
KR I S ++ ++ E +A+ R E L +R + S+LQ CG + + G
Sbjct: 8 KRPICVAQSFLSKHATKA--ELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQG 65
Query: 62 MEVHNFV-IESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
+H + I + + + N LIGMY KCG A + D+M ++ S++ ++SGY+
Sbjct: 66 KWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVK 125
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVREMQASGVRPNAVTISS 179
G + +A +F M + +WN ++ G Q+ N HEA L +E + SG++ N + +
Sbjct: 126 SGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEA-LWFYKEFRRSGIKFNEFSFAG 184
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
+ + L+ ++ HG + + N+ ++ +IID YAK G + A+R FD +
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
+ IWT +IS YA GD A LF EM + +PV++TA+++ G ++A D+F
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEM----PEKNPVSWTALIAGYVRQGSGNRALDLFR 300
Query: 300 AMSGQYGIQPSVEHYA---CMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356
M G++P ++ C ++ R E ++ + V+P+A V +L+ S S
Sbjct: 301 KMIA-LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKS 359
Query: 357 GDVELGKFV---CD 367
G +E + V CD
Sbjct: 360 GSLEASERVFRICD 373
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 266/476 (55%), Gaps = 42/476 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
+ KR+IVSW SMI GY G + +LF+++L + + D + +VSV+ AC +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 56 SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS--LDYARALLDEMSDKDEVSYSA 113
+H+FVI+ + + N L+ YAK G + AR + D++ DKD VSY++
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
I+S Y G +A ++F+ + + + T+NA+
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI---------------------------- 288
Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
T+S++ SH L+ GK IH ++ + ++ V T+IID Y K G + A++ FD
Sbjct: 289 --TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346
Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
R K +++ WTA+I+ Y HG A+KA+ LF M+++G++P+ +TF +VL+AC+H+GL +
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406
Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
W FNAM G++G++P +EHY CMV +L RA + +A + + +M +KP + +W +LL
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAAC 466
Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
I +VEL + LFE++ N G Y++++++Y+ AGRW + +RVR MK GL K PG
Sbjct: 467 RIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPG 526
Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
S +E +G + F+ D + E+IY L L + E GYV + +V+EE
Sbjct: 527 FSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 171/360 (47%), Gaps = 31/360 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ K D+ SWNS+IA ++ G E F M L P + ++AC DI
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSM-RKLSLYPTRSSFPCAIKACSSLFDIFS 94
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G + H + D+++ +ALI MY+ CG L+ AR + DE+ ++ VS++++I GY +
Sbjct: 95 GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+G A+ LF+ + LV N + + L +++ + S+
Sbjct: 155 NGNALDAVSLFKDL--------------LVDENDDDDAMFL-----------DSMGLVSV 189
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK--TGFLHGAQRVFDRFKGR 238
S S + IH + +K +DR + V ++D YAK G + A+++FD+ +
Sbjct: 190 ISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK 249
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDI 297
+ + +I+S YA G +++A +F ++ N + + +T + VL A +HSG + I
Sbjct: 250 DRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCI 309
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
+ + + G++ V ++ + + R+ A + +M K + + W A++ G + G
Sbjct: 310 HDQVI-RMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-NVRSWTAMIAGYGMHG 367
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 143/325 (44%), Gaps = 60/325 (18%)
Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPN----AVTISSIFSLFSHFSNLKGGKEI 196
+WN+VI+ L ++ L M+ + P I + SLF FS GK+
Sbjct: 43 SWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS----GKQT 98
Query: 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDA 256
H A Y +I+V++A+I Y+ G L A++VFD R+++ WT++I Y +G+A
Sbjct: 99 HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNA 158
Query: 257 SKAVSLFNEML------NNGIQPDPVTFTAVLSACA-----------HSGLVDKAWD--- 296
AVSLF ++L ++ + D + +V+SAC+ HS ++ + +D
Sbjct: 159 LDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGV 218
Query: 297 -IFNAMSGQYG-----------------IQPSVEHYACMVGVLSRARRISEATE----FV 334
+ N + Y + Y ++ V +++ +EA E V
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278
Query: 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAG 391
V +A +L S SG + +GK + D + + E+ G II ++Y + G
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII--DMYCKCG 336
Query: 392 RWDEADRVREQMKESGLAKIPGRSW 416
R + A + ++MK + RSW
Sbjct: 337 RVETARKAFDRMKNKNV-----RSW 356
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 295 bits (754), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 154/450 (34%), Positives = 258/450 (57%), Gaps = 36/450 (8%)
Query: 5 DIVSWNSMIAGYSQGGF---YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
D+V +N+MI GYS+ G E +FR+M ++RP +T VS+L+A + +
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHEALNIFRDM-RFRLIRPSLLTFVSLLRASASLTSLGLS 473
Query: 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
++H + + + +D++ +ALI +Y+ C L +R + DEM KD
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKD-------------- 519
Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
L WN++ +G VQ + +E L+L E+Q S RP+ T +++
Sbjct: 520 -----------------LVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMV 562
Query: 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
+ + ++++ G+E H +K + N Y+ A++D YAK G A + FD R ++
Sbjct: 563 TAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVV 622
Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
W ++IS+YA HG+ KA+ + +M++ GI+P+ +TF VLSAC+H+GLV+ F M
Sbjct: 623 CWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682
Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
++GI+P EHY CMV +L RA R+++A E + KMP KP+A VW +LL G + +G+VEL
Sbjct: 683 L-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVEL 741
Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421
+ + +P+++G++ +++N+Y+ G W EA +VRE+MK G+ K PGRSWI +
Sbjct: 742 AEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINK 801
Query: 422 GLQSFVAKDTSGDKSEQIYLILERLLGLMR 451
+ F++KD S K+ QIY +L+ LL +R
Sbjct: 802 EVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 206/438 (47%), Gaps = 65/438 (14%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++I+SW ++++GY Q ++E LF M + L+PD S+L +C + F
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSM-SKFGLKPDMYACSSILTSCASLHALGF 368
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +VH + I++++ D ++ N+LI MYAKC L AR + D + D V ++A+I GY
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G Q HEA L++ R+M+ +RP+ +T S+
Sbjct: 429 LG---------------------------TQWELHEA-LNIFRDMRFRLIRPSLLTFVSL 460
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ ++L K+IHG K + +I+ +A+ID Y+ L ++ VFD K + L
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSG 289
+IW ++ + Y + +A++LF E+ + +PD TF +++A H
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 290 LVDKAWD----IFNAMSGQYGI--QPSVEHYA----------CMVGVLSRARRISE---A 330
L+ + + I NA+ Y P H A C V+S E A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640
Query: 331 TEFVSKM---PVKPSAKVWGALLYGASISGDVE--LGKFVCDHLFEIEPENTGNYIIMAN 385
+ + KM ++P+ + +L S +G VE L +F F IEPE T +Y+ M +
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVS 699
Query: 386 LYSQAGRWDEADRVREQM 403
L +AGR ++A + E+M
Sbjct: 700 LLGRAGRLNKARELIEKM 717
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 37/290 (12%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC----GQSS 56
M +R++VSW++M++ + G YEE +F E + P+ + S +QAC G+
Sbjct: 105 MPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGR 164
Query: 57 DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116
+VF ++ +F+++S D+++ LI Y K G++DYAR + D + +K V
Sbjct: 165 WMVF--QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTV------- 215
Query: 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT 176
TW +ISG V+ R L L ++ V P+
Sbjct: 216 ------------------------TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYI 251
Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
+S++ S S L+GGK+IH + ++ + + + +ID+Y K G + A ++F+
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311
Query: 237 GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
+++I WT ++S Y + +A+ LF M G++PD +++L++CA
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 164/355 (46%), Gaps = 37/355 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ ++ V+W +MI+G + G LF +++ V+ PDG + +VL AC +
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVV-PDGYILSTVLSACSILPFLEG 267
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H ++ ++MD + N LI Y KCG + A L + M +K+ IIS
Sbjct: 268 GKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKN------IIS---- 317
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
W ++SG QN H+ ++L M G++P+ SSI
Sbjct: 318 ---------------------WTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSI 356
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + L G ++H Y +K + YV ++ID YAK L A++VFD F +
Sbjct: 357 LTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADV 416
Query: 241 IIWTAIISAYAAHG---DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
+++ A+I Y+ G + +A+++F +M I+P +TF ++L A A + + I
Sbjct: 417 VLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQI 476
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
M +YG+ + + ++ V S + ++ +M VK +W ++ G
Sbjct: 477 HGLMF-KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLV-IWNSMFAG 529
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 40/294 (13%)
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
VH +I +++D ++ N LI +Y++ G + YAR + ++M +++ VS+S ++S HG
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
E+++ +F L+ R + S PN +SS
Sbjct: 126 YEESLVVF---------------------------LEFWRTRKDS---PNEYILSS---F 152
Query: 184 FSHFSNLKG-GK----EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
S L G G+ ++ + VK+ +DR++YV T +ID Y K G + A+ VFD +
Sbjct: 153 IQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEK 212
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
S + WT +IS G + ++ LF +++ + + PD + VLSAC+ ++ I
Sbjct: 213 STVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQI- 271
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
+A +YG++ ++ + R+ A + + MP K + W LL G
Sbjct: 272 HAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNK-NIISWTTLLSG 324
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 295 bits (754), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 158/456 (34%), Positives = 243/456 (53%), Gaps = 32/456 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +D VSWNS+I+GY Q G E LF+ M+ + D +T + ++ + +D+ F
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE-QADHITYLMLISVSTRLADLKF 426
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H+ I+S I +DL + NALI MYAKCG + + + M D V
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTV----------- 475
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
TWN VIS V+ L + +M+ S V P+ T
Sbjct: 476 --------------------TWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT 515
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + + + GKEIH ++ Y+ + + A+I+ Y+K G L + RVF+R R +
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDV 575
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ WT +I AY +G+ KA+ F +M +GI PD V F A++ AC+HSGLVD+ F
Sbjct: 576 VTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEK 635
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M Y I P +EHYAC+V +LSR+++IS+A EF+ MP+KP A +W ++L SGD+E
Sbjct: 636 MKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDME 695
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ V + E+ P++ G I+ +N Y+ +WD+ +R+ +K+ + K PG SWIE
Sbjct: 696 TAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVG 755
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
+ F + D S +SE IY LE L LM +EGY+
Sbjct: 756 KNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYI 791
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 42/408 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M RD VS+N+MI GY + EE +F E L+ +PD +TV SVL+ACG D+
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ--FKPDLLTVSSVLRACGHLRDLSL 325
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
++N+++++ ++ + N LI +YAKCG + AR + + M KD VS+++IISGY+
Sbjct: 326 AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G + +AM LF++M ++ E QA + +T +
Sbjct: 386 SGDLMEAMKLFKMM--------------------------MIMEEQA-----DHITYLML 414
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S+ + ++LK GK +H +K+ ++ V+ A+ID YAK G + + ++F
Sbjct: 415 ISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDT 474
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W +ISA GD + + + +M + + PD TF L CA +I
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCC 534
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+ ++G + ++ ++ + S+ + ++ +M + W ++Y + G+ E
Sbjct: 535 LL-RFGYESELQIGNALIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGE 592
Query: 361 --LGKFVCDHLFEIEPENTGNYIIMANLY--SQAGRWDEADRVREQMK 404
L F I P++ + +A +Y S +G DE E+MK
Sbjct: 593 KALETFADMEKSGIVPDSV---VFIAIIYACSHSGLVDEGLACFEKMK 637
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 177/357 (49%), Gaps = 37/357 (10%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
+++ WNS+I +S+ G + E + ++ S V PD T SV++AC D G
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKV-SPDKYTFPSVIKACAGLFDAEMGDL 127
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
V+ +++ + DL++ NAL+ MY++ G L AR + DEM +D VS++++ISGY HG+
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
E+A++++ E++ S + P++ T+SS+
Sbjct: 188 YEEALEIYH-------------------------------ELKNSWIVPDSFTVSSVLPA 216
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
F + +K G+ +HG+A+K+ + + V ++ Y K A+RVFD R + +
Sbjct: 217 FGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSY 276
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM-S 302
+I Y ++V +F E L+ +PD +T ++VL AC H + A I+N M
Sbjct: 277 NTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLK 335
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
+ ++ +V + ++ V ++ + A + + M K + W +++ G SGD+
Sbjct: 336 AGFVLESTVRNI--LIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDL 389
Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 33/283 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M RD+VSWNS+I+GYS G+YEE ++ E+ NS ++ PD TV SVL A G +
Sbjct: 167 MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIV-PDSFTVSSVLPAFGNLLVVKQ 225
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H F ++S + + + N L+ MY K AR + DEM +D VSY+ +I GY+
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
VE+++ +F + L Q +P+ +T+SS+
Sbjct: 286 LEMVEESVRMF--------------LENLDQ------------------FKPDLLTVSSV 313
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
H +L K I+ Y +K + V +ID YAK G + A+ VF+ + +
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283
+ W +IIS Y GD +A+ LF M+ Q D +T+ ++S
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLIS 416
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 109/220 (49%), Gaps = 7/220 (3%)
Query: 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201
WN++I +N L+ +++ S V P+ T S+ + + + G ++ +
Sbjct: 74 WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133
Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261
++ +++V A++D Y++ G L A++VFD R L+ W ++IS Y++HG +A+
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193
Query: 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321
+++E+ N+ I PD T ++VL A + LV K + + + G+ V +V +
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNL-LVVKQGQGLHGFALKSGVNSVVVVNNGLVAMY 252
Query: 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
+ RR ++A +M V+ S Y I G ++L
Sbjct: 253 LKFRRPTDARRVFDEMDVRDSVS------YNTMICGYLKL 286
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-GRSLII 242
S SNL + IH + D + + + +ID Y+ + VF R +++ +
Sbjct: 14 LSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYL 73
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAM 301
W +II A++ +G +A+ + ++ + + PD TF +V+ ACA GL D + D+
Sbjct: 74 WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACA--GLFDAEMGDLVYEQ 131
Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
G + + +V + SR ++ A + +MPV+ W +L+ G S G E
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSHGYYE 189
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 246/456 (53%), Gaps = 32/456 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +R++VSWNSMI Y Q +E +F++ML+ V +P V+V+ L AC D+
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV-KPTDVSVMGALHACADLGDLER 355
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +H +E + ++ + N+LI MY KC +D A ++ ++ + VS
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS---------- 405
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
WNA+I G QN R L+ +M++ V+P+ T S+
Sbjct: 406 ---------------------WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSV 444
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + S K IHG +++ D+N++V TA++D YAK G + A+ +FD R +
Sbjct: 445 ITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHV 504
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
W A+I Y HG A+ LF EM I+P+ VTF +V+SAC+HSGLV+ F
Sbjct: 505 TTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYM 564
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M Y I+ S++HY MV +L RA R++EA +F+ +MPVKP+ V+GA+L I +V
Sbjct: 565 MKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVN 624
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ + LFE+ P++ G ++++AN+Y A W++ +VR M GL K PG S +E
Sbjct: 625 FAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIK 684
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
+ SF + T+ S++IY LE+L+ ++E GYV
Sbjct: 685 NEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYV 720
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 173/351 (49%), Gaps = 34/351 (9%)
Query: 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
V +++M+ G+++ ++ F M V P +L+ CG +++ G E+H
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDV-EPVVYNFTYLLKVCGDEAELRVGKEIHG 159
Query: 67 FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
+++S +DL+ L MYAKC ++ AR + D M ++D VS
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS---------------- 203
Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
WN +++G QN L++V+ M ++P+ +TI S+ S
Sbjct: 204 ---------------WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248
Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
+ GKEIHGYA+++ +D + ++TA++D YAK G L A+++FD R+++ W ++
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308
Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
I AY + + +A+ +F +ML+ G++P V+ L ACA G +++ I + +S + G
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI-HKLSVELG 367
Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
+ +V ++ + + + + A K+ + W A++ G + +G
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS-WNAMILGFAQNG 417
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 201/440 (45%), Gaps = 85/440 (19%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD+VSWN+++AGYSQ G + + M L+P +T+VSVL A I
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN-LKPSFITIVSVLPAVSALRLISV 254
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G E+H + + S + I AL+ MYAKCGSL+ AR L D M +++ VS++++I Y+
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+ ++AM +FQ M LD GV+P V++
Sbjct: 315 NENPKEAMLIFQKM------------------------LD-------EGVKPTDVSVMGA 343
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ +L+ G+ IH +V+ DRN+ V ++I Y K + A +F + + R+L
Sbjct: 344 LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 403
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
+ W A+I +A +G A++ F++M + ++PD T+ +V++A A
Sbjct: 404 VSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGV 463
Query: 288 -------------SGLVDK---------AWDIFNAMSGQYGIQPSVEHYACMV---GVLS 322
+ LVD A IF+ MS ++ V + M+ G
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----VTTWNAMIDGYGTHG 518
Query: 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------ 376
+ E E + K +KP+ + +++ S SG VE G C F + EN
Sbjct: 519 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG-LKC---FYMMKENYSIELS 574
Query: 377 TGNYIIMANLYSQAGRWDEA 396
+Y M +L +AGR +EA
Sbjct: 575 MDHYGAMVDLLGRAGRLNEA 594
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 148/347 (42%), Gaps = 41/347 (11%)
Query: 89 KCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNA 144
+C SL R +L + ++ + ++S + +G V++A +F+ + ++
Sbjct: 46 RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105
Query: 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204
++ G + + + L M+ V P + + + + L+ GKEIHG VK+
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFN 264
+ +++ T + + YAK ++ A++VFDR R L+ W I++ Y+ +G A A+ +
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225
Query: 265 EMLNNGIQPDPVTFTAVLSACAHSGLV---------------DKAWDIFNAMSGQYG--- 306
M ++P +T +VL A + L+ D +I A+ Y
Sbjct: 226 SMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG 285
Query: 307 ------------IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPS-AKVWGALL 350
++ +V + M+ + EA KM VKP+ V GAL
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345
Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397
A + GD+E G+F+ H +E N ++ +L S + E D
Sbjct: 346 ACADL-GDLERGRFI--HKLSVELGLDRNVSVVNSLISMYCKCKEVD 389
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 6/189 (3%)
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
L S+LK ++I KN + + T ++ + + G + A RVF+ + ++
Sbjct: 43 LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
+ ++ +A D KA+ F M + ++P FT +L C + +I + +
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEI-HGLL 161
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG----D 358
+ G + + + ++ R+++EA + +MP + W ++ G S +G
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAGYSQNGMARMA 220
Query: 359 VELGKFVCD 367
+E+ K +C+
Sbjct: 221 LEMVKSMCE 229
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 260/469 (55%), Gaps = 14/469 (2%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M+ RD+VSWN++I GY+Q G +E + LF E SPV D T +++ Q+ +
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDE---SPV--QDVFTWTAMVSGYIQNRMVEE 299
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
E+ + + E + W NA++ Y + ++ A+ L D M ++ +++ +I+GY
Sbjct: 300 ARELFDKMPERNEVS--W--NAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQ 355
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G + +A +LF M + +W A+I+G Q+ L L +M+ G R N + SS
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + L+ GK++HG VK Y+ +V A++ Y K G + A +F G+ +
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 475
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W +I+ Y+ HG A+ F M G++PD T AVLSAC+H+GLVDK F
Sbjct: 476 VSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ YG+ P+ +HYACMV +L RA + +A + MP +P A +WG LL + + G+ E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + D +F +EPEN+G Y++++NLY+ +GRW + ++R +M++ G+ K+PG SWIE
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
+F D + ++I+ LE L M++ GY V+L +VEEE
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE 704
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 21/327 (6%)
Query: 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS 140
N +I Y + G + AR L DEM ++D VS++ +I GY+ + + KA +LF++M +
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
+WN ++SG QN +D R + N V+ +++ S + S + E
Sbjct: 159 SWNTMLSGYAQN----GCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKM----EEACML 210
Query: 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260
K+R + + ++ + K + A++ FD R ++ W II+ YA G +A
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270
Query: 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320
LF+E + +Q D T+TA++S + +V++A ++F+ M + + + M+
Sbjct: 271 QLFDE---SPVQ-DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAG 321
Query: 321 LSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380
+ R+ A E MP + + W ++ G + G + K + D + + +P ++
Sbjct: 322 YVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV---SW 377
Query: 381 IIMANLYSQAGRWDEADRVREQMKESG 407
M YSQ+G EA R+ QM+ G
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREG 404
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 156/357 (43%), Gaps = 58/357 (16%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M + VS+N MI+GY + G +E + LF EM P+ V + G +
Sbjct: 90 MPRWSSVSYNGMISGYLRNGEFELARKLFDEM-------PERDLVSWNVMIKGYVRNRNL 142
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G F I + W N ++ YA+ G +D AR++ D M +K++VS++A++S Y+
Sbjct: 143 GKARELFEIMPERDVCSW--NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+ +E+A LF+ + L +WN ++ G V+ + M
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV------------- 247
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
R++ II YA++G + A+++FD + +
Sbjct: 248 --------------------------RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV 281
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
WTA++S Y + +A LF++M + + V++ A+L+ ++ A ++F+
Sbjct: 282 FTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEMAKELFDV 337
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
M + +V + M+ ++ +ISEA KMP K W A++ G S SG
Sbjct: 338 MPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSG 388
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 138/327 (42%), Gaps = 46/327 (14%)
Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
D D ++ IS YM G +A+ +F+ M R ++N +ISG ++N E L E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
M P +S + + N GK + + +R++ ++ YA+ G
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERDVCSWNTMLSGYAQNGC 172
Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF-----------NEMLNNGIQP 273
+ A+ VFDR ++ + W A++SAY + +A LF N +L ++
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232
Query: 274 ----------------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
D V++ +++ A SG +D+A +F+ Q V + M
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-----DVFTWTAM 287
Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP-EN 376
V + R + EA E KMP + W A+L G +E+ K LF++ P N
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNEVS-WNAMLAGYVQGERMEMAK----ELFDVMPCRN 342
Query: 377 TGNYIIMANLYSQAGRWDEADRVREQM 403
+ M Y+Q G+ EA + ++M
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKM 369
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/493 (33%), Positives = 272/493 (55%), Gaps = 28/493 (5%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKAL-----FREMLNSPVLRPDGVTVVSVLQACGQS 55
M +R+ SWN++I G+S+ +E KAL F EM++ + P+ T SVL+AC ++
Sbjct: 85 MPQRNCFSWNTIIRGFSES---DEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141
Query: 56 SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDE---------MSDK 106
I G ++H ++ D ++ + L+ MY CG + AR L + M+D+
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201
Query: 107 DE-----VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
+ V ++ +I GYM G + A LF M++ + +WN +ISG N + +++
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261
Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
REM+ +RPN VT+ S+ S +L+ G+ +H YA + + + +A+ID Y+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321
Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281
G + A VF+R ++I W+A+I+ +A HG A A+ F +M G++P V + +
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381
Query: 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341
L+AC+H GLV++ F+ M G++P +EHY CMV +L R+ + EA EF+ MP+KP
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441
Query: 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401
+W ALL + G+VE+GK V + L ++ P ++G Y+ ++N+Y+ G W E +R
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 402 QMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY------ 455
+MKE + K PG S I+ G L FV +D S K+++I +L + +R GY
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ 561
Query: 456 VLLDEVEEESAYV 468
VLL+ EE+ V
Sbjct: 562 VLLNLEEEDKENV 574
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 243/411 (59%), Gaps = 4/411 (0%)
Query: 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98
+PD T VL+ + SD+ FG ++H V+ + + LI MY CG L AR
Sbjct: 113 KPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARK 172
Query: 99 LLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK---RPGLSTWNAVISGLVQNNRH 155
+ DEM KD ++A+++GY G +++A L ++M R +S W VISG ++ R
Sbjct: 173 MFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVS-WTCVISGYAKSGRA 231
Query: 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAI 215
+++ + M V P+ VT+ ++ S + +L+ G+ I Y +R + + A+
Sbjct: 232 SEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAV 291
Query: 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP 275
ID YAK+G + A VF+ R+++ WT II+ A HG ++A+++FN M+ G++P+
Sbjct: 292 IDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351
Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335
VTF A+LSAC+H G VD +FN+M +YGI P++EHY CM+ +L RA ++ EA E +
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411
Query: 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395
MP K +A +WG+LL +++ D+ELG+ L ++EP N+GNY+++ANLYS GRWDE
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDE 471
Query: 396 ADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERL 446
+ +R MK G+ K+ G S IE + F++ D + + E+I+ IL+ +
Sbjct: 472 SRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEM 522
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 160/382 (41%), Gaps = 75/382 (19%)
Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV---QNNRHEAVLDL 161
++D ++ + I G + A +F P N +I L + N H + +
Sbjct: 44 NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITV 103
Query: 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221
R++ A +P+ T + + S++ G++IHG V +D +++V T +I Y
Sbjct: 104 YRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFS 163
Query: 222 TGFLHGAQRVFDRFKGRSLIIWTAII---------------------------------S 248
G L A+++FD + + +W A++ S
Sbjct: 164 CGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVIS 223
Query: 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA----------------HSGLVD 292
YA G AS+A+ +F ML ++PD VT AVLSACA H G+ +
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGM-N 282
Query: 293 KAWDIFNAMSGQYG----IQPSVEHYAC-----------MVGVLSRARRISEATEFVSKM 337
+A + NA+ Y I +++ + C ++ L+ +EA ++M
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 338 ---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGNYIIMANLYSQAG 391
V+P+ + A+L S G V+LGK + + + + I P N +Y M +L +AG
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHP-NIEHYGCMIDLLGRAG 401
Query: 392 RWDEADRVREQMKESGLAKIPG 413
+ EAD V + M A I G
Sbjct: 402 KLREADEVIKSMPFKANAAIWG 423
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 130/275 (47%), Gaps = 40/275 (14%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
R+ VSW +I+GY++ G E +F+ ML V PD VT+++VL AC + G
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMENV-EPDEVTLLAVLSACADLGSLELGER 271
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+ ++V + + + NA+I MYAK G++ A + + +++++ V+++ II+G HG
Sbjct: 272 ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGH 331
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
+A+ +F NR M +GVRPN VT +I S
Sbjct: 332 GAEALAMF---------------------NR----------MVKAGVRPNDVTFIAILSA 360
Query: 184 FSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAIIDTYAKTGFLHGAQRVFDR--FKGRS 239
SH + GK + +++++Y NI +ID + G L A V FK +
Sbjct: 361 CSHVGWVDLGKRLFN-SMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANA 419
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
IW ++++A H D +E++ ++P+
Sbjct: 420 -AIWGSLLAASNVHHDLELGERALSELIK--LEPN 451
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 29/250 (11%)
Query: 171 RPNAVTISS-----IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
R NA+++SS + SL H +NLK K+ H Y + +R+ I+ + G L
Sbjct: 4 RINALSLSSGLNWFVTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHL 63
Query: 226 HGAQRVF------DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279
A VF + + ++I +++ AH S A++++ ++ +PD TF
Sbjct: 64 RYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH---SIAITVYRKLWALCAKPDTFTFP 120
Query: 280 AVLSACAHSGLVDKAWDIFNAMSGQ---YGIQPSVEHYACMVGVLSRARRISEATEFVSK 336
VL V W + GQ +G SV ++ + + +A + +
Sbjct: 121 FVLKIAVR---VSDVW-FGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDE 176
Query: 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP---ENTGNYIIMANLYSQAGRW 393
M VK VW ALL G G+++ + L E+ P N ++ + + Y+++GR
Sbjct: 177 MLVK-DVNVWNALLAGYGKVGEMDEAR----SLLEMMPCWVRNEVSWTCVISGYAKSGRA 231
Query: 394 DEADRVREQM 403
EA V ++M
Sbjct: 232 SEAIEVFQRM 241
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+++R++V+W ++IAG + G E A+F M+ + V RP+ VT +++L AC +
Sbjct: 311 VNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGV-RPNDVTFIAILSACSHVGWVDL 369
Query: 61 GMEVHNFVIES---HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS-YSAIIS 116
G + N + H ++ + C +I + + G L A ++ M K + + ++++
Sbjct: 370 GKRLFNSMRSKYGIHPNIEHYGC--MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLA 427
Query: 117 GYMVHGFVE 125
VH +E
Sbjct: 428 ASNVHHDLE 436
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/455 (34%), Positives = 261/455 (57%), Gaps = 6/455 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD+VSWN +I+ Y G +E+ +F+ M L+ D T+VS L AC ++
Sbjct: 107 MPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEI 166
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++ FV+ + +M + I NAL+ M+ KCG LD ARA+ D M DK+ +++++ GY+
Sbjct: 167 GERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVS 225
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G +++A LF+ + W A+++G VQ NR + L+L R MQ +G+RP+ + S+
Sbjct: 226 TGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSL 285
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + L+ GK IHGY +NR + V TA++D YAK G + A VF K R
Sbjct: 286 LTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDT 345
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
WT++I A +G + +A+ L+ EM N G++ D +TF AVL+AC H G V + IF++
Sbjct: 346 ASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHS 405
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPS---AKVWGALLYGASISG 357
M+ ++ +QP EH +C++ +L RA + EA E + KM + V+ +LL A G
Sbjct: 406 MTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYG 465
Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
+V++ + V + L ++E ++ + ++A++Y+ A RW++ VR +MK+ G+ K PG S I
Sbjct: 466 NVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525
Query: 418 ECSGGLQSFVAKDT--SGDKSEQIYLILERLLGLM 450
E G F+ D S K ++I +L + LM
Sbjct: 526 EIDGVGHEFIVGDDLLSHPKMDEINSMLHQTTNLM 560
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/384 (23%), Positives = 173/384 (45%), Gaps = 67/384 (17%)
Query: 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
++ +N M+ + G + + ALF E L L PD T+ VL++ G+ ++ G +VH
Sbjct: 11 LLMYNKMLKSLADGKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVH 69
Query: 66 NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
+ +++ ++ D ++ N+L+GMYA G ++ + DEM +D VS
Sbjct: 70 GYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVS--------------- 114
Query: 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPNAVTISSIFSLF 184
WN +IS V N R E + + + M Q S ++ + TI S S
Sbjct: 115 ----------------WNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSAC 158
Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS----- 239
S NL+ G+ I+ + V ++ ++ + A++D + K G L A+ VFD + ++
Sbjct: 159 SALKNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWT 217
Query: 240 --------------------------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
+++WTA+++ Y +A+ LF M GI+P
Sbjct: 218 SMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRP 277
Query: 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333
D ++L+ CA +G +++ I ++ V A +V + ++ I A E
Sbjct: 278 DNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTA-LVDMYAKCGCIETALEV 336
Query: 334 VSKMPVKPSAKVWGALLYGASISG 357
++ + +A W +L+YG +++G
Sbjct: 337 FYEIKERDTAS-WTSLIYGLAMNG 359
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 131/282 (46%), Gaps = 17/282 (6%)
Query: 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192
+++ P L +N ++ L VL L E++ G+ P+ T+ + +
Sbjct: 5 LLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
G+++HGYAVK + + YV+ +++ YA G + +VFD R ++ W +IS+Y
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 253 HGDASKAVSLFNEM-LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
+G A+ +F M + ++ D T + LSAC+ ++ I+ + ++ + +
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRI 184
Query: 312 EH----YACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367
+ C G L +AR + ++ + K W ++++G +G ++ +
Sbjct: 185 GNALVDMFCKCGCLDKARAVFDSMR-------DKNVKCWTSMVFGYVSTGRIDEARV--- 234
Query: 368 HLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
LFE P ++ + M N Y Q R+DEA + M+ +G+
Sbjct: 235 -LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGI 275
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 245/453 (54%), Gaps = 32/453 (7%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
++D VSW +MI G +Q G +E FREM L+ D SVL ACG I G
Sbjct: 232 EKDSVSWAAMIKGLAQNGLAKEAIECFREM-KVQGLKMDQYPFGSVLPACGGLGAINEGK 290
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
++H +I ++ + +++ +ALI MY KC L YA+ + D M K+ V
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV------------- 337
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
+W A++ G Q R E + + +MQ SG+ P+ T+ S
Sbjct: 338 ------------------SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAIS 379
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
++ S+L+ G + HG A+ + + V+ +++ Y K G + + R+F+ R +
Sbjct: 380 ACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS 439
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
WTA++SAYA G A + + LF++M+ +G++PD VT T V+SAC+ +GLV+K F M+
Sbjct: 440 WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
+YGI PS+ HY+CM+ + SR+ R+ EA F++ MP P A W LL G++E+G
Sbjct: 500 SEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIG 559
Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGG 422
K+ + L E++P + Y +++++Y+ G+WD ++R M+E + K PG+SWI+ G
Sbjct: 560 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGK 619
Query: 423 LQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
L SF A D S +QIY LE L + + GY
Sbjct: 620 LHSFSADDESSPYLDQIYAKLEELNNKIIDNGY 652
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/439 (27%), Positives = 209/439 (47%), Gaps = 48/439 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ RD V+WN +I GYS G + M+ VT++++L+ + +
Sbjct: 98 LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H VI+ + L + + L+ MYA G + A+ + + D++ V Y++++ G +
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G +E A+ LF+ M++ +S W A+I GL QN + ++ REM+ G++ + S+
Sbjct: 218 CGMIEDALQLFRGMEKDSVS-WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ GK+IH ++ + +IYV +A+ID Y K LH A+ VFDR K +++
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH------------- 287
+ WTA++ Y G A +AV +F +M +GI PD T +SACA+
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396
Query: 288 ---SGL-------------------VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
SGL +D + +FN M+ + + + MV ++
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS-----WTAMVSAYAQFG 451
Query: 326 RISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPENTGN 379
R E + KM +KP ++ S +G VE G+ + + I P + G+
Sbjct: 452 RAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVP-SIGH 510
Query: 380 YIIMANLYSQAGRWDEADR 398
Y M +L+S++GR +EA R
Sbjct: 511 YSCMIDLFSRSGRLEEAMR 529
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 160/353 (45%), Gaps = 21/353 (5%)
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+H +I + + ++ N ++ YA S YAR + D + + S++ ++ Y G
Sbjct: 28 IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87
Query: 124 VEKAMDLFQVMKRPGLSTWNAVI-----SGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+ + F+ + TWN +I SGLV +A ++R+ A+ R VT+
Sbjct: 88 ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLV-GAAVKAYNTMMRDFSANLTR---VTLM 143
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
++ L S ++ GK+IHG +K ++ + V + ++ YA G + A++VF R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
+ +++ +++ A G A+ LF G++ D V++ A++ A +GL +A + F
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLF-----RGMEKDSVSWAAMIKGLAQNGLAKEAIECF 258
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF---VSKMPVKPSAKVWGALLYGASI 355
M Q G++ + ++ I+E + + + + V AL+
Sbjct: 259 REMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK 317
Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
+ K V D + + +N ++ M Y Q GR +EA ++ M+ SG+
Sbjct: 318 CKCLHYAKTVFDRM---KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGI 367
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH 253
K IHG ++ ++ I+ YA A+RVFDR +L W ++ AY+
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
G S+ S F ++ + D VT+ ++ + SGLV A +N M
Sbjct: 86 GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTM 129
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 156/521 (29%), Positives = 272/521 (52%), Gaps = 69/521 (13%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RDIVSWNSMI+GY G LF+EML +PD + +S L AC
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG-FKPDRFSTMSALGACSHVYSPKM 249
Query: 61 GMEVHNFVIESHIKM-DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSY-------- 111
G E+H + S I+ D+ + +++ MY+K G + YA + + M ++ V++
Sbjct: 250 GKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309
Query: 112 ----------------------------------SAIISGYMVHGF-------------- 123
SAI+ G +HG+
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLET 369
Query: 124 -----------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
++ A +F M + +WN++I+ VQN ++ + L+L +E+ S + P
Sbjct: 370 ALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVP 429
Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
++ TI+SI ++ +L G+EIH Y VK+RY N + +++ YA G L A++ F
Sbjct: 430 DSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCF 489
Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292
+ + ++ W +II AYA HG +V LF+EM+ + + P+ TF ++L+AC+ SG+VD
Sbjct: 490 NHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVD 549
Query: 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
+ W+ F +M +YGI P +EHY CM+ ++ R S A F+ +MP P+A++WG+LL
Sbjct: 550 EGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNA 609
Query: 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIP 412
+ D+ + +F + +F++E +NTG Y+++ N+Y++AGRW++ +R++ M+ G+++
Sbjct: 610 SRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTS 669
Query: 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
RS +E G F D S + +IY +L+ + ++ EE
Sbjct: 670 SRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEE 710
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 34/288 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M+K D WN MI G++ G Y E + M+ + V + D T V+++ S +
Sbjct: 90 MNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGV-KADTFTYPFVIKSVAGISSLEE 148
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H VI+ D+++CN+LI +Y K G A + +EM ++D VS++++ISGY+
Sbjct: 149 GKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G G S+ L L +EM G +P+ + S
Sbjct: 209 LG--------------DGFSS-----------------LMLFKEMLKCGFKPDRFSTMSA 237
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
SH + K GKEIH +AV++R + ++ V T+I+D Y+K G + A+R+F+ R+
Sbjct: 238 LGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRN 297
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACA 286
++ W +I YA +G + A F +M NG+QPD +T +L A A
Sbjct: 298 IVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA 345
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 60/340 (17%)
Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
+ G+ +E A+ LF M + WN +I G + + M +GV+ +
Sbjct: 71 LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130
Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
T + + S+L+ GK+IH +K + ++YV ++I Y K G A++VF+
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190
Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS------ 288
R ++ W ++IS Y A GD ++ LF EML G +PD + + L AC+H
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMG 250
Query: 289 ------------------------------GLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318
G V A IFN M IQ ++ + M+
Sbjct: 251 KEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-----IQRNIVAWNVMI 305
Query: 319 GVLSRARRISEATEFVSKMP----VKPSAKV------WGALLYGASISGDVELGKFVCDH 368
G +R R+++A KM ++P A+L G +I G F+
Sbjct: 306 GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHM 365
Query: 369 LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
+ E + ++Y + G+ A+ + ++M E +
Sbjct: 366 VLETA---------LIDMYGECGQLKSAEVIFDRMAEKNV 396
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
T + +A + + A ++FD +W +I + + G +AV ++ M+ G++
Sbjct: 68 TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127
Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC--MVGVLSRARRISEA 330
D T+ V+ + A +++ I +AM + G V Y C ++ + + +A
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKI-HAMVIKLGFVSDV--YVCNSLISLYMKLGCAWDA 184
Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGD 358
+ +MP + W +++ G GD
Sbjct: 185 EKVFEEMPERDIVS-WNSMISGYLALGD 211
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 269/471 (57%), Gaps = 10/471 (2%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
++ +N +I +S G + + +ML S + PD +T +++A + ++ G +
Sbjct: 81 NLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIW-PDNITFPFLIKASSEMECVLVGEQT 139
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H+ ++ + D+++ N+L+ MYA CG + A + +M +D VS++++++GY G V
Sbjct: 140 HSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMV 199
Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
E A ++F M L TW+ +I+G +NN E +DL M+ GV N + S+ S
Sbjct: 200 ENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSC 259
Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
+H L+ G+ + Y VK+ N+ + TA++D + + G + A VF+ + W+
Sbjct: 260 AHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWS 319
Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
+II A HG A KA+ F++M++ G P VTFTAVLSAC+H GLV+K +I+ M
Sbjct: 320 SIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKD 379
Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
+GI+P +EHY C+V +L RA +++EA F+ KM VKP+A + GALL I + E+ +
Sbjct: 380 HGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAER 439
Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
V + L +++PE++G Y++++N+Y+ AG+WD+ + +R+ MKE + K PG S IE G +
Sbjct: 440 VGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKIN 499
Query: 425 SF-VAKDTSGDKSEQIYLILERLLGLMREEGY--------VLLDEVEEESA 466
F + D + +I E +LG +R GY +DE E+ES+
Sbjct: 500 KFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESS 550
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 41/313 (13%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV----------------------- 37
M RD+VSW SM+AGY + G E + +F EM + +
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 38 --LRPDGV-----TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90
++ +GV +VSV+ +C + FG + +V++SH+ ++L + AL+ M+ +C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 91 GSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL----STWNAVI 146
G ++ A + + + + D +S+S+II G VHG KAM F M G T+ AV+
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 147 SGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205
S E L++ M+ G+ P I + L E + +K
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKL---AEAENFILKMHV 414
Query: 206 DRNIYVATAII---DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL 262
N + A++ Y T + + K + + + YA G K SL
Sbjct: 415 KPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESL 474
Query: 263 FNEMLNNGIQPDP 275
+ M ++ P
Sbjct: 475 RDMMKEKLVKKPP 487
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 144/337 (42%), Gaps = 45/337 (13%)
Query: 46 VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
+++LQ+C SD+ +H F++ +H+ D+++ + L+ + + + LL
Sbjct: 16 LALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLL----- 67
Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
GY A +F ++ P L +N +I +M
Sbjct: 68 -----------GY--------AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQM 108
Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
S + P+ +T + S + G++ H V+ + ++YV +++ YA GF+
Sbjct: 109 LKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFI 168
Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
A R+F + R ++ WT++++ Y G A +F+EM + + T++ +++
Sbjct: 169 AAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNL----FTWSIMINGY 224
Query: 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI------SEATEFVSKMPV 339
A + +KA D+F M + G+ V + MV V+S + A E+V K +
Sbjct: 225 AKNNCFEKAIDLFEFMKRE-GV---VANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376
+ + AL+ GD+E H+FE PE
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAI----HVFEGLPET 313
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 253/458 (55%), Gaps = 37/458 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKAL--FREMLNSPVLRPDGVTVVSVLQACGQSSDI 58
M +RD V+W ++I+GYSQ C AL F +ML P+ T+ SV++A
Sbjct: 121 MPQRDFVTWTTLISGYSQHD--RPCDALLFFNQMLRFGY-SPNEFTLSSVIKAAAAERRG 177
Query: 59 VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118
G ++H F ++ ++ + +AL+ +Y + G +D A+ + D + +++V
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV--------- 228
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+WNA+I+G + + E L+L + M G RP+ + +
Sbjct: 229 ----------------------SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
S+F S L+ GK +H Y +K+ + ++D YAK+G +H A+++FDR R
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326
Query: 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298
++ W ++++AYA HG +AV F EM GI+P+ ++F +VL+AC+HSGL+D+ W +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYY 386
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
M GI P HY +V +L RA ++ A F+ +MP++P+A +W ALL + +
Sbjct: 387 ELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKN 445
Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
ELG + +H+FE++P++ G ++I+ N+Y+ GRW++A RVR++MKESG+ K P SW+E
Sbjct: 446 TELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVE 505
Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV 456
+ FVA D + E+I E +L ++E GYV
Sbjct: 506 IENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 543
Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
++L+ C ++ G VH +++S + D+ + N L+ MYAKCGSL+ AR + ++M +
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
D V+++ +ISGY H A+ F M R G S
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS-------------------------- 158
Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
PN T+SS+ + G ++HG+ VK +D N++V +A++D Y + G +
Sbjct: 159 -----PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213
Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
AQ VFD + R+ + W A+I+ +A KA+ LF ML +G +P ++ ++ AC+
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273
Query: 287 HSGLVDK 293
+G +++
Sbjct: 274 STGFLEQ 280
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 155/490 (31%), Positives = 276/490 (56%), Gaps = 45/490 (9%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFR-EMLNSPVLRPDGVTVVSVLQACGQSSDIV 59
M ++D+V+WN +I+GY Q G E+ A++ +++ L+ D VT+ +++ A ++ ++
Sbjct: 335 MFEKDVVTWNLIISGYVQQGLVED--AIYMCQLMRLEKLKYDCVTLATLMSAAARTENLK 392
Query: 60 FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY- 118
G EV + I + D+ + + ++ MYAKCGS+ A+ + D +KD + ++ +++ Y
Sbjct: 393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452
Query: 119 ----------------------------------MVHGFVEKAMDLFQVMKR----PGLS 140
+ +G V++A D+F M+ P L
Sbjct: 453 ESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLI 512
Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200
+W +++G+VQN E + +R+MQ SG+RPNA +I+ S +H ++L G+ IHGY
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYI 572
Query: 201 VKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
++N ++ + + T+++D YAK G ++ A++VF L + A+ISAYA +G+ +A
Sbjct: 573 IRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEA 632
Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319
++L+ + G++PD +T T VLSAC H+G +++A +IF + + ++P +EHY MV
Sbjct: 633 IALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVD 692
Query: 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379
+L+ A +A + +MP KP A++ +L+ + EL ++ L E EPEN+GN
Sbjct: 693 LLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGN 752
Query: 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG--GLQSFVAKDTSGDKSE 437
Y+ ++N Y+ G WDE ++RE MK GL K PG SWI+ +G G+ FVA D + +
Sbjct: 753 YVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRIN 812
Query: 438 QIYLILERLL 447
+I ++L LL
Sbjct: 813 EIQMMLALLL 822
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 198/403 (49%), Gaps = 42/403 (10%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
R+ V+WN+++ GY Q G EE LF +M V P VTV + L A + G +
Sbjct: 237 RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGV-EPTRVTVSTCLSASANMGGVEEGKQ 295
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
H I + +++D + +L+ Y K G ++YA + D M +KD V
Sbjct: 296 SHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVV-------------- 341
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
TWN +ISG VQ E + + + M+ ++ + VT++++ S
Sbjct: 342 -----------------TWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSA 384
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
+ NLK GKE+ Y +++ ++ +I +A+ ++D YAK G + A++VFD + LI+W
Sbjct: 385 AARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILW 444
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
+++AYA G + +A+ LF M G+ P+ +T+ ++ + +G VD+A D+F M
Sbjct: 445 NTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQS 504
Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPSAKVWGALLYGASISGDVE 360
GI P++ + M+ + + EA F+ KM ++P+A L + +
Sbjct: 505 S-GIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLH 563
Query: 361 LGKFVCDHLFEIEPENTGNYI----IMANLYSQAGRWDEADRV 399
+G+ + H + I + + + ++Y++ G ++A++V
Sbjct: 564 IGRTI--HGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKV 604
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 197/429 (45%), Gaps = 52/429 (12%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
R++ SW ++I + G E F EML + + PD V +V +ACG FG
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIF-PDNFVVPNVCKACGALKWSRFGRG 194
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
VH +V++S ++ +++ ++L MY KCG LD A + DE+ D++ V+
Sbjct: 195 VHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA------------- 241
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
WNA++ G VQN ++E + L +M+ GV P VT+S+ S
Sbjct: 242 ------------------WNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSA 283
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
++ ++ GK+ H A+ N + + + T++++ Y K G + A+ VFDR + ++ W
Sbjct: 284 SANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTW 343
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIF 298
IIS Y G A+ + M ++ D VT ++SA A + G + + I
Sbjct: 344 NLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIR 403
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG- 357
++ + +V G + A+++ ++T V+ +W LL + SG
Sbjct: 404 HSFESDIVLASTVMDMYAKCGSIVDAKKVFDST-------VEKDLILWNTLLAAYAESGL 456
Query: 358 DVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGR- 414
E + E P N T N II++ L + G+ DEA + QM+ SG+ IP
Sbjct: 457 SGEALRLFYGMQLEGVPPNVITWNLIILSLL--RNGQVDEAKDMFLQMQSSGI--IPNLI 512
Query: 415 SWIECSGGL 423
SW G+
Sbjct: 513 SWTTMMNGM 521
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 47/352 (13%)
Query: 48 VLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSLDYARALLDEMSD 105
+LQ C D+ G ++H ++++ + +I L+ YAKC +L+ A L ++
Sbjct: 76 ILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRV 135
Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165
++ S++AII G E A+ G V EM
Sbjct: 136 RNVFSWAAIIGVKCRIGLCEGAL------------------MGFV-------------EM 164
Query: 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225
+ + P+ + ++ + G+ +HGY VK+ + ++VA+++ D Y K G L
Sbjct: 165 LENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVL 224
Query: 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
A +VFD R+ + W A++ Y +G +A+ LF++M G++P VT + LSA
Sbjct: 225 DDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSAS 284
Query: 286 AHSGLVDK-----AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
A+ G V++ A I N M + S+ ++ C VG++ E E V +
Sbjct: 285 ANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLI-------EYAEMVFDRMFE 337
Query: 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392
W ++ G G VE ++C L +E + + +A L S A R
Sbjct: 338 KDVVTWNLIISGYVQQGLVEDAIYMC-QLMRLEKLKY-DCVTLATLMSAAAR 387
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 12/230 (5%)
Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196
P +++ +S L +N + L LV EM +R I + +L GK+I
Sbjct: 33 PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQI 92
Query: 197 HGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
H +KN Y RN Y+ T ++ YAK L A+ +F + + R++ W AII G
Sbjct: 93 HARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIG 152
Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314
A+ F EML N I PD V AC W F Y ++ +E
Sbjct: 153 LCEGALMGFVEMLENEIFPDNFVVPNVCKACGA-----LKWSRFGRGVHGYVVKSGLEDC 207
Query: 315 ACMVGVLS----RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+ L+ + + +A++ ++P + +A W AL+ G +G E
Sbjct: 208 VFVASSLADMYGKCGVLDDASKVFDEIPDR-NAVAWNALMVGYVQNGKNE 256
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 248/465 (53%), Gaps = 37/465 (7%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
D+V+WN+M+AGY+Q + LF +++ R D T+ +V + CG I G +V
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H + I+S +DLW+ + ++ MY KCG + A+ D + D+V+
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA-------------- 585
Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
W +ISG ++N E + +M+ GV P+ TI+++
Sbjct: 586 -----------------WTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628
Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
S + L+ G++IH A+K + +V T+++D YAK G + A +F R + ++ W
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688
Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
A++ A HG+ + + LF +M + GI+PD VTF VLSAC+HSGLV +A+ +M G
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
YGI+P +EHY+C+ L RA + +A + M ++ SA ++ LL + GD E GK
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
V L E+EP ++ Y++++N+Y+ A +WDE R MK + K PG SWIE +
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Query: 425 SFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
FV D S ++E IY ++ ++ +++EGYV L +VEEE
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEE 913
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 38/360 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IV 59
MS+RD++SWNS+IAG +Q G E LF ++L L+PD T+ SVL+A + +
Sbjct: 376 MSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG-LKPDQYTMTSVLKAASSLPEGLS 434
Query: 60 FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
+VH I+ + D ++ ALI Y++ + A L +
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER----------------- 477
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
H F L WNA+++G Q++ L L M G R + T+++
Sbjct: 478 -HNF--------------DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
+F + GK++H YA+K+ YD +++V++ I+D Y K G + AQ FD
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF- 298
+ WT +IS +G+ +A +F++M G+ PD T + A + +++ I
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 642
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
NA+ P V +V + ++ I +A ++ + + W A+L G + G+
Sbjct: 643 NALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGE 699
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 147/330 (44%), Gaps = 50/330 (15%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKA--------LFREMLNSPVLRPDGVTVVSVLQAC 52
M RD+VSWNS++A Y+Q EC LFR +L V+ +T+ +L+ C
Sbjct: 100 MPDRDLVSWNSILAAYAQSS---ECVVENIQQAFLLFR-ILRQDVVYTSRMTLSPMLKLC 155
Query: 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYS 112
S + H + + + D ++ AL+ +Y K G + + L +EM +D V ++
Sbjct: 156 LHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWN 215
Query: 113 AIISGYMVHGFVEKAMDLFQVMKRPGLST------------------------------- 141
++ Y+ GF E+A+DL GL+
Sbjct: 216 LMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDAS 275
Query: 142 -------WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGK 194
N +S + + ++ A+L +M S V + VT + + +L G+
Sbjct: 276 SVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQ 335
Query: 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254
++H A+K D + V+ ++I+ Y K A+ VFD R LI W ++I+ A +G
Sbjct: 336 QVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNG 395
Query: 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
+AV LF ++L G++PD T T+VL A
Sbjct: 396 LEVEAVCLFMQLLRCGLKPDQYTMTSVLKA 425
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 34/285 (11%)
Query: 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFG 61
S +I+ N ++ Y G Y F +M+ S V D VT + +L + + G
Sbjct: 276 SVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDV-ECDQVTFILMLATAVKVDSLALG 334
Query: 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121
+VH ++ + + L + N+LI MY K +AR + D MS++D +S++++I+G +
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394
Query: 122 GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
G +A+ LF + R GL +P+ T++S+
Sbjct: 395 GLEVEAVCLFMQLLRCGL-------------------------------KPDQYTMTSVL 423
Query: 182 SLFSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S L K++H +A+K + +V+TA+ID Y++ + A+ +F+R L
Sbjct: 424 KAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDL 482
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
+ W A+++ Y D K + LF M G + D T V C
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC 527
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 26/224 (11%)
Query: 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114
SSD++ G H ++ + ++ N LI MY+KCGSL YAR + D+M D+D VS+++I
Sbjct: 52 SSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111
Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
++ Y A S V N +A L L R ++ V +
Sbjct: 112 LAAY-------------------------AQSSECVVENIQQAFL-LFRILRQDVVYTSR 145
Query: 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234
+T+S + L H + + HGYA K D + +VA A+++ Y K G + + +F+
Sbjct: 146 MTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEE 205
Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278
R +++W ++ AY G +A+ L + ++G+ P+ +T
Sbjct: 206 MPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/473 (30%), Positives = 258/473 (54%), Gaps = 40/473 (8%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
++ WN++I GY++ G +L+REM S ++ PD T +++A +D+ G +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H+ VI S +++ N+L+ +YA CG + A + D+M +KD
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----------------- 186
Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184
L WN+VI+G +N + E L L EM + G++P+ TI S+ S
Sbjct: 187 --------------LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Query: 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
+ L GK +H Y +K RN++ + ++D YA+ G + A+ +FD ++ + WT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292
Query: 245 AIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
++I A +G +A+ LF M + G+ P +TF +L AC+H G+V + ++ F M
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352
Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
+Y I+P +EH+ CMV +L+RA ++ +A E++ MP++P+ +W LL ++ GD +L +
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412
Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
F + ++EP ++G+Y++++N+Y+ RW + ++R+QM G+ K+PG S +E +
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472
Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVL--------LDEVEEESAYV 468
F+ D S +S+ IY L+ + G +R EGYV ++E E+E+A V
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVV 525
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 41/265 (15%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++D+V+WNS+I G+++ G EE AL+ EM NS ++PDG T+VS+L AC + +
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G VH ++I+ + +L N L+ +YA+CG ++ A+ L DEM DK+ VS++++I G V
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+GF ++A++LF+ M+ G+ P +T I
Sbjct: 301 NGFGKEAIELFKYME------------------------------STEGLLPCEITFVGI 330
Query: 181 FSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
SH +K G E Y ++ R + ++D A+ G + A
Sbjct: 331 LYACSHCGMVKEGFEYFRRMREEYKIEPRIEH----FGCMVDLLARAGQVKKAYEYIKSM 386
Query: 236 KGR-SLIIWTAIISAYAAHGDASKA 259
+ +++IW ++ A HGD+ A
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLA 411
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 228/393 (58%), Gaps = 3/393 (0%)
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+H+ S + D + C LI YAK G+L AR + DEMS +D ++A+I+GY G
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA-SGVRPNAVTISSIFS 182
++ AM+LF M R +++W VISG QN + L + M+ V+PN +T+ S+
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF-KGRSLI 241
++ L+ G+ + GYA +N + NIYV A I+ Y+K G + A+R+F+ R+L
Sbjct: 224 ACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLC 283
Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAM 301
W ++I + A HG +A++LF +ML G +PD VTF +L AC H G+V K ++F +M
Sbjct: 284 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 343
Query: 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVEL 361
+ I P +EHY CM+ +L R ++ EA + + MP+KP A VWG LL S G+VE+
Sbjct: 344 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEI 403
Query: 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW-IECS 420
+ + LF++EP N GN +IM+N+Y+ +WD R+R+ MK+ + K G S+ +E
Sbjct: 404 AEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVG 463
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
+ F +D S +S +IY +LE + M+ E
Sbjct: 464 VDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKLE 496
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 121/265 (45%), Gaps = 40/265 (15%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++++ SW ++I+G+SQ G Y E +F M ++P+ +TVVSVL AC ++
Sbjct: 174 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 233
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYM 119
G + + E+ ++++CNA I MY+KCG +D A+ L +E+ + ++ S++++I
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
HG +H+ L L +M G +P+AVT
Sbjct: 294 THG-------------------------------KHDEALTLFAQMLREGEKPDAVTFVG 322
Query: 180 IFSLFSHFSNLKGGKEIHGYAVK-NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238
+ H + G+E+ + ++ + +ID + G L Q +D K
Sbjct: 323 LLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKL---QEAYDLIKTM 379
Query: 239 SL----IIWTAIISAYAAHGDASKA 259
+ ++W ++ A + HG+ A
Sbjct: 380 PMKPDAVVWGTLLGACSFHGNVEIA 404
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 92 SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQ 151
+L YAR L D + Y+ +I Y VH
Sbjct: 31 NLVYARKLFDHHQNSCTFLYNKLIQAYYVH------------------------------ 60
Query: 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211
+ HE+++ L + G+RP+ T + IF+ + FS+ + + +H ++ ++ + +
Sbjct: 61 HQPHESIV-LYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119
Query: 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
T +I YAK G L A+RVFD R + +W A+I+ Y GD A+ LF+ M +
Sbjct: 120 CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNV 179
Query: 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS 310
++T V+S + +G +A +F M ++P+
Sbjct: 180 ----TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 33/219 (15%)
Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
+ G K++H + ++ D ++ L A+++FD + ++ +I A
Sbjct: 1 MNGIKQLHAHCLRTGVDE----TKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQA 56
Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HSGLVDKAWDIF 298
Y H +++ L+N + +G++P TF + +A A HS ++
Sbjct: 57 YYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE-- 114
Query: 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
S + + YA +G L ARR+ + K VW A++ G GD
Sbjct: 115 ---SDSFCCTTLITAYA-KLGALCCARRVFDEMS-------KRDVPVWNAMITGYQRRGD 163
Query: 359 VELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEA 396
++ LF+ P +N ++ + + +SQ G + EA
Sbjct: 164 MKAAM----ELFDSMPRKNVTSWTTVISGFSQNGNYSEA 198
>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510
OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1
Length = 429
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/414 (35%), Positives = 240/414 (57%), Gaps = 4/414 (0%)
Query: 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVH 65
++S ++ Y+ G +E+ LF +M +S L D L++C + V G VH
Sbjct: 12 LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71
Query: 66 NFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125
++S+ + ++ AL+ MY KC S+ +AR L DE+ ++ V ++A+IS Y G V+
Sbjct: 72 AHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVK 131
Query: 126 KAMDLFQVMK-RPGLSTWNAVISGLV--QNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
+A++L++ M P S++NA+I GLV ++ + A+ + R+M +PN +T+ ++ S
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAI-EFYRKMIEFRFKPNLITLLALVS 190
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
S + KEIH YA +N + + + + +++ Y + G + Q VFD + R ++
Sbjct: 191 ACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVA 250
Query: 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
W+++ISAYA HGDA A+ F EM + PD + F VL AC+H+GL D+A F M
Sbjct: 251 WSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQ 310
Query: 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELG 362
G YG++ S +HY+C+V VLSR R EA + + MP KP+AK WGALL G++EL
Sbjct: 311 GDYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELA 370
Query: 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
+ L +EPEN NY+++ +Y GR +EA+R+R +MKESG+ PG SW
Sbjct: 371 EIAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSSW 424
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 32/192 (16%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP------------------------ 36
+ +R+ V WN+MI+ Y+ G +E L+ M P
Sbjct: 109 IPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIE 168
Query: 37 --------VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88
+P+ +T+++++ AC E+H++ + I+ + + L+ Y
Sbjct: 169 FYRKMIEFRFKPNLITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYG 228
Query: 89 KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISG 148
+CGS+ Y + + D M D+D V++S++IS Y +HG E A+ FQ M+ ++ +
Sbjct: 229 RCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLN 288
Query: 149 LVQNNRHEAVLD 160
+++ H + D
Sbjct: 289 VLKACSHAGLAD 300
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 32/147 (21%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M RD+V+W+S+I+ Y+ G E F+EM + V PD + ++VL+AC +
Sbjct: 243 MEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKV-TPDDIAFLNVLKACSHA----- 296
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+ V ++ D Y S D+ L+D +S
Sbjct: 297 GLADEALVYFKRMQGD----------YGLRASKDHYSCLVDVLSRV-------------- 332
Query: 121 HGFVEKAMDLFQVM-KRPGLSTWNAVI 146
G E+A + Q M ++P TW A++
Sbjct: 333 -GRFEEAYKVIQAMPEKPTAKTWGALL 358
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 249/454 (54%), Gaps = 32/454 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP-VLRPDGVTVVSVLQACGQSSDIV 59
M ++D+V+W S+I+G + G ++E +F +M + L+PD + SV AC +
Sbjct: 434 MEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALR 493
Query: 60 FGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
FG++VH +I++ + +++++ ++LI +Y+KCG L EM
Sbjct: 494 FGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCG--------LPEM---------------- 529
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
A+ +F M + WN++IS +NN E +DL M + G+ P++V+I+S
Sbjct: 530 -------ALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITS 582
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
+ S ++L GK +HGY ++ + ++ A+ID Y K GF A+ +F + + +S
Sbjct: 583 VLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKS 642
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
LI W +I Y +HGD A+SLF+EM G PD VTF +++SAC HSG V++ +IF
Sbjct: 643 LITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFE 702
Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
M YGI+P++EHYA MV +L RA + EA F+ MP++ + +W LL + +V
Sbjct: 703 FMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNV 762
Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
ELG + L +EPE Y+ + NLY +AG +EA ++ MKE GL K PG SWIE
Sbjct: 763 ELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEV 822
Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453
S F + +S +I+ +L RL M +E
Sbjct: 823 SDRTNVFFSGGSSSPMKAEIFNVLNRLKSNMVDE 856
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 27/284 (9%)
Query: 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNF 67
S NS I Q G Y + L+ + S T S+L+AC +++ +G +H
Sbjct: 26 SINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85
Query: 68 VIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127
V+ + D +I +L+ MY KCG LDYA + D S S S + A
Sbjct: 86 VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQ----SQSGV-----------SA 130
Query: 128 MDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187
D ++ WN++I G + R + + R M GVRP+A ++S + S+
Sbjct: 131 RD---------VTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKE 181
Query: 188 SNLK--GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-LIIWT 244
N + GK+IHG+ ++N D + ++ TA+ID Y K G A RVF + +S +++W
Sbjct: 182 GNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWN 241
Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
+I + G ++ L+ NN ++ +FT L AC+ S
Sbjct: 242 VMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQS 285
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 160/367 (43%), Gaps = 42/367 (11%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+S RD+ WNSMI GY + ++E FR ML V RPD ++ V+ + +
Sbjct: 128 VSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGV-RPDAFSLSIVVSVMCKEGNFRR 186
Query: 61 --GMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLDYARALLDEMSDKDEVSYSAIISG 117
G ++H F++ + + D ++ ALI MY K G S+D R + E+ DK V
Sbjct: 187 EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFV-EIEDKSNVVL------ 239
Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
WN +I G + E+ LDL + + V+ + +
Sbjct: 240 ------------------------WNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSF 275
Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
+ S N G++IH VK + YV T+++ Y+K G + A+ VF
Sbjct: 276 TGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVD 335
Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
+ L IW A+++AYA + A+ LF M + PD T + V+S C+ GL + +
Sbjct: 336 KRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSV 395
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
+A + IQ + + ++ + S+ +A M K WG+L ISG
Sbjct: 396 -HAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMV-AWGSL-----ISG 448
Query: 358 DVELGKF 364
+ GKF
Sbjct: 449 LCKNGKF 455
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 34/286 (11%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
K ++V WN MI G+ G E L+ N+ V + + L AC QS + FG
Sbjct: 234 KSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSV-KLVSTSFTGALGACSQSENSGFGR 292
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG 122
++H V++ + D ++C +L+ MY+KCG + A + + DK ++A+++ Y +
Sbjct: 293 QIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEND 352
Query: 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
+ A+DLF M R ++VL P++ T+S++ S
Sbjct: 353 YGYSALDLFGFM-------------------RQKSVL------------PDSFTLSNVIS 381
Query: 183 LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLII 242
S GK +H K + +A++ Y+K G A VF + + ++
Sbjct: 382 CCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVA 441
Query: 243 WTAIISAYAAHGDASKAVSLFNEML--NNGIQPDPVTFTAVLSACA 286
W ++IS +G +A+ +F +M ++ ++PD T+V +ACA
Sbjct: 442 WGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACA 487
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 167/502 (33%), Positives = 271/502 (53%), Gaps = 47/502 (9%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +++ VSW M+ G+ Q G ++ L+ EM+ D + S++ + +
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK----DNIARTSMIHGLCKEGRVDE 190
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
E+ + + E + W ++ Y + +D AR + D M +K EVS+++++ GY+
Sbjct: 191 AREIFDEMSERSVIT--W--TTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQ 246
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQN--------------NRHEA--------- 157
+G +E A +LF+VM + NA+ISGL Q R++A
Sbjct: 247 NGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIH 306
Query: 158 --------VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209
LDL MQ GVRP T+ SI S+ + ++L GK++H V+ ++D ++
Sbjct: 307 ERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDV 366
Query: 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM-LN 268
YVA+ ++ Y K G L ++ +FDRF + +I+W +IIS YA+HG +A+ +F EM L+
Sbjct: 367 YVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLS 426
Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328
+P+ VTF A LSAC+++G+V++ I+ +M +G++P HYACMV +L RA R +
Sbjct: 427 GSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFN 486
Query: 329 EATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388
EA E + M V+P A VWG+LL +++ +F L EIEPEN+G YI+++N+Y+
Sbjct: 487 EAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYA 546
Query: 389 QAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKD-TSGDKSEQIYLILERLL 447
GRW + +R+ MK + K PG SW E + +F S + E I IL+ L
Sbjct: 547 SQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELD 606
Query: 448 GLMREEGY-----VLLDEVEEE 464
GL+RE GY L +V+EE
Sbjct: 607 GLLREAGYNPDCSYALHDVDEE 628
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 185/440 (42%), Gaps = 69/440 (15%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M R+I+SWN +++GY + G +E + +F M V+ + V ++ +F
Sbjct: 74 MPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLF 133
Query: 61 -GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
M N V W LIG + + G +D A L + + DKD ++ +++I G
Sbjct: 134 WKMPEKNKVS--------WTV-MLIG-FLQDGRIDDACKLYEMIPDKDNIARTSMIHGLC 183
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179
G V++A ++F M + TW +++G QNNR +D R++ V P +S
Sbjct: 184 KEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNR----VDDARKI--FDVMPEKTEVSW 237
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
L + N G E + + + A+I + G + A+RVFD K R+
Sbjct: 238 TSMLMGYVQN--GRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERN 295
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA-----------HS 288
W +I + +G +A+ LF M G++P T ++LS CA H+
Sbjct: 296 DASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHA 355
Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI--------------------- 327
LV +D+ + + G L +++ I
Sbjct: 356 QLVRCQFDV------DVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYAS 409
Query: 328 ----SEATEFVSKMPV----KPSAKVWGALLYGASISGDVELGKFVCDHL---FEIEPEN 376
EA + +MP+ KP+ + A L S +G VE G + + + F ++P
Sbjct: 410 HGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKP-I 468
Query: 377 TGNYIIMANLYSQAGRWDEA 396
T +Y M ++ +AGR++EA
Sbjct: 469 TAHYACMVDMLGRAGRFNEA 488
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 15/199 (7%)
Query: 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270
A I ++ G +H A+++FD +S+ W ++++ Y A+ A LF+EM +
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78
Query: 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330
I +++ ++S +G +D+A +F+ M + +V + +V ++ A
Sbjct: 79 I----ISWNGLVSGYMKNGEIDEARKVFDLMP-----ERNVVSWTALVKGYVHNGKVDVA 129
Query: 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYSQ 389
KMP K W +L G G ++ C L+E+ P+ M + +
Sbjct: 130 ESLFWKMPEKNKVS-WTVMLIGFLQDGRIDDA---C-KLYEMIPDKDNIARTSMIHGLCK 184
Query: 390 AGRWDEADRVREQMKESGL 408
GR DEA + ++M E +
Sbjct: 185 EGRVDEAREIFDEMSERSV 203
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 256/471 (54%), Gaps = 39/471 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++++VSW +MI+ YSQ G E +F EM+ S +P+ T +VL +C ++S +
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG-KPNEFTFATVLTSCIRASGLGL 171
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H +++ + +++ ++L+ MYAK G + AR
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAR----------------------- 208
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
++F+ + + + A+I+G Q E L++ + + G+ PN VT +S+
Sbjct: 209 --------EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASL 260
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ S + L GK+ H + ++ + ++ID Y+K G L A+R+FD R+
Sbjct: 261 LTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTA 320
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
I W A++ Y+ HG + + LF M + ++PD VT AVLS C+H + D +IF+
Sbjct: 321 ISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFD 380
Query: 300 AM-SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358
M +G+YG +P EHY C+V +L RA RI EA EF+ +MP KP+A V G+LL +
Sbjct: 381 GMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLS 440
Query: 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE 418
V++G+ V L EIEPEN GNY+I++NLY+ AGRW + + VR M + + K PGRSWI+
Sbjct: 441 VDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQ 500
Query: 419 CSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
L F A D + + E++ ++ + M++ GYV +L +V+EE
Sbjct: 501 HEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEE 551
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 159/330 (48%), Gaps = 45/330 (13%)
Query: 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106
++L AC + G VH +I++ ++ L+ Y KC L+ AR +LDEM +K
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116
Query: 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ 166
+ VS++A+IS Y G +A+ +F EM
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFA-------------------------------EMM 145
Query: 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226
S +PN T +++ + S L GK+IHG VK YD +I+V ++++D YAK G +
Sbjct: 146 RSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIK 205
Query: 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286
A+ +F+ R ++ TAII+ YA G +A+ +F+ + + G+ P+ VT+ ++L+A +
Sbjct: 206 EAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALS 265
Query: 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----MVGVLSRARRISEATEFVSKMPVKPS 342
L+D + + ++ + YA ++ + S+ +S A MP + +
Sbjct: 266 GLALLDHG-----KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER-T 319
Query: 343 AKVWGALLYGASISGDVELGKFVCDHLFEI 372
A W A+L G S G LG+ V + LF +
Sbjct: 320 AISWNAMLVGYSKHG---LGREVLE-LFRL 345
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/455 (30%), Positives = 250/455 (54%), Gaps = 32/455 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +R +VSWN+MI Y++ E +F EM N + T+ SVL ACG + D +
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFSEFTISSVLSACGVNCDALE 180
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
++H +++ I ++L++ AL+ +YAKCG
Sbjct: 181 CKKLHCLSVKTCIDLNLYVGTALLDLYAKCG----------------------------- 211
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
++ A+ +F+ M+ TW+++++G VQN +E L L R Q + N T+SS+
Sbjct: 212 --MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSV 269
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S+ + L GK++H K+ + N++VA++ +D YAK G L + +F + ++L
Sbjct: 270 ICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 329
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+W IIS +A H + + LF +M +G+ P+ VTF+++LS C H+GLV++ F
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 389
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M YG+ P+V HY+CMV +L RA +SEA E + +P P+A +WG+LL + ++E
Sbjct: 390 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 449
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + + LFE+EPEN GN+++++N+Y+ +W+E + R+ +++ + K+ G+SWI+
Sbjct: 450 LAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIK 509
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
+ +F ++ + +I L+ L+ R+ GY
Sbjct: 510 DKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGY 544
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 118/243 (48%), Gaps = 31/243 (12%)
Query: 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104
V +LQ C ++ ++ H +I ++ D+ + N LI Y+KCG ++ AR + D M
Sbjct: 64 VHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGML 123
Query: 105 DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
++ VS++ +I Y + +A+D+F M+ G IS +
Sbjct: 124 ERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV--------------- 168
Query: 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224
+ A GV +A+ K++H +VK D N+YV TA++D YAK G
Sbjct: 169 LSACGVNCDALEC----------------KKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 212
Query: 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284
+ A +VF+ + +S + W+++++ Y + + +A+ L+ ++ + T ++V+ A
Sbjct: 213 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 272
Query: 285 CAH 287
C++
Sbjct: 273 CSN 275
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
N + I L + + K HG ++ + ++ + +I+ Y+K GF+ A++VF
Sbjct: 60 NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119
Query: 233 DRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285
D RSL+ W +I Y + S+A+ +F EM N G + T ++VLSAC
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 251/456 (55%), Gaps = 5/456 (1%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
R+ W ++I GY+ G ++E A++ M + P T ++L+ACG D+ G +
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKACGTMKDLNLGRQ 170
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
H +++ N +I MY KC S+D AR + DEM ++D +S++ +I+ Y G
Sbjct: 171 FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGN 230
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
+E A +LF+ + + W A+++G QN + + L+ M+ SG+R + VT++ S
Sbjct: 231 MECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 290
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241
+ K A K+ Y ++ + +A+ID Y+K G + A VF +++
Sbjct: 291 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVF 350
Query: 242 IWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
++++I A HG A +A+ LF+ M+ I+P+ VTF L AC+HSGLVD+ +F++
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDS 410
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +G+QP+ +HY CMV +L R R+ EA E + M V+P VWGALL I + E
Sbjct: 411 MYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW-IEC 419
+ + +HLFE+EP+ GNYI+++N+Y+ AG W RVR+ +KE GL K P SW ++
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDK 530
Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
+G + F + + S +I LE L+ + GY
Sbjct: 531 NGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGY 566
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/403 (20%), Positives = 176/403 (43%), Gaps = 63/403 (15%)
Query: 44 TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG-SLD-YARALLD 101
+++S L C + I ++H V+ + +I LI K G +D YAR +++
Sbjct: 51 SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 102 EMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL 161
+ ++ ++A+I GY + G ++A+ ++ M++ ++ + S L++ L+L
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 162 VREMQASGVRPNAVTI----SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217
R+ A R +++ ++ ++ +++ +R++ T +I
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKV----FDEMPERDVISWTELIA 223
Query: 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
YA+ G + A +F+ + ++ WTA+++ +A + +A+ F+ M +GI+ D VT
Sbjct: 224 AYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVT 283
Query: 278 FTAVLSACAH-------------------------------------SGLVDKAWDIFNA 300
+SACA G V++A ++F +
Sbjct: 284 VAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMS 343
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEF----VSKMPVKPSAKVWGALLYGASIS 356
M+ + +V Y+ M+ L+ R EA V++ +KP+ + L S S
Sbjct: 344 MNNK-----NVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHS 398
Query: 357 GDVELGKFVCDHLFE---IEPENTGNYIIMANLYSQAGRWDEA 396
G V+ G+ V D +++ ++P +Y M +L + GR EA
Sbjct: 399 GLVDQGRQVFDSMYQTFGVQPTR-DHYTCMVDLLGRTGRLQEA 440
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 9/235 (3%)
Query: 177 ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG--AQRVFDR 234
+SS+ S NL K+IHG+ ++ D++ Y+ T +I T K G A+RV +
Sbjct: 49 VSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEP 108
Query: 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294
+ R+ +WTA+I YA G +A++++ M I P TF+A+L AC ++
Sbjct: 109 VQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLG 168
Query: 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGAS 354
F+A + + V M+ + + I A + +MP + W L+ +
Sbjct: 169 RQ-FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS-WTELIAAYA 226
Query: 355 ISGDVELGKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408
G++E LFE P ++ + M ++Q + EA ++M++SG+
Sbjct: 227 RVGNMECAA----ELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 28/275 (10%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD++SW +IA Y++ G E LF + D V +++ Q++
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTK-----DMVAWTAMVTGFAQNAKPQE 264
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA-RALL----DEMSDKDEVSY-SAI 114
+E + + +S I+ D I A+ G+ YA RA+ S D V SA+
Sbjct: 265 ALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSAL 324
Query: 115 ISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM-QASGVRPN 173
I Y G VE+A+++F M + T++++I GL + R + L L M + ++PN
Sbjct: 325 IDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPN 384
Query: 174 AVTISSIFSLFSHFSNLKGGKEI-----HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228
VT SH + G+++ + V+ D T ++D +TG L
Sbjct: 385 TVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH----YTCMVDLLGRTGRL--- 437
Query: 229 QRVFDRFKGRSLI----IWTAIISAYAAHGDASKA 259
Q + K S+ +W A++ A H + A
Sbjct: 438 QEALELIKTMSVEPHGGVWGALLGACRIHNNPEIA 472
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 243/461 (52%), Gaps = 33/461 (7%)
Query: 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHN 66
V +N++I+GY+ + +FR M + V D VT++ ++ C + G +H
Sbjct: 122 VCYNALISGYTANSKVTDAAYMFRRMKETGV-SVDSVTMLGLVPLCTVPEYLWLGRSLHG 180
Query: 67 FVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126
++ + ++ + N+ I MY KCGS VE
Sbjct: 181 QCVKGGLDSEVAVLNSFITMYMKCGS-------------------------------VEA 209
Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
LF M GL TWNAVISG QN VL+L +M++SGV P+ T+ S+ S +H
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269
Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
K G E+ N + N++V+ A I YA+ G L A+ VFD +SL+ WTA+
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAM 329
Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
I Y HG + LF++M+ GI+PD F VLSAC+HSGL DK ++F AM +Y
Sbjct: 330 IGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 389
Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
++P EHY+C+V +L RA R+ EA EF+ MPV+P VWGALL I +V++ +
Sbjct: 390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAF 449
Query: 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSF 426
+ E EP N G Y++M+N+YS + + R+R M+E K PG S++E G + F
Sbjct: 450 AKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLF 509
Query: 427 VAKDTSGDKSEQIYLILERL-LGLMREEGYVLLDEVEEESA 466
+A D S +++E+++ +L+ L +M G + D EE S+
Sbjct: 510 LAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRGEEVSS 550
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68
WN + + + E +L+R ML S PD + +L++C S V G ++H V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGS-SPDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 69 IESHIKMDLWICNALIGMYAKCGSLDYARALLDE--MSDKDEVSYSAIISGYMVHGFVEK 126
+ + + ++ ALI MY KCG + AR + +E S + V Y+A+ISGY + V
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 127 AMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186
A +F+ MK G+S + + GLV T+ L
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVP----------------------LCTVPEYLWL--- 174
Query: 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI 246
G+ +HG VK D + V + I Y K G + +R+FD + LI W A+
Sbjct: 175 ------GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAV 228
Query: 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306
IS Y+ +G A + L+ +M ++G+ PDP T +VLS+CAH G ++ + G
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESN-G 287
Query: 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366
P+V + + +R +++A MPVK S W A++ + G E+G +
Sbjct: 288 FVPNVFVSNASISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLF 346
Query: 367 DHLFE--IEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404
D + + I P+ ++++ + S +G D+ + MK
Sbjct: 347 DDMIKRGIRPDG-AVFVMVLSACSHSGLTDKGLELFRAMK 385
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M + +++WN++I+GYSQ G + L+ +M +S V PD T+VSVL +C
Sbjct: 217 MPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVC-PDPFTLVSVLSSCAHLGAKKI 275
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G EV V + ++++ NA I MYA+CG+L ARA+ D M K VS++A+I Y +
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV----LDLVREMQ 166
HG E + LF M + G+ AV ++ H + L+L R M+
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 385
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,299,449
Number of Sequences: 539616
Number of extensions: 7093822
Number of successful extensions: 25665
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 17771
Number of HSP's gapped (non-prelim): 2378
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)