Query 012234
Match_columns 468
No_of_seqs 602 out of 2736
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 00:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.6E-73 3.5E-78 566.5 54.3 453 3-460 155-611 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.2E-72 2.6E-77 573.2 55.6 457 1-460 248-774 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.2E-61 6.9E-66 481.3 47.2 444 2-461 433-917 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.3E-61 2.9E-66 492.4 44.2 408 1-413 147-626 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.5E-61 3.2E-66 483.7 42.6 452 2-462 366-850 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.7E-56 1.5E-60 440.5 43.7 392 3-403 84-488 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-28 1.9E-32 249.8 45.7 395 4-408 463-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-27 2.8E-32 248.6 46.9 392 6-407 431-833 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.7E-23 3.7E-28 187.6 29.7 378 6-395 116-508 (966)
10 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-21 6E-26 190.2 41.4 390 9-406 130-571 (615)
11 PRK11447 cellulose synthase su 99.9 2E-20 4.4E-25 195.9 46.3 386 13-409 276-744 (1157)
12 PRK11788 tetratricopeptide rep 99.9 1.6E-21 3.4E-26 182.5 30.5 297 86-415 44-356 (389)
13 PRK11447 cellulose synthase su 99.9 1.7E-20 3.7E-25 196.5 41.3 389 8-407 237-701 (1157)
14 KOG4626 O-linked N-acetylgluco 99.9 6.6E-22 1.4E-26 177.6 26.0 389 10-407 52-486 (966)
15 PRK11788 tetratricopeptide rep 99.9 3.9E-21 8.4E-26 179.9 30.4 280 51-337 44-344 (389)
16 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.7E-24 177.0 38.8 373 16-407 15-404 (656)
17 PRK10049 pgaA outer membrane p 99.9 1.2E-18 2.6E-23 174.7 42.0 391 10-407 19-457 (765)
18 PRK15174 Vi polysaccharide exp 99.9 6.2E-19 1.3E-23 173.1 38.4 319 10-337 46-378 (656)
19 PRK10049 pgaA outer membrane p 99.9 3E-17 6.5E-22 164.7 41.8 368 6-380 49-464 (765)
20 PRK09782 bacteriophage N4 rece 99.8 1.8E-16 3.9E-21 159.5 44.3 392 2-407 177-707 (987)
21 TIGR00990 3a0801s09 mitochondr 99.8 6E-17 1.3E-21 159.7 39.2 365 3-377 157-576 (615)
22 PRK14574 hmsH outer membrane p 99.8 3.6E-16 7.9E-21 154.2 44.1 387 15-406 43-513 (822)
23 PRK09782 bacteriophage N4 rece 99.8 2.9E-15 6.3E-20 150.9 44.3 394 4-408 245-742 (987)
24 PRK14574 hmsH outer membrane p 99.8 3.9E-15 8.4E-20 147.0 42.1 352 51-406 43-479 (822)
25 KOG2002 TPR-containing nuclear 99.8 6E-16 1.3E-20 146.7 31.2 402 4-408 268-747 (1018)
26 KOG2002 TPR-containing nuclear 99.8 2.9E-15 6.2E-20 142.2 31.3 383 20-408 250-711 (1018)
27 KOG2003 TPR repeat-containing 99.7 4.1E-15 9E-20 129.7 25.9 204 185-392 501-709 (840)
28 PF13429 TPR_15: Tetratricopep 99.7 3E-17 6.6E-22 145.6 10.7 257 144-405 13-276 (280)
29 KOG2003 TPR repeat-containing 99.7 2.6E-14 5.7E-19 124.7 26.2 183 221-406 502-689 (840)
30 KOG0547 Translocase of outer m 99.7 8.6E-14 1.9E-18 122.6 29.5 378 9-405 118-565 (606)
31 KOG2076 RNA polymerase III tra 99.7 1.6E-13 3.4E-18 129.7 32.0 328 87-417 149-523 (895)
32 KOG1915 Cell cycle control pro 99.7 1.2E-12 2.5E-17 115.2 33.4 418 17-444 84-534 (677)
33 KOG0495 HAT repeat protein [RN 99.7 7.3E-12 1.6E-16 114.5 37.9 407 5-421 439-893 (913)
34 PRK10747 putative protoheme IX 99.7 5.5E-13 1.2E-17 123.8 30.5 283 55-372 97-390 (398)
35 PRK10747 putative protoheme IX 99.7 7.1E-13 1.5E-17 123.1 31.2 275 121-405 97-389 (398)
36 KOG4422 Uncharacterized conser 99.6 1.9E-11 4.1E-16 106.4 36.2 395 7-408 117-592 (625)
37 KOG4422 Uncharacterized conser 99.6 4.2E-12 9.2E-17 110.4 32.0 335 5-374 206-592 (625)
38 KOG1155 Anaphase-promoting com 99.6 4.2E-12 9.1E-17 111.5 32.2 328 73-405 160-494 (559)
39 KOG0495 HAT repeat protein [RN 99.6 2.9E-11 6.4E-16 110.6 37.7 393 15-417 415-855 (913)
40 PF13429 TPR_15: Tetratricopep 99.6 6.1E-15 1.3E-19 130.9 13.0 252 49-303 15-276 (280)
41 TIGR00540 hemY_coli hemY prote 99.6 2.4E-12 5.3E-17 120.2 29.3 289 53-372 95-399 (409)
42 TIGR00540 hemY_coli hemY prote 99.6 6.6E-12 1.4E-16 117.3 32.1 279 120-405 96-398 (409)
43 KOG1126 DNA-binding cell divis 99.6 3.9E-13 8.4E-18 123.3 22.7 276 122-407 333-621 (638)
44 KOG2076 RNA polymerase III tra 99.6 2.4E-11 5.2E-16 115.3 34.0 312 19-337 152-509 (895)
45 KOG1126 DNA-binding cell divis 99.6 4.9E-13 1.1E-17 122.6 21.4 276 92-377 334-625 (638)
46 KOG1173 Anaphase-promoting com 99.6 1.8E-11 3.8E-16 110.3 29.9 259 141-405 246-517 (611)
47 COG2956 Predicted N-acetylgluc 99.6 2.1E-11 4.6E-16 102.3 27.7 281 56-371 49-346 (389)
48 KOG1915 Cell cycle control pro 99.5 3.2E-10 6.8E-15 100.2 35.1 395 4-408 105-538 (677)
49 COG3071 HemY Uncharacterized e 99.5 9.2E-11 2E-15 101.6 30.0 284 54-372 96-390 (400)
50 COG2956 Predicted N-acetylgluc 99.5 3.4E-11 7.4E-16 101.1 25.1 306 90-426 48-367 (389)
51 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.5E-15 100.1 28.2 281 121-409 97-393 (400)
52 KOG1155 Anaphase-promoting com 99.5 5.7E-10 1.2E-14 98.4 31.7 353 41-405 163-535 (559)
53 TIGR02521 type_IV_pilW type IV 99.5 3E-11 6.6E-16 104.4 23.3 197 209-406 31-232 (234)
54 KOG1840 Kinesin light chain [C 99.5 5.1E-11 1.1E-15 110.4 24.6 231 175-405 200-478 (508)
55 KOG2376 Signal recognition par 99.4 8.3E-09 1.8E-13 93.9 33.9 382 13-403 19-517 (652)
56 KOG4318 Bicoid mRNA stability 99.4 2.7E-11 5.9E-16 114.5 18.9 265 160-464 11-276 (1088)
57 KOG4318 Bicoid mRNA stability 99.4 1.3E-10 2.8E-15 110.1 22.9 333 28-390 12-392 (1088)
58 PF13041 PPR_2: PPR repeat fam 99.4 5.5E-13 1.2E-17 83.3 4.8 50 4-54 1-50 (50)
59 KOG1129 TPR repeat-containing 99.4 4.2E-11 9E-16 100.7 17.2 224 178-406 227-458 (478)
60 PRK12370 invasion protein regu 99.4 3.3E-10 7.2E-15 110.0 25.8 261 138-408 255-537 (553)
61 TIGR02521 type_IV_pilW type IV 99.4 1.5E-10 3.3E-15 100.0 20.8 192 42-236 31-230 (234)
62 PRK12370 invasion protein regu 99.4 3.3E-10 7.2E-15 110.1 24.8 257 40-304 254-535 (553)
63 KOG3785 Uncharacterized conser 99.4 1.9E-09 4.1E-14 92.0 25.3 394 13-418 29-499 (557)
64 PF13041 PPR_2: PPR repeat fam 99.3 3.9E-12 8.4E-17 79.4 6.8 50 137-186 1-50 (50)
65 PF12569 NARP1: NMDA receptor- 99.3 1.5E-08 3.2E-13 95.4 33.6 286 13-302 11-332 (517)
66 KOG1174 Anaphase-promoting com 99.3 1E-07 2.2E-12 83.4 35.0 282 119-407 207-501 (564)
67 KOG1173 Anaphase-promoting com 99.3 1.2E-09 2.7E-14 98.7 24.1 267 52-354 254-533 (611)
68 KOG1174 Anaphase-promoting com 99.3 6.2E-09 1.3E-13 90.7 27.0 268 107-380 231-508 (564)
69 KOG4162 Predicted calmodulin-b 99.3 6.2E-09 1.3E-13 97.7 28.7 396 5-408 322-785 (799)
70 KOG1156 N-terminal acetyltrans 99.3 3.6E-08 7.8E-13 90.9 32.9 394 7-408 9-470 (700)
71 KOG2047 mRNA splicing factor [ 99.3 2.2E-08 4.8E-13 92.1 30.9 174 7-186 103-293 (835)
72 KOG0547 Translocase of outer m 99.3 3.5E-08 7.6E-13 88.0 30.1 359 3-373 145-567 (606)
73 KOG1129 TPR repeat-containing 99.3 4.6E-10 9.9E-15 94.6 16.5 231 143-378 227-464 (478)
74 PRK11189 lipoprotein NlpI; Pro 99.3 1.8E-09 3.9E-14 96.1 21.2 88 213-302 68-159 (296)
75 KOG0624 dsRNA-activated protei 99.2 3.2E-08 7E-13 84.3 26.1 307 76-407 37-371 (504)
76 KOG1840 Kinesin light chain [C 99.2 3.8E-09 8.2E-14 98.2 21.8 224 79-302 201-477 (508)
77 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.8E-13 89.8 25.2 217 153-377 40-270 (296)
78 KOG4340 Uncharacterized conser 99.2 8.9E-08 1.9E-12 80.1 27.0 385 8-405 12-442 (459)
79 COG3063 PilF Tfp pilus assembl 99.2 3.1E-09 6.8E-14 85.5 17.7 162 243-408 38-204 (250)
80 KOG2376 Signal recognition par 99.2 8E-07 1.7E-11 81.4 34.1 356 45-406 15-487 (652)
81 KOG1156 N-terminal acetyltrans 99.2 7.6E-07 1.6E-11 82.4 34.2 378 17-403 52-508 (700)
82 PF12569 NARP1: NMDA receptor- 99.2 8.5E-08 1.8E-12 90.4 28.8 281 118-405 14-333 (517)
83 KOG0548 Molecular co-chaperone 99.2 1.6E-07 3.5E-12 85.0 28.6 374 14-407 10-456 (539)
84 cd05804 StaR_like StaR_like; a 99.1 7E-07 1.5E-11 82.6 30.9 257 147-407 51-337 (355)
85 COG3063 PilF Tfp pilus assembl 99.1 6.1E-08 1.3E-12 78.2 20.1 193 212-405 38-235 (250)
86 KOG2047 mRNA splicing factor [ 99.1 5.1E-06 1.1E-10 77.1 34.8 389 7-405 139-614 (835)
87 PF04733 Coatomer_E: Coatomer 99.1 7.8E-09 1.7E-13 90.7 16.0 80 326-405 182-264 (290)
88 PF04733 Coatomer_E: Coatomer 99.1 3.1E-08 6.7E-13 86.9 19.2 250 117-377 10-270 (290)
89 KOG0624 dsRNA-activated protei 99.0 8.9E-07 1.9E-11 75.7 26.5 317 40-380 36-378 (504)
90 KOG1125 TPR repeat-containing 99.0 1.2E-08 2.6E-13 92.9 16.0 220 184-406 295-527 (579)
91 KOG4162 Predicted calmodulin-b 99.0 4.4E-06 9.5E-11 79.1 31.5 366 7-378 358-789 (799)
92 KOG3616 Selective LIM binding 99.0 4.4E-07 9.6E-12 85.1 24.3 168 182-368 740-907 (1636)
93 KOG4340 Uncharacterized conser 99.0 4.5E-07 9.8E-12 76.0 21.4 302 80-402 13-335 (459)
94 KOG3785 Uncharacterized conser 98.9 4E-06 8.6E-11 72.2 26.8 348 49-403 29-454 (557)
95 PRK04841 transcriptional regul 98.9 5.4E-06 1.2E-10 86.8 33.6 324 85-408 382-762 (903)
96 KOG3617 WD40 and TPR repeat-co 98.9 1.5E-05 3.2E-10 76.1 32.3 182 53-266 811-993 (1416)
97 cd05804 StaR_like StaR_like; a 98.9 5.3E-06 1.2E-10 76.7 29.7 195 7-202 7-214 (355)
98 KOG0985 Vesicle coat protein c 98.9 9.2E-06 2E-10 79.2 31.0 209 173-402 983-1245(1666)
99 KOG3616 Selective LIM binding 98.9 3E-06 6.4E-11 79.8 26.0 168 13-200 739-908 (1636)
100 KOG3617 WD40 and TPR repeat-co 98.9 1.5E-06 3.2E-11 82.7 23.9 335 41-405 725-1108(1416)
101 KOG0985 Vesicle coat protein c 98.9 3.7E-05 8E-10 75.2 32.8 293 5-337 983-1305(1666)
102 PRK10370 formate-dependent nit 98.8 4.4E-07 9.5E-12 75.2 17.1 148 247-408 23-175 (198)
103 KOG1125 TPR repeat-containing 98.8 4.8E-07 1.1E-11 82.7 18.5 248 147-399 293-564 (579)
104 PRK04841 transcriptional regul 98.8 5.5E-06 1.2E-10 86.8 29.2 323 52-375 384-763 (903)
105 TIGR03302 OM_YfiO outer membra 98.8 6.1E-07 1.3E-11 77.5 18.4 182 207-406 31-232 (235)
106 KOG1070 rRNA processing protei 98.8 1.2E-06 2.6E-11 87.9 21.3 201 206-410 1455-1667(1710)
107 KOG1127 TPR repeat-containing 98.8 5.4E-06 1.2E-10 80.7 24.6 372 21-402 473-909 (1238)
108 KOG0548 Molecular co-chaperone 98.8 3.4E-05 7.5E-10 70.3 28.2 370 3-390 33-473 (539)
109 PRK15359 type III secretion sy 98.7 2.3E-07 5E-12 72.7 12.3 94 314-407 27-122 (144)
110 KOG2053 Mitochondrial inherita 98.7 0.00017 3.6E-09 70.0 33.1 215 17-237 20-254 (932)
111 PLN02789 farnesyltranstransfer 98.7 5.9E-06 1.3E-10 73.6 21.9 187 225-416 88-310 (320)
112 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.9E-13 56.3 3.3 31 3-33 4-34 (34)
113 KOG1070 rRNA processing protei 98.7 6.5E-06 1.4E-10 82.8 22.8 218 76-294 1457-1690(1710)
114 PRK15179 Vi polysaccharide bio 98.7 3.7E-06 8E-11 82.6 20.7 158 239-407 85-246 (694)
115 PRK15359 type III secretion sy 98.7 1.9E-06 4E-11 67.6 15.3 123 261-389 14-138 (144)
116 KOG1128 Uncharacterized conser 98.7 1.6E-05 3.5E-10 75.0 23.5 189 205-408 394-584 (777)
117 KOG1127 TPR repeat-containing 98.7 3E-05 6.5E-10 75.7 25.8 162 239-405 816-995 (1238)
118 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 54.2 4.4 32 72-103 2-33 (34)
119 KOG3081 Vesicle coat complex C 98.6 8.5E-05 1.8E-09 61.8 23.9 155 215-376 114-275 (299)
120 COG5010 TadD Flp pilus assembl 98.6 6.8E-06 1.5E-10 68.1 17.7 155 244-401 70-226 (257)
121 KOG1128 Uncharacterized conser 98.6 5.1E-06 1.1E-10 78.3 17.7 212 178-408 402-618 (777)
122 TIGR03302 OM_YfiO outer membra 98.6 7.3E-06 1.6E-10 70.8 17.9 182 172-374 31-234 (235)
123 PRK10370 formate-dependent nit 98.5 1.8E-05 4E-10 65.6 18.5 154 215-380 22-181 (198)
124 KOG1914 mRNA cleavage and poly 98.5 0.00071 1.5E-08 62.1 35.5 384 3-394 17-527 (656)
125 COG5010 TadD Flp pilus assembl 98.5 1.1E-05 2.5E-10 66.8 16.8 135 272-408 63-199 (257)
126 PLN02789 farnesyltranstransfer 98.5 0.00018 3.9E-09 64.3 25.2 226 144-375 42-305 (320)
127 PRK15363 pathogenicity island 98.5 4E-06 8.8E-11 64.6 12.6 119 311-452 35-155 (157)
128 KOG3081 Vesicle coat complex C 98.5 2.6E-05 5.6E-10 64.8 17.9 244 146-405 15-270 (299)
129 PRK14720 transcript cleavage f 98.5 4.4E-05 9.6E-10 76.1 22.9 46 343-388 223-268 (906)
130 KOG1914 mRNA cleavage and poly 98.5 0.0011 2.4E-08 60.9 30.2 367 39-410 17-468 (656)
131 TIGR02552 LcrH_SycD type III s 98.5 3.7E-06 8E-11 65.6 12.0 97 311-407 17-115 (135)
132 COG4783 Putative Zn-dependent 98.5 6.3E-05 1.4E-09 68.1 20.7 139 248-407 314-455 (484)
133 PRK14720 transcript cleavage f 98.5 0.00012 2.7E-09 73.1 24.5 234 42-322 31-268 (906)
134 COG4783 Putative Zn-dependent 98.4 0.00013 2.8E-09 66.1 22.3 127 277-406 309-437 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.8E-06 2.1E-10 73.8 14.3 123 277-404 171-295 (395)
136 KOG3060 Uncharacterized conser 98.4 0.0002 4.4E-09 59.2 20.1 166 214-382 57-230 (289)
137 PRK15179 Vi polysaccharide bio 98.4 0.00016 3.5E-09 71.4 23.2 144 204-350 81-229 (694)
138 KOG3060 Uncharacterized conser 98.4 0.00012 2.7E-09 60.4 18.1 163 242-408 54-222 (289)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3E-05 6.5E-10 70.6 16.0 127 210-340 170-297 (395)
140 TIGR02552 LcrH_SycD type III s 98.3 3.5E-05 7.5E-10 60.0 13.7 115 262-380 5-122 (135)
141 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.7E-11 49.7 3.7 35 7-42 1-35 (35)
142 PF09976 TPR_21: Tetratricopep 98.2 6.2E-05 1.3E-09 59.3 13.8 115 288-403 24-144 (145)
143 PF09976 TPR_21: Tetratricopep 98.2 6.8E-05 1.5E-09 59.0 13.5 122 8-133 14-143 (145)
144 PF13812 PPR_3: Pentatricopept 98.2 1.9E-06 4.2E-11 48.5 3.4 34 6-40 1-34 (34)
145 PF13414 TPR_11: TPR repeat; P 98.2 7E-06 1.5E-10 55.2 6.7 64 342-405 2-66 (69)
146 TIGR00756 PPR pentatricopeptid 98.2 3.1E-06 6.6E-11 48.0 4.2 34 141-174 2-35 (35)
147 PF12895 Apc3: Anaphase-promot 98.2 3E-06 6.5E-11 59.6 4.7 78 324-402 2-83 (84)
148 cd00189 TPR Tetratricopeptide 98.1 3.5E-05 7.7E-10 55.5 10.3 93 314-406 3-97 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 5.2E-05 1.1E-09 57.4 11.4 94 314-407 5-106 (119)
150 PF13812 PPR_3: Pentatricopept 98.1 5.2E-06 1.1E-10 46.7 4.3 33 140-172 2-34 (34)
151 PF13432 TPR_16: Tetratricopep 98.1 9.8E-06 2.1E-10 53.7 6.2 59 349-407 3-61 (65)
152 PF14938 SNAP: Soluble NSF att 98.1 0.0026 5.7E-08 56.4 22.3 108 242-350 157-275 (282)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00014 3E-09 55.1 12.2 106 277-382 4-115 (119)
154 KOG0550 Molecular chaperone (D 98.0 0.00034 7.3E-09 62.0 14.4 266 116-409 57-353 (486)
155 PLN03088 SGT1, suppressor of 98.0 9.8E-05 2.1E-09 67.6 11.7 108 281-390 8-117 (356)
156 KOG0553 TPR repeat-containing 97.9 0.00012 2.5E-09 62.2 10.3 104 285-391 91-197 (304)
157 PF14559 TPR_19: Tetratricopep 97.9 2E-05 4.3E-10 52.8 4.6 54 354-407 2-55 (68)
158 COG4235 Cytochrome c biogenesi 97.9 0.00042 9.1E-09 59.3 13.4 105 308-412 153-262 (287)
159 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 43.7 3.2 30 7-37 1-30 (31)
160 PRK10866 outer membrane biogen 97.9 0.0023 5E-08 55.0 18.0 58 47-105 37-97 (243)
161 KOG2041 WD40 repeat protein [G 97.9 0.026 5.6E-07 54.0 26.4 183 40-238 690-907 (1189)
162 PLN03088 SGT1, suppressor of 97.9 0.00035 7.6E-09 64.0 13.8 100 246-349 8-109 (356)
163 PRK02603 photosystem I assembl 97.9 0.00026 5.7E-09 57.6 11.6 81 312-392 36-121 (172)
164 CHL00033 ycf3 photosystem I as 97.9 0.00026 5.6E-09 57.4 11.2 94 311-404 35-140 (168)
165 PF14938 SNAP: Soluble NSF att 97.8 0.0025 5.4E-08 56.5 18.1 53 115-167 121-183 (282)
166 PRK15331 chaperone protein Sic 97.8 0.00094 2E-08 52.0 12.8 89 317-405 43-133 (165)
167 PF13371 TPR_9: Tetratricopept 97.8 9.7E-05 2.1E-09 50.2 6.9 59 350-408 2-60 (73)
168 KOG1538 Uncharacterized conser 97.8 0.0065 1.4E-07 57.3 20.3 58 40-103 554-611 (1081)
169 PRK10866 outer membrane biogen 97.8 0.0075 1.6E-07 51.9 19.8 173 215-404 38-239 (243)
170 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.4E-10 42.4 3.4 30 141-170 2-31 (31)
171 PF12895 Apc3: Anaphase-promot 97.8 7.8E-05 1.7E-09 52.3 6.2 79 253-335 2-82 (84)
172 KOG2280 Vacuolar assembly/sort 97.8 0.043 9.4E-07 53.0 26.2 115 272-402 681-795 (829)
173 PF05843 Suf: Suppressor of fo 97.8 0.0014 3E-08 57.9 14.8 133 242-377 3-141 (280)
174 PF07079 DUF1347: Protein of u 97.8 0.031 6.7E-07 50.7 30.4 375 16-404 16-522 (549)
175 cd00189 TPR Tetratricopeptide 97.7 0.00045 9.8E-09 49.4 10.2 89 284-374 9-99 (100)
176 KOG0553 TPR repeat-containing 97.7 0.0001 2.2E-09 62.6 7.1 88 319-406 89-178 (304)
177 COG4700 Uncharacterized protei 97.7 0.011 2.3E-07 46.9 17.1 134 271-406 85-222 (251)
178 KOG1130 Predicted G-alpha GTPa 97.7 0.00049 1.1E-08 61.0 10.9 130 277-406 197-344 (639)
179 PRK02603 photosystem I assembl 97.7 0.00075 1.6E-08 54.9 11.5 110 45-154 38-166 (172)
180 PRK10153 DNA-binding transcrip 97.7 0.0033 7.2E-08 60.3 17.1 65 342-407 419-483 (517)
181 PRK15363 pathogenicity island 97.7 0.0019 4.2E-08 50.1 12.4 90 112-202 39-131 (157)
182 PF13432 TPR_16: Tetratricopep 97.7 0.00018 4E-09 47.5 6.1 61 317-377 3-65 (65)
183 PF04840 Vps16_C: Vps16, C-ter 97.6 0.041 8.9E-07 49.3 25.3 110 277-403 179-288 (319)
184 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3E-08 47.2 10.3 81 141-221 27-116 (120)
185 KOG1538 Uncharacterized conser 97.6 0.014 3.1E-07 55.1 19.4 71 223-302 730-800 (1081)
186 PF08579 RPM2: Mitochondrial r 97.6 0.00063 1.4E-08 48.8 8.3 78 11-89 30-116 (120)
187 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 61.0 12.2 106 209-315 66-177 (429)
188 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.054 1.2E-06 49.2 29.0 133 241-376 398-535 (660)
189 PF10037 MRP-S27: Mitochondria 97.6 0.001 2.3E-08 61.1 11.7 111 111-221 69-185 (429)
190 KOG2796 Uncharacterized conser 97.6 0.013 2.8E-07 49.1 16.6 129 141-269 179-315 (366)
191 COG4700 Uncharacterized protei 97.6 0.021 4.5E-07 45.3 16.8 99 171-269 86-189 (251)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.003 6.6E-08 47.2 11.9 91 145-235 7-101 (120)
193 KOG2053 Mitochondrial inherita 97.5 0.11 2.3E-06 51.4 38.5 191 9-204 44-256 (932)
194 PF13281 DUF4071: Domain of un 97.5 0.014 3.1E-07 52.7 17.5 160 214-376 146-338 (374)
195 PF13431 TPR_17: Tetratricopep 97.5 0.0001 2.3E-09 41.0 2.4 33 366-398 2-34 (34)
196 PF14559 TPR_19: Tetratricopep 97.5 0.00019 4.1E-09 48.0 4.1 49 287-337 3-51 (68)
197 CHL00033 ycf3 photosystem I as 97.5 0.0055 1.2E-07 49.6 13.4 63 141-203 37-101 (168)
198 PRK10803 tol-pal system protei 97.5 0.0014 3.1E-08 56.7 10.4 93 314-406 146-246 (263)
199 PF05843 Suf: Suppressor of fo 97.4 0.0023 5E-08 56.5 11.9 129 276-406 2-136 (280)
200 PRK10153 DNA-binding transcrip 97.4 0.0076 1.7E-07 57.9 16.1 141 238-380 335-490 (517)
201 PF13414 TPR_11: TPR repeat; P 97.4 0.00058 1.3E-08 45.7 5.8 65 310-374 2-69 (69)
202 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0011 2.4E-08 60.5 9.0 65 342-406 74-141 (453)
203 PF13525 YfiO: Outer membrane 97.4 0.012 2.5E-07 49.3 14.6 180 5-191 4-195 (203)
204 PF12688 TPR_5: Tetratrico pep 97.3 0.011 2.3E-07 44.3 12.5 93 245-337 6-101 (120)
205 KOG0550 Molecular chaperone (D 97.3 0.11 2.3E-06 46.8 20.4 81 51-132 58-141 (486)
206 PF13428 TPR_14: Tetratricopep 97.3 0.00052 1.1E-08 41.0 4.3 42 344-385 2-43 (44)
207 PF13424 TPR_12: Tetratricopep 97.3 0.0006 1.3E-08 47.0 5.1 63 343-405 5-74 (78)
208 PF06239 ECSIT: Evolutionarily 97.3 0.0045 9.7E-08 50.5 10.4 96 129-224 35-153 (228)
209 COG3898 Uncharacterized membra 97.3 0.13 2.8E-06 46.0 29.1 283 111-406 85-392 (531)
210 PF07079 DUF1347: Protein of u 97.2 0.15 3.3E-06 46.5 24.2 29 175-203 299-327 (549)
211 KOG2796 Uncharacterized conser 97.2 0.045 9.7E-07 46.0 15.9 133 242-375 179-318 (366)
212 PF03704 BTAD: Bacterial trans 97.2 0.01 2.2E-07 46.7 12.2 113 286-412 17-136 (146)
213 KOG1130 Predicted G-alpha GTPa 97.2 0.0013 2.8E-08 58.4 7.1 252 14-267 25-342 (639)
214 PF04840 Vps16_C: Vps16, C-ter 97.2 0.16 3.6E-06 45.5 28.9 107 243-367 180-286 (319)
215 KOG0543 FKBP-type peptidyl-pro 97.2 0.0099 2.1E-07 53.2 12.3 95 312-406 258-355 (397)
216 PRK10803 tol-pal system protei 97.1 0.014 3E-07 50.7 12.9 99 277-378 145-252 (263)
217 PF06239 ECSIT: Evolutionarily 97.1 0.0076 1.6E-07 49.2 10.1 89 237-326 44-153 (228)
218 PF13525 YfiO: Outer membrane 97.1 0.14 2.9E-06 42.9 18.6 50 281-330 147-197 (203)
219 PF09205 DUF1955: Domain of un 97.1 0.03 6.5E-07 41.6 12.0 141 250-409 12-152 (161)
220 PF13371 TPR_9: Tetratricopept 97.0 0.003 6.6E-08 42.7 6.4 63 319-381 3-67 (73)
221 KOG0543 FKBP-type peptidyl-pro 97.0 0.0093 2E-07 53.3 10.4 65 343-407 257-321 (397)
222 COG4235 Cytochrome c biogenesi 96.7 0.022 4.8E-07 49.1 10.7 122 23-147 139-268 (287)
223 KOG1258 mRNA processing protei 96.7 0.55 1.2E-05 44.7 26.6 376 7-391 46-489 (577)
224 PF13512 TPR_18: Tetratricopep 96.7 0.052 1.1E-06 41.5 11.5 90 317-406 16-128 (142)
225 PF13424 TPR_12: Tetratricopep 96.7 0.016 3.4E-07 39.8 8.1 66 78-167 6-74 (78)
226 KOG2280 Vacuolar assembly/sort 96.6 0.75 1.6E-05 44.9 28.1 109 242-367 686-794 (829)
227 PF12921 ATP13: Mitochondrial 96.5 0.044 9.5E-07 41.4 9.9 54 269-322 46-99 (126)
228 PF04053 Coatomer_WDAD: Coatom 96.5 0.14 3E-06 48.3 15.2 153 18-197 273-425 (443)
229 COG3898 Uncharacterized membra 96.4 0.65 1.4E-05 41.8 28.0 112 55-167 97-216 (531)
230 PF10300 DUF3808: Protein of u 96.4 0.29 6.4E-06 46.8 17.2 161 243-406 191-376 (468)
231 PF13281 DUF4071: Domain of un 96.4 0.74 1.6E-05 41.9 18.3 31 273-303 303-333 (374)
232 COG3118 Thioredoxin domain-con 96.3 0.57 1.2E-05 40.5 16.4 145 249-395 143-290 (304)
233 PF12921 ATP13: Mitochondrial 96.3 0.089 1.9E-06 39.8 10.4 82 5-86 1-97 (126)
234 PRK11906 transcriptional regul 96.2 0.076 1.6E-06 49.0 11.2 64 342-405 337-400 (458)
235 KOG1941 Acetylcholine receptor 96.2 0.071 1.5E-06 47.0 10.4 124 280-403 127-272 (518)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.046 1E-06 50.2 9.6 63 310-372 74-141 (453)
237 PF03704 BTAD: Bacterial trans 96.1 0.083 1.8E-06 41.5 9.8 70 142-212 65-139 (146)
238 KOG4555 TPR repeat-containing 96.0 0.096 2.1E-06 38.9 8.9 90 319-408 51-146 (175)
239 KOG2041 WD40 repeat protein [G 95.9 1.9 4.1E-05 42.0 24.1 128 19-162 747-875 (1189)
240 PF04053 Coatomer_WDAD: Coatom 95.9 0.91 2E-05 42.9 17.2 157 52-234 271-427 (443)
241 KOG1585 Protein required for f 95.9 0.9 2E-05 38.1 16.8 85 314-399 153-249 (308)
242 COG1729 Uncharacterized protei 95.8 0.1 2.2E-06 44.5 9.7 82 323-406 153-244 (262)
243 PF07719 TPR_2: Tetratricopept 95.8 0.036 7.8E-07 30.6 4.9 32 345-376 3-34 (34)
244 KOG2610 Uncharacterized conser 95.7 0.34 7.5E-06 42.5 12.3 143 222-368 116-272 (491)
245 PF13512 TPR_18: Tetratricopep 95.7 0.59 1.3E-05 35.9 12.3 116 246-377 16-133 (142)
246 COG1729 Uncharacterized protei 95.7 0.21 4.6E-06 42.6 10.9 102 277-379 144-251 (262)
247 KOG3941 Intermediate in Toll s 95.6 0.073 1.6E-06 45.3 7.8 101 3-104 64-186 (406)
248 PF00515 TPR_1: Tetratricopept 95.6 0.034 7.4E-07 30.7 4.2 32 344-375 2-33 (34)
249 smart00299 CLH Clathrin heavy 95.5 0.85 1.8E-05 35.4 15.2 45 9-55 10-54 (140)
250 PRK11906 transcriptional regul 95.5 1.3 2.8E-05 41.3 15.9 143 256-401 274-431 (458)
251 PRK15331 chaperone protein Sic 95.4 0.3 6.5E-06 38.4 10.2 81 221-302 49-132 (165)
252 PF04184 ST7: ST7 protein; In 95.4 2.4 5.2E-05 39.8 17.5 59 244-302 263-322 (539)
253 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.2 4.8E-05 39.3 29.7 127 276-404 398-529 (660)
254 PF02259 FAT: FAT domain; Int 95.3 2.4 5.2E-05 39.0 20.4 148 240-390 146-305 (352)
255 COG0457 NrfG FOG: TPR repeat [ 95.3 1.6 3.5E-05 36.9 26.9 162 243-406 98-265 (291)
256 COG4105 ComL DNA uptake lipopr 95.1 1.8 3.9E-05 36.8 19.1 149 53-202 45-232 (254)
257 PF09205 DUF1955: Domain of un 95.1 1 2.2E-05 33.8 13.1 137 54-205 14-151 (161)
258 KOG1941 Acetylcholine receptor 95.1 0.61 1.3E-05 41.5 12.0 162 141-302 85-273 (518)
259 KOG4234 TPR repeat-containing 95.0 0.17 3.7E-06 40.9 7.8 57 350-406 141-197 (271)
260 PF10300 DUF3808: Protein of u 95.0 1.3 2.8E-05 42.5 15.3 157 45-202 191-375 (468)
261 smart00299 CLH Clathrin heavy 95.0 1.3 2.8E-05 34.4 16.3 112 44-164 9-121 (140)
262 COG4649 Uncharacterized protei 95.0 0.75 1.6E-05 36.3 11.0 46 222-267 71-121 (221)
263 PF13176 TPR_7: Tetratricopept 95.0 0.059 1.3E-06 30.3 3.9 26 379-404 1-26 (36)
264 KOG2610 Uncharacterized conser 95.0 0.34 7.4E-06 42.5 10.1 160 251-413 114-283 (491)
265 KOG3941 Intermediate in Toll s 94.9 0.35 7.6E-06 41.3 9.9 107 129-235 55-185 (406)
266 COG3629 DnrI DNA-binding trans 94.9 0.18 3.8E-06 43.8 8.4 63 343-405 153-215 (280)
267 PF00637 Clathrin: Region in C 94.9 0.059 1.3E-06 42.2 5.3 86 47-135 12-97 (143)
268 COG4105 ComL DNA uptake lipopr 94.9 2.1 4.6E-05 36.4 19.0 59 349-408 173-234 (254)
269 PF08631 SPO22: Meiosis protei 94.8 2.7 5.8E-05 37.3 21.0 119 17-136 4-149 (278)
270 COG3947 Response regulator con 94.8 2.1 4.5E-05 37.1 13.9 60 346-405 282-341 (361)
271 PF07035 Mic1: Colon cancer-as 94.7 1.5 3.2E-05 35.0 12.4 132 64-203 16-149 (167)
272 PF02259 FAT: FAT domain; Int 94.7 3.3 7.1E-05 38.1 17.2 69 341-409 144-216 (352)
273 COG0457 NrfG FOG: TPR repeat [ 94.7 2.3 5E-05 35.9 26.6 199 175-375 60-268 (291)
274 KOG2114 Vacuolar assembly/sort 94.5 2.1 4.6E-05 42.6 15.3 175 178-368 338-515 (933)
275 KOG1258 mRNA processing protei 94.5 4.7 0.0001 38.7 25.9 128 40-168 43-180 (577)
276 KOG1585 Protein required for f 94.5 2.6 5.5E-05 35.6 15.3 203 142-367 34-251 (308)
277 PRK11619 lytic murein transgly 94.4 6.2 0.00013 39.6 31.9 117 289-405 255-374 (644)
278 KOG1920 IkappaB kinase complex 94.4 7.8 0.00017 40.6 20.9 141 212-368 911-1051(1265)
279 PF08631 SPO22: Meiosis protei 94.4 3.5 7.5E-05 36.5 23.7 19 352-370 255-273 (278)
280 KOG4555 TPR repeat-containing 94.1 0.21 4.5E-06 37.2 6.0 58 350-407 50-107 (175)
281 KOG0890 Protein kinase of the 93.9 14 0.0003 41.9 24.2 148 47-198 1388-1542(2382)
282 COG3118 Thioredoxin domain-con 93.9 4 8.7E-05 35.6 17.6 140 182-325 142-286 (304)
283 PF13428 TPR_14: Tetratricopep 93.9 0.18 3.9E-06 29.8 4.6 25 9-33 4-28 (44)
284 KOG0890 Protein kinase of the 93.8 15 0.00032 41.8 24.1 311 82-408 1388-1733(2382)
285 PF07035 Mic1: Colon cancer-as 93.7 2.9 6.2E-05 33.4 13.3 135 25-168 13-149 (167)
286 PF13181 TPR_8: Tetratricopept 93.7 0.17 3.6E-06 27.8 4.0 30 345-374 3-32 (34)
287 PF13176 TPR_7: Tetratricopept 93.7 0.15 3.3E-06 28.6 3.8 28 345-372 1-28 (36)
288 PF04184 ST7: ST7 protein; In 93.6 2.1 4.4E-05 40.2 12.6 121 343-463 259-386 (539)
289 KOG1920 IkappaB kinase complex 93.4 12 0.00025 39.4 18.3 23 380-402 1187-1209(1265)
290 PF10602 RPN7: 26S proteasome 93.3 2.6 5.7E-05 34.2 11.7 96 242-337 38-139 (177)
291 KOG1464 COP9 signalosome, subu 93.2 2 4.4E-05 36.7 11.0 183 223-405 41-260 (440)
292 TIGR02561 HrpB1_HrpK type III 93.1 0.85 1.8E-05 35.1 7.9 50 356-405 23-72 (153)
293 PF04097 Nic96: Nup93/Nic96; 92.9 8.2 0.00018 38.6 16.9 62 10-73 115-183 (613)
294 PF07719 TPR_2: Tetratricopept 92.9 0.21 4.6E-06 27.3 3.6 29 378-406 2-30 (34)
295 PF09613 HrpB1_HrpK: Bacterial 92.8 1.1 2.3E-05 35.3 8.3 72 322-393 21-94 (160)
296 KOG2114 Vacuolar assembly/sort 92.5 13 0.00028 37.5 27.3 137 17-165 379-516 (933)
297 PF13431 TPR_17: Tetratricopep 92.2 0.3 6.6E-06 26.9 3.5 32 65-97 2-33 (34)
298 PF00515 TPR_1: Tetratricopept 92.0 0.32 6.9E-06 26.7 3.6 29 378-406 2-30 (34)
299 PF07721 TPR_4: Tetratricopept 92.0 0.25 5.5E-06 25.2 2.9 24 378-401 2-25 (26)
300 PF09613 HrpB1_HrpK: Bacterial 92.0 5 0.00011 31.6 11.2 88 284-374 19-108 (160)
301 KOG3364 Membrane protein invol 91.9 3.1 6.8E-05 31.5 9.4 47 359-405 51-99 (149)
302 KOG1464 COP9 signalosome, subu 91.8 7.6 0.00017 33.3 18.7 232 142-379 68-339 (440)
303 PF13374 TPR_10: Tetratricopep 91.6 0.52 1.1E-05 27.2 4.4 27 345-371 4-30 (42)
304 PF13170 DUF4003: Protein of u 91.6 6.2 0.00013 35.2 12.8 48 58-105 78-131 (297)
305 KOG2396 HAT (Half-A-TPR) repea 91.6 12 0.00027 35.2 30.0 97 308-404 456-557 (568)
306 KOG1586 Protein required for f 91.6 7.5 0.00016 32.7 13.8 81 325-405 128-223 (288)
307 PF10602 RPN7: 26S proteasome 91.6 2 4.3E-05 35.0 9.0 60 44-103 38-99 (177)
308 COG4785 NlpI Lipoprotein NlpI, 91.5 7.1 0.00015 32.4 13.4 161 241-408 100-268 (297)
309 COG3629 DnrI DNA-binding trans 91.5 2.9 6.4E-05 36.5 10.4 78 140-218 154-236 (280)
310 KOG4570 Uncharacterized conser 91.5 1.9 4.2E-05 37.7 9.1 101 203-304 58-164 (418)
311 PF13174 TPR_6: Tetratricopept 91.5 0.48 1E-05 25.6 3.9 25 381-405 4-28 (33)
312 TIGR02508 type_III_yscG type I 91.3 3.9 8.5E-05 29.0 10.0 81 81-177 25-105 (115)
313 KOG2066 Vacuolar assembly/sort 91.0 19 0.0004 36.1 26.3 101 13-120 363-467 (846)
314 KOG4648 Uncharacterized conser 90.8 0.61 1.3E-05 41.1 5.6 112 281-399 103-217 (536)
315 PF13174 TPR_6: Tetratricopept 90.7 0.4 8.8E-06 25.9 3.1 25 346-370 3-27 (33)
316 PRK15180 Vi polysaccharide bio 90.7 5.4 0.00012 37.2 11.5 125 282-408 296-422 (831)
317 PF13374 TPR_10: Tetratricopep 90.6 0.56 1.2E-05 27.1 3.9 29 378-406 3-31 (42)
318 PF13181 TPR_8: Tetratricopept 90.1 0.78 1.7E-05 25.0 3.9 28 378-405 2-29 (34)
319 PF11207 DUF2989: Protein of u 89.5 4.2 9.1E-05 33.4 9.0 76 51-128 116-198 (203)
320 cd00923 Cyt_c_Oxidase_Va Cytoc 89.5 3.2 6.9E-05 29.3 7.1 63 255-319 22-84 (103)
321 KOG0276 Vesicle coat complex C 89.2 6.2 0.00013 38.0 11.0 130 79-233 616-745 (794)
322 KOG1550 Extracellular protein 89.2 25 0.00053 34.8 23.3 274 124-407 228-539 (552)
323 PF02284 COX5A: Cytochrome c o 89.1 4.1 8.8E-05 29.1 7.5 61 258-320 28-88 (108)
324 TIGR03504 FimV_Cterm FimV C-te 89.0 0.96 2.1E-05 26.7 3.8 28 381-408 3-30 (44)
325 KOG4648 Uncharacterized conser 88.8 1.5 3.2E-05 38.8 6.3 79 247-336 104-183 (536)
326 KOG0276 Vesicle coat complex C 88.7 12 0.00027 36.1 12.5 149 221-402 598-746 (794)
327 KOG4234 TPR repeat-containing 88.6 11 0.00024 30.9 10.5 121 285-407 105-234 (271)
328 PF14853 Fis1_TPR_C: Fis1 C-te 88.5 1.3 2.7E-05 27.5 4.3 34 347-380 5-38 (53)
329 PF13170 DUF4003: Protein of u 88.5 18 0.00038 32.3 15.1 134 155-318 78-224 (297)
330 PRK09687 putative lyase; Provi 88.4 17 0.00038 32.1 27.3 9 157-165 90-98 (280)
331 PF02284 COX5A: Cytochrome c o 88.2 4.6 0.0001 28.9 7.2 50 336-385 38-87 (108)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 4.3 9.4E-05 28.7 7.0 48 337-384 36-83 (103)
333 COG2909 MalT ATP-dependent tra 88.0 34 0.00073 35.0 19.7 194 220-417 426-658 (894)
334 COG4649 Uncharacterized protei 87.8 13 0.00027 29.8 14.0 55 250-304 142-196 (221)
335 PRK09687 putative lyase; Provi 87.8 19 0.00041 31.9 26.7 58 238-302 204-261 (280)
336 PF00637 Clathrin: Region in C 87.6 0.39 8.4E-06 37.5 2.1 83 180-265 13-95 (143)
337 KOG2066 Vacuolar assembly/sort 87.4 34 0.00074 34.4 24.9 167 52-240 366-536 (846)
338 COG2909 MalT ATP-dependent tra 87.1 38 0.00083 34.7 27.1 215 185-402 426-684 (894)
339 smart00028 TPR Tetratricopepti 86.8 1.4 3E-05 22.9 3.6 25 380-404 4-28 (34)
340 KOG4279 Serine/threonine prote 86.5 10 0.00022 37.7 10.8 184 141-377 203-400 (1226)
341 COG2976 Uncharacterized protei 86.5 16 0.00036 29.8 14.7 56 215-270 132-189 (207)
342 PF14853 Fis1_TPR_C: Fis1 C-te 86.2 6 0.00013 24.5 6.7 28 380-407 4-31 (53)
343 PRK10941 hypothetical protein; 86.2 5.4 0.00012 34.9 8.4 63 345-407 183-245 (269)
344 COG4785 NlpI Lipoprotein NlpI, 85.3 21 0.00044 29.9 14.1 157 209-373 99-267 (297)
345 PF06552 TOM20_plant: Plant sp 85.2 3.2 7E-05 33.3 5.9 33 359-391 51-83 (186)
346 KOG0403 Neoplastic transformat 85.1 33 0.00072 32.0 18.7 103 345-455 511-617 (645)
347 PRK13800 putative oxidoreducta 85.0 57 0.0012 34.7 26.1 257 40-319 633-892 (897)
348 KOG0545 Aryl-hydrocarbon recep 84.4 7.6 0.00016 32.9 7.9 61 347-407 234-294 (329)
349 PF14561 TPR_20: Tetratricopep 84.3 3.2 7E-05 29.2 5.1 45 363-407 8-52 (90)
350 PF14432 DYW_deaminase: DYW fa 84.3 1.3 2.8E-05 33.0 3.3 36 413-460 2-37 (116)
351 PF11207 DUF2989: Protein of u 83.8 11 0.00024 31.1 8.5 73 155-228 122-197 (203)
352 KOG4642 Chaperone-dependent E3 83.8 3.7 8E-05 34.5 5.9 84 285-371 20-106 (284)
353 COG4455 ImpE Protein of avirul 83.6 8.9 0.00019 31.9 7.8 77 8-86 3-81 (273)
354 COG4455 ImpE Protein of avirul 83.6 5.7 0.00012 33.0 6.8 64 314-377 4-69 (273)
355 COG2976 Uncharacterized protei 83.2 24 0.00052 28.9 13.7 87 116-204 97-189 (207)
356 PF09986 DUF2225: Uncharacteri 82.8 10 0.00022 31.9 8.4 66 344-409 119-197 (214)
357 KOG4570 Uncharacterized conser 82.6 9.5 0.00021 33.6 8.1 96 108-204 64-165 (418)
358 PF04910 Tcf25: Transcriptiona 82.3 42 0.0009 31.1 14.0 136 252-405 22-167 (360)
359 KOG1308 Hsp70-interacting prot 82.3 1.2 2.5E-05 39.5 2.7 88 323-410 126-215 (377)
360 COG1747 Uncharacterized N-term 82.1 48 0.001 31.7 21.7 170 210-386 67-248 (711)
361 smart00028 TPR Tetratricopepti 82.1 2.6 5.6E-05 21.8 3.4 27 344-370 2-28 (34)
362 PRK11619 lytic murein transgly 81.2 65 0.0014 32.6 34.3 224 187-411 254-510 (644)
363 PF07163 Pex26: Pex26 protein; 80.9 25 0.00055 30.6 9.9 85 146-232 90-181 (309)
364 PRK15180 Vi polysaccharide bio 80.9 17 0.00037 34.1 9.5 121 251-375 300-423 (831)
365 PRK12798 chemotaxis protein; R 80.3 50 0.0011 30.7 20.0 150 222-373 125-287 (421)
366 smart00386 HAT HAT (Half-A-TPR 80.1 4.1 8.8E-05 21.5 3.7 30 357-386 1-30 (33)
367 TIGR03504 FimV_Cterm FimV C-te 79.5 5.8 0.00013 23.4 4.2 24 246-269 5-28 (44)
368 KOG1550 Extracellular protein 79.5 69 0.0015 31.8 16.6 49 358-408 379-428 (552)
369 KOG0403 Neoplastic transformat 79.4 56 0.0012 30.7 17.2 56 279-336 513-568 (645)
370 TIGR02508 type_III_yscG type I 79.2 21 0.00045 25.6 9.1 61 216-279 46-106 (115)
371 PRK13342 recombination factor 77.8 65 0.0014 30.6 14.4 116 58-188 153-279 (413)
372 TIGR02561 HrpB1_HrpK type III 77.7 31 0.00068 26.9 11.6 51 55-106 23-73 (153)
373 PF10579 Rapsyn_N: Rapsyn N-te 77.6 6.4 0.00014 26.6 4.4 45 355-399 18-65 (80)
374 KOG1586 Protein required for f 77.3 44 0.00096 28.4 16.6 19 357-375 209-227 (288)
375 COG1747 Uncharacterized N-term 76.8 72 0.0016 30.6 19.2 159 40-204 64-235 (711)
376 cd08819 CARD_MDA5_2 Caspase ac 76.7 22 0.00048 24.7 7.1 65 61-127 21-85 (88)
377 PF12862 Apc5: Anaphase-promot 76.5 12 0.00027 26.5 6.1 54 353-406 8-70 (94)
378 PF06552 TOM20_plant: Plant sp 76.0 39 0.00086 27.3 9.1 45 359-410 96-140 (186)
379 KOG2422 Uncharacterized conser 75.9 66 0.0014 31.3 11.9 54 351-404 350-405 (665)
380 PF10579 Rapsyn_N: Rapsyn N-te 75.8 10 0.00023 25.7 5.0 44 253-296 19-64 (80)
381 COG5159 RPN6 26S proteasome re 74.7 53 0.0011 28.8 10.0 32 246-277 9-40 (421)
382 COG5159 RPN6 26S proteasome re 73.8 62 0.0013 28.4 13.2 132 145-276 9-165 (421)
383 KOG0551 Hsp90 co-chaperone CNS 73.7 17 0.00036 32.5 7.1 91 313-403 83-179 (390)
384 PF07163 Pex26: Pex26 protein; 73.7 48 0.001 29.0 9.5 88 247-337 90-184 (309)
385 PF13929 mRNA_stabil: mRNA sta 73.6 46 0.001 29.3 9.6 98 5-102 163-263 (292)
386 PF10345 Cohesin_load: Cohesin 73.5 1.1E+02 0.0023 31.0 35.1 159 6-166 59-252 (608)
387 PF10345 Cohesin_load: Cohesin 71.6 1.2E+02 0.0026 30.6 28.6 49 287-335 373-428 (608)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 71.2 43 0.00093 25.4 8.3 42 361-402 81-124 (126)
389 PF10366 Vps39_1: Vacuolar sor 69.9 41 0.00089 24.7 8.4 26 243-268 42-67 (108)
390 KOG0376 Serine-threonine phosp 69.4 4.1 9E-05 38.0 2.7 98 281-381 10-110 (476)
391 KOG4507 Uncharacterized conser 69.1 14 0.00031 35.6 6.1 96 288-386 620-719 (886)
392 KOG4077 Cytochrome c oxidase, 69.0 33 0.00072 25.8 6.6 48 336-383 77-124 (149)
393 KOG4077 Cytochrome c oxidase, 68.8 47 0.001 25.0 7.4 59 258-318 67-125 (149)
394 PF09477 Type_III_YscG: Bacter 68.6 43 0.00093 24.4 9.5 51 117-169 49-99 (116)
395 cd08819 CARD_MDA5_2 Caspase ac 68.6 37 0.0008 23.6 7.0 38 221-259 48-85 (88)
396 PF14863 Alkyl_sulf_dimr: Alky 66.9 39 0.00084 26.2 7.2 63 327-392 57-119 (141)
397 PF09670 Cas_Cas02710: CRISPR- 66.7 1.1E+02 0.0024 28.5 12.3 52 251-303 142-197 (379)
398 PF04190 DUF410: Protein of un 66.6 90 0.0019 27.3 18.6 83 207-304 88-170 (260)
399 PF13762 MNE1: Mitochondrial s 66.0 62 0.0013 25.2 8.1 82 8-90 41-128 (145)
400 PF14669 Asp_Glu_race_2: Putat 65.9 74 0.0016 26.1 14.0 54 180-233 138-205 (233)
401 COG2256 MGS1 ATPase related to 65.4 1.2E+02 0.0026 28.3 12.2 52 137-188 244-298 (436)
402 PRK10941 hypothetical protein; 64.9 41 0.0009 29.5 7.8 65 315-379 185-251 (269)
403 PF13934 ELYS: Nuclear pore co 64.8 89 0.0019 26.7 10.6 97 82-185 81-183 (226)
404 PF11846 DUF3366: Domain of un 64.1 30 0.00066 28.5 6.8 35 340-374 141-175 (193)
405 KOG3824 Huntingtin interacting 63.9 20 0.00044 31.5 5.6 48 354-401 127-174 (472)
406 PF11846 DUF3366: Domain of un 62.8 38 0.00083 27.9 7.1 51 287-337 120-170 (193)
407 COG4976 Predicted methyltransf 60.8 13 0.00029 31.2 3.8 55 353-407 5-59 (287)
408 KOG3364 Membrane protein invol 59.7 49 0.0011 25.4 6.2 72 308-379 29-107 (149)
409 KOG4507 Uncharacterized conser 59.5 48 0.001 32.3 7.5 87 322-408 618-707 (886)
410 KOG2063 Vacuolar assembly/sort 59.4 2.4E+02 0.0051 29.7 19.9 28 141-168 506-533 (877)
411 PF14669 Asp_Glu_race_2: Putat 59.3 1E+02 0.0022 25.4 12.4 23 281-303 138-160 (233)
412 PF10255 Paf67: RNA polymerase 58.6 53 0.0012 30.7 7.7 54 316-369 127-190 (404)
413 PF04190 DUF410: Protein of un 58.4 1.3E+02 0.0028 26.4 15.8 159 221-406 2-170 (260)
414 KOG0686 COP9 signalosome, subu 58.3 1.6E+02 0.0035 27.5 13.9 58 110-167 152-215 (466)
415 PRK13800 putative oxidoreducta 57.9 2.6E+02 0.0057 29.9 29.8 49 309-357 787-835 (897)
416 COG3947 Response regulator con 57.3 1.4E+02 0.003 26.5 14.6 58 314-371 282-341 (361)
417 COG0735 Fur Fe2+/Zn2+ uptake r 56.4 92 0.002 24.3 7.8 63 161-224 8-70 (145)
418 cd00280 TRFH Telomeric Repeat 56.3 96 0.0021 25.3 7.6 40 281-324 117-156 (200)
419 PRK14700 recombination factor 56.1 1.1E+02 0.0023 27.3 8.7 66 140-205 124-197 (300)
420 PF10366 Vps39_1: Vacuolar sor 55.6 80 0.0017 23.2 8.2 27 141-167 41-67 (108)
421 PF14689 SPOB_a: Sensor_kinase 55.1 28 0.0006 22.4 3.9 28 378-405 24-51 (62)
422 PRK10564 maltose regulon perip 55.1 28 0.00061 30.8 5.0 43 137-179 254-297 (303)
423 PF13762 MNE1: Mitochondrial s 54.7 1E+02 0.0022 24.1 9.4 89 79-189 41-130 (145)
424 PF09477 Type_III_YscG: Bacter 54.1 84 0.0018 23.0 10.1 78 56-136 20-97 (116)
425 cd08326 CARD_CASP9 Caspase act 53.7 59 0.0013 22.5 5.6 30 124-153 46-75 (84)
426 PRK10564 maltose regulon perip 53.3 33 0.0007 30.4 5.1 38 242-279 259-296 (303)
427 PF14689 SPOB_a: Sensor_kinase 52.3 27 0.00058 22.5 3.5 30 138-167 22-51 (62)
428 COG5108 RPO41 Mitochondrial DN 51.6 90 0.002 31.0 8.1 85 82-166 33-130 (1117)
429 PF14561 TPR_20: Tetratricopep 51.0 85 0.0018 22.1 8.0 53 342-394 21-75 (90)
430 PF11663 Toxin_YhaV: Toxin wit 50.8 17 0.00037 27.6 2.7 33 149-183 105-137 (140)
431 KOG4279 Serine/threonine prote 50.6 3E+02 0.0064 28.2 11.5 193 192-408 181-397 (1226)
432 PF11817 Foie-gras_1: Foie gra 50.4 80 0.0017 27.4 7.3 54 349-402 184-243 (247)
433 KOG4567 GTPase-activating prot 50.3 1.9E+02 0.0041 25.9 10.0 72 260-337 263-344 (370)
434 PF08967 DUF1884: Domain of un 50.0 21 0.00046 24.2 2.7 26 436-461 7-32 (85)
435 PF10255 Paf67: RNA polymerase 49.2 2.2E+02 0.0047 26.9 10.0 55 213-267 126-191 (404)
436 PF11817 Foie-gras_1: Foie gra 49.1 68 0.0015 27.8 6.6 55 315-369 182-244 (247)
437 KOG0545 Aryl-hydrocarbon recep 48.9 1.5E+02 0.0033 25.5 8.1 92 112-204 182-294 (329)
438 PF07720 TPR_3: Tetratricopept 48.8 47 0.001 18.5 4.8 17 349-365 7-23 (36)
439 COG0790 FOG: TPR repeat, SEL1 48.5 2E+02 0.0042 25.6 20.1 78 329-409 173-269 (292)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 48.3 1.2E+02 0.0026 23.0 8.2 42 157-198 81-123 (126)
441 KOG2300 Uncharacterized conser 48.0 2.6E+02 0.0057 26.9 34.7 387 12-403 13-511 (629)
442 PF11848 DUF3368: Domain of un 47.2 62 0.0014 19.5 5.3 33 251-283 13-45 (48)
443 PF07575 Nucleopor_Nup85: Nup8 46.8 1.4E+02 0.0031 29.7 9.3 35 55-94 310-344 (566)
444 cd08326 CARD_CASP9 Caspase act 45.4 1E+02 0.0022 21.4 6.0 37 221-257 42-78 (84)
445 COG5191 Uncharacterized conser 44.4 52 0.0011 29.2 4.9 78 308-385 104-184 (435)
446 smart00804 TAP_C C-terminal do 44.3 21 0.00046 23.1 2.1 25 19-43 38-62 (63)
447 PF11838 ERAP1_C: ERAP1-like C 44.3 2.4E+02 0.0052 25.4 18.3 109 291-400 146-260 (324)
448 PF09670 Cas_Cas02710: CRISPR- 44.3 2.7E+02 0.0059 26.0 12.0 57 146-203 138-198 (379)
449 COG4259 Uncharacterized protei 44.1 90 0.0019 22.4 5.1 41 362-402 56-97 (121)
450 PF08424 NRDE-2: NRDE-2, neces 44.0 2.5E+02 0.0054 25.5 14.9 152 292-457 3-171 (321)
451 COG4976 Predicted methyltransf 43.5 52 0.0011 27.9 4.6 33 343-375 29-61 (287)
452 COG2912 Uncharacterized conser 43.5 1.1E+02 0.0023 26.8 6.7 59 348-406 186-244 (269)
453 PF03943 TAP_C: TAP C-terminal 43.3 19 0.00042 22.0 1.7 25 19-43 26-50 (51)
454 COG4003 Uncharacterized protei 43.2 28 0.0006 23.6 2.5 32 47-79 36-67 (98)
455 KOG2471 TPR repeat-containing 42.9 3.2E+02 0.0069 26.4 15.7 103 217-322 248-380 (696)
456 PF11663 Toxin_YhaV: Toxin wit 42.8 33 0.00072 26.1 3.1 22 56-77 109-130 (140)
457 PF12968 DUF3856: Domain of Un 42.4 88 0.0019 23.4 5.1 60 344-403 56-126 (144)
458 PRK09857 putative transposase; 40.5 2.6E+02 0.0056 25.0 9.0 64 347-410 210-273 (292)
459 PF12862 Apc5: Anaphase-promot 39.7 1.3E+02 0.0029 21.1 7.5 23 281-303 47-69 (94)
460 PF15297 CKAP2_C: Cytoskeleton 39.7 79 0.0017 28.7 5.5 47 327-373 119-170 (353)
461 COG0735 Fur Fe2+/Zn2+ uptake r 39.4 1.8E+02 0.004 22.7 7.0 19 285-303 30-48 (145)
462 cd08332 CARD_CASP2 Caspase act 38.9 1.1E+02 0.0025 21.4 5.3 25 125-149 51-75 (90)
463 TIGR02270 conserved hypothetic 38.7 3.5E+02 0.0076 25.7 25.4 55 96-150 88-142 (410)
464 PRK09462 fur ferric uptake reg 38.2 1.9E+02 0.0042 22.5 7.9 61 164-225 7-68 (148)
465 KOG2659 LisH motif-containing 37.8 2.6E+02 0.0055 23.8 8.1 98 2-102 22-128 (228)
466 KOG0991 Replication factor C, 37.6 2.7E+02 0.0058 24.0 12.3 133 140-281 131-279 (333)
467 PF11768 DUF3312: Protein of u 37.4 4.1E+02 0.0089 26.1 10.9 25 243-267 411-435 (545)
468 PRK13341 recombination factor 37.4 4.9E+02 0.011 27.0 14.0 58 150-207 269-331 (725)
469 KOG2396 HAT (Half-A-TPR) repea 37.1 4E+02 0.0086 25.9 27.8 98 272-372 456-559 (568)
470 COG5108 RPO41 Mitochondrial DN 37.1 2.3E+02 0.0049 28.5 8.3 47 245-291 33-81 (1117)
471 KOG4567 GTPase-activating prot 36.6 3.2E+02 0.0069 24.6 9.3 87 62-149 263-359 (370)
472 PRK11639 zinc uptake transcrip 36.0 1.6E+02 0.0036 23.7 6.5 60 266-327 17-76 (169)
473 KOG2581 26S proteasome regulat 35.7 3.8E+02 0.0082 25.2 12.8 23 278-300 212-234 (493)
474 PF04762 IKI3: IKI3 family; I 35.2 6E+02 0.013 27.4 15.3 27 212-238 815-843 (928)
475 KOG1839 Uncharacterized protei 34.8 5.1E+02 0.011 28.5 11.0 155 248-402 940-1124(1236)
476 KOG4814 Uncharacterized conser 34.4 3.2E+02 0.0068 27.4 8.8 85 322-406 365-457 (872)
477 KOG0292 Vesicle coat complex C 34.3 43 0.00093 34.3 3.3 73 285-370 653-725 (1202)
478 PRK14962 DNA polymerase III su 34.0 4.5E+02 0.0098 25.6 11.3 23 152-174 256-278 (472)
479 PF04910 Tcf25: Transcriptiona 33.8 3.9E+02 0.0085 24.8 15.6 56 146-201 110-166 (360)
480 COG5191 Uncharacterized conser 33.8 1.1E+02 0.0024 27.3 5.3 68 339-406 103-171 (435)
481 KOG1839 Uncharacterized protei 33.5 3.2E+02 0.007 29.9 9.4 121 284-405 941-1085(1236)
482 PF09868 DUF2095: Uncharacteri 33.5 1.6E+02 0.0034 21.8 5.1 38 47-85 66-103 (128)
483 PF12926 MOZART2: Mitotic-spin 33.5 1.7E+02 0.0036 20.4 7.1 42 63-104 29-70 (88)
484 PF10516 SHNi-TPR: SHNi-TPR; 33.5 96 0.0021 17.6 3.9 28 378-405 2-29 (38)
485 PF09454 Vps23_core: Vps23 cor 32.9 58 0.0013 21.2 2.8 49 40-89 6-54 (65)
486 PHA02875 ankyrin repeat protei 32.9 4.3E+02 0.0092 24.9 16.6 51 47-101 37-89 (413)
487 KOG1463 26S proteasome regulat 32.7 3.9E+02 0.0085 24.5 9.7 124 282-405 11-156 (411)
488 KOG0128 RNA-binding protein SA 32.6 5.9E+02 0.013 26.5 26.8 99 3-105 110-218 (881)
489 PF13934 ELYS: Nuclear pore co 32.3 3.2E+02 0.0069 23.3 13.0 20 281-300 114-133 (226)
490 PF00356 LacI: Bacterial regul 31.9 41 0.00089 20.1 1.8 15 444-458 32-46 (46)
491 KOG0376 Serine-threonine phosp 31.8 1.2E+02 0.0027 28.8 5.6 55 147-203 12-67 (476)
492 KOG1498 26S proteasome regulat 31.8 4.3E+02 0.0094 24.7 17.9 113 315-427 135-262 (439)
493 cd07153 Fur_like Ferric uptake 31.7 1.3E+02 0.0027 22.2 5.0 45 246-290 6-50 (116)
494 PF04097 Nic96: Nup93/Nic96; 31.5 5.7E+02 0.012 25.9 20.4 27 276-302 325-354 (613)
495 PF12583 TPPII_N: Tripeptidyl 31.3 2.3E+02 0.005 21.6 5.8 38 353-390 86-123 (139)
496 KOG1308 Hsp70-interacting prot 30.8 38 0.00083 30.5 2.2 89 119-209 125-217 (377)
497 KOG2034 Vacuolar sorting prote 30.7 6.5E+02 0.014 26.4 21.7 298 85-404 366-688 (911)
498 PF10475 DUF2450: Protein of u 30.5 4E+02 0.0086 23.8 10.9 22 246-267 133-154 (291)
499 PF07064 RIC1: RIC1; InterPro 30.3 3.8E+02 0.0082 23.5 15.0 60 144-203 184-249 (258)
500 PF04762 IKI3: IKI3 family; I 29.6 7.3E+02 0.016 26.8 11.5 27 177-203 815-843 (928)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-73 Score=566.49 Aligned_cols=453 Identities=30% Similarity=0.513 Sum_probs=423.1
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.||+.+||.|+.+|++.|++++|.++|++|. . ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 229 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-E----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-C----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH
Confidence 4677777777777777777777777777775 2 6777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC----CCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (468)
++.+|++.|+.+.+.+++..+. .+|..+|++|+.+|++.|++++|.++|+.|..+|+.+||.|+.+|++.|++++|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 7777777777777777766554 368889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++|+.+|++.|++++|.++|++|.++
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred HHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+..|++..+|..|+++|++.|++++|.+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcc
Q 012234 399 VREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460 (468)
Q Consensus 399 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~ 460 (468)
++++|++.|+.+.|+++|+++.+.+|.|..++..||...+|+..+.++...|++.||+||++
T Consensus 550 v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 550 VVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999965
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-72 Score=573.18 Aligned_cols=457 Identities=37% Similarity=0.711 Sum_probs=429.5
Q ss_pred CCCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 1 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
||.||+.+||++|.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 789999999999999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhC--------------------------
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-------------------------- 134 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------------------------- 134 (468)
|.++.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|++++|+++|++|
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 999999999999999999999999888888888888888887777766666655
Q ss_pred --------------------------------------------CCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 135 --------------------------------------------KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 135 --------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
.++|..+||.+|.+|.+.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 334445566666666666666666666777764 58
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 250 (468)
.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.+ .+|..+|+.+|.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 330 (468)
++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
.+++++|+.+||..+|++|+.+|..+|+.+.++.+.+++.+++|+++..|..|.+.|++.|+|++|.++.+.|++.|+++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcc
Q 012234 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460 (468)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~ 460 (468)
.||+||+++.+.+|.|..++..||...+|+..++++...|++.||+||++
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999965
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-61 Score=481.30 Aligned_cols=444 Identities=14% Similarity=0.167 Sum_probs=215.2
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHH
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
+.||..+||.||.+|++.|++++|.++|+.|. +.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+
T Consensus 433 ~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34444555555555555555555555555554 44444555555555555555555555555555555444444555555
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhcCCHHHHHHHHhhCC------CCCHhHHHHHHHHHHh
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMK------RPGLSTWNAVISGLVQ 151 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~ 151 (468)
.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++|+.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 555555555555555555544432 344445555555555555555555554442 2444455555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555544444555555555555555555555555555555555455545555555555555555555555
Q ss_pred HhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC
Q 012234 232 FDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307 (468)
Q Consensus 232 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (468)
|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CC
Confidence 544442 3344455555555555555555555555544444455555555555555555555555555544433 44
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH----c-------------------CChHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASI----S-------------------GDVEL 361 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~----~-------------------g~~~~ 361 (468)
.||..+|+.++.+|++.|++++|.+++.+| +..||..+|+.++..|.+ . +..+.
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 455555555555555555555555554444 244444444444433221 0 01233
Q ss_pred HHHHHHHHHhhC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHH
Q 012234 362 GKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440 (468)
Q Consensus 362 a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (468)
|..+|++|.+.+ .|+..+|..++.++.+.+....+..+++.|...+..+....+. ..++.+ . +..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~----~Li~g~----~------~~~ 896 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLS----TLVDGF----G------EYD 896 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhH----HHHHhh----c------cCh
Confidence 444444444443 3344444444444444444444444444443333322211111 111111 1 112
Q ss_pred HHHHHHHHHHHHcCCcCCcch
Q 012234 441 LILERLLGLMREEGYVLLDEV 461 (468)
Q Consensus 441 ~~~~~~~~~~~~~g~~p~~~~ 461 (468)
.++..+++.|...|+.|+..+
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCccc
Confidence 345689999999999999874
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-61 Score=492.44 Aligned_cols=408 Identities=28% Similarity=0.462 Sum_probs=379.1
Q ss_pred CCCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 1 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
||+||+.+||++|.+|++.|++++|+++|++|. ..|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 789999999999999999999999999999999 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhc---------------------------------------
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH--------------------------------------- 121 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--------------------------------------- 121 (468)
|.++.+|++.|+++.|.++|++|.++|..+||++|.+|++.
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999988877666666666665554
Q ss_pred -------------------------------CCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 122 -------------------------------GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 122 -------------------------------~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
|++++|.++|++|..||..+||.+|.+|.+.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4555566666666667888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 250 (468)
.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 330 (468)
++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..+++.|+++|++.|++++|
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHH
Confidence 999999999999999986 59999999999999999999999999999999977 9999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHH-hCCC
Q 012234 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQMK-ESGL 408 (468)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 408 (468)
.++|+++ .||..+|++++.+|+++|+.++|.++|++|.+.+ .||..+|..++.+|.+.|++++|.++|+.|. +.|+
T Consensus 544 ~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 544 WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9999998 8999999999999999999999999999999875 5688999999999999999999999999999 6888
Q ss_pred CCCCc
Q 012234 409 AKIPG 413 (468)
Q Consensus 409 ~~~~~ 413 (468)
.|+..
T Consensus 622 ~P~~~ 626 (857)
T PLN03077 622 TPNLK 626 (857)
T ss_pred CCchH
Confidence 87654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-61 Score=483.66 Aligned_cols=452 Identities=19% Similarity=0.265 Sum_probs=407.2
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCC-CCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
+.++...|..++..+++.|++++|+++|++|. ..+ ++++..+++.++.+|.+.|..+.|..+++.|.. ||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~-~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDME-KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 35778889999999999999999999999999 555 567888889999999999999999999998854 899999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHhHHHHHHHHHHhC
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAVISGLVQN 152 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 152 (468)
+.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999975 7899999999999999999999999999984 8999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012234 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQR 230 (468)
Q Consensus 153 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 230 (468)
|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.. .++.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHhhccCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 231 VFDRFKGR----SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 231 ~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
+|+.|.+. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G 679 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-G 679 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999864 558999999999999999999999999999999999999999999999999999999999999977 9
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHH
Q 012234 307 IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENTGNYII 382 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 382 (468)
+.|+..+|+.|+.+|++.|++++|.++|++| +..||..+|+.|+.+|++.|++++|.++|++|.+.+ .+|..+|..
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999998 378999999999999999999999999999998875 678899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEEC-------------CEEEEEEeCCCCCCCh-HHHHHHHHHHHH
Q 012234 383 MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS-------------GGLQSFVAKDTSGDKS-EQIYLILERLLG 448 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 448 (468)
++.+|.+.|++++|.+++++|++.|+.|+.......+. .....|- ..++.. ..-...+..+++
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~---~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD---SGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---ccccccccchHHHHHHHHH
Confidence 99999999999999999999999999987643322110 0111111 001110 011234668999
Q ss_pred HHHHcCCcCCcchh
Q 012234 449 LMREEGYVLLDEVE 462 (468)
Q Consensus 449 ~~~~~g~~p~~~~~ 462 (468)
.|++.|++||..+.
T Consensus 837 eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 837 ETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHCCCCCCHHHH
Confidence 99999999997664
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-56 Score=440.49 Aligned_cols=392 Identities=20% Similarity=0.254 Sum_probs=363.1
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
+++..+|+.+|.++.+.|++++|+++|+.|....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34566999999999999999999999999984455789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHhHHHHHHHHHHhCCChHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a 158 (468)
++.+|++.|+++.|.++|++|.+||..+|++++.+|++.|++++|.++|++|.+ |+..+|+.++.++.+.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999964 8889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc--
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-- 236 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 236 (468)
.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|+.++|.++|++|.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999885 4688999999999999999999999999985
Q ss_pred --CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 237 --GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 237 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
.+|..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeH
Confidence 478889999999999999999999999999999999999999999999999999999999999986 4788999
Q ss_pred HHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHH
Q 012234 315 ACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI--EPENTGNYIIMANLYSQ 389 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 389 (468)
+.|+.+|++.|+.++|.++|++| +..||..||+.++.+|.+.|++++|.++|+.|.+. ..++..+|..++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 99999999999999999999998 48899999999999999999999999999999864 25577899999999999
Q ss_pred cCChHHHHHHHHHH
Q 012234 390 AGRWDEADRVREQM 403 (468)
Q Consensus 390 ~g~~~~A~~~~~~m 403 (468)
.|++++|.+++++|
T Consensus 475 ~G~~~eA~~~~~~~ 488 (697)
T PLN03081 475 EGLLDEAYAMIRRA 488 (697)
T ss_pred cCCHHHHHHHHHHC
Confidence 99999999998765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=9e-28 Score=249.82 Aligned_cols=395 Identities=13% Similarity=0.092 Sum_probs=326.5
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
++..+|+.+...+...|++++|.+.|+++. ... +.+...+..+...+...|++++|.+.++.+.+.++ .+..++..+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKAL-SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHH-hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 466789999999999999999999999998 432 44566777888889999999999999999988764 377888889
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEA 157 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 157 (468)
...+.+.|+.++|...|+++.+. +...+..++..+...|++++|..+++.+.+ .+...|..+..++...|++++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988642 456778888999999999999999988864 456788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (468)
|+..++++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988763 4456677888888999999999999999888764 45567788888899999999999999988875
Q ss_pred C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 238 R---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 238 ~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
. +...+..+...+...|++++|...|+++...+ |+..++..+..++...|++++|...++++.+. .+.+...+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~ 773 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLR 773 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 3 44567778888888999999999998888763 45566777888888889999999888888763 34567788
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
..+...|...|++++|.+.|+++. .++++.+++.+...+...|+ .+|+..++++.+..|+++..+..++.+|...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 888888888899999998888873 34567788888888888888 778888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCC
Q 012234 393 WDEADRVREQMKESGL 408 (468)
Q Consensus 393 ~~~A~~~~~~m~~~~~ 408 (468)
+++|.++++++.+.+.
T Consensus 853 ~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 853 ADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 8888888888887664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.3e-27 Score=248.57 Aligned_cols=392 Identities=11% Similarity=0.012 Sum_probs=338.9
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...+..++..+.+.|++++|+++++.+. .. .+++..++..+...+...|++++|.+.|+++.+..+ .+...+..+..
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 507 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLE-KK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLAR 507 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH-Hh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHH
Confidence 4556778889999999999999999998 33 356778899999999999999999999999988764 36667788899
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHH
Q 012234 86 MYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 159 (468)
.+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...|+++.. .+...+..++..+...|++++|.
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998865 3566888899999999999999999998854 44567888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-- 237 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 237 (468)
.+++.+.... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999998753 5677788999999999999999999999998865 45667788899999999999999999998765
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHH
Q 012234 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316 (468)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 316 (468)
.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 741 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIK 741 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHH
Confidence 345688889999999999999999999998874 456777888889999999999999999998854 566677888
Q ss_pred HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChH
Q 012234 317 MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (468)
+...+.+.|++++|.+.++++. .+.+...+..+...|...|+.++|.+.|+++.+..|+++.++..++.++...|+ .
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 8999999999999999998872 455688889999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhCC
Q 012234 395 EADRVREQMKESG 407 (468)
Q Consensus 395 ~A~~~~~~m~~~~ 407 (468)
+|+.+++++.+..
T Consensus 821 ~A~~~~~~~~~~~ 833 (899)
T TIGR02917 821 RALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHhhC
Confidence 8999999988753
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-23 Score=187.65 Aligned_cols=378 Identities=13% Similarity=0.160 Sum_probs=323.2
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchH-HHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLW-ICNALI 84 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 84 (468)
..+|..+...+-..|++++|+.+++.+. +.. +-....|..+..++...|+.+.|.+.|.+.++.+ |+.. ....+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~ai-el~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAI-ELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHH-hcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 3578889999999999999999999998 532 3457789999999999999999999999998865 4433 334455
Q ss_pred HHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCChHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL---STWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a 158 (468)
..+-..|++++|...|.+..+ | -...|+.|.-.+-.+|+...|+..|++..+.|+ ..|-.|...|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 566678999999999988765 3 367899999999999999999999999987443 4788999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012234 159 LDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (468)
+..|.+.... .|+ ...+..+...|...|.++.|...|++.++.. +.-+..|+.|..++-..|+..+|.+.|.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998775 555 4567777788899999999999999999875 33467899999999999999999999998775
Q ss_pred ---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-Hh
Q 012234 238 ---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VE 312 (468)
Q Consensus 238 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 312 (468)
....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++.. .+.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 3446889999999999999999999999877 4555 4578889999999999999999999998 67886 57
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 313 HYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
.|+.+...|...|+.+.|+..+.+. .+.|. ...++.|...|...|++.+|+..++.++++.|+.+.+|..++.++.-.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8999999999999999999999887 46675 678899999999999999999999999999999999999999887766
Q ss_pred CChHH
Q 012234 391 GRWDE 395 (468)
Q Consensus 391 g~~~~ 395 (468)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 66554
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.8e-21 Score=190.21 Aligned_cols=390 Identities=13% Similarity=0.042 Sum_probs=292.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012234 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 88 (468)
+......+.+.|++++|+..|++.. . +.|+...|..+..++...|++++|+..++..++..+. +...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al-~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-E--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 5567778889999999999999998 5 3578888999999999999999999999999987643 6778888999999
Q ss_pred hCCCHHHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------------------------
Q 012234 89 KCGSLDYARALLDEMSDKD---EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG------------------------- 138 (468)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~------------------------- 138 (468)
..|++++|+..|......+ ......++..+........+...++.-.. +.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998776543211 11111111111111111222222221111 00
Q ss_pred --H---hHHHHHHHH---HHhCCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCc
Q 012234 139 --L---STWNAVISG---LVQNNRHEAVLDLVREMQASG-VRP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208 (468)
Q Consensus 139 --~---~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 208 (468)
. ..+..+... ....+++++|++.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0 001111111 122468999999999998764 233 34567778888899999999999999999864 334
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (468)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 56778888999999999999999998765 345788999999999999999999999998863 33567777888899
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHc
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSA-K-------VWGALLYGASIS 356 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~ 356 (468)
.+.|++++|+..|++..+. .+.+...++.+...+...|++++|++.|++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999863 2445788899999999999999999999986 333321 1 112222233446
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|.+.++++.+.+|++..++..++.++.+.|++++|++.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2e-20 Score=195.90 Aligned_cols=386 Identities=11% Similarity=0.023 Sum_probs=260.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch-HHH-----------
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL-WIC----------- 80 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----------- 80 (468)
...+...|++++|+..|++.. ... +.+...+..+..++.+.|++++|...|++.++..+.... ..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL-~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAV-RAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 344555666666666666665 321 234555555666666666666666666666554432111 111
Q ss_pred -HHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhH------------
Q 012234 81 -NALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LST------------ 141 (468)
Q Consensus 81 -~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~------------ 141 (468)
......+.+.|++++|+..|++..+. +...+..+...+...|++++|++.|++..+ |+ ...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 11233445566666666666655432 333455555566666666666666655543 21 112
Q ss_pred ------------------------------HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 012234 142 ------------------------------WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 142 ------------------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 191 (468)
+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2233445667788888888888887753 224456667778888888888
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC----c---------chHHHHHHHHHHcCChHH
Q 012234 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS----L---------IIWTAIISAYAAHGDASK 258 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~ 258 (468)
+|...++.+.+.. +.+...+..+...+...++.++|+..++.+.... . ..+..+...+...|++++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 8888888887654 3344444445556677888888888888775421 1 112234567788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
|..+++. .+++...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|++.++.+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9988872 2445667778889999999999999999999864 23467888999999999999999999999874
Q ss_pred -CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHh-CCCC
Q 012234 339 -VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT------GNYIIMANLYSQAGRWDEADRVREQMKE-SGLA 409 (468)
Q Consensus 339 -~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 409 (468)
..| +...+..+..++...|++++|.+.++++....|+++ .++..++..+...|++++|+..+++... .|+.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 344 466777888899999999999999999998866544 3566779999999999999999988854 3443
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.6e-21 Score=182.54 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=192.5
Q ss_pred HHHhCCCHHHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------HhHHHHHHHHHHhCCCh
Q 012234 86 MYAKCGSLDYARALLDEMSDKD---EVSYSAIISGYMVHGFVEKAMDLFQVMKR-PG------LSTWNAVISGLVQNNRH 155 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~ 155 (468)
.+...|++++|...|+++.+.+ ..++..+...+...|++++|..+++.+.. ++ ...+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4455666666666666665422 22444455555555555555555554433 11 12344444555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012234 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (468)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555554431 22333444444444444444444444444443321110000
Q ss_pred cCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC--HhH
Q 012234 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS--VEH 313 (468)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~ 313 (468)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++++++... .|+ ..+
T Consensus 179 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~ 251 (389)
T PRK11788 179 ---IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEV 251 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHH
Confidence 00124456667788889999999998887753 234557777888899999999999999998854 343 456
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH---
Q 012234 314 YACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ--- 389 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 389 (468)
+..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|...++++.+..|++. .+..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccC
Confidence 788889999999999999999887 3567777778889999999999999999999999988765 55555555553
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcee
Q 012234 390 AGRWDEADRVREQMKESGLAKIPGRS 415 (468)
Q Consensus 390 ~g~~~~A~~~~~~m~~~~~~~~~~~~ 415 (468)
.|+.+++..++++|.++++.++|...
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56999999999999999999888743
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.7e-20 Score=196.46 Aligned_cols=389 Identities=11% Similarity=0.055 Sum_probs=260.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
.+...+..+-.......|...+..+. .....|+.. .......+...|++++|...|++.++..+. +...+..+..++
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~-~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~ 313 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQ-KQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHH-HhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45555665555556778888888775 322123322 123455677899999999999999998643 788899999999
Q ss_pred HhCCCHHHHHHHHhhcCC--CCe---ehHH------------HHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHH
Q 012234 88 AKCGSLDYARALLDEMSD--KDE---VSYS------------AIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVIS 147 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 147 (468)
.+.|++++|+..|++..+ |+. ..|. .....+.+.|++++|+..|+++.+ .+...+..+..
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999998875 321 1121 224567899999999999999875 34567888899
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------------------------------H
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF------------------------------------------S 185 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~------------------------------------------~ 185 (468)
.+...|++++|++.|++..+.. +.+...+..+...+ .
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999999998753 22333443343333 2
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
..|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+ .++..+..+...+...+++++|+..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3455555555555555443 22333444455555555555555555555432 1222333333334445555555555
Q ss_pred HHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 012234 263 FNEMLNNGIQPDPV---------TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333 (468)
Q Consensus 263 ~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 333 (468)
++.+......++.. .+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|++.
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 54432211111111 112234455666777777766651 134555667788888899999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 334 VSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 334 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|+++. ..| +...+..++..+...|++++|+..++++.+..|+++.++..++.++...|++++|.++++++....
T Consensus 626 y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 626 YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88873 344 577888888899999999999999998888888888888889999999999999999999887754
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.6e-22 Score=177.61 Aligned_cols=389 Identities=13% Similarity=0.115 Sum_probs=315.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCC--------------------------------CCCCcchHHHHHHHhhccCC
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPV--------------------------------LRPDGVTVVSVLQACGQSSD 57 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------------------------~~~~~~~~~~l~~~~~~~~~ 57 (468)
..|..-.-+.|++++|++.-...-++.. .+.-..+|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 4455666777888888876554432211 11224567777777778888
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeeh---HHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 58 IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS---YSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
+++|+..++.+++..+. ....|..+..++...|+.+.|.+.|.+..+-++.. .+.+...+-..|++++|...+.+.
T Consensus 132 ~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 88888888888887643 67778888888888888888888888777644432 233445555678888888888776
Q ss_pred CC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchh
Q 012234 135 KR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210 (468)
Q Consensus 135 ~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 210 (468)
.+ |.- ..|+.|...+-.+|+...|+..|++.... .|+ ...|..|...|...+.++.|...|..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 64 432 46888889999999999999999998875 454 3578889999999999999999998888764 34456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACA 286 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 286 (468)
++..+...|-..|.++.|+..|++..+.++ .+|+.|..++-..|++.+|...+.+.... .|+ ....+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 677788889999999999999999876433 68999999999999999999999998875 444 567888999999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~ 363 (468)
..|.++.|..+|....+ +.|. ...++.|...|...|++++|+..|++. +++|+ ...++.+...|-..|+...|+
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999999884 4564 567899999999999999999999987 58887 679999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+.+.++...+|.-..++..|+..|...|+..+|+.-++...+..
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987754
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.9e-21 Score=179.89 Aligned_cols=280 Identities=11% Similarity=0.153 Sum_probs=182.5
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-------eehHHHHHHHHHhcCC
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD-------EVSYSAIISGYMVHGF 123 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~ 123 (468)
.+...|+++.|...|.++.+.++ .+..++..+...+...|++++|..+++.+.... ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34555667777777777766543 245566666667777777777777776655421 1345666666777777
Q ss_pred HHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHH
Q 012234 124 VEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA----VTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 124 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..+.. ..+..+...+...|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777776654 34556777777777777777777777777665422221 1334556666677777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
++++.+.. +.+...+..+...+.+.|++++|..+|+++.+.++ .+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776654 33345566667777777777777777777664222 34566777777777777777777777664 4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc---cCChHHHHHHHHhC
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR---ARRISEATEFVSKM 337 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 337 (468)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 55555566777777777777777777777643 5776677766666553 44677777777665
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.7e-19 Score=177.00 Aligned_cols=373 Identities=12% Similarity=0.049 Sum_probs=281.8
Q ss_pred HhcCCChhHHHHHHHHhhhCCC-CCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 012234 16 YSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94 (468)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (468)
+.++.+|+.---.|.....+.. -..+......++..+.+.|+++.|..+++..+...+. +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 4456666665555544431110 0123344666777888999999999999999888765 4555556667778899999
Q ss_pred HHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 95 YARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 95 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
.|...|+++.+ | +...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+...
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999875 3 456788888999999999999999998875 3 4567888899999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHH
Q 012234 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTA 245 (468)
Q Consensus 169 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 245 (468)
.. .+...+.. +..+...|++++|...++.+.+....++......+...+...|++++|...+++.... +...+..
T Consensus 174 ~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 32 22223323 3347888999999999999887654444445555677888999999999999987753 4567788
Q ss_pred HHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHH
Q 012234 246 IISAYAAHGDASK----AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGV 320 (468)
Q Consensus 246 l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 320 (468)
+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++++... .| +...+..+...
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 8899999999986 799999988752 335678888899999999999999999998854 44 45677778899
Q ss_pred HhccCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 321 LSRARRISEATEFVSKMP-VKPSAK-VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
+.+.|++++|+..++++. ..|+.. .+..+..++...|+.++|...|+++.+..|.+. ..++++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 999999999999998873 456543 344456778899999999999999999988764 234456666
Q ss_pred HHHHHHhCC
Q 012234 399 VREQMKESG 407 (468)
Q Consensus 399 ~~~~m~~~~ 407 (468)
.+.+..+.-
T Consensus 396 ~~~~~~~~~ 404 (656)
T PRK15174 396 ALDGQISAV 404 (656)
T ss_pred HHHHHHHhc
Confidence 666665543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.2e-18 Score=174.69 Aligned_cols=391 Identities=10% Similarity=0.015 Sum_probs=298.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
.-.+.+....|+.++|++++.... ... +.+...+..+..++...|++++|..++++.++..+. +...+..++.++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~-~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYR-VHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345666777999999999999997 322 345556889999999999999999999999987533 56677789999999
Q ss_pred CCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHH
Q 012234 90 CGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
.|+.++|+..+++..+ | +.. +..+...+...|+.++|+..++++.+ | +...+..+...+...|..++|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999875 3 455 88888899999999999999999876 4 44566778888889999999999998
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHH-----ccCCh---hhHHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhcC
Q 012234 164 EMQASGVRPNA------VTISSIFSLFS-----HFSNL---KGGKEIHGYAVKN-RYDRNIY-VAT----AIIDTYAKTG 223 (468)
Q Consensus 164 ~m~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g 223 (468)
.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+. ..+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6653 3332 01112222221 11233 6788888888864 2233221 111 1133456779
Q ss_pred ChHHHHHHHhhccCCC---cc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHH
Q 012234 224 FLHGAQRVFDRFKGRS---LI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQP---DPVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 224 ~~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
++++|+..|+.+.+.+ +. ....+..+|...|++++|+.+|+++....... .......+..++...|++++|..
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999988743 21 22335778999999999999999987643111 12445666778899999999999
Q ss_pred HHHHhhhhcC----------CCCC---HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHH
Q 012234 297 IFNAMSGQYG----------IQPS---VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 297 ~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
+++.+..... -.|+ ...+..+...+...|+.++|++.++++. .+.+...+..+...+...|++++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 9999885310 0122 2345567788899999999999999973 34468899999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|++.++++.+..|+++..+..++..+...|++++|..+++++++..
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998753
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=6.2e-19 Score=173.11 Aligned_cols=319 Identities=12% Similarity=0.040 Sum_probs=260.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
-.++..+.++|++++|+.+++... ... +-+...+..++.+....|+++.|...++++.+..+. +...+..+...+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l-~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV-LTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH-HhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345677889999999999999998 432 344556667777778899999999999999998744 67788889999999
Q ss_pred CCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHH
Q 012234 90 CGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
.|++++|...|++... | +...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999999876 3 466888999999999999999999987643 333 334333 45888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH----HHHHHhhccC--
Q 012234 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG----AQRVFDRFKG-- 237 (468)
Q Consensus 164 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~-- 237 (468)
.+......++......+..++...|++++|...+..+.+.. +.+...+..+...|...|++++ |...|++..+
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98876433445555666778899999999999999999875 4567778889999999999986 7999998775
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-hHHH
Q 012234 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-EHYA 315 (468)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 315 (468)
.+..++..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++++... .|+. ..+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~ 356 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNR 356 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHH
Confidence 344688899999999999999999999998863 234566777889999999999999999999854 4554 3344
Q ss_pred HHHHHHhccCChHHHHHHHHhC
Q 012234 316 CMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
.+..++...|+.++|.+.|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4567889999999999999987
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3e-17 Score=164.72 Aligned_cols=368 Identities=10% Similarity=0.025 Sum_probs=282.1
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...+..+...+.+.|++++|+++|++.. ... |.+...+..+...+...|++++|...++++++..+. +.. +..+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~ 124 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKAL-SLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHH
Confidence 4458999999999999999999999988 432 455667778888899999999999999999988543 566 888999
Q ss_pred HHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-CCH------hHHHHHHHHHH-----
Q 012234 86 MYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-PGL------STWNAVISGLV----- 150 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~----- 150 (468)
++...|+.++|+..++++.+ | +...+..+...+...|..++|+..++.... |+. .....++....
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999999999876 3 455667788888899999999999998776 221 11222333332
Q ss_pred hCCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCChhhHHHHHHHHHHcCCC-CchhHHHHHHHHHH
Q 012234 151 QNNRH---EAVLDLVREMQAS-GVRPNAV-TIS----SIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYA 220 (468)
Q Consensus 151 ~~g~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 220 (468)
..+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 22334 7889999998854 2233321 111 1133456779999999999999987632 22 22333677899
Q ss_pred hcCChHHHHHHHhhccCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSL-------IIWTAIISAYAAHGDASKAVSLFNEMLNNGI-----------QPDP---VTFT 279 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~ 279 (468)
..|++++|+..|+++.+.++ .....+..++...|++++|..+++.+..... .|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999999865332 2355566688999999999999999987521 1332 2455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcC
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYGASISG 357 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g 357 (468)
.+...+...|+.++|+..++++... .+.+...+..+...+...|++++|++.+++.. ..|+ ...+..++..+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 6777888999999999999999864 34467888899999999999999999999883 5565 677778888899999
Q ss_pred ChHHHHHHHHHHHhhCCCCcchH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
++++|+.+++++++..|+++.+.
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999987544
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=1.8e-16 Score=159.53 Aligned_cols=392 Identities=13% Similarity=0.069 Sum_probs=268.8
Q ss_pred CCCCcchHHHH-HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc-cCChHHHHHHHHHHHHhCCCCchHH
Q 012234 2 SKRDIVSWNSM-IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGMEVHNFVIESHIKMDLWI 79 (468)
Q Consensus 2 ~~p~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (468)
|+|+..+.... ...|.+.|++++|+++++++. +.+ +.+..-...+..++.. .++ +.+..++.. .+.-+...
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~-k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l 249 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR-QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQS 249 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHH
Confidence 34445544444 889999999999999999998 544 3344445666667766 366 777777543 23357888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC-----CCeehH------------------------------HHHHHHHHhcCCH
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSD-----KDEVSY------------------------------SAIISGYMVHGFV 124 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~------------------------------~~li~~~~~~~~~ 124 (468)
...++..|.+.|+.++|.++++++.. |...+| -.++..+.+.+++
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 88999999999999999999998863 111111 1123444555555
Q ss_pred HHHHHHHhhCCC-------------------------------C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----
Q 012234 125 EKAMDLFQVMKR-------------------------------P-GLSTWNAVISGLVQNNRHEAVLDLVREMQAS---- 168 (468)
Q Consensus 125 ~~A~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---- 168 (468)
+.+.++...-+. | +.....-+.-...+.|+.++|.++|+.....
T Consensus 330 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 330 DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 544444221110 0 0001111111223344444444444443320
Q ss_pred -----------------------------------------------------------CC-CC--CHHHHHHHHHHHHc
Q 012234 169 -----------------------------------------------------------GV-RP--NAVTISSIFSLFSH 186 (468)
Q Consensus 169 -----------------------------------------------------------~~-~p--~~~~~~~l~~~~~~ 186 (468)
+. ++ +...+..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 00 12 33444445544544
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFN 264 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (468)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...++
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66667777676666543 4444444445555689999999999987764 334456677778889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-C
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-S 342 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~ 342 (468)
+..+.. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|+..+++.. ..| +
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 988764 223333334444555669999999999999843 6788889999999999999999999999883 455 5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...++.+..++...|++++|+..++++.+..|+++.++..++.++...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77888899999999999999999999999999999999999999999999999999999998754
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=6e-17 Score=159.67 Aligned_cols=365 Identities=11% Similarity=-0.004 Sum_probs=268.2
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.|+...|..+..+|.+.|++++|++.++... ... +.+...|..+..++...|++++|...+..+...+...+... ..
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al-~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~ 233 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAAL-ELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS-AQ 233 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH-HH
Confidence 4677789999999999999999999999998 533 34566888899999999999999988876655432222211 11
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-----------------------------CC---eehHHHHHHHH---HhcCCHHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSD-----------------------------KD---EVSYSAIISGY---MVHGFVEKA 127 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~---~~~~~~li~~~---~~~~~~~~A 127 (468)
++.-+........+...++.-.. .+ ...+..+...+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 11111111111122222211110 00 01111111111 224678999
Q ss_pred HHHHhhCCC-----C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHH
Q 012234 128 MDLFQVMKR-----P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 128 ~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 200 (468)
.+.|+.... | ....|+.+...+...|++++|+..+++.++. .|+ ...|..+...+...|++++|...++.+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998764 2 3346888888999999999999999999876 444 557888889999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277 (468)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 277 (468)
.+.. +.+..++..+...+...|++++|...|++..+. +...+..+..++.+.|++++|+..|++.... .+.+...
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~ 469 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDV 469 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHH
Confidence 8875 455778888999999999999999999998763 4467778888999999999999999999875 2335778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-h-------HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-E-------HYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWG 347 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~ 347 (468)
++.+...+...|++++|...|++.... .|+. . .++.....+...|++++|.+++++. ...|+ ...+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 888999999999999999999998753 3321 1 1222233344579999999999986 44554 56788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
.+...+...|++++|+..|+++.++.+...
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 899999999999999999999999876533
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.6e-16 Score=154.19 Aligned_cols=387 Identities=12% Similarity=0.037 Sum_probs=280.8
Q ss_pred HHhcCCChhHHHHHHHHhhhCCCCCCCcc-hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 15 GYSQGGFYEECKALFREMLNSPVLRPDGV-TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
...++|+++.|++.|++.. +. .|+.. ....++..+...|+.++|+..+++..... .........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL-~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEES-KA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHH-hh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3467899999999999998 43 35542 22377788888899999999999988221 22333444446788899999
Q ss_pred HHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 94 DYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 94 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
++|+++|+++.+. ++..+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999999863 456677788889999999999999999986 55445544444444466776799999999887
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHH------------------------------------------------HHHH
Q 012234 169 GVRPNAVTISSIFSLFSHFSNLKGGKEI------------------------------------------------HGYA 200 (468)
Q Consensus 169 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------------~~~~ 200 (468)
. +.+...+..+..++.+.|-...|.++ ++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 33444555555555555443333322 2222
Q ss_pred HHc-CCCCc-hhHH----HHHHHHHHhcCChHHHHHHHhhccCCC--c--chHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 201 VKN-RYDRN-IYVA----TAIIDTYAKTGFLHGAQRVFDRFKGRS--L--IIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 201 ~~~-~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
... +..|. ...+ .-.+-++...|++.++++.|+.+.... + .+-..+..+|...+++++|..+++++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 11121 1111 123456677889999999999998543 2 355667889999999999999999986642
Q ss_pred -----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC----------CCCC---HhHHHHHHHHHhccCChHHHHH
Q 012234 271 -----IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG----------IQPS---VEHYACMVGVLSRARRISEATE 332 (468)
Q Consensus 271 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~~~~~~A~~ 332 (468)
..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333456788899999999999999999886311 0122 2234456777889999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 333 FVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 333 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++++. .+-|......+...+...|.+.+|++.++.+....|++..+...++.++...|+|++|..+.+.+...
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999883 45578899999999999999999999999988899999999999999999999999999888777554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=2.9e-15 Score=150.91 Aligned_cols=394 Identities=12% Similarity=0.027 Sum_probs=287.9
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHH------------------------------HHhh
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVL------------------------------QACG 53 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~------------------------------~~~~ 53 (468)
-|+..+..+...|.+.|+.++|.++++++.....-.|...+|...+ ..+.
T Consensus 245 ~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 245 TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999873222224333332222 2222
Q ss_pred ccCChHHHHHH-----------------------------HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 012234 54 QSSDIVFGMEV-----------------------------HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 54 ~~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 104 (468)
+.+.++.+.++ +..|.+.. +-+.....-+.-.....|+.++|.++|+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 325 KEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred hccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 33333333322 22222221 1133344444455667889999999999876
Q ss_pred C-C-C----eehHHHHHHHHHhcCC---HHHHHHH-------------------------HhhCCC---C--CHhHHHHH
Q 012234 105 D-K-D----EVSYSAIISGYMVHGF---VEKAMDL-------------------------FQVMKR---P--GLSTWNAV 145 (468)
Q Consensus 105 ~-~-~----~~~~~~li~~~~~~~~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~l 145 (468)
. + + ...-..++..|.+.+. ..++..+ +..... + +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 6 2 2 2234466777777665 3333333 111111 2 45677888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
..++.. +++++|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..++.+.|+.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCH
Confidence 877776 8999999988888765 577655445556667999999999999987654 34445566778889999999
Q ss_pred HHHHHHHhhccCCCcchHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 226 HGAQRVFDRFKGRSLIIWTAIIS---AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
++|...+++..+.++...+.... .....|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..
T Consensus 559 ~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 559 AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988755544443333 334559999999999999875 5678888999999999999999999999998
Q ss_pred hhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 303 GQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 303 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.. .| +...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.+..|++..+
T Consensus 637 ~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 637 EL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred Hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 53 45 5677888888999999999999999987 3445 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
....+....+..+++.|.+-+++.-....
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999998877655443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.9e-15 Score=147.01 Aligned_cols=352 Identities=12% Similarity=0.081 Sum_probs=274.0
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehH-HHH--HHHHHhcCCHHHH
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSY-SAI--ISGYMVHGFVEKA 127 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~~~~~~A 127 (468)
...+.|+++.|+..|+++++..+.-...++ .++..+...|+.++|+..+++...|+...+ ..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456899999999999999987644222344 788889999999999999999997754443 334 4577888999999
Q ss_pred HHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 128 MDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 128 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
+++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++++.+..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999986 3 4556778888999999999999999999876 5666666555555555667767999999999986
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhccC-----------------------------------------------
Q 012234 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG----------------------------------------------- 237 (468)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------------------------------------- 237 (468)
+.+...+..+..++.+.|-...|.++..+-+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 55566667777777777766666555543221
Q ss_pred ----CCcc---hH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 238 ----RSLI---IW----TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 238 ----~~~~---~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
+++. .| .-.+-++...|++.++++.|+.+...|.+....+-..+.++|...+.+++|+.+++.+....+
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 0110 11 123446778899999999999999888665566888899999999999999999999876422
Q ss_pred ----CCCCHhHHHHHHHHHhccCChHHHHHHHHhCCC--------------CCC---HHHHHHHHHHHHHcCChHHHHHH
Q 012234 307 ----IQPSVEHYACMVGVLSRARRISEATEFVSKMPV--------------KPS---AKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 307 ----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~---~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
..++......|.-+|...+++++|..+++++.. .|+ ......++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122444457889999999999999999998831 122 23445567778899999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++++....|.|+.....+++++...|...+|.+.++.....
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999777654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6e-16 Score=146.71 Aligned_cols=402 Identities=12% Similarity=0.075 Sum_probs=245.9
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCC-CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
-|++.-+.|..-|.-.|+++.+..+...+....... .-+.+|..+.+++-..|++++|...|-+..+....-....+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 345566666666666667666666666665221111 1133466666666666677776666666655442221233344
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcC----CHHHHHHHHhhCCC-------------------
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHG----FVEKAMDLFQVMKR------------------- 136 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~------------------- 136 (468)
+...+.+.|+++.+...|+.+.+. +..+...|...|...+ ..+.|..++.+..+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 566666666666666666665542 2333344444444332 23334444433332
Q ss_pred ----------------------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHH
Q 012234 137 ----------------------PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS---GVRPNA------VTISSIFSLFS 185 (468)
Q Consensus 137 ----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~ 185 (468)
..+...|.+...+...|++++|...|...... ...+|. .+--.+..+..
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 33344555555555556666666665555433 111111 11112333444
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
..++.+.|.+.|..+.+.. +.-+..|..++.+....+...+|...+..+.. .++..+..+...|.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 5555666666666555532 11122233333333334556666666666543 4566677777777777777777776
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 263 FNEMLNN-GIQPDPVTFTAVLSACAH------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 263 ~~~m~~~-~~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
|....+. ...+|..+...|...|.. .+..++|+++|.++.+. -+.|...-+-+.-.++..|++.+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchH
Confidence 6655443 123566766666665543 24467888888888853 34477778888888999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
|..+|.+.. ......+|..+.++|...|++..|+++|+...+.. .+++.+...|++++.+.|++.+|.+.+.....
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999984 23356789999999999999999999999988874 45788899999999999999999998877765
Q ss_pred CCC
Q 012234 406 SGL 408 (468)
Q Consensus 406 ~~~ 408 (468)
...
T Consensus 745 ~~p 747 (1018)
T KOG2002|consen 745 LAP 747 (1018)
T ss_pred hCC
Confidence 443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.9e-15 Score=142.20 Aligned_cols=383 Identities=11% Similarity=0.081 Sum_probs=253.6
Q ss_pred CChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHH
Q 012234 20 GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM--DLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 20 g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
..+..++.++...-... +-|+...+.|...+.-.|++..++.+...+....... -...|--+.++|...|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34667888887776333 3567788888899999999999999999998765221 2344667999999999999999
Q ss_pred HHHhhcCCC--C--eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCC----ChHHHHHHHHHHH
Q 012234 98 ALLDEMSDK--D--EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNN----RHEAVLDLVREMQ 166 (468)
Q Consensus 98 ~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g----~~~~a~~~~~~m~ 166 (468)
.+|-+..+. + ...+.-|.+.+.+.|+++.|...|+.+.+ || ..+...|...|...+ ..+.|..++.+..
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999887753 2 44566788999999999999999999875 44 456777777777665 4567777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH----HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC----
Q 012234 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV----KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---- 238 (468)
Q Consensus 167 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 238 (468)
..- +.|...|..+...+....-+ .+...|..+. ..+-.+.+...|.+...+...|++++|...|......
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 542 44556666665555444333 3355554443 3444566777788888888888888888777765431
Q ss_pred ---Cc------chHHHHHHHHHHcCC----------------------------------hHHHHHHHHHHHHC-CCCCC
Q 012234 239 ---SL------IIWTAIISAYAAHGD----------------------------------ASKAVSLFNEMLNN-GIQPD 274 (468)
Q Consensus 239 ---~~------~~~~~l~~~~~~~g~----------------------------------~~~a~~~~~~m~~~-~~~p~ 274 (468)
+. .+--.+....-..++ ..+|...++..... ...|+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 11 011122222333334 44444444444432 12233
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh------------ccCChHHHHHHHHhC-CCC-
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS------------RARRISEATEFVSKM-PVK- 340 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~-~~~- 340 (468)
..+ .+...+.+...+..|..-|....+.....+|+.+.-.|...|. ..+..++|+++|.++ ...
T Consensus 566 ars--l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 566 ARS--LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred HHH--HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 222 2333455555555555544444443223355555555555443 223567788887766 333
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|...-|.+.-.++..|++..|..+|.++.+...+.+.+|..++.+|...|+|..|+++|+...+.-.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777788888888888999999999888887777788888999999999999999998888776555
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.1e-15 Score=129.68 Aligned_cols=204 Identities=15% Similarity=0.165 Sum_probs=167.6
Q ss_pred HccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHH
Q 012234 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVS 261 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 261 (468)
...|++++|...|++.....-......|+ +.-.+...|++++|++.|-++.. .+..+.-.+...|-...+...|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34688999999999988765443334444 44567788999999999887653 667777788888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC
Q 012234 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK 340 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~ 340 (468)
++.+.... ++.|+..+..|...|-+.|+..+|.+.+-.-.. -++-+..+..-|...|....-+++++.+|++.. +.
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99776654 555688899999999999999999887655442 345578888888999999999999999999984 89
Q ss_pred CCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 341 PSAKVWGALLYGAS-ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 341 ~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
|+..-|..++..|. +.|++++|..+++...+..|.+...+..|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999987765 68999999999999999999999999999999887774
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=3e-17 Score=145.59 Aligned_cols=257 Identities=17% Similarity=0.150 Sum_probs=114.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (468)
.+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4467778889999999998665444323444443 44555667788899999999988876633 56667777777 688
Q ss_pred CChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 223 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
+++++|..++....+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998877644 456677788889999999999999999987642 34567788888899999999999999999
Q ss_pred HhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 300 AMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 300 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
+..+. .| +......++..+...|+.+++.+++.... .+.|+..+..+..++...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99965 56 57788899999999999999888877663 24566778899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 377 TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+.+...+++++...|+.++|.++.++...
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999877643
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.6e-14 Score=124.74 Aligned_cols=183 Identities=10% Similarity=0.046 Sum_probs=148.3
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAI---ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
..|++++|.+.|++....|...-.+| .-.+-..|+.++|+..|-++... +..+...+..+...|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45788999999999888776544333 33567789999999999887653 344667777888889999999999999
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+-+..+ -++.|+.....|...|-+.|+-..|.+.+-+. + .+-+..+..-|..-|....-+++++..|+++.-+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 988774 45557889999999999999999999876544 4 3446777777888888888899999999999989998
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
-......++.++.+.|++.+|..+++...+.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777777888999999999999999988654
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.6e-14 Score=122.64 Aligned_cols=378 Identities=14% Similarity=0.117 Sum_probs=257.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
+.....-|-++|++++|++.|.+.. . ..|+ +..|.....+|...|+|+.+.+-..+.++.++. -+..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI-~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAI-E--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHH-h--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3444566778999999999999998 5 3577 777888888889999999999988888886533 344566667788
Q ss_pred HhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCH------------HHHHHHHhhCCC---CCHhHHHHHHH-----
Q 012234 88 AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV------------EKAMDLFQVMKR---PGLSTWNAVIS----- 147 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~------------~~A~~~~~~~~~---~~~~~~~~l~~----- 147 (468)
-..|++++|+.=. |-.++..++....-. ..+.+-+..-.. |+....++...
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 8888888876321 111111111111111 122222221111 22222221111
Q ss_pred ------------------HHHh--CC---ChHHHHHHHHHHHHC-CCCCC-----------HHHHHHHHHHHHccCChhh
Q 012234 148 ------------------GLVQ--NN---RHEAVLDLVREMQAS-GVRPN-----------AVTISSIFSLFSHFSNLKG 192 (468)
Q Consensus 148 ------------------~~~~--~g---~~~~a~~~~~~m~~~-~~~p~-----------~~~~~~l~~~~~~~~~~~~ 192 (468)
++.. .+ .+..|...+.+-... -..++ ..+......-+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 1111 11 233333333222110 01111 1111111222344688889
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
+..-++..++....++. .|-.+..+|....+.++....|+...+ .|+.+|..-.+.+.-.+++++|..=|++.++.
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999987644433 366677789999999999999988765 56788999999999999999999999999875
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-----
Q 012234 270 GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS----- 342 (468)
Q Consensus 270 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----- 342 (468)
.| +...|..+.-+.-+.+.++++...|++.+++ ++..+.+|+.....+...+++++|.+.|+... ..|.
T Consensus 424 --~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 424 --DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred --ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 44 4566777777777889999999999999974 56678899999999999999999999999762 2332
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 ----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+.+.-.++..-. .+++..|+.+++++.+.+|....+|..|+..-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 223333333333 38999999999999999999999999999999999999999999998755
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.6e-13 Score=129.74 Aligned_cols=328 Identities=16% Similarity=0.162 Sum_probs=221.6
Q ss_pred HHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMK---RPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
....|++++|..++.++... ...+|.+|...|-+.|+.+++...+-... ..|...|..+.....+.|++++|.-
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33347777777777776653 45567777777777777777766554332 2455566667777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHH----HHHHHHHhcCChHHHHHHHhhcc
Q 012234 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~ 236 (468)
.|.+.++.. +++...+---...|.+.|+...|..-+.++.....+.+..-+. ..++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777653 4444444455566777777777777777777665333322222 23455556666677777776655
Q ss_pred C--C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHH
Q 012234 237 G--R---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNG---------------------------IQPDPVTFTAVLSA 284 (468)
Q Consensus 237 ~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~ 284 (468)
. . +...++.++..+.+...++.|......+.... ..++... ..++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 4 1 23456777777777777777777766665521 1222222 122333
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCC--CHhHHHHHHHHHhccCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCh
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQP--SVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDV 359 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 359 (468)
+.+....+....+...+... .+.| +...|.-+..+|...|++.+|+.+|..+.. ..+...|..+..+|...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44444444444455444443 4333 567888999999999999999999999942 23577999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
++|++.|++++...|++..+...|+..|.+.|+.++|.+.+..+..-+-...+.+.|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999999998874333333444443
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.2e-12 Score=115.24 Aligned_cols=418 Identities=13% Similarity=0.138 Sum_probs=309.7
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 96 (468)
..+++++.|..+|+..+ ... ..+...|.-.+..-.++.....|..+++..+..-+..|.. |-..+.+=-..|++..|
T Consensus 84 esq~e~~RARSv~ERAL-dvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERAL-DVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHH-hcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHH
Confidence 44677889999999998 433 4566677777888889999999999999999886665554 44455556678999999
Q ss_pred HHHHhhcC--CCCeehHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CC-
Q 012234 97 RALLDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMK--RPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GV- 170 (468)
Q Consensus 97 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~- 170 (468)
.++|++-. +|+..+|++.|+.-.+...++.|..+++... .|++.+|--....-.+.|+...|..+|....+. |-
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99999866 4899999999999999999999999999876 499999999999999999999999999998764 10
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChHHHHHH--------HhhccCC---
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRV--------FDRFKGR--- 238 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~--- 238 (468)
..+...+.+...--.+...++.|.-+|+.++..-... ....|..+...--+-|+.....+. |+.+.+.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1122233333333346778899999999988764222 134555555544555665444333 2333333
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHH---HHHHHhccCCHHHHHHHHHHhhhhcCCC
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV-------TFTA---VLSACAHSGLVDKAWDIFNAMSGQYGIQ 308 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (468)
|..+|--.+..-...|+.+...++|++.+.. ++|-.. .|.- .+-.-....+.+.+.++++...+ -++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcC
Confidence 4457777777778889999999999999876 555321 1211 11112346889999999999885 334
Q ss_pred CCHhHHHHHHHHH----hccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 309 PSVEHYACMVGVL----SRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 309 p~~~~~~~l~~~~----~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
....||..+--+| .++.++..|.+++... +..|-..++...|..-.+.++++....++++.++-+|.|..+|...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 4556666555444 4778999999999776 6788999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHH
Q 012234 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444 (468)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (468)
+..-...|+++.|..+|.-.+++.....|..-|..+.. |......+.....+|+++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId----FEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYID----FEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh----hhhhcchHHHHHHHHHHHH
Confidence 99999999999999999999887665566666643322 4444444555555555554
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=7.3e-12 Score=114.49 Aligned_cols=407 Identities=12% Similarity=0.090 Sum_probs=252.3
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhh---hCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--chHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM--DLWI 79 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 79 (468)
|...|-+-...=-++|+.+....++++-. +..|+..+...|..=...|-..|..-....+....+..|+.. -..+
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 45566666666667777777777776642 255666666666666666666666666666666666555432 1345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHH----------------------------------HHHHHHhcC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSA----------------------------------IISGYMVHG 122 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------------------------li~~~~~~~ 122 (468)
|+.-...|.+.+.++-|..+|....+- +...|.. ....+-..|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 555566666666666666666555431 2233333 334444445
Q ss_pred CHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 012234 123 FVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199 (468)
Q Consensus 123 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 199 (468)
+...|..++....+ | +...|-+-+.......++++|..+|.+.... .|+...|.--+..-.-.+..++|.++++.
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 55555555544432 2 2234555555555555566666666555442 44444444444444445556666666655
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
.++.- +.-...|..+...+-+.++++.|...|..-.+ ..+..|-.+...--+.|..-.|..++++..-.+ +-+..
T Consensus 677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~ 754 (913)
T KOG0495|consen 677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNAL 754 (913)
T ss_pred HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcch
Confidence 55542 22334455555566666666666665554333 233456666666666666666666666665543 33556
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (468)
.|...|+.-.+.|+.+.|..++.+..+ .++.+...|..-|....+.++-.+....+++- ..|+.+...+...+...
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSE 830 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHH
Confidence 666666666677777777766666664 34445566666666666666655555555555 45666677777888888
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 421 (468)
.+++.|.+-|.++++.+|++..+|..+-..+.+.|.-++-.+++.+.... .|..|..|+.+..
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 89999999999999999999999999999999999999999999888764 4567777875543
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=5.5e-13 Score=123.81 Aligned_cols=283 Identities=10% Similarity=0.009 Sum_probs=188.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCee--hHH--HHHHHHHhcCCHHHHHHH
Q 012234 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYS--AIISGYMVHGFVEKAMDL 130 (468)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~li~~~~~~~~~~~A~~~ 130 (468)
.|+++.|.+.+....+....| ...+.....+..+.|+.+.|...|.++.+.++. ... .....+...|++++|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 689999998777655543222 222333345557899999999999988764322 222 224566777888888877
Q ss_pred HhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 012234 131 FQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 131 ~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (468)
++...+ | +......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 777765 3 4456777777888888888888888888776543222 111100
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
..++..++.......+.+...++++.+.. .++.....+..++...|+.++|..++++..+. +|+.... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh
Confidence 00111222222233344455555555443 45667777788888888888888888888774 4454322 2333
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
....++.+++.+..+...+. .+-|+..+..+...+.+.+++++|.+.|+++ ...|+...+..+...+...|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44568888888888888864 2345666778888888999999999998887 46788888888888889999999999
Q ss_pred HHHHHHHhh
Q 012234 364 FVCDHLFEI 372 (468)
Q Consensus 364 ~~~~~~~~~ 372 (468)
+.+++....
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 998888765
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=7.1e-13 Score=123.10 Aligned_cols=275 Identities=9% Similarity=0.035 Sum_probs=201.1
Q ss_pred cCCHHHHHHHHhhCCCC--CHhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhhHHH
Q 012234 121 HGFVEKAMDLFQVMKRP--GLST-WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS--SIFSLFSHFSNLKGGKE 195 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 195 (468)
.|++++|.+.+....+. ++.. |.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 2233 333344557788888888888888764 55543332 33567778888888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcc-----------hHHHHHHHHHHcCChHHHHHHHH
Q 012234 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-----------IWTAIISAYAAHGDASKAVSLFN 264 (468)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~ 264 (468)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 455677777888888888888888888887753221 23333333344455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-C
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-S 342 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~ 342 (468)
.+-+. .+.+......+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65433 3457778888999999999999999999998853 5555322 233444669999999999877 3344 5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+..+..+...|...|++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778899999999999999999999999999865 5678999999999999999999987754
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.9e-11 Score=106.42 Aligned_cols=395 Identities=14% Similarity=0.104 Sum_probs=208.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHh--hccCChHH-HHHHHHHHHHhC-----------
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC--GQSSDIVF-GMEVHNFVIESH----------- 72 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~--~~~~~~~~-a~~~~~~~~~~~----------- 72 (468)
.+=|.|+.. ..+|..+++.-+|+.|. ..|++.+...-..+++.- -.+.++-- -++.|-.|...|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 345666654 44678889999999998 777666666555554432 22222211 122233332222
Q ss_pred --------CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC----CeehHHHHHHHHHhcCCHHHHHHHHhhCC----C
Q 012234 73 --------IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVHGFVEKAMDLFQVMK----R 136 (468)
Q Consensus 73 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~ 136 (468)
.+.+..++..+|.++++--..+.|.+++++-... +..++|.+|.+-.-.-. .+++.+|. .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 2234556666666666666666666666665432 44556666554332222 33333333 3
Q ss_pred CCHhHHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh-HHHHHHHHHH----cCCCC
Q 012234 137 PGLSTWNAVISGLVQNNRHEA----VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG-GKEIHGYAVK----NRYDR 207 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~ 207 (468)
||..|+|+++++..+.|+++. |++++.+|.+.|+.|.-.+|..+|..+++.++..+ +..++.++.. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 666667776666666666543 45556666666666666666666666666665533 2333333332 11121
Q ss_pred ----chhHHHHHHHHHHhcCChHHHHHHHhhccCC--------C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 208 ----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--------S---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 208 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
+...+...+..|.+..+.+-|..+-.-+... + ..-|..+..+.++....+.-...|+.|.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2334445555555666666555554433321 1 123444555556666666667777776665556
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC-Ch--------HH-----HHHHHH---
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR-RI--------SE-----ATEFVS--- 335 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----A~~~~~--- 335 (468)
|+..+...++++....|.++-.-+++..++.- |-.........+...+++.. +. .. |..+++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777766666666666666655532 32222222222333333322 11 00 111111
Q ss_pred ----hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCcc--hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 336 ----KM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE---PENTG--NYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 336 ----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++ ..+......+..+-.+.+.|..++|.+++....+.. |..+. +...+.+.-.+.+..-.|...++-|..
T Consensus 510 ~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 510 SQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred hhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 123345555666666677777777777777664432 32222 233445555556667777777777765
Q ss_pred CCC
Q 012234 406 SGL 408 (468)
Q Consensus 406 ~~~ 408 (468)
.++
T Consensus 590 ~n~ 592 (625)
T KOG4422|consen 590 FNL 592 (625)
T ss_pred cCc
Confidence 554
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.2e-12 Score=110.38 Aligned_cols=335 Identities=16% Similarity=0.150 Sum_probs=185.9
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
+..+|.++|.++|+--..++|.+++++.. ....+.+..+||.+|.+.+-..+ .++..+|......||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 45678888888888888888888888887 44457888888888877654433 67788888888888888888888
Q ss_pred HHHHhCCCHHHHHHHHh----hcC----CCCeehHHHHHHHHHhcCCHHH-HHHHHhhCCCCCHhHHHHHHHHHHhCCCh
Q 012234 85 GMYAKCGSLDYARALLD----EMS----DKDEVSYSAIISGYMVHGFVEK-AMDLFQVMKRPGLSTWNAVISGLVQNNRH 155 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (468)
.+.++.|+++.|.+.+- +|+ +|+..+|..+|..+++.++..+ |..+..++..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N------------------- 341 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN------------------- 341 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH-------------------
Confidence 88888888777655433 332 2455555555555555554422 2222222210
Q ss_pred HHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCC
Q 012234 156 EAVLDLVREMQASGV---RP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRN---IYVATAIIDTYAKTGF 224 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~ 224 (468)
.+....+ .| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|....
T Consensus 342 --------~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 342 --------SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred --------hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 0000011 11 22334444444444444444444443333211 1111 1223344444455555
Q ss_pred hHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 012234 225 LHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG----------- 289 (468)
Q Consensus 225 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 289 (468)
.+.-...|+.+.. ++..+...++++....|.++-.-+++..++..|..-+......++..+++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 5555555554443 3333444444444444555555555554444442222222222222222211
Q ss_pred ---------CH-HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHH
Q 012234 290 ---------LV-DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-------PVKPSAKVWGALLYG 352 (468)
Q Consensus 290 ---------~~-~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~l~~~ 352 (468)
++ +.....-.++.+. .-.....+...-.+.|.|+.++|.+++.-+ +..|.....--++..
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 11 1111122233322 334456777778889999999999988765 244555555566777
Q ss_pred HHHcCChHHHHHHHHHHHhhCC
Q 012234 353 ASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
.....+...|..+++-+...+-
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcCc
Confidence 7788888999999888876653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.2e-12 Score=111.49 Aligned_cols=328 Identities=14% Similarity=0.064 Sum_probs=243.3
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHh-HHHHHHHHHHh
Q 012234 73 IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS-TWNAVISGLVQ 151 (468)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~ 151 (468)
...|...+-.....+.+.|....|++.|......-+..|.+-+....-..+.+.+..+.......+.. .=-.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 34455555555556667788888888888877665666665555444444455444444444322221 11234456666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCChHH-H
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHG-A 228 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-a 228 (468)
..+.++++.-.+.....|++-+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.--...++.- |
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7788899988888888887666666666666777889999999999999987421 255666666533222222211 2
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC
Q 012234 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307 (468)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (468)
..+ -.+.+-.+.|...+..-|+-.++.++|...|++..+. .|. ...|+.+.+-|....+...|..-++.+++ -.
T Consensus 320 ~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 320 QNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 222 2233334567777788888899999999999999885 444 45677788889999999999999999984 22
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
+.|-..|-.|.++|.-.+...-|+-+|++.. .+| |+..|.+|..+|.+.++.++|+..|.++...+..+..++..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4488899999999999999999999999983 455 78999999999999999999999999999998778899999999
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 012234 386 LYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~ 405 (468)
.|-+.++.++|...+++-++
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988876
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=2.9e-11 Score=110.64 Aligned_cols=393 Identities=10% Similarity=0.099 Sum_probs=290.8
Q ss_pred HHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHhC
Q 012234 15 GYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI----ESHIKMDLWICNALIGMYAKC 90 (468)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 90 (468)
+|.+..-|+.|..++.... ..+|.+...|.+....--.+|+.+...++...-+ ..|+..+..-|-.=...|-+.
T Consensus 415 AlarLetYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 4444555666666666664 2245566666665555556666666666555432 335555555555555556666
Q ss_pred CCHHHHHHHHhhcCC------CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHH
Q 012234 91 GSLDYARALLDEMSD------KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDL 161 (468)
Q Consensus 91 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 161 (468)
|..--+..+...... .-..+|..-...|.+.+-++-|..+|....+ .+...|...+..--..|..+....+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 655555555544432 1234677777778888888888888888776 3345677766666677999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CC
Q 012234 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS 239 (468)
Q Consensus 162 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 239 (468)
|++.... ++.....+....+.+...|+...|+.++..+.+.. +.+..++..-+.....+..++.|..+|.+... +.
T Consensus 573 lqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 573 LQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 9999886 34455566666778888999999999999999876 44778888889999999999999999998875 45
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
...|.--+....-.++.++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+ .++..+..|-.|.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHH
Confidence 567777777777789999999999998875 455 45677788888889999999988877654 4455677888888
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------------
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--------------------- 375 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------------- 375 (468)
..=.+.|.+.+|..++++.. .+.+...|...+..-.+.|+.+.|..+..++++..|.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH
Confidence 88889999999999999874 4457889999999999999999999888887665443
Q ss_pred ---------CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 376 ---------NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 376 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
|+.+...++..+....++++|++.|.+..+.+. +-|..|.
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa 855 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWA 855 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHH
Confidence 444577888889999999999999999887654 3444453
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=6.1e-15 Score=130.89 Aligned_cols=252 Identities=14% Similarity=0.110 Sum_probs=89.6
Q ss_pred HHHhhccCChHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCH
Q 012234 49 LQACGQSSDIVFGMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFV 124 (468)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 124 (468)
...+.+.|++++|+++++...... .+.+...|..+.......++.+.|...++++... ++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444555555566665554333322 2223444444444555555566666666555542 23344444444 455566
Q ss_pred HHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 125 EKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 125 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++|.++++...+ ++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|...++.+.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666655554432 444556666667777777777777777765432 23455566666677777777777777777777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK---GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
+.. +.+..+...++..+...|+.+++..++.... ..++..+..+..++...|++++|+.+|++..... +.|....
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 764 3345666677777777777777655555443 3456677777788888888888888888877642 3366777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
..+..++...|+.++|..+.+++.+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 7778888888888888887776653
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=2.4e-12 Score=120.19 Aligned_cols=289 Identities=9% Similarity=0.031 Sum_probs=187.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCee--hHHHHHHHHHhcCCHHHHH
Q 012234 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--KDEV--SYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~A~ 128 (468)
...|+++.|.+.+....+..+.| ...+-....++...|+.+.|.+.+++..+ |+.. ........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45799999999998877764332 23334556778888999999999988754 3332 2233456666777777777
Q ss_pred HHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 129 DLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 129 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
..++.+.+ | +...+..+...+...|++++|.+.+..+.+.++. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH-----------------------
Confidence 77777654 3 4456667777777777777777777777776533 2222211100
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT---FT 279 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~ 279 (468)
..+..++..-......+.....+..... .++..+..++..+...|+.++|.+++++..+. .||... ..
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0000111111111223333444444433 36667777888888889999999999888875 334331 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHc
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK--M-PVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~ 356 (468)
...-.....++.+.+.+.+++..+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+...
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 122223445778888888888876522222215667888999999999999999994 3 4688888888999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 012234 357 GDVELGKFVCDHLFEI 372 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~ 372 (468)
|+.++|.+++++....
T Consensus 384 g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 384 GDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988664
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=6.6e-12 Score=117.31 Aligned_cols=279 Identities=11% Similarity=0.012 Sum_probs=172.0
Q ss_pred hcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhhHH
Q 012234 120 VHGFVEKAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV--TISSIFSLFSHFSNLKGGK 194 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~ 194 (468)
..|+++.|.+.+.+..+ |+. ..+-....++.+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555443 222 22233344555566666666666665543 23322 2222345555566666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cchHH----HHHHHHHHcCChHHHHHHHHHHH
Q 012234 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWT----AIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~----~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
..++.+.+.. +.++.+...+...+...|+++.|.+.+..+.+.+ ...+. .........+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666654 3344555566666666666666666666655421 11121 11111123333333444555554
Q ss_pred HCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhH---HHHHHHHHhccCChHHHHHHHHhC-CCC
Q 012234 268 NNGI---QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH---YACMVGVLSRARRISEATEFVSKM-PVK 340 (468)
Q Consensus 268 ~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 340 (468)
+... +.+...+..+...+...|+.++|...+++..+. .|+... .....-.....++.+.+.+.+++. +..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 137788888999999999999999999999965 344331 111222233457888888888776 334
Q ss_pred C-CH--HHHHHHHHHHHHcCChHHHHHHHHH--HHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 341 P-SA--KVWGALLYGASISGDVELGKFVCDH--LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 341 ~-~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
| |+ ....++...+.+.|++++|.+.|++ +.+..|++ ..+..++..+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 34 6778999999999999999999994 55666654 5577999999999999999999998654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.9e-13 Score=123.26 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=216.1
Q ss_pred CCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChhhHHHH
Q 012234 122 GFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 122 ~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
-+..+|+..|...+. +| ..+...+..+|...+++++|.++|+.+.+.. ..-+..+|++.+-.+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356788888888654 33 3456678889999999999999999988752 123556777776544321 12222
Q ss_pred H-HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 197 H-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 197 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
+ +.+.+.. +..+.+|.++.++|.-.++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..... .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 2 2333332 56678999999999999999999999999887554 57888888888999999999999987653 3
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHH
Q 012234 273 PD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGA 348 (468)
Q Consensus 273 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~ 348 (468)
|. -..|..+...|.+.++++.|+-.|+++. .+.| +......+...+.+.|+.++|+.+++++- . +-|+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 32 2355567788999999999999999998 5567 55666778888999999999999999983 3 335666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+..+...+++++|...++++.+..|++..+|..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 77788889999999999999999999999999999999999999999999887776544
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=2.4e-11 Score=115.29 Aligned_cols=312 Identities=12% Similarity=0.120 Sum_probs=165.7
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 98 (468)
.|++++|.+++.+..++. +.+...|.+|...|-+.|+.+++...+-.+.-.+ +.|...|..+.......|.++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 367777777777766332 4556667777777777777766666554443333 2355666666666667777777777
Q ss_pred HHhhcCCCCeehH---HHHHHHHHhcCCHHHHHHHHhhCCCCCH--------hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 99 LLDEMSDKDEVSY---SAIISGYMVHGFVEKAMDLFQVMKRPGL--------STWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 99 ~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
+|.+..+.++.-| .--...|-+.|+...|.+.|.++.+.++ ..--.++..+...++-+.|++.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7776665433323 2334556666777777666666654111 1222334555555555666666666554
Q ss_pred C-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC---------------------------CCCchhHHHHHHHHH
Q 012234 168 S-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR---------------------------YDRNIYVATAIIDTY 219 (468)
Q Consensus 168 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~ 219 (468)
. +-..+...+++++..+.+...++.+........... ..++..++ .+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 2 112233345555666666666666655555544411 11122220 111122
Q ss_pred Hhc--CChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 012234 220 AKT--GFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293 (468)
Q Consensus 220 ~~~--g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 293 (468)
... +...+++..|-.... .++..|.-+..++...|++.+|+.+|..+......-+...|..+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 222 222222222221111 12334555666666666666666666666554333345556666666666666666
Q ss_pred HHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 294 AWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 294 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
|.+.|+++... .| +...-..|...+.+.|+.++|.+.+..+
T Consensus 468 A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 468 AIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 66666666532 33 3344445555666666666666666664
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4.9e-13 Score=122.60 Aligned_cols=276 Identities=14% Similarity=0.177 Sum_probs=209.2
Q ss_pred CHHHHHHHHhhcCCC--C-eehHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 92 SLDYARALLDEMSDK--D-EVSYSAIISGYMVHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 92 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+..+|...|..+.+. + .-....+..+|...+++++|.++|+.+.+ .+...|.+.+-.+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456777777775542 3 23445567788888888888888888765 455677776654432 2223333
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcc
Q 012234 163 -REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241 (468)
Q Consensus 163 -~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 241 (468)
+.+.... +-.+.+|..+.++|+-.++.+.|.+.|+.+++.+ +...++|+.+.+-+.....+|.|...|+.....++.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2233332 4456788888889998999999999988888765 336778888888888889999999999998887665
Q ss_pred h---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHH
Q 012234 242 I---WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACM 317 (468)
Q Consensus 242 ~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 317 (468)
- |.-+...|.++++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.++|+.+++++.. +.| |+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 4 5556678999999999999999988753 23566777788888999999999999999884 344 55555556
Q ss_pred HHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 318 VGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+..+...++.++|+..+++++ ..| +...+..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 777888999999999999995 445 567888888999999999999999999999998643
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-11 Score=110.34 Aligned_cols=259 Identities=12% Similarity=0.039 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
.......-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++..-|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 34444556777899999999999988864 6666667777778889999888888877787764 556778888888888
Q ss_pred hcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
-.|++.+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+.|.++
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 89999999999998776443 58999999999999999999999887663 222222333455567888999999999
Q ss_pred HHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 298 FNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--------VK-PSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 298 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
|.... ++.| |+...+-+.-.....+.+.+|..+|+... .. .-..+++.|..+|.+.+.+++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99988 5556 67778888777788899999999998762 11 135678999999999999999999999
Q ss_pred HHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+++.+.|.+..++..++-+|...|+++.|+..|.+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877654
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.1e-11 Score=102.32 Aligned_cols=281 Identities=11% Similarity=0.140 Sum_probs=139.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-Cee------hHHHHHHHHHhcCCHHHHH
Q 012234 56 SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEV------SYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~li~~~~~~~~~~~A~ 128 (468)
...++|.+.|-+|.+..+. +..+.-+|.+.|.+.|..|.|+++...+.+. |.. +...|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555555553322 3334444555555555555555555544432 211 1222333444444445555
Q ss_pred HHHhhCCCCCH---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 129 DLFQVMKRPGL---STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 129 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
.+|..+.+.+. .....|+..|....+|++|+++-+++...+-.+...-
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----------------------------- 178 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----------------------------- 178 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-----------------------------
Confidence 55544443111 1333444445555555555555444444332221110
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
-...|..|...+....+.+.|..++.+..+.|+ .+--.+...+...|+++.|.+.++...+.+..--..+...|.
T Consensus 179 --IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 179 --IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 012344455555555666666666666554332 233344456666777777777777666653333344566666
Q ss_pred HHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc---CC
Q 012234 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF-VSKMPVKPSAKVWGALLYGASIS---GD 358 (468)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~---g~ 358 (468)
.+|...|+.++...++.++... .+....-..+.+......-.+.|..+ .+++..+|+...+..++...... |.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 7777777777777777666643 34444444444444444444444433 34445677777777776654432 23
Q ss_pred hHHHHHHHHHHHh
Q 012234 359 VELGKFVCDHLFE 371 (468)
Q Consensus 359 ~~~a~~~~~~~~~ 371 (468)
..+....++.|+.
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 4444445555544
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=3.2e-10 Score=100.22 Aligned_cols=395 Identities=11% Similarity=0.092 Sum_probs=299.6
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
.+...|-..+..=.++.....|..+++... .. +|.-...|.-.+..--..|+...|.++|+.-.+ ..|+...|++.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAv-t~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAV-TI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHH-Hh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 456667778888889999999999999987 32 233334455555555677999999999998877 57899999999
Q ss_pred HHHHHhCCCHHHHHHHHhhcC--CCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCCh
Q 012234 84 IGMYAKCGSLDYARALLDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRH 155 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~ 155 (468)
|+.=.+-+.++.|..++++.. .|+..+|.....--.++|+...|..+|+...+ -+...+++....-.++..+
T Consensus 181 I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865 58888999988888999999999999988765 2234567777777778889
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhhHHHH--------HHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 156 EAVLDLVREMQASGVRPN--AVTISSIFSLFSHFSNLKGGKEI--------HGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.|.-+|+-.++. ++.+ ...|.....---+-|+.....+. |+..++.+ +.|-.++--.+..-...|+.
T Consensus 261 ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 261 ERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCH
Confidence 9999999988876 2333 23444444444455665554433 34444443 45556677778888888999
Q ss_pred HHHHHHHhhccCCCcc-----hHHHHHH--------HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhcc
Q 012234 226 HGAQRVFDRFKGRSLI-----IWTAIIS--------AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL----SACAHS 288 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~-----~~~~l~~--------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~----~~~~~~ 288 (468)
+...++|++....-+. .|...|- .-....+.+.+.++++..++. ++....||.-+- ..-.++
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 9999999988753221 1222211 123467899999999999884 444556665443 334567
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.++..|.+++.... |.-|-..+|...|..=.+.+.++.+.+++.+. ...| +..+|......-...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999988 77899999999999999999999999999987 3444 6889999999899999999999999
Q ss_pred HHHHhhCCCC--cchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 367 DHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 367 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
+-++....-+ ...+...++.-...|.++.|..+++++.+..-
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9888753211 23466677777789999999999999988653
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=9.2e-11 Score=101.57 Aligned_cols=284 Identities=11% Similarity=0.058 Sum_probs=197.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C--eehHHHHHHHHHhcCCHHHHHH
Q 012234 54 QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--D--EVSYSAIISGYMVHGFVEKAMD 129 (468)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~ 129 (468)
-.|++.+|.+...+-.+.+..| ...|..-+.+.-..|+.+.+-.++.+..++ | ...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3588888888888877776443 334555667777888888888888888764 3 2344555566677777777776
Q ss_pred HHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 012234 130 LFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206 (468)
Q Consensus 130 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 206 (468)
-+.++.+ .+.........+|.+.|++.....++..|.+.|+-.+...-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 6665543 556677888888888888888888888888877655443210
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
....++..+++-....+..+.-...++.... .++..-..++.-+.+.|+.++|.++..+..+.+..|+ . ...-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHH
Confidence 0112333344444444444444445555443 4566667777788888889999998888888777666 2 2223
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
.+.+.++...-.+..++..+.++..| ..+..|...|.+.+.|.+|.+.|+.. +..|+..+|+-+.+++...|+..+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 45677787777777777776554444 67778888888888898888888866 5778888888888888888888888
Q ss_pred HHHHHHHHhh
Q 012234 363 KFVCDHLFEI 372 (468)
Q Consensus 363 ~~~~~~~~~~ 372 (468)
.+..++.+..
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3.4e-11 Score=101.12 Aligned_cols=306 Identities=13% Similarity=0.138 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHhhcCCCCeehH---HHHHHHHHhcCCHHHHHHHHhhCCC-CCHh------HHHHHHHHHHhCCChHHHH
Q 012234 90 CGSLDYARALLDEMSDKDEVSY---SAIISGYMVHGFVEKAMDLFQVMKR-PGLS------TWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~g~~~~a~ 159 (468)
.++.++|.++|-+|.+.|+.++ -+|.+.|-+.|..+.|+++-..+.+ ||.. ..-.|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4677778888877776555443 4566667777777777777766554 4432 2344555666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (468)
.+|..+.+.| ..-......|+..|....+|++|.++-..+.+.+..+... .+..
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ---------------------- 181 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH----------------------
Confidence 7777666543 2223344555556666666666666655555544222211 1222
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
.|.-+...+....+++.|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~ 257 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYE 257 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 2344556666778899999999999876322 3344445778889999999999999999876 33334677889999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH---cCChHH
Q 012234 320 VLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ---AGRWDE 395 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 395 (468)
+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|. ...+..|++.... .|++.+
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhh
Confidence 999999999999999877 45566666666666666666778888888887777774 4555566655433 356888
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 012234 396 ADRVREQMKESGLAKIPGRSWIECSGGLQSF 426 (468)
Q Consensus 396 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 426 (468)
-..+++.|....++..|......++-..+.|
T Consensus 337 sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 337 SLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 8899999999888888876666666555554
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.6e-10 Score=100.06 Aligned_cols=281 Identities=12% Similarity=0.097 Sum_probs=190.5
Q ss_pred cCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 012234 121 HGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
.|++.+|++...+-.+ .....|..-+.+..+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655433 2223344444556666777777777777665422334444445555666677777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc-----------chHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-----------IIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
..+.+.+ +.++.+......+|.+.|++.....++.++.+.+. .+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7766665 34455666677777777777777777777766432 35666666666666666656667665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHH
Q 012234 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM--PVKPSAK 344 (468)
Q Consensus 267 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~ 344 (468)
-.+ .+-++..-.+++.-+...|+.++|.++.++..+. +..|... ..-.+.+-++...-++..++. ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 443 4555667777888899999999999999988876 5566511 122334555555544444433 1233458
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
.+.+|...|.+++.+.+|...|+.+.+..| +...|..+++++.+.|+..+|.++.++....-..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 889999999999999999999998888877 5688999999999999999999999887754433
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.7e-10 Score=98.40 Aligned_cols=353 Identities=11% Similarity=0.062 Sum_probs=238.4
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCe-ehHHHHHHHHH
Q 012234 41 DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE-VSYSAIISGYM 119 (468)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~ 119 (468)
|..-+......+.+.|....|.+.|...+..- +..-..|-.|.... -+.+.+..+.......+. -.---+..++-
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 33333333444556677777777777665542 22333444443332 233333333322222110 01112334444
Q ss_pred hcCCHHHHHHHHhhCCC---CCHhHH-HHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChhhH
Q 012234 120 VHGFVEKAMDLFQVMKR---PGLSTW-NAVISGLVQNNRHEAVLDLVREMQASGV--RPNAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~---~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a 193 (468)
.....+++..-.+.... |+..-+ +....+.-...++++|+.+|+++.+++. --|..+|+.++-.-.....
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk---- 314 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK---- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----
Confidence 55566666655555443 333322 2333445667899999999999988731 1256677766533222111
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
...+.+-...--+--+.|...+.+-|.-.++.++|...|++..+-|+ .+|+.+..-|....+...|++.++...+-.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11222111111133456677788888999999999999999887444 689999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHH
Q 012234 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWG 347 (468)
Q Consensus 271 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ 347 (468)
+-|-..|-.|.++|.-.+...=|+-.|++... ++| |...|.+|..+|.+.++.++|++.|.+.- ...+...+.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 45778999999999999999999999999884 456 78999999999999999999999999884 233568899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh-------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI-------EPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.|...+-+.++.++|...+++.++. .|....+...|+.-+.+.+++++|..+......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999999999999999998873 233444556688889999999999987766544
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=3e-11 Score=104.44 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (468)
...+..+...+...|++++|...+++..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 455666777778888888888888776542 34567777888888999999999998888763 33556777788888
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHH
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
...|++++|...+++.............+..+...+...|++++|...+.+.. ..| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999987542222344567778888999999999999998872 333 4677888899999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999998877553
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=5.1e-11 Score=110.41 Aligned_cols=231 Identities=14% Similarity=0.187 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHc-----C-CCCchh-HHHHHHHHHHhcCChHHHHHHHhhccC-------C-C
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKN-----R-YDRNIY-VATAIIDTYAKTGFLHGAQRVFDRFKG-------R-S 239 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-~ 239 (468)
.+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666677777777777666666553 1 112222 223466777788888888777777653 1 2
Q ss_pred c---chHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcC--C
Q 012234 240 L---IIWTAIISAYAAHGDASKAVSLFNEMLNN-----GIQ-PDP-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYG--I 307 (468)
Q Consensus 240 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 307 (468)
+ .+++.|..+|.+.|++++|...+++..+- |.. |.. ..++.+...|...+++++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 46777888888888888888777766431 222 222 2466677788889999999999987765432 2
Q ss_pred CCC----HhHHHHHHHHHhccCChHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 012234 308 QPS----VEHYACMVGVLSRARRISEATEFVSKMP---------VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEI- 372 (468)
Q Consensus 308 ~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 372 (468)
.++ ..+++.|...|...|++++|.++++++. ..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4578899999999999999999998772 122 2457788889999999999999999887654
Q ss_pred ---CCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 373 ---EPEN---TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 373 ---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+|++ ..+|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 45688999999999999999999888865
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=8.3e-09 Score=93.94 Aligned_cols=382 Identities=11% Similarity=0.079 Sum_probs=240.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
+..+..+|++++|++....+. ..+ +-+...+..-+-+..+.+.+++|+.+.+.-.. ...+...+---..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil-~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKIL-SIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHH-hcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 556677899999999999998 544 55566677778888999999999966543211 11111111123455667899
Q ss_pred HHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------------------------------HhH
Q 012234 93 LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG-------------------------------LST 141 (468)
Q Consensus 93 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-------------------------------~~~ 141 (468)
.|+|+..++.....+..+...-...+.+.|++++|..+|+.+.+.+ ..+
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 9999999996555566677777788889999999999998884210 012
Q ss_pred HHHH---HHHHHhCCChHHHHHHHHHHHHC-------CCCC------CHH-HHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 142 WNAV---ISGLVQNNRHEAVLDLVREMQAS-------GVRP------NAV-TISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 142 ~~~l---~~~~~~~g~~~~a~~~~~~m~~~-------~~~p------~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
|..+ ...+...|++.+|+++++..... +-.- ... .-..+.-.+...|+-++|..+|...++.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3322 34567789999999999888321 1111 111 11234445678899999999999999876
Q ss_pred CCCchh----HHHHHHHHHHhc---------------------------------------------CChHHHHHHHhhc
Q 012234 205 YDRNIY----VATAIIDTYAKT---------------------------------------------GFLHGAQRVFDRF 235 (468)
Q Consensus 205 ~~~~~~----~~~~l~~~~~~~---------------------------------------------g~~~~a~~~~~~~ 235 (468)
. +|.. ..|.|+.+-... +..+.+.++...+
T Consensus 255 ~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 P-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred C-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 3 2221 122222111110 1111111111111
Q ss_pred cCCC-cchHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------Hhhhh
Q 012234 236 KGRS-LIIWTAIISAY--AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN--------AMSGQ 304 (468)
Q Consensus 236 ~~~~-~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~ 304 (468)
.... ...+..++... ++...+..+.+++...-+....-........++.....|+++.|..++. .+.+-
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 1111 12334444322 2223466777777766554222224455666777888999999999998 44322
Q ss_pred cCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKM--------PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+ ..+.+...+...+.+.++.+.|..++.+. ...+. ..++.-++..-.++|+-++|..+++++++.+|+
T Consensus 414 -~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 414 -K--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred -c--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 3 33445566777788877766666665544 11221 233444445556789999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
+..+...++.+|++. +.+.|..+-+.+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999987 677787775443
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=2.7e-11 Score=114.50 Aligned_cols=265 Identities=17% Similarity=0.196 Sum_probs=195.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (468)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999999888889999999999988888877665 677
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
..+|..|..+|..+|+... ++..++ ....+...+...|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999876 333332 223355566777776666667666543334455544 3555
Q ss_pred HHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI-SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
...-.|-++.+++++..++...........+.-+.. ...+++-...++...+ .+++.+|..+..+-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 667778899999999988622111111112333332 3344444445554444 4588999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcchhhh
Q 012234 399 VREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464 (468)
Q Consensus 399 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 464 (468)
++.+|++.|++..++.-|..+.+ ..+. .-++.+.+-|++.|+.|+.+|--+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~~~-------q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------INAA-------QVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Cccc-------hHHHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999988875433 1111 123467888999999999998644
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.3e-10 Score=110.09 Aligned_cols=333 Identities=13% Similarity=0.142 Sum_probs=175.0
Q ss_pred HHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 012234 28 LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107 (468)
Q Consensus 28 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 107 (468)
++..+. ..|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. +|.
T Consensus 12 fla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 344454 5666677777777777777777776666 6666666666666666666666666666665554 556
Q ss_pred eehHHHHHHHHHhcCCHHH---HHH--------------------HHhhCCC-C-CHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 108 EVSYSAIISGYMVHGFVEK---AMD--------------------LFQVMKR-P-GLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~---A~~--------------------~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+.+|..|..+|...|++.. ..+ ++..+.- | ....-...+......|-++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777666543 222 1111110 0 0001112233344455566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc--
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-- 240 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 240 (468)
..+..... +. ++...++-+.... .-.+++........-.|++.++..+++.-..+|+.+.|..++.+|.+.+.
T Consensus 163 ~~~Pvsa~--~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 163 AKVPVSAW--NA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hhCCcccc--cc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 54432210 00 1111233332222 22233333322221157777777777777778888888888888776543
Q ss_pred --chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 241 --IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 241 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
.-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.. | .+....+++-+
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~-sq~~hg~tAav 304 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------G-SQLAHGFTAAV 304 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------c-cchhhhhhHHH
Confidence 223333333 66777777777777778888888877777776666444111111 1 22222222222
Q ss_pred HHHhccCChHHHHHHHHh---------CC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCcch
Q 012234 319 GVLSRARRISEATEFVSK---------MP------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI----EPENTGN 379 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~---------~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 379 (468)
..-.-.| ..|.+.+++ .+ ..-...+|. +..-...+|.-++.+++-..+... .+.+...
T Consensus 305 rsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 305 RSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 2222222 222222211 11 111123332 233333478888888877776543 4556677
Q ss_pred HHHHHHHHHHc
Q 012234 380 YIIMANLYSQA 390 (468)
Q Consensus 380 ~~~l~~~~~~~ 390 (468)
|..++.-|.+.
T Consensus 382 ~~~~lrqyFrr 392 (1088)
T KOG4318|consen 382 FGALLRQYFRR 392 (1088)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=5.5e-13 Score=83.26 Aligned_cols=50 Identities=32% Similarity=0.620 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ 54 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 54 (468)
||+.+||++|.+|++.|++++|.++|++|. +.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 889999999999999999999999999998 88899999999999988864
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=4.2e-11 Score=100.73 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=154.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcC
Q 012234 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHG 254 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 254 (468)
+.+.++|.+.|.+.+|...++...+. .|.+.+|..|..+|.+..+...|+.++.+-.+. ++....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 44556666666666666666655554 344445555666666666666666666655442 2223334455666667
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 334 (468)
+.++|.++++...+.. +.+.....++...|...++.+-|+.+++++..- |+ .++..|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777766642 334455555666667777777777777777754 43 34566666776777777777777766
Q ss_pred HhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 335 SKMP---VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 335 ~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++.. ..|+ ..+|..+.......||+..|.+.|+-++..+|++...++.|+-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6552 2233 5688888888889999999999999999999999999999999999999999999999887654
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=3.3e-10 Score=110.05 Aligned_cols=261 Identities=13% Similarity=-0.001 Sum_probs=183.7
Q ss_pred CHhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------ccCChhhHHHHHHHHHH
Q 012234 138 GLSTWNAVISGLVQ-----NNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFS---------HFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 138 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 202 (468)
+...|...+.+... .+..++|+..|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 13467899999999876 454 345555554443 23457899999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 012234 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP-VTF 278 (468)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~ 278 (468)
.+ +.+...+..+...+...|++++|...|++..+. +...+..+..++...|++++|...+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 456677888888899999999999999997763 3457888888999999999999999999886 3432 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHH
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYGASI 355 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 355 (468)
..++..+...|++++|...++++.+. .+| ++..+..+..++...|+.++|...+.++. ..|+ ....+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988753 234 45556778888899999999999999873 4444 3445555556677
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.| +.|...++++.+..-..+.....+...|.-.|+-+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777777777665322222223366677778888877777 88877654
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.5e-10 Score=100.04 Aligned_cols=192 Identities=13% Similarity=0.050 Sum_probs=132.6
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHH
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGY 118 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 118 (468)
...+..+...+...|+++.|...++++.+..+ .+...+..+...+...|++++|.+.+++..+ .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44566666667777777777777777766542 2455666677777777777777777776654 2344566666777
Q ss_pred HhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 012234 119 MVHGFVEKAMDLFQVMKR-----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 193 (468)
...|++++|...|++... .....+..+..++...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777653 123456667777888888888888888877653 33455677777788888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012234 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236 (468)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (468)
...++...+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888887776 24455566667777778888888888766654
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=3.3e-10 Score=110.06 Aligned_cols=257 Identities=10% Similarity=0.029 Sum_probs=177.8
Q ss_pred CCcchHHHHHHHhh-----ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---------hCCCHHHHHHHHhhcCC
Q 012234 40 PDGVTVVSVLQACG-----QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA---------KCGSLDYARALLDEMSD 105 (468)
Q Consensus 40 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 105 (468)
.+...|...+++.. ..+++++|...+++.++..+. +...+..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555555531 124567899999999887643 4556666665544 23458899999988776
Q ss_pred C---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 012234 106 K---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA-VTIS 178 (468)
Q Consensus 106 ~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~ 178 (468)
. +..++..+...+...|++++|...|++..+ |+ ...+..+...+...|++++|+..+++..+.+ |+. ..+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 3 566788888888899999999999998765 43 4578888889999999999999999998864 432 2333
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCC
Q 012234 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGD 255 (468)
Q Consensus 179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 255 (468)
.++..+...|++++|...++.+.+...+.++..+..+..++...|++++|...+.++....+ ...+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 44445667889999999999888765333555677788889999999999999998765433 34556666667777
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 256 ASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 256 ~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
+.|...++.+.+. ...+....+..+ .+.-.|+.+.+..+ +++.+.
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhcc
Confidence 4777777776553 122222223333 34445666666555 777653
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.9e-09 Score=91.99 Aligned_cols=394 Identities=11% Similarity=0.063 Sum_probs=220.2
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
+.-+..++++..|+.+++--. ..+-.-...+-..+..++.+.|++++|...+..+.+.. .++...+..|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 344556778899999888765 33211112223334445568899999999999887754 5566666677777777888
Q ss_pred HHHHHHHHhhcCCC---------------Cee--------------hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhH
Q 012234 93 LDYARALLDEMSDK---------------DEV--------------SYSAIISGYMVHGFVEKAMDLFQVMKR--PGLST 141 (468)
Q Consensus 93 ~~~A~~~~~~~~~~---------------~~~--------------~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~ 141 (468)
+.+|..+-....+. |.. .-.+|.+.....-.+.+|++++.+... |+-..
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 88888887766531 111 111223333333456667777777664 33334
Q ss_pred HHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHH--------------HHHHHHcCC
Q 012234 142 WNAV-ISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGKEI--------------HGYAVKNRY 205 (468)
Q Consensus 142 ~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~--------------~~~~~~~~~ 205 (468)
.|.- .-+|.+..-++-+.++++-.++. .||+. ..+..+....+.=+-..|.+- .+.+.+.++
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 4433 34566777777777777776654 34432 222222222221111111111 111111110
Q ss_pred ------------CC-----chhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCC-------hHHHHH
Q 012234 206 ------------DR-----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD-------ASKAVS 261 (468)
Q Consensus 206 ------------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~ 261 (468)
-| -+..-..|+-.|.+.++.++|..+.+++....+.-|-.-.-.++..|+ ..-|..
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 00 111223344556677777777777777766555444333333333332 334444
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 012234 262 LFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 340 (468)
.|+-.-+++..-|.. ---++..++.-..++++.+.++..+..- =...|...+ .+.++++..|.+.+|+++|-++..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 444333333332321 1222334444455677777777777642 233344444 4788889999999999999887411
Q ss_pred --CCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhhC-CCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCcee
Q 012234 341 --PSAKVWG-ALLYGASISGDVELGKFVCDHLFEIE-PENTG-NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415 (468)
Q Consensus 341 --~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 415 (468)
.|..+|. .|..+|.+.+.++.|..++- +.+ |.+.. ....++..|.+++.+=-|.+.|+.+.... |+|. .
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pE-n 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPE-N 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcc-c
Confidence 2444554 45567788899988877653 343 33322 33455778889999988888898887654 4343 3
Q ss_pred EEE
Q 012234 416 WIE 418 (468)
Q Consensus 416 ~~~ 418 (468)
|-.
T Consensus 497 WeG 499 (557)
T KOG3785|consen 497 WEG 499 (557)
T ss_pred cCC
Confidence 653
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3.9e-12 Score=79.40 Aligned_cols=50 Identities=28% Similarity=0.588 Sum_probs=46.9
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1.5e-08 Score=95.42 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=157.7
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC--
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC-- 90 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 90 (468)
...+...|++++|++.++.-. ..+.............+.+.|+.++|..++..+++.++. +...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 456678999999999998865 234344455667788889999999999999999999854 666777777776333
Q ss_pred ---CCHHHHHHHHhhcCCC--CeehHHHHHHHHHhcCCHHH-HHHHHhhCCCCCH-hHHHHHHHHHHhCCChHHHHHHHH
Q 012234 91 ---GSLDYARALLDEMSDK--DEVSYSAIISGYMVHGFVEK-AMDLFQVMKRPGL-STWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 91 ---g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
.+.+....+|+++.+. ...+...+.-.+..-..+.. +...+..+...++ .+|+.|-..|....+..-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 2567778888877542 11111111111111111211 2222233333332 344444444544444444444444
Q ss_pred HHHHC----C----------CCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012234 164 EMQAS----G----------VRPNA--VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227 (468)
Q Consensus 164 ~m~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 227 (468)
..... + -.|+. .++..+...|...|++++|...++..++.. +..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 43321 0 01222 233444555666666666666666666653 2224555555666666666666
Q ss_pred HHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHhccCCHHHHHH
Q 012234 228 AQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV--------TFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 228 a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--------~~~~l~~~~~~~~~~~~a~~ 296 (468)
|.+.++...+-| -..-+..+..+.+.|++++|.+++......+..|... -......+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666555432 2344445556666666666666666655544322211 11233445666666666655
Q ss_pred HHHHhh
Q 012234 297 IFNAMS 302 (468)
Q Consensus 297 ~~~~~~ 302 (468)
.|..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 554443
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1e-07 Score=83.35 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=194.9
Q ss_pred HhcCCHHHHHHHHhhCC-----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhh
Q 012234 119 MVHGFVEKAMDLFQVMK-----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKG 192 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 192 (468)
+..++...|...+-.+. ..|+.....+..++...|+.++|+..|++.+.. .|+.. ..-...-.+.+.|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 34455555554443332 256677888889999999999999999888764 34332 22222333456777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
...+...+.... ..+...+-.-.......++++.|+.+-++..+.+. ..+-.-..++...|++++|.-.|+.....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777776666543 11222222233444566788888888888766444 44444456788889999999999888764
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH-HHH-hccCChHHHHHHHHhC-CCCCC-HHH
Q 012234 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV-GVL-SRARRISEATEFVSKM-PVKPS-AKV 345 (468)
Q Consensus 270 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~~A~~~~~~~-~~~~~-~~~ 345 (468)
-+-+..+|..|+.+|...|.+.+|...-+...+. ++.+..+...+. ..+ .....-++|.+++++. ...|+ ...
T Consensus 364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 1345678999999999999999988887777653 344555555442 222 2334467888888876 56776 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+.+...|...|..+.++.++++.+...|+ ...+..|++.+...+.+.+|...|....+..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 677788888999999999999999888774 4788899999999999999999988876544
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-09 Score=98.70 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=127.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~ 128 (468)
|-..+++....++.+...+.. ++....+..-|.++...|+..+-.-+=.++.+ | .+.+|-++.--|.-.|+..+|.
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 334445555555555544443 22333333444444444444443333333332 1 2344444444444445555555
Q ss_pred HHHhhCCCCCH---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 129 DLFQVMKRPGL---STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 129 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
+.|.+...-|. ..|-.+...|.-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.++....
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 55544433221 23444444455555555555444443321 01111112222233444444444444444444332
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCCCHHHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN----G--IQPDPVTFT 279 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~ 279 (468)
+. |+...+-+.-.....+.+.+|..+|+..... + ..--..+++
T Consensus 411 P~-------------------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 411 PS-------------------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred CC-------------------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 22 3344444444444445555555555544311 0 011334566
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGAS 354 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~ 354 (468)
.|..+|.+.+.+++|+..+++... -.+.+..++.++.-.|...|+++.|++.|.+. ...|+-.+...++..+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 666777777777777777776664 22345666666666777777777777777665 35666555555555443
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.2e-09 Score=90.69 Aligned_cols=268 Identities=13% Similarity=0.018 Sum_probs=197.0
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 183 (468)
|......+...+...|+.++|+..|++..-.|+.+ .....-.+.+.|+.++...+...+.... .-+...+..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 56667778888888888888888888776544332 2222334567788888888887776542 2233334344445
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
....++++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+.... .+..+|.-|+..|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 566778888888888777765 33444555455777888999999888887654 46689999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 261 SLFNEMLNNGIQPDPVTFTAVL-SACA-HSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
-.-+..... ++.+..+...+. ..|. ....-++|.+++++.. .+.|+ ....+.+...+.+.|...+++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 887776654 344566665552 3333 2334578999999877 45775 345667778889999999999999887
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 338 -PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 338 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
...||....+.|.+.+...+.+++|.+.|..++..+|.+..+.
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 5789999999999999999999999999999999999876443
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=6.2e-09 Score=97.69 Aligned_cols=396 Identities=12% Similarity=0.048 Sum_probs=239.3
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC-chHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM-DLWICNAL 83 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 83 (468)
|...|..|.-++.+.|+++.+.+.|++.. . +.--....|+.+...+...|.-..|..+++........| +...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~-~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQAL-P-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-H-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 55667777777788888888888888876 2 223455667777777777777777888777766554333 33333333
Q ss_pred HHHHH-hCCCHHHHHHHHhhcCC--------CCeehHHHHHHHHHhc-----------CCHHHHHHHHhhCCC---CCHh
Q 012234 84 IGMYA-KCGSLDYARALLDEMSD--------KDEVSYSAIISGYMVH-----------GFVEKAMDLFQVMKR---PGLS 140 (468)
Q Consensus 84 ~~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~---~~~~ 140 (468)
-..|. +.|..++++.+-.+... -.+..|..+.-+|... ....++++.+++..+ .|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33333 34555655555444432 1344555555444322 122346666666643 2222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
+.-.+.--|+-.++.+.|....++..+.+-.-+...+..+.-.+...+++..|..+.+.....- ..|......-++.-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhh
Confidence 2222233455667788888888888776556667777777777777888888888777665421 011000011111112
Q ss_pred hcCChHHHHHHHhhccC----------------------------C---C-cchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG----------------------------R---S-LIIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~----------------------------~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
..++.++++.....+.. + + +.++..+.......+ ..+..-.. +..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCc
Confidence 23333333332221110 0 0 111111111111000 00000000 111
Q ss_pred CCCC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 269 NGIQ--PDP------VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 269 ~~~~--p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
.-+. |+. ..+......+.+.++.++|...+.+..+ ..+-....|......+...|.+.+|.+.|... ..
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1111 221 2344556677888899999988888874 23345677877788889999999999988876 45
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 340 KPS-AKVWGALLYGASISGDVELGKF--VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 340 ~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|+ +....++...+...|+...|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+-|........
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 664 7788999999999998888877 99999999999999999999999999999999999998877543
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=3.6e-08 Score=90.90 Aligned_cols=394 Identities=12% Similarity=0.087 Sum_probs=215.8
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
..|..++..| ..+++...+.+.+.+.+. .+-...|.....-.+...|+.++|.......++.++. +...|+.+.-.
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 3445555544 346777777777777632 2333444444444455567777777776666664433 55667766666
Q ss_pred HHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+....++++|++.|..... + |...|.-+.-.-++.|+++.....-....+ | ....|..++.++.-.|+...|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777776543 2 344444444444455555554444444433 2 22345555555556666666666
Q ss_pred HHHHHHHCC-CCCCHHHHHHHH------HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012234 161 LVREMQASG-VRPNAVTISSIF------SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233 (468)
Q Consensus 161 ~~~~m~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 233 (468)
++++..+.. -.|+...|.-.. ......|..+.|.+.+..-...- ......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 666655442 133433332221 12234455555554444332211 0111111223344555555666666655
Q ss_pred hccCCCc--chHHH-HHHHHHH-c----------------------------------CChHHHHHHHHHHHHCCCCCCH
Q 012234 234 RFKGRSL--IIWTA-IISAYAA-H----------------------------------GDASKAVSLFNEMLNNGIQPDP 275 (468)
Q Consensus 234 ~~~~~~~--~~~~~-l~~~~~~-~----------------------------------g~~~~a~~~~~~m~~~~~~p~~ 275 (468)
.+..+++ ..|.. +..++.+ . .-.+....++..+.+.|+++--
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 5554333 11111 1112111 1 1122233344555555554422
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhc-C------------CCCCHhHH--HHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQY-G------------IQPSVEHY--ACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~------------~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
.. +...|-.-...+-.+++.-.+.... | -+|....| -.++..+-+.|+++.|..+++.. ..
T Consensus 324 ~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 324 KD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred hh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 22 2222221111111111111111100 1 14555444 45678889999999999999987 45
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 340 KPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 340 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|+ +..|..-.+.+...|++++|...++++.+++.+|...-..-+.-..++++.++|.++....-+.|.
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 666 446666678899999999999999999999877765555677888899999999999999988775
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=2.2e-08 Score=92.10 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=127.4
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
..|-..+..+.++|+...-...|+..+....+......|...+......+-++.+..+++.-++..+ ..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 4577777888899999999999999886666666677899999999899999999999999887543 335677888
Q ss_pred HHhCCCHHHHHHHHhhcCCC----------CeehHHHHHHHHHhcCCH---HHHHHHHhhCCC--CCH--hHHHHHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSDK----------DEVSYSAIISGYMVHGFV---EKAMDLFQVMKR--PGL--STWNAVISGL 149 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~--~~~--~~~~~l~~~~ 149 (468)
+++.+++++|.+.+..+... +-..|.-+-....++-+. -....+++.+.. +|. ..|++|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 89999999999999988753 223455555555444332 224455555554 443 4789999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+.|.+++|..+|++.+.. ..+..-|..+..+|+.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 9999999999999998775 3344445555555543
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.5e-08 Score=87.97 Aligned_cols=359 Identities=12% Similarity=0.022 Sum_probs=233.3
Q ss_pred CCC-cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHH-HhCCCCchHH
Q 012234 3 KRD-IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVI-ESHIKMDLWI 79 (468)
Q Consensus 3 ~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 79 (468)
.|| ++-|.....+|...|+|+++.+--...+ + +.|+ +..+..=.+++-..|++++|+.=..... -.|+. +..+
T Consensus 145 ~p~epiFYsNraAcY~~lgd~~~Vied~TkAL-E--l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~ 220 (606)
T KOG0547|consen 145 CPDEPIFYSNRAACYESLGDWEKVIEDCTKAL-E--LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASI 220 (606)
T ss_pred CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh-h--cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchh
Confidence 466 7778999999999999999998888777 5 3455 3345555566677788877764332221 11221 2221
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC---CC-----------------------eehHHHHHHHHHh--cC---CHHHHH
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSD---KD-----------------------EVSYSAIISGYMV--HG---FVEKAM 128 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-----------------------~~~~~~li~~~~~--~~---~~~~A~ 128 (468)
--.+=+.+-+.|. ..+.+-+.+-.. |+ ..+...+..++.. .+ .+..|.
T Consensus 221 ~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~ 299 (606)
T KOG0547|consen 221 EPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAY 299 (606)
T ss_pred HHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHH
Confidence 1111111111111 112222221111 11 1112222222110 11 233333
Q ss_pred HHHhhCCC-------CC---H------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 012234 129 DLFQVMKR-------PG---L------STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192 (468)
Q Consensus 129 ~~~~~~~~-------~~---~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 192 (468)
..+.+-.. .+ . .+.......+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++
T Consensus 300 ~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~ 378 (606)
T KOG0547|consen 300 DKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEK 378 (606)
T ss_pred HHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHH
Confidence 33322211 11 1 12222222345578999999999999987533333 38888889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
....|..+.+.+ +-++.+|.--..++.-.+++++|..-|++...-+ +..|-.+.-+..+.+++++++..|++.+.+
T Consensus 379 ~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 379 MWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 5566677767777888899999999999987644 456666667777889999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-------H--hHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-------V--EHYACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 270 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
++--+..|+.....+...++++.|.+.|+..+. +.|+ + .+-..++ .+.-.+++..|+.++++. ..
T Consensus 458 -FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 458 -FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred -CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc
Confidence 555678899999999999999999999999874 3443 1 1111222 122348999999999988 45
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 340 KPS-AKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 340 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
.|. ...+..|...-.+.|+.++|+++|++...+-
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 554 6789999999999999999999999987663
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4.6e-10 Score=94.60 Aligned_cols=231 Identities=11% Similarity=0.080 Sum_probs=189.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012234 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222 (468)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (468)
+.+.++|.+.|-+.+|.+.++..+.. .|-+.||..|-+.|.+..++..|..++.+-.+.- +.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788999999999999999888776 6677788889999999999999999988877753 44555555677888888
Q ss_pred CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 223 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
++.++|.++|+...+ .++.+...+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|...++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998776 34556666677888899999999999999999876 77888888889999999999999998
Q ss_pred HhhhhcCCCCC--HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 300 AMSGQYGIQPS--VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 300 ~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+.... .-.|+ ..+|..+.......|++.-|.+.|+-.- ...+...++.|.-.-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88764 33343 4678888888889999999999998763 2335788999999999999999999999999988886
Q ss_pred Ccc
Q 012234 376 NTG 378 (468)
Q Consensus 376 ~~~ 378 (468)
-..
T Consensus 462 m~E 464 (478)
T KOG1129|consen 462 MAE 464 (478)
T ss_pred ccc
Confidence 433
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.8e-09 Score=96.08 Aligned_cols=88 Identities=16% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 012234 213 TAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHS 288 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 288 (468)
..+...|...|+.++|...|++..+ .++..|+.+...+...|++++|...|++..+. .| +...+..+..++...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3344444444444444444444432 12234555555555555555555555555443 22 233444444445555
Q ss_pred CCHHHHHHHHHHhh
Q 012234 289 GLVDKAWDIFNAMS 302 (468)
Q Consensus 289 ~~~~~a~~~~~~~~ 302 (468)
|++++|.+.|++..
T Consensus 146 g~~~eA~~~~~~al 159 (296)
T PRK11189 146 GRYELAQDDLLAFY 159 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555554
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=3.2e-08 Score=84.25 Aligned_cols=307 Identities=14% Similarity=0.114 Sum_probs=161.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHH---HHHHhcCCHHHHHHHHhhCCC--CCHhH-HHHHHHHH
Q 012234 76 DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII---SGYMVHGFVEKAMDLFQVMKR--PGLST-WNAVISGL 149 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~l~~~~ 149 (468)
++.-.--+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-|....+ ||-.. --.-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3444445777777888888888888888888887777665 356777777777777777665 44321 11223467
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012234 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229 (468)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 229 (468)
.++|.+++|..-|+..++.. |+..+- ..+..+.-..++-.. ....+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHH
Confidence 78888888888888887763 322110 011111100011000 011122233344555555
Q ss_pred HHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 230 RVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 230 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
.....+.+ .+...+..-..+|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++.. .
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---K 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---K 251 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---c
Confidence 55444443 233344444455555555555554444433321 1123333333344444555555555444444 2
Q ss_pred CCCCHhH----HHH---H------HHHHhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 307 IQPSVEH----YAC---M------VGVLSRARRISEATEFVSKM-PVKPS-----AKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 307 ~~p~~~~----~~~---l------~~~~~~~~~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
+.||... |.. + +....+.++|.++++-.+.. +..|. ...+..+-.++...|++.+|++.+.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2343211 110 0 11223445565555555443 23333 1122333344556677777777777
Q ss_pred HHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++++.+|+|..++..-+.+|.-...+++|+.-|+...+..
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777776665543
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=3.8e-09 Score=98.19 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC----------Cee-hHHHHHHHHHhcCCHHHHHHHHhhCCC----------C
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSDK----------DEV-SYSAIISGYMVHGFVEKAMDLFQVMKR----------P 137 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~----------~ 137 (468)
+...+...|...|+++.|+.+++...+. ... ..+.+...|...+++++|..+|+++.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666554431 111 223345566666777776666666542 2
Q ss_pred C-HhHHHHHHHHHHhCCChHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHccCChhhHHHHHHHHHHc---CCC
Q 012234 138 G-LSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GV-RPNAV-TISSIFSLFSHFSNLKGGKEIHGYAVKN---RYD 206 (468)
Q Consensus 138 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 206 (468)
. ..+++.|...|.+.|++++|...+++..+- |. .|... .++.+...|...+.+++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 235777777888888888877777765431 21 22222 3556667788888888888887766552 112
Q ss_pred C----chhHHHHHHHHHHhcCChHHHHHHHhhccCC--------C---cchHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 012234 207 R----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--------S---LIIWTAIISAYAAHGDASKAVSLFNEMLN--- 268 (468)
Q Consensus 207 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--- 268 (468)
+ -..+++.|...|...|++++|.++|+++.+. + ...++.|...|.+.+++.+|..+|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2357888999999999999999999887641 1 24678888899999999999988877543
Q ss_pred -CCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 269 -NGI-QPD-PVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 269 -~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 223 4678889999999999999998887765
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.7e-08 Score=89.82 Aligned_cols=217 Identities=12% Similarity=-0.027 Sum_probs=141.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012234 153 NRHEAVLDLVREMQASG-VRPN--AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229 (468)
Q Consensus 153 g~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 229 (468)
++.+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|....+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 1222 2345566667777788888887777777765 345677777888888888888888
Q ss_pred HHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 230 RVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 230 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
..|++..+- +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...|.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 888877652 3457777888888889999999999888875 34432222222234456788999998876553 2
Q ss_pred CCCCHhHHHHHHHHHhccCChH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 307 IQPSVEHYACMVGVLSRARRIS--EATEFVSKM-PV----KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~-~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
..|+...+ .+...+ .|+.. ++.+.+.+. .. .| ....|..+...+...|++++|+..|+++.+.+|++.
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23433222 233222 34433 333333321 11 11 346788999999999999999999999999997553
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=8.9e-08 Score=80.09 Aligned_cols=385 Identities=10% Similarity=0.014 Sum_probs=247.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHH-HHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN-ALIGM 86 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 86 (468)
.+++.+..+.+..++.+|++++..-. +.. +.+....+.+..+|-+..++..|-..++++...-++ ..-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~-Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSEL-ERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHH
Confidence 36777888889999999999999887 543 347777888888889999999999999998876433 33332 23556
Q ss_pred HHhCCCHHHHHHHHhhcCCCC-eehHHHHHH--HHHhcCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSDKD-EVSYSAIIS--GYMVHGFVEKAMDLFQVMKR-PGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+.+.+.+..|+++...|.+.+ ...-..-+. .....+++..+..++++.+. .+..+.+.......+.|+++.|++-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 678899999999999888742 211111122 23467889999999999984 66777777778888999999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchh----------------------------HHH
Q 012234 163 REMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY----------------------------VAT 213 (468)
Q Consensus 163 ~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~ 213 (468)
+...+- |..| ...|+..+ +..+.|+...|.+...+++++|++..+. .+|
T Consensus 168 qaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 998875 4444 45666554 5567899999999999999887642211 112
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGR-----SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
.-...+.+.|+++.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+..... -...||..++-.||++
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 2223345778888898888888753 666666654332 23445555555555555533 3456788888889998
Q ss_pred CCHHHHHHHHHHhhhhcCCC-CCHhHHHHHHHHHh-ccCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC----hHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQ-PSVEHYACMVGVLS-RARRISEATEFVSKMPVKPSAKVWGALLYGA-SISGD----VEL 361 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~----~~~ 361 (468)
.-++.|-.++.+-... ... .+...|+ |++++. ..-..++|.+-+..+...-....-...+..- .+..+ ...
T Consensus 324 eyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888777653321 111 1233343 334433 3345666666655542000000000011111 11111 123
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+++-+++.+++.- .+...-++.|++..++.-+.++|+.-.+
T Consensus 402 ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 402 AVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 3344444444431 1344567788899999999999877654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=3.1e-09 Score=85.49 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVL 321 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 321 (468)
...+.-.|.+.|++..|..-+++..+.. +-+..++..+...|.+.|..+.|.+-|++..+ +.| +..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3445556677777777777777776652 22345666666667777777777777777663 234 456666666667
Q ss_pred hccCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH
Q 012234 322 SRARRISEATEFVSKMPVKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 397 (468)
|..|++++|...|++....|. ..+|..+..+..+.|+.+.|...+++.++.+|+.+.....+++.....|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776632332 4566777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCC
Q 012234 398 RVREQMKESGL 408 (468)
Q Consensus 398 ~~~~~m~~~~~ 408 (468)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777666554
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8e-07 Score=81.43 Aligned_cols=356 Identities=11% Similarity=0.069 Sum_probs=205.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH--hcC
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM--VHG 122 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~ 122 (468)
.-+=++.+...|++++|.+...+++..+ +-+...+..-+-+++..+++++|+.+.+.-........-.+=.+|| +.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 3344566778899999999999999987 4466777778888999999999997766544321111111344554 789
Q ss_pred CHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---------------------------HH
Q 012234 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN---------------------------AV 175 (468)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------------------~~ 175 (468)
..++|+..++...+.+..+...-...+-+.|++++|+.+|+.+.+++..-- ..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 999999999976666655666667888999999999999999976542210 11
Q ss_pred HHHHHHH---HHHccCChhhHHHHHHHHHHcCC-------CCch-------hHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 176 TISSIFS---LFSHFSNLKGGKEIHGYAVKNRY-------DRNI-------YVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 176 ~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
+|..+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-++-..|+.++|..++..+.+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 2333222 23345667777777666622110 0000 01122344455667777777766655442
Q ss_pred Cc-------chHHHHHHHHH---------------------------------------------HcCChHHHHHHHHHH
Q 012234 239 SL-------IIWTAIISAYA---------------------------------------------AHGDASKAVSLFNEM 266 (468)
Q Consensus 239 ~~-------~~~~~l~~~~~---------------------------------------------~~g~~~~a~~~~~~m 266 (468)
+. ..-|.++..-. ..+.-+.+.++....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 11 00011100000 000000000000000
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHH--------
Q 012234 267 LNNGIQPDPVTFTAVLSACAHS--GLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVS-------- 335 (468)
Q Consensus 267 ~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~-------- 335 (468)
.+..|. ..+..++..+.+. .....+..++...-+. .+-. ..+.-.++......|+++.|.+++.
T Consensus 334 --p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 334 --PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred --CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 011111 2222233222211 1244555555555432 1222 3445566677788999999999888
Q ss_pred hCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 336 KMP-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI----EPE---NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 336 ~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+. ..-.+.+...+...+.+.++.+.|..++..+... .+. -..++..++..-.+.|+-++|..+++++.+.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 332 3334556666777777888887788888777654 121 2234445556666789999999999999874
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=7.6e-07 Score=82.45 Aligned_cols=378 Identities=11% Similarity=0.087 Sum_probs=203.9
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 96 (468)
...|+-++|.+..+... +.. ..+.+.|+.+.-.+....++++|++.|..++..+.. |..++.-+.-.-+..|+++..
T Consensus 52 ~~lg~~~ea~~~vr~gl-r~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGL-RND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHh-ccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 34566666666666665 322 344555666665555666666777776666665532 555666555555556666655
Q ss_pred HHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHH------HHHHHhCCChHHHHHHH
Q 012234 97 RALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-----PGLSTWNAV------ISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 97 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l------~~~~~~~g~~~~a~~~~ 162 (468)
........+- ....|..++.++.-.|+...|..+++...+ |+...|.-. .......|.+++|++.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5555544432 334566666666666666666666555432 333322211 12334455555555555
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhcc----
Q 012234 163 REMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ-RVFDRFK---- 236 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~---- 236 (468)
..-... ..|...+ ..-...+.+.+++++|..++..++..+ +.+...|..+..++.+..+.-++. .+|....
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 443221 1111111 223344555666666666666665543 222222223333333222222222 3333322
Q ss_pred ------------------------------CCC-cchHHHHHHHHHHcCChHHHHHHHHHHHH----CC----------C
Q 012234 237 ------------------------------GRS-LIIWTAIISAYAAHGDASKAVSLFNEMLN----NG----------I 271 (468)
Q Consensus 237 ------------------------------~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~----------~ 271 (468)
+.+ +.++..+.+.|-.-...+-..++...+.. .| -
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 112 23344444444322222211112111111 11 1
Q ss_pred CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHH
Q 012234 272 QPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVW 346 (468)
Q Consensus 272 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~ 346 (468)
+|.. .++..++..+-..|+++.|+.+++.... -.|+ +..|..-.+.+...|.+++|..++++.. ..||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 4444 4556678888899999999999999884 3565 4556666788999999999999999884 45555544
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC---C---cc-hHHHH--HHHHHHcCChHHHHHHHHHH
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPE---N---TG-NYIIM--ANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~---~~-~~~~l--~~~~~~~g~~~~A~~~~~~m 403 (468)
..-+.-..+.++.++|.+++...-+.+.+ + .. +|..+ +.+|.+.|++-.|++=+...
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 45566667889999999998877665421 1 11 22222 56788888887777644333
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=8.5e-08 Score=90.42 Aligned_cols=281 Identities=13% Similarity=0.094 Sum_probs=150.0
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-c-----cC
Q 012234 118 YMVHGFVEKAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS-H-----FS 188 (468)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~-----~~ 188 (468)
+...|++++|++.++.-.. .|. .........+.+.|+.++|..++..+++.+ |+...|...+..+. - ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 3455555555555554333 332 234445556666666666666666666653 34443333332222 1 12
Q ss_pred ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH-HHHHHHhhccCCCc-chHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH-GAQRVFDRFKGRSL-IIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
+.+....+|+.+...- |.......+.-.+.....+. .+..++.....+++ .+|+.+-..|....+..-...++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3455555665554433 21111111111111111121 22333333444444 34444444555444444444444444
Q ss_pred HHC----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHH
Q 012234 267 LNN----G----------IQPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISE 329 (468)
Q Consensus 267 ~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 329 (468)
... + -+|.. +++..+.+.|...|++++|+.++++.+.. .|+ +..|..-.+.|-+.|++.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 1 12333 34455667777788888888888877743 454 5667777778888888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-Ccc------h--HHHHHHHHHHcCChHHHHH
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTG------N--YIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~------~--~~~l~~~~~~~g~~~~A~~ 398 (468)
|.+.++... ..-|..+-+..+..+.+.|++++|++++...-+.+.+ ... + ....+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888887764 2335555556667777888888888887766554421 110 1 2345677888888888877
Q ss_pred HHHHHHh
Q 012234 399 VREQMKE 405 (468)
Q Consensus 399 ~~~~m~~ 405 (468)
.|....+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 6655544
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-07 Score=84.96 Aligned_cols=374 Identities=13% Similarity=0.072 Sum_probs=248.1
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 14 AGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
.+....|+++.|+.+|-+.. ... |+|..-|..=..+++..|+++.|++=-.+.++..+. -..-|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai-~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAI-MLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHH-ccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 34567899999999999988 443 567778888888999999999999877777776533 355788888999999999
Q ss_pred HHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHHHHHHHh------hCCC-CC------HhHHHHHHHHHHhC-----
Q 012234 94 DYARALLDEMSDKD---EVSYSAIISGYMVHGFVEKAMDLFQ------VMKR-PG------LSTWNAVISGLVQN----- 152 (468)
Q Consensus 94 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~------~~~~-~~------~~~~~~l~~~~~~~----- 152 (468)
++|+..|.+-.+.+ ...++-+..++... .++.+.|. .... |. ...|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999887643 34555565555111 00111111 0000 00 01233333222111
Q ss_pred -----CChHHHHHHHHHH-----HHCC-------CCC----------------------CHHHHHHHHHHHHccCChhhH
Q 012234 153 -----NRHEAVLDLVREM-----QASG-------VRP----------------------NAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 153 -----g~~~~a~~~~~~m-----~~~~-------~~p----------------------~~~~~~~l~~~~~~~~~~~~a 193 (468)
.+...+...+... ...| ..| -..-...+.++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111111111110 0000 111 123467788888889999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc----------chHHHHHHHHHHcCChHHHHHHH
Q 012234 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----------IIWTAIISAYAAHGDASKAVSLF 263 (468)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~a~~~~ 263 (468)
.+-+....... .+..-++....+|...|.+..+...-....+.+. ..+..+..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99999988876 5666677788889998888887776666554322 12333445677778899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHh-HHHHHHHHHhccCChHHHHHHHHhCC--CC
Q 012234 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE-HYACMVGVLSRARRISEATEFVSKMP--VK 340 (468)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~--~~ 340 (468)
.+.......|+.. .+....+++....+... -+.|... -...-...+.+.|++..|+..|.++. .+
T Consensus 322 ~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 8876654444422 22334445544444333 3344431 12223666788899999999998872 34
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.|...|..-.-+|.+.|.+..|..-.+...+++|+....|..=+.++....+|++|.+.|++..+..
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888889999999999999999999999999999999999999999999999999998877654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=7e-07 Score=82.56 Aligned_cols=257 Identities=9% Similarity=-0.024 Sum_probs=145.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAK 221 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 221 (468)
..+...|++++|.+.+++..+.. +.+...+.. ...+.. .+....+.+.+.. .....|+ ......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 34566777777777777776652 223323321 112222 3333444443333 1111222 2333445566777
Q ss_pred cCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHH
Q 012234 222 TGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI-QPDP--VTFTAVLSACAHSGLVDKAW 295 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~ 295 (468)
.|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888877664 2345667777788888888888888887766421 1222 23456777788888888888
Q ss_pred HHHHHhhhhcCCCCCHhHH-H--HHHHHHhccCChHHHHHH---HHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012234 296 DIFNAMSGQYGIQPSVEHY-A--CMVGVLSRARRISEATEF---VSKM----PVKPSAKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~~~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
.++++........+..... + .++.-+...|....+..+ .... ..............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888875321111111111 1 222333333432222222 1111 1111122223556677788899999998
Q ss_pred HHHHHhhCCC---------CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 366 CDHLFEIEPE---------NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 366 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+...... ........+.++.+.|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8887664211 23345566778889999999999998887654
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=6.1e-08 Score=78.21 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=151.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
...|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|..+.|.+.|++..... +-+....|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 34466778888888888888888877544 577888888889999999999999888752 23456777778888888
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
|.+++|.+.|++........--..+|..+.-+..+.|+++.|.+.|++. ...| .+.+...+.......|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999988876333334568888888888899999999999877 3344 4667777888888899999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++.....+.+...+...++.-.+.|+-+.|-++=..+.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 988888777888888888888888998888776555544
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=5.1e-06 Score=77.09 Aligned_cols=389 Identities=13% Similarity=0.125 Sum_probs=251.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhC------CCCchHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESH------IKMDLWIC 80 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 80 (468)
..|...+......|-++-++.+|++.+ + .++..-+-.+..++..+++++|.+.+...+... .+.+...|
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYL-k----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYL-K----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHH-h----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 457777777788888999999999998 4 333446777888899999999999998876432 24456677
Q ss_pred HHHHHHHHhCCCH---HHHHHHHhhcCCC--C--eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHh
Q 012234 81 NALIGMYAKCGSL---DYARALLDEMSDK--D--EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQ 151 (468)
Q Consensus 81 ~~l~~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~ 151 (468)
+-+-+...++-+. -....+++.+... | ...|.+|.+-|.+.|.+++|.++|++..+ -.+.-|+.+..+|+.
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 7776666655432 2344455655543 3 45799999999999999999999998765 222233333333322
Q ss_pred ----------------CCC------hHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHccCChhhHHHHHH
Q 012234 152 ----------------NNR------HEAVLDLVREMQASGV-----------RPNAVTISSIFSLFSHFSNLKGGKEIHG 198 (468)
Q Consensus 152 ----------------~g~------~~~a~~~~~~m~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 198 (468)
.|+ ++-.+..|+.+...+. +.+..++..-+ -...|+..+....|.
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHH
Confidence 111 2223334444433210 11112222111 123456677777787
Q ss_pred HHHHcCCCC------chhHHHHHHHHHHhcCChHHHHHHHhhccCCCc-------chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 199 YAVKNRYDR------NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-------IIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 199 ~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
++++.- .| -...+..+...|-..|+++.|..+|++..+-+. .+|......-.++.+++.|+++.+.
T Consensus 372 eAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 372 EAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 777631 22 224677889999999999999999999887443 3566666666778899999999887
Q ss_pred HHHCCCC-----------C------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChH
Q 012234 266 MLNNGIQ-----------P------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328 (468)
Q Consensus 266 m~~~~~~-----------p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (468)
.....-. + +...|...++.--..|-++....+++++... .+. ++.........+....-++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ria-TPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHH
Confidence 7542111 1 1223444555555667888888899888854 221 2223223333445666789
Q ss_pred HHHHHHHhCC---CCCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHcCChHHHHHH
Q 012234 329 EATEFVSKMP---VKPS-AKVWGALLYGASI---SGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 329 ~A~~~~~~~~---~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 399 (468)
++.++|++-. ..|+ ...|+..+.-+.+ ....+.|..+|+++++..|+... .|...+..--+.|....|+.+
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999998763 3444 4578877765543 33789999999999998776332 344445555567888888888
Q ss_pred HHHHHh
Q 012234 400 REQMKE 405 (468)
Q Consensus 400 ~~~m~~ 405 (468)
+++.-.
T Consensus 609 yerat~ 614 (835)
T KOG2047|consen 609 YERATS 614 (835)
T ss_pred HHHHHh
Confidence 888643
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=7.8e-09 Score=90.65 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh-HHHHHHHHH
Q 012234 326 RISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW-DEADRVREQ 402 (468)
Q Consensus 326 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 402 (468)
.+.+|..+|+++. ..+++.+.+.+..++...|++++|++++.++.+.+|.++.+...++-+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3455555555542 2344455555555555555555555555555555555555555555555555555 344455555
Q ss_pred HHh
Q 012234 403 MKE 405 (468)
Q Consensus 403 m~~ 405 (468)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=3.1e-08 Score=86.92 Aligned_cols=250 Identities=14% Similarity=0.124 Sum_probs=160.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 012234 117 GYMVHGFVEKAMDLFQVMKR-P--GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 193 (468)
-+.-.|++..++.-.+.-.. + +......+.+++...|+++.++. ++.... .|.......+...+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 34456666666654441111 1 22345556778888888776543 333332 56666655555555444444555
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 194 KEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 194 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
..-++........ .+..+......++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333322 23333333445667789999999888875 55666777889999999999999999999864 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 012234 273 PDPVTFTAVLSACAH----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVW 346 (468)
Q Consensus 273 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~ 346 (468)
.|. +...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| ++.+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 33444444432 3468999999999875 45678888999999999999999999999886 3334 56777
Q ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCc
Q 012234 347 GALLYGASISGDV-ELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 347 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 377 (468)
..++......|+. +.+.+.+.++....|.++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7888888888888 778889999888888765
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=8.9e-07 Score=75.72 Aligned_cols=317 Identities=11% Similarity=0.044 Sum_probs=190.9
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHH---HH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI---IS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~ 116 (468)
.++.-..-+.+.+...|.+..|+.-|...++.++. +-.++-.-...|...|+-..|+.=|.++.+..+..+.+- ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 34555667778888889999999999888775433 223344456788889998888888888876544444433 35
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 012234 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
.+.+.|.+++|..-|+.+.+.++.. +....++.+.-..++-. .....+..+...|+...|...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHH
Confidence 6789999999999999987622210 00001111100000000 111222233344444555555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhc---cCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012234 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF---KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273 (468)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 273 (468)
...+++.. +.+...+..-..+|...|.+..|+.-++.. .+.+...+.-+-..+...|+.+.++...++..+ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 44444432 344445555555555555555555444332 223444444555555566666666665555544 244
Q ss_pred CHHH----HHHH---------HHHHhccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHH
Q 012234 274 DPVT----FTAV---------LSACAHSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLSRARRISEATEFVS 335 (468)
Q Consensus 274 ~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~ 335 (468)
|... |..+ +......+++.+++...+...+. .|. ...+..+..++...+++.+|+....
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4321 1111 12234456777777777777753 444 2234556677778889999998888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 336 KM-PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 336 ~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
++ .+.|+ ..++.--..+|.-..+++.|+.-|+++.+.+++|..+-
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 77 35554 77888888889999999999999999999998876543
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.2e-08 Score=92.89 Aligned_cols=220 Identities=13% Similarity=0.082 Sum_probs=167.2
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
+.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+- |..+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888888776 556777887887888888888888888777663 3456666666788888888888
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHH
Q 012234 261 SLFNEMLNNGIQP--------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332 (468)
Q Consensus 261 ~~~~~m~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 332 (468)
..++.-+....+- +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|.-.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 8887765432110 0000000 12222333455666666666555656788899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 333 FVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 333 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.|+.+ ..+| |..+||.|...++...+.++|+..|.+++++.|.-.++...|+-.|...|.+++|.+.|=..+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99987 4566 67899999999999999999999999999999999999999999999999999999988766553
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=4.4e-06 Score=79.13 Aligned_cols=366 Identities=14% Similarity=0.103 Sum_probs=235.7
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc-cCChHHHHHHHHHHHHhC----CCCchHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGMEVHNFVIESH----IKMDLWICN 81 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 81 (468)
..|+.+...+...|.-..|+.+++.-.....-+++...+...-+.|.+ .+..++++++-.+++... -......|.
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l 437 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYL 437 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 458888888999999999999999876333223344455555556654 477788877777776621 122344555
Q ss_pred HHHHHHHhCC-----------CHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHhHHH
Q 012234 82 ALIGMYAKCG-----------SLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWN 143 (468)
Q Consensus 82 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~ 143 (468)
.+.-+|...- ...++++.+++..+. |+.....+.--|+..++++.|.+..++..+ .+...|.
T Consensus 438 ~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 438 FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 5555554321 244677778877543 454444555567788999999988887654 5677899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHH--------------------
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVK-------------------- 202 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 202 (468)
.|.-.+...+++.+|+.+.+..... .|+ ......-+..-...++.+++......+..
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l 595 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL 595 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence 9999999999999999999887654 121 11111111111223444444333222221
Q ss_pred -cCC-------CCchhHHHHHHHHHHh---cCChHHHHHHHhhccCCCc------chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 203 -NRY-------DRNIYVATAIIDTYAK---TGFLHGAQRVFDRFKGRSL------IIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 203 -~~~-------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
.|. ...+.++..+...... .-..+..+..+.....++. ..|......+...++.++|...+.+
T Consensus 596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 010 0111222222211111 0111111111111111221 2466667788899999999988888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHH--HHHhC-CCCC
Q 012234 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATE--FVSKM-PVKP 341 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~-~~~~ 341 (468)
.... .+.....|......+...|..++|.+.|.... .+.| ++....++...+.+.|+..-|.+ ++..+ ++.|
T Consensus 676 a~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 676 ASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 7664 34456677777778888999999999999887 4566 46778899999999998887777 88777 4555
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 342 -SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 342 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
+...|..+...+...|+.+.|-+.|..+.++.+.+|.
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6899999999999999999999999999999766654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=4.4e-07 Score=85.10 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=77.3
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (468)
.+......+.+|..+++.+...+. ....|..+...|...|+++.|.++|-+.. .++-.|..|.+.|+|+.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 333444555555555555444321 12233444555555555555555554332 23444555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 012234 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 341 (468)
+-.+.. |.......|..-..-+-+.|++.+|++++-.+. .|+. -|.+|-+.|..++.+++..+--...
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhh
Confidence 543322 222223334333444445555555555543322 2332 2344555555555555554441111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
-..|...+..-+-..|+.+.|++.|-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 123444445555555555555555443
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.5e-07 Score=75.97 Aligned_cols=302 Identities=14% Similarity=0.122 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHH-HHHHHHhCC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNA-VISGLVQNN 153 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~g 153 (468)
+.+.+..+.+..+++.|++++..-.++ +....+.|..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455666667778888888888766654 344567777788888888888888888765 44444432 235566778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 154 RHEAVLDLVREMQASGVRPNAVTISSIFS--LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 154 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.+..|+++...|... |+-..-..-+. ...+.+++..++.+.++.-.. .+..+.+.......+.|+++.|..-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888888888777643 22222111222 233556677776666655432 2333444445555667777777777
Q ss_pred HhhccCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCCHHHHHHHHHHhh
Q 012234 232 FDRFKGR----SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA-----VLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 232 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
|+...+- ....|+..+ ++.+.|+++.|+++..+++++|++..+. ++. .+++ ...|+. ..+....
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHHH-
Confidence 7766552 223444433 3445567777777777777776542111 100 0000 000000 0000000
Q ss_pred hhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP----VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
-...+|.-...+.+.|+++.|.+.+-.|+ ...|+.|...+.-.- ..+++....+-+.-+++.+|-.+.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 01223333344567788888888888884 334666665543221 234555666666666777777777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+|..+.-.|++..-++-|..++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888877777776543
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4e-06 Score=72.19 Aligned_cols=348 Identities=10% Similarity=0.065 Sum_probs=190.7
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHH
Q 012234 49 LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVE 125 (468)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 125 (468)
+.-+...+|+..|..+++.-...+-+....+---+..++.+.|++++|...+.-+.+ ++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 445566789999999998776554333333444567788899999999999998765 45667778888888889999
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHhCCC------------------------------hHHHHHHHHHHHHCCCCCCHH
Q 012234 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNR------------------------------HEAVLDLVREMQASGVRPNAV 175 (468)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~------------------------------~~~a~~~~~~m~~~~~~p~~~ 175 (468)
+|..+-.+..+ ++-.-..|+....+.++ +.+|++++...+.. .|+-.
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 99998887754 11112222233333333 45555555555443 23333
Q ss_pred HHHHH-HHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHH--HHHHHhhccC----------CCc
Q 012234 176 TISSI-FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT--GFLHG--AQRVFDRFKG----------RSL 240 (468)
Q Consensus 176 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~--a~~~~~~~~~----------~~~ 240 (468)
..+.- .-+|.+..-++-+.+++.-..+.- +.++...|.......+. |+..+ -.++-+...+ .|.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 33322 233444444555555554444331 22222222222222221 22111 1122222211 011
Q ss_pred ---------------------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCCHHHH
Q 012234 241 ---------------------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-----AHSGLVDKA 294 (468)
Q Consensus 241 ---------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a 294 (468)
.+.-.++--|.+++++.+|..+.+++.- ..|-......++.+- .......-|
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 1122334445666777777766655321 122222222222211 111224455
Q ss_pred HHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 295 WDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
.+.|.-.-+. +..-| ...-.++...+.-..++++++.+++.++ ...|...-..+..+.+..|++.+|+++|-++..
T Consensus 343 qqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 343 QQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 5555544332 33322 2223344455555566777777777664 223333334577888899999999999988777
Q ss_pred hCCCCcchH-HHHHHHHHHcCChHHHHHHHHHH
Q 012234 372 IEPENTGNY-IIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 372 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
.+..|..+| ..|+++|.+.|+.+-|+.++-++
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 664455555 46789999999999998876544
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=5.4e-06 Score=86.81 Aligned_cols=324 Identities=13% Similarity=0.064 Sum_probs=211.4
Q ss_pred HHHHhCCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----C----C--H--hHHHHHHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----P----G--L--STWNAVISG 148 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~ 148 (468)
......|+++.+...++.+.. .++.........+...|++++|...+..... . + . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556777777777777632 2343344455556778999998888876532 1 1 1 122233455
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHHHHcCCC---C--chhHHHHHHHHH
Q 012234 149 LVQNNRHEAVLDLVREMQASGVRPNA----VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD---R--NIYVATAIIDTY 219 (468)
Q Consensus 149 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~ 219 (468)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+......... + .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999998763111121 23445566678899999999999887753211 1 123445667778
Q ss_pred HhcCChHHHHHHHhhccC-------CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKG-------RS----LIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPD--PVTFTAVLSA 284 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~ 284 (468)
...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998876543 11 122444556677789999999999887552 11122 3344456667
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHH-----HHHHHHHhccCChHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHY-----ACMVGVLSRARRISEATEFVSKMPVK--PSA----KVWGALLYGA 353 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~ 353 (468)
+...|+.+.|...++..............+ ...+..+...|+.+.|..++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999988875421111111111 11224445689999999998776411 111 1234567778
Q ss_pred HHcCChHHHHHHHHHHHhhCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 354 SISGDVELGKFVCDHLFEIEP------ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
...|+.++|...++++..... ....++..++.++.+.|+.++|...+.+..+..-
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999999887521 1234677888999999999999999999987553
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.5e-05 Score=76.14 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=86.0
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-CCeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
...|.+++|..+|.+..+.+ .|=..|...|.+++|.++-+.-.. .=..||.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 34455555555555544321 222334455566666555443221 11234555555555556666666666
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhH
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
++...+--..+..|. ..+.....+.+. ..|...|.....-+...|+.+.|..+|..+..
T Consensus 882 EK~~~hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred HhcCChHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 554322111111110 011111111111 12334455555555666666666666665553
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
|-++++..|-.|+.++|-++-++- .|..+...+...|-..|++.+|...|.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 223455555566666665554432 23344445556666666666666666554
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=5.3e-06 Score=76.72 Aligned_cols=195 Identities=10% Similarity=0.015 Sum_probs=108.9
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcch-HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH---
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVT-VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA--- 82 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 82 (468)
..|..+...+...|+.+.+.+.+....+.....++... .......+...|+++.|.+.+++..+..+. +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 44666677777778888877777776533221222211 112223456678899999999988887543 4434332
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCee---hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEV---SYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 156 (468)
........+..+.+.+.+......++. ....+...+...|++++|...+++..+ .+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111122245555555555542222222 223344556667777777777776654 23445666666777777777
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 157 AVLDLVREMQASGV-RPNA--VTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 157 ~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
+|...+++...... .|+. ..+..+...+...|++++|..+++.+..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777776655421 1222 1233455566666677777666666543
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=9.2e-06 Score=79.18 Aligned_cols=209 Identities=14% Similarity=0.195 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC--CCchhHHHHH---------------------------HHHHHhcC
Q 012234 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAI---------------------------IDTYAKTG 223 (468)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l---------------------------~~~~~~~g 223 (468)
|+...+..++++...+-..+-.+++++++-.+. ..+....+.| .......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 555666777888888888888888877764321 1112222222 22333445
Q ss_pred ChHHHHHHHhhccC-------------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 224 FLHGAQRVFDRFKG-------------------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 224 ~~~~a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
-+++|..+|++..- ..+..|..+..+-.+.|...+|++-|-+. -|+..|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 56777777775432 13467999999999999999999877542 367789
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 358 (468)
..+++...+.|.+++-.+++.-.+++ .-+|.. -+.|+-+|++.++..+.++++. .|+......+.+-|...|.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhh
Confidence 99999999999999999998877765 445544 4578999999999988877764 5777777888899999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
++.|.-+|. +.+.|..|+..+...|++..|..--++
T Consensus 1210 y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1210 YEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999988886 345677788888888887777654443
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=3e-06 Score=79.78 Aligned_cols=168 Identities=15% Similarity=0.140 Sum_probs=121.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
|.+-.....|.+|+.+++.++ ... .-+..|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniq-dqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQ-DQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhh-hhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 344456778899999999887 432 34556778888899999999999988543 235678899999999
Q ss_pred HHHHHHHHhhcCCCC--eehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 93 LDYARALLDEMSDKD--EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 93 ~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
++.|.++-++...|. ...|.+-..-+-+.|++.+|.+++-.+..|+.. |..|-+.|..+..+++..+-...
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChh--
Confidence 999999999887763 445666667778899999999999888887653 66788888888888877654221
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 200 (468)
.-..|...+..-+...|++..|...|-+.
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 11234445555666666666666555433
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.5e-06 Score=82.71 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=212.7
Q ss_pred CcchHHHHHHH--hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-----------CC
Q 012234 41 DGVTVVSVLQA--CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-----------KD 107 (468)
Q Consensus 41 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~ 107 (468)
|..|-..++.. |...|+.+.|.+-.+.+. +..+|..+.++|.+..++|-|.-.+-.|.. .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45555555543 566788888877665543 456788899999999888888877777753 12
Q ss_pred e-ehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 108 E-VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 108 ~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
. ..-..........|.+++|..+|++..+ |..|=..|...|.+++|+++-+.=-+-. =..||..-..-+..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEA 870 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHh
Confidence 2 3333333445677889999999988765 5555567778899999988765432211 22355555666666
Q ss_pred cCChhhHHHHHHHHHHc----------C---------CCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKN----------R---------YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 247 (468)
.++.+.|.+.|++.... . -..+...|......+...|+.+.|+.+|..... |..++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhhe
Confidence 77777777766643211 1 122344555555566677888888888876554 67777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc-CCC--CCHhHHHHHHHHHhc-
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-GIQ--PSVEHYACMVGVLSR- 323 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--p~~~~~~~l~~~~~~- 323 (468)
...|-+|+.++|..+-++- -|......+.+.|...|++.+|..+|.+...-. .+. .....-..|...+..
T Consensus 946 rI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 7788889999988877652 255556668889999999999999988765210 000 000011122222222
Q ss_pred -cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCCC-CcchHHHHHHHHHHcC
Q 012234 324 -ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL----------FEIEPE-NTGNYIIMANLYSQAG 391 (468)
Q Consensus 324 -~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~-~~~~~~~l~~~~~~~g 391 (468)
..+.-.|-.+|++.+.. +...+..|.+.|.+.+|.++.-+- ..++|. ||.....-++.+....
T Consensus 1020 ~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred CchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 23444556677766422 233445677888888887654322 122443 6777888888888999
Q ss_pred ChHHHHHHHHHHHh
Q 012234 392 RWDEADRVREQMKE 405 (468)
Q Consensus 392 ~~~~A~~~~~~m~~ 405 (468)
++++|..++...++
T Consensus 1095 qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888765544
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.7e-05 Score=75.18 Aligned_cols=293 Identities=13% Similarity=0.131 Sum_probs=158.7
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcch-----HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVT-----VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (468)
|+..-..-+.++...+-+.+-+++++++. - .|++++ -+.++-...+ -+..++.+..+++-.-+. |+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIv-L---~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~--- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIV-L---DNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD--- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHh-c---CCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh---
Confidence 34444555677777777777788887776 2 233332 2222222222 233444444444432221 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC-------------------------CCeehHHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSD-------------------------KDEVSYSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
+...+...+-+++|..+|+...- ..+..|+.+..+-.+.|.+.+|++-|-+.
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 12222333344444444443321 13345666666666666666666665543
Q ss_pred CCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHH
Q 012234 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214 (468)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 214 (468)
.|+..|..++....+.|.+++-.+++...++..-.|... +.++-+|++.+++.+.++++. .|+..-...
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQ 1199 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHH
Confidence 344556666666666666666666665555554444433 245556666666655554432 355555555
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 294 (468)
+.+-+...|.++.|.-+|. ++..|..+...+...|++..|...-++. .+..||..+-.+|...+.+.-|
T Consensus 1200 vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 5566666666666665554 3345777778888888888877665543 2456676666666665544322
Q ss_pred HHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
++..- ++.....-..-|+..|...|-+++.+.+++..
T Consensus 1269 -----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1269 -----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred -----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 22211 22234444556677777777777777776654
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=4.4e-07 Score=75.24 Aligned_cols=148 Identities=9% Similarity=0.094 Sum_probs=112.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3467777777776444332221 11 0122356677777777777753 35578889999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 327 ISEATEFVSKM-PVKP-SAKVWGALLYGA-SISGD--VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 327 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++.+.+|.++.++..++..+...|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 3444 677888888764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 012234 402 QMKESGL 408 (468)
Q Consensus 402 ~m~~~~~ 408 (468)
++.+..-
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=4.8e-07 Score=82.68 Aligned_cols=248 Identities=14% Similarity=0.109 Sum_probs=180.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (468)
.-+.+.|+..+|.-.|+..+..+ +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888887764 4456678888888888888888888888888775 456667777888888888888
Q ss_pred HHHHHHhhccCCCcc-hHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 012234 227 GAQRVFDRFKGRSLI-IWTAII---------SAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAW 295 (468)
Q Consensus 227 ~a~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 295 (468)
.|.+.|+......+. .|.... +.+..........++|-++. ..+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 898888876432110 000000 11111222344555555554 4554577777777887888899999999
Q ss_pred HHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 296 DIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 296 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
..|+.+. .++| |...||.|...++...+.++|+..|++. ..+|. +.+...|.-.|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999998 4466 6789999999999999999999999988 47776 567888999999999999999999888876
Q ss_pred CCC----------CcchHHHHHHHHHHcCChHHHHHH
Q 012234 373 EPE----------NTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 373 ~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
.+. +..+|..|=.++.-.++.|-+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 432 123666666677777777655543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=5.5e-06 Score=86.75 Aligned_cols=323 Identities=9% Similarity=-0.044 Sum_probs=205.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CC---e-----ehHHHHHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD----KD---E-----VSYSAIISGYM 119 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~ 119 (468)
....|++..+..+++.+.......+..........+...|++++|...+..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345577776666665542111112222334455566788999999888876532 11 1 11122334556
Q ss_pred hcCCHHHHHHHHhhCCC----CCH----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHc
Q 012234 120 VHGFVEKAMDLFQVMKR----PGL----STWNAVISGLVQNNRHEAVLDLVREMQASGV---RP--NAVTISSIFSLFSH 186 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~ 186 (468)
..|++++|...++.... .+. ...+.+...+...|++++|...+++.....- .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 88999999998887543 221 2456666778889999999999988864311 11 12344556677888
Q ss_pred cCChhhHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCChHHHHHHHhhccC------C--CcchHHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKN----RYD--R-NIYVATAIIDTYAKTGFLHGAQRVFDRFKG------R--SLIIWTAIISAYA 251 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~ 251 (468)
.|+++.|...+.+.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998877653 211 1 123344556677788999999988887643 1 1234445666788
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC---HhHHHHHHHHHh
Q 012234 252 AHGDASKAVSLFNEMLNNG--IQPDPV--TF--TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS---VEHYACMVGVLS 322 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 322 (468)
..|+++.|...+.+..... ...... .. ...+..+...|+.+.|...+...... ..... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHH
Confidence 8999999999998875421 111110 10 11223445578999999998776532 11111 111345667788
Q ss_pred ccCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 323 RARRISEATEFVSKMP-------VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
..|+.++|...+++.. ..+ ...+...+..++...|+.++|...+.++.+...+
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9999999999988762 111 1345666777889999999999999999998643
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=6.1e-07 Score=77.54 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=121.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HHHH
Q 012234 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PD-PVTF 278 (468)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~ 278 (468)
.....+..+...+...|++++|...|+++...++ .++..+..++...|++++|...++++.+.... |. ..++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445666677778888888888888887765222 35566777888888888888888888764221 11 1234
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhhhhcCCCCCH-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHH
Q 012234 279 TAVLSACAHS--------GLVDKAWDIFNAMSGQYGIQPSV-EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349 (468)
Q Consensus 279 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 349 (468)
..+..++... |+.+.|.+.|+++... .|+. ..+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444455443 6777888888887754 3432 22222211100 00000 0112245
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...+...|++.+|+..++++.+..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667889999999999999999987764 468899999999999999999999888664
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=1.2e-06 Score=87.88 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=167.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 277 (468)
+.....|-..|......++.++|++++++.... -...|.+++..-...|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334556777888888899999999999887652 2357888888777888888899999999874 212456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP---SAKVWGALLYGA 353 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~ 353 (468)
|..|...|.+.+.+++|.++++.|.++++ -....|...+..+.+.++-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999766 55678999999999999999999999876 2233 345556667777
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
.+.|+.+++..+|+..+...|.-...|..+++.-.++|+.+.++.+|++.+..++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999998864
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=5.4e-06 Score=80.68 Aligned_cols=372 Identities=12% Similarity=0.033 Sum_probs=229.6
Q ss_pred ChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 012234 21 FYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99 (468)
Q Consensus 21 ~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 99 (468)
+...|+..|=+.. +. .|+ ...|..+...|+...+...|.+.|+...+.+.. +........+.|+...+++.|..+
T Consensus 473 ~~~~al~ali~al-rl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRAL-RL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHH-hc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 3666777776655 32 233 456888888888888889999999999887643 777788899999999999999998
Q ss_pred HhhcCCCC-----eehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 012234 100 LDEMSDKD-----EVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171 (468)
Q Consensus 100 ~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 171 (468)
.-...+.+ ...|....-.|.+.++...|+.-|+...+ .|...|..++.+|...|++..|+++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 55544432 22344555567788999999999988876 34557888899999999999999999888764 5
Q ss_pred CCHHHHHH--HHHHHHccCChhhHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCChHHHHHHHhhccC------
Q 012234 172 PNAVTISS--IFSLFSHFSNLKGGKEIHGYAVKNR------YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------ 237 (468)
Q Consensus 172 p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 237 (468)
|+.. |.. ....-+..|.+.++...+..+.... ...-..++-.+...+.-.|-..+|..++++-.+
T Consensus 627 P~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5542 322 2233467888888888888776532 111122222233333333433344444433221
Q ss_pred -----CCcchHHHHHHHHH---HcC--ChH-HHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHHH
Q 012234 238 -----RSLIIWTAIISAYA---AHG--DAS-KAVSLF-NEMLNNGIQP--------------------DPVTFTAVLSAC 285 (468)
Q Consensus 238 -----~~~~~~~~l~~~~~---~~g--~~~-~a~~~~-~~m~~~~~~p--------------------~~~~~~~l~~~~ 285 (468)
.+...|..+..+|. +.. -+. ....++ .+....+.-| +..+|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 12222332222211 110 000 000111 1111111111 122222222222
Q ss_pred hc-------c-CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 012234 286 AH-------S-GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASI 355 (468)
Q Consensus 286 ~~-------~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 355 (468)
.+ . .+...|...+++.++. ...+..+|+.|.-. ...|.+.-|...|-+.. .+....+|..+...+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 21 1 1234566666666642 23345566665544 45566666666554442 33356788888888889
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
..+++.|...|.+...+.|.|...|...+.+....|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888888888988888888765
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.4e-05 Score=70.33 Aligned_cols=370 Identities=12% Similarity=0.065 Sum_probs=240.7
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
+||.+.|..=..+|...|++++|++=-.+-. + +.|+ ...|.-...++.-.|++++|...|.+-++..+. +...++
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~-~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~ 108 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTR-R--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKT 108 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHH-h--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHH
Confidence 4578889999999999999999988777665 3 3466 567899999999999999999999998887643 777788
Q ss_pred HHHHHHHhCCCHHHHHHHH------hhcCC-C------CeehHHHHHHHH----------HhcCCHHHHHHHHhhCC---
Q 012234 82 ALIGMYAKCGSLDYARALL------DEMSD-K------DEVSYSAIISGY----------MVHGFVEKAMDLFQVMK--- 135 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~------~~~~~-~------~~~~~~~li~~~----------~~~~~~~~A~~~~~~~~--- 135 (468)
.+..++.... .+.+.| ..+.. | ....|..++..+ .+..++..|.-.+....
T Consensus 109 gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 109 GLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred hHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 8887772110 011111 11110 0 111233332221 11112222222222111
Q ss_pred -------------CC---------CH-------------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012234 136 -------------RP---------GL-------------STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180 (468)
Q Consensus 136 -------------~~---------~~-------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 180 (468)
.| .+ .-...+.+...+..+++.|++-+....+.. .+..-++..
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~ 263 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNI 263 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHH
Confidence 01 00 125567788888999999999999988764 444455667
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcC
Q 012234 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRN------IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254 (468)
Q Consensus 181 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (468)
..++...|....+........+.|...- ...+..+..+|.+.++++.++..|.+....... -....+..
T Consensus 264 aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk 338 (539)
T KOG0548|consen 264 AAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLK 338 (539)
T ss_pred HHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHH
Confidence 7788888888888877777766653211 112222445677788899999999885532111 11122233
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDP-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 333 (468)
..+++........- +.|.. .-...-...+.+.|++..|...|.++++. .+.|...|..-.-+|.+.|.+..|++=
T Consensus 339 ~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 339 EAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555544444332 23332 22222356678899999999999999875 244788899999999999999999887
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 334 VSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 334 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
.+... ..| ....|..-..++....+++.|.+.|.+.++.+|.+......+.+++...
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 66552 344 3556666677777788999999999999999999888777777777653
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=2.3e-07 Score=72.74 Aligned_cols=94 Identities=11% Similarity=-0.088 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+..+...+...|++++|...|+... ..| +...|..+..++...|++++|+..|+++.+.+|.++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4445666677777777777777652 333 56677777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhCC
Q 012234 392 RWDEADRVREQMKESG 407 (468)
Q Consensus 392 ~~~~A~~~~~~m~~~~ 407 (468)
++++|+..++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777776643
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.75 E-value=0.00017 Score=70.01 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=130.1
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHH--hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA--CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (468)
...+++.+|+.......++. |+.. |..++.+ +.+.|..++|..+++.....+.. |..|...+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 44678899999998888442 5543 3344444 46789999999888887766655 8888888999999999999
Q ss_pred HHHHHHhhcCCCCee--hHHHHHHHHHhcCCHHH----HHHHHhhCCCCCHhHHHHHHHHHHhC-CChH---------HH
Q 012234 95 YARALLDEMSDKDEV--SYSAIISGYMVHGFVEK----AMDLFQVMKRPGLSTWNAVISGLVQN-NRHE---------AV 158 (468)
Q Consensus 95 ~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~---------~a 158 (468)
+|..+|++..+.++. ....+..+|++.+.+.+ |+++++..++. ...+-++++...+. ..++ -|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999998875444 34445556777666544 77777766543 33333344444332 1121 23
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHH-HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012234 159 LDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236 (468)
Q Consensus 159 ~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (468)
.+.++.+.+.+ -.-+..-...-...+...|.+++|.+++ ....+.-...+...-+.-++.+...+++++..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444432 1111222222233445667777777777 333333333344444555666666777766666655554
Q ss_pred C
Q 012234 237 G 237 (468)
Q Consensus 237 ~ 237 (468)
.
T Consensus 254 ~ 254 (932)
T KOG2053|consen 254 E 254 (932)
T ss_pred H
Confidence 4
No 111
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=5.9e-06 Score=73.65 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=104.4
Q ss_pred hHHHHHHHhhccCC---CcchHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 225 LHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDA--SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 225 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
+++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+.. +-|...|....-++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455544444332 223344333333344432 45566666666543 2245566656566666666777777777
Q ss_pred HhhhhcCCCCCHhHHHHHHHHHhcc---CC----hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHH
Q 012234 300 AMSGQYGIQPSVEHYACMVGVLSRA---RR----ISEATEFVSKM-PVKP-SAKVWGALLYGASIS----GDVELGKFVC 366 (468)
Q Consensus 300 ~~~~~~~~~p~~~~~~~l~~~~~~~---~~----~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~ 366 (468)
++.+. . ..+...|+.....+.+. |. .++.+++..++ ...| |...|+.+...+... +...+|.+++
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66643 1 22344454444433332 22 23455555333 3333 566777766666652 3456688888
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcC------------------ChHHHHHHHHHHHhCCCCCCCceeE
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAG------------------RWDEADRVREQMKESGLAKIPGRSW 416 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~~~~~~~~~~~ 416 (468)
.++...+|.++.++..|++.|+... ..++|.++++.+. ...|.....|
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 8888888888888889999988642 2367888888873 3444433334
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=1.8e-08 Score=56.28 Aligned_cols=31 Identities=39% Similarity=0.728 Sum_probs=29.0
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhh
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREML 33 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 33 (468)
.||+.+||+||.+|++.|++++|.++|++|.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6999999999999999999999999999984
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=6.5e-06 Score=82.84 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=150.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--------CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-HhHHHHH
Q 012234 76 DLWICNALIGMYAKCGSLDYARALLDEMSDK--------DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-PG-LSTWNAV 145 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~l 145 (468)
+...|-..|......++.++|.+++++.... -...|.++++.-...|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445667777777788888888888776642 234677777777777777777788887765 33 3467778
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCC
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 224 (468)
...|.+.+++++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++..+.+.-.+ -........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88888888888888888888765 2345556777777777888888888888777765322 234455556666677788
Q ss_pred hHHHHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHH
Q 012234 225 LHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP--VTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 225 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a 294 (468)
.+.+..+|+...... ...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 888888888776533 357888888888888888888888888877766643 3455555544445554433
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=3.7e-06 Score=82.64 Aligned_cols=158 Identities=8% Similarity=0.052 Sum_probs=107.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYAC 316 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 316 (468)
++..+-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|...+++.... .| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 3566777777888888888888888887774 555 445666777778888888888888887742 44 4555666
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChH
Q 012234 317 MVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (468)
+..++.+.|++++|..+|+++. ..| +..++..+..++...|+.++|...|+++.+...+-...|+.++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 7777788888888888888774 333 3677777888888888888888888888877644444444332 2233
Q ss_pred HHHHHHHHHHhCC
Q 012234 395 EADRVREQMKESG 407 (468)
Q Consensus 395 ~A~~~~~~m~~~~ 407 (468)
.-..+++++.-.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (694)
T PRK15179 234 ADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHcCccc
Confidence 3344555554433
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=1.9e-06 Score=67.61 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=99.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--
Q 012234 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-- 338 (468)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 338 (468)
.++++..+. .|+. +..+...+...|++++|...|+.+... -+.+...+..+..++.+.|++++|+..|++..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455665553 4443 445677788899999999999998843 23367888889999999999999999999883
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+.+...+..+..++...|+.++|+..|+++.+..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 344688999999999999999999999999999999999988887776543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.6e-05 Score=75.03 Aligned_cols=189 Identities=17% Similarity=0.287 Sum_probs=156.0
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
.+|-...-..+...+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+|++..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34555566678889999999999999999754 578889999999999999999888777 37899999999888
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 362 (468)
.....-+++|..+.+....+ .-..+.....+.++++++.+.|+.. .+.| ...+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 87777788888888765532 2222333345578999999999765 4444 578899999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
...|...+...|++...|+.+..+|.+.|+-.+|...+++..+...
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999988874
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=3e-05 Score=75.71 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=101.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACM 317 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 317 (468)
+...|+.|.-. ...|++.-|...|-+-... -+....+|..+.-.+....+++.|...|...+ .+.| +...|...
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGE 890 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHH
Confidence 33445544433 4445555555555444333 12244556666666677788888888888877 3455 45556555
Q ss_pred HHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHH----------HHHHHHHHHhhCCCCcchH
Q 012234 318 VGVLSRARRISEATEFVSKM-------PVKPSAKVWGALLYGASISGDVEL----------GKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~----------a~~~~~~~~~~~~~~~~~~ 380 (468)
.......|+.-++..+|..- +.-|+...|..........|+.++ |--.+++.....|+...+|
T Consensus 891 Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy 970 (1238)
T KOG1127|consen 891 ALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAY 970 (1238)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHH
Confidence 55555677888888877652 123444444444444455665554 3344555666689999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 381 IIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
...+...-+.+.+++|.++..+++.
T Consensus 971 ~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 971 AANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888776643
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=5.7e-08 Score=54.24 Aligned_cols=32 Identities=41% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 012234 72 HIKMDLWICNALIGMYAKCGSLDYARALLDEM 103 (468)
Q Consensus 72 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (468)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=8.5e-05 Score=61.77 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=79.9
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCC
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----SGL 290 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~ 290 (468)
-...|+..|++++|++..... .+..+...=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 344455666666666665552 22222222233444555566666666666542 244455545444433 344
Q ss_pred HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHH-HHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM--PVKPSAKVWGALLYGASISGDVEL-GKFVCD 367 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 367 (468)
+..|.-+|+++.. ...|+..+.+....++...|++++|..+++.. +...++.+...++......|...+ ..+.+.
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5666666666653 34566666666666666666666666666655 223345555555554444554433 334445
Q ss_pred HHHhhCCCC
Q 012234 368 HLFEIEPEN 376 (468)
Q Consensus 368 ~~~~~~~~~ 376 (468)
+.+...|.+
T Consensus 267 QLk~~~p~h 275 (299)
T KOG3081|consen 267 QLKLSHPEH 275 (299)
T ss_pred HHHhcCCcc
Confidence 555555544
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=6.8e-06 Score=68.09 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=112.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (468)
..+...+...|+-+....+....... .+.|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455666677777777666664332 233444555577777788888888888888774 446677888888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 324 ARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 324 ~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
.|+++.|..-|.+. ...| ++...+.+...+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888777766 2333 567778888888888888888888888887777788888888888888888888877643
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=5.1e-06 Score=78.28 Aligned_cols=212 Identities=9% Similarity=0.007 Sum_probs=170.6
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCC
Q 012234 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 255 (468)
..+...+.+.|-...|..+++... .+..++.+|+..|+..+|..+..+..+ +++..|..+........-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 445667788888899999888654 456689999999999999998877655 566788888888777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFV 334 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~ 334 (468)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .| ...+|-.+..+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88999888765332 1122223334578999999999887643 33 5678888888888999999999988
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 335 SKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 335 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
... ...| +...||.+-.+|.+.|+-.+|...+.++.+.+-.+..+|...+-...+.|.+++|++.+.++.+...
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 776 3556 4789999999999999999999999999999988899999999999999999999999999977544
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=7.3e-06 Score=70.80 Aligned_cols=182 Identities=12% Similarity=-0.023 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cc---hH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-R-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LI---IW 243 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~---~~ 243 (468)
.....+..+...+...|+++.|...++.+.+.... | ....+..+..++...|++++|...++++.+.+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777888899999999999999999886422 1 12466778899999999999999999987532 22 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 244 TAIISAYAAH--------GDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 244 ~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
..+..++... |++++|.+.|+++... .|+.. ....+... ..+... . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~----~-~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR----L-AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH----H-HHHH
Confidence 5555666654 7889999999999875 44432 22111111 111000 0 0111
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP-V---KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
..+...|.+.|++++|+..+++.. . .| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 245567888899999998888772 2 22 356888888999999999999998888776655
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1.8e-05 Score=65.62 Aligned_cols=154 Identities=10% Similarity=0.144 Sum_probs=115.3
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 294 (468)
-+..|...|+++.+....+.+..+. ..+...++.+++...+++..... +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777788777655543332221 01123566778888888877653 55778899999999999999999
Q ss_pred HHHHHHhhhhcCCCC-CHhHHHHHHHH-HhccCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 295 WDIFNAMSGQYGIQP-SVEHYACMVGV-LSRARR--ISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
...|++..+. .| +...+..+..+ +...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998853 44 66777777776 467777 599999999883 444 678889999999999999999999999
Q ss_pred HHhhCCCCcchH
Q 012234 369 LFEIEPENTGNY 380 (468)
Q Consensus 369 ~~~~~~~~~~~~ 380 (468)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998876544
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.00071 Score=62.13 Aligned_cols=384 Identities=13% Similarity=0.152 Sum_probs=224.7
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
+-|..+|+.||+-+..+ -++++.+.++++. . ..+-....|..-|..-....+++.+.++|.+.+..-. +...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~-~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLV-N-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHh-c-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 34788999999987766 8999999999998 3 2455677889999999999999999999999987654 4555555
Q ss_pred HHHHHHh-CCCHHHHH----HHHhhcC-----C-CCeehHHHHHHH---------HHhcCCHHHHHHHHhhCCC-C--CH
Q 012234 83 LIGMYAK-CGSLDYAR----ALLDEMS-----D-KDEVSYSAIISG---------YMVHGFVEKAMDLFQVMKR-P--GL 139 (468)
Q Consensus 83 l~~~~~~-~g~~~~A~----~~~~~~~-----~-~~~~~~~~li~~---------~~~~~~~~~A~~~~~~~~~-~--~~ 139 (468)
-++--.+ .|+...+. +.|+-.. + .+...|+..+.- +..+.+++...+++.++.. | |.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5543222 33333321 1222111 1 244455555532 4445566777788877764 1 11
Q ss_pred -------hHHHHHHHH-------HHhCCChHHHHHHHHHHHH--CCC-------CCCH----------------------
Q 012234 140 -------STWNAVISG-------LVQNNRHEAVLDLVREMQA--SGV-------RPNA---------------------- 174 (468)
Q Consensus 140 -------~~~~~l~~~-------~~~~g~~~~a~~~~~~m~~--~~~-------~p~~---------------------- 174 (468)
..|-.=|+. --+...+-.|.++++++.. .|. +|..
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 111111110 1112233344444444432 111 1100
Q ss_pred --------------HHHHHHH---------------------HHHHccCC-------hhhHHHHHHHHHHcCCCCchhHH
Q 012234 175 --------------VTISSIF---------------------SLFSHFSN-------LKGGKEIHGYAVKNRYDRNIYVA 212 (468)
Q Consensus 175 --------------~~~~~l~---------------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 212 (468)
.+|...+ ..+...|+ .+++..+++.....-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0010000 01111111 12233333333322111222222
Q ss_pred HHHHHHHHhc---CChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 012234 213 TAIIDTYAKT---GFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSA 284 (468)
Q Consensus 213 ~~l~~~~~~~---g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 284 (468)
..+...--.. ...+.....++++.. .-..+|...+..-.+......|..+|.+..+.+..+ .....++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 2222111111 123344444444433 122478888888888888999999999999887777 67778888887
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCh
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPS--AKVWGALLYGASISGDV 359 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~ 359 (468)
+|. ++.+-|.++|+.-.+.+|- ++..-...++-+...++-..+..+|++.. ..|+ ..+|..++.--..-|+.
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 775 7889999999988776543 33445667778888899999999999883 2333 57899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCc----chHHHHHHHHHHcCChH
Q 012234 360 ELGKFVCDHLFEIEPENT----GNYIIMANLYSQAGRWD 394 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 394 (468)
..+.++-++.....|.+. ..-..+.+-|.-.+.+.
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 999998888877665221 12233445555455443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.1e-05 Score=66.80 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHH
Q 012234 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGAL 349 (468)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l 349 (468)
.|+......+-..+...|+-+....+...... ....+......++....+.|++..|+..+++.. .++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433225566777788888888888777653 334466677778999999999999999999983 56789999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
..+|.+.|+++.|...|.++.++.|.++...+.|+..|.-.|+++.|..++......+-
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999988876654
No 126
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.00018 Score=64.28 Aligned_cols=226 Identities=11% Similarity=0.083 Sum_probs=132.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNA-VTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
.+-..+...++.++|+.+..++++. .|+. ..++....++...| +++++...+..+.+.+ +.+..+++.-.-++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3334455566777777777777664 3333 23444444444555 4567777777766654 2333344433333444
Q ss_pred cCC--hHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC---
Q 012234 222 TGF--LHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS---GL--- 290 (468)
Q Consensus 222 ~g~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~--- 290 (468)
.|+ .++++.+++++.+ +|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 444 2566777766655 34567777777778888888888888888876543 445555544444333 22
Q ss_pred -HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC------
Q 012234 291 -VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA----RRISEATEFVSKM-PVKP-SAKVWGALLYGASISG------ 357 (468)
Q Consensus 291 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g------ 357 (468)
.+....+..+++.. .+-+...|+.+...+... +...+|.+.+.+. ...| +......|+..|+...
T Consensus 198 ~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 198 MRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred cHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhh
Confidence 24566666566542 233667787777777663 3445677777665 2233 4666777777776532
Q ss_pred ------------ChHHHHHHHHHHHhhCCC
Q 012234 358 ------------DVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 358 ------------~~~~a~~~~~~~~~~~~~ 375 (468)
..++|..+++.+.+.+|-
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235677777776544553
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=4e-06 Score=64.62 Aligned_cols=119 Identities=9% Similarity=0.013 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
....-.+...+...|++++|.++|+-+. ..| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3444556667788999999999999873 344 67888999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 012234 389 QAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (468)
..|+.+.|.+-|+..+...- .+|...++.++.+..+..+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999998876431 245556666666666665543
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2.6e-05 Score=64.77 Aligned_cols=244 Identities=9% Similarity=0.042 Sum_probs=162.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
++-+.-.|++..++..-...... +.+...-..+.++|...|.+..... .+.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566678888888776655433 2344444556677777776654332 222222 33333444344444444454
Q ss_pred HHHHHH-HhhccCCCc---chHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012234 226 HGAQRV-FDRFKGRSL---IIWT-AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 226 ~~a~~~-~~~~~~~~~---~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (468)
+.-+.- .+.+..+.. .++. .-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 333333222 1232 33457889999999999887621 222222334456677889999999999
Q ss_pred hhhhcCCCCCHhHHHHHHHHHh----ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 301 MSGQYGIQPSVEHYACMVGVLS----RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 301 ~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
|.. -.+..+.+.|..++. -.+...+|.-+|+++. ..|++.+.+....++...|++++|..+++.++..++
T Consensus 163 mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 984 234566776666665 3457999999999994 788999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 012234 375 ENTGNYIIMANLYSQAGRWDEAD-RVREQMKE 405 (468)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 405 (468)
.++.+...++-+-...|.-.++. +.+.+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999998888888876554 45565544
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=4.4e-05 Score=76.11 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
..++..+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3444555566777778888888888888888888888888888876
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0011 Score=60.93 Aligned_cols=367 Identities=13% Similarity=0.093 Sum_probs=202.5
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--CeehHHHHHH
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIIS 116 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 116 (468)
|-|..+|..||+-+... ..+++.+.++++...- +.....|..-|..-.+..+++..+++|.+.... +...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 56888999999987655 8999999999998753 446778899999999999999999999987753 5666666554
Q ss_pred HHHh-cCCHHHH----HHHHhhCCC------CCHhHHHHHHHH---------HHhCCChHHHHHHHHHHHHCCCCC----
Q 012234 117 GYMV-HGFVEKA----MDLFQVMKR------PGLSTWNAVISG---------LVQNNRHEAVLDLVREMQASGVRP---- 172 (468)
Q Consensus 117 ~~~~-~~~~~~A----~~~~~~~~~------~~~~~~~~l~~~---------~~~~g~~~~a~~~~~~m~~~~~~p---- 172 (468)
--.+ .|+...+ .+.|+-... .+...|+..+.. |..+.+.+...+++++++..-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 2222221 112221111 222344444432 344456677888888887531110
Q ss_pred --CHHHHHHHHHHH-------HccCChhhHHHHHHHHHH--cCCCCchhH---------------HHHHHHHHHhcCChH
Q 012234 173 --NAVTISSIFSLF-------SHFSNLKGGKEIHGYAVK--NRYDRNIYV---------------ATAIIDTYAKTGFLH 226 (468)
Q Consensus 173 --~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~g~~~ 226 (468)
|-.+|..-++.. .+...+..|+++++++.. .|......+ +..+|.-- +.+-+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCcc
Confidence 112222222211 223456667777776654 232211111 21222111 111000
Q ss_pred ---------HHHHHHhhccC---CCcchHHH-------HHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 227 ---------GAQRVFDRFKG---RSLIIWTA-------IISAYAAHGD-------ASKAVSLFNEMLNNGIQPDPVTFTA 280 (468)
Q Consensus 227 ---------~a~~~~~~~~~---~~~~~~~~-------l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (468)
...-.+++... -.+..|.- .-+.+...|+ .+++..+++..+..-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111000 00011111 1112222332 3455555555544322233344443
Q ss_pred HHHHHhcc---CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC---CCC-CHHHHHHHHHHH
Q 012234 281 VLSACAHS---GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKP-SAKVWGALLYGA 353 (468)
Q Consensus 281 l~~~~~~~---~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~~l~~~~ 353 (468)
+.+.--.. ...+.....++++.......|+ .+|..++....+..-+..|..+|.+.+ ..+ ++.+..+++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 33221111 1244555666666654444554 356677777777788888888888774 223 455666666554
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
+ .++.+.|.++|+-.++..++++..-...++.+.+.|+-..|..+|++....++.+
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 4 4677888888888888888888777788888888888888888888888775543
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=3.7e-06 Score=65.56 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=73.5
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
......+...+...|++++|.+.++++. .+.+...|..+...+...|++++|...++++.+.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3445556667777788888887777762 23356777777788888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888777643
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=6.3e-05 Score=68.06 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=77.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCC
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARR 326 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 326 (468)
..+...|.+++|+..++.+... .+-|........+.+...++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 3444556666666666665554 2223344444455566666666666666666532 443 3344455566666666
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 327 ISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 327 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+.+|+.+++... .+.|+..|..|..+|...|+..++.... +..|...|++++|...+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 666666665552 3345566666666666666655554433 334556666777777766666
Q ss_pred hCC
Q 012234 405 ESG 407 (468)
Q Consensus 405 ~~~ 407 (468)
+..
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 544
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=0.00012 Score=73.08 Aligned_cols=234 Identities=7% Similarity=0.009 Sum_probs=112.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 121 (468)
...+..|+..+...+++++|.++.+...+..+. ....|-.+...+...++.+.+..+ .+ +......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~-----------l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL-----------IDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh-----------hhhcccc
Confidence 345666666666667777777766655554322 223333333355555554444433 11 1111222
Q ss_pred CCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 012234 122 GFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199 (468)
Q Consensus 122 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 199 (468)
.++.-...+...+.. .+..++..+..+|.+.|+.++|..+++++++.. +-|....+.+.-.++.. ++++|.+++..
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 222111222222221 222345556666666666666666666666654 34455555555555555 66666666555
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHH
Q 012234 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTF 278 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~ 278 (468)
++.. +...+++..+..++.++...++. +++.-..+.+.+... |..--..++
T Consensus 175 AV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 175 AIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred HHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHHH
Confidence 4432 44445555555555555443332 122222222222221 222223344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHh
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLS 322 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 322 (468)
-.+-..|...++++++..+++.+.+. .| |.....-++..|.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~---~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEH---DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhc---CCcchhhHHHHHHHHH
Confidence 44555666666777777777776632 33 3444445555543
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00013 Score=66.13 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=107.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~ 354 (468)
-|..-+ .+...|+++.|+..++.+.+. .+.|+.......+.+.+.++..+|.+.++++ ...|+ ...+..+..++.
T Consensus 309 ~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 344444 345679999999999999864 3445666677789999999999999999998 35666 677888899999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+.|++.+|+.++......+|+++..|..|+.+|...|+..+|..-..+....
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887776553
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=9.8e-06 Score=73.76 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=98.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 354 (468)
....++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.- .+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566667778888888888888864 355 34457777777788888888887762 2335667777778889
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
..++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888775
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.0002 Score=59.17 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT---AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 290 (468)
.++-+....|+.+.|...++.+..+-+.++. .-.-.+-..|++++|+++++.+.+.. +.|..++..-+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 3444445556666666665554432121111 11123345677888888888887764 3455666655555666677
Q ss_pred HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC---ChHHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISG---DVELGKFV 365 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g---~~~~a~~~ 365 (468)
--+|++-+....+ .+..|...|.-+...|...|++++|.-.++++. ..| ++..+..+...+...| +.+.+.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6677777777765 456788888888888888888888888888873 444 5666666666655444 66778888
Q ss_pred HHHHHhhCCCCcchHHH
Q 012234 366 CDHLFEIEPENTGNYII 382 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~ 382 (468)
|.+++++.|.+...+..
T Consensus 214 y~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHhChHhHHHHHH
Confidence 99999988865554443
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00016 Score=71.40 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=116.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--R-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280 (468)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (468)
....+...+..|.....+.|.+++|..+++.+.+ | +...+..++..+.+.+++++|+..+++..... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456678888899999999999999999999876 3 34678888899999999999999999998863 234566777
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALL 350 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~ 350 (468)
+..++...|++++|..+|+++... .+-+..++..+...+...|+.++|...|++.. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 888899999999999999999863 23347788899999999999999999999872 344455555444
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00012 Score=60.35 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
.|..++-+....|+.+.|...++++... + |.+. .-..-...+-..|++++|.++++.+.++ -+.|..++-.-+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555666777889999999999998876 3 4433 2222222355679999999999999975 24466777777777
Q ss_pred HhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC---ChHH
Q 012234 321 LSRARRISEATEFVSKM--PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG---RWDE 395 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 395 (468)
.-..|+.-+|++-+.+. ....|...|.-+...|...|+++.|.-.+++++-..|-++..|..+++.+.-.| +..-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788877888777665 256789999999999999999999999999999999999999999999988766 4567
Q ss_pred HHHHHHHHHhCCC
Q 012234 396 ADRVREQMKESGL 408 (468)
Q Consensus 396 A~~~~~~m~~~~~ 408 (468)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888988877554
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=3e-05 Score=70.64 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
.....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++.... .+-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344566777778899999999999999988888888899999999999999999998865 2335666777777889999
Q ss_pred CHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 012234 290 LVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVK 340 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 340 (468)
+++.|+.+.+++.. ..|+ -.+|..|..+|...|++++|+..++.++..
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999984 3664 568999999999999999999999988633
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=3.5e-05 Score=60.01 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 262 LFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 262 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
.+++.... .|+ ......+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555543 343 345566777788889999999999888753 2446778888888899999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 340 KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 340 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
.| +...+..+...+...|+++.|...++++++..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34 577888888899999999999999999999998776533
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.2e-06 Score=49.73 Aligned_cols=35 Identities=40% Similarity=0.678 Sum_probs=29.0
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG 42 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 42 (468)
.+||++|.+|++.|++++|.++|++|. +.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 478888888888888888888888888 77788873
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=6.2e-05 Score=59.26 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPSA----KVWGALLYGASISGDVEL 361 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~ 361 (468)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666666666665421111 11222334455566666666666666652 12222 233445566666777777
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
|+..++.. ...+..+..+..++++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77766542 222334456666777777777777777777653
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=6.8e-05 Score=59.04 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc----chHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch--HHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG----VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL--WICN 81 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 81 (468)
.|..++..+. .++...+.+.++.+. ... |+. .....+...+...|++++|...|+.+......++. ...-
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~-~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLA-KDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHH-HHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4555555553 666677777777776 322 222 22333445566667777777777777766533322 2333
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC--CeehHHHHHHHHHhcCCHHHHHHHHhh
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIISGYMVHGFVEKAMDLFQV 133 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~ 133 (468)
.+..++...|++++|+..++....+ .+..+......+.+.|+.++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566666677777777766654332 223344445555556666666555543
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=1.9e-06 Score=48.51 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=25.0
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCC
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP 40 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 40 (468)
+.+||.+|.+|++.|+++.|.++|+.|. +.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~-~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMK-EQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC
Confidence 3577777777777777777777777777 566665
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.19 E-value=7e-06 Score=55.21 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG-RWDEADRVREQMKE 405 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 405 (468)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998765
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=3.1e-06 Score=48.04 Aligned_cols=34 Identities=38% Similarity=0.740 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 174 (468)
+||.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999988888873
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=3e-06 Score=59.58 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=50.6
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHH
Q 012234 324 ARRISEATEFVSKMP-VKP---SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666666652 122 344555567777777777777777777 555666666666778888888888888887
Q ss_pred HHH
Q 012234 400 REQ 402 (468)
Q Consensus 400 ~~~ 402 (468)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=3.5e-05 Score=55.45 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=74.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 314 YACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+..+...+...|++++|...++++ ...| +...+..+...+...|+++.|...+++.....|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 2333 34667778888888899999999999998888888888889999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 012234 392 RWDEADRVREQMKES 406 (468)
Q Consensus 392 ~~~~A~~~~~~m~~~ 406 (468)
++++|...+.+..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887653
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=5.2e-05 Score=57.44 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMAN 385 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 385 (468)
+..++..+.+.|++++|.+.|.++. ..|+ ...+..+..++...|+++.|...++.+....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555566666665555552 1221 2344555666666666666666666666665543 345666666
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 012234 386 LYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666543
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=5.2e-06 Score=46.70 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 172 (468)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.12 E-value=9.8e-06 Score=53.72 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=52.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+...|++++|+..|+++++..|.++.++..++.++.+.|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999999999999999999999999987643
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.07 E-value=0.0026 Score=56.36 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhc-CCCCC--Hh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-----PDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQY-GIQPS--VE 312 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~--~~ 312 (468)
.+..+...+.+.|++++|.++|++....... .+.. .|...+-++...||...|...+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3556677888999999999999988764322 2222 23334446667789999999999887431 22222 34
Q ss_pred HHHHHHHHHhc--cCChHHHHHHHHhCCCCCCHHHHHHHH
Q 012234 313 HYACMVGVLSR--ARRISEATEFVSKMPVKPSAKVWGALL 350 (468)
Q Consensus 313 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~l~ 350 (468)
....|+.++-. ...+++|+.-|+.+. +.|.+.-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 45667777754 346888888888885 44555444443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=0.00014 Score=55.07 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALL 350 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~ 350 (468)
++..+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|+++.|...|+++. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555666667777777777777765321111 12345556677777777777777777652 2222 45667777
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.++...|+.++|...++++.+..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77888888888888888888888877655443
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00034 Score=62.01 Aligned_cols=266 Identities=14% Similarity=0.080 Sum_probs=155.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 012234 116 SGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~ 191 (468)
..+.+..++.+|+..+....+ |+ ..-|..-+..+...|++++|+--.+.-++. +|. .....-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 344555556666666655543 32 223444445555556666665555444332 221 123333344444444444
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---c--chHHHH-HHHHHHcCChHHHHHHHHH
Q 012234 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---L--IIWTAI-ISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~--~~~~~l-~~~~~~~g~~~~a~~~~~~ 265 (468)
+|.+.++. ...+ ....++..++.+...+ + ..|..+ ..++...|++++|...--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444430 0000 1122223333332211 2 233333 3466778888888887666
Q ss_pred HHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHH-------------HHHHHhccCChHHH
Q 012234 266 MLNNGIQPDPVTFTAVLS--ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-------------MVGVLSRARRISEA 330 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-------------l~~~~~~~~~~~~A 330 (468)
..+.. ++ ..+...++ ++-..++.+.+...|.+.. ...|+...-.. =..-..+.|++.+|
T Consensus 195 ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 65532 11 12222232 3445677888888888877 34555322211 12234578899999
Q ss_pred HHHHHhC-C-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 331 TEFVSKM-P-----VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 331 ~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
.+.|.+. . .+|+...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 2 445566777777788899999999999999999998888888888999999999999999988887
Q ss_pred hCCCC
Q 012234 405 ESGLA 409 (468)
Q Consensus 405 ~~~~~ 409 (468)
+....
T Consensus 349 q~~~s 353 (486)
T KOG0550|consen 349 QLEKD 353 (486)
T ss_pred hhccc
Confidence 65443
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=9.8e-05 Score=67.57 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=90.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGD 358 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 358 (468)
-...+...|+++.|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 455677889999999999999863 2335778888889999999999999999988 3444 57788999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
+++|+..|+++++++|.++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988887776665444
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00012 Score=62.25 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=67.2
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVEL 361 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~ 361 (468)
..+.+++++|+..|.+.++ +.| |+..|..=..+|.+.|.++.|++=.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4456677777777777763 344 4555555666777777777777666554 34554 4577777777777777777
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
|++.|+++++++|+|......|-.+=-+.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 777777777777777655555544433333
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=2e-05 Score=52.79 Aligned_cols=54 Identities=20% Similarity=0.411 Sum_probs=47.3
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...|++++|++.|+++...+|.+..+...++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999998876643
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00042 Score=59.28 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=89.5
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISG---DVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
+-|...|-.|...|...|+++.|..-|.+.. ..+++..+..+..++.... +..++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4578999999999999999999999998873 3456777777777765433 5678999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 012234 383 MANLYSQAGRWDEADRVREQMKESGLAKIP 412 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 412 (468)
|+..+...|++.+|...|+.|.+..-...|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987664433
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.4e-05 Score=43.70 Aligned_cols=30 Identities=40% Similarity=0.670 Sum_probs=24.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCC
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPV 37 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~ 37 (468)
++||.+|++|++.|++++|.++|++|. +.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~-~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR-ERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh-HCc
Confidence 478888888888888888888888887 544
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.89 E-value=0.0023 Score=55.02 Aligned_cols=58 Identities=17% Similarity=0.011 Sum_probs=38.8
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH---HHHHHHHHhCCCHHHHHHHHhhcCC
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC---NALIGMYAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (468)
.....+...|+++.|.+.|+.+....+.+ .... -.++.++.+.+++++|...|++..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444556788888888888887765443 2222 3456777788888888888877765
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.026 Score=53.97 Aligned_cols=183 Identities=11% Similarity=-0.018 Sum_probs=89.1
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHh-CCCC--------chHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeeh
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKM--------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 110 (468)
|.+..|..+.......-+++.|...|-+...- |++. +...-.+-+. +--|++++|+++|-++..+|.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh--
Confidence 66777777776666655666666555443221 1110 1111111122 224778888888877766553
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CC---HhHHHHHHHHHHhCCChHHHHHHHHHHHH------------------
Q 012234 111 YSAIISGYMVHGFVEKAMDLFQVMKR--PG---LSTWNAVISGLVQNNRHEAVLDLVREMQA------------------ 167 (468)
Q Consensus 111 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~------------------ 167 (468)
.|..+.+.|++-...++++.-.. .| ...|+.+...+.....|++|.+.|..-..
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE 842 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE 842 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence 23445555666655555554322 11 12455555555555555555554433211
Q ss_pred ---CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 168 ---SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 168 ---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
..++.+....-.+..++.+.|.-++|.+.|-.. + .| .+.++.+...++|.+|.++-+...-|
T Consensus 843 ~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 843 VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 112334444445555555556555555544221 1 11 12344555556666666665554433
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00035 Score=63.98 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=80.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhcc
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRA 324 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 324 (468)
....+...|++++|+..|+++++.. +-+...+..+..++...|++++|+..++++... .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999863 335678888889999999999999999999853 45 577888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHH
Q 012234 325 RRISEATEFVSKM-PVKPSAKVWGAL 349 (468)
Q Consensus 325 ~~~~~A~~~~~~~-~~~~~~~~~~~l 349 (468)
|++++|+..|++. ...|+.......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999987 355654433333
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00026 Score=57.57 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
..+..+...+...|++++|...|++.. ..|+ ...+..+...+...|++++|...+.++.+..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345555566666677777776666552 1121 35677778888888888888888888888888888888888888
Q ss_pred HHHcCC
Q 012234 387 YSQAGR 392 (468)
Q Consensus 387 ~~~~g~ 392 (468)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00026 Score=57.41 Aligned_cols=94 Identities=12% Similarity=-0.058 Sum_probs=73.8
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
...+..+...+...|++++|+..|++.. ..|+ ..++..+...+...|++++|+..++++....|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556667777778888888888887762 2222 3578888899999999999999999999999988888888888
Q ss_pred HHH-------HcCChHHHHHHHHHHH
Q 012234 386 LYS-------QAGRWDEADRVREQMK 404 (468)
Q Consensus 386 ~~~-------~~g~~~~A~~~~~~m~ 404 (468)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887766665543
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0025 Score=56.53 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHhc-CCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 115 ISGYMVH-GFVEKAMDLFQVMKR-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 115 i~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
...|-.. |++++|++.|++..+ .. ...+..+...+.+.|++++|+++|++...
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444 555555555544432 11 11344445555566666666666655544
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=97.81 E-value=0.00094 Score=52.02 Aligned_cols=89 Identities=10% Similarity=-0.026 Sum_probs=77.7
Q ss_pred HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChH
Q 012234 317 MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (468)
..--+...|++++|..+|+-+. ...+..-|..|..++...++++.|+..|..+..+.++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999998773 34467778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012234 395 EADRVREQMKE 405 (468)
Q Consensus 395 ~A~~~~~~m~~ 405 (468)
.|+.-|+..+.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988876
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.81 E-value=9.7e-05 Score=50.24 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
...+...++++.|.+.+++++..+|.++..+...+.+|.+.|++.+|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999987554
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.81 E-value=0.0065 Score=57.26 Aligned_cols=58 Identities=7% Similarity=-0.118 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (468)
|....+.+-+..+...|.+++|.++- ++.....-|..|..-....=+++-|.+.|.+.
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44444555555666777777665431 12222333444444444444455555444433
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.0075 Score=51.89 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=101.7
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCc---c---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSL---I---IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH- 287 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 287 (468)
....+...|++++|...|+.+....+ . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445667788888888777765322 1 1234456777888888888888888775222112233333333221
Q ss_pred -c---------------CC---HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHH
Q 012234 288 -S---------------GL---VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348 (468)
Q Consensus 288 -~---------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 348 (468)
. .| ...|...|+.+++. -|+. .-..+|...+..+...- ...-..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 23444555555544 2332 22233333332221000 011123
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+..-|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45668889999999999999999877644 456788899999999999998876653
No 170
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=3e-05 Score=42.42 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
+||.++++|.+.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=7.8e-05 Score=52.33 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHH
Q 012234 253 HGDASKAVSLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 330 (468)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..++++ . ...| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3555666666666555422 11233333355556666666666666655 2 1112 122223334555555555555
Q ss_pred HHHHH
Q 012234 331 TEFVS 335 (468)
Q Consensus 331 ~~~~~ 335 (468)
++.|+
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 172
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.043 Score=52.97 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 012234 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351 (468)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~ 351 (468)
.-...+.+.-+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+..+ .+.-|.-.+.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3344455666667778899999988877765 5888888888899999999999999888875 2566777889
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+|.+.|+.++|...+-+.-. . .....+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999888765322 1 1678889999999999887544
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0014 Score=57.92 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA-CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57777888888888999999999987543 2233344333333 333567777999999998754 5567778888888
Q ss_pred HhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 321 LSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 899999999999998873 2233 35899999999999999999999999999887643
No 174
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.031 Score=50.75 Aligned_cols=375 Identities=11% Similarity=0.081 Sum_probs=200.2
Q ss_pred HhcCCChhHHHHHHHHhhhCCCCCCCcch------HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH--HH
Q 012234 16 YSQGGFYEECKALFREMLNSPVLRPDGVT------VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG--MY 87 (468)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~ 87 (468)
+-+++++++|..+|.+..++. ..++.. -+.+++++.. .+.+.....+....+..+ ...|-.+.. .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 457889999999999987442 233222 2345555543 455655555555554432 222333333 34
Q ss_pred HhCCCHHHHHHHHhhcCCC---------C---------eehHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCHhH
Q 012234 88 AKCGSLDYARALLDEMSDK---------D---------EVSYSAIISGYMVHGFVEKAMDLFQVMKR--------PGLST 141 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~---------~---------~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~ 141 (468)
.+.+++++|.+.+..-.+. | ...=+..+.++...|++.+++.+++++.. -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4688899988887654331 1 11124566778899999999999988864 56777
Q ss_pred HHHHHHHHHhC--------CC-------hHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHcc--CChhhHHHHHH
Q 012234 142 WNAVISGLVQN--------NR-------HEAVLDLVREMQAS------GVRPNAVTISSIFSLFSHF--SNLKGGKEIHG 198 (468)
Q Consensus 142 ~~~l~~~~~~~--------g~-------~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~ 198 (468)
||.++-.+.++ .. ++.++-+.++|... .+.|....+..++....-. ....--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 87755444332 11 22233333333221 1234333333333332211 12222334444
Q ss_pred HHHHcCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhccC--------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 199 YAVKNRYDRNIYV-ATAIIDTYAKTGFLHGAQRVFDRFKG--------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 199 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
...+.-+.|+-.. ...+...+.+ +.+++..+-+.+.. .=+.+|..++....+.++...|...+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 4444444444322 2223333332 33333333332221 22345666666667777777776666554432
Q ss_pred CCCCCHHH---------------------HH------------------------HHH---HHHhccCC-HHHHHHHHHH
Q 012234 270 GIQPDPVT---------------------FT------------------------AVL---SACAHSGL-VDKAWDIFNA 300 (468)
Q Consensus 270 ~~~p~~~~---------------------~~------------------------~l~---~~~~~~~~-~~~a~~~~~~ 300 (468)
.|+... ++ .++ .-+-+.|. -++|+.+++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 222110 10 011 11222333 5667777776
Q ss_pred hhhhcCCCC-CHhHHHHHH----HHHhc---cCChHHH---HHHHHhCCCCC----CHHHHHHHHHH--HHHcCChHHHH
Q 012234 301 MSGQYGIQP-SVEHYACMV----GVLSR---ARRISEA---TEFVSKMPVKP----SAKVWGALLYG--ASISGDVELGK 363 (468)
Q Consensus 301 ~~~~~~~~p-~~~~~~~l~----~~~~~---~~~~~~A---~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~ 363 (468)
+.+ +.| |...-+.+. ..|.. ...+.+- +.++.+.++.| +...-|.|.++ +..+|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 663 233 332222221 22221 1222222 23334444444 34566666665 56799999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
-.-.-..+..| ++.+|..++-++....++++|..++..+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888888888 89999999999999999999999998753
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00045 Score=49.44 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV-KPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
.+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.+++. .. +.+..++..+...+...|+++.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 333444444444444444321 1112233334444444444455555444443 11 1222344555555555555555
Q ss_pred HHHHHHHHHhhCC
Q 012234 362 GKFVCDHLFEIEP 374 (468)
Q Consensus 362 a~~~~~~~~~~~~ 374 (468)
|...+.++.+..|
T Consensus 87 a~~~~~~~~~~~~ 99 (100)
T cd00189 87 ALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHccCC
Confidence 5555555554443
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0001 Score=62.58 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=78.3
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 319 GVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
.-+.+.+++.+|+..|.+. ...| |.+.|..-..+|.+.|.++.|++-++.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999887 4555 6777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 012234 397 DRVREQMKES 406 (468)
Q Consensus 397 ~~~~~~m~~~ 406 (468)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887653
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.011 Score=46.87 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHHHH
Q 012234 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP---SAKVW 346 (468)
Q Consensus 271 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---~~~~~ 346 (468)
.-|+...-..|..+....|+..+|...|.+...- -+..|......+.++....+++..|...++++. .+| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3567766777888899999999999999988752 334577778888888889999999999988873 222 23444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..+...+...|.+..|+..|+.+....| .+......+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5677889999999999999999998877 4567777888899999999888766665554
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00049 Score=60.97 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=89.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh---hhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-------C-CCCCHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAM---SGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-------P-VKPSAK 344 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-~~~~~~ 344 (468)
.|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566678888887765432 22333332 2456677888888888999988888754 1 223456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh----C--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEI----E--PENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...+|...|.-..+++.|+..+.+-+.+ + ......+..|+.+|...|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777888888888888998887765544 1 334567889999999999999998877666553
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.00075 Score=54.90 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=57.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHH
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYM 119 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 119 (468)
+..+...+...|++++|...+++.++....+. ...+..+..++.+.|++++|...+++..+. +...+..+...+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44444445555555555555555554432221 234455555555555555555555554431 2333444444444
Q ss_pred hcCC--------------HHHHHHHHhhCCCCCHhHHHHHHHHHHhCCC
Q 012234 120 VHGF--------------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154 (468)
Q Consensus 120 ~~~~--------------~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (468)
..|+ +++|.+.+++....+...|..++..+...|+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 4443 4566777776666555556666666655554
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.0033 Score=60.32 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++..|.++.-.....|++++|...++++.+++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455666665556666777777777777777777 45677777777777777777777777766543
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0019 Score=50.06 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 188 (468)
..+...+...|++++|.++|+.+.. .+..-|..|..++...|++.+|+..|......+ +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3344444455555555555554433 223345555666666666666666666666554 344555556666666666
Q ss_pred ChhhHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVK 202 (468)
Q Consensus 189 ~~~~a~~~~~~~~~ 202 (468)
+.+.|++.|+.++.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00018 Score=47.52 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=46.9
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 317 MVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+...+...|++++|++.|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888877 3445 567888888888899999999999999998888764
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.041 Score=49.29 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (468)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... +-.+.-|...+.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 45555666777788777777655543 47888888889999999999988887654 23457788889999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
|+..+|.....+ ..+..-+..|.+.|++.+|.+..-+.
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999988888776 12256677889999999998875444
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.0014 Score=47.17 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChhhHHHHHHHHHHcCCCCchhH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGV-RPNAVTISSIFSLFSHFS--------NLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-....+|+.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 899999999998887654 24456788999999999999999
Q ss_pred HHHHHHHHHh
Q 012234 212 ATAIIDTYAK 221 (468)
Q Consensus 212 ~~~l~~~~~~ 221 (468)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.62 E-value=0.014 Score=55.14 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=43.5
Q ss_pred CChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 223 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
|-.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+. ..+++.....+++++|..+-++.-
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 33344444444444444455555555566666677777777776432 236666777888888887777665
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.00063 Score=48.83 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=65.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCC-CCCcchHHHHHHHhhccC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVL-RPDGVTVVSVLQACGQSS--------DIVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
.-|..+...+++.....+|+.++ +.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|+..++.|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 34666667799999999999999 8888 899999999999876652 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 012234 82 ALIGMYAK 89 (468)
Q Consensus 82 ~l~~~~~~ 89 (468)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.0011 Score=60.97 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGR------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
......+++......+++.+..++.+.... ...+..+++..|...|..+.++.+++.=...|+-||..+++.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 333444444444444555555555544431 12344566666666666666666666666666666666666666
Q ss_pred HHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH
Q 012234 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315 (468)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 315 (468)
+.+.+.|++..|.++...|..+ +.-.+..++.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 6666666666666666666544 3333444443
No 188
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.59 E-value=0.054 Score=49.21 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
.+|...+.+-.+....+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...+ +.+...-+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 467777877788888999999999999888 6778888999988766 478889999998766542 333334456677
Q ss_pred HHhccCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 320 VLSRARRISEATEFVSKMP--VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
-+.+.++-+.|..+|+... +..+ ..+|..++.--..-|+...+..+-+++.+..|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999998652 2222 5688999999999999999999999998888753
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.001 Score=61.11 Aligned_cols=111 Identities=13% Similarity=0.196 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC-----HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 111 YSAIISGYMVHGFVEKAMDLFQVMKR-PG-----LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184 (468)
Q Consensus 111 ~~~li~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 184 (468)
...+++.+....+++.+..++.+... |+ ..|..++++.|.+.|..++++.+++.=...|+-||..+++.++..+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 33444444444445555555544442 11 1244567777777777777777777666677777777777777777
Q ss_pred HccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
.+.|++..|.++...|...+...+..++...+.++.+
T Consensus 149 l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777666666655555555444444443
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.013 Score=49.07 Aligned_cols=129 Identities=9% Similarity=-0.003 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHH-----HH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT-----AI 215 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 215 (468)
+.+.++.++.-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...++.+.+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776555566666677777777778777777777666543333333222 23
Q ss_pred HHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 216 IDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
...|.-++++..|...|.++... ++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455566777777777666553 3344444444455567777777777777664
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.021 Score=45.27 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC-----CCcchHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RSLIIWTA 245 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 245 (468)
.|+...-..|..+....|+..+|...|++....-...|......+.++....++...|...++++.+ +.+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444455555555566666655555555544445555555555555555555555555555443 12233444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
+...+...|++..|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 455555566666666666655553
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.003 Score=47.16 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=55.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPN--AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYA 220 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 220 (468)
+..++...|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888887775544 234555666777777777777777777664311 01122222333455
Q ss_pred hcCChHHHHHHHhhc
Q 012234 221 KTGFLHGAQRVFDRF 235 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~ 235 (468)
..|+.++|+..+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 566666666555443
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.54 E-value=0.11 Score=51.44 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHH--hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 9 WNSMIAGY--SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 9 y~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
|...+.++ .|.|+.++|..+++... ..+ ..|..|...+-..|...+..++|..+|+...... |+......+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFma 119 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALY-GLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhc-cCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHH
Confidence 45555555 57899999999998876 433 2377888888889999999999999999998875 457777778888
Q ss_pred HHhCCCHHH----HHHHHhhcCCCCeehHHHHHHHHHhcCC----------HHHHHHHHhhCCCCC-----HhHHHHHHH
Q 012234 87 YAKCGSLDY----ARALLDEMSDKDEVSYSAIISGYMVHGF----------VEKAMDLFQVMKRPG-----LSTWNAVIS 147 (468)
Q Consensus 87 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~~-----~~~~~~l~~ 147 (468)
|.+.+.+.+ |+++++...+ ++..+-++++.+.+.-. ..-|.+.++.+.+.+ ..-...-..
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 998887654 6667775543 33444444444433211 122556666665422 111222233
Q ss_pred HHHhCCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 148 GLVQNNRHEAVLDLVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
.+...|++++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 45667889999888843 3333223333344455666777788888888877777766
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.014 Score=52.66 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=95.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC-------CcchHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGR-------SLIIWTAIISAYAA---HGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
.++-+|....+++..+++.+.+... .+..-...+-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555566677777777777766652 11223334445566 7888888888888655555677777776666
Q ss_pred HHhc---------cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC-h---HHHHHHH---HhC-------CCC
Q 012234 284 ACAH---------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR-I---SEATEFV---SKM-------PVK 340 (468)
Q Consensus 284 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~---~~A~~~~---~~~-------~~~ 340 (468)
.|-. ....++|...|.+.- .+.|+...=-.+...+...|. + .+..++- ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 223667777777655 344554332222222333332 1 1222222 111 133
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
.+-+.+.+++.++.-.|+.+.|.+.++++.+..|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 466777888888888999999999999998887654
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.46 E-value=0.0001 Score=40.97 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00019 Score=47.95 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
..|++++|..+|+++... .+.+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555543 1224444445555555555555555555555
No 197
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0055 Score=49.62 Aligned_cols=63 Identities=11% Similarity=-0.016 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRP--NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.|..+...+...|++++|+..|++.......| ...++..+..++...|+.++|...++.+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555566666666777776666665442111 1234555556666666666666666666554
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.45 E-value=0.0014 Score=56.71 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMAN 385 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 385 (468)
|..-+..+.+.|++++|+..|+.+. ..|+ +..+.-+...|...|++++|...|+.+.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4443444445566666666666552 2332 2355556667777777777777777777766654 334555566
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 012234 386 LYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++...|++++|.++++++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777654
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0023 Score=56.50 Aligned_cols=129 Identities=9% Similarity=0.125 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH-HhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV-LSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
.+|..+++...+.+..+.|..+|.++.+.. ..+..+|-..... |...++.+.|.++|+..- ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888899999999999999999998542 2234455554444 333567777999999872 55678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+...|+.+.|..+|+++...-|.+. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998866544 57888899999999999999999888774
No 200
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0076 Score=57.90 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=101.9
Q ss_pred CCcchHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHhhh
Q 012234 238 RSLIIWTAIISAYAA--HG---DASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHS--------GLVDKAWDIFNAMSG 303 (468)
Q Consensus 238 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 303 (468)
.+..+|...+.+... .+ ....|..+|++..+. .|+ ...+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 566788888887543 32 377999999999985 566 44555554444322 123344444444332
Q ss_pred hcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
......++..|..+.......|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++..|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 2123345677877777777789999999999988 4678888999999999999999999999999999999888544
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00058 Score=45.72 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=48.4
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISG-DVELGKFVCDHLFEIEP 374 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 374 (468)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777788888888777776 2334 4667788888888888 68888888888888776
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.38 E-value=0.0011 Score=60.48 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN---YIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+...|+.+..+|...|++++|+..|+++++++|++... |..++.+|...|+.++|+..+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777766633 677777777777777777777776664
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.36 E-value=0.012 Score=49.34 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=88.0
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCC-CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP-DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
+....-.....+...|++.+|++.|+.+.....-.| .......++.++-+.|+++.|...++..++.-+.-...-+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 334444455566778899999999999874321111 1234556677788889999999999888876544222223322
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCC-------eehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKD-------EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (468)
+.+.+......... ..++| ...+..++.-|-......+|...+..+.+.=...--.+...|.+.|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 22222111111110 00111 1123344444444455555554444443211111223455677777777
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChh
Q 012234 157 AVLDLVREMQASGVRPNAV----TISSIFSLFSHFSNLK 191 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~ 191 (468)
.|..-++.+++. -|++. ....++.++.+.|..+
T Consensus 159 aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 159 AAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 777777777664 33332 3344555555555554
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.011 Score=44.27 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=63.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPD--PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVL 321 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 321 (468)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888999999988888876654 34566677788888999999999888876521111 122222334566
Q ss_pred hccCChHHHHHHHHhC
Q 012234 322 SRARRISEATEFVSKM 337 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~ 337 (468)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7788888888776543
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.11 Score=46.84 Aligned_cols=81 Identities=7% Similarity=-0.103 Sum_probs=46.3
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHH
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKA 127 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 127 (468)
.+.+..++..|+..+...++..+. +...|..-...+...|++++|.--.+.-.+ .....+...-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344566777888888888887654 455566666677777777777765544332 1222333333444444444444
Q ss_pred HHHHh
Q 012234 128 MDLFQ 132 (468)
Q Consensus 128 ~~~~~ 132 (468)
.+.|+
T Consensus 137 ~~~~~ 141 (486)
T KOG0550|consen 137 EEKLK 141 (486)
T ss_pred HHHhh
Confidence 44443
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.30 E-value=0.00052 Score=41.00 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.++..+...|...|++++|++.++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999988887764
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.28 E-value=0.0006 Score=46.97 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEI----EPE---NTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+++.+...|...|++++|+..++++.+. +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888888888888888888888765 222 244678889999999999999999887654
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.0045 Score=50.53 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=73.3
Q ss_pred HHHhhC--CCCCHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------------
Q 012234 129 DLFQVM--KRPGLSTWNAVISGLVQN-----NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF-------------- 187 (468)
Q Consensus 129 ~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 187 (468)
..|+.. ...+-.+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445544 346667777777777543 77788888888888889999999999998876542
Q ss_pred --CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012234 188 --SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 188 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 224 (468)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356688899999999999999999988888876554
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.13 Score=45.98 Aligned_cols=283 Identities=14% Similarity=0.157 Sum_probs=174.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhCCC---CCHhHHHHHH--HHHHhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHH
Q 012234 111 YSAIISGYM--VHGFVEKAMDLFQVMKR---PGLSTWNAVI--SGLVQNNRHEAVLDLVREMQASGVRPNAVT--ISSIF 181 (468)
Q Consensus 111 ~~~li~~~~--~~~~~~~A~~~~~~~~~---~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~ 181 (468)
|..|-.++. -.|+-..|.++-.+..+ .|....--|+ .+-.-.|+++.|.+-|+.|.. .|.... ...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 344444433 34555666655544332 2333222233 233456888888888888875 232221 22233
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC-----CCcc--hHHHHHHHHH---
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RSLI--IWTAIISAYA--- 251 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~--- 251 (468)
-...+.|+.+.|..+-+..-... +.-.....+.+...|..|+++.|+++++.-.. ++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 33456777777777777666543 23345666788888888999998888876543 3332 1222322211
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHH
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 330 (468)
-.-+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++.+.+. .|.+..+...+ +.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHH
Confidence 12345555555544443 466643 2334557789999999999999999965 67766654333 4455653322
Q ss_pred H----HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 012234 331 T----EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA-GRWDEADRVREQMKE 405 (468)
Q Consensus 331 ~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 405 (468)
. +-+..|+ +.+......+..+....|++..|..-.+.+....|. ..+|..|++.-... |+-.++...+-+..+
T Consensus 314 RlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 2233343 335677778888999999999999988888888774 57888889887765 999999998877765
Q ss_pred C
Q 012234 406 S 406 (468)
Q Consensus 406 ~ 406 (468)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.24 E-value=0.15 Score=46.49 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.+|..++....+.++...|.+.+..+.-.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 46677777777777777777766665543
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.045 Score=46.03 Aligned_cols=133 Identities=8% Similarity=0.043 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHH-----
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----- 316 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~----- 316 (468)
..+.++..+.-.|.+.-....+++.++...+.++.....|++.-.+.||.+.|...|+...+. .-..+..+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445566666667777777778888777655556677777777777888888888888866543 22222222222
Q ss_pred HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 317 MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
....|.-.+++.+|...+.++. .+.++...|.-.-+..-.|+..+|++..+.+++..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 2233455566777777776664 2234555555555555667777777777777777664
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.01 Score=46.71 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=72.1
Q ss_pred hccCCHHHHHHHHHHhhhhcCCC--CCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQ--PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
...++.+.+...+.++...+.-+ |+... ..-.......++.. -..+...++..+...|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 45667777777777776543211 11111 11112222223222 1345566777888999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE-----SGLAKIP 412 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 412 (468)
..++++...+|-+...|..++.+|.+.|+..+|.++|+++.+ .|+.|.+
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999988854 3555443
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0013 Score=58.45 Aligned_cols=252 Identities=13% Similarity=0.035 Sum_probs=143.4
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCCCc----chHHHHHHHhhccCChHHHHHHHHHHH--H--hCCC-CchHHHHHHH
Q 012234 14 AGYSQGGFYEECKALFREMLNSPVLRPDG----VTVVSVLQACGQSSDIVFGMEVHNFVI--E--SHIK-MDLWICNALI 84 (468)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~ 84 (468)
.-+++.|+....+.+|+... +-| .-|. ..|..+..+|...+++.+|++....=+ . .|-+ -.......|.
T Consensus 25 ERLck~gdcraGv~ff~aA~-qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAAL-QVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHH-Hhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34688999999999999998 555 2332 335566666677778888887654321 1 1100 0112223345
Q ss_pred HHHHhCCCHHHHHHHHhhcCC-------C--CeehHHHHHHHHHhcCCH--------------------HHHHHHHhhCC
Q 012234 85 GMYAKCGSLDYARALLDEMSD-------K--DEVSYSAIISGYMVHGFV--------------------EKAMDLFQVMK 135 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~--------------------~~A~~~~~~~~ 135 (468)
+.+--.|.+++|.....+-.. + ...++..|...|...|+- +.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 555556777777655433221 1 223445555555444321 11333332211
Q ss_pred C-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 136 R-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQ----ASGVR-PNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 136 ~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
+ .| -..|..|.+.|.-.|+++.|+..-+.-+ +-|-+ .....++.+.+++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 11 1245555566666778888877654432 22322 123456777788888888888888777654
Q ss_pred HcCC-----CCchhHHHHHHHHHHhcCChHHHHHHHhhccC---------CCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 202 KNRY-----DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---------RSLIIWTAIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 202 ~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
...+ ........+|.+.|.-...+++|+.++.+-.. ....++-+|..+|...|..++|+.....-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4221 22334555677777777788888877765432 123466677777777888888777665544
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.17 E-value=0.16 Score=45.49 Aligned_cols=107 Identities=18% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
.+..+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++-.++-.. +-++..|..++..|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 3444455555666666665544432 35666666666677777776665554321 122355666666666
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
+.|+..+|..++.+++ + ..-+..|.+.|++.+|.+...
T Consensus 249 ~~~~~~eA~~yI~k~~--~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP--D-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC--h-----HHHHHHHHHCCCHHHHHHHHH
Confidence 6666667766666642 1 233455566666666655543
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0099 Score=53.18 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.++..+..++.+.+++.+|++..++.- .++|......=..++...|+++.|+..|+++++..|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456778888999999999999988772 456788888889999999999999999999999999999999999998888
Q ss_pred cCChHHH-HHHHHHHHhC
Q 012234 390 AGRWDEA-DRVREQMKES 406 (468)
Q Consensus 390 ~g~~~~A-~~~~~~m~~~ 406 (468)
..++.+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7776654 7788888653
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.014 Score=50.67 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC-CCC----CHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-VKP----SAKVWG 347 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~----~~~~~~ 347 (468)
.|...+....+.|++++|...|+.+.+.+ |+ +..+..+...|...|++++|...|+.+. ..| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444455677888888888777653 33 2355567777778888888888877762 222 245555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
.++..+...|+.+.|...++++.+..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5667777889999999999999888887653
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.0076 Score=49.23 Aligned_cols=89 Identities=15% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCCcchHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 012234 237 GRSLIIWTAIISAYAA-----HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS----------------GLVDKAW 295 (468)
Q Consensus 237 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 295 (468)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3555666777776654 366777777888999999999999999999987652 2346788
Q ss_pred HHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
+++++|... |+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 899998855 999999999999988887664
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.14 Score=42.93 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=26.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A 330 (468)
+.+.|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455567777777777777777765321111 23344555666666665533
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.07 E-value=0.03 Score=41.61 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=89.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
..-.|..++..++..+...+ .+..-+|.++--....-+-+-..+.++.+-+-+.+.|- .....++..|.+.|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN---- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc----
Confidence 34568888888888887764 25566776776555556666666666666543332221 11223344444433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
.+....+..+.....+|+-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++++.-+.|++
T Consensus 84 -----------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 -----------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344555667788899999999999999988777778999999999999999999999999999999974
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.003 Score=42.73 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=49.2
Q ss_pred HHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 319 GVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
..|.+.+++++|.++++.+. ..| ++..|......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46778888888888888773 334 5677777888888999999999999999998887765543
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0093 Score=53.33 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..++..+..++.+.+++..|++.+.++++.+|+|...+..-+.+|...|+++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 45677888899999999999999999999999999999999999999999999999999998754
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.022 Score=49.06 Aligned_cols=122 Identities=15% Similarity=-0.021 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC---CHHHHHHH
Q 012234 23 EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG---SLDYARAL 99 (468)
Q Consensus 23 ~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 99 (468)
+....-++.-. ..+ |-|...|-.|..+|...|+.+.|...|....+..+ ++...+..+..++.... ...++..+
T Consensus 139 ~~l~a~Le~~L-~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHL-QQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHH-HhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444444444 222 46777888888888888888888888888877653 36666666666655432 35677778
Q ss_pred HhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHH
Q 012234 100 LDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVIS 147 (468)
Q Consensus 100 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 147 (468)
|+++... ++.+...|...+...|++.+|...|+.|.+ |....+..+|.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 8877653 455666677778888888888888888775 33334444443
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.74 E-value=0.55 Score=44.66 Aligned_cols=376 Identities=12% Similarity=0.105 Sum_probs=221.4
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcc-hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
..|+.||.--......+.+..++..++.+ -|-.. -|......=.+.|..+.+.++|++.+.. ++.+...|.....
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 45666666555555667777777777733 24443 4555555567778888888898888765 4456666665544
Q ss_pred HH-HhCCCHHHHHHHHhhcCC------CCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHH---hC---
Q 012234 86 MY-AKCGSLDYARALLDEMSD------KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV---QN--- 152 (468)
Q Consensus 86 ~~-~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~--- 152 (468)
.+ ...|+.+...+.|+.... .+...|...|.--..++++.....++++..+-....|+..-.-|. +.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 33 346777777777777654 245567777777777888888888888877633333333322221 11
Q ss_pred ---CChHHHHHHHHHHHH--------------------CCCCCCHHH--HHHHHH-------HHHccCChhhHHHHHHHH
Q 012234 153 ---NRHEAVLDLVREMQA--------------------SGVRPNAVT--ISSIFS-------LFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 153 ---g~~~~a~~~~~~m~~--------------------~~~~p~~~~--~~~l~~-------~~~~~~~~~~a~~~~~~~ 200 (468)
...+++.++-..... .+.+.+..+ .+.+.. .+.........+..++.-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 122333322222111 000001001 111111 111111122222222222
Q ss_pred HHcC---C----CCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 201 VKNR---Y----DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 201 ~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
++.. + +++..++...+..-...|+.+.+.-+|+...-+= ...|-..+.-....|+.+-|..++....+--
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 2211 1 1234566777777788999999999998876542 2345555555555689888888887765543
Q ss_pred CC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-hHHHHHHHHHhccCChHHHH---HHHHhCC-CCCCH
Q 012234 271 IQ--PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-EHYACMVGVLSRARRISEAT---EFVSKMP-VKPSA 343 (468)
Q Consensus 271 ~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~-~~~~~ 343 (468)
++ |....+.+. .+-..|++..|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++.... .+-+.
T Consensus 362 ~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 362 VKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred CCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 33 333333333 345578999999999999875 3 543 22233345566788888887 5554442 22233
Q ss_pred HHHHHHHH-----HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 344 KVWGALLY-----GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 344 ~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
.+...+.- .+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 33333222 2344788999999999999999999999999998887766
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.74 E-value=0.052 Score=41.52 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=60.5
Q ss_pred HHHHHhccCChHHHHHHHHhCC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-HHHHHHH--HH
Q 012234 317 MVGVLSRARRISEATEFVSKMP----V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN-YIIMANL--YS 388 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~--~~ 388 (468)
-.....+.|++++|.+.|+.+. . +-....-..++.++.+.|+++.|...+++.++++|.++.+ |.....+ +.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444566778888888887773 1 1234566778889999999999999999999998887654 3333333 33
Q ss_pred HcCC---------------hHHHHHHHHHHHhC
Q 012234 389 QAGR---------------WDEADRVREQMKES 406 (468)
Q Consensus 389 ~~g~---------------~~~A~~~~~~m~~~ 406 (468)
.... ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3333 55666666666653
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.70 E-value=0.016 Score=39.79 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCC
Q 012234 78 WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNR 154 (468)
Q Consensus 78 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~ 154 (468)
.+++.+..+|...|++++|+..|+ +|+++.+.... ++ ..+++.+..++...|+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYE------------------------KALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH------------------------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH------------------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 456777777777777777777765 33444444433 22 3467888888888888
Q ss_pred hHHHHHHHHHHHH
Q 012234 155 HEAVLDLVREMQA 167 (468)
Q Consensus 155 ~~~a~~~~~~m~~ 167 (468)
+++|++.+++..+
T Consensus 62 ~~~A~~~~~~al~ 74 (78)
T PF13424_consen 62 YEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887653
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.75 Score=44.94 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... .+.-|.-.+..|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHH
Confidence 45555666777888888887776653 5677777777888888888877665544432 245566678888
Q ss_pred hccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
.+.|+.++|.+++.+.+..+ -...+|.+.|++.+|.+..-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 88888888888888874222 45667777788777766543
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.53 E-value=0.044 Score=41.44 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 269 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
....|+..+..+++.+|+..|++..|.++++...+.++++-+..+|..|+.-..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346688888888888888888888888888888888887777788888776543
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.51 E-value=0.14 Score=48.26 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=77.6
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 18 QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
-+|+++++.+..+.-.--..+| ....+.+++.+-+.|..+.|+++. .|+. .-.....+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHHHH
Confidence 3566666655555111011121 333566666666677777776652 1221 2344455677777777
Q ss_pred HHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 98 ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177 (468)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 177 (468)
++.++.. +...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+.....| -+
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~ 405 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG------DI 405 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------H
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CH
Confidence 6655444 444677777777777777777777766653 4555556666666666666665555544 13
Q ss_pred HHHHHHHHccCChhhHHHHH
Q 012234 178 SSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~ 197 (468)
+....++.-.|+.++..+++
T Consensus 406 n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 44444444555555554444
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.44 E-value=0.65 Score=41.75 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=54.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHhCCCHHHHHHHHhhcCC-CC--eehHHHHHHHHHhcCCHHHHHH
Q 012234 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIG--MYAKCGSLDYARALLDEMSD-KD--EVSYSAIISGYMVHGFVEKAMD 129 (468)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~~~~~~A~~ 129 (468)
.||-..|.+.-.+..+. +..|..-+..++. +-.-.|+.+.|.+-|+.|.. |. ..-...|.-..-+.|..+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 35555555554433221 2223322222322 22335667777777766654 21 1112223333345566666655
Q ss_pred HHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 130 LFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 130 ~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
.-+..-. |. ...+.+.+...+..|+|+.|+++++.-.+
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5554432 22 23556666666667777777776666544
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.43 E-value=0.29 Score=46.79 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhhhhcCCCCCHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDP-----VTFTAVLSACA----HSGLVDKAWDIFNAMSGQYGIQPSVE 312 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~ 312 (468)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++ ...+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444444555566666666665554421 11111 12333333332 245678889999998865 46665
Q ss_pred HHHHH-HHHHhccCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH-H
Q 012234 313 HYACM-VGVLSRARRISEATEFVSKMPV------KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM-A 384 (468)
Q Consensus 313 ~~~~l-~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~ 384 (468)
.|... .+.+...|++++|++.|++... ......+--+...+...+++++|...+.++.+.+.-+..+|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4566778899999999987531 11234555667778889999999999999998876666666554 4
Q ss_pred HHHHHcCCh-------HHHHHHHHHHHhC
Q 012234 385 NLYSQAGRW-------DEADRVREQMKES 406 (468)
Q Consensus 385 ~~~~~~g~~-------~~A~~~~~~m~~~ 406 (468)
-++...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556667888 8888888887653
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.74 Score=41.95 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
.+-..+..++.++.-.|+.++|.+..+++.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4556667777777778888888888888774
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.57 Score=40.54 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (468)
.....|++.+|..+|+...... +-+......+..+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3455566666666666665542 222344445666666666666666666665432 00111111112233333333333
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHH
Q 012234 329 EATEFVSKMPVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDE 395 (468)
Q Consensus 329 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 395 (468)
+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-..|+..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 3333333333234 44555555666666666666666555555542 3345555566666655554443
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.29 E-value=0.089 Score=39.79 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhh--------------CCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLN--------------SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (468)
|..++..+|-++++.|+.+....+++..-. .....|+.....+++.+++..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788999999999999999988876531 112334444455555555555555555555554433
Q ss_pred h-CCCCchHHHHHHHHH
Q 012234 71 S-HIKMDLWICNALIGM 86 (468)
Q Consensus 71 ~-~~~~~~~~~~~l~~~ 86 (468)
. +++.+..+|..|+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 2 333344445444443
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=96.19 E-value=0.076 Score=48.98 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
|+.....+..+....++++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555556666666666666666666666666666666666666666666665443
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.19 E-value=0.071 Score=47.04 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCC--CC--CHhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-----H
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGI--QP--SVEHYACMVGVLSRARRISEATEFVSKM-------PVKPS-----A 343 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~-----~ 343 (468)
.+..++...+.++++++.|+...+--.- .| ...++-.|...|.+..++++|.-+..+. ..+.- .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445555556666666666655431110 11 2345556666666666666655444433 11111 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
.....+.-++...|....|.+..+++.++. +........+++.|...|+.+.|+.-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222334455666777777777666665541 222334456667777777766666555443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.14 E-value=0.046 Score=50.24 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=43.0
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKPSA----KVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
+...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777664 455552 34777777777777777777777777775
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.05 E-value=0.083 Score=41.51 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCCchhHH
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-----NRYDRNIYVA 212 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 212 (468)
...++..+...|++++|+.+.+.+.... +.+...+..++.++...|+...|.+.|..+.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445556666777777777777766653 44556666777777777777777776666543 3666665443
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.02 E-value=0.096 Score=38.94 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCc---chHHHHHHHHHHcCC
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENT---GNYIIMANLYSQAGR 392 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~ 392 (468)
-++...|+.+.|++.|.+.- .+.....||.-..++.-+|+.++|..-+.+++++. +... ..|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34667788888888887762 34467888888888989999999999998888884 3322 246667778888899
Q ss_pred hHHHHHHHHHHHhCCC
Q 012234 393 WDEADRVREQMKESGL 408 (468)
Q Consensus 393 ~~~A~~~~~~m~~~~~ 408 (468)
-+.|..=|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999988888877775
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=1.9 Score=42.03 Aligned_cols=128 Identities=8% Similarity=-0.052 Sum_probs=77.7
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
-|++++|+++|-+|- +.. ..+....+.||+-.+.++++.--.. .-+.-...++.+...++....+++|.
T Consensus 747 ~g~feeaek~yld~d-rrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDAD-RRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccc-hhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999998886 322 3455666778887777665431000 00112346777777777777888888
Q ss_pred HHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 98 ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+.|..-.. -...+.++.+...+++-+.+-+.+++ +....-.+..++...|.-++|.+.+
T Consensus 817 ~yY~~~~~-----~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 817 KYYSYCGD-----TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHhccc-----hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 87765432 12345556666666666666665553 3344455566666666666666655
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.88 E-value=0.91 Score=42.92 Aligned_cols=157 Identities=8% Similarity=0.042 Sum_probs=101.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
..-.++++.+.+....-.-. +.....-.+.++..+.+.|..+.|+++... + ..-.....+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHH
Confidence 34567888876665411101 112245578899999999999999987542 1 23344567899999999988
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhH
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+.....|-
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 8764 677999999999999999999999987542 56666778888888888888877776651
Q ss_pred HHHHHHHHHhcCChHHHHHHHhh
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
++....++.-.|+.++..+++.+
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444455556776666665543
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.9 Score=38.13 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCcchHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-------VKPSA-KVWGALLYGASISGDVELGKFVCDHLFEI----EPENTGNYI 381 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 381 (468)
+......+.+...+++|-..+.+-. ..++. ..+...|-.+....++..|+..++...+. .|.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666665554432 12222 23444455555566777777777765544 355666666
Q ss_pred HHHHHHHHcCChHHHHHH
Q 012234 382 IMANLYSQAGRWDEADRV 399 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~ 399 (468)
.|+.+| ..|+.+++..+
T Consensus 233 nLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHh-ccCCHHHHHHH
Confidence 666665 44666665554
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.1 Score=44.48 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=51.7
Q ss_pred ccCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchHHHHHHHHHHcCC
Q 012234 323 RARRISEATEFVSKMP-------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE---NTGNYIIMANLYSQAGR 392 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 392 (468)
+.|++.+|...|.... ..|+. +.-|..++...|+++.|..+|..+.+..|. -|.++.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3444666665555441 22233 333666777777777777777777776544 34557777777777777
Q ss_pred hHHHHHHHHHHHhC
Q 012234 393 WDEADRVREQMKES 406 (468)
Q Consensus 393 ~~~A~~~~~~m~~~ 406 (468)
.++|..+|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777664
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.78 E-value=0.036 Score=30.55 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777777777777777777654
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.34 Score=42.47 Aligned_cols=143 Identities=15% Similarity=0.055 Sum_probs=69.0
Q ss_pred cCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHH
Q 012234 222 TGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a 294 (468)
.|+..+|-..++++.+ .|..+++..=.+|...|+...-...+++.... ..||.. .-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555544 23445555555666666666666666555443 223322 222233344455666666
Q ss_pred HHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 295 WDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMPVKPS------AKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
++.-++..+ +.| |.-.-..+...+...|++.++.++..+-....+ ...|-...-.+...+.++.|+++|+
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 666655552 222 333444455555566666666666655431111 1112222223334456666666664
Q ss_pred H
Q 012234 368 H 368 (468)
Q Consensus 368 ~ 368 (468)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.68 E-value=0.59 Score=35.87 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGI--QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (468)
-.....+.|++++|.+.|+.+...-. +-....-..++.++.+.++++.|...+++.++.+.-.|++ -|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 34445667777777777777766411 1123455567777777777777777777777654333432 23333444333
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
....+..+.-+- ..+- ..+....|..-|+++++..|++.
T Consensus 95 ~~~~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 222221111111 1111 12235678888888888888765
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.21 Score=42.61 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM----PVKP-SAKVWGALL 350 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~l~ 350 (468)
.|+.-+.. .+.|++..|...|...++.+.-.+ ....+--|..++...|++++|..+|..+ +..| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 334556666666666665321100 1222333556666666666666666554 1112 245556666
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
....+.|+.++|...|+++.+..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66677777777777777777777765544
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.59 E-value=0.073 Score=45.29 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCCcchHHHHHHHHhc-----CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhcc----------------CChHHH
Q 012234 3 KRDIVSWNSMIAGYSQ-----GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----------------SDIVFG 61 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a 61 (468)
++|-.+|-..+..|.. .+..+-....++.|. +.|+..|..+|+.|+..+-+. ..-+.+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 5677788888888754 366777788888998 999999999999999886543 233568
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHHHHHHHhhcC
Q 012234 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGS-LDYARALLDEMS 104 (468)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 104 (468)
.+++++|...|+.||..+-..|++++.+.+. ..+..++.-.|.
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 8999999999999999999999999988775 334444444443
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.55 E-value=0.034 Score=30.71 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777777777777777777777765
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.53 E-value=0.85 Score=35.42 Aligned_cols=45 Identities=7% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhcc
Q 012234 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS 55 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 55 (468)
-..++..+...+.+......++.+. ..+ +.+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHH
Confidence 3455666665566666666666665 333 24444555566555543
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=95.48 E-value=1.3 Score=41.27 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc
Q 012234 256 ASKAVSLFNEMLN-NGIQPD-PVTFTAVLSACAH---------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324 (468)
Q Consensus 256 ~~~a~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (468)
.+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.++-++..+. -+.|+.....+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 5678888888872 234555 3344433333221 23455667777777642 234677777777777888
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch--HHHHHHHHHHcCChHHHHHHH
Q 012234 325 RRISEATEFVSKMP-VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN--YIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 325 ~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 400 (468)
++++.|..+|++.. ..|| ..+|......+.-.|+.++|.+.++++.+++|....+ ....++.|+.. ..++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 88999999999984 5665 6677777888889999999999999999999975443 22334455554 677888876
Q ss_pred H
Q 012234 401 E 401 (468)
Q Consensus 401 ~ 401 (468)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=95.42 E-value=0.3 Score=38.41 Aligned_cols=81 Identities=14% Similarity=-0.009 Sum_probs=32.6
Q ss_pred hcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
..|++++|..+|+-+.- .+..-|..|..++...+++++|+..|......+. -|+..+.....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 34444444444443322 1222333344444444444444444443333211 1222233344444444444444444
Q ss_pred HHHhh
Q 012234 298 FNAMS 302 (468)
Q Consensus 298 ~~~~~ 302 (468)
|....
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44444
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.40 E-value=2.4 Score=39.77 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
..+..+..+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555667777777777766543211 122344556666666677776666666643
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.39 E-value=2.2 Score=39.32 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcC-CCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYG-IQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVW-GALLYG 352 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~-~~l~~~ 352 (468)
..|...+....+..-++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||...| +..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777777888888999888876 5 5677788888887665 46677777777643 344554433 455666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 353 ASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+...++-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 777888888888888766653322 4567777777777777776666555553
No 254
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.27 E-value=2.4 Score=39.03 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=77.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC--HhHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP---DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS--VEHY 314 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~ 314 (468)
..+|..++..+.+.|.++.|...+..+...+..+ .+.....-+......|+..+|...++...+. .+... ....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 3467777778888888888888887776643111 2233333455566677888888877777652 11111 1111
Q ss_pred HHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 315 ACMVGVLSRARRISEATEF-VSKMPVKPSAKVWGALLYGASIS------GDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
..+...+.. ..+..... ........-..++..+..-+... ++.+++...|..+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000012222233333333 7788899999999999998888888887776
Q ss_pred HHc
Q 012234 388 SQA 390 (468)
Q Consensus 388 ~~~ 390 (468)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.25 E-value=1.6 Score=36.91 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhhhhcCC--CCCHhHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS-ACAHSGLVDKAWDIFNAMSGQYGI--QPSVEHYACMVG 319 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~ 319 (468)
+......+...+++..+...+.........+. ........ .+...|+++.+...+.+.... .. ......+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhh
Confidence 33333444444445555555555444322211 11111111 445555555555555555321 10 011222222233
Q ss_pred HHhccCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 320 VLSRARRISEATEFVSKMP-VKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
.+...++.+.+...+.+.. ..+ ....+..+...+...++++.+...+.......|.....+..+...+...|.++++
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 3444555555555555542 122 2445555555566666666666666666666655444455555555555556666
Q ss_pred HHHHHHHHhC
Q 012234 397 DRVREQMKES 406 (468)
Q Consensus 397 ~~~~~~m~~~ 406 (468)
...+.+....
T Consensus 256 ~~~~~~~~~~ 265 (291)
T COG0457 256 LEALEKALEL 265 (291)
T ss_pred HHHHHHHHHh
Confidence 6666555443
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.13 E-value=1.8 Score=36.84 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=77.9
Q ss_pred hccCChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C--CeehHHHHHHHHHh------
Q 012234 53 GQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSD--K--DEVSYSAIISGYMV------ 120 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~------ 120 (468)
.+.|++++|.+.|+.+....+ +....+.-.++.++-+.++++.|+..+++... | .-..|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 355666666666666654431 11233444455555566666666666655543 1 12223333333221
Q ss_pred -cCCHHHHHHHHhhCC---C--CCH------hH-----------H-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--
Q 012234 121 -HGFVEKAMDLFQVMK---R--PGL------ST-----------W-NAVISGLVQNNRHEAVLDLVREMQASGVRPNA-- 174 (468)
Q Consensus 121 -~~~~~~A~~~~~~~~---~--~~~------~~-----------~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-- 174 (468)
..+...+...|..+. + ||+ .. + ..+.+.|.+.|.+..|..-++.|++. .+-+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~ 203 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAV 203 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccch
Confidence 122233333333332 2 332 11 1 23456788889999999999998886 22222
Q ss_pred -HHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 175 -VTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 175 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
..+-.+..+|...|-.++|...-.-+..
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 2445566777777777777766554443
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.09 E-value=1 Score=33.82 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=67.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CeehHHHHHHHHHhcCCHHHHHHHHh
Q 012234 54 QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEKAMDLFQ 132 (468)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 132 (468)
-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+- |. ...|+.......+-
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi----------s~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI----------SKCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G----------GG-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------hhhcchHHHHHHHH
Confidence 3466666666666665543 3333443333333333444444444433221 11 11223333333332
Q ss_pred hCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
.+. .+....+.-+.....+|+-+.-.+++..+...+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 81 ~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 81 KRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred Hhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 222 233344555667777888888888887776533 66777777778888888888888888877777764
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.07 E-value=0.61 Score=41.46 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC-----CCchhH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQAS-GVRP---NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-----DRNIYV 211 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 211 (468)
.|-.+.+++-+.-++.+++.+-+.-... |..| ......++..++...+.++++.+.|+.+.+... -....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555554443322 2122 111223344555566666666666666554211 123356
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccC-------CCcc------hHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKG-------RSLI------IWTAIISAYAAHGDASKAVSLFNEMLN----NGIQPD 274 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 274 (468)
+..|...|.+..++++|.-+..+..+ .|.. +.-.|.-++...|....|.+.-++..+ .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777777776655444322 2221 223344566677777777777666543 343332
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 275 -PVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 275 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3445567777888888888887777654
No 259
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.02 E-value=0.17 Score=40.86 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=32.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..++.+.+.++.|+.-+.++++++|....+...-+.+|.+..++++|++=|+++...
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 344455555556666666666666555555555555566665666666555555443
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=1.3 Score=42.54 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=94.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhC-CCC-----chHHHHHHHHHHHh----CCCHHHHHHHHhhcCC--CCeehHH
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESH-IKM-----DLWICNALIGMYAK----CGSLDYARALLDEMSD--KDEVSYS 112 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~ 112 (468)
+..++....-.||-+.+++.+....+.+ +.- -.-.|+..+..+.. ..+.+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455566666677777777777665532 111 11234444443333 4467778888887776 5544443
Q ss_pred HH-HHHHHhcCCHHHHHHHHhhCCC-----C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 012234 113 AI-ISGYMVHGFVEKAMDLFQVMKR-----P--GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS-L 183 (468)
Q Consensus 113 ~l-i~~~~~~~~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~ 183 (468)
.. .+.+...|++++|++.|+.... + ....+--+.-.+.-..+|++|...|..+.+.. ..+..+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33 3445667888888888886543 1 11234445556777888999999998888753 334445544433 3
Q ss_pred HHccCCh-------hhHHHHHHHHHH
Q 012234 184 FSHFSNL-------KGGKEIHGYAVK 202 (468)
Q Consensus 184 ~~~~~~~-------~~a~~~~~~~~~ 202 (468)
+...|+. ++|..++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3556666 778888877655
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.3 Score=34.37 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=74.0
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCC
Q 012234 44 TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 123 (468)
....++..+...+........++.+...+. .+...++.++..|++.+ ..+....++. ..+.......++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 345677777777889999999999988874 68888999999998764 3444555552 2334445556777777777
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHhC-CChHHHHHHHHH
Q 012234 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVRE 164 (468)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 164 (468)
++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 85 ~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 85 YEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777766643 22233333333 666666666654
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=0.75 Score=36.34 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=19.2
Q ss_pred cCChHHHHHHHhhccCCCcchHHHHH-----HHHHHcCChHHHHHHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGRSLIIWTAII-----SAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~ 267 (468)
.+..++|+.-|..+.+.+.-.|..|. ....+.|+...|...|++.-
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 34444444444444443333332221 12334444444444444443
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.97 E-value=0.059 Score=30.30 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788899999999999999988854
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.34 Score=42.48 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=120.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH----HHHHHHhccCC
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA----CMVGVLSRARR 326 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~ 326 (468)
...|+..+|-..++++.+. .+.|...+...=++|...|+...-...++++.- ...|+...|. .+..++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4568888888889998876 466777888888899999999999999998874 3356654443 44455678999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CcchHHHHHHHHHHcCChHHHHHHH
Q 012234 327 ISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE----NTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 327 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
+++|++.-++.- .+.|.....++...+--.|+.+++.++..+-...-.. -...|...+-.+...+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998873 3447788888888899999999999988765443221 1224667777888889999999999
Q ss_pred HHHHhCCCCCCCc
Q 012234 401 EQMKESGLAKIPG 413 (468)
Q Consensus 401 ~~m~~~~~~~~~~ 413 (468)
+.=+-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8776655555444
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.94 E-value=0.35 Score=41.34 Aligned_cols=107 Identities=8% Similarity=0.172 Sum_probs=73.7
Q ss_pred HHHhhCC--CCCHhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------------
Q 012234 129 DLFQVMK--RPGLSTWNAVISGLVQ-----NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS------------- 188 (468)
Q Consensus 129 ~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------- 188 (468)
..|.... +.|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 3555566666655533 3566777777888888888888888888887765432
Q ss_pred ---ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhc
Q 012234 189 ---NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRF 235 (468)
Q Consensus 189 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 235 (468)
+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3455788999999999999999999999998877643 3333443333
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.94 E-value=0.18 Score=43.80 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..++..++..+...|+++.+.+.+++....+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566777777788888888888888888888888888888888888888888888877765
No 267
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.93 E-value=0.059 Score=42.20 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=50.7
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHH
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 126 (468)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34556666667777777777777666555667777777777777766666666663222 333445555555555555
Q ss_pred HHHHHhhCC
Q 012234 127 AMDLFQVMK 135 (468)
Q Consensus 127 A~~~~~~~~ 135 (468)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 555555543
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.90 E-value=2.1 Score=36.44 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=45.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENTGN---YIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
+..-|.+.|.+..|..-++.+++.-|+.+.+ +..+..+|.+.|-.++|...-+-+ ..+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~ 234 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANY 234 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcC
Confidence 4567889999999999999999987665554 556677899999999998875544 4444
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.83 E-value=2.7 Score=37.25 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=65.3
Q ss_pred hcCCChhHHHHHHHHhhhCC-CCCCCcc------hHHHHHHHhhccC-ChHHHHHHHHHHHHh----C----CCCc----
Q 012234 17 SQGGFYEECKALFREMLNSP-VLRPDGV------TVVSVLQACGQSS-DIVFGMEVHNFVIES----H----IKMD---- 76 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---- 76 (468)
.++|+.+.|...+.+..... ...|+.. .|+.-.. ....+ +++.|..++++..+. + ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999999987433 2233322 1222222 33445 888887777776544 1 1222
Q ss_pred -hHHHHHHHHHHHhCCCHHH---HHHHHhhcCC--CC-eehHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012234 77 -LWICNALIGMYAKCGSLDY---ARALLDEMSD--KD-EVSYSAIISGYMVHGFVEKAMDLFQVMKR 136 (468)
Q Consensus 77 -~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 136 (468)
..++..++.+|...+..+. |.++++.+.. ++ +..+..-+..+.+.++.+++.+.+.+|..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 2355666777776665443 3444444422 22 33444445555555666666666666553
No 270
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.76 E-value=2.1 Score=37.07 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++.....|...|.+.+|.++.++++..+|-+...+..|+..|...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556788999999999999999999999999999999999999998888888877754
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.74 E-value=1.5 Score=35.00 Aligned_cols=132 Identities=10% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcC--CHHHHHHHHhhCCCCCHhH
Q 012234 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG--FVEKAMDLFQVMKRPGLST 141 (468)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~ 141 (468)
.+..+.+.+++|+...+..+++.+.+.|++.....++.--.-+|.......+-.+.... -..-|.+++.++. ..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TA 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hh
Confidence 33444455566666666666666666666666555554333333332222222221111 1233455555543 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666777778888887777664322 1122244566666677766666666665554
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.73 E-value=3.3 Score=38.12 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIE----PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
....+|..++..+.+.|.++.|...+.++...+ +..+.+...-+..+...|+..+|+..++......+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 346788899999999999999999999988865 225677888899999999999999999988884443
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.69 E-value=2.3 Score=35.90 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHH-H
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIIS-A 249 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~-~ 249 (468)
..+......+...+....+...+...... ........+......+...+++..+...+......+. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444555555555555555555554432 2233334444455555566666667766666554211 22233333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCC
Q 012234 250 YAAHGDASKAVSLFNEMLNNGI--QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARR 326 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 326 (468)
+...|+++.|...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7788888888888888755211 112334444444466778899999999888753 233 35677778888888888
Q ss_pred hHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 327 ISEATEFVSKMP-VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 327 ~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
++.|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999998888773 3444 455555556656777899999999999888876
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=2.1 Score=42.60 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=85.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCC
Q 012234 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI--YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (468)
..-+....+...++.|..+-+ ..+..++. .......+-+.+.|++++|...|-+....-- -.-++.-|....+
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHH
Confidence 334444555555555554432 22222221 2223333444556777777666654432110 1223444444555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCC-CCHhHHHHHHHHHhccCChHHHHHHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ-PSVEHYACMVGVLSRARRISEATEFV 334 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~ 334 (468)
..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-..+.+..- . |.- -| ....+..+.+.+-.++|..+-
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 55566666666666654 33344456677777777666555554433 1 211 12 223445555556666666655
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
.+... +......++ -..|++++|.+.++.
T Consensus 487 ~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 55532 333333332 345677777776654
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.53 E-value=4.7 Score=38.73 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=90.7
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIIS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 116 (468)
.+...|..++.---...+.+.+..++..++..- +.--..|......=.+.|..+.+.++|++-... +...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344456666665555556677777787777653 223335666666667889999999999987763 4555665555
Q ss_pred HHH-hcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 117 GYM-VHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 117 ~~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
-+. ..|+.+...+.|+.... .+...|...|..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 443 56788888888887764 44557888888888899999999999998864
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=2.6 Score=35.58 Aligned_cols=203 Identities=13% Similarity=0.061 Sum_probs=103.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
|..-..+|....++++|...+.+..+. ...+...|. ....+++|.-+.+++.+. +--...++.....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666677777777666655421 111111111 112223333333333332 1122344555666777
Q ss_pred cCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccCCHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN---GI--QPDPVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
+|..+.|-..+++.-+ ...+-++++|+++|++...- +- +--...+..+-+.+.+...+++|-.
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7776666555544321 12334566666666654321 10 0011223344455666666766655
Q ss_pred HHHHhhhh---cCCCCCH-hHHHHHHHHHhccCChHHHHHHHHhC---C---CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 297 IFNAMSGQ---YGIQPSV-EHYACMVGVLSRARRISEATEFVSKM---P---VKPSAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 297 ~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.+.+...- ..--++. ..|-..|-.+.-..++..|.+.++.- + ...+..+...|+.+| ..|+.+++..++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 55443210 0111221 23455556667778999999999883 3 223466777788776 667888777665
Q ss_pred H
Q 012234 367 D 367 (468)
Q Consensus 367 ~ 367 (468)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
No 277
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.39 E-value=6.2 Score=39.56 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCH--hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSV--EHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
.+.+.|...+.......++.+.. ..+..+.......+...+|...++... ...+......-+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 45577777777765443443332 223333333333333567777777653 222444444445555577788877777
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+..+-...........-+++++...|+.++|...|+++..
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776554444566777788887778888888888877643
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.36 E-value=7.8 Score=40.55 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (468)
+.-.++.-.+.|.+++|+.++..=.+.--..|.+....+.....+++|.-.|+..-+ ..-.+.+|..+|++
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 334444455566666666665533333334555556666666777777766655322 12245667777788
Q ss_pred HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 292 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
.+|+.+..++.. +-.--..+-..|+..+...++.-+|-++..+....|.. .+..+++...+++|.++...
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 877777766542 11111122255666677777777777776665433321 12233344445555444433
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.36 E-value=3.5 Score=36.52 Aligned_cols=19 Identities=0% Similarity=-0.206 Sum_probs=12.1
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLF 370 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~ 370 (468)
.+.+.++++.|...|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776443
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.14 E-value=0.21 Score=37.24 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.-+....|+.+.|++.|.+++.+-|.++++|+.-+.++.-.|+.++|+.=+.+..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999999999999999999999999888887743
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=14 Score=41.91 Aligned_cols=148 Identities=8% Similarity=-0.003 Sum_probs=87.7
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHhh-cCCCCeehHHHHHHHHHhcCC
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDE-MSDKDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 123 (468)
++..+--+.+.+.+|...++.-..... ......+-.+...|+..++.|...-+... ..++ . ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHHHHHhhcc
Confidence 444455677788888887777311110 11233444455588888888877766653 2222 2 2233445567788
Q ss_pred HHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHH
Q 012234 124 VEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHG 198 (468)
Q Consensus 124 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~ 198 (468)
+..|...|+.+.+ |+ ..+++-++......|.++.++-..+-..... .+....+ +.-+.+-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888888876 33 4567777777777788877777655554431 2222222 333445567777777666654
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=4 Score=35.58 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=80.4
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc----chHHHHHHHHHHcCChH
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----IIWTAIISAYAAHGDAS 257 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 257 (468)
......|+...+..++........ -+......++.+|...|+.+.|..++..+..... .....-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777777776542 2345555678888888888888888888765321 11222334444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC
Q 012234 258 KAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 325 (468)
+...+-.+.-. .| |...-..+...+...|+.+.|...+-.+.++..---|...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444333 34 4555556667777778888877655555433111223344555555555444
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.18 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhh
Q 012234 9 WNSMIAGYSQGGFYEECKALFREML 33 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~ 33 (468)
|..+..+|.+.|++++|+++|++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444445555555555555444
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.81 E-value=15 Score=41.75 Aligned_cols=311 Identities=10% Similarity=0.042 Sum_probs=172.2
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC----CCC--eehHHHHHHHHHhcCCHHHHHHHHhh-CCCCCHhHHHHHHHHHHhCCC
Q 012234 82 ALIGMYAKCGSLDYARALLDEMS----DKD--EVSYSAIISGYMVHGFVEKAMDLFQV-MKRPGLSTWNAVISGLVQNNR 154 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 154 (468)
.+..+-.+++.+.+|.-.+++-. +.+ ..-|..+...|...++++...-+... ...|+. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 45556667888999999998832 111 12334444478888888777666663 333332 223445567899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
+..|...|+.+.+.+ ++...+++.+++.....|.++......+-.....-+.....++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998874 344677888888887888887777655544433212222223333444567777777776665
Q ss_pred ccCCCcchHHHH--HHHHHHcCC--hHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 012234 235 FKGRSLIIWTAI--ISAYAAHGD--ASKAVSLFNEMLNNGIQP--------D-PVTFTAVLSACAHSGLVDKAWDIFNAM 301 (468)
Q Consensus 235 ~~~~~~~~~~~l--~~~~~~~g~--~~~a~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (468)
..+...|... +....+..+ .-.-.+..+.+.+.-+.| + ...|..++....-. +.+. ..+..
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~---~~~~l 1616 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN---SIEEL 1616 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH---HHHHh
Confidence 4455555544 222222221 111112333332221111 0 12233333222111 1111 11111
Q ss_pred hhhcCCCCCH------hHHHHHH---HHHhccCChHHHH-HHHHhCCCCC-----CHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 302 SGQYGIQPSV------EHYACMV---GVLSRARRISEAT-EFVSKMPVKP-----SAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 302 ~~~~~~~p~~------~~~~~l~---~~~~~~~~~~~A~-~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
. +..++. ..|..-+ +.+.+..+.--|. +.+......| -..+|....+.+...|.++.|...+
T Consensus 1617 ~---~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 K---KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred h---ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1 223321 1121111 1222211111111 1111111122 3578999999999999999999998
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
-.+.+..+ +..+...+..++..|+...|+.++++-.....
T Consensus 1694 l~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1694 LNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred Hhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88887774 46788999999999999999999999886554
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.75 E-value=2.9 Score=33.36 Aligned_cols=135 Identities=9% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhh
Q 012234 25 CKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG--SLDYARALLDE 102 (468)
Q Consensus 25 A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 102 (468)
..+.++.+. ..+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+.... -..-|++++.+
T Consensus 13 llEYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 13 LLEYIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 355666666 77899999999999999999998765544 455665566555444432222211 13445555555
Q ss_pred cCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 103 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
+ ...+..++..+...|++-+|+++.+.....+......++.+..+.++..--..+++-....
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 3456778888999999999999998875544445566777777777776666666555543
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.72 E-value=0.17 Score=27.81 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
+|..+...+...|++++|...|+++.+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666667777777777777666665
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.69 E-value=0.15 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999886544
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.58 E-value=2.1 Score=40.18 Aligned_cols=121 Identities=11% Similarity=0.001 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEE--
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE--NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE-- 418 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-- 418 (468)
..+-..+..++.+.|+.++|++.++++.+..|. +..+...|+.+|...+++.++..++.+--+..+++....+|..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455677777888888888888888877654 4456778888888888888888888776544443333322211
Q ss_pred --ECCEEEEEEeCC-CCCCChHHHHHHHHHHHHHHHHcCCcCCcchhh
Q 012234 419 --CSGGLQSFVAKD-TSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463 (468)
Q Consensus 419 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~ 463 (468)
....-..|.... ...+........++.+.+.++-+-.+|.--+|.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 000011111110 111212223345566667777777777665543
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.38 E-value=12 Score=39.40 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
...|+.++...|..++|.++-+.
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 45667777777777777765333
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.26 E-value=2.6 Score=34.24 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH--HH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA--CM 317 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 317 (468)
.+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+...+.++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666777777777777777777665444433 2445566666677777777776666554211111111111 11
Q ss_pred H--HHHhccCChHHHHHHHHhC
Q 012234 318 V--GVLSRARRISEATEFVSKM 337 (468)
Q Consensus 318 ~--~~~~~~~~~~~A~~~~~~~ 337 (468)
. -.+...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1123456777777776665
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.25 E-value=2 Score=36.67 Aligned_cols=183 Identities=8% Similarity=0.088 Sum_probs=109.3
Q ss_pred CChHHHHHHHhhccC-------CCcchHHHHHHHHHHcCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCC
Q 012234 223 GFLHGAQRVFDRFKG-------RSLIIWTAIISAYAAHGDASKAVSLFNEMLN---NGI--QPDPVTFTAVLSACAHSGL 290 (468)
Q Consensus 223 g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~--~p~~~~~~~l~~~~~~~~~ 290 (468)
...++|+.-|++..+ .+..+...++..+.+.|++++.+..+.++.. +.+ .-+..+.+.+++..+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666666543 1224556677778888888888877777642 112 2235567777776666666
Q ss_pred HHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC-------CCC-------CHHHHHHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-------VKP-------SAKVWGALLYG 352 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~-------~~~~~~~l~~~ 352 (468)
.+....+++.-.....-..+ -.|-..|...|...+.+.+..++++++. ... -..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55554444433221111111 2233567777888888888888887762 111 13455556777
Q ss_pred HHHcCChHHHHHHHHHHHhhC--CCCcchHHHH----HHHHHHcCChHHHHH-HHHHHHh
Q 012234 353 ASISGDVELGKFVCDHLFEIE--PENTGNYIIM----ANLYSQAGRWDEADR-VREQMKE 405 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l----~~~~~~~g~~~~A~~-~~~~m~~ 405 (468)
|....+-.....++++++... .|+|...... +.+..+.|+|++|.. +|+..+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 888888888888898887763 3455444332 344667788888764 4454444
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=0.85 Score=35.14 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++.+++..++..+.-+.|..+..-..-+..+...|+|++|.++++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34444444444444444444444444444444444444444444444443
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.93 E-value=8.2 Score=38.61 Aligned_cols=62 Identities=18% Similarity=0.005 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCC-------hHHHHHHHHHHHHhCC
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-------IVFGMEVHNFVIESHI 73 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~ 73 (468)
-.+|--|.|.|++++|.++..+.. .........+...+..+....+ .+....-|++..+...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 356777889999999999996665 2245666778888888876532 2355555665555443
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.85 E-value=0.21 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.79 E-value=1.1 Score=35.29 Aligned_cols=72 Identities=14% Similarity=0.042 Sum_probs=44.6
Q ss_pred hccCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 322 SRARRISEATEFVSKMP-VKPSAKVWGA-LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
.+.++.+++..++..+. ..|....... -...+...|++.+|+.+++.+.+..|..+..-..++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 45667777777777763 4454332222 234456777788888887777666666665555666666665554
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=13 Score=37.46 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=73.5
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 96 (468)
-+.|++++|..-|-+-. .. +.|. .++.-+........-..+++.+.+.|.. +...-..|+.+|.+.++.++-
T Consensus 379 y~Kgdf~~A~~qYI~tI-~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETI-GF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HhcCCHHHHHHHHHHHc-cc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34555555555555443 11 1221 2333333444444445555556666654 444456677888888888777
Q ss_pred HHHHhhcCCCCe-ehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 97 RALLDEMSDKDE-VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
.++.+...+... .-....+..+.+.+-.++|..+-.+... .....+. .+-..+++++|++++..+
T Consensus 451 ~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 777665552111 1244455555566666666655554433 2333333 234567788888887665
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.19 E-value=0.3 Score=26.95 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
|++.++..+. +...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555533 6777777888888888877775
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.01 E-value=0.32 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+|..++.+|...|++++|+..+++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998764
No 299
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.00 E-value=0.25 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHH
Q 012234 378 GNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888888765
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.00 E-value=5 Score=31.60 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=50.1
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHH-HHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY-ACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
.-...++.+++..+++.+. -+.|..... ..-...+.+.|++.+|+.+|+++. ..|....-..|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456678888888888877 445653322 222345678888888888888884 33444444445544444333333
Q ss_pred HHHHHHHHHhhCC
Q 012234 362 GKFVCDHLFEIEP 374 (468)
Q Consensus 362 a~~~~~~~~~~~~ 374 (468)
=.....++.+..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3333444444443
No 301
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.93 E-value=3.1 Score=31.47 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhh-CCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 359 VELGKFVCDHLFEI-EPEN-TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 359 ~~~a~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+.+.+++...+. .|.. ......|+-++.+.|++++++++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444555555442 2221 22233444455555555555555555544
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.84 E-value=7.6 Score=33.34 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=113.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHccCChhhHHHHHHHHHHc-----CCCCchhH
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQA---SGVR--PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-----RYDRNIYV 211 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 211 (468)
...++..+.+.|++++....+.+|+. ..+. -+..+.+.++...+...+.+....+|+.-.+. +-+.--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34455666666666666666666542 1111 12334455555445455544444444432221 11111123
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCC------------C---cchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGR------------S---LIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDP 275 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~ 275 (468)
-..|...|...|.+.+..+++.++.+. + ...|..-|+.|..+.+-.....++++.... ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345666777777777777777665431 1 135666677888777777777777776542 233444
Q ss_pred HHHHHHHHH-----HhccCCHHHHHHHHHHhhhhcCC--CCCHh---HHHHHHHHHhccCC----hHHHHHHHHhCCCCC
Q 012234 276 VTFTAVLSA-----CAHSGLVDKAWDIFNAMSGQYGI--QPSVE---HYACMVGVLSRARR----ISEATEFVSKMPVKP 341 (468)
Q Consensus 276 ~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~--~p~~~---~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~ 341 (468)
.... +|+- ..+.|.+++|..-|-++.+.+.- .|... -|..|...+.+.|- ..+|. -.+..|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 4433 3333 34567777776544344333211 22221 23444455554441 11110 011345
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.......|+.+|.. +++.+-++++..-...--++|..
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHH
Confidence 56667777777754 35555555544433332334433
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.63 E-value=0.52 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
+++.|...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344445555555555555555554443
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.62 E-value=6.2 Score=35.17 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--CC----CHHHHHHHHhhcCC
Q 012234 58 IVFGMEVHNFVIESHIKMDLWICNALIGMYAK--CG----SLDYARALLDEMSD 105 (468)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~ 105 (468)
++....+++.+.+.|..-+..+|-+....... .. ...+|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 45667888899999988777666553333332 11 24455555655554
No 305
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.57 E-value=12 Score=35.24 Aligned_cols=97 Identities=6% Similarity=-0.050 Sum_probs=62.8
Q ss_pred CCCHhH-HHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 308 QPSVEH-YACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGAS--ISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 308 ~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.|+..+ -+.+++.+-+.|-..+|.+.+..+. .+|+...|..++..-. ..-+...+...++.+..-...++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 344433 3556677777888888888887773 3456677777765432 2334677777887777664467777776
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 012234 383 MANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
....-...|+.+.+-.++.+..
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhhccCCCcccccHHHHHHH
Confidence 6666667777777766665543
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=7.5 Score=32.70 Aligned_cols=81 Identities=10% Similarity=-0.027 Sum_probs=44.1
Q ss_pred CChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-------HHHHHHHHHH
Q 012234 325 RRISEATEFVSKMP-----VKPS---AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN-------YIIMANLYSQ 389 (468)
Q Consensus 325 ~~~~~A~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~l~~~~~~ 389 (468)
.++++|+..|++.. ...+ ...+.-+...-...+++.+|+.+|++......+|+-. +..-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45666666665552 1111 1233333444566789999999999988775544432 2222333333
Q ss_pred cCChHHHHHHHHHHHh
Q 012234 390 AGRWDEADRVREQMKE 405 (468)
Q Consensus 390 ~g~~~~A~~~~~~m~~ 405 (468)
..+.-.+.+.+++-.+
T Consensus 208 ~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE 223 (288)
T ss_pred cccHHHHHHHHHHHHh
Confidence 3555555555555544
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.56 E-value=2 Score=34.96 Aligned_cols=60 Identities=7% Similarity=0.079 Sum_probs=30.8
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 012234 44 TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEM 103 (468)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (468)
.+..+...+.+.|+.+.|.+.|..+.+....+. ...+-.+|+.....|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445555555556666666666655555433322 223344555555555555555554443
No 308
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.54 E-value=7.1 Score=32.41 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-+...-....-.|-...|-.+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 467777777777888888888888777653222222222222 23345777777766655553311122122222211
Q ss_pred HhccCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------cchHHHHHHHHHHcCC
Q 012234 321 LSRARRISEATEFV-SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-------TGNYIIMANLYSQAGR 392 (468)
Q Consensus 321 ~~~~~~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~ 392 (468)
.+.-++.+|..-+ ++.. ..|..-|...+-.+.- |++. .+.+++++..-..++ ..+|..|+.-|...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233555565433 3332 3333333333322211 1111 112222222222221 3478889999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 012234 393 WDEADRVREQMKESGL 408 (468)
Q Consensus 393 ~~~A~~~~~~m~~~~~ 408 (468)
.++|..+|+-.+...+
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999987766443
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.53 E-value=2.9 Score=36.47 Aligned_cols=78 Identities=8% Similarity=0.028 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCCchhHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-----NRYDRNIYVATA 214 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 214 (468)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677788888888888888888888764 55777888888888888988888888887765 567777666554
Q ss_pred HHHH
Q 012234 215 IIDT 218 (468)
Q Consensus 215 l~~~ 218 (468)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=1.9 Score=37.65 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=73.7
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC-Cc-----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SL-----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
.|.+....+...++..-....+++.++..+-++... +. .+-...++.+. .-++++++.++..=+.-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344555666667777777778888888888777642 21 12222233332 336778888888888899999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877754
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.46 E-value=0.48 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 381 IIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..++.+|.+.|++++|.+.++++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.33 E-value=3.9 Score=29.04 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+++.+++...++.+++..+.+ +..+.+.|++++|..+.+...-||...|-+|.. .+.|.-+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 445555555555555555443 335677888888888888887788888877654 46677777777
Q ss_pred HHHHHHHCCCCCCHHHH
Q 012234 161 LVREMQASGVRPNAVTI 177 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~ 177 (468)
.+.+|...| .|...+|
T Consensus 90 rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777777766 4554444
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=19 Score=36.11 Aligned_cols=101 Identities=8% Similarity=-0.021 Sum_probs=57.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCC---CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRP---DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
|..+.+.+.+++|+++.+.-. |..| -.......|..+...|+++.|-...-.|... +..-|.--+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 566778888999998887654 2234 2344667777777788888887777666542 33444444444444
Q ss_pred CCCHHHHHHHHhhcCC-CCeehHHHHHHHHHh
Q 012234 90 CGSLDYARALLDEMSD-KDEVSYSAIISGYMV 120 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 120 (468)
.++......++=.-.. -++..|..++..+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4444332222111111 144556666665554
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.81 E-value=0.61 Score=41.08 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=77.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISG 357 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 357 (468)
-..-|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|+.=..... .+.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999877 4456 77888888888999988887776554442 1111334555555555678
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
+..+|.+-++.++++.|.+... -..|.+.....++.-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL----KKSLARINSLRERKIA 217 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhhhHH
Confidence 8999999999999999986543 3444444445554443
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.69 E-value=0.4 Score=25.88 Aligned_cols=25 Identities=16% Similarity=-0.069 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 346 WGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
+..+..++...|++++|.+.|++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556778889999999999999875
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.66 E-value=5.4 Score=37.24 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=79.1
Q ss_pred HHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCh
Q 012234 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDV 359 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 359 (468)
|.--...|+.-.|-+-+......+.-.|+.... ....+...|.++.+...+.... +.....+...++......|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 333445577666655444444332333433322 2334566788888887777663 344556777778888888888
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
++|....+.++.....++.+...-+..-...|-++++...|+++.....
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 8888888888777666666665555555666778888888888765443
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.61 E-value=0.56 Score=27.05 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++..|+.+|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998763
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.06 E-value=0.78 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+|..++.+|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998876
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.53 E-value=4.2 Score=33.37 Aligned_cols=76 Identities=13% Similarity=-0.045 Sum_probs=48.2
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-------CCeehHHHHHHHHHhcCC
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-------KDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~ 123 (468)
.+++.|+ +.|++.|-.+...+.--++.....|...|. ..+.+++..++.+..+ .|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455555 556666666666554445555555555555 5667777777665542 356677778888888877
Q ss_pred HHHHH
Q 012234 124 VEKAM 128 (468)
Q Consensus 124 ~~~A~ 128 (468)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77764
No 320
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.47 E-value=3.2 Score=29.28 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666677777777888999999999999999999999999988775422 24445655553
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=6.2 Score=37.99 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHH
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (468)
..+.++..+.+.|-.++|+++-- |+.- -.....+.|+++.|.++..+. .+..-|..|..+..+.+++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 44556666666666666665421 1110 112234566777776665543 3455677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 233 (468)
.+.|..... +..|+-.+...|+.+....+-....+.|. . |....+|...|+++++.+++.
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 777766543 34555556666666655555555555442 1 122233444555555555544
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.18 E-value=25 Score=34.84 Aligned_cols=274 Identities=10% Similarity=0.059 Sum_probs=157.0
Q ss_pred HHHHHHHHhhCCC-CCHhHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC--
Q 012234 124 VEKAMDLFQVMKR-PGLSTWNAVISG-----LVQNNRHEAVLDLVREMQA-------SGVRPNAVTISSIFSLFSHFS-- 188 (468)
Q Consensus 124 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 188 (468)
...|.+.++.... .++..-..+..+ +....+.+.|+.+|+.+.. .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777665 333333333322 4456789999999999876 44 2224455666666543
Q ss_pred ---ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhccCCC-cchHHHHHHHHHH----cCChHHH
Q 012234 189 ---NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGFLHGAQRVFDRFKGRS-LIIWTAIISAYAA----HGDASKA 259 (468)
Q Consensus 189 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~g~~~~a 259 (468)
+.+.|..++....+.| .|+.......+..... ..+...|..+|....+.+ +.++-.+...|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677899998888887 3444333222222222 245778999998877643 3333333333322 3467889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH---Hhc----cCChHHHHH
Q 012234 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV---LSR----ARRISEATE 332 (468)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~~~~~~A~~ 332 (468)
..++++.-+.| .|...--...+..+.. +..+.+...+..+... |.+.....-..++.. ... ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999888887 3332222233333444 6666666555554432 322211111111111 111 225566667
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-C--ChHHHHHHHHHHHh
Q 012234 333 FVSKMPVKPSAKVWGALLYGASIS----GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA-G--RWDEADRVREQMKE 405 (468)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 405 (468)
++.+....-+......+...|..- .+++.|...+.++.... ......++.++-.- | ++..|.+++++...
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 777665555666666666555432 35788888888877766 66667777766542 1 26788888887766
Q ss_pred CC
Q 012234 406 SG 407 (468)
Q Consensus 406 ~~ 407 (468)
.+
T Consensus 538 ~~ 539 (552)
T KOG1550|consen 538 ED 539 (552)
T ss_pred cC
Confidence 44
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.11 E-value=4.1 Score=29.11 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 5556666676777889999999999999999999999999988876533 333366666543
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.96 E-value=0.96 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 381 IIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
..|+.+|...|+.+.|.+++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688999999999999999999986543
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.83 E-value=1.5 Score=38.85 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=55.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 325 (468)
..-|.++|++++|+..|...+.. .| |.+++..-..+|.+...+..|+.-....... -...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 34689999999999999987764 55 8888888888999998888777766665531 123455666555
Q ss_pred ChHHHHHHHHh
Q 012234 326 RISEATEFVSK 336 (468)
Q Consensus 326 ~~~~A~~~~~~ 336 (468)
....++....+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444444333
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.73 E-value=12 Score=36.13 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=97.7
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (468)
-.|+++.|..++..+.++ ..+.++.-+.++|-.++|+++- +|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346666666655555532 2344555566667666666542 232211 1223567888888877665
Q ss_pred hhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 301 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
.. +..-|..|.++....+++..|.+.|.+.. -|..|+-.+...|+-+....+-....+.+..|..
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-- 727 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-- 727 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH--
Confidence 43 45678899999999999999999988764 3556677777788877776776666666665543
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 012234 381 IIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
..+|...|+++++.+++.+
T Consensus 728 ---F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ---FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHcCCHHHHHHHHHh
Confidence 2357788999999888654
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.58 E-value=11 Score=30.94 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=71.2
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISG 357 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 357 (468)
+...|++++|..-|...... +++. ...|..-..++.+.+.++.|++-..+. .+.|. ......-..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45677777777777777652 2332 223333345566777777777666555 33442 223333345677778
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH--HHHHHHHhCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD--RVREQMKESG 407 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~m~~~~ 407 (468)
.+++|++-|+++.+.+|....+-...++.--....-.+.+ +++.++++.|
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998877655555444433322222222 3455555554
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.53 E-value=1.3 Score=27.50 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
..+.-++.+.|++++|.+..+.+++.+|+|..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4466778899999999999999999999886543
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.50 E-value=18 Score=32.34 Aligned_cols=134 Identities=14% Similarity=0.249 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----ChhhHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCh
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSH--FS----NLKGGKEIHGYAVKNRY---DRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 225 (468)
+++.+.+++.|.+.|+.-+..+|......... .. ...++..+|+.|++.-. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788888888888888777654333322 11 24556677777776431 1222333333221 11111
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHh
Q 012234 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV--TFTAVLSACAHSGL--VDKAWDIFNAM 301 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 301 (468)
+. -.+.+..+|+.+.+.|+..+.. ....++..+..... ...+..+++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245556666666666554422 22223322221111 34566677777
Q ss_pred hhhcCCCCCHhHHHHHH
Q 012234 302 SGQYGIQPSVEHYACMV 318 (468)
Q Consensus 302 ~~~~~~~p~~~~~~~l~ 318 (468)
.+. |+++....|..+.
T Consensus 209 ~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHc-CCccccccccHHH
Confidence 665 7776665555443
No 330
>PRK09687 putative lyase; Provisional
Probab=88.40 E-value=17 Score=32.13 Aligned_cols=9 Identities=11% Similarity=0.589 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 012234 157 AVLDLVREM 165 (468)
Q Consensus 157 ~a~~~~~~m 165 (468)
++...+..+
T Consensus 90 ~a~~~L~~l 98 (280)
T PRK09687 90 NVFNILNNL 98 (280)
T ss_pred HHHHHHHHH
Confidence 344444443
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.19 E-value=4.6 Score=28.86 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=34.3
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.+..-|++.+..+.+.+|.+.+++..|.++++-+.....+....|-.++.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 34467888899999999999999999999998888776554446655543
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.08 E-value=4.3 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
+..-|++.+..+.+++|.+.+|+..|.++++-......++...|-.+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 346788888888888888888888888888877755443444554443
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.03 E-value=34 Score=35.02 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHhhccC----CCc-------chHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKG----RSL-------IIWTAIIS-AYAAHGDASKAVSLFNEMLNN----GIQPDPVTFTAVLS 283 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~ 283 (468)
....++.+|..++.++.. ++. ..|+.+-. .....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345677777777665432 221 23444432 334567788888877776553 11223344555556
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHh---HHHHHH--HHHhccCCh--HHHHHHHHhC-----CCCC----CHHHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVE---HYACMV--GVLSRARRI--SEATEFVSKM-----PVKP----SAKVWG 347 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~--~~~~~~~~~--~~A~~~~~~~-----~~~~----~~~~~~ 347 (468)
+..-.|++++|..+.....+. .-.-+.. .|..+. ..+...|+. .+.+..+... ..+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666678888887777665432 1112222 222222 234455532 2222233222 1111 223334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh----CCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI----EPENTG---NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
.++.++.+ .+.+..-.....+. .|.... .+..|+.++...|+.++|...++++......+.+...|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44444444 33333333333332 222211 223677888888888888888888877666554554444
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.82 E-value=13 Score=29.82 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
+..+|.++......+-+-..+-+-....-..|.-+-.+.|++..|.+.|..+..+
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 3445666665555555444332222333344444555666666666666666554
No 335
>PRK09687 putative lyase; Provisional
Probab=87.76 E-value=19 Score=31.87 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 444444445555555554 33444433333322 1 122344555555553 4555555554
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.61 E-value=0.39 Score=37.52 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=48.7
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (468)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455566667777777777777666556667777777777777766777666663222 2223444555555555555
Q ss_pred HHHHHH
Q 012234 260 VSLFNE 265 (468)
Q Consensus 260 ~~~~~~ 265 (468)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555444
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.42 E-value=34 Score=34.39 Aligned_cols=167 Identities=8% Similarity=0.017 Sum_probs=84.0
Q ss_pred hhccCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKM---DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 128 (468)
+.+.+.+++|++.-+... |..| -..+....|..+...|++++|-...-.|...+..-|..-+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334455566665544322 2222 23456667777777888888887777777777766666666666665554322
Q ss_pred HHHhhCCC-CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 012234 129 DLFQVMKR-PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 129 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (468)
.++-.-.. .+...|..++..+.. .+... |.+.+.. .++ ..|+.+...-+.. .+..+. .-
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~~~~~----F~e~i~~-Wp~--~Lys~l~iisa~~----------~q~~q~--Se 503 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-SDVKG----FLELIKE-WPG--HLYSVLTIISATE----------PQIKQN--SE 503 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-HHHHH----HHHHHHh-CCh--hhhhhhHHHhhcc----------hHHHhh--cc
Confidence 22211111 234466666666655 22222 2222221 122 2222221110000 001110 11
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccCCCc
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 240 (468)
+......|+..|...+++++|+.++-...+.++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 122333478888888888888888887776543
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.14 E-value=38 Score=34.67 Aligned_cols=215 Identities=13% Similarity=0.040 Sum_probs=109.5
Q ss_pred HccCChhhHHHHHHHHHHcCCCCchh-------HHHHHH-HHHHhcCChHHHHHHHhhccC--------CCcchHHHHHH
Q 012234 185 SHFSNLKGGKEIHGYAVKNRYDRNIY-------VATAII-DTYAKTGFLHGAQRVFDRFKG--------RSLIIWTAIIS 248 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~ 248 (468)
....++.+|..++.++...-..|+.. .++.|- ......|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45566777777776666543232221 122221 223346777888777665443 34456777778
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHhccCC--HHHHHHHHHHhhhhcCC-CC----CHhHHHH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV-----LSACAHSGL--VDKAWDIFNAMSGQYGI-QP----SVEHYAC 316 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-----~~~~~~~~~--~~~a~~~~~~~~~~~~~-~p----~~~~~~~ 316 (468)
+..-.|++++|..+..+..+..-.-+...+..+ ...+...|. .++.+..|......+.. .| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999998887776553222233333222 223455663 23333344333322111 11 1233344
Q ss_pred HHHHHhccCChHHHHHH----HHhCC-CCCC--HHH--HHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCcchHHHH--
Q 012234 317 MVGVLSRARRISEATEF----VSKMP-VKPS--AKV--WGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIM-- 383 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~----~~~~~-~~~~--~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l-- 383 (468)
+..++.+ .+.+..- +.-.. ..|. ... +..|+......|+.+.|...+.++.... +.....|...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333322 22111 2222 222 2356777888999999999988887763 2212222221
Q ss_pred -H--HHHHHcCChHHHHHHHHH
Q 012234 384 -A--NLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 384 -~--~~~~~~g~~~~A~~~~~~ 402 (468)
+ ..-...|+..+|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 123346777777766554
No 339
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.76 E-value=1.4 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+..++.++...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 340
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.52 E-value=10 Score=37.68 Aligned_cols=184 Identities=12% Similarity=0.198 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchh
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA----------VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 210 (468)
+...++-.|....+++..+++.+.+... ||. ..|...++---+-|+-++|..+.-.+++..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455556666777777777777777652 322 123333333344566666666665555533222222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhc
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT---FTAVLSACAH 287 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~ 287 (468)
. ||-+|++ |+.|. +.+.|...+..+.|.++|++..+ +.|+..+ +..|+.+
T Consensus 280 m-------~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 280 M-------YCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred e-------eeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 1 2222321 11111 11223334455677777777665 3555443 2223322
Q ss_pred cCC-HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 288 SGL-VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 288 ~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.|. ++...+ +.. .--.|-..+++.|..++..++++-. ..+.+-.-++++.+|++..
T Consensus 333 aG~~Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 221 111111 110 0011233456777777666665432 2334445567788888888
Q ss_pred HHHHhhCCCCc
Q 012234 367 DHLFEIEPENT 377 (468)
Q Consensus 367 ~~~~~~~~~~~ 377 (468)
+.|.++.||.-
T Consensus 390 e~mfKLk~P~W 400 (1226)
T KOG4279|consen 390 EMMFKLKPPVW 400 (1226)
T ss_pred HHHhccCCcee
Confidence 88888877643
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.50 E-value=16 Score=29.82 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcch--HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLII--WTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
|.......|.+++|+..++....++-.. ...-...+...|+-++|..-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455556666666666666665554332 2333445666666666666666666553
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.20 E-value=6 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...++-++.+.|++++|.+..+.+.+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4567889999999999999999998743
No 343
>PRK10941 hypothetical protein; Provisional
Probab=86.19 E-value=5.4 Score=34.91 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..+.+-.+|.+.++++.|....+.++...|+++.-+.--+-.|.+.|.+..|..=++..++.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 446666788999999999999999999999999888889999999999999999888876643
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.34 E-value=21 Score=29.86 Aligned_cols=157 Identities=10% Similarity=-0.058 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccCCCcc-hHHHH--HHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-IWTAI--ISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSA 284 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~ 284 (468)
+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+ .-++.-.|++.-|.+=+...-+.. -.|=...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 456777777777888888888888877765442 22222 122334577777776665554432 122222333222
Q ss_pred HhccCCHHHHHHHH-HHhhhhcCCCCCHhHHHHH-HHHHhccCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHHc
Q 012234 285 CAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACM-VGVLSRARRISEATEFVSKMPV------KPSAKVWGALLYGASIS 356 (468)
Q Consensus 285 ~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~ 356 (468)
...-+..+|..-+ ++.. + .|..-|... +..|.-.=..+.+.+-...-.. ..-..||--|..-+...
T Consensus 177 -E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2233455554433 3333 2 232333322 2222211112222222221110 01145677777888888
Q ss_pred CChHHHHHHHHHHHhhC
Q 012234 357 GDVELGKFVCDHLFEIE 373 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~ 373 (468)
|+.++|..+|+-+...+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999988888777654
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.21 E-value=3.2 Score=33.28 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+++|+.-|++++.++|+...++.+++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456667777777778877777777777777654
No 346
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=85.11 E-value=33 Score=32.04 Aligned_cols=103 Identities=17% Similarity=0.053 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEE
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 424 (468)
-...|+.-|...|+..+|....+++---.-.+..++..++.+..+.|+-..-+.+++..-+.|+ |+.++.-+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl--------IT~nQMtk 582 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL--------ITTNQMTK 582 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc--------eeHHHhhh
Confidence 3456788899999999998887764333334667788999999999987777777777777665 22222222
Q ss_pred EEEeCCCC----CCChHHHHHHHHHHHHHHHHcCC
Q 012234 425 SFVAKDTS----GDKSEQIYLILERLLGLMREEGY 455 (468)
Q Consensus 425 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~ 455 (468)
.|...+.. .-.+...++.++.....-.++|+
T Consensus 583 Gf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 583 GFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred hhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 22211111 11234446667777777778884
No 347
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.02 E-value=57 Score=34.68 Aligned_cols=257 Identities=13% Similarity=0.017 Sum_probs=152.2
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHhhcCCCCeehHHHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGY 118 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~~~ 118 (468)
+|...-...+..+.+.+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+..+|+..-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 77777777778887777644 5555555553 34555555666666554322 1122222334446666666666666
Q ss_pred HhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh-HHHHH
Q 012234 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG-GKEIH 197 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~ 197 (468)
...+.. ....+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 654321 12345556667887777777777777665432 222222 4555555666777777765443 33444
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ-RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
..+.+ .++..+-...+.++.+.|..+.+. .+...+..++..+-...+.++...+. +++...+..+.+ .|+..
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~ 853 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLD 853 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHH
Confidence 44443 456778888899999998876553 34455556676677777788887775 456666666654 46666
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
.-...+.++.+......+...+..+.+ .+|..+-.....
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~ 892 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARR 892 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHH
Confidence 666677777775434566666766664 245444433333
No 348
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=7.6 Score=32.91 Aligned_cols=61 Identities=13% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..+-.++...|++-++++....++...|.|..+|..-+.+.+..=+..+|.+=|....+..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344566678999999999999999999999999999999888888888888888776643
No 349
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.32 E-value=3.2 Score=29.22 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...+++..+.+|+|......++..+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344556666778888888888888888888888888777776654
No 350
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=84.30 E-value=1.3 Score=33.00 Aligned_cols=36 Identities=50% Similarity=0.768 Sum_probs=26.2
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcc
Q 012234 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460 (468)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~ 460 (468)
+++|+.. +.|+.++.+||.. ++...+...|+.|+.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~ 37 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTK 37 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhh
Confidence 5788876 9999999999987 3444556666666544
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.82 E-value=11 Score=31.05 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc---CCCCchhHHHHHHHHHHhcCChHHH
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN---RYDRNIYVATAIIDTYAKTGFLHGA 228 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 228 (468)
-+.|.+.|-++...+.--++ .....+..|....+.+++..++..+.+. +-.+++.++.+|+..|.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555555555433333 3333333344455666666666655542 2245556666666666666665554
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.81 E-value=3.7 Score=34.54 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=36.8
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHh-HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVE-HYACMVGVLSRARRISEATEFVSKM-PVKPSAK-VWGALLYGASISGDVEL 361 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~ 361 (468)
|.....+..|...|.+.. -+.|+.. .|+.=+..+.+..+++.+..=-.+. ...||.. ....+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 344445555555555544 3345442 2333344444455555544333222 2334332 22223333444455555
Q ss_pred HHHHHHHHHh
Q 012234 362 GKFVCDHLFE 371 (468)
Q Consensus 362 a~~~~~~~~~ 371 (468)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555533
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.62 E-value=8.9 Score=31.92 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCC--CchHHHHHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIK--MDLWICNALIG 85 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 85 (468)
|.+..++.+.+.+..++|+...++-. +.. |.|...-..++..++-.|++++|..-++..-+..+. +-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qV-kak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQV-KAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHH-hcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34555667777777777777777665 222 345555666777777777777777666665554322 23345555554
Q ss_pred H
Q 012234 86 M 86 (468)
Q Consensus 86 ~ 86 (468)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.62 E-value=5.7 Score=32.97 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=45.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 314 YACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
.+..+..+.+.+..++|+...++- +.+| |..+-..++..++-.|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344556677788888888777544 4555 455556677888888999998888888777777643
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.23 E-value=24 Score=28.94 Aligned_cols=87 Identities=8% Similarity=0.034 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-CCHhHHH-----HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012234 116 SGYMVHGFVEKAMDLFQVMKR-PGLSTWN-----AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189 (468)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 189 (468)
..++..|++++|+..++.... +.-..+. .|.+.....|.+|+|+..++.....+. .......-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 345556666666666665442 2222222 233455666666666666655543321 11122333455666666
Q ss_pred hhhHHHHHHHHHHcC
Q 012234 190 LKGGKEIHGYAVKNR 204 (468)
Q Consensus 190 ~~~a~~~~~~~~~~~ 204 (468)
-++|+.-|+...+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666654
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.83 E-value=10 Score=31.91 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCChH-------HHHHHHHHHHhhC--CC----CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 344 KVWGALLYGASISGDVE-------LGKFVCDHLFEIE--PE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
..+..+.+.|...|+.+ .|.+.|.++.+.. |. .......++..+.+.|++++|.+.|.++...+-.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34555666677777744 4555555555543 22 2345667889999999999999999999876643
No 357
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.57 E-value=9.5 Score=33.62 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=63.5
Q ss_pred eehHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHh-----HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKR-PGLS-----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
..+...++..-....+++.++..+-+++. |+.. +-.++++.+. .-++++++.++..=++-|+-||..+++.++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 33444444444445566666666666553 2211 1222333333 345778888888888889999999999999
Q ss_pred HHHHccCChhhHHHHHHHHHHcC
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
..+.+.+++..|.++.-.|+...
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999988888877777654
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.34 E-value=42 Score=31.07 Aligned_cols=136 Identities=10% Similarity=0.137 Sum_probs=80.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH---hccCChH
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL---SRARRIS 328 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~ 328 (468)
..++++.-..++++ .+--..++..+-..+...|+.+.|..++++..-.++ .++......+ ...|.
T Consensus 22 ~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~-- 89 (360)
T PF04910_consen 22 QSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGN-- 89 (360)
T ss_pred HccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCc--
Confidence 33455554444422 133455666677777888888888777777652110 0000000000 00000
Q ss_pred HHHHHHHhCC--CCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHH-HcCChHHHHHHHH
Q 012234 329 EATEFVSKMP--VKPSAKVWGAL---LYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYS-QAGRWDEADRVRE 401 (468)
Q Consensus 329 ~A~~~~~~~~--~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~ 401 (468)
.++. ..-|...|.++ +..+.+.|-+..|.+..+-+..++|. ||-.....++.|+ ++++++--+++.+
T Consensus 90 ------~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 90 ------CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred ------cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 0111 12244445444 56778899999999999999999988 8877777777766 5778887888887
Q ss_pred HHHh
Q 012234 402 QMKE 405 (468)
Q Consensus 402 ~m~~ 405 (468)
....
T Consensus 164 ~~~~ 167 (360)
T PF04910_consen 164 SPLA 167 (360)
T ss_pred hHhh
Confidence 7655
No 359
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.31 E-value=1.2 Score=39.49 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=55.7
Q ss_pred ccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 323 RARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
..|.++.|++.|.... .. +....|..-..++.+.++...|++-+..+.+++|+...-|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3455666666555442 22 233444444455666677777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCC
Q 012234 401 EQMKESGLAK 410 (468)
Q Consensus 401 ~~m~~~~~~~ 410 (468)
....+.++..
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7777766643
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.15 E-value=48 Score=31.69 Aligned_cols=170 Identities=9% Similarity=0.077 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (468)
....+++..+.....+.-.+.+..++.. .+-..+..+++.|..+ ..+.-..+|+++.+..+ |......-+..+..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHH
Confidence 3334455555555555555555555443 3334555666666665 34555666666655422 22222222222333
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCC------HhHHHHHHHHHhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcC
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQPS------VEHYACMVGVLSRARRISEATEFVSKMP----VKPSAKVWGALLYGASISG 357 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g 357 (468)
.++.+.+..+|.++..+ +-|. ...|..|.... ..+.+....+..++. ...-...+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 35666666666665542 2221 12333333211 234444555544442 1122333444445556666
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
++.+|++++..+++.+..|.-+...++.-
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 67777777776666655444444444433
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.06 E-value=2.6 Score=21.77 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
..|..+...+...|+++.|...+++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356778888999999999999987654
No 362
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.23 E-value=65 Score=32.58 Aligned_cols=224 Identities=9% Similarity=-0.080 Sum_probs=117.8
Q ss_pred cCChhhHHHHHHHHHHcC-CCCch--hHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHHHHHHHcCChHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNR-YDRNI--YVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAAHGDASKAVS 261 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 261 (468)
..+.+.|...+....... ..+.. .+...+.......+..+++...+...... +......-+..-...++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345577777777654432 22111 12233333333332355666666655432 33344444445557778877777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc-----------CCCCC------HhH--------HHH
Q 012234 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-----------GIQPS------VEH--------YAC 316 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~p~------~~~--------~~~ 316 (468)
.+..|-... .-...-.--+.+++...|+.++|..+|+.+.... |.++. +.. -..
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 412 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMA 412 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHH
Confidence 777764422 1223333446666666788888888777754211 11100 000 011
Q ss_pred HHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCcchHHHHHHHHHHcCCh
Q 012234 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE---PENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 393 (468)
-+..+...|+...|...+..+....+......+.......|..+.++.........+ -.-|..|...+..+.+.-.+
T Consensus 413 ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 413 RVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 223445667777777766665333455555666666677888888777665443321 11233466666666666666
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 012234 394 DEADRVREQMKESGLAKI 411 (468)
Q Consensus 394 ~~A~~~~~~m~~~~~~~~ 411 (468)
+.++-.--.-.++++.|.
T Consensus 493 ~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 493 PQSYAMAIARQESAWNPK 510 (644)
T ss_pred CHHHHHHHHHHhcCCCCC
Confidence 666654334446666554
No 363
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.92 E-value=25 Score=30.58 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=49.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH---
Q 012234 146 ISGLVQNNRHEAVLDLVREMQAS--GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--- 220 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 220 (468)
|.+++..++|.+++.+.-+--+. .++|. ....-|-.|++.+.+..+.++-....+..-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56777778888877766554432 23333 344445557777777777777666665433334444555555544
Q ss_pred --hcCChHHHHHHH
Q 012234 221 --KTGFLHGAQRVF 232 (468)
Q Consensus 221 --~~g~~~~a~~~~ 232 (468)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 346666666554
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.88 E-value=17 Score=34.14 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=70.0
Q ss_pred HHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 251 AAHGDASKAVS-LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 251 ~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
...|+...|-+ ++.-+....-.|+...+...| ....|+++.+.+.+....+ -+.....+..++++.....|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555544 444444443345544444433 4567788887777766653 233445566777777777888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
|..+-.-|- .-.++.+...........|-++++.-.+++...++|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 877776662 1123333333333444556677777777777777655
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=80.31 E-value=50 Score=30.73 Aligned_cols=150 Identities=18% Similarity=0.256 Sum_probs=91.7
Q ss_pred cCChHHHHHHHhhccCC----CcchHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHH
Q 012234 222 TGFLHGAQRVFDRFKGR----SLIIWTAIISA-YAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVD 292 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~----~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~ 292 (468)
.|+..++.+.+..+... ....+-.|+.+ .....+...|+++|+...-. -|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46777777777766542 23445555554 34456788888888876542 34332 3334444567778888
Q ss_pred HHHHHHHHhhhhcCCCCCHhHHH-HHHHHHhcc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 293 KAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRA---RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 293 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
++..+-.....++.-.|-..-|. .+...+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 87766666655544445433332 223333332 34555566666764333456888888888889999988888888
Q ss_pred HHhhC
Q 012234 369 LFEIE 373 (468)
Q Consensus 369 ~~~~~ 373 (468)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88875
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.09 E-value=4.1 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999888888888777766543
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.51 E-value=5.8 Score=23.43 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=14.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 368
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.47 E-value=69 Score=31.78 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHhCCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQA-GRWDEADRVREQMKESGL 408 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 408 (468)
+.+.|...+.++.+.+++ .+...+...+.-. ++++.+.-.+..+...|.
T Consensus 379 ~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 556666666666665522 2222222222211 555555555555555544
No 369
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=79.37 E-value=56 Score=30.66 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHh
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK 336 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 336 (468)
..|+.-|...|+..+|.+.++++-- .+-....++.+++....+.|+-...+.+++.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~ 568 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKE 568 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3466667777777777777766532 1122345566666666666665544444443
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.20 E-value=21 Score=25.59 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012234 216 IDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279 (468)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (468)
+..+.+.|+|++|..+.+....||...|.++.. .+.|-.+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667888888888888887788877776654 35666677777777777765 44444443
No 371
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.83 E-value=65 Score=30.56 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHh---CC-CCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CeehHHHHHHHHHhcCCHHHHHHHHh
Q 012234 58 IVFGMEVHNFVIES---HI-KMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEKAMDLFQ 132 (468)
Q Consensus 58 ~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 132 (468)
.++...++...... ++ ..+......++... .|+...++.+++..... ... ..+....++.
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~ 217 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQ 217 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHh
Confidence 34555555554432 32 34444444444432 57777777666654211 000 1222222222
Q ss_pred hC---CCCCHhHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012234 133 VM---KRPGLSTWNAVISGLVQ---NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188 (468)
Q Consensus 133 ~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 188 (468)
.. ...+...+..+++++.+ .++++.|+.++..|.+.|..|....-..+..++...|
T Consensus 218 ~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 218 KRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred hhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 21 11222334445555554 4789999999999999988887665555555544444
No 372
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.70 E-value=31 Score=26.88 Aligned_cols=51 Identities=14% Similarity=-0.083 Sum_probs=23.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 012234 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK 106 (468)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 106 (468)
.++.+++..+++.|.-..+. ....-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443322 1111111223344556666666666655543
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.61 E-value=6.4 Score=26.63 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=32.7
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcc---hHHHHHHHHHHcCChHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTG---NYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 399 (468)
...+.+.|+..++++++..++.+. ++..|+.+|+..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888887655443 445666778888888887775
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.34 E-value=44 Score=28.38 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=11.3
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 012234 357 GDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~ 375 (468)
.+.-.+...+++..+.+|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555556666666666665
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.83 E-value=72 Score=30.60 Aligned_cols=159 Identities=15% Similarity=0.175 Sum_probs=73.0
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIIS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 116 (468)
.|.....+++..++.+..++-+..+..+|+..| .+...|..++.+|..+ .-+.-..+++++.+ .|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 344445555666666656666666666665544 2444555566666555 33444455554443 22222233333
Q ss_pred HHHhcCCHHHHHHHHhhCCC------CCH---hHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc
Q 012234 117 GYMVHGFVEKAMDLFQVMKR------PGL---STWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~ 186 (468)
-|-+ ++...+...|.+... .+. ..|..+... -..+.+..+.+....... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3332 455555555544321 111 123332221 123444444444444332 222233344444455555
Q ss_pred cCChhhHHHHHHHHHHcC
Q 012234 187 FSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~ 204 (468)
..++.+|.+++..+.+.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 566666666666555443
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.73 E-value=22 Score=24.67 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHH
Q 012234 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKA 127 (468)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 127 (468)
+.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. +.+..|..++.++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34556666666533 33223322222224566777777777776 6666677777766666654433
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.51 E-value=12 Score=26.51 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHcCChHHHHHHHHHHHhhC----CCC-----cchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 353 ASISGDVELGKFVCDHLFEIE----PEN-----TGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..+.|++..|.+.+.+..... ... ......++..+...|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888877666665542 111 233456778888999999999999888763
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.99 E-value=39 Score=27.34 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
+++|...|+++...+|.|. .|..-+.+. ++|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 5677788888888899775 444444443 35788888888877643
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.92 E-value=66 Score=31.30 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHH-HcCChHHHHHHHHHHH
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYS-QAGRWDEADRVREQMK 404 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 404 (468)
..+.+.|-+..|.+.++.+..++|. ||-....+++.|+ ++.+|.=.+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455677777777777777777776 7766666666665 4556666666666553
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.75 E-value=10 Score=25.67 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=19.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHH
Q 012234 253 HGDASKAVSLFNEMLNNGIQPD--PVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
.++.++|+..|+...+.-..|. -.++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444322211 1234445555555555544443
No 381
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=53 Score=28.79 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=21.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 277 (468)
+..-..+.+++++|+..+.+....|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34445666777888888888777777666544
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=62 Score=28.39 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=72.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHccCChhhHHHHHHHHH----HcCCCCchhHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTI-------SSIFSLFSHFSNLKGGKEIHGYAV----KNRYDRNIYVAT 213 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 213 (468)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|.+.|+.....+...... +..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 455667888999999999999999887776543 445666777777655544433222 222122233444
Q ss_pred HHHHHHHhc-CChHHHHHHHhhccC----CC-c----chHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCCCHH
Q 012234 214 AIIDTYAKT-GFLHGAQRVFDRFKG----RS-L----IIWTAIISAYAAHGDASKAVSLFNE----MLNNGIQPDPV 276 (468)
Q Consensus 214 ~l~~~~~~~-g~~~~a~~~~~~~~~----~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~ 276 (468)
.|++.+... ..++..+.+.....+ .+ . ..-..++..+.+.|.+.+|+.+... +.+..-+|+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 455444332 334554544444332 11 0 1223456667777777777765543 33444455433
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=17 Score=32.48 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP----VKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.|.-=..-|.+..++..|...|.+-. ..| +...|+.=..+....|++..++.=+.+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 44445566778888899998887651 233 356777777777788999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHH
Q 012234 387 YSQAGRWDEADRVREQM 403 (468)
Q Consensus 387 ~~~~g~~~~A~~~~~~m 403 (468)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988888766554
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.68 E-value=48 Score=29.00 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=54.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh--
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS-- 322 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 322 (468)
|++++..|+|.+++...-+--+. .++|...-.. |-.|.+.+....+.++-..-... .-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 67888888888887765444332 2444443333 34478888888877777766643 11222334666666554
Q ss_pred ---ccCChHHHHHHHHhC
Q 012234 323 ---RARRISEATEFVSKM 337 (468)
Q Consensus 323 ---~~~~~~~A~~~~~~~ 337 (468)
=.|.+++|+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 468888888888443
No 385
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=73.56 E-value=46 Score=29.29 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHhc--CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHh-CCCCchHHHH
Q 012234 5 DIVSWNSMIAGYSQ--GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICN 81 (468)
Q Consensus 5 ~~~~y~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 81 (468)
|..+-..|++.... +.....-.++.+-+....+-.++..+...++..++..+++..-.++++..... ++.-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Q ss_pred HHHHHHHhCCCHHHHHHHHhh
Q 012234 82 ALIGMYAKCGSLDYARALLDE 102 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~ 102 (468)
.+|......|+..-..++.++
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhC
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.54 E-value=1.1e+02 Score=30.96 Aligned_cols=159 Identities=9% Similarity=0.059 Sum_probs=82.7
Q ss_pred cchHHHHHHHHh-cCCChhHHHHHHHHhhhCCCCCCCcc-----hHHHHHHHhhccCChHHHHHHHHHHHHhCCC----C
Q 012234 6 IVSWNSMIAGYS-QGGFYEECKALFREMLNSPVLRPDGV-----TVVSVLQACGQSSDIVFGMEVHNFVIESHIK----M 75 (468)
Q Consensus 6 ~~~y~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~ 75 (468)
..++-.+...+. ...+++.|+..+.+.. ...-+++-. ....++..+.+.+... |.+.+++.++.--. +
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 345555666665 5677888888888765 221122211 1223444555554444 88777776654211 2
Q ss_pred chHHHHHH-HHHHHhCCCHHHHHHHHhhcCC-----CC--eehHHHHHHHH--HhcCCHHHHHHHHhhCCC---------
Q 012234 76 DLWICNAL-IGMYAKCGSLDYARALLDEMSD-----KD--EVSYSAIISGY--MVHGFVEKAMDLFQVMKR--------- 136 (468)
Q Consensus 76 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~--~~~~~~~~A~~~~~~~~~--------- 136 (468)
-...+..+ +..+...++...|.+.++.+.. .+ ...+-.++.+. .+.+..+++.+.++.+..
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23333333 3333334788888888876653 12 22333333333 344555555555554411
Q ss_pred ----CCHhHHHHHHHH--HHhCCChHHHHHHHHHHH
Q 012234 137 ----PGLSTWNAVISG--LVQNNRHEAVLDLVREMQ 166 (468)
Q Consensus 137 ----~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 166 (468)
|-..+|..++.. +...|+++.+...++++.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233456666553 455677666666665553
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.58 E-value=1.2e+02 Score=30.64 Aligned_cols=49 Identities=14% Similarity=-0.096 Sum_probs=30.9
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCC-------HhHHHHHHHHHhccCChHHHHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPS-------VEHYACMVGVLSRARRISEATEFVS 335 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 335 (468)
-.+++..|...+..+.....-.|+ +..+....-.+...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467888898888888754222222 2222222233446789999999997
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.21 E-value=43 Score=25.40 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhh--CCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 361 LGKFVCDHLFEI--EPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 361 ~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.+.++|..|... +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888775 455677888889999999999999998875
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.88 E-value=41 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666667777777777777776655
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.39 E-value=4.1 Score=37.98 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=68.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH-HHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY-ACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISG 357 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 357 (468)
-+......+.++.|..++.++.+ +.|+-..| ..=..++.+.+++..|+.=+.+. ...|. ...|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999998884 46754443 33337788888888888655444 44554 344555556777778
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
.+.+|...|+......|+++.+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHH
Confidence 888999999988888888765443
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.11 E-value=14 Score=35.56 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCC--HhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQPS--VEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
.|+...|.+.+..... ..|. -...-.|.....+.|...+|..++.+. . ....+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4566666666655542 2331 122233444455555556666655443 1 2233455566666666667777777
Q ss_pred HHHHHHHhhCCCCcchHHHHHHH
Q 012234 364 FVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
+.|+.+.++.|+++..-+.|...
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 77777777777666665555433
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.00 E-value=33 Score=25.79 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=35.6
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
.+..-|++.+...-+.+|.+.+|+..|.++++-+...-++....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 345678888888888888888888888888888777655544444443
No 393
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.82 E-value=47 Score=25.04 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
+..+-++.+..-.+.|++......+++|.+.+|+..|.++|+-++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455566666678888888888899999999999999999887753 334333455444
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.58 E-value=43 Score=24.39 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 012234 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASG 169 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 169 (468)
.+.+.|++++|+..=.....||...|-+|.. .+.|--+++...+.++-.+|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555533333333355555544432 35566666666666555444
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.56 E-value=37 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.2
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (468)
..|+.+.|..++..+. +++..|...++++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 7777777777777776665444
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.93 E-value=39 Score=26.23 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=44.8
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 327 ISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 327 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
.+.|.++.+-|+ ...............|++.-|.++.+.++..+|+|...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 345666666664 334444455667789999999999999999999999988888888877654
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.72 E-value=1.1e+02 Score=28.53 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhhh
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPV--TFTAVLSACA--HSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 303 (468)
.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333333 2333333332 23445566666665543
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.56 E-value=90 Score=27.33 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=41.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
-++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++ +...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 45677788888899999988888766433222222221122222222222221 222222233 355
Q ss_pred ccCCHHHHHHHHHHhhhh
Q 012234 287 HSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~ 304 (468)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877766643
No 399
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.97 E-value=62 Score=25.23 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=59.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCC-----CCCCcchHHHHHHHhhccCC-hHHHHHHHHHHHHhCCCCchHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPV-----LRPDGVTVVSVLQACGQSSD-IVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
..|+++.-....+++...+.+++.+. .-. -..+..+|..++++.++... --.+..+|..+.+.+.+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~-~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLH-FLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHH-HhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 35777777777778888888777774 211 02345678888888877766 456778888888877888888888
Q ss_pred HHHHHHHhC
Q 012234 82 ALIGMYAKC 90 (468)
Q Consensus 82 ~l~~~~~~~ 90 (468)
.+|.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888887664
No 400
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.94 E-value=74 Score=26.12 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCC--------------CCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRY--------------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 233 (468)
++-.|.+..++.++++++..+.+..+ .+.-.+.|.....+.++|.++.|+.+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 33444555555555555555444321 2223344555566666666666666655
No 401
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=65.41 E-value=1.2e+02 Score=28.33 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCHhHHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012234 137 PGLSTWNAVISGLVQN---NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 188 (468)
.+-..+..+++++.++ .+++.|+-++-+|++.|-.|-...-..++-++...|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 3434455566666544 678888888888888876666655555555554444
No 402
>PRK10941 hypothetical protein; Provisional
Probab=64.93 E-value=41 Score=29.51 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=42.6
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
+.+-.+|.+.++++.|+...+.+- ..| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344456667777777777776662 333 45555556666777777777777777777777766654
No 403
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.85 E-value=89 Score=26.66 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=54.7
Q ss_pred HHHHHH--HhCCCHHHHHHHHhhcCCCCe-eh-HHHHHHHHHhcCCHHHHHHHHhhCCCC--CHhHHHHHHHHHHhCCCh
Q 012234 82 ALIGMY--AKCGSLDYARALLDEMSDKDE-VS-YSAIISGYMVHGFVEKAMDLFQVMKRP--GLSTWNAVISGLVQNNRH 155 (468)
Q Consensus 82 ~l~~~~--~~~g~~~~A~~~~~~~~~~~~-~~-~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 155 (468)
.++.++ ...+++++|.+.+- +|+. .+ ...++.++...|+.+.|..+++....+ +......++.. ...+..
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 344443 34566777777663 3322 22 235777777788888888888877642 22223333333 666788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012234 156 EAVLDLVREMQASGVRPNAVTISSIFSLFS 185 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 185 (468)
.+|..+-+...+.. ....+..++..+.
T Consensus 157 ~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 157 TEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 88887766654321 1234444554444
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.11 E-value=30 Score=28.53 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 340 KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
.|++.++..++.++...|+.++|.+...++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555666666555555555555
No 405
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.87 E-value=20 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=29.9
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
.+.|+.++|..+|+.+..+.|.++.++..++......+++-+|-..|-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 355666666666666666666666666666666555555555555553
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.80 E-value=38 Score=27.93 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=30.0
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
...+.+......+...+.....|++.+|..++..+...|+.++|..+.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444433333332244677777777777777777777777776666
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.84 E-value=13 Score=31.20 Aligned_cols=55 Identities=24% Similarity=0.371 Sum_probs=38.9
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..+.++.+.+-+++.++.++-|.....|..++..-.++|+++.|.+-+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456677777777777777777777777777777777777777777777766543
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.71 E-value=49 Score=25.36 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCCHhHHHHHHHHHhccCC---hHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 308 QPSVEHYACMVGVLSRARR---ISEATEFVSKMP--VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.++..+--.+.-++.+..+ ..+.+.++.++- ..|+ .....-|.-++.+.++++.+.+..+..++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444455555555543 444555555552 2332 3444556678889999999999999999998887643
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.46 E-value=48 Score=32.29 Aligned_cols=87 Identities=10% Similarity=-0.054 Sum_probs=70.0
Q ss_pred hccCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 322 SRARRISEATEFVSKM-PVKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
.-.|+...|.+.+... ...|. .+....|.....+.|....|-.++.+.+.+.-..|-++..++++|....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 3468889999888776 23442 33455667777788888999999999999887788899999999999999999999
Q ss_pred HHHHHHhCCC
Q 012234 399 VREQMKESGL 408 (468)
Q Consensus 399 ~~~~m~~~~~ 408 (468)
.++...+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 9998877543
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.38 E-value=2.4e+02 Score=29.73 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
-|..|+..|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3888899999999999999999988763
No 411
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=59.32 E-value=1e+02 Score=25.41 Aligned_cols=23 Identities=4% Similarity=0.115 Sum_probs=14.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhh
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
++-.|-+.-++.++.++++.+.+
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777776653
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.64 E-value=53 Score=30.73 Aligned_cols=54 Identities=4% Similarity=-0.027 Sum_probs=28.8
Q ss_pred HHHHHHhccCChHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 316 CMVGVLSRARRISEATEFVSKMPVKP----------SAKVWGALLYGASISGDVELGKFVCDHL 369 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 369 (468)
.|++..+-.|++..|++.++.+.... ...++..+.-+|.-.+++.+|++.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777776663111 2334444444555555555555555543
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.36 E-value=1.3e+02 Score=26.37 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=75.0
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF----NEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAW 295 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 295 (468)
+.+++++|++++.. -...+.+.|+...|.++. +-..+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45666777766442 223445555555554443 33334456666655555555444332111 112
Q ss_pred HHHHHhhh--hcCCC--CCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 296 DIFNAMSG--QYGIQ--PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 296 ~~~~~~~~--~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
.+.+++.+ +.+-. -++.....+...|.+.|++.+|+..|-.-. .|+...+..++......|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 22222221 11222 256677777788888888888887775542 2222222223332222333
Q ss_pred hCCCCcchHH-HHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 372 IEPENTGNYI-IMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 372 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|.+...|. ..+--|...|+...|..+++...+.
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33333333 3344577788999999988777764
No 414
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.28 E-value=1.6e+02 Score=27.47 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 110 SYSAIISGYMVHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 110 ~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
.+.-+...|...|+++.|++.|.+... ..+..|-.+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677778888888888888888654 2223466667777777888877777776655
No 415
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.92 E-value=2.6e+02 Score=29.86 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=20.3
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 012234 309 PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 357 (468)
++...-...+.++.+.|..+.+...+..+-..++..+=...+.++...+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 3444444555555555544333222222222334333333444444443
No 416
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.33 E-value=1.4e+02 Score=26.49 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
++.....|..+|.+.+|.++.++.. .. .+...+-.++..+...||--.+...++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445577889999999999998873 33 4677888889999999998888777776644
No 417
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.45 E-value=92 Score=24.32 Aligned_cols=63 Identities=8% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012234 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 224 (468)
+.+.+.+.|++++..- ..++..+...++.-.|.++|+.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455666777776543 45667777777778899999999988777766666656666666653
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.25 E-value=96 Score=25.30 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=24.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (468)
.+-.|.+.|.+++|.+++++..+ .|+......-+....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHc
Confidence 34567788888888888888774 34444444444444433
No 419
>PRK14700 recombination factor protein RarA; Provisional
Probab=56.06 E-value=1.1e+02 Score=27.35 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----hhHHHHHHHHHHcCC
Q 012234 140 STWNAVISGLVQ---NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL-----KGGKEIHGYAVKNRY 205 (468)
Q Consensus 140 ~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~ 205 (468)
..+--+++++.+ -.+++.|+-++.+|++.|-.|....-..++.++...|.- ..|...++.....|.
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334445677655 478999999999999999888887777777777766642 334444444444443
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.58 E-value=80 Score=23.16 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888766
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.13 E-value=28 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.-...++.+|...|++++|.++++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455778888889999999888887754
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.09 E-value=28 Score=30.76 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=32.7
Q ss_pred CCHh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 137 PGLS-TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179 (468)
Q Consensus 137 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 179 (468)
+|.. -|+.-|....+.|+.++|+.++++..+.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4444 367888999999999999999999998887655555543
No 423
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.68 E-value=1e+02 Score=24.07 Aligned_cols=89 Identities=9% Similarity=0.063 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCC-hHH
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNR-HEA 157 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 157 (468)
..|.++.-....+.+...+.+++.+..-+.. . +. ...+...|..++.+..+..- --.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~----~----------------~~--~~~~~ssf~~if~SlsnSsSaK~~ 98 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTD----N----------------II--GWLDNSSFHIIFKSLSNSSSAKLT 98 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHH----H----------------Hh--hhcccchHHHHHHHHccChHHHHH
Confidence 3566666666666677766666655110000 0 00 01345677888887766655 445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 189 (468)
+..+|..|.+.+.+++..-|..+++++.+...
T Consensus 99 ~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 99 SLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 67788888887788888888888888776533
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.14 E-value=84 Score=22.97 Aligned_cols=78 Identities=9% Similarity=-0.001 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012234 56 SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135 (468)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 135 (468)
...++|..+.+.+...+. ....+--+.+..+.+.|++++|+..=.....||...|.+|- -.+.|--+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 456777777777777653 23334444556677888888885444444456666666554 347788888888887665
Q ss_pred C
Q 012234 136 R 136 (468)
Q Consensus 136 ~ 136 (468)
.
T Consensus 97 ~ 97 (116)
T PF09477_consen 97 S 97 (116)
T ss_dssp T
T ss_pred h
Confidence 4
No 425
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=53.74 E-value=59 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=12.6
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHhCC
Q 012234 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNN 153 (468)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (468)
.++|.++++.++..+..+|..+..++...|
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334444444444444444444444443333
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.33 E-value=33 Score=30.37 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (468)
-|+..|....+.||+++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46777888888888888888888888887664444443
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.29 E-value=27 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=22.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
|-...-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333455678899999999999998888764
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.62 E-value=90 Score=31.05 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCCC------eehHHHHHHHHHhcCCHHH------HHHHHhhCC-CCCHhHHHHHHHH
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSDKD------EVSYSAIISGYMVHGFVEK------AMDLFQVMK-RPGLSTWNAVISG 148 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~------A~~~~~~~~-~~~~~~~~~l~~~ 148 (468)
+|+.+|..+|++-.+.++++.+...+ ...||..|+...+.|.++- |.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78888889999999988888876531 3467777888888876542 444444432 2556677777666
Q ss_pred HHhCCChHHHHHHHHHHH
Q 012234 149 LVQNNRHEAVLDLVREMQ 166 (468)
Q Consensus 149 ~~~~g~~~~a~~~~~~m~ 166 (468)
...--+-.-.+-++.+++
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 554333333333344433
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.97 E-value=85 Score=22.07 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHHHHHHHHHcCChH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--NTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 394 (468)
|...-..+...+...|+++.|.+.+-.+++.++. +...-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4566667777788888888888888888777654 4566677777777777644
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.78 E-value=17 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=24.9
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 149 LVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183 (468)
Q Consensus 149 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 183 (468)
....|.-..|..+|++|++.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34457777899999999999988885 4555544
No 431
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.58 E-value=3e+02 Score=28.21 Aligned_cols=193 Identities=12% Similarity=0.106 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhhccC-CCc----------chHHHHHHHHHHcCChH
Q 012234 192 GGKEIHGYAVKNRYDRN---IYVATAIIDTYAKTGFLHGAQRVFDRFKG-RSL----------IIWTAIISAYAAHGDAS 257 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~g~~~ 257 (468)
+-..++.+|.+.--.|+ ..+...++-.|....+++...++.+.+.. ||. ..|.-.+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33445556655433343 34455566667777777777777666554 211 01111111112345666
Q ss_pred HHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC-h
Q 012234 258 KAVSLFNEMLNN--GIQPDPVT-----FTAV--LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR-I 327 (468)
Q Consensus 258 ~a~~~~~~m~~~--~~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~ 327 (468)
+|+.+.-.+.+. .+.||... |..+ -..|...+..+.|...|++.- .+.|+...=-.+...+...|. +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 777666555543 24555432 2111 122334455666666666655 445654332222222222332 2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 328 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+ ++.++ ..|-..+.+.|.++...+.++-+ +| ..+-.-++++.+|.+.-+.|-+..
T Consensus 338 ens~E-lq~Ig--------mkLn~LlgrKG~leklq~YWdV~---------~y---~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 338 ENSLE-LQQIG--------MKLNSLLGRKGALEKLQEYWDVA---------TY---FEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred cchHH-HHHHH--------HHHHHHhhccchHHHHHHHHhHH---------Hh---hhhhhhccCHHHHHHHHHHHhccC
Confidence 22211 11111 11223345666666666665432 22 122334578888888888887654
Q ss_pred C
Q 012234 408 L 408 (468)
Q Consensus 408 ~ 408 (468)
.
T Consensus 397 ~ 397 (1226)
T KOG4279|consen 397 P 397 (1226)
T ss_pred C
Confidence 3
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.36 E-value=80 Score=27.37 Aligned_cols=54 Identities=7% Similarity=-0.126 Sum_probs=28.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+...|...|++++|.++++.+.... .....+...+..++.+.|+.++...+.=+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4445555666666666665553321 11223444556666666666666655433
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.27 E-value=1.9e+02 Score=25.90 Aligned_cols=72 Identities=7% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----------cCChHH
Q 012234 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----------ARRISE 329 (468)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~~~~~~ 329 (468)
.++++.+...++.|.-..|..+.-.+...=.+...+.+|+.+..+ | .-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~--~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----P--QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----h--hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 355666666777777766665555555555667777777777643 1 124444444432 356666
Q ss_pred HHHHHHhC
Q 012234 330 ATEFVSKM 337 (468)
Q Consensus 330 A~~~~~~~ 337 (468)
.+++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666554
No 434
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=50.02 E-value=21 Score=24.18 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCcCCcch
Q 012234 436 SEQIYLILERLLGLMREEGYVLLDEV 461 (468)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~g~~p~~~~ 461 (468)
..++.+.+++....++.+|+.||--+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 45678888999999999999999654
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.21 E-value=2.2e+02 Score=26.88 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC-----------CCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 213 TAIIDTYAKTGFLHGAQRVFDRFKG-----------RSLIIWTAIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
..|++.++-.|++..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899998888876642 133466677778888888888888888765
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.08 E-value=68 Score=27.80 Aligned_cols=55 Identities=22% Similarity=0.027 Sum_probs=33.5
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP--------VKPSAKVWGALLYGASISGDVELGKFVCDHL 369 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 369 (468)
..+...|.+.|++++|.++|+.+. ..+...+...+..++...|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566777788888888777762 1122344455556666677777666655443
No 437
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.87 E-value=1.5e+02 Score=25.52 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC----------CCCHh-----------HHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMK----------RPGLS-----------TWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~----------~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
..-.+-+.+.|++.+|..-|.+.. +|... .+-....++...|++-++++.-.+.+...
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~- 260 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH- 260 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-
Confidence 334455778888888887776653 13322 23344456677788888888888877653
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
+-+...|-.-.++.+..-+..+|..-+..+.+..
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 4456677666777777777777777777777653
No 438
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.77 E-value=47 Score=18.54 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=7.5
Q ss_pred HHHHHHHcCChHHHHHH
Q 012234 349 LLYGASISGDVELGKFV 365 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~ 365 (468)
+...+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344444555555554
No 439
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.54 E-value=2e+02 Score=25.55 Aligned_cols=78 Identities=13% Similarity=-0.075 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC-------------
Q 012234 329 EATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG------------- 391 (468)
Q Consensus 329 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 391 (468)
.|..++.++...-+......+...|.. ..+.++|...|.++-+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555555322233333344433322 2366677777777766654 44444444 445444
Q ss_pred --ChHHHHHHHHHHHhCCCC
Q 012234 392 --RWDEADRVREQMKESGLA 409 (468)
Q Consensus 392 --~~~~A~~~~~~m~~~~~~ 409 (468)
+...|...+......+..
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 666777777777666653
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.35 E-value=1.2e+02 Score=23.00 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHH
Q 012234 157 AVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHG 198 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 198 (468)
.+.++|..|...|+-.. +..|......+...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666554332 2344455555555555555555554
No 441
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.97 E-value=2.6e+02 Score=26.89 Aligned_cols=387 Identities=11% Similarity=0.076 Sum_probs=211.3
Q ss_pred HHHHHhcCC--ChhHHHHHHHHhhhCCCCCCCc---chHHHHHHH-hhccCChHHHHHHHHHHHHhC-CCCc-----hHH
Q 012234 12 MIAGYSQGG--FYEECKALFREMLNSPVLRPDG---VTVVSVLQA-CGQSSDIVFGMEVHNFVIESH-IKMD-----LWI 79 (468)
Q Consensus 12 li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~---~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~ 79 (468)
+...+...| +...+++.++... ... +|+. .+...+... +....+++.|..-++...... .-|+ -.+
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~-~~~-is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a 90 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIF-QFQ-ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA 90 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHh-ccC-ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Confidence 345556667 6778888888776 432 2221 222233322 234567888887777664332 1122 235
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHhhcCC--CCeehHH-----HHHHHHHhcCCHHHHHHHHhhCCC-CCH--hHHHHHHH-
Q 012234 80 CNALIGMYAKCG-SLDYARALLDEMSD--KDEVSYS-----AIISGYMVHGFVEKAMDLFQVMKR-PGL--STWNAVIS- 147 (468)
Q Consensus 80 ~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~-----~li~~~~~~~~~~~A~~~~~~~~~-~~~--~~~~~l~~- 147 (468)
+..|..+|.... .+..+..++++..+ .+...|. .|+..+.-..++..|.+++..--. .|. ..|..++.
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ft 170 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHH
Confidence 566777777766 78888888877664 2333443 356667777889999988654332 222 22322221
Q ss_pred -----HHHhCCC---hHHHHHHHHHHHHCCCCCCHHH-------H-HHHHHHHHccCChhhHHHHHHHHHHc---CCC--
Q 012234 148 -----GLVQNNR---HEAVLDLVREMQASGVRPNAVT-------I-SSIFSLFSHFSNLKGGKEIHGYAVKN---RYD-- 206 (468)
Q Consensus 148 -----~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~-------~-~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-- 206 (468)
...-..+ +..+.....++.+. ..+|... | +.-+.-|...|+...+...++++.+. +..
T Consensus 171 ls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 171 LSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 1222233 34444445555544 4555432 1 12234456678888777777766642 111
Q ss_pred ----------CchhHHHHHHH----HH---------HhcCChHHH-------HHHHhhccCCCc--c--------hHHHH
Q 012234 207 ----------RNIYVATAIID----TY---------AKTGFLHGA-------QRVFDRFKGRSL--I--------IWTAI 246 (468)
Q Consensus 207 ----------~~~~~~~~l~~----~~---------~~~g~~~~a-------~~~~~~~~~~~~--~--------~~~~l 246 (468)
|.+..+..+.. ++ .-.|-+++| +...++..+.+. . ....+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 22221111111 11 012333444 444444444441 1 12222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-CCCCCHH--------HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhH--HH
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNN-GIQPDPV--------TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH--YA 315 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~ 315 (468)
+-+-.-.|++.+|++-...|.+- .-.|... .-..+...|+..+-++.|+.-|....+. .-.-|... -.
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nl 408 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNL 408 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 22334579999999998888762 2234321 1122233455678899999988887754 22223222 23
Q ss_pred HHHHHHhccCChHHHHHHHHhCCCCCCHHHH------HH--HHHH--HHHcCChHHHHHHHHHHHhhCC-C-----Ccch
Q 012234 316 CMVGVLSRARRISEATEFVSKMPVKPSAKVW------GA--LLYG--ASISGDVELGKFVCDHLFEIEP-E-----NTGN 379 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~--l~~~--~~~~g~~~~a~~~~~~~~~~~~-~-----~~~~ 379 (468)
.+...|.+.|+-+.--++++.+. +++..++ +. ++.+ ....+++.+|..++.+.++... . ..-.
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 45667889999888888888885 2221111 11 1222 3468899999999999887741 1 1123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
...|+......|+..++.....-.
T Consensus 488 LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccchH
Confidence 445667778889988888765443
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.18 E-value=62 Score=19.46 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=21.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777766666665553
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.84 E-value=1.4e+02 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=17.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 012234 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94 (468)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (468)
.|+...+++....+. .|..+-..+.+.+.+.|-++
T Consensus 310 ~~d~~~vL~~~~~~~-----~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSLF-----DDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHHc-----cchhHHHHHHHHHHhcCccc
Confidence 677777777665442 13344455666666666655
No 444
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.43 E-value=1e+02 Score=21.38 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (468)
...+.+++..+++.+..+++.+|..+..++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3455667777777777777777777777766665443
No 445
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.40 E-value=52 Score=29.25 Aligned_cols=78 Identities=6% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGA-LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
..|+..|...+.-..+.|.+.+.-.++.+. ...| |...|-. -..-+...++++.+..+|.+.++.+|.+|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 445566665555555566666666666555 2233 4455533 233456788999999999999999999998876654
Q ss_pred H
Q 012234 385 N 385 (468)
Q Consensus 385 ~ 385 (468)
+
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 4
No 446
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.34 E-value=21 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.4
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcc
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGV 43 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~ 43 (468)
.-+++.|+..|.++.....+||+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3478999999999985667777754
No 447
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.30 E-value=2.4e+02 Score=25.40 Aligned_cols=109 Identities=17% Similarity=-0.015 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhhhcCC---CCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGI---QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
.+.|.+.|+.......- ..++.....++....+.|..+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777888887753111 335556666777777888766666666665556677788888888888888888888888
Q ss_pred HHHhhC-CCCcchHHHHHHHHHHcCCh--HHHHHHH
Q 012234 368 HLFEIE-PENTGNYIIMANLYSQAGRW--DEADRVR 400 (468)
Q Consensus 368 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~A~~~~ 400 (468)
.+.... ..+.... .++..+...+.. +.+..++
T Consensus 226 ~~l~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 226 LLLSNDKVRSQDIR-YVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHCTSTS-TTTHH-HHHHHHH-CSTTCHHHHHHHH
T ss_pred HHcCCcccccHHHH-HHHHHHhcCChhhHHHHHHHH
Confidence 888853 2233333 334344433433 5555554
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.28 E-value=2.7e+02 Score=26.04 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=38.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCChhhHHHHHHHHHHc
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAV--TISSIFSLFS--HFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 203 (468)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999886 555554 3444455543 455677788777766654
No 449
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.11 E-value=90 Score=22.39 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhC-CCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 362 GKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 362 a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.++.++++...+ +-.|..+..|+-.|++.|+-+.|.+-|+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344445554443 34455666777777777777777776654
No 450
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.95 E-value=2.5e+02 Score=25.51 Aligned_cols=152 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC------------hHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 012234 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR------------ISEATEFVSKM--PVKPSAKVWGALLYGASISG 357 (468)
Q Consensus 292 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 357 (468)
.+..++=+.+.+. +-|..+|-.++..--..-. .+.-+.+++++ ..+.+...+..++..+.+..
T Consensus 3 ~r~~el~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 3 KRTAELNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred hHHHHHHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQ---AGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGD 434 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (468)
+.+...+.+++++..+|.++..|...++.... .-.+.+...+|.+..+.=.....+. .........
T Consensus 80 ~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-----------~~~~~~~~~ 148 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-----------MTSHPDLPE 148 (321)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc-----------cccccchhh
Q ss_pred ChHHHHHHHHHHHHHHHHcCCcC
Q 012234 435 KSEQIYLILERLLGLMREEGYVL 457 (468)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~g~~p 457 (468)
....+...+.++...+.+.|+.+
T Consensus 149 ~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 149 LEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHHHHHHHHHHHHCCchH
No 451
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.54 E-value=52 Score=27.89 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
...|-.+....-+.|+++.|.+.+++.++++|+
T Consensus 29 ~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 29 AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 334444444444444444444444444444443
No 452
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.48 E-value=1.1e+02 Score=26.79 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=47.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+=.++...++++.|....++....+|.++.-..--+.+|.+.|...-|+.-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 33456777888888988888888888888888888888888888888888877775543
No 453
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=43.29 E-value=19 Score=22.04 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcc
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGV 43 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~ 43 (468)
.-+++.|...|..+.....+||+.+
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHhc
Confidence 4578999999999985556888764
No 454
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.17 E-value=28 Score=23.62 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=23.1
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHH
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (468)
+++..+.++.--++|+++++.+.+.| ..+...
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 55666777777888888888888887 334443
No 455
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.92 E-value=3.2e+02 Score=26.40 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=70.3
Q ss_pred HHHHhcCChHHHHHHHhhccC---CC---------cchHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCC---
Q 012234 217 DTYAKTGFLHGAQRVFDRFKG---RS---------LIIWTAIISAYAAHGDASKAVSLFNEMLN-------NGIQPD--- 274 (468)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~~~~---~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~p~--- 274 (468)
..+.-.|++.+|.+++...-- +. -..||.|...+.+.|.+..+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344557899999998865431 11 12467777777778888777777776653 455543
Q ss_pred --------HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 275 --------PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 275 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
..+||.= -.|...|+.-.|.+.|.+....+ ..++..|-.|..+|.
T Consensus 328 tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 2345533 35778899999999999988743 566778888888774
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.84 E-value=33 Score=26.15 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=12.1
Q ss_pred CChHHHHHHHHHHHHhCCCCch
Q 012234 56 SDIVFGMEVHNFVIESHIKMDL 77 (468)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~ 77 (468)
|.-..|-.+|..|++.|-+||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 4444555566666666655553
No 457
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.40 E-value=88 Score=23.43 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCcchH----HHHHHHHHHcCChHHHHHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLF-------EIEPENTGNY----IIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
.++..|..++...|+++++....+.++ +++.+.-..| ..-+.++...|+.++|...|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 334444555555555555444333332 2333332222 33455677788888888777643
No 458
>PRK09857 putative transposase; Provisional
Probab=40.51 E-value=2.6e+02 Score=25.02 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
..++.-....++.++-.++++...+..|......-+++.-+...|.-+++.++.++|...|...
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444556777777777777776666666666678888888888888999999999998853
No 459
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.72 E-value=1.3e+02 Score=21.14 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=13.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhh
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556666666666666553
No 460
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.66 E-value=79 Score=28.70 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=28.4
Q ss_pred hHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 327 ISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 327 ~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
.++...++.++. .-|+ ...|-.++......|.++..+.+|++++..+
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 445666666442 2233 3456666666666777777777777776665
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.40 E-value=1.8e+02 Score=22.67 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=8.1
Q ss_pred HhccCCHHHHHHHHHHhhh
Q 012234 285 CAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~ 303 (468)
+...++.-.|..+++.+.+
T Consensus 30 L~~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 30 LLEADGHLSAEELYEELRE 48 (145)
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 3333333444444444443
No 462
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=38.90 E-value=1.1e+02 Score=21.43 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=10.6
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHH
Q 012234 125 EKAMDLFQVMKRPGLSTWNAVISGL 149 (468)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~l~~~~ 149 (468)
+++..+++.++..+..+|..+..++
T Consensus 51 ~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 51 SQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHH
Confidence 3344444444444444444444444
No 463
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.73 E-value=3.5e+02 Score=25.68 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 012234 96 ARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV 150 (468)
Q Consensus 96 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 150 (468)
...+.+.+..++.......+.++...+...-...+..-+..++.......+.++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3344444444455455555555555555544444444444444444333334443
No 464
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.20 E-value=1.9e+02 Score=22.54 Aligned_cols=61 Identities=5% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc-CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 164 EMQASGVRPNAVTISSIFSLFSHF-SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 164 ~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34566777665443 344444443 45778888888888887666766666667777766643
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.80 E-value=2.6e+02 Score=23.83 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCC-----CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP-----DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD 76 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 76 (468)
+.++..-+|.|+--|.-...+.+|-+.|.. ..++.| +...-..-|+.....|+.+.|.+..+..-..-+..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Q ss_pred hHHHHHHHHH----HHhCCCHHHHHHHHhh
Q 012234 77 LWICNALIGM----YAKCGSLDYARALLDE 102 (468)
Q Consensus 77 ~~~~~~l~~~----~~~~g~~~~A~~~~~~ 102 (468)
...+-.|... +.+.|..++|+++++.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.62 E-value=2.7e+02 Score=23.99 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (468)
....--+..|.+.-++.-|-...++..+ +.--...+--|.+..+..--.++.+-....+++-+..-..+++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCChHHHHHHHhhccC----------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKG----------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV 281 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 281 (468)
...|+..+|+..++.-.. |.+.....++..|.. +++++|.+++.++-+.|..|....-+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.44 E-value=4.1e+02 Score=26.10 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
...++.-|.+.+++++|..++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3445566777777777777766654
No 468
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.41 E-value=4.9e+02 Score=27.01 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=37.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhhHHHHHHHHHHcCCCC
Q 012234 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-----LKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 207 (468)
++.++++.|+.++.+|++.|..|....-..++.+....|. ...+...+......|.+-
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE 331 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPE 331 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcc
Confidence 3458899999999999999988876665555555545553 223344444455556443
No 469
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=37.10 E-value=4e+02 Score=25.86 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCHHHH-HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH---hccCChHHHHHHHHhCC--CCCCHHH
Q 012234 272 QPDPVTF-TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL---SRARRISEATEFVSKMP--VKPSAKV 345 (468)
Q Consensus 272 ~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~--~~~~~~~ 345 (468)
.|+..|+ +.+++-+...|-+..|...+..+.. -.+|+...|..+++.= ..+| ...+.++|+.+. ...|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 4454443 3456667778889999999999885 3355777788777543 2233 777888888873 3478888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 346 WGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
|...+.--..+|..+.+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 888888888999999998888877664
No 470
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.05 E-value=2.3e+02 Score=28.48 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFTAVLSACAHSGLV 291 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~ 291 (468)
++..+|..+|++..+.++++..... |-+.-...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666543 2222233455556666666654
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.64 E-value=3.2e+02 Score=24.59 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH----------hcCCHHHHHHHH
Q 012234 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM----------VHGFVEKAMDLF 131 (468)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~A~~~~ 131 (468)
.++++.+.+.++.|.-..+.-+.-.+...=.+...+.+|+.+...... +..|+..|| -.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 355666666666666666655555555666666666666666542111 333333332 357777777777
Q ss_pred hhCCCCCHhHHHHHHHHH
Q 012234 132 QVMKRPGLSTWNAVISGL 149 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~ 149 (468)
+.-...|+...-++...+
T Consensus 342 Q~yp~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVADSL 359 (370)
T ss_pred hcCCCCCHHHHHHHHHHH
Confidence 776665655544444444
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.00 E-value=1.6e+02 Score=23.65 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=32.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCCh
Q 012234 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 327 (468)
+...|++++..-. .++..+....+.-.|.++++.+.+. +...+..|...-+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3445665554433 2333344444555677777777655 4455555555556666666644
No 473
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.67 E-value=3.8e+02 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=10.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~ 300 (468)
.|.+++.|...+.++.|..+..+
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK 234 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSK 234 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhc
Confidence 34444444444444444444433
No 474
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.18 E-value=6e+02 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHhhccCC
Q 012234 212 ATAIIDTYAKTG--FLHGAQRVFDRFKGR 238 (468)
Q Consensus 212 ~~~l~~~~~~~g--~~~~a~~~~~~~~~~ 238 (468)
...++.+|++.+ ++++|+....++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345666676666 667777776666654
No 475
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.82 E-value=5.1e+02 Score=28.52 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=97.5
Q ss_pred HHHHHcCChHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----hcCCCC--CHhHHH
Q 012234 248 SAYAAHGDASKAVS------LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG----QYGIQP--SVEHYA 315 (468)
Q Consensus 248 ~~~~~~g~~~~a~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p--~~~~~~ 315 (468)
+.....|.+.+|.+ ++......--++....|..+...+-+.|+.++|...-.+..- ..|..+ +...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34455666776666 555332221234466788888888899999998876654321 012222 344566
Q ss_pred HHHHHHhccCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC---Cc
Q 012234 316 CMVGVLSRARRISEATEFVSKMP---------VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEI-----EPE---NT 377 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~---~~ 377 (468)
.+.......+....|...+.+.. ..|. ..+++.+-..+...++++.|.+..+.+... .|. +.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 66655566667777777666541 3444 344455544555668899999999888775 232 44
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
..+..+++.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5678888888888888887765443
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.41 E-value=3.2e+02 Score=27.44 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=60.9
Q ss_pred hccCChHHHHHHHHhC-C-CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 322 SRARRISEATEFVSKM-P-VKPS------AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~-~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
.+..++..+.++|..- . +..| ......|--+|....+.+.|.++++++.+.+|.++-.-..+.......|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3556677777776543 2 1111 334556666777788889999999999888888888877888888888888
Q ss_pred HHHHHHHHHHHhC
Q 012234 394 DEADRVREQMKES 406 (468)
Q Consensus 394 ~~A~~~~~~m~~~ 406 (468)
++|+..+...+..
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776554
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.31 E-value=43 Score=34.31 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=44.0
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
+...|+++.|++.-.++ .+..+|..|.....+.|+.+-|+..|++.+ .|+.|-..|.-.|+.++-.+
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEEeCCHHHHHH
Confidence 34556777666554433 244577777777777777777777777653 33444445556677666655
Q ss_pred HHHHHH
Q 012234 365 VCDHLF 370 (468)
Q Consensus 365 ~~~~~~ 370 (468)
+...+.
T Consensus 720 m~~iae 725 (1202)
T KOG0292|consen 720 MMKIAE 725 (1202)
T ss_pred HHHHHH
Confidence 554443
No 478
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.05 E-value=4.5e+02 Score=25.56 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=11.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH
Q 012234 152 NNRHEAVLDLVREMQASGVRPNA 174 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~ 174 (468)
.++++.|+.++..|...|..|..
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~ 278 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEV 278 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 34555555555555555444433
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.85 E-value=3.9e+02 Score=24.81 Aligned_cols=56 Identities=5% Similarity=0.075 Sum_probs=35.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhhHHHHHHHHH
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS-HFSNLKGGKEIHGYAV 201 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 201 (468)
|..+.+.|-+..|+++.+-+...+..-|+......|..|+ +.++++-..++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4566777888888888888877654445555555666553 4555555555555443
No 480
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.81 E-value=1.1e+02 Score=27.34 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH-HHHHHHHcCChHHHHHHHHHHHhC
Q 012234 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII-MANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...|+..|...+.--.+.|.+.+...+|.++....|.|...|.. -..-|.-.++++.++.++.+-.+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34577888888877778889999999999999999999988865 455577788999998888665443
No 481
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.51 E-value=3.2e+02 Score=29.88 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=83.8
Q ss_pred HHhccCCHHHHHH------HHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC---------CCC-CHHHHH
Q 012234 284 ACAHSGLVDKAWD------IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---------VKP-SAKVWG 347 (468)
Q Consensus 284 ~~~~~~~~~~a~~------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~-~~~~~~ 347 (468)
.....|.+.++.+ ++...... --++....|..|...+.+.|+.++|+.+-.+.. ..| +...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444556665555 55533321 113356778889999999999999998877652 233 345666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI--------EPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+...+...++...|...+.++... .|+....+..+...+...++++.|.++.+.+.+
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6766777777888888888777665 244455566777777777999999999998877
No 482
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.48 E-value=1.6e+02 Score=21.78 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=26.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
+++..+.++...++|+++++.|.++| ..+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56677777788888888888888887 445444444433
No 483
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.46 E-value=1.7e+02 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 012234 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 104 (468)
++|+-....|+..|..+|..+++.+.-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777777777777776666666666666666654
No 484
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.46 E-value=96 Score=17.63 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+|..|+..-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677788888888888888877766654
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.94 E-value=58 Score=21.24 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
|....++.++...+...-.+.++..+.++.+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666653 355555555555544
No 486
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.87 E-value=4.3e+02 Score=24.92 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=22.1
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHh
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLW--ICNALIGMYAKCGSLDYARALLD 101 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 101 (468)
+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 37 tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 37 SPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred CHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 3344444555544 333344455433321 11123334445566655555554
No 487
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=32.75 E-value=3.9e+02 Score=24.45 Aligned_cols=124 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhh-hcCCCCC-------HhHHHHHHHHHhccCChHHHHHHHHhCC-------CCCCHHHH
Q 012234 282 LSACAHSGLVDKAWDIFNAMSG-QYGIQPS-------VEHYACMVGVLSRARRISEATEFVSKMP-------VKPSAKVW 346 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~p~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~ 346 (468)
++......+.+++..++..+.. ..|...+ ..+...+.+.|.+.|+.++-..++...+ ........
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHH------HHHHHHHHcCChHHHHHHHHHHHh
Q 012234 347 GALLYGASI-SGDVELGKFVCDHLFEIEPENTGNYI------IMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 347 ~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..++..+.. .+..+.-+.++..+.+.-.....+|. .++..|...+++.+|..+...+.+
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 488
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.57 E-value=5.9e+02 Score=26.50 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=57.3
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHh---hccCChHHHHHHHHHHHHhCCCCchHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC---GQSSDIVFGMEVHNFVIESHIKMDLWI 79 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (468)
.-+...++.||..+-+.|++++....-..|. .. .+.++..|...+... ...++...+...|++.+..-..++.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~-~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~i-- 185 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMS-EI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPI-- 185 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHH-Hh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchH--
Confidence 3445667778888888888887777777776 32 244555565555443 2346666777777776654433332
Q ss_pred HHHHHHH-------HHhCCCHHHHHHHHhhcCC
Q 012234 80 CNALIGM-------YAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 80 ~~~l~~~-------~~~~g~~~~A~~~~~~~~~ 105 (468)
|.-.+.. +.+.++++....+|++...
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 2222222 2234566666777766654
No 489
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.30 E-value=3.2e+02 Score=23.32 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=8.8
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~ 300 (468)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33333434444444444443
No 490
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.87 E-value=41 Score=20.08 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCcCC
Q 012234 444 ERLLGLMREEGYVLL 458 (468)
Q Consensus 444 ~~~~~~~~~~g~~p~ 458 (468)
+++.+.+++.||.||
T Consensus 32 ~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 32 ERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHCCCCC
Confidence 466777888899997
No 491
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.79 E-value=1.2e+02 Score=28.79 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=29.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
..+...+.++.|..++.+.++. .||...| ..-..++.+.+++..|..=...+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 3445556667777777666664 4543332 22334555556665555555444443
No 492
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=4.3e+02 Score=24.68 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=71.8
Q ss_pred HHHHHHHhccCChHHHHHHHHhCCCC------CCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-------ch
Q 012234 315 ACMVGVLSRARRISEATEFVSKMPVK------PSAKV--WGALLYGASISGDVELGKFVCDHLFEIEPENT-------GN 379 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 379 (468)
..|...+-..|+.++|..++.+.++. ....+ ..--+..|...+|+-.|.-+-+++....-+.+ ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 34556677788888888888777411 01111 11124567788899998888887776632222 25
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEE
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFV 427 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 427 (468)
|..+++...+.+.+-++.+.|+..-+.|-......-|+..-...-.|+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 778888888999999999999998877654443333554433333333
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.74 E-value=1.3e+02 Score=22.19 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 290 (468)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445556666667766666555555555555555555443
No 494
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.52 E-value=5.7e+02 Score=25.95 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHhh
Q 012234 276 VTFTAVLSACAH---SGLVDKAWDIFNAMS 302 (468)
Q Consensus 276 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 302 (468)
.-+..||..|.+ ..+...|.++|--+.
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 445555555543 456666776665554
No 495
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.27 E-value=2.3e+02 Score=21.65 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
+...-+.+.|+.+|+++++..|++...+..|+..+-..
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 33445678999999999999999999999988887654
No 496
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.79 E-value=38 Score=30.48 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=57.3
Q ss_pred HhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHH
Q 012234 119 MVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGK 194 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 194 (468)
...|.++.|++.|...++ +....|..-.+++++.+++..|++=+...... .||.. .|-.--.+....|+++++.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 456777778877777665 23334555566777888888888777776654 44432 3444444555677788887
Q ss_pred HHHHHHHHcCCCCch
Q 012234 195 EIHGYAVKNRYDRNI 209 (468)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (468)
..+....+.++.+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 777777776655443
No 497
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.74 E-value=6.5e+02 Score=26.43 Aligned_cols=298 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVRE 164 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (468)
..|...|++++|+++-+.-++.-...+..-...|.+.+++..|-+++-++ ...+-.+.--+....+.+ +++.|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH-------------------HHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 165 MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH-------------------GYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 165 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
=+-..++|...+-..++..+.-.-.+++--.+- +.+.......+.....+....+...|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc
Q 012234 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (468)
+....+-.-+.. |..++.-+.+.|.+++|++++.. .-+...+....-.+... ............
T Consensus 521 e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~------~~~~el~yk~ap~Li~~----~p~~tV~~wm~~- 584 (911)
T KOG2034|consen 521 EELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLN------QRNPELFYKYAPELITH----SPKETVSAWMAQ- 584 (911)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHhhhHHHhc----CcHHHHHHHHHc-
Q ss_pred CCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMP------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
+-.........++..+.+.+...+-......+. ..-++..+|.++..|+...+-+.-..+-......+. ...-
T Consensus 585 ~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~-~~YD 663 (911)
T KOG2034|consen 585 KDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR-VHYD 663 (911)
T ss_pred cccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc-ceec
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
...-++.|.+.+...-+..++..|.
T Consensus 664 l~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 664 LDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHHHHHHHHhCccceeeeHHHHHH
No 498
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.52 E-value=4e+02 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=11.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 012234 246 IISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
.+..+...|++..|++++.+..
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455566666665555543
No 499
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=30.26 E-value=3.8e+02 Score=23.50 Aligned_cols=60 Identities=5% Similarity=-0.027 Sum_probs=32.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASG-VRP-----NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.|+.-|.+.|+.+.|-.++--+...+ ... +......++......++++.+.++.+-+...
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45556666777777666665554332 111 1223334455555666666666666655543
No 500
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.58 E-value=7.3e+02 Score=26.76 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHHHHHHHccC--ChhhHHHHHHHHHHc
Q 012234 177 ISSIFSLFSHFS--NLKGGKEIHGYAVKN 203 (468)
Q Consensus 177 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 203 (468)
+..++.+|.+.+ +++.|......+.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445667777776 677777777777654
Done!