Query 012234
Match_columns 468
No_of_seqs 602 out of 2736
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 05:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-38 5E-43 314.1 39.1 397 1-407 79-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.2E-40 292.5 32.2 382 3-388 147-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1E-29 3.5E-34 237.0 38.3 373 12-392 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-28 7.3E-33 228.1 36.3 353 48-406 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.2E-29 1.1E-33 237.7 22.8 183 140-323 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5E-29 1.7E-33 236.4 20.7 178 45-222 29-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.1E-25 3.9E-30 217.7 31.8 393 6-407 6-479 (514)
8 3fp2_A TPR repeat-containing p 99.9 1.4E-24 4.7E-29 211.3 32.4 392 6-408 25-493 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 7.7E-24 2.6E-28 201.3 32.5 326 40-402 24-405 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.5E-23 5E-28 199.3 32.8 365 4-396 24-444 (450)
11 2gw1_A Mitochondrial precursor 99.9 2.5E-23 8.6E-28 201.2 27.9 374 3-383 36-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.1E-20 7.1E-25 171.7 31.4 319 42-389 3-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 5.4E-20 1.8E-24 169.0 34.0 303 77-407 3-336 (359)
14 3fp2_A TPR repeat-containing p 99.9 2.1E-20 7.1E-25 181.8 31.1 367 4-381 57-500 (537)
15 2xm6_A Protein corresponding t 99.9 3.3E-18 1.1E-22 164.1 38.7 349 41-407 38-433 (490)
16 1fch_A Peroxisomal targeting s 99.9 3.3E-20 1.1E-24 171.3 23.7 293 90-402 38-355 (368)
17 3hym_B Cell division cycle pro 99.9 2.3E-19 7.9E-24 162.8 27.6 249 142-393 59-321 (330)
18 2xm6_A Protein corresponding t 99.9 1.3E-17 4.3E-22 160.0 39.7 351 5-375 38-435 (490)
19 3hym_B Cell division cycle pro 99.9 5.1E-19 1.8E-23 160.5 27.7 265 137-406 20-299 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.1E-17 7.2E-22 160.1 36.6 391 5-406 12-492 (530)
21 4g1t_A Interferon-induced prot 99.8 2.9E-18 9.8E-23 163.9 29.8 366 39-417 48-470 (472)
22 4eqf_A PEX5-related protein; a 99.8 3.8E-19 1.3E-23 163.9 21.0 258 141-402 67-352 (365)
23 1b89_A Protein (clathrin heavy 99.8 8.7E-19 3E-23 158.8 21.3 345 18-401 15-367 (449)
24 3mkr_A Coatomer subunit epsilo 99.8 3E-17 1E-21 145.5 30.4 271 116-400 7-288 (291)
25 1b89_A Protein (clathrin heavy 99.8 1.2E-19 4E-24 164.4 12.6 281 89-399 15-304 (449)
26 1fch_A Peroxisomal targeting s 99.8 3E-18 1E-22 158.0 22.0 295 51-370 34-357 (368)
27 2ooe_A Cleavage stimulation fa 99.8 6E-17 2E-21 156.9 31.1 364 39-407 10-455 (530)
28 3cv0_A Peroxisome targeting si 99.8 4.5E-18 1.5E-22 154.0 21.5 271 110-403 23-312 (327)
29 1xi4_A Clathrin heavy chain; a 99.8 8E-16 2.7E-20 155.3 38.7 348 10-401 989-1340(1630)
30 4eqf_A PEX5-related protein; a 99.8 3E-18 1E-22 158.0 19.4 259 41-301 64-353 (365)
31 3mkr_A Coatomer subunit epsilo 99.8 2.1E-17 7.2E-22 146.5 22.8 247 146-407 6-265 (291)
32 4g1t_A Interferon-induced prot 99.8 9.2E-17 3.2E-21 153.4 28.7 365 6-384 51-471 (472)
33 3cv0_A Peroxisome targeting si 99.8 2.5E-17 8.7E-22 149.0 19.6 275 5-302 20-313 (327)
34 1xi4_A Clathrin heavy chain; a 99.8 6.8E-15 2.3E-19 148.7 37.2 287 77-391 1105-1415(1630)
35 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.3E-20 132.2 22.9 228 140-407 6-237 (258)
36 3uq3_A Heat shock protein STI1 99.7 7E-16 2.4E-20 134.4 20.4 235 108-385 5-255 (258)
37 2pl2_A Hypothetical conserved 99.7 1.2E-15 4E-20 129.2 18.5 194 206-403 2-211 (217)
38 3e4b_A ALGK; tetratricopeptide 99.7 7.6E-16 2.6E-20 145.5 18.9 378 11-406 8-421 (452)
39 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-17 7.8E-22 161.5 7.7 123 109-231 128-258 (1134)
40 3spa_A Mtrpol, DNA-directed RN 99.7 2.9E-17 9.8E-22 160.8 8.3 150 140-325 128-286 (1134)
41 3e4b_A ALGK; tetratricopeptide 99.7 4.3E-15 1.5E-19 140.4 21.8 344 48-409 9-390 (452)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.4E-15 2.2E-19 129.7 20.9 240 152-400 18-269 (275)
43 3u4t_A TPR repeat-containing p 99.7 6E-15 2.1E-19 129.7 20.0 243 145-391 9-269 (272)
44 1ouv_A Conserved hypothetical 99.6 1.5E-13 5.2E-18 120.8 26.1 225 138-408 5-253 (273)
45 2h6f_A Protein farnesyltransfe 99.6 4E-14 1.4E-18 129.7 22.3 245 140-390 98-366 (382)
46 1ouv_A Conserved hypothetical 99.6 2.4E-13 8.2E-18 119.5 26.5 230 107-376 5-255 (273)
47 2pl2_A Hypothetical conserved 99.6 4E-14 1.4E-18 119.8 20.0 194 138-337 4-211 (217)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 3E-15 1E-19 131.8 13.6 244 17-298 16-269 (275)
49 2ho1_A Type 4 fimbrial biogene 99.6 9.2E-14 3.1E-18 120.6 21.8 196 210-407 38-239 (252)
50 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-13 6.2E-18 118.7 23.6 207 140-381 38-247 (252)
51 3u4t_A TPR repeat-containing p 99.6 1.2E-13 4.2E-18 121.2 22.4 228 176-407 5-251 (272)
52 2q7f_A YRRB protein; TPR, prot 99.6 2E-14 6.7E-19 124.0 16.9 139 243-384 94-234 (243)
53 2q7f_A YRRB protein; TPR, prot 99.6 2.9E-14 9.8E-19 123.0 17.7 197 208-407 22-223 (243)
54 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5E-18 116.9 21.7 196 209-406 8-211 (225)
55 4a1s_A PINS, partner of inscut 99.6 1.8E-14 6.1E-19 134.8 17.2 262 145-407 54-373 (411)
56 3sf4_A G-protein-signaling mod 99.6 6.9E-14 2.4E-18 130.4 21.1 129 277-405 189-335 (406)
57 2vq2_A PILW, putative fimbrial 99.6 4.3E-13 1.5E-17 114.0 22.4 209 140-383 9-222 (225)
58 3ro2_A PINS homolog, G-protein 99.6 8.7E-14 3E-18 126.0 19.2 263 144-407 10-333 (338)
59 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.9E-18 125.5 20.0 225 175-405 98-347 (382)
60 3vtx_A MAMA; tetratricopeptide 99.6 3.9E-13 1.3E-17 110.5 20.2 166 239-407 4-171 (184)
61 3sf4_A G-protein-signaling mod 99.6 4.6E-13 1.6E-17 124.9 21.9 304 40-395 7-365 (406)
62 4abn_A Tetratricopeptide repea 99.5 1.3E-13 4.5E-18 131.0 15.9 191 208-402 101-317 (474)
63 4a1s_A PINS, partner of inscut 99.5 8E-13 2.7E-17 123.6 19.6 277 45-374 51-374 (411)
64 3ulq_A Response regulator aspa 99.5 1.1E-12 3.8E-17 121.4 18.9 158 145-302 109-291 (383)
65 3ulq_A Response regulator aspa 99.5 5E-13 1.7E-17 123.8 16.1 226 180-406 109-368 (383)
66 3ro2_A PINS homolog, G-protein 99.5 2.1E-12 7.1E-17 116.8 19.6 278 45-374 8-334 (338)
67 2ond_A Cleavage stimulation fa 99.5 2.5E-11 8.6E-16 108.6 25.4 218 156-377 33-275 (308)
68 4e6h_A MRNA 3'-END-processing 99.5 1.8E-10 6.2E-15 112.6 33.2 399 4-406 64-570 (679)
69 3nf1_A KLC 1, kinesin light ch 99.5 2.6E-13 9E-18 121.5 12.2 240 140-405 28-306 (311)
70 3vtx_A MAMA; tetratricopeptide 99.5 2.9E-12 1E-16 105.2 16.7 167 208-377 4-175 (184)
71 1hz4_A MALT regulatory protein 99.4 1.6E-10 5.4E-15 106.5 28.7 263 144-406 19-322 (373)
72 3as5_A MAMA; tetratricopeptide 99.4 8.1E-12 2.8E-16 102.4 17.4 162 243-407 11-174 (186)
73 4abn_A Tetratricopeptide repea 99.4 4.7E-12 1.6E-16 120.3 18.0 205 59-265 85-317 (474)
74 3q15_A PSP28, response regulat 99.4 4.9E-11 1.7E-15 110.1 24.3 225 145-370 107-363 (378)
75 2ond_A Cleavage stimulation fa 99.4 4.2E-11 1.4E-15 107.1 22.7 213 191-408 33-272 (308)
76 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-11 4E-16 122.4 19.2 161 241-405 10-173 (723)
77 4e6h_A MRNA 3'-END-processing 99.4 1.4E-09 4.8E-14 106.4 33.1 383 22-408 48-535 (679)
78 3nf1_A KLC 1, kinesin light ch 99.4 5.4E-12 1.8E-16 112.9 13.0 170 42-235 27-221 (311)
79 4i17_A Hypothetical protein; T 99.4 3.2E-11 1.1E-15 102.8 16.9 189 208-407 6-210 (228)
80 1hz4_A MALT regulatory protein 99.4 1.5E-09 5E-14 99.9 29.1 267 11-303 19-321 (373)
81 3as5_A MAMA; tetratricopeptide 99.3 9.3E-11 3.2E-15 95.9 18.7 167 210-379 9-180 (186)
82 3q15_A PSP28, response regulat 99.3 2.6E-10 9E-15 105.2 23.2 218 117-337 110-362 (378)
83 4i17_A Hypothetical protein; T 99.3 8E-11 2.7E-15 100.2 18.2 205 172-387 5-224 (228)
84 3edt_B KLC 2, kinesin light ch 99.2 8.1E-11 2.8E-15 103.5 13.9 151 152-302 14-196 (283)
85 3mv2_B Coatomer subunit epsilo 99.2 2.6E-09 9E-14 92.9 22.3 179 193-379 85-289 (310)
86 3mv2_B Coatomer subunit epsilo 99.2 2.6E-09 9E-14 92.9 22.2 239 147-407 21-283 (310)
87 4gyw_A UDP-N-acetylglucosamine 99.2 2.2E-10 7.6E-15 113.3 15.8 164 6-201 9-172 (723)
88 3qky_A Outer membrane assembly 99.2 1.2E-09 4.2E-14 95.0 18.8 182 208-407 14-225 (261)
89 1qqe_A Vesicular transport pro 99.2 5.4E-10 1.9E-14 99.0 15.1 217 123-376 32-273 (292)
90 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.5E-14 84.3 14.8 126 279-406 5-132 (136)
91 3qky_A Outer membrane assembly 99.2 1.1E-09 3.9E-14 95.2 16.3 203 172-395 13-250 (261)
92 3edt_B KLC 2, kinesin light ch 99.2 1.1E-09 3.8E-14 96.2 16.2 162 17-202 12-197 (283)
93 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.1E-09 1.8E-13 88.7 19.6 183 209-409 4-216 (225)
94 1qqe_A Vesicular transport pro 99.1 6.7E-09 2.3E-13 91.9 20.5 197 109-338 38-267 (292)
95 3rjv_A Putative SEL1 repeat pr 99.1 9.7E-09 3.3E-13 86.1 19.6 172 228-408 5-199 (212)
96 3qou_A Protein YBBN; thioredox 99.1 3.3E-09 1.1E-13 93.5 17.4 175 227-405 104-283 (287)
97 4ga2_A E3 SUMO-protein ligase 99.1 1.7E-10 5.7E-15 91.0 7.2 140 248-392 5-149 (150)
98 2fo7_A Synthetic consensus TPR 99.1 6.4E-09 2.2E-13 79.8 15.9 131 242-375 3-135 (136)
99 2pzi_A Probable serine/threoni 99.1 7.3E-10 2.5E-14 110.1 12.3 168 220-392 402-583 (681)
100 2uy1_A Cleavage stimulation fa 99.0 1.5E-06 5E-11 82.5 33.5 347 8-371 17-412 (493)
101 2r5s_A Uncharacterized protein 99.0 3.5E-09 1.2E-13 85.9 13.1 159 243-405 9-172 (176)
102 2vsy_A XCC0866; transferase, g 99.0 5.8E-09 2E-13 101.7 16.1 160 222-384 2-169 (568)
103 3gyz_A Chaperone protein IPGC; 99.0 4.6E-09 1.6E-13 82.3 11.8 102 306-407 30-134 (151)
104 4ga2_A E3 SUMO-protein ligase 99.0 9.3E-10 3.2E-14 86.7 7.9 123 281-406 3-129 (150)
105 3urz_A Uncharacterized protein 99.0 2.3E-08 8E-13 83.5 16.2 130 215-348 60-195 (208)
106 2ifu_A Gamma-SNAP; membrane fu 99.0 2E-08 6.7E-13 89.6 15.9 219 152-399 4-254 (307)
107 3urz_A Uncharacterized protein 98.9 2.6E-08 8.8E-13 83.2 15.4 128 244-376 58-190 (208)
108 2uy1_A Cleavage stimulation fa 98.9 3.8E-08 1.3E-12 93.4 17.9 100 18-136 6-117 (493)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.9E-08 9.8E-13 83.2 15.4 126 278-408 9-152 (213)
110 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.4E-13 97.3 16.6 147 187-337 2-154 (568)
111 2vgx_A Chaperone SYCD; alterna 98.9 6.3E-09 2.1E-13 81.6 10.1 108 297-407 9-119 (148)
112 2pzi_A Probable serine/threoni 98.9 5.3E-08 1.8E-12 96.7 18.8 189 185-378 402-608 (681)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 6.9E-09 2.4E-13 92.5 11.3 197 186-404 3-222 (307)
114 3u3w_A Transcriptional activat 98.9 1.7E-07 5.9E-12 82.8 20.0 161 245-405 80-265 (293)
115 3dra_A Protein farnesyltransfe 98.9 5.1E-07 1.7E-11 79.3 22.5 214 153-404 47-285 (306)
116 2r5s_A Uncharacterized protein 98.9 5.8E-08 2E-12 78.6 15.3 54 82-135 11-67 (176)
117 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.9E-11 76.0 25.5 183 117-302 41-248 (306)
118 2qfc_A PLCR protein; TPR, HTH, 98.9 1.3E-07 4.4E-12 83.6 18.5 164 242-405 77-265 (293)
119 4gco_A Protein STI-1; structur 98.9 3.2E-08 1.1E-12 75.0 12.5 108 277-386 15-124 (126)
120 3qou_A Protein YBBN; thioredox 98.9 9.6E-08 3.3E-12 84.1 17.3 160 74-234 114-280 (287)
121 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.6E-08 1.6E-12 82.8 14.6 184 174-378 4-219 (225)
122 4gco_A Protein STI-1; structur 98.9 2.9E-08 1E-12 75.3 11.9 100 307-406 8-110 (126)
123 1a17_A Serine/threonine protei 98.9 5.7E-08 2E-12 77.6 14.2 128 276-405 14-145 (166)
124 3rjv_A Putative SEL1 repeat pr 98.9 8.6E-08 2.9E-12 80.2 15.7 171 24-204 4-198 (212)
125 2lni_A Stress-induced-phosphop 98.8 9.5E-08 3.2E-12 73.0 12.9 116 275-392 16-133 (133)
126 1na0_A Designed protein CTPR3; 98.8 1.4E-07 4.6E-12 71.1 13.6 115 275-391 9-125 (125)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.5E-07 1.2E-11 76.4 17.4 124 80-204 9-151 (213)
128 2vyi_A SGTA protein; chaperone 98.8 1E-07 3.4E-12 72.5 12.7 117 275-393 12-130 (131)
129 1p5q_A FKBP52, FK506-binding p 98.8 8.4E-08 2.9E-12 86.5 13.6 126 277-405 149-293 (336)
130 2xcb_A PCRH, regulatory protei 98.8 9.5E-08 3.2E-12 74.2 11.8 101 307-407 13-116 (142)
131 2e2e_A Formate-dependent nitri 98.8 4.4E-08 1.5E-12 79.4 10.0 120 286-407 21-145 (177)
132 2c2l_A CHIP, carboxy terminus 98.7 1.7E-08 5.7E-13 88.7 7.7 189 211-406 6-199 (281)
133 3upv_A Heat shock protein STI1 98.7 1.1E-07 3.8E-12 72.1 11.3 97 311-407 4-102 (126)
134 3u3w_A Transcriptional activat 98.7 1.1E-06 3.9E-11 77.5 18.9 61 242-302 198-264 (293)
135 2kck_A TPR repeat; tetratricop 98.7 1.7E-07 5.7E-12 69.1 10.3 99 310-408 5-108 (112)
136 3q49_B STIP1 homology and U bo 98.7 3.5E-07 1.2E-11 70.3 12.3 99 309-407 7-107 (137)
137 1hxi_A PEX5, peroxisome target 98.7 1.4E-07 5E-12 70.8 9.5 95 313-407 19-115 (121)
138 4f3v_A ESX-1 secretion system 98.7 5.3E-07 1.8E-11 77.4 14.0 126 279-407 106-238 (282)
139 3sz7_A HSC70 cochaperone (SGT) 98.7 2.2E-07 7.6E-12 74.1 11.2 107 275-383 11-119 (164)
140 4f3v_A ESX-1 secretion system 98.6 6.2E-07 2.1E-11 77.0 14.2 136 244-384 106-248 (282)
141 3gw4_A Uncharacterized protein 98.6 8.9E-07 3.1E-11 73.2 14.5 153 252-405 4-175 (203)
142 2fbn_A 70 kDa peptidylprolyl i 98.6 3.7E-07 1.2E-11 75.4 12.0 96 312-407 89-187 (198)
143 3gw4_A Uncharacterized protein 98.6 4E-07 1.4E-11 75.3 12.1 83 120-202 4-94 (203)
144 2lni_A Stress-induced-phosphop 98.6 4.6E-07 1.6E-11 69.0 11.5 98 309-406 14-113 (133)
145 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4.1E-12 74.2 8.2 105 275-381 21-127 (148)
146 2qfc_A PLCR protein; TPR, HTH, 98.6 7.7E-07 2.6E-11 78.6 14.3 162 41-202 74-265 (293)
147 1na0_A Designed protein CTPR3; 98.6 6.4E-07 2.2E-11 67.2 11.9 97 311-407 9-107 (125)
148 4gcn_A Protein STI-1; structur 98.6 3.3E-07 1.1E-11 69.5 10.2 94 312-405 9-111 (127)
149 1elw_A TPR1-domain of HOP; HOP 98.6 9.6E-07 3.3E-11 65.5 12.6 108 277-386 6-115 (118)
150 1elw_A TPR1-domain of HOP; HOP 98.6 6.3E-07 2.1E-11 66.6 11.5 97 311-407 4-102 (118)
151 3q7a_A Farnesyltransferase alp 98.6 6.6E-05 2.2E-09 66.7 26.0 174 148-326 63-257 (349)
152 2dba_A Smooth muscle cell asso 98.6 1E-06 3.4E-11 68.6 13.0 95 311-405 28-127 (148)
153 2c2l_A CHIP, carboxy terminus 98.6 7.5E-08 2.6E-12 84.5 6.7 97 5-104 3-99 (281)
154 3upv_A Heat shock protein STI1 98.6 7.6E-07 2.6E-11 67.3 11.5 111 276-388 5-123 (126)
155 2e2e_A Formate-dependent nitri 98.6 6.9E-07 2.4E-11 72.2 11.8 127 251-380 21-152 (177)
156 3gyz_A Chaperone protein IPGC; 98.6 6.7E-07 2.3E-11 69.9 11.1 100 276-377 37-138 (151)
157 2dba_A Smooth muscle cell asso 98.6 1.7E-06 5.9E-11 67.2 13.6 112 274-388 27-144 (148)
158 2xcb_A PCRH, regulatory protei 98.5 6.5E-07 2.2E-11 69.4 10.8 109 276-386 19-129 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.6E-11 69.5 12.5 97 310-406 10-108 (164)
160 2vyi_A SGTA protein; chaperone 98.5 1.2E-06 4E-11 66.4 11.5 98 310-407 11-110 (131)
161 1a17_A Serine/threonine protei 98.5 3.3E-06 1.1E-10 67.1 14.3 62 141-203 15-76 (166)
162 3q7a_A Farnesyltransferase alp 98.5 0.00013 4.4E-09 64.8 25.3 85 18-105 66-153 (349)
163 2hr2_A Hypothetical protein; a 98.5 7.9E-07 2.7E-11 68.9 9.4 63 344-406 58-131 (159)
164 3q49_B STIP1 homology and U bo 98.5 1.8E-06 6.3E-11 66.2 11.2 113 273-387 7-126 (137)
165 2xev_A YBGF; tetratricopeptide 98.4 1.3E-06 4.4E-11 66.2 9.5 90 317-406 8-105 (129)
166 4b4t_Q 26S proteasome regulato 98.4 9.4E-06 3.2E-10 75.9 17.0 163 243-405 58-244 (434)
167 3k9i_A BH0479 protein; putativ 98.4 3.3E-07 1.1E-11 68.4 5.7 83 324-406 3-90 (117)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.1E-06 1.4E-10 78.9 14.4 95 311-405 317-414 (457)
169 1elr_A TPR2A-domain of HOP; HO 98.4 1.6E-06 5.3E-11 65.7 9.5 95 312-406 5-108 (131)
170 3rkv_A Putative peptidylprolyl 98.4 1.6E-06 5.5E-11 68.9 9.5 64 343-406 63-126 (162)
171 1wao_1 Serine/threonine protei 98.4 1.1E-06 3.8E-11 83.2 9.8 119 282-402 13-135 (477)
172 1elr_A TPR2A-domain of HOP; HO 98.3 6.4E-06 2.2E-10 62.3 11.7 110 277-389 6-124 (131)
173 2kck_A TPR repeat; tetratricop 98.3 4E-06 1.4E-10 61.4 10.3 99 277-377 8-111 (112)
174 3ro3_A PINS homolog, G-protein 98.3 5.7E-06 2E-10 65.2 11.4 129 277-405 11-157 (164)
175 2xev_A YBGF; tetratricopeptide 98.3 1.4E-05 4.8E-10 60.4 13.0 102 281-385 8-118 (129)
176 1hxi_A PEX5, peroxisome target 98.3 1.5E-06 5.1E-11 65.2 7.2 96 7-105 18-113 (121)
177 2if4_A ATFKBP42; FKBP-like, al 98.3 1.9E-06 6.4E-11 77.7 9.1 145 242-406 181-328 (338)
178 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.9E-10 72.5 14.1 129 241-371 148-293 (336)
179 1ihg_A Cyclophilin 40; ppiase 98.3 6.3E-06 2.1E-10 75.1 12.5 90 310-399 272-363 (370)
180 3dss_A Geranylgeranyl transfer 98.3 0.00018 6.2E-09 63.6 21.3 78 191-269 91-174 (331)
181 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.6E-10 66.5 11.9 63 344-406 89-151 (198)
182 3ma5_A Tetratricopeptide repea 98.2 7.7E-06 2.6E-10 58.8 9.5 66 341-406 5-70 (100)
183 3dss_A Geranylgeranyl transfer 98.2 0.00042 1.4E-08 61.2 22.1 179 225-406 90-304 (331)
184 3n71_A Histone lysine methyltr 98.2 1.2E-05 4.1E-10 75.6 12.9 125 284-408 318-466 (490)
185 3rkv_A Putative peptidylprolyl 98.2 4.3E-06 1.5E-10 66.4 8.5 77 311-387 63-142 (162)
186 1wao_1 Serine/threonine protei 98.2 2.1E-05 7.3E-10 74.3 14.5 115 218-335 15-134 (477)
187 4b4t_Q 26S proteasome regulato 98.2 3.8E-05 1.3E-09 71.7 15.9 158 248-405 12-203 (434)
188 3k9i_A BH0479 protein; putativ 98.2 2.4E-06 8.4E-11 63.5 6.0 92 288-380 3-98 (117)
189 4gcn_A Protein STI-1; structur 98.2 2.5E-05 8.6E-10 58.9 11.6 61 141-202 10-70 (127)
190 3ro3_A PINS homolog, G-protein 98.1 1.3E-05 4.4E-10 63.1 9.5 131 243-373 12-159 (164)
191 2hr2_A Hypothetical protein; a 98.1 6.1E-06 2.1E-10 63.9 7.0 103 281-386 17-145 (159)
192 2l6j_A TPR repeat-containing p 98.1 6.6E-06 2.3E-10 60.3 7.0 92 310-401 3-102 (111)
193 1dce_A Protein (RAB geranylger 98.1 0.00017 5.8E-09 69.6 18.0 169 224-395 44-244 (567)
194 2kat_A Uncharacterized protein 98.1 2.8E-05 9.6E-10 57.4 9.9 77 330-406 4-82 (115)
195 1na3_A Designed protein CTPR2; 98.1 2.3E-05 7.9E-10 54.8 8.9 81 311-391 9-91 (91)
196 2if4_A ATFKBP42; FKBP-like, al 98.0 1.9E-05 6.4E-10 71.1 9.1 151 210-377 180-333 (338)
197 3bee_A Putative YFRE protein; 98.0 6.1E-05 2.1E-09 52.9 9.7 70 340-409 3-75 (93)
198 1klx_A Cysteine rich protein B 98.0 0.00012 4.2E-09 56.0 12.3 111 290-408 10-128 (138)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.8E-05 1.6E-09 71.6 11.3 65 343-407 317-381 (457)
200 1zu2_A Mitochondrial import re 97.9 1E-05 3.5E-10 62.5 4.9 84 324-407 15-121 (158)
201 3lvg_A Clathrin heavy chain 1; 97.9 5E-07 1.7E-11 81.5 -2.8 238 6-262 54-326 (624)
202 2l6j_A TPR repeat-containing p 97.9 4.6E-05 1.6E-09 55.6 8.3 66 342-407 3-68 (111)
203 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.6E-09 66.3 12.0 89 139-229 273-361 (370)
204 1na3_A Designed protein CTPR2; 97.8 0.00015 5.1E-09 50.5 8.8 66 342-407 8-73 (91)
205 3n71_A Histone lysine methyltr 97.7 0.00025 8.6E-09 66.7 10.8 62 242-303 395-463 (490)
206 1klx_A Cysteine rich protein B 97.6 0.0013 4.4E-08 50.2 12.9 112 254-374 9-128 (138)
207 1dce_A Protein (RAB geranylger 97.6 0.0014 4.7E-08 63.2 15.9 150 254-407 43-222 (567)
208 2kat_A Uncharacterized protein 97.6 0.0003 1E-08 51.7 9.0 80 294-375 4-85 (115)
209 3qww_A SET and MYND domain-con 97.6 0.00026 8.8E-09 65.5 9.3 83 323-405 310-410 (433)
210 3qwp_A SET and MYND domain-con 97.5 0.00078 2.7E-08 62.4 11.7 116 318-451 294-427 (429)
211 2kc7_A BFR218_protein; tetratr 97.5 0.00036 1.2E-08 49.5 7.5 55 351-405 8-63 (99)
212 1wy6_A Hypothetical protein ST 97.4 0.019 6.4E-07 42.2 15.7 141 250-409 17-157 (172)
213 1pc2_A Mitochondria fission pr 97.4 0.0018 6.1E-08 49.4 10.1 68 309-376 30-104 (152)
214 1zu2_A Mitochondrial import re 97.4 0.00021 7.3E-09 55.1 5.1 110 290-408 17-149 (158)
215 3mkq_A Coatomer beta'-subunit; 97.3 0.016 5.6E-07 58.7 19.9 164 53-265 610-774 (814)
216 3qww_A SET and MYND domain-con 97.3 0.0018 6.3E-08 59.8 11.1 94 287-380 310-424 (433)
217 2kc7_A BFR218_protein; tetratr 97.2 0.0019 6.7E-08 45.6 8.9 79 317-403 6-87 (99)
218 3qwp_A SET and MYND domain-con 97.2 0.0036 1.2E-07 57.9 12.6 102 281-382 293-415 (429)
219 3ma5_A Tetratricopeptide repea 97.2 0.0013 4.6E-08 46.8 7.4 60 242-302 9-68 (100)
220 3ly7_A Transcriptional activat 97.1 0.016 5.6E-07 51.5 15.0 65 341-406 275-339 (372)
221 3mkq_A Coatomer beta'-subunit; 97.0 0.038 1.3E-06 56.0 19.3 167 15-235 608-775 (814)
222 2v5f_A Prolyl 4-hydroxylase su 96.8 0.011 3.8E-07 42.2 9.4 73 312-384 6-87 (104)
223 3ly7_A Transcriptional activat 96.8 0.017 5.9E-07 51.3 12.0 140 236-377 190-344 (372)
224 3u64_A Protein TP_0956; tetrat 96.6 0.0083 2.9E-07 51.1 8.7 87 327-413 179-276 (301)
225 2v5f_A Prolyl 4-hydroxylase su 96.6 0.014 4.6E-07 41.8 8.5 66 341-406 3-75 (104)
226 3bee_A Putative YFRE protein; 96.5 0.033 1.1E-06 38.7 9.7 76 308-384 3-83 (93)
227 1qsa_A Protein (soluble lytic 96.4 0.74 2.5E-05 44.5 26.2 114 255-371 229-347 (618)
228 1pc2_A Mitochondria fission pr 96.4 0.017 5.9E-07 44.0 8.4 65 341-405 30-99 (152)
229 3mkq_B Coatomer subunit alpha; 96.3 0.094 3.2E-06 41.0 12.4 99 86-197 14-112 (177)
230 3lvg_A Clathrin heavy chain 1; 96.3 9.7E-05 3.3E-09 67.0 -5.0 237 107-363 53-324 (624)
231 1nzn_A CGI-135 protein, fissio 96.2 0.027 9.4E-07 41.2 8.0 89 289-379 15-110 (126)
232 3mkq_B Coatomer subunit alpha; 96.1 0.36 1.2E-05 37.7 15.8 75 118-203 15-89 (177)
233 1y8m_A FIS1; mitochondria, unk 96.0 0.29 9.9E-06 36.5 12.8 67 340-406 36-106 (144)
234 1nzn_A CGI-135 protein, fissio 95.5 0.16 5.4E-06 37.2 9.7 21 317-337 80-100 (126)
235 4gns_B Protein CSD3, chitin bi 95.4 0.071 2.4E-06 52.5 10.1 55 350-404 344-398 (754)
236 3u64_A Protein TP_0956; tetrat 94.8 0.32 1.1E-05 41.5 10.9 66 141-206 201-272 (301)
237 1wy6_A Hypothetical protein ST 94.8 0.87 3E-05 33.6 16.0 148 44-206 7-157 (172)
238 4h7y_A Dual specificity protei 94.7 0.27 9.1E-06 37.1 9.0 52 357-408 74-125 (161)
239 3o48_A Mitochondria fission 1 94.4 0.34 1.2E-05 35.6 8.9 66 340-405 37-106 (134)
240 4h7y_A Dual specificity protei 93.8 0.61 2.1E-05 35.1 9.2 60 324-383 73-134 (161)
241 3ffl_A Anaphase-promoting comp 93.2 0.87 3E-05 35.0 9.6 69 2-70 16-91 (167)
242 2wpv_A GET4, UPF0363 protein Y 93.1 3.9 0.00013 35.4 20.9 182 86-304 22-217 (312)
243 4ady_A RPN2, 26S proteasome re 92.8 9.3 0.00032 38.7 20.6 123 221-346 536-664 (963)
244 2ff4_A Probable regulatory pro 92.6 0.43 1.5E-05 43.3 8.6 70 345-414 173-247 (388)
245 4fhn_B Nucleoporin NUP120; pro 92.3 3.2 0.00011 43.8 15.8 81 211-293 901-989 (1139)
246 2uwj_G Type III export protein 92.0 2 7E-05 29.4 9.6 80 81-177 26-105 (115)
247 2p58_C Putative type III secre 91.8 2.2 7.5E-05 29.4 10.0 80 81-177 27-106 (116)
248 4b4t_P 26S proteasome regulato 91.7 8.1 0.00028 35.7 16.9 90 315-404 141-245 (445)
249 4gns_B Protein CSD3, chitin bi 91.4 0.49 1.7E-05 46.7 7.8 120 13-135 255-398 (754)
250 3ffl_A Anaphase-promoting comp 90.9 1.6 5.4E-05 33.6 8.6 26 313-338 124-149 (167)
251 4ady_A RPN2, 26S proteasome re 90.3 17 0.00058 36.9 24.2 25 80-104 233-257 (963)
252 1v54_E Cytochrome C oxidase po 90.3 1.8 6E-05 30.0 7.4 64 255-320 25-88 (109)
253 4fhn_B Nucleoporin NUP120; pro 90.1 14 0.00048 38.9 17.9 51 83-134 818-868 (1139)
254 1v54_E Cytochrome C oxidase po 89.9 2.7 9.2E-05 29.1 8.0 50 336-385 38-87 (109)
255 3o48_A Mitochondria fission 1 89.1 1.2 4E-05 32.8 6.3 72 309-380 38-115 (134)
256 1y8m_A FIS1; mitochondria, unk 89.1 4.5 0.00015 30.2 9.5 73 308-380 36-114 (144)
257 2ff4_A Probable regulatory pro 89.0 3.3 0.00011 37.5 10.9 71 244-315 175-249 (388)
258 3lpz_A GET4 (YOR164C homolog); 87.2 14 0.00049 32.2 25.2 181 86-303 21-215 (336)
259 3txn_A 26S proteasome regulato 86.4 18 0.00062 32.5 20.3 289 79-408 21-345 (394)
260 2y69_E Cytochrome C oxidase su 86.0 4 0.00014 29.9 7.4 64 255-320 68-131 (152)
261 2uwj_G Type III export protein 85.7 6.8 0.00023 26.9 8.9 86 189-279 21-106 (115)
262 3ltm_A Alpha-REP4; protein eng 85.6 13 0.00043 29.9 19.5 17 76-92 32-48 (211)
263 1zbp_A Hypothetical protein VP 85.2 16 0.00054 30.7 12.1 119 249-378 6-135 (273)
264 2p58_C Putative type III secre 85.1 7.4 0.00025 26.8 9.5 86 189-279 22-107 (116)
265 3ltj_A Alpharep-4; protein eng 85.0 13 0.00044 29.5 18.8 18 136-153 87-104 (201)
266 3esl_A Checkpoint serine/threo 84.0 14 0.00049 29.4 10.5 55 356-410 92-148 (202)
267 2y69_E Cytochrome C oxidase su 83.8 7.7 0.00026 28.5 8.0 52 334-385 79-130 (152)
268 1zbp_A Hypothetical protein VP 83.3 3.1 0.00011 34.9 6.7 57 320-376 6-64 (273)
269 3lpz_A GET4 (YOR164C homolog); 82.6 24 0.00083 30.8 23.4 166 214-405 40-215 (336)
270 3ltm_A Alpha-REP4; protein eng 82.3 17 0.0006 29.0 17.8 80 40-123 31-110 (211)
271 3ltj_A Alpharep-4; protein eng 82.2 17 0.00058 28.8 19.4 73 114-190 34-106 (201)
272 2wpv_A GET4, UPF0363 protein Y 78.5 32 0.0011 29.7 23.0 167 213-405 37-216 (312)
273 1wdy_A 2-5A-dependent ribonucl 75.4 35 0.0012 28.5 12.2 119 11-136 7-130 (285)
274 4b4t_R RPN7, 26S proteasome re 74.2 16 0.00055 33.5 9.4 60 278-337 134-194 (429)
275 4b4t_S RPN3, 26S proteasome re 74.1 3.2 0.00011 38.7 4.5 60 8-71 233-299 (523)
276 3eiq_C Programmed cell death p 73.1 35 0.0012 30.2 10.8 25 278-302 220-244 (358)
277 3esl_A Checkpoint serine/threo 72.2 35 0.0012 27.2 10.2 56 152-207 92-148 (202)
278 4b4t_R RPN7, 26S proteasome re 71.6 27 0.00091 32.0 10.2 95 211-305 133-238 (429)
279 3txn_A 26S proteasome regulato 71.2 58 0.002 29.3 26.7 160 214-377 104-289 (394)
280 4a1g_A Mitotic checkpoint seri 69.4 34 0.0012 25.8 9.4 51 360-410 82-134 (152)
281 4b4t_P 26S proteasome regulato 67.8 75 0.0026 29.2 24.1 95 243-337 140-244 (445)
282 2r9g_A AAA ATPase, central reg 65.9 47 0.0016 26.4 8.8 61 144-205 16-84 (204)
283 2wvi_A Mitotic checkpoint seri 64.5 46 0.0016 25.5 9.6 49 362-410 79-129 (164)
284 3ctd_A Putative ATPase, AAA fa 58.3 59 0.002 26.0 8.2 64 142-205 35-106 (213)
285 3bge_A Predicted ATPase; struc 57.6 61 0.0021 25.7 8.0 45 144-188 9-56 (201)
286 4b4t_S RPN3, 26S proteasome re 57.5 34 0.0012 32.0 7.8 63 275-337 231-296 (523)
287 2qx5_A Nucleoporin NIC96; mRNA 56.4 1.5E+02 0.0051 28.8 13.9 219 145-403 300-564 (661)
288 4a1g_A Mitotic checkpoint seri 53.8 69 0.0024 24.2 9.4 50 158-207 84-134 (152)
289 1oyz_A Hypothetical protein YI 50.2 1.1E+02 0.0038 25.5 22.3 80 172-255 140-221 (280)
290 1oyz_A Hypothetical protein YI 49.9 1.1E+02 0.0038 25.4 22.5 18 207-224 140-157 (280)
291 2d2s_A Exocyst complex compone 48.8 75 0.0026 26.1 7.9 23 145-167 24-46 (235)
292 2wvi_A Mitotic checkpoint seri 48.5 90 0.0031 23.9 9.9 52 158-209 79-131 (164)
293 1k1a_A B-cell lymphoma 3-encod 48.4 96 0.0033 24.9 8.9 12 19-30 19-30 (241)
294 4ets_A Ferric uptake regulatio 47.4 51 0.0017 25.2 6.3 71 22-93 13-85 (162)
295 2d2s_A Exocyst complex compone 47.0 1E+02 0.0034 25.4 8.4 87 247-337 25-117 (235)
296 1wdy_A 2-5A-dependent ribonucl 46.5 1.2E+02 0.0042 24.9 10.8 13 323-335 228-240 (285)
297 2pk8_A Uncharacterized protein 46.4 10 0.00034 25.4 1.8 28 434-461 13-40 (103)
298 4gq2_M Nucleoporin NUP120; bet 46.4 1.7E+02 0.0057 30.1 11.7 86 281-372 816-926 (950)
299 2ion_A PDCD4, programmed cell 45.9 94 0.0032 23.4 8.4 62 112-173 13-79 (152)
300 1qsa_A Protein (soluble lytic 44.8 2.2E+02 0.0076 27.4 32.9 240 154-411 229-484 (618)
301 3hra_A Ankyrin repeat family p 44.6 89 0.003 24.2 7.9 80 17-102 13-94 (201)
302 2zu6_B Programmed cell death p 42.9 1.6E+02 0.0055 25.3 10.0 61 243-304 169-231 (307)
303 2nsz_A Programmed cell death p 42.4 96 0.0033 22.5 9.8 62 112-173 11-77 (129)
304 1oai_A Nuclear RNA export fact 42.4 17 0.00057 22.3 2.2 25 19-43 33-57 (59)
305 3bqo_A Telomeric repeat-bindin 42.3 1.3E+02 0.0043 23.9 8.1 36 350-385 124-159 (211)
306 2b7e_A PRE-mRNA processing pro 41.0 21 0.0007 21.8 2.4 30 22-52 2-31 (59)
307 1ya0_A SMG-7 transcript varian 40.5 1.2E+02 0.004 28.4 8.7 43 356-398 165-207 (497)
308 4gq2_M Nucleoporin NUP120; bet 39.5 3.3E+02 0.011 27.9 12.7 48 176-223 899-950 (950)
309 3ygs_P Procaspase 9; apoptosis 39.2 43 0.0015 22.9 4.3 38 223-260 51-88 (97)
310 3bu8_A Telomeric repeat-bindin 38.9 1.4E+02 0.0049 24.0 7.5 23 281-303 120-142 (235)
311 1n11_A Ankyrin; clathrin, BAND 38.8 1.9E+02 0.0065 26.0 10.1 295 47-368 16-333 (437)
312 3kea_A K1L; tropism, ANK repea 38.0 1.3E+02 0.0045 25.2 8.3 91 318-412 133-223 (285)
313 4aez_C MAD3, mitotic spindle c 37.7 1.3E+02 0.0045 24.3 7.4 50 360-409 131-182 (223)
314 3eu9_A Huntingtin-interacting 37.1 1.1E+02 0.0039 24.3 7.6 14 88-101 50-63 (240)
315 2fe3_A Peroxide operon regulat 36.2 1.3E+02 0.0045 22.3 7.5 62 163-225 11-72 (145)
316 1n11_A Ankyrin; clathrin, BAND 36.1 1.3E+02 0.0044 27.2 8.4 359 13-405 18-401 (437)
317 2xig_A Ferric uptake regulatio 35.2 1.4E+02 0.0047 22.3 7.6 62 163-225 16-77 (150)
318 2ion_A PDCD4, programmed cell 34.9 1.4E+02 0.0049 22.4 8.6 62 213-274 13-79 (152)
319 2w57_A Ferric uptake regulatio 34.2 1.4E+02 0.0049 22.2 7.3 62 163-225 6-68 (150)
320 3eyy_A Putative iron uptake re 33.1 1.3E+02 0.0044 22.3 6.5 61 163-225 8-68 (145)
321 1mzb_A Ferric uptake regulatio 32.9 1.4E+02 0.0049 21.7 7.5 61 164-225 8-69 (136)
322 3jxi_A Vanilloid receptor-rela 32.0 55 0.0019 26.9 4.8 89 15-105 11-118 (260)
323 2fe3_A Peroxide operon regulat 31.7 1.1E+02 0.0039 22.6 6.0 60 265-326 12-71 (145)
324 4aez_C MAD3, mitotic spindle c 31.4 2.1E+02 0.0072 23.2 9.0 53 156-208 131-184 (223)
325 2nsz_A Programmed cell death p 30.8 1.5E+02 0.0052 21.4 10.0 62 213-274 11-77 (129)
326 3u84_A Menin; MLL, JUND, ledgf 29.6 1.6E+02 0.0055 26.5 7.0 30 376-405 317-346 (550)
327 1k1a_A B-cell lymphoma 3-encod 29.2 1.8E+02 0.006 23.2 7.5 177 49-234 13-205 (241)
328 3kea_A K1L; tropism, ANK repea 29.1 1.3E+02 0.0043 25.3 6.7 175 50-234 36-217 (285)
329 1ug3_A EIF4GI, eukaryotic prot 29.0 2.4E+02 0.0083 24.6 8.5 144 81-234 15-166 (339)
330 1bpo_A Protein (clathrin); cla 28.5 2.8E+02 0.0097 25.5 8.7 24 211-234 363-386 (494)
331 2fu4_A Ferric uptake regulatio 27.4 1.3E+02 0.0043 19.4 7.4 62 163-225 6-68 (83)
332 3ygs_P Procaspase 9; apoptosis 27.2 99 0.0034 21.0 4.5 34 92-125 52-85 (97)
333 3eu9_A Huntingtin-interacting 27.1 1.1E+02 0.0036 24.5 5.7 123 2-133 3-131 (240)
334 2crb_A Nuclear receptor bindin 26.5 1E+02 0.0035 20.8 4.1 23 380-402 18-40 (97)
335 3b7b_A Euchromatic histone-lys 26.5 2E+02 0.0069 22.8 7.3 18 285-302 217-234 (237)
336 4ets_A Ferric uptake regulatio 26.4 1.9E+02 0.0065 21.9 6.5 69 156-225 14-85 (162)
337 2xig_A Ferric uptake regulatio 26.0 1.7E+02 0.0059 21.8 6.1 59 266-326 18-76 (150)
338 3e3v_A Regulatory protein RECX 25.8 2.3E+02 0.0079 21.9 8.4 24 314-337 139-163 (177)
339 3bu8_A Telomeric repeat-bindin 25.7 2.6E+02 0.009 22.5 10.4 48 58-105 88-142 (235)
340 4gq4_A Menin; tumor suppressor 25.6 1.9E+02 0.0063 26.1 6.7 58 376-453 302-359 (489)
341 3eiq_C Programmed cell death p 25.4 3.5E+02 0.012 23.8 16.5 56 80-135 57-116 (358)
342 3hra_A Ankyrin repeat family p 25.2 2.2E+02 0.0075 21.8 7.1 14 220-233 114-127 (201)
343 2ijq_A Hypothetical protein; s 24.9 2.3E+02 0.0079 21.6 6.7 30 56-85 46-77 (161)
344 2cfu_A SDSA1; SDS-hydrolase, l 24.3 1.9E+02 0.0067 28.1 7.6 62 328-392 437-498 (658)
345 3mwm_A ZUR, putative metal upt 23.8 1.4E+02 0.0047 21.9 5.1 47 46-92 17-63 (139)
346 2o03_A Probable zinc uptake re 23.4 1.4E+02 0.0047 21.6 5.0 44 246-289 16-59 (131)
347 2rfa_A Transient receptor pote 22.9 2.8E+02 0.0096 21.8 8.8 83 13-105 7-100 (232)
348 2pnn_A Transient receptor pote 22.9 1.8E+02 0.0061 23.9 6.5 99 4-105 9-126 (273)
349 1oeg_A Apolipoprotein E; siali 22.0 34 0.0012 16.8 0.9 19 435-453 2-20 (26)
350 3aji_A 26S proteasome non-ATPa 22.0 2.9E+02 0.01 21.7 7.9 84 13-102 10-95 (231)
351 1wgl_A TOLL-interacting protei 21.3 1.4E+02 0.0048 18.1 3.8 15 90-104 36-50 (59)
352 2o03_A Probable zinc uptake re 21.3 1.5E+02 0.005 21.4 4.8 46 47-92 15-60 (131)
353 3l6a_A Eukaryotic translation 20.9 4.3E+02 0.015 23.3 14.4 26 176-201 14-39 (364)
354 3eyy_A Putative iron uptake re 20.8 2E+02 0.0067 21.3 5.5 34 291-325 33-66 (145)
355 3mwm_A ZUR, putative metal upt 20.6 1.7E+02 0.0059 21.4 5.1 47 179-225 18-64 (139)
356 2zu6_B Programmed cell death p 20.5 4.1E+02 0.014 22.8 8.3 25 9-33 6-30 (307)
357 3jxi_A Vanilloid receptor-rela 20.4 68 0.0023 26.3 3.2 54 49-102 9-71 (260)
358 3ph0_C ASCG; type III secretio 20.3 1.4E+02 0.0049 17.9 3.4 9 88-96 51-59 (61)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-38 Score=314.12 Aligned_cols=397 Identities=10% Similarity=-0.053 Sum_probs=337.5
Q ss_pred CCCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 1 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
+|.|++..|+.++..+.+.|++++|+.+|++|. . ..|+..++..++.+|.+.|++++|..+++.+... +++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL-D--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHH-h--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 356788899999999999999999999999998 3 3578889999999999999999999999987653 5688899
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCC-------------------eehHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKD-------------------EVSYSAIISGYMVHGFVEKAMDLFQVMKR----- 136 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~----- 136 (468)
+.++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.|++++|++.|+++.+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999654333 67888999999999888888888876632
Q ss_pred ---------------------------------------------------------------------CCHhHHHHHHH
Q 012234 137 ---------------------------------------------------------------------PGLSTWNAVIS 147 (468)
Q Consensus 137 ---------------------------------------------------------------------~~~~~~~~l~~ 147 (468)
++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 34456777778
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 227 (468)
+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888887654 3466677788888888888888888888887654 5567888899999999999999
Q ss_pred HHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 228 AQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 228 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
|..+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998754 456799999999999999999999999998863 447788999999999999999999999999864
Q ss_pred cCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKM-------PVKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
.+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|.+.++++.+.+|+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 2446889999999999999999999999987 34676 789999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=292.53 Aligned_cols=382 Identities=9% Similarity=-0.010 Sum_probs=334.5
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCC--------------CCCCCcchHHHHHHHhhccCChHHHHHHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP--------------VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 68 (468)
.+|+.+|+.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.++.+.|++++|.++|++|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678899999999999999999999999654232 23446789999999999999999999999999
Q ss_pred HHhCCCCchHHHHH--------------------------------------HHHHHHhCCCHHHHHHHHhhcCC--CCe
Q 012234 69 IESHIKMDLWICNA--------------------------------------LIGMYAKCGSLDYARALLDEMSD--KDE 108 (468)
Q Consensus 69 ~~~~~~~~~~~~~~--------------------------------------l~~~~~~~g~~~~A~~~~~~~~~--~~~ 108 (468)
.+.++. +...+.. ++..|.+.|++++|.++|+++.+ ++.
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 987643 3333333 25566678999999999999988 788
Q ss_pred ehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012234 109 VSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185 (468)
Q Consensus 109 ~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 185 (468)
.+|+.++.+|.+.|++++|..+|+++.+ .+..+++.++.++.+.|++++|..+++++.... +.+..++..++..|.
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999864 466789999999999999999999999998653 567889999999999
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++++|+++|+++.+ .+..+|+.++.+|.+.|++++|.++
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999865 45677999999999999999999999998764 4678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc---CCCCC--HhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY---GIQPS--VEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998863 4478899999999999999999999999997642 55676 789999999999999999999999987
Q ss_pred C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 338 P--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 338 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
. .+.+..+|..+..+|...|++++|.+.++++.+.+|+++..+..++.+|.
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 34478999999999999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1e-29 Score=236.99 Aligned_cols=373 Identities=13% Similarity=0.093 Sum_probs=321.5
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 012234 12 MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG 91 (468)
Q Consensus 12 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 91 (468)
+...+.+.|++++|++.++.+. ... |.+...+..+...+...|++++|...++..++.. +.+..++..+..+|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~-~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW-RQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3556778899999999999988 332 3445567777778889999999999999998876 447889999999999999
Q ss_pred CHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 92 SLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 92 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
++++|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998764 4 456799999999999999999999998864 44 456788888999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcch
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLII 242 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 242 (468)
.+.. +.+..++..+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|...|++..+ .+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 8863 4456788999999999999999999999999876 45567888899999999999999999987654 35678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+. .+.+..++..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 8999999999999999999999999863 335778899999999999999999999999864 3557889999999999
Q ss_pred ccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 323 RARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
+.|++++|.+.++++. ..| +..++..+...+...|++++|...++++.+..|.++.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999873 344 578999999999999999999999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.1e-28 Score=228.09 Aligned_cols=353 Identities=14% Similarity=0.103 Sum_probs=309.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCH
Q 012234 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFV 124 (468)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 124 (468)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999988643 667788888999999999999999987664 3567899999999999999
Q ss_pred HHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 125 EKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 125 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++|+..|+++.+ | +..+|..+..++.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998864 4 45579999999999999999999999998863 3344567778888999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
+.. +.+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 44577889999999999999999999999865 345678889999999999999999999998752 3357888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASIS 356 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (468)
..+..++...|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.|+++. .+.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999864 23357789999999999999999999999883 456789999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|...++++.+..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.2e-29 Score=237.72 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------hhhHHHHHHHHHHcCCCCchh
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN---------LKGGKEIHGYAVKNRYDRNIY 210 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 210 (468)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 577899999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
+|+.||.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998874 6888999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (468)
+.|++++|.++|++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 999999999999999877 999999999999988875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5e-29 Score=236.39 Aligned_cols=178 Identities=12% Similarity=0.176 Sum_probs=130.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---------HHHHHHHHhhcCC----CCeehH
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS---------LDYARALLDEMSD----KDEVSY 111 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~----~~~~~~ 111 (468)
++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.. ||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 455555555555555555555555555555555555555555554432 4555555555542 455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 187 (468)
+++|.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 555555555555555666665554 3899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012234 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222 (468)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (468)
|+.++|.+++++|.+.+..|+..||+.++..++..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998888764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=217.67 Aligned_cols=393 Identities=9% Similarity=-0.020 Sum_probs=318.3
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...|..+...+.+.|++++|+..|+++. ... |+...|..+..++...|++++|...++.+++.++. +..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWAL-ELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-hcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHH
Confidence 4567788899999999999999999998 433 78999999999999999999999999999998743 7788999999
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHH-------------------------------
Q 012234 86 MYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLF------------------------------- 131 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~------------------------------- 131 (468)
++.+.|++++|...|+++... +......++..+........+.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999987642 3333333333333222222211111
Q ss_pred -------hhCCC---------C-CHhHHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCC--------CCHHHHH
Q 012234 132 -------QVMKR---------P-GLSTWNAVISGLVQ---NNRHEAVLDLVREMQA-----SGVR--------PNAVTIS 178 (468)
Q Consensus 132 -------~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~--------p~~~~~~ 178 (468)
..... | +...+......+.. .|++++|+..++++.. ..-. .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11110 1 13344445555554 8999999999999987 3112 2345677
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCC
Q 012234 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 255 (468)
.+...+...|++++|...++.+.+.... ..++..+..++...|++++|...++++.+ .+..++..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987644 88888999999999999999999998775 355788999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 335 (468)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998863 335678888999999999999999999999864 23356788899999999999999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 336 KMP----VKPS----AKVWGALLYGASI---SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 336 ~~~----~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
++. ..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 872 2222 4488999999999 9999999999999999999999999999999999999999999999998
Q ss_pred hCC
Q 012234 405 ESG 407 (468)
Q Consensus 405 ~~~ 407 (468)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 754
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.4e-24 Score=211.30 Aligned_cols=392 Identities=11% Similarity=0.005 Sum_probs=306.5
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...|..+...+.+.|++++|++.|+++. ... |.+...|..+..++...|++++|.+.++++++.++. +..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAI-ELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 3567888999999999999999999998 432 457788999999999999999999999999998744 7888999999
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCHh---------------
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----------PGLS--------------- 140 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------~~~~--------------- 140 (468)
++...|++++|...|+.+ ..++......+..+...+...+|...++.+.. |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999999744 32222223333344444555666666666543 1111
Q ss_pred ---------------HHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHccCC
Q 012234 141 ---------------TWNAVISGLVQ--------NNRHEAVLDLVREMQASGVRPN--------AVTISSIFSLFSHFSN 189 (468)
Q Consensus 141 ---------------~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~~~ 189 (468)
....+...+.. .|++++|+.+++++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 22222222222 24789999999999875 344 2346667778889999
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
+++|...+..+.+.. |+...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4477888899999999999999999998764 45678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--------
Q 012234 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-------- 338 (468)
Q Consensus 267 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 338 (468)
.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++.
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8863 334678888999999999999999999999865 24456788899999999999999999998862
Q ss_pred CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 339 VKPSAKVWGALLYGASIS----------GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.......+..+...+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 112233455566777777 9999999999999999999999999999999999999999999999987553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=7.7e-24 Score=201.28 Aligned_cols=326 Identities=11% Similarity=0.022 Sum_probs=224.6
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 119 (468)
.+...+..+...+.+.|++++|..+|+.+++..+ .+..++..+..++...|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------------ 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3444555556666666666666666666655532 245555556666666666666666655543210
Q ss_pred hcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHH
Q 012234 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA----VTISSI------------FSL 183 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------~~~ 183 (468)
..+..++..+..+|.+.|++++|...|+++.+. .|+. ..+..+ ...
T Consensus 91 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 91 ----------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344555555555555555555555555543 2222 222222 334
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|+++.+ .++.+|..++.+|...|++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777777777654 44566677777778888888888888777653 45677888888888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHH------------HHHHhccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHh
Q 012234 261 SLFNEMLNNGIQPD-PVTFTAV------------LSACAHSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLS 322 (468)
Q Consensus 261 ~~~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~ 322 (468)
..|+++... .|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.
T Consensus 232 ~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 232 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHH
Confidence 888888764 333 3334333 78889999999999999999864 444 447888899999
Q ss_pred ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH------------HH
Q 012234 323 RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL------------YS 388 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~ 388 (468)
+.|++++|+..++++. .+.+..+|..+..+|...|++++|...++++.+..|.++.++..++.+ |.
T Consensus 307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~ 386 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH
Confidence 9999999999999873 344689999999999999999999999999999999999999988844 44
Q ss_pred HcC-----ChHHHHHHHHH
Q 012234 389 QAG-----RWDEADRVREQ 402 (468)
Q Consensus 389 ~~g-----~~~~A~~~~~~ 402 (468)
..| +.+++.+.+++
T Consensus 387 ~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 387 ILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GSCSSTTCCTTHHHHHHHH
T ss_pred HhCCCccCCHHHHHHHHHH
Confidence 445 55666777765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.5e-23 Score=199.34 Aligned_cols=365 Identities=10% Similarity=-0.011 Sum_probs=240.2
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
.++..|..+...+.+.|++++|+.+|+++. ... +.+..++..+..++...|++++|...++++++.++. +..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAV-DGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 345678999999999999999999999998 332 467888999999999999999999999999998744 68889999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCe------ehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKDE------VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (468)
..+|.+.|++++|...|+++.+.++ ..+..++..+.. ..+..+...+...|++++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999876433 455555443111 112222334444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (468)
|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554432 2334444455555555555555555555554432 23344455555555555555555555554432
Q ss_pred --C-CcchHH------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHH
Q 012234 238 --R-SLIIWT------------AIISAYAAHGDASKAVSLFNEMLNNGIQPD-----PVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 238 --~-~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
+ +...+. .++..+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 112222 2367778888888888888888774 343 34677777888888888888888
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHcC-----C
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYG------------ASISG-----D 358 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~------------~~~~g-----~ 358 (468)
++++.+. .+.+...+..+..+|...|++++|...++++ ...| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 8887753 1335677888888888888888888888877 3445 35555555532 33334 5
Q ss_pred hHHHHHHHHH-HHhhCCCCcc----------hHHHHHHHHHHcCChHHH
Q 012234 359 VELGKFVCDH-LFEIEPENTG----------NYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 359 ~~~a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A 396 (468)
.+++.+.+++ +.+..|++.. .+..+..+|...|+.+++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 6777888886 6666665422 455556666655555443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-23 Score=201.18 Aligned_cols=374 Identities=10% Similarity=-0.019 Sum_probs=297.1
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.||..+|..+..++.+.|++++|++.|+++. ... |.+...+..+..++...|++++|...|+.+.+.++. +......
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 112 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEP 112 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHH
Confidence 3788899999999999999999999999998 433 455678999999999999999999999999988753 3333334
Q ss_pred HHHHHHhCCCHHHHHHHH--------------------------------------hhcCC---------C-CeehHHHH
Q 012234 83 LIGMYAKCGSLDYARALL--------------------------------------DEMSD---------K-DEVSYSAI 114 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~--------------------------------------~~~~~---------~-~~~~~~~l 114 (468)
++..+........+.+.+ ..... | +...+...
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (514)
T 2gw1_A 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192 (514)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence 444333322222222211 11110 1 13344444
Q ss_pred HHHHHh---cCCHHHHHHHHhhCCC----------------C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 012234 115 ISGYMV---HGFVEKAMDLFQVMKR----------------P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174 (468)
Q Consensus 115 i~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 174 (468)
...+.. .|++++|...|+++.+ | +..++..+...+...|++++|+..++++.+.+ |+.
T Consensus 193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~ 270 (514)
T 2gw1_A 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRV 270 (514)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccH
Confidence 444554 8999999999988654 1 23478888999999999999999999998864 447
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHH
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYA 251 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 251 (468)
..+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ .+..++..+...+.
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 788899999999999999999999998875 45677888999999999999999999998754 35678889999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhc---c
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSR---A 324 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~ 324 (468)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999998753 335678888999999999999999999998764222222 3388899999999 9
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 325 RRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 325 ~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
|++++|...++++. .+.+..++..+...+...|++++|...++++.+..|.++..+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999873 344688899999999999999999999999999999988777655
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.1e-20 Score=171.72 Aligned_cols=319 Identities=10% Similarity=-0.003 Sum_probs=181.7
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHH
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGY 118 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 118 (468)
...+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|+++.+ | +...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345566666677777777777777777776533 566666677777777777777777665542 1 233444444444
Q ss_pred HhcCCHHHHHHHHhhCCC--C---C-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 012234 119 MVHGFVEKAMDLFQVMKR--P---G-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~--~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 192 (468)
...|++++|...|+++.+ | + ...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 444444444444444432 2 1 111111100000 0001111344555556666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+..++..+...+...|++++|...+++..+.
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666655555543 23444555556666666666666666665543 23345666666666666667776666666654
Q ss_pred CCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-H----hHHHHHHHHHhccCChHHHHH
Q 012234 270 GIQPDPVTFT------------AVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-V----EHYACMVGVLSRARRISEATE 332 (468)
Q Consensus 270 ~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~~~~~~A~~ 332 (468)
. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..+...+...|++++|..
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred C-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 2 11222221 2245566777777777777777654 232 2 223445666777777777777
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 333 FVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 333 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+++.. .+.+..++..+...+...|++++|...++++.+.+|+++..+..+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 777662 233566777777777777777777777777777777777766666666543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=5.4e-20 Score=168.98 Aligned_cols=303 Identities=14% Similarity=0.075 Sum_probs=214.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHH
Q 012234 77 LWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLV 150 (468)
Q Consensus 77 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 150 (468)
...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++.+ | +...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44555666666666777777766665543 2344555555555555555555555555432 2 3344555555555
Q ss_pred hCCChHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012234 151 QNNRHEAVLDLVREMQASGVRP---N-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 151 ~~g~~~~a~~~~~~m~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (468)
..|++++|...++++.+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 555555555555555543 22 1 111111111000 011223467889999999
Q ss_pred HHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 227 GAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 227 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
+|...++++.+ .++..+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998764 456788899999999999999999999998863 44678899999999999999999999999986
Q ss_pred hcCCCCCHhHHH------------HHHHHHhccCChHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHHcCChHHHHHH
Q 012234 304 QYGIQPSVEHYA------------CMVGVLSRARRISEATEFVSKMP-VKPS-A----KVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 304 ~~~~~p~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
.. +.+...+. .+...+.+.|++++|...++++. ..|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 42 22333332 23667889999999999999872 2333 3 3355678899999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998753
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.1e-20 Score=181.77 Aligned_cols=367 Identities=13% Similarity=0.033 Sum_probs=281.2
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
.++.+|..+..++.+.|++++|++.|+++. ... |.+..++..+..++...|++++|...|+ .....+.+. ...
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~ 129 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKAL-EIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GAS 129 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHH
Confidence 467889999999999999999999999998 433 4567788999999999999999999996 443322222 122
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC-------------------------------------Cee---hHHHHHHHHHh---
Q 012234 84 IGMYAKCGSLDYARALLDEMSDK-------------------------------------DEV---SYSAIISGYMV--- 120 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------~~~---~~~~li~~~~~--- 120 (468)
+..+...+....|...++++... +.. ....+...+..
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 33444445556666666666431 111 22222222222
Q ss_pred -----cCCHHHHHHHHhhCCC--CC--------HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012234 121 -----HGFVEKAMDLFQVMKR--PG--------LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185 (468)
Q Consensus 121 -----~~~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 185 (468)
.|++++|..+|+++.+ |+ ..++..+...+...|++++|+..++++... .|+...+..+...+.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 2478899999998876 33 235777778899999999999999999986 566788889999999
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
..|+++.|...+..+.+.. +.+..++..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999876 45677889999999999999999999998764 4567899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC----CHhHHHHHHHHHhcc----------CChH
Q 012234 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP----SVEHYACMVGVLSRA----------RRIS 328 (468)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------~~~~ 328 (468)
++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+ ....+..+...+.+. |+++
T Consensus 367 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 367 FNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 99998863 34567888899999999999999999999876421111 122244455677777 9999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 329 EATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 329 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
+|...|+++. .+.+...+..+...+...|++++|...++++.+..|.++....
T Consensus 446 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999873 3446889999999999999999999999999999998766543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=3.3e-18 Score=164.12 Aligned_cols=349 Identities=10% Similarity=-0.013 Sum_probs=161.2
Q ss_pred CcchHHHHHHHhhc----cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-CeehH
Q 012234 41 DGVTVVSVLQACGQ----SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK----CGSLDYARALLDEMSDK-DEVSY 111 (468)
Q Consensus 41 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~ 111 (468)
+...+..+...+.. .++++.|..+|++..+.| +...+..|...|.. .++.++|...|++..+. ++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33444444444433 455555555555554433 33344444445544 45555555555544332 33444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 112 SAIISGYMV----HGFVEKAMDLFQVMKR-PGLSTWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIFS 182 (468)
Q Consensus 112 ~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 182 (468)
..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 444444444 4455555555554432 233344444444444 445555555555554432 3334444444
Q ss_pred HHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhhccC-CCcchHHHHHHHHHH-
Q 012234 183 LFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK----TGFLHGAQRVFDRFKG-RSLIIWTAIISAYAA- 252 (468)
Q Consensus 183 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~- 252 (468)
.|.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|++..+ .++.++..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 4444 455555555555554433 23334444444443 4455555555554433 223344444444444
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc
Q 012234 253 ---HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324 (468)
Q Consensus 253 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (468)
.+++++|+.+|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+...|...
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhC
Confidence 455555555555544432 223333344444433 4555555555554432 1223344444444433
Q ss_pred C---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCCh
Q 012234 325 R---RISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRW 393 (468)
Q Consensus 325 ~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 393 (468)
| ++++|+++|++.....++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|.+ .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 3 445555555544222344445555555544 455555555555554432 34445555555554 4555
Q ss_pred HHHHHHHHHHHhCC
Q 012234 394 DEADRVREQMKESG 407 (468)
Q Consensus 394 ~~A~~~~~~m~~~~ 407 (468)
++|...|++..+.+
T Consensus 420 ~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555554444
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3.3e-20 Score=171.26 Aligned_cols=293 Identities=13% Similarity=0.015 Sum_probs=184.9
Q ss_pred CCCHHHHHH-HHhhcCCC-------CeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHH
Q 012234 90 CGSLDYARA-LLDEMSDK-------DEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 90 ~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 158 (468)
.|++++|.. .|++...- +...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 55543321 233455555555555555555555555432 2333455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
+..++++.+.+ +.+..++..+..++...|++++|...++.+.+..... ...+..+... .. ...
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-------~~-------~~~- 180 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-------AG-------GAG- 180 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-------hh-------hhc-
Confidence 55555554432 2234444555555555555555555555554433111 1111000000 00 000
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 317 (468)
....+..+... ...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 181 ~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l 257 (368)
T 1fch_A 181 LGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKL 257 (368)
T ss_dssp -----CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 00011122333 3889999999999999875322 14788889999999999999999999998864 23457889999
Q ss_pred HHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----------cchHHHHH
Q 012234 318 VGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-----------TGNYIIMA 384 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~ 384 (468)
...+...|++++|+..|+++. .+.+..++..+...+...|++++|...++++.+..|.+ ..+|..++
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 999999999999999999873 34468899999999999999999999999999998877 78999999
Q ss_pred HHHHHcCChHHHHHHHHH
Q 012234 385 NLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~ 402 (468)
.+|...|++++|..++++
T Consensus 338 ~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 338 LALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHTCGGGHHHHHTT
T ss_pred HHHHHhCChHhHHHhHHH
Confidence 999999999999998764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.3e-19 Score=162.79 Aligned_cols=249 Identities=13% Similarity=0.081 Sum_probs=151.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
+..++.++...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3334444444455555555555544431 223334444444445555 4555555555544433 223344455555555
Q ss_pred hcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
..|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 55555555555555432 233455556666777777777777777766642 33456667777777777777777777
Q ss_pred HHHhhhhcC-------CCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 298 FNAMSGQYG-------IQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 298 ~~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
++++.+... .+.....+..+...|...|++++|...+++.. .+.+...+..+...+...|++++|...+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 777664311 12335677777778888888888888877762 233567778888888888888888888888
Q ss_pred HHhhCCCCcchHHHHHHHHH-HcCCh
Q 012234 369 LFEIEPENTGNYIIMANLYS-QAGRW 393 (468)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~-~~g~~ 393 (468)
+.+..|+++..+..++.++. ..|+.
T Consensus 296 al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888888888888888773 44543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.3e-17 Score=160.02 Aligned_cols=351 Identities=9% Similarity=-0.036 Sum_probs=295.3
Q ss_pred CcchHHHHHHHHhc----CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHHHHhCCCCc
Q 012234 5 DIVSWNSMIAGYSQ----GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ----SSDIVFGMEVHNFVIESHIKMD 76 (468)
Q Consensus 5 ~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 76 (468)
|+.++..|...|.. .+++++|+..|+... +. .+...+..+...+.. .++.++|..+|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA-EQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 56677778888887 899999999999998 43 356677788888877 899999999999998876 5
Q ss_pred hHHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-CeehHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHH
Q 012234 77 LWICNALIGMYAK----CGSLDYARALLDEMSDK-DEVSYSAIISGYMV----HGFVEKAMDLFQVMKR-PGLSTWNAVI 146 (468)
Q Consensus 77 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~ 146 (468)
...+..|..+|.. .+++++|...|++..+. ++.++..|...|.. .++.++|...|++..+ .+...+..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6677788888988 88999999999987664 66788888888887 8899999999998764 5677888899
Q ss_pred HHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012234 147 SGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218 (468)
Q Consensus 147 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (468)
..|.. .+++++|+.+|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+..+
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 99988 899999999999998865 55677777777775 789999999999998865 45566778888
Q ss_pred HHh----cCChHHHHHHHhhccC-CCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 219 YAK----TGFLHGAQRVFDRFKG-RSLIIWTAIISAYAAH-----GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 219 ~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
|.. .+++++|..+|++..+ .++.++..+...|... +++++|...|++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 887 8999999999999876 4567788888888887 89999999999999875 455667777777765
Q ss_pred C---CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012234 289 G---LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SG 357 (468)
Q Consensus 289 ~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 357 (468)
| +.++|...|++..+. .++..+..|...|.. .+++++|.++|++.....++..+..|...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 889999999999864 467788888888888 89999999999988544578889999999988 89
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 012234 358 DVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~ 375 (468)
+.++|...|+++.+.+|+
T Consensus 418 d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCC
Confidence 999999999999999875
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.1e-19 Score=160.48 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=228.8
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHH
Q 012234 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (468)
.+...+..++..+...|++++|+.+++++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455667788888999999999999999998764 4455566778888999999999999999999875 45677888899
Q ss_pred HHHHhcC-ChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 012234 217 DTYAKTG-FLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292 (468)
Q Consensus 217 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 292 (468)
..+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998775 345689999999999999999999999998863 334566777899999999999
Q ss_pred HHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHcCChHH
Q 012234 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-----------VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 293 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
+|...++++.+. .+.+...+..+...+...|++++|...++++. .+....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 24467889999999999999999999998772 13346789999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999887653
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2.1e-17 Score=160.10 Aligned_cols=391 Identities=9% Similarity=0.053 Sum_probs=288.0
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
|..+|..++. +.+.|++++|..+|+++. .. .|.+...|...+..+.+.|+++.|..+|+++++.. |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al-~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLV-AQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHH-TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 5678999998 478899999999999998 43 35567789999999999999999999999999875 4677777776
Q ss_pred HHH-HhCCCHHHHHH----HHhhcCC------CCeehHHHHHHHHHh---------cCCHHHHHHHHhhCCC-CCH---h
Q 012234 85 GMY-AKCGSLDYARA----LLDEMSD------KDEVSYSAIISGYMV---------HGFVEKAMDLFQVMKR-PGL---S 140 (468)
Q Consensus 85 ~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~-~~~---~ 140 (468)
... ...|+.+.|.+ +|++... ++...|...+....+ .|++++|..+|++..+ |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677776655 6665421 345677777776654 6889999999999875 332 2
Q ss_pred HHHHHHHHH-------------HhCCChHHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHHc----
Q 012234 141 TWNAVISGL-------------VQNNRHEAVLDLVREMQ------ASG---VRPNA--------VTISSIFSLFSH---- 186 (468)
Q Consensus 141 ~~~~l~~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~p~~--------~~~~~l~~~~~~---- 186 (468)
.|....... ...+++..|..++.... +.. ++|+. ..|...+.....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333322211 12356777777776632 221 34442 233333322222
Q ss_pred cCCh----hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHHhhccC---C-CcchHH
Q 012234 187 FSNL----KGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-------TGFLH-------GAQRVFDRFKG---R-SLIIWT 244 (468)
Q Consensus 187 ~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~ 244 (468)
.++. ..+..+|+.++... +.+..++..++..+.+ .|+++ +|..+|++..+ | +...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 1232 36778888888864 5567788888888775 69987 89999998774 2 456888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHH-
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPD-P-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGV- 320 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~- 320 (468)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+. .| +...|......
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHH
Confidence 9999999999999999999999985 454 2 57888888888999999999999999853 34 33333332222
Q ss_pred HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc----hHHHHHHHHHHcCChH
Q 012234 321 LSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG----NYIIMANLYSQAGRWD 394 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 394 (468)
+...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|+++....|.++. .|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34689999999999977 2334 6889999999999999999999999999998776655 7778888888899999
Q ss_pred HHHHHHHHHHhC
Q 012234 395 EADRVREQMKES 406 (468)
Q Consensus 395 ~A~~~~~~m~~~ 406 (468)
.+..+.+++.+.
T Consensus 481 ~~~~~~~r~~~~ 492 (530)
T 2ooe_A 481 SILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-18 Score=163.88 Aligned_cols=366 Identities=11% Similarity=0.000 Sum_probs=237.9
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHh-----C---CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-----
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-----H---IKMDLWICNALIGMYAKCGSLDYARALLDEMSD----- 105 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 105 (468)
+.....|+.+...+...|+.++|++.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567888888999999999999999987653 1 122356788899999999999999988876542
Q ss_pred --C----CeehHHHHHHHHHhc--CCHHHHHHHHhhCCC--CC-HhHHHHHHHH---HHhCCChHHHHHHHHHHHHCCCC
Q 012234 106 --K----DEVSYSAIISGYMVH--GFVEKAMDLFQVMKR--PG-LSTWNAVISG---LVQNNRHEAVLDLVREMQASGVR 171 (468)
Q Consensus 106 --~----~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~--~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~ 171 (468)
+ ...++..+..++... +++++|+..|++..+ |+ ...+..+..+ +...++.++|++.+++.++.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 234566665555544 468999999988764 43 4444444443 455688888999998887753 3
Q ss_pred CCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHH
Q 012234 172 PNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWT 244 (468)
Q Consensus 172 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 244 (468)
.+...+..+...+.. .++.+.|...++...... +.+..++..+...|...|++++|...|++..+ .+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 345555555544443 467788999998888765 45667788899999999999999999988765 2345566
Q ss_pred HHHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc
Q 012234 245 AIISAYAAH-------------------GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305 (468)
Q Consensus 245 ~l~~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (468)
.+..+|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 665554322 33567788888777642 234456777888999999999999999998854
Q ss_pred CCCCCH--hHHHHHHH-HHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 306 GIQPSV--EHYACMVG-VLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 306 ~~~p~~--~~~~~l~~-~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
...|.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+..++++..+.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 222211 12233332 235778999999999876 35665433222 234556778888889999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
.|+.+|...|++++|++.|++.++.+-......+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999998776544445553
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=3.8e-19 Score=163.95 Aligned_cols=258 Identities=11% Similarity=-0.003 Sum_probs=177.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2344455555555555555555555555555543 233445555555555
Q ss_pred hcCChHHHHHHHhhccCCC-------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh
Q 012234 221 KTGFLHGAQRVFDRFKGRS-------------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACA 286 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~ 286 (468)
..|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 6666666666555544311 123345577888899999999999999886322 15788889999999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
..|++++|...|+++.+. .+.+..++..+...|...|++++|+..|+++. ..| +..++..+..+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999864 24467889999999999999999999999873 334 58899999999999999999999
Q ss_pred HHHHHHhhCCC------------CcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 365 VCDHLFEIEPE------------NTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 365 ~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.++++.+..|. +..++..++.++...|+.+.+.++.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998765 367899999999999999998887654
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=8.7e-19 Score=158.80 Aligned_cols=345 Identities=11% Similarity=0.005 Sum_probs=149.6
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 18 QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
+.|+.++|.+.++++. . | .+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-~----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-E----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-C----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4577888888888774 2 3 48888888888888888888888542 46678888888888888888888
Q ss_pred HHHhhcCC--CCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 012234 98 ALLDEMSD--KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175 (468)
Q Consensus 98 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 175 (468)
.+++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 87776654 3556788888888888888888877753 77778888888888888888888888866 2
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCC
Q 012234 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (468)
.|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 5788888888888888888888877 257788888888888888888877766654 444445567888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC------CHhHHHHHHHHHhccCChHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP------SVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~ 329 (468)
+++|..+++...... +.....|+.+...|++- ++++..+.++...++-+++| +...|..++..|...++++.
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999998888876543 33455666666666553 33333333333333324444 45678888888888899988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
|....-+-+ |+..-.........+..+.+--.+...-.++.. |..++.|..++...=+...+.++++
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHH
Confidence 887665542 222222222233334444433333322222222 2345555555544444444444443
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=3e-17 Score=145.47 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=204.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCH----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 012234 116 SGYMVHGFVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 191 (468)
+-....|++..|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 334556777777777766554322 2345566778888888888776543 1 3556667777777778888888
Q ss_pred hHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 192 GGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
+|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+..++..++..+.+.|++++|...|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 8888888877766433 455666777889999999999999998 566778889999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHH
Q 012234 271 IQPDPVTF---TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV-KPSAKV 345 (468)
Q Consensus 271 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~ 345 (468)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ .. +.++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3553211 22334455669999999999999975 3567888999999999999999999999987 33 446889
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 346 WGALLYGASISGDVEL-GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
+..++..+...|+.++ +.++++++.+.+|+++.+. +...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999999976 6789999999999987543 4566666676665543
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.2e-19 Score=164.44 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=82.6
Q ss_pred hCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 89 KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344555555555555332 35555555555555555555555432 34445555555555555555555544444432
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHH
Q 012234 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248 (468)
Q Consensus 169 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 248 (468)
.+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|++++|..+|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3334445555555555555555555443 244445555555555555555555555544 24555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (468)
++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHH
Confidence 555555555555555554 145555555555555555555533332211 12222334555555555555
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCC-----CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 329 EATEFVSKM-PV-KPSAKVWGALLYGASIS--GDVELGKFVCDHLFEIEP-----ENTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 329 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
+|..+++.. +. +-....|+-|..++++- ++..+.++.|..-....| .+...|..+.-.|.+-++++.|...
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555555544 21 12244444444444332 223333333332222223 3455566666666666666655553
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3e-18 Score=158.01 Aligned_cols=295 Identities=11% Similarity=-0.011 Sum_probs=185.8
Q ss_pred HhhccCChHHHHH-HHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCC
Q 012234 51 ACGQSSDIVFGME-VHNFVIESHIK---MDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 51 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 123 (468)
++...|+++.|.. .+++..+..+. .+...+..+...+...|++++|...|+++.+ .+..+|..+...+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4556788999988 87766554321 1345677899999999999999999998864 356789999999999999
Q ss_pred HHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHH
Q 012234 124 VEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGKEIHGY 199 (468)
Q Consensus 124 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 199 (468)
+++|...|+++.+ .+..++..+...+...|++++|+..++++.... |+.. .+..+.. ...
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-------~~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEE-------GAG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH-------Hhh-------
Confidence 9999999998764 467789999999999999999999999999864 3322 2211100 000
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012234 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--R---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 274 (468)
...+ ......+...+ ..|++++|...|+++.+ | +..++..+...+...|++++|...++++.... +.+
T Consensus 178 ----~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 ----GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0000 00011122222 55566666666655543 2 24456666666666777777777776666542 234
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC------------C
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK------------P 341 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~------------~ 341 (468)
...+..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|...|+++. .. .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 556666677777777777777777776643 12345666667777777777777777776651 11 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
...+|..+..++...|+.++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 25677778888888888888777766443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=6e-17 Score=156.94 Aligned_cols=364 Identities=10% Similarity=0.025 Sum_probs=264.8
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCeehHHHHHH
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIIS 116 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 116 (468)
|-+...|..++.. .+.|+++.|..+|+.+++..+ .+...|..++..+.+.|++++|..+|++... |+...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3467788888884 778999999999999998753 4788899999999999999999999999886 56566766664
Q ss_pred HH-HhcCCHHHHHH----HHhhCC-----C-CCHhHHHHHHHHHHh---------CCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 117 GY-MVHGFVEKAMD----LFQVMK-----R-PGLSTWNAVISGLVQ---------NNRHEAVLDLVREMQASGVRPNAVT 176 (468)
Q Consensus 117 ~~-~~~~~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~ 176 (468)
.. ...|+.++|.+ +|+... . ++...|...+..... .|++++|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 35677777665 666542 1 345678887776655 6889999999999987311111223
Q ss_pred HHHHHHHH-------------HccCChhhHHHHHHHHH------HcC---CCCc--------hhHHHHHHHHHHhc----
Q 012234 177 ISSIFSLF-------------SHFSNLKGGKEIHGYAV------KNR---YDRN--------IYVATAIIDTYAKT---- 222 (468)
Q Consensus 177 ~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~---- 222 (468)
|....... ...+++..|..++.... +.. ++|+ ...+...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 32222111 12345667777766532 111 2333 13444444332221
Q ss_pred CCh----HHHHHHHhhccC---CCcchHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHH
Q 012234 223 GFL----HGAQRVFDRFKG---RSLIIWTAIISAYAA-------HGDAS-------KAVSLFNEMLNNGIQPDPVTFTAV 281 (468)
Q Consensus 223 g~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~l 281 (468)
++. +.+..+|++... .++..|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 222 367778887664 456788888888775 69987 899999998863223357788889
Q ss_pred HHHHhccCCHHHHHHHHHHhhhhcCCCCC-H-hHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHH-HHHc
Q 012234 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPS-V-EHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYG-ASIS 356 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~-~~~~ 356 (468)
+..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++.. ..|. ...|...+.. +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 99999999999999999999853 554 2 578888999999999999999999873 3332 3333333333 3468
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998874
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=4.5e-18 Score=154.01 Aligned_cols=271 Identities=9% Similarity=-0.011 Sum_probs=177.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 110 SYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 110 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344445555555555555555554432 233344455555555555555555555554432 2233444444444555
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHH-HH-HHHHcCChHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI-IS-AYAAHGDASKAVSLFN 264 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a~~~~~ 264 (468)
.|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++++|...++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 55555555555444443211 111111110000 000000111 22 3667788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCC
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPS 342 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~ 342 (468)
++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++. .+.+
T Consensus 163 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 163 AALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 988763 346788888999999999999999999998864 23457788899999999999999999998872 3446
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------------CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE------------NTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
..++..+...+...|++++|...++++.+..|. ++.++..++.+|.+.|++++|..++++.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 889999999999999999999999999999988 6889999999999999999999987654
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=8e-16 Score=155.32 Aligned_cols=348 Identities=14% Similarity=0.093 Sum_probs=268.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCC--CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
...+++|...|.+.+|++++++.. ..+- .-+...-+.++....+. +..+..+..+..-.. + ...+...+
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 456788889999999999999987 3321 11223344566555555 555555555544311 1 34477788
Q ss_pred HhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 88 AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
...|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|+..|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 889999999999998742 111222222 27788999999999774 4678889999999999999999999663
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHH
Q 012234 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247 (468)
Q Consensus 168 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 247 (468)
.|...|..++.+|.+.|++++|.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 466788889999999999999999999888765 33334446999999999988655443 455667788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCCh
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 327 (468)
..|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..+..+|...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999884 378889999999999999999998763 457899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc--CChHHHHHHHH
Q 012234 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA--GRWDEADRVRE 401 (468)
Q Consensus 328 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 401 (468)
..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|++- ++..++.++|.
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999887764 445666778999999999999999999999999999999998888888875 45556666554
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3e-18 Score=157.97 Aligned_cols=259 Identities=13% Similarity=-0.024 Sum_probs=190.8
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHH
Q 012234 41 DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISG 117 (468)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 117 (468)
+...+..+...+.+.|++++|...|+++++..+. +..++..+..+|...|++++|+..|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4555777777777788888888888888777633 667777788888888888888888877653 346677777788
Q ss_pred HHhcCCHHHHHHHHhhCCC--CC-----------HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 012234 118 YMVHGFVEKAMDLFQVMKR--PG-----------LSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIFSL 183 (468)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~ 183 (468)
|...|++++|+..|+++.+ |+ ...+..+...+...|++++|+..++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888888888877654 11 123344577888889999999999998876321 157788888888
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
+...|++++|...++.+.+.. +.+..++..+..+|...|++++|+..|++..+ .+..++..+..+|...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999888875 45677888899999999999999999988764 34678888899999999999999
Q ss_pred HHHHHHHHCCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 012234 261 SLFNEMLNNGIQ-----------PDPVTFTAVLSACAHSGLVDKAWDIFNAM 301 (468)
Q Consensus 261 ~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (468)
..|+++.+.... .+...+..+..++...|+.+.+..+..+-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999988763211 12567888889999999999888877654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2.1e-17 Score=146.48 Aligned_cols=247 Identities=11% Similarity=0.079 Sum_probs=204.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNA--VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (468)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999876543 4443 3556678999999999999986644 23567778888999999999
Q ss_pred ChHHHHHHHhhccC----C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 224 FLHGAQRVFDRFKG----R-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 224 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
+.++|++.++++.. | ++..+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 455677788999999999999999987 457788889999999999999999999
Q ss_pred HHhhhhcCCCCCHhHH---HHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 299 NAMSGQYGIQPSVEHY---ACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 4653211 223345556699999999999983 45678999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Q 012234 374 PENTGNYIIMANLYSQAGRWDE-ADRVREQMKESG 407 (468)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 407 (468)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578999887754
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=9.2e-17 Score=153.41 Aligned_cols=365 Identities=11% Similarity=-0.029 Sum_probs=240.1
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhC-------CCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCC-----
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNS-------PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI----- 73 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 73 (468)
...||.|...+...|++++|++.|++..+- ..-+....+|..+..++...|++++|...++++.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456999999999999999999999887521 11123356788999999999999999999998876421
Q ss_pred -C-CchHHHHHHHHHHHhC--CCHHHHHHHHhhcCC--C-CeehHHHHHHH---HHhcCCHHHHHHHHhhCCC---CCHh
Q 012234 74 -K-MDLWICNALIGMYAKC--GSLDYARALLDEMSD--K-DEVSYSAIISG---YMVHGFVEKAMDLFQVMKR---PGLS 140 (468)
Q Consensus 74 -~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~---~~~~ 140 (468)
. ....++..+..++... +++++|+..|++..+ | ++..+..+..+ +...++.++|++.|++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 1 1345666666666554 579999999998764 4 45556555554 3456778888888887653 3455
Q ss_pred HHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHH
Q 012234 141 TWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216 (468)
Q Consensus 141 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (468)
++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 66666555544 467889999999988764 5566788889999999999999999999999875 44556666666
Q ss_pred HHHHhc-------------------CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012234 217 DTYAKT-------------------GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274 (468)
Q Consensus 217 ~~~~~~-------------------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 274 (468)
.+|... +.++.|...|++..+ .+..++..+...+...|++++|+..|++..+....|.
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 665432 235667777776543 4567899999999999999999999999988654433
Q ss_pred HH--HHHHHHH-HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHH
Q 012234 275 PV--TFTAVLS-ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGAL 349 (468)
Q Consensus 275 ~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l 349 (468)
.. .+..+.. .....|+.++|+..|++..+ +.|+........ ..+.+++++. . .+.+..+|..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22 2222322 24577999999999999884 356543332222 2233333332 1 24467899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999988887766554
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.5e-17 Score=149.04 Aligned_cols=275 Identities=11% Similarity=-0.059 Sum_probs=177.9
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
+...|..+...+...|++++|+.+|+++.+. . +.+...+..+...+...|++++|...++++.+..+ .+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-A-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 4556677777888888888888888887732 2 34566777777778888888888888888877753 3666777778
Q ss_pred HHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHH--HHHhCCChHHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS--GLVQNNRHEAVL 159 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~ 159 (468)
.++...|++++|...|+++.+. +...+..+.... ++......+.. .+...|++++|.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 8888888888888887766532 122222220000 00111111112 245556666677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-- 237 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 237 (468)
..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666543 3345566666666667777777777776666654 33455666677777777777777777776543
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-----------DPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+..++..+...+...|++++|...++++....... +...+..+..++...|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345667777888888888888888888877642221 35677788888888888888888887654
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6.8e-15 Score=148.69 Aligned_cols=287 Identities=13% Similarity=0.113 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCC
Q 012234 77 LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNR 154 (468)
Q Consensus 77 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 154 (468)
..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|.+.++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 344445555555555555555555432 3444455555555555555555555544332 222222234455555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
+++...+. . .++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44322221 1 233344444555555555555555555543 2445555555555555555555554
Q ss_pred ccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhH
Q 012234 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEH 313 (468)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 313 (468)
. .+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++... ++.+ ....
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gm 1316 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGM 1316 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHH
Confidence 4 3335555555555555555555544332 22345556677788888888888888887776 4444 3445
Q ss_pred HHHHHHHHhcc--CChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------
Q 012234 314 YACMVGVLSRA--RRISEATEFVSKM-PVKP------SAKVWGALLYGASISGDVELGKFVCDHLFEI------------ 372 (468)
Q Consensus 314 ~~~l~~~~~~~--~~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------ 372 (468)
|+-|..+|.+. ++..++.++|..- .++| +...|..++..|.+.|+++.|....-+-...
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 66666666543 4555666655433 3333 4677888888899999998887332221111
Q ss_pred CCCCcchHHHHHHHHHHcC
Q 012234 373 EPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g 391 (468)
.+.|+..|...+..|...+
T Consensus 1397 kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccccHHHHHHHHHHHHhhC
Confidence 4567777777777777666
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-15 Score=132.22 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--chhHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIID 217 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 217 (468)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+..... +..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 355666666666677777777776666654 555566666666666666666666665555422100 000
Q ss_pred HHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
....++..+...+...|++++|...|+++... .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00245666677777778888888888777764 3443 235556778888888
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
++++... .+.+...+..+...+...|++++|...++++. .+.+..++..+...+...|++++|+..++++.+..|+
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 8887752 12245677788888888888999888888772 3446788888999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.++..++.+|.+.|++++|...+++..+..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998887643
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7e-16 Score=134.41 Aligned_cols=235 Identities=9% Similarity=0.018 Sum_probs=168.2
Q ss_pred eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 012234 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPN----AVTISS 179 (468)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 179 (468)
...|..+...+...|++++|+..|++..+ .+...+..+..++...|++++|+..+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34678889999999999999999988653 667789999999999999999999999988742 1122 466777
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (468)
+..++...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 7777778888888888877777643 221 223444556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-
Q 012234 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP- 338 (468)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 338 (468)
...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|...+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666665541 223445666666777777777777777777653 13345667777777777777777777777662
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHHH
Q 012234 339 -VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMAN 385 (468)
Q Consensus 339 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 385 (468)
.+.+...|..+...+...|++++|...++++.+.. |.+..++..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 23357778888888888888888888888888887 766666655544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1.2e-15 Score=129.24 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=151.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
+++...+..+...+.+.|++++|...|++..+. ++..+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666777788888888888888888877653 44677888888888999999999998888753 33567778888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHH
Q 012234 283 SACAHS-----------GLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGAL 349 (468)
Q Consensus 283 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l 349 (468)
.++... |++++|...+++..+. .| +...+..+...+...|++++|+..|++.. ...+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999864 45 57788889999999999999999999872 12788999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
..++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=7.6e-16 Score=145.49 Aligned_cols=378 Identities=9% Similarity=-0.016 Sum_probs=246.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCCh---HHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI---VFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
.+...+.+.|++++|+++|++.. +.+ +...+..+...+...|+. ++|..+|++..+. +...+..+..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa-~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLA-ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 35677788899999999999987 433 344455555666667777 8999999988764 444556666655
Q ss_pred HhCC-----CHHHHHHHHhhcCCC-CeehHHHHHHHHHhcCCHHH---HHHHHhhCCC-CCHhHHHHHHHHHHhCCChHH
Q 012234 88 AKCG-----SLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEK---AMDLFQVMKR-PGLSTWNAVISGLVQNNRHEA 157 (468)
Q Consensus 88 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 157 (468)
...| +.++|...|++..++ ++..+..|...|...+..++ +.+.+..... .+...+..|...|...+.+++
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 5555 788999999987764 56688888888887665444 4444443332 456677788888888886655
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CChHHHHH
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFS---NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT----GFLHGAQR 230 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~ 230 (468)
+......+...-...+...+..+...|...| +.++|...|+...+.| +++...+..|..+|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 5554333322211223337778888888899 8999999999999887 44555546677777665 78999999
Q ss_pred HHhhccCCCcchHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhh
Q 012234 231 VFDRFKGRSLIIWTAIISA-Y--AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG-----LVDKAWDIFNAMS 302 (468)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 302 (468)
+|++....++..+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|...|++..
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9998874455677777776 4 46889999999999998876 5666666776666 55 8999999998876
Q ss_pred hhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 012234 303 GQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 374 (468)
..++..+..|...|.. ..++++|..+|++.....+......|...|.. ..+.++|...++++.+.++
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2356677777777766 44899999999987534455566667776664 4588999999999988875
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 375 ENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+........+......++..+|.++.++..+.
T Consensus 390 ~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 44332222222223344677787777776553
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=161.46 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=109.8
Q ss_pred ehHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 109 VSYSAIISGYMVHGFVEKAMDLFQVMK-------RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 109 ~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
.+|++||++|++.|++++|.++|..|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 479999999999999999999997753 4999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 182 SLFSHFSNL-KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 182 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999998776665444333333
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=160.75 Aligned_cols=150 Identities=8% Similarity=0.035 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQA---SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (468)
.+||+||.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5899999999999999999999988764 4789999999999999999999999999999999999999988888777
Q ss_pred HHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012234 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
.++++.|+ ..++|.++|++|.+.|+.||..+|++++..+.+ +.+++
T Consensus 208 ~glcK~G~------------------------------~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~ 253 (1134)
T 3spa_A 208 QCMGRQDQ------------------------------DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLK 253 (1134)
T ss_dssp HHHHHHTC------------------------------CHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHH
T ss_pred HHHHhCCC------------------------------cHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHH
Confidence 66655443 246788999999999999999999988865544 34555
Q ss_pred HHHHhhhhcCCCCC------HhHHHHHHHHHhccC
Q 012234 297 IFNAMSGQYGIQPS------VEHYACMVGVLSRAR 325 (468)
Q Consensus 297 ~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~ 325 (468)
.++++.. ++.|+ ..+...|.+.|.+.+
T Consensus 254 ~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 254 AVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 5555543 44443 444555667776655
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=4.3e-15 Score=140.37 Aligned_cols=344 Identities=10% Similarity=-0.043 Sum_probs=239.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH---HHHHHHHhhcCCCCeehHHHHHHHHHhcC--
Q 012234 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL---DYARALLDEMSDKDEVSYSAIISGYMVHG-- 122 (468)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 122 (468)
+...+.+.|++++|.++|++..+.| +...+..+..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 5566778899999999999998887 333445566777778888 99999999988778888888888666655
Q ss_pred ---CHHHHHHHHhhCCCC-CHhHHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 012234 123 ---FVEKAMDLFQVMKRP-GLSTWNAVISGLVQNNRHE---AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195 (468)
Q Consensus 123 ---~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 195 (468)
++++|...|++..++ +...+..|...|...+..+ ++.+.+......| +......+...|...+.++++..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 788999999987653 3447777888888776544 4555555555444 34456667777888887666665
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhhccCCCc-c--hHHHHHHHHHHc----CChHHHHHHHHH
Q 012234 196 IHGYAVKNRYDRNIYVATAIIDTYAKTG---FLHGAQRVFDRFKGRSL-I--IWTAIISAYAAH----GDASKAVSLFNE 265 (468)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~-~--~~~~l~~~~~~~----g~~~~a~~~~~~ 265 (468)
....+.+.-...++..+..|..+|...| +.++|+..|++..+.+. . .+..+...|... +++++|+.+|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 5444444333444558888999999999 99999999998765433 2 336677777554 799999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC-----ChHHHHHHHHhC
Q 012234 266 MLNNGIQPDPVTFTAVLSA-C--AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR-----RISEATEFVSKM 337 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~ 337 (468)
.. .| +...+..+... + ...+++++|...|++..+. | +...+..|...|. .| ++++|.++|++.
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 87 33 44455555555 3 5689999999999998864 3 6667777887777 55 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCCC
Q 012234 338 PVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 338 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 409 (468)
. ..++..+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 8 7788888888887776 349999999999988754 56788899999985 45899999999999988863
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=6.4e-15 Score=129.67 Aligned_cols=240 Identities=11% Similarity=-0.055 Sum_probs=173.5
Q ss_pred CCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHH
Q 012234 152 NNRHEAVLDLVREMQASGV---RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 228 (468)
.|++++|+..++++.+... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4667777777777766421 1134456666677777777777777777777654 34566677777777888888888
Q ss_pred HHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc
Q 012234 229 QRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305 (468)
Q Consensus 229 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (468)
...|++..+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888777654 34567888888899999999999999998875 344444444555556779999999999887764
Q ss_pred CCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.+++...+ .++..+...++.++|...+.+.. ..|+ ..++..+...+...|++++|...++++.+.+|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23444444 36777788888899999988763 2222 5788889999999999999999999999999877544
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~ 400 (468)
+ +.++...|++++|++-+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 66788889999988766
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=6e-15 Score=129.69 Aligned_cols=243 Identities=11% Similarity=0.021 Sum_probs=125.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhc
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN--IYVATAIIDTYAKT 222 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 222 (468)
....+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444445555555555555554432 11222444444455555555555555555544221111 11244455555555
Q ss_pred CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 223 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
|++++|+..|++..+ .+..++..+...|...|++++|...+++..+. .+.+...+..+...+...+++++|...|+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554432 23345555555555566666666655555443 12233444444412223346666666666
Q ss_pred HhhhhcCCCCCHhHHHHHHHHHhccCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHHcCChHHHHHHH
Q 012234 300 AMSGQYGIQPSVEHYACMVGVLSRARR---ISEATEFVSKMP----VKPS------AKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 300 ~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
++.+. .+.+...+..+...+...|+ +++|...+++.. ..|+ ..+|..+...+...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66543 12234455555555555555 545555554441 1122 246777788888889999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+++.+.+|+++.+...+.......+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999988887777766655443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.5e-13 Score=120.82 Aligned_cols=225 Identities=8% Similarity=-0.036 Sum_probs=133.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHH
Q 012234 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVAT 213 (468)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 213 (468)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~- 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC- 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH-
Confidence 4455666666777777777777777776662 233455555555555 666666666666655543 33344
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA----HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 287 (468)
..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 78 ------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 78 ------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp ------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 444444444 555555555555555543 44455555555555
Q ss_pred --cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012234 288 --SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SG 357 (468)
Q Consensus 288 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 357 (468)
.+++++|...|++..+. + +...+..+...|.. .+++++|+.+|++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665542 2 33445555555555 56666666666655322345566666666666 67
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGL 408 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 408 (468)
++++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777777766654 4566677777777 7777777777777766553
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=4e-14 Score=129.66 Aligned_cols=245 Identities=10% Similarity=0.061 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDT 218 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (468)
..|+.+...+.+.|++++|+..+++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..++..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467777788888888888888888888753 3355677778888888886 888888888888876 4466778888888
Q ss_pred HHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHH
Q 012234 219 YAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKA 294 (468)
Q Consensus 219 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a 294 (468)
+...|++++|+..|+++.+ .+..+|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888888764 455788888888999999999999999988863 2357788888888888 5554666
Q ss_pred -----HHHHHHhhhhcCCCC-CHhHHHHHHHHHhccC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC--------
Q 012234 295 -----WDIFNAMSGQYGIQP-SVEHYACMVGVLSRAR--RISEATEFVSKMPVKP-SAKVWGALLYGASISG-------- 357 (468)
Q Consensus 295 -----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g-------- 357 (468)
+..+++.... .| +...|..+...+...| ++++|++.+.++...| +...+..++..+...|
T Consensus 255 ~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4778887753 44 5678888888888887 6889998888775444 5678888888888764
Q ss_pred C-hHHHHHHHHHH-HhhCCCCcchHHHHHHHHHHc
Q 012234 358 D-VELGKFVCDHL-FEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 358 ~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 390 (468)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888888776543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=2.4e-13 Score=119.53 Aligned_cols=230 Identities=10% Similarity=-0.061 Sum_probs=158.8
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCCC-CHhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRP-GLSTWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
++.++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667888999999999999999999988764 45678889999999 999999999999999876 677888888
Q ss_pred HHHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChH
Q 012234 182 SLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257 (468)
Q Consensus 182 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (468)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 88888 899999999998887764 4444555555554400 0045555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHH
Q 012234 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAH----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISE 329 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 329 (468)
+|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 33444445555554 56666666666666542 234455556666666 666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 376 (468)
|++.|++.....+...+..+...+.. .+++++|...++++.+.+|++
T Consensus 205 A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 66666655312235566666777776 777888888888887777654
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=4e-14 Score=119.77 Aligned_cols=194 Identities=15% Similarity=0.079 Sum_probs=114.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 012234 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217 (468)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 217 (468)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++.+.+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666777777777776666542 3345556666666666666666666666666654 334455555666
Q ss_pred HHHhc-----------CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 218 TYAKT-----------GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 218 ~~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
++... |++++|+..|++..+ .+...+..+..++...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666677666666543 234556666667777777777777777776654 46666666777
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
++...|++++|...|+++.+. .+.+...+..+...+.+.|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777776643 1224556666666777777777777666654
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=3e-15 Score=131.78 Aligned_cols=244 Identities=14% Similarity=0.002 Sum_probs=145.7
Q ss_pred hcCCChhHHHHHHHHhhhCCCC---CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 17 SQGGFYEECKALFREMLNSPVL---RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
...|++++|++.|+++. .... +.+...+..+...+...|++++|...++++++..+. +..++..+..++...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 34566677777777766 3210 112445566666666667777777777666665432 555666666666666666
Q ss_pred HHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 012234 94 DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173 (468)
Q Consensus 94 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 173 (468)
++|...|++..+. ...+..++..+..++...|++++|...++++.+. .|+
T Consensus 94 ~~A~~~~~~al~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~ 143 (275)
T 1xnf_A 94 DAAYEAFDSVLEL----------------------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPN 143 (275)
T ss_dssp HHHHHHHHHHHHH----------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHhc----------------------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC
Confidence 6666666544320 0123456666667777777777777777776664 344
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC-------cchHHHH
Q 012234 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-------LIIWTAI 246 (468)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l 246 (468)
.......+..+...|++++|...+....... +++...+ .++..+...++.++|...+.+....+ ..++..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 4344444444555677777777776666543 2333333 35666666777777777777766533 3567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
...+...|++++|...|++.... .|+. +.....++...|++++|...+
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888888888765 3422 122244556677777777665
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=9.2e-14 Score=120.58 Aligned_cols=196 Identities=11% Similarity=0.016 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 3445566666666777777666666543 244566777777777888888888887777653 335667777777788
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
..|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887751 2344 45667777778888888888888887762 2335777888888888888888888
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..++++.+..|.+...+..++.++...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888887654
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.8e-13 Score=118.69 Aligned_cols=207 Identities=12% Similarity=0.014 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (468)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------- 102 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------- 102 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c-------------
Confidence 345555666666666666666666665542 2234444445555555555555555555544432 1
Q ss_pred HhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
.+...+..+...+...|++++|..+++++...+..| +...+..+...+...|++++|...+
T Consensus 103 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 103 ------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233455566666677777777777777766532334 3456667777778888888888888
Q ss_pred HHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
+++.+. .+.+...+..+...+...|++++|...++++ . .+.+...+..+...+...|+.++|.+.++++.+..|++
T Consensus 165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 887754 1334667777888888888888888888776 2 33456778888888889999999999999999998887
Q ss_pred cchHH
Q 012234 377 TGNYI 381 (468)
Q Consensus 377 ~~~~~ 381 (468)
+....
T Consensus 243 ~~~~~ 247 (252)
T 2ho1_A 243 LEYQE 247 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.2e-13 Score=121.25 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=187.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CCcc----hHHHHHHH
Q 012234 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLI----IWTAIISA 249 (468)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~ 249 (468)
.+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|+..+++..+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34566778899999999999999999875 34556788899999999999999999998776 2332 48889999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 335678889999999999999999999999853 23356677777734444569999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CCC-----cchHHHHHHHHHHcCChHHH
Q 012234 330 ATEFVSKMP-VKP-SAKVWGALLYGASISGD---VELGKFVCDHLFEIE---PEN-----TGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 330 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A 396 (468)
|.+.|+++. ..| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|.+.|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999883 334 57888888889988888 888999999998874 432 25788899999999999999
Q ss_pred HHHHHHHHhCC
Q 012234 397 DRVREQMKESG 407 (468)
Q Consensus 397 ~~~~~~m~~~~ 407 (468)
.+.+++..+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998754
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=2e-14 Score=123.99 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 3344444444445555555554444431 223344444445555555555555555554432 1223344444444445
Q ss_pred ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 323 RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
+.|++++|...++++. .+.+..++..+...+...|++++|...++++.+..|+++.++..+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 5555555555444431 1223444455555555555555555555555555555544444433
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=2.9e-14 Score=122.96 Aligned_cols=197 Identities=9% Similarity=0.082 Sum_probs=155.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344566677777888888888888887765 345678888889999999999999999988763 3467888889999
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864 24467788899999999999999999999873 345688999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+..++++.+..|.++.++..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.5e-13 Score=116.88 Aligned_cols=196 Identities=9% Similarity=0.034 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (468)
..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33445555566666666666666665443 234566667777777778888888777776652 33566777777788
Q ss_pred hcc-CCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHH
Q 012234 286 AHS-GLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 286 ~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
... |++++|...++++.+. +..|+ ...+..+...+...|++++|+..++++. .+.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 8888888888887752 23343 5667777778888888888888887762 23357778888888888888888
Q ss_pred HHHHHHHHHhhCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 362 GKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 362 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|...++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 78888888888888888888888888887654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.8e-14 Score=134.84 Aligned_cols=262 Identities=12% Similarity=0.019 Sum_probs=164.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHHHHc----C-CCCchhHHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPNA----VTISSIFSLFSHFSNLKGGKEIHGYAVKN----R-YDRNIYVATAI 215 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 215 (468)
+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++.+.+. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555555555555555555432 1111 23444455555555555555555544432 1 01122344555
Q ss_pred HHHHHhcCChHHHHHHHhhccCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC
Q 012234 216 IDTYAKTGFLHGAQRVFDRFKGR---------SLIIWTAIISAYAAHGD-----------------ASKAVSLFNEMLNN 269 (468)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~~~ 269 (468)
...|...|++++|...+++..+. ...++..+...|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55666666666666665554321 12356666677777777 77777777665432
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC--
Q 012234 270 ----GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-- 338 (468)
Q Consensus 270 ----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 338 (468)
+..+ ....+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 2346677778888888888888888887653111111 2367778888889999999988887762
Q ss_pred --CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 339 --VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE------NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 339 --~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
... ...++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 1567788888999999999999999998887432 2347888999999999999999999988764
Q ss_pred C
Q 012234 407 G 407 (468)
Q Consensus 407 ~ 407 (468)
.
T Consensus 373 ~ 373 (411)
T 4a1s_A 373 A 373 (411)
T ss_dssp C
T ss_pred H
Confidence 3
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=6.9e-14 Score=130.44 Aligned_cols=129 Identities=16% Similarity=0.008 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC----CCCC----HH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP----VKPS----AK 344 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~ 344 (468)
++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++.. ..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3444455555555555555555554432110111 1244455555555555555555555431 0111 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555566666665555555542211 33455555556666666666655555433
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=4.3e-13 Score=113.97 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (468)
..+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+.+.. +
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~------------- 73 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-P------------- 73 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C-------------
Confidence 455666666666666666666666665542 2334455555555555555555555555554432 1
Q ss_pred HhcCChHHHHHHHhhccCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
.+..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...
T Consensus 74 ------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 74 ------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp ------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334455566666667 777777777777766322333 45666677777778888888888
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VK-PSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
++++.+. .+.+...+..+...+.+.|++++|...++++. .+ .+...+..+...+...|+.+.+...++.+.+..|
T Consensus 136 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 136 LKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 8777753 12346677777778888888888888887762 23 4566777777778888899999998888888888
Q ss_pred CCcchHHHH
Q 012234 375 ENTGNYIIM 383 (468)
Q Consensus 375 ~~~~~~~~l 383 (468)
+++.....+
T Consensus 214 ~~~~~~~~l 222 (225)
T 2vq2_A 214 YSEELQTVL 222 (225)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 877665443
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=8.7e-14 Score=126.00 Aligned_cols=263 Identities=15% Similarity=0.054 Sum_probs=172.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCC-CchhHHHH
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPN----AVTISSIFSLFSHFSNLKGGKEIHGYAVKN----RYD-RNIYVATA 214 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 214 (468)
.....+...|++++|+..++++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33445556666666666666655542 112 234455555566666666666665554432 111 12334555
Q ss_pred HHHHHHhcCChHHHHHHHhhccC-----CC----cchHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKG-----RS----LIIWTAIISAYAAHGD--------------------ASKAVSLFNE 265 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~ 265 (468)
+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666667777777766665442 11 1256667777777777 7788777776
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHh
Q 012234 266 MLNN----GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSK 336 (468)
Q Consensus 266 m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 336 (468)
.... +..| ....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 1111 1346777788888899999999988887643111111 33677788888999999999998887
Q ss_pred CC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 337 MP----VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 337 ~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.. ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 62 1122 5677888889999999999999999998874322 34788999999999999999999999
Q ss_pred HHhCC
Q 012234 403 MKESG 407 (468)
Q Consensus 403 m~~~~ 407 (468)
..+..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 87743
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.7e-13 Score=125.47 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhhccC---CCcchHHHHHHHH
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF-LHGAQRVFDRFKG---RSLIIWTAIISAY 250 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 250 (468)
..|..+...+...|++++|...++.+++.. +.+..++..+..++...|+ +++|+..|+++.. .+..+|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467777888899999999999999999876 5567788899999999997 9999999999875 4567899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhc-cCChH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSR-ARRIS 328 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~~~~~ 328 (468)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+. .| +...|+.+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 336788999999999999999999999999964 44 67889999999998 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC--------
Q 012234 329 EA-----TEFVSKM-PVKP-SAKVWGALLYGASISG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG-------- 391 (468)
Q Consensus 329 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 391 (468)
+| ++.|++. ...| +...|..+...+...| ++++|++.+.++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 3344 6789999999998888 689999999998 888999999999999999975
Q ss_pred -ChHHHHHHHHHH-Hh
Q 012234 392 -RWDEADRVREQM-KE 405 (468)
Q Consensus 392 -~~~~A~~~~~~m-~~ 405 (468)
.+++|+++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=3.9e-13 Score=110.47 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=140.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
+..+|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45578888888889999999999999888753 335678888888999999999999999888764 233566777778
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
..+...++++.|...+.+.. .+.+...+..+...+...|++++|++.++++.+.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999999888773 3446788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 012234 397 DRVREQMKESG 407 (468)
Q Consensus 397 ~~~~~~m~~~~ 407 (468)
++.+++.++..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999988753
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=4.6e-13 Score=124.85 Aligned_cols=304 Identities=9% Similarity=0.001 Sum_probs=186.1
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 116 (468)
+....+......+...|++++|...++++++..+... ..++..+..++...|++++|...|++.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------- 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------- 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------
Confidence 3444555666677778888888888888877653311 245667777888888888888776543
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC
Q 012234 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV-RPN----AVTISSIFSLFSHFSN 189 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~ 189 (468)
+.+...... ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 74 -----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 74 -----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 222222221 1133566677777777888887777777654210 011 2244455555555555
Q ss_pred --------------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHH
Q 012234 190 --------------------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAII 247 (468)
Q Consensus 190 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~ 247 (468)
++.|...+....+. +.....+ ...++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la 194 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLG 194 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHH
Confidence 44444444333221 1111000 012455566
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHH
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNG-IQPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMV 318 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 318 (468)
..+...|++++|...+++..+.. -.++ ..++..+...+...|++++|...+++......-.++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 66667777777777776664320 0111 235666777777888888888888776542111111 45667777
Q ss_pred HHHhccCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHH
Q 012234 319 GVLSRARRISEATEFVSKMP----VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMA 384 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~ 384 (468)
..|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++.+.. +....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 88888888888888887662 1122 5577888889999999999999999988773 22345677888
Q ss_pred HHHHHcCChHH
Q 012234 385 NLYSQAGRWDE 395 (468)
Q Consensus 385 ~~~~~~g~~~~ 395 (468)
.++...|+...
T Consensus 355 ~~~~~~g~~~~ 365 (406)
T 3sf4_A 355 DLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHhhHhHH
Confidence 88888887643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=1.3e-13 Score=130.97 Aligned_cols=191 Identities=8% Similarity=-0.036 Sum_probs=152.9
Q ss_pred chhHHHHHHHHHHhcCCh-HHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFL-HGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
+...+..+...|...|++ ++|+..|++..+ .+..+|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344444555555555555 555555555432 23456777888888888899999999888875 567788888888
Q ss_pred HHhcc---------CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc--------CChHHHHHHHHhCC-CCC----
Q 012234 284 ACAHS---------GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA--------RRISEATEFVSKMP-VKP---- 341 (468)
Q Consensus 284 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~-~~~---- 341 (468)
.+... |++++|...|+++.+. .+.+...|..+..+|... |++++|++.|++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 9999999999998864 133577888888888888 89999999998873 344
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+...|..+..++...|++++|.+.|+++.+.+|+++.++..++.++...|++++|++.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999999999999999999999999999975433
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=8e-13 Score=123.60 Aligned_cols=277 Identities=13% Similarity=0.051 Sum_probs=163.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHh
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL----WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 120 (468)
+..+...+...|++++|...++++++.++. +. .++..+..+|...|++++|...|++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------- 112 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD----------------- 112 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 344555666777777787777777776433 22 35666777777777777777766543
Q ss_pred cCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCC----
Q 012234 121 HGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GV-RPNAVTISSIFSLFSHFSN---- 189 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~---- 189 (468)
+.+.+.... ....++..+...|...|++++|+..+++.... +- .....++..+...+...|+
T Consensus 113 -------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 113 -------LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 222222211 12345667777777888888888877776542 10 1112344555555555555
Q ss_pred -------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHHHHHHHcC
Q 012234 190 -------------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAAHG 254 (468)
Q Consensus 190 -------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g 254 (468)
+++|...+.+..+. ......+ ...++..+...+...|
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 44444444433221 1111000 1124555566666666
Q ss_pred ChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC----CHhHHHHHHHHHhccC
Q 012234 255 DASKAVSLFNEMLNNGI-QPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP----SVEHYACMVGVLSRAR 325 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~ 325 (468)
++++|...+++..+... .++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH 317 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 66666666666544210 011 23566677777777888887777776654211011 1456677777788888
Q ss_pred ChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 326 RISEATEFVSKMP----VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 326 ~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
++++|...+++.. ..+ ...++..+...+...|++++|...++++.+..+
T Consensus 318 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888777652 011 144677788888899999999999999888764
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=1.1e-12 Score=121.43 Aligned_cols=158 Identities=9% Similarity=0.025 Sum_probs=81.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC------chhHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQAS----GVRP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR------NIYVAT 213 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 213 (468)
....+...|++++|+..+++.... +-.+ ...++..+...+...|+++.|...+....+..... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776553 1111 12355556666666666666666666555421110 122444
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKG-----RSL----IIWTAIISAYAAHGDASKAVSLFNEMLNN----GI-QPDPVTFT 279 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 279 (468)
.+...|...|++++|...|++..+ .+. .++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 455555555555555555554332 111 24555555555566666666555555441 12 11234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhh
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555566666655555544
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=5e-13 Score=123.75 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=173.9
Q ss_pred HHHHHHccCChhhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCChHHHHHHHhhccC-----CC-----cchHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKN----RYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RS-----LIIWT 244 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 244 (468)
....+...|++++|...++.+.+. +-.+ ...++..+...|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999874 1111 346778899999999999999999887653 11 24788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhc---CC-CCCHhHHH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNGI-QPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQY---GI-QPSVEHYA 315 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 315 (468)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998865311 112 2478889999999999999999999887511 22 22456788
Q ss_pred HHHHHHhccCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 316 CMVGVLSRARRISEATEFVSKMP------VKPS-AKVWGALLYGASISGD---VELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.+...|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ +++|..++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998762 1222 2335667778888888 77777777765 222445567889999
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 012234 386 LYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=2.1e-12 Score=116.84 Aligned_cols=278 Identities=9% Similarity=0.008 Sum_probs=147.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 121 (468)
+......+...|++++|...++++++..+... ..++..+..++...|++++|...+++..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 70 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL----------------- 70 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 33444556667777777777777777643311 3456667777777777777777765432
Q ss_pred CCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC-----
Q 012234 122 GFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV-RPN----AVTISSIFSLFSHFSN----- 189 (468)
Q Consensus 122 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~----- 189 (468)
.+...... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 -------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 71 -------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp -------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred -------HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccc
Confidence 11111111 1123455666666677777777776666543210 011 1244445555555555
Q ss_pred ---------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHHHHHHH
Q 012234 190 ---------------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAA 252 (468)
Q Consensus 190 ---------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~ 252 (468)
++.|...+...... ......+ ...++..+...+..
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHH
Confidence 44444444333221 0000000 01234444455555
Q ss_pred cCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhc
Q 012234 253 HGDASKAVSLFNEMLNN----GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSR 323 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 323 (468)
.|++++|...+++..+. +..+ ...++..+...+...|++++|...+++......-.++ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 55555555555554331 0000 1224555666666667777666666665432110111 3455666677777
Q ss_pred cCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 324 ARRISEATEFVSKMP----VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
.|++++|...+++.. ..+ ...++..+...+...|++++|...++++.+..+
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 777777777766551 011 134666777788888888888888888877654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=2.5e-11 Score=108.57 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 156 EAVLDLVREMQASGVRPNAVTISSIFSLFS-------HFSNL-------KGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
++|...|++.+... +.+...|..++..+. ..|+. ++|..+|+..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666666542 334445555544443 24554 6666666666663113344566666666666
Q ss_pred cCChHHHHHHHhhccCC---Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGR---SLI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-AHSGLVDKAWD 296 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 296 (468)
.|++++|..+|+++.+. +.. +|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777665542 222 56667777777777777777777776643 22333333332221 12577777777
Q ss_pred HHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP----VKP--SAKVWGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 297 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
+|++..+.. +.+...|..++..+.+.|++++|..+|++.. .+| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776542 2345667777777777777777777777662 133 35567777777777777777777777777
Q ss_pred hhCCCCc
Q 012234 371 EIEPENT 377 (468)
Q Consensus 371 ~~~~~~~ 377 (468)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.8e-10 Score=112.58 Aligned_cols=399 Identities=8% Similarity=0.010 Sum_probs=228.3
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCC---hHHHHHHHHHHHHhCC-CCchHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---IVFGMEVHNFVIESHI-KMDLWI 79 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 79 (468)
-|..+|..++..+.+.+.++.+..+|+.+... .|.+...|...+..-.+.++ .+.+.++|+..+...+ +|+...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 46788999999999999999999999999843 45667778888888788888 9999999999888652 467778
Q ss_pred HHHHHHHHHhCCCH--------HHHHHHHhhcC------CC-CeehHHHHHHHHH---------hcCCHHHHHHHHhhCC
Q 012234 80 CNALIGMYAKCGSL--------DYARALLDEMS------DK-DEVSYSAIISGYM---------VHGFVEKAMDLFQVMK 135 (468)
Q Consensus 80 ~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~ 135 (468)
|...+....+.++. +...++|+... ++ +...|...+.-.. ..++++.+..+|....
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88777766655543 33446666532 22 3456777665443 2345677888888877
Q ss_pred C-CC--H-hHHH---HHHHHH----------HhCCChHHHHHHHHHHHH--CCCC---------------C-----CH--
Q 012234 136 R-PG--L-STWN---AVISGL----------VQNNRHEAVLDLVREMQA--SGVR---------------P-----NA-- 174 (468)
Q Consensus 136 ~-~~--~-~~~~---~l~~~~----------~~~g~~~~a~~~~~~m~~--~~~~---------------p-----~~-- 174 (468)
. |. . .+|. .+.... -...+++.|...+.++.. .++. | +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 22 1 2222 222111 001123334444443321 0110 1 00
Q ss_pred -HHHHHHHHHHHccC-------ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhccC---CCcch
Q 012234 175 -VTISSIFSLFSHFS-------NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ-RVFDRFKG---RSLII 242 (468)
Q Consensus 175 -~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~~~~ 242 (468)
..|...+.---..+ ..+.+..+|++++... +....++...+..+...|+.++|. .+|++... .+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 12222222211111 1233455666666543 345566666666666667766665 66666543 23334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGI---------QPD------------PVTFTAVLSACAHSGLVDKAWDIFNAM 301 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (468)
|...+...-+.|+++.|..+|+++..... .|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55566666667777777777776654210 121 224555666666666777777777776
Q ss_pred hhhcCCCCCHhHHHHHHHHHhcc-CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q 012234 302 SGQYGIQPSVEHYACMVGVLSRA-RRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--- 375 (468)
Q Consensus 302 ~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 375 (468)
.+.. ..+....|...+..-.+. ++.+.|.++|+..- .+.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 6430 111223333333222233 34677777766551 2334555666666666667777777777777766652
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345666666666677777777777776654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.6e-13 Score=121.54 Aligned_cols=240 Identities=11% Similarity=0.082 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc------CC-
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQAS-------GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN------RY- 205 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 205 (468)
.++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++.+.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888888888888888888887762 12233455667777777888888888877776653 11
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-----------SLIIWTAIISAYAAHGDASKAVSLFNEMLNN----- 269 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----- 269 (468)
+....++..+...|...|++++|...|++..+. ...++..+...+...|++++|..+++++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122344555566666666666666665543320 0123444444444445555555544444332
Q ss_pred -CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhc------CCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 012234 270 -GIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQY------GIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVK 340 (468)
Q Consensus 270 -~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 340 (468)
+..|+ ..++..+...+...|++++|...++++.+.. ...+. ...+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 11111 2233444444444444444444444443210 00000 00000
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
....+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0112222233344555666677777777777777778888888888888888888888887765
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=2.9e-12 Score=105.18 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
+..+|..+...|...|++++|+..|++..+ .++.++..+..+|...|++++|...+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 455677778888888888888888877654 345678888888889999999999998887753 3356677777788
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++.. .+.+..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988864 23457788888999999999999999998873 344688899999999999999999
Q ss_pred HHHHHHHHhhCCCCc
Q 012234 363 KFVCDHLFEIEPENT 377 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~ 377 (468)
++.|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988653
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=1.6e-10 Score=106.47 Aligned_cols=263 Identities=13% Similarity=0.088 Sum_probs=174.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHHHHcCCC-Cc----hhHHHH
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAV----TISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RN----IYVATA 214 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 214 (468)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+......... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445666777777777777776643112221 3445556667777777777777776653211 11 123455
Q ss_pred HHHHHHhcCChHHHHHHHhhccC-----CC------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKG-----RS------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ--P--DPVTFT 279 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~-----~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~ 279 (468)
+...+...|++++|...+++... .+ ..++..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66777788888888887776543 11 134566777888889999999998887653211 1 235677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH-----HHHHHHhccCChHHHHHHHHhCC-CCCC-----HHHHHH
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-----CMVGVLSRARRISEATEFVSKMP-VKPS-----AKVWGA 348 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~~ 348 (468)
.+...+...|++++|...+++.............+. ..+..+...|++++|..++++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 778888889999999999988764311111111121 23344778899999999998873 1221 335667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-----C-cchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPE-----N-TGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+...+...|++++|...++++....+. + ..++..++.++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788888999999999999988776321 1 236777889999999999999998887663
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=8.1e-12 Score=102.38 Aligned_cols=162 Identities=16% Similarity=0.089 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555544321 223445555555566666666666666665543 1224455556666666
Q ss_pred ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 323 RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
..|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666552 23456677777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCC
Q 012234 401 EQMKESG 407 (468)
Q Consensus 401 ~~m~~~~ 407 (468)
++..+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8876643
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=4.7e-12 Score=120.31 Aligned_cols=205 Identities=8% Similarity=-0.116 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 59 VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 59 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
+.+...++...... +.+...+..+..++...|++ ++|+..|++..+ | +..+|..+...|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444433322 22444455555555555555 555555554432 1 3445555555555555555555555554
Q ss_pred CC--CCHhHHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CChhhHHH
Q 012234 135 KR--PGLSTWNAVISGLVQN---------NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF--------SNLKGGKE 195 (468)
Q Consensus 135 ~~--~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~ 195 (468)
.+ |+...+..+...+... |++++|+..+++..+.. +.+...+..+..++... |++++|..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 43 4445555666666666 66666666666666542 33445566666666665 66666666
Q ss_pred HHHHHHHcCCC--CchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 196 IHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 196 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
.|+.+.+.... .+...+..+..+|...|++++|...|++..+ .+..++..+..++...|++++|+..+.+
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666665311 3555666666667777777777777666543 2334566666666677777776665443
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=4.9e-11 Score=110.06 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=113.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC------CchhHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGV-RPN----AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD------RNIYVAT 213 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 213 (468)
....+...|++++|+..+++...... .++ ..++..+..++...|+++.|...+..+.+.... ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677777777777777765310 122 234555666667777777777766665542110 0123444
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKG-----RS----LIIWTAIISAYAAHGDASKAVSLFNEMLN-----NGIQPDPVTFT 279 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 279 (468)
.+..+|...|++++|...|++..+ .+ ..++..+..+|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 555566666666666665554432 11 12455555566666666666666665554 21 11244555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCC---CCCHhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGI---QPSVEHYACMVGVLSRARR---ISEATEFVSKMPVKPS-AKVWGALLYG 352 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 352 (468)
.+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+..+++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5566666666666666666665542111 1112233344444445555 5555555555432221 1233334444
Q ss_pred HHHcCChHHHHHHHHHHH
Q 012234 353 ASISGDVELGKFVCDHLF 370 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~ 370 (468)
|...|++++|...++++.
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444443
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=4.2e-11 Score=107.08 Aligned_cols=213 Identities=10% Similarity=0.042 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCh-------HHHHHHHhhccC---C-CcchHHHHHHHHHH
Q 012234 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-------TGFL-------HGAQRVFDRFKG---R-SLIIWTAIISAYAA 252 (468)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 252 (468)
++|..+|+.++... +.++.++..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 5567778777777753 5886 899999998765 2 34589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH-hccCChHH
Q 012234 253 HGDASKAVSLFNEMLNNGIQPD-PV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL-SRARRISE 329 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~ 329 (468)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+. .+++...|....... ...|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 454 33 7888999999999999999999999853 233445554443332 23799999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC-CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI---EPE-NTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
|.++|++.. .+.+...|..++..+...|++++|..+|+++.+. .|. +...|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999872 2346889999999999999999999999999996 342 5668889999999999999999999999
Q ss_pred HhCCC
Q 012234 404 KESGL 408 (468)
Q Consensus 404 ~~~~~ 408 (468)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87543
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=1.2e-11 Score=122.40 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVG 319 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 319 (468)
.+++.+...+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|+..|++..+. .| +...|..+..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 467778888888888888888888887752 224677888888888889999999988888854 45 4678888888
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH
Q 012234 320 VLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 397 (468)
+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 899999999999988877 3344 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 012234 398 RVREQMKE 405 (468)
Q Consensus 398 ~~~~~m~~ 405 (468)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888765
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.4e-09 Score=106.39 Aligned_cols=383 Identities=9% Similarity=0.014 Sum_probs=260.7
Q ss_pred hhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHHHH
Q 012234 22 YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS---LDYARA 98 (468)
Q Consensus 22 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 98 (468)
..+.+..|++.... + +-|..+|..++..+.+.++++.+..+|+.++..- +.....|...+..-.+.|. ++.+..
T Consensus 48 ~~d~i~~lE~~l~~-n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE-Q-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH-C-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 44555566666523 2 5688899999999999999999999999999885 4577888888998889898 999999
Q ss_pred HHhhcCC-----CCeehHHHHHHHHHhcCCH--------HHHHHHHhhCC------CC-CHhHHHHHHHHHH--------
Q 012234 99 LLDEMSD-----KDEVSYSAIISGYMVHGFV--------EKAMDLFQVMK------RP-GLSTWNAVISGLV-------- 150 (468)
Q Consensus 99 ~~~~~~~-----~~~~~~~~li~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~-------- 150 (468)
+|++... +++..|...+.-..+.++. +...++|+... .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999875 5666777777655554443 33446776532 23 3457777776543
Q ss_pred -hCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHH----------ccCChhhHHHHHHHHHHc--CC----CCc--
Q 012234 151 -QNNRHEAVLDLVREMQASGVRPNAVTIS---SIFSLFS----------HFSNLKGGKEIHGYAVKN--RY----DRN-- 208 (468)
Q Consensus 151 -~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~----------~~~~~~~a~~~~~~~~~~--~~----~~~-- 208 (468)
..++.+.+..+|++.+......-..+|. ..-.... ...+++.|...+..+... ++ +..
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2345778999999988531111112222 2221110 011233444555443321 11 110
Q ss_pred -----------------hhHHHHHHHHHHhcC-------ChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH-
Q 012234 209 -----------------IYVATAIIDTYAKTG-------FLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV- 260 (468)
Q Consensus 209 -----------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~- 260 (468)
...|...+..-...+ ..+.+..+|++... .....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 123444444333322 12345667877654 35568888888888899999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc--------CCCCC------------HhHHHHHHHH
Q 012234 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY--------GIQPS------------VEHYACMVGV 320 (468)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~p~------------~~~~~~l~~~ 320 (468)
.+|++.... ++.+...+...+......|+++.|..+|+++.... .-.|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 44566667778888889999999999999988531 00132 3468888888
Q ss_pred HhccCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 321 LSRARRISEATEFVSKMPVK---PSAKVWGALLYGASIS-GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
..+.|..+.|..+|.++... .....|...+...... ++.+.|..+|+.+++..|.++..+...++.....|+.+.|
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 88999999999999987322 2334444444333444 4599999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 012234 397 DRVREQMKESGL 408 (468)
Q Consensus 397 ~~~~~~m~~~~~ 408 (468)
..+|++......
T Consensus 524 R~lferal~~~~ 535 (679)
T 4e6h_A 524 KSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHTTTSS
T ss_pred HHHHHHHHHhcC
Confidence 999999987654
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=5.4e-12 Score=112.91 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=97.5
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHH
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIES-------HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 114 (468)
..++..+...+...|++++|..+++++.+. ..+....++..+..+|...|++++|...|++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------- 96 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL---------- 96 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------
Confidence 456777778888888888888888888764 223345677788888888899888888876543
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--C--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHH
Q 012234 115 ISGYMVHGFVEKAMDLFQVMK--R--PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS------GVRP-NAVTISSIFSL 183 (468)
Q Consensus 115 i~~~~~~~~~~~A~~~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~ 183 (468)
.+++... . ....++..+...+...|++++|...++++.+. +..| ....+..+...
T Consensus 97 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 97 --------------AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp --------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 2222210 0 11234555556666666666666666655442 1111 22344455555
Q ss_pred HHccCChhhHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012234 184 FSHFSNLKGGKEIHGYAVKN------RYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRF 235 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (468)
+...|++++|...++.+.+. +..| ...++..+..+|...|++++|...|+++
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666665555543 1111 1233444555555555555555555443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=3.2e-11 Score=102.75 Aligned_cols=189 Identities=9% Similarity=-0.053 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 344555555666666666666666665442 334444445556666666666666666665532 113345555556
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCC-CH-------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQP-SV-------EHYACMVGVLSRARRISEATEFVSKM-PVKPS---AKVWGALLY 351 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 351 (468)
++...|++++|...+++..+. .| +. ..|..+...+...|++++|++.|++. ...|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 666666666666666665543 22 22 23444555555556666666655554 23343 334444444
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+... +...++++....+.++..+..+ .....+.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44322 2333444444444443333222 2333445599999999887753
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=1.5e-09 Score=99.94 Aligned_cols=267 Identities=11% Similarity=-0.014 Sum_probs=157.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc-c----hHHHHHHHhhccCChHHHHHHHHHHHHhCCC-Cc----hHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVLRPDG-V----TVVSVLQACGQSSDIVFGMEVHNFVIESHIK-MD----LWIC 80 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 80 (468)
.....+...|++++|...+++..... +++. . .+..+...+...|+++.|...+++....... .+ ..++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34445566788888888888876332 2221 1 3445556666778888888888777653211 11 1234
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCC---C-HhHHHHHHHHHHhCCChH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP---G-LSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~ 156 (468)
..+...+...|++++|...+++. +.+......+ . ...+..+...+...|+++
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 55666677777777777766533 2333322222 1 234566777788888888
Q ss_pred HHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHhcCChH
Q 012234 157 AVLDLVREMQASGVR--P--NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI-YVAT-----AIIDTYAKTGFLH 226 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~ 226 (468)
+|...+++....... + ...++..+...+...|++++|...++........++. ..+. ..+..+...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 888888887653211 1 2245666777778888888888888777654222211 1111 2234466778888
Q ss_pred HHHHHHhhccCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCCHHHH
Q 012234 227 GAQRVFDRFKGRSL-------IIWTAIISAYAAHGDASKAVSLFNEMLNN----GIQPDP-VTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 227 ~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a 294 (468)
+|...+++...... ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 88888777665322 13445566677777777777777665432 211122 2444455566666777777
Q ss_pred HHHHHHhhh
Q 012234 295 WDIFNAMSG 303 (468)
Q Consensus 295 ~~~~~~~~~ 303 (468)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666553
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=9.3e-11 Score=95.94 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
..+..+...+...|++++|...|+++.+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44566778888999999999999988763 45678888899999999999999999998763 446778888899999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
..|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998864 24467788889999999999999999998873 34468899999999999999999999
Q ss_pred HHHHHHhhCCCCcch
Q 012234 365 VCDHLFEIEPENTGN 379 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (468)
.++++.+..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988876543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=2.6e-10 Score=105.15 Aligned_cols=218 Identities=10% Similarity=0.031 Sum_probs=143.3
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHC----C-CCC-CHHHHHHHH
Q 012234 117 GYMVHGFVEKAMDLFQVMKR-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQAS----G-VRP-NAVTISSIF 181 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~~~~~l~ 181 (468)
.+...|++++|+..|++..+ ++ ..++..+...|...|++++|+..+++..+. + ..+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455556666555555432 22 235666777777777777777777776542 1 011 134566677
Q ss_pred HHHHccCChhhHHHHHHHHHHcC----CC-CchhHHHHHHHHHHhcCChHHHHHHHhhccC-----CC---cchHHHHHH
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNR----YD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RS---LIIWTAIIS 248 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~~~~~l~~ 248 (468)
.+|...|++++|...+..+.+.. .+ ....++..+..+|...|++++|...|++..+ .+ ..++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 77777777777777777666531 11 1234566778888888888888888877654 33 346777888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhccCC---HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGI---QPD-PVTFTAVLSACAHSGL---VDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.+.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|...+++.. ..+.....+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHH
Confidence 89999999999999998876321 122 3455666667777788 777777777632 1122345667788899
Q ss_pred hccCChHHHHHHHHhC
Q 012234 322 SRARRISEATEFVSKM 337 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~ 337 (468)
...|++++|.+.|++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999998875
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=8e-11 Score=100.23 Aligned_cols=205 Identities=8% Similarity=0.006 Sum_probs=160.7
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIIS 248 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 248 (468)
.|+..+......+...|++++|...|..+.+...+++...+..+..++...|++++|+..|++..+. +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888889999999999999999999999875477777777999999999999999999998753 3467888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC---HhHHHHHH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDP-------VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS---VEHYACMV 318 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 318 (468)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998853 2234 4577788889999999999999999984 3565 56777778
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
..|...|+. .++++. ...+...+.... ....+.+++|...++++.+..|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 887665543 233321 123344444433 34456789999999999999999988877776553
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=8.1e-11 Score=103.49 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=73.6
Q ss_pred CCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc------CC-CCchhHHHHHHH
Q 012234 152 NNRHEAVLDLVREMQAS-------GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN------RY-DRNIYVATAIID 217 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~ 217 (468)
.|++++|+..+++.++. +.+....++..+...+...|++++|...+..+.+. +. +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555554431 11222345555666666666666666666665543 11 122344555666
Q ss_pred HHHhcCChHHHHHHHhhccC-------C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHH
Q 012234 218 TYAKTGFLHGAQRVFDRFKG-------R-S---LIIWTAIISAYAAHGDASKAVSLFNEMLNN------GIQP-DPVTFT 279 (468)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~-------~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~ 279 (468)
.|...|++++|...|++..+ + + ..++..+...+...|++++|...++++.+. +..| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 66666666666666554432 1 1 123444445555555555555555554432 1011 123344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhh
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+...+...|++++|...++++.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444555555555555554444
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=2.6e-09 Score=92.87 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=116.0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-----SLIIWTAIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
+...++.....+ .++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555443 334444456667777777777777777776443 23456667778888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 268 NNGIQP-----DPVTFTAVLSA--CAHSG--LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 268 ~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
+. .| +..+...+..+ ....| ++.+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 55 34555555555 22223 788888888887653 3542333344447788888888888887542
Q ss_pred C------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 339 V------------KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 339 ~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
. +.++.+...++......|+ +|.++++++.+..|+++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 2346666566666666676 7788888888888887744
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=2.6e-09 Score=92.88 Aligned_cols=239 Identities=10% Similarity=0.032 Sum_probs=165.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (468)
+-..-.|++..++.-...+.. ......-..+.+++...|++... ....|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc---
Confidence 344556777777763322211 11222333445666666666531 11123322333333 333333
Q ss_pred HHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 227 GAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 227 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
|+..|++... ++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777777664 34456667888999999999999999998776532 245677888999999999999999999998
Q ss_pred hhcCCCC-----CHhHHHHHHHHH--hccC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 303 GQYGIQP-----SVEHYACMVGVL--SRAR--RISEATEFVSKMP-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 303 ~~~~~~p-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
+. .| +..+...|..++ ...| +..+|..+|+++. ..|+..+-..++.++...|++++|++.++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 56 355556666553 3334 8999999999984 4565344444555889999999999999988776
Q ss_pred ----------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 373 ----------EPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 373 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899999888888888897 8999999998865
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=2.2e-10 Score=113.29 Aligned_cols=164 Identities=9% Similarity=-0.061 Sum_probs=87.6
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
+.+|+.|...+.+.|++++|++.|++.. +.. +-+...|..+..++.+.|++++|...|++.++..+. +...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKAL-EVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456666666666666666666666665 221 223445556666666666666666666666665432 4555555666
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
+|...|++++|++.|++..+-+ ..+...|+.+..+|...|++++|++.|++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~----------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN----------------------------PAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666555443200 122344555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++.. +-+...+..+..++...|++++|.+.++++.
T Consensus 138 l~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 138 LKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 5432 2233445555555555555555555554443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.2e-09 Score=94.98 Aligned_cols=182 Identities=12% Similarity=0.022 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccCC---C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---S---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGI-QPD-PVTFT 279 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~ 279 (468)
+...+..+...+.+.|++++|...|+++.+. + ..++..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455566677777788888888888777652 2 34566677777788888888888887776421 112 34555
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHH
Q 012234 280 AVLSACAH--------SGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350 (468)
Q Consensus 280 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~ 350 (468)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 66666666 77788888888777754 232 22222211111100000 11246678
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHc----------CChHHHHHHHHHHHhCC
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQA----------GRWDEADRVREQMKESG 407 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 407 (468)
..+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 889999999999999999999998854 5788999999977 89999999999998754
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=5.4e-10 Score=98.95 Aligned_cols=217 Identities=12% Similarity=-0.012 Sum_probs=107.6
Q ss_pred CHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChhhHHHHH
Q 012234 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GVRPN-AVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
++++|...|++. ...|...|++++|+..|.+.... |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356666655543 55666777777777777666442 21111 235555666666666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCC----C
Q 012234 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGI----Q 272 (468)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~----~ 272 (468)
+...+.. ...|+...+ ..+++.+...|... |++++|+..|++..+... .
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 5554421 111111111 12344555556554 666666666665544210 0
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-----hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH--
Q 012234 273 PD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-----EHYACMVGVLSRARRISEATEFVSKMP-VKPSA-- 343 (468)
Q Consensus 273 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-- 343 (468)
+. ..++..+...+...|++++|...|++..+...-.+.. ..+..+..++...|++++|+..|++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 00 2345556666666666666666666665431111111 134555556666666666666666552 23321
Q ss_pred ----HHHHHHHHHHH--HcCChHHHHHHHHHHHhhCCCC
Q 012234 344 ----KVWGALLYGAS--ISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 344 ----~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
..+..++.++. ..+++++|+..|+++..++|.+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 12233334433 2345666666665555555433
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=1e-09 Score=84.33 Aligned_cols=126 Identities=20% Similarity=0.205 Sum_probs=79.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASIS 356 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (468)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++. .+.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444455555555555555555432 12234444555555555555555555555541 233455666677777777
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|...++++.+..|.++.++..++.+|.+.|++++|...++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888887777777777888888888888888888888777654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.1e-09 Score=95.16 Aligned_cols=203 Identities=9% Similarity=0.015 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhccC--C-C---cchH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKG--R-S---LIIW 243 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~ 243 (468)
.+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | + ..++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455677778888999999999999999999875221 156778899999999999999999999875 2 2 2457
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 244 TAIISAYAA--------HGDASKAVSLFNEMLNNGIQPDP-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 244 ~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
..+..++.. .|++++|+..|+++.+. .|+. ... .+...+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~--------------~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD--------------DATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH--------------HHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH--------------HHHHHHHHHHHH-----HHHHH
Confidence 777888888 99999999999999875 3332 111 111111111110 01224
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCcch
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASIS----------GDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
..+...|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|+..++++.+..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 556777888888888888887762 2232 45677777777765 88999999999999999988643
Q ss_pred ---HHHHHHHHHHcCChHH
Q 012234 380 ---YIIMANLYSQAGRWDE 395 (468)
Q Consensus 380 ---~~~l~~~~~~~g~~~~ 395 (468)
...+..++.+.+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4445555555544443
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=1.1e-09 Score=96.17 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=106.5
Q ss_pred hcCCChhHHHHHHHHhhh------CCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHh------CC-CCchHHHHHH
Q 012234 17 SQGGFYEECKALFREMLN------SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES------HI-KMDLWICNAL 83 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 83 (468)
...|++++|+..|++..+ ....+....++..+...+...|++++|...++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777777652 1111223556778888888889999999888888765 21 2235567778
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCC----CHhHHHHHHHHHHhCCChHHHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP----GLSTWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~ 159 (468)
..+|...|++++|...|++. +.+++....+ ...++..+...+...|++++|+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877644 2222222111 2345677777788888888888
Q ss_pred HHHHHHHHC------CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 160 DLVREMQAS------GVRP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 160 ~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
..+++..+. +..| ...++..+..++...|++++|...++.+.+
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888777653 1122 234566677777777777777777777665
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=5.1e-09 Score=88.72 Aligned_cols=183 Identities=12% Similarity=0.048 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-c---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS-L---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDP-VTFTA 280 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~~ 280 (468)
...+..+...+.+.|++++|+..|+++.+ |+ . ..+..+..++.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777888888888888887764 22 1 35667777888888888888888887764211 111 23333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 012234 281 VLSACAH------------------SGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVKP 341 (468)
Q Consensus 281 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 341 (468)
+..++.. .|++++|...|+++.+. .|+ ...+........ .....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH----------
Confidence 4444433 45667777777776643 232 222211111000 00000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778899999999999999999999876 56889999999999999999999999887654
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=6.7e-09 Score=91.88 Aligned_cols=197 Identities=9% Similarity=0.030 Sum_probs=131.5
Q ss_pred ehHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 109 VSYSAIISGYMVHGFVEKAMDLFQVMKR-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179 (468)
Q Consensus 109 ~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 179 (468)
..|......|...|++++|...|++... .+ ..+|+.+..+|...|++++|+..+++.++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------- 107 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------- 107 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 4577788889999999999999987753 12 3578999999999999999999999887531
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-CChHHHHHHHhhccCC-----C----cchHHHHHHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT-GFLHGAQRVFDRFKGR-----S----LIIWTAIISA 249 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~ 249 (468)
...|+...+. .++..+..+|... |++++|+..|++..+- + ..++..+...
T Consensus 108 -----~~~g~~~~~a---------------~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 108 -----THRGQFRRGA---------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp -----HHTTCHHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHcCCHHHHH---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 1122222111 1233344455553 5555555555544320 1 2356777888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH------hHHHHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDP------VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV------EHYACM 317 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~l 317 (468)
+...|++++|+..|++..+....... ..+..+..++...|++++|...|++..+ +.|+. ..+..+
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHH
Confidence 88889999999999888875322221 1566777788888999999999998873 34432 123445
Q ss_pred HHHHh--ccCChHHHHHHHHhCC
Q 012234 318 VGVLS--RARRISEATEFVSKMP 338 (468)
Q Consensus 318 ~~~~~--~~~~~~~A~~~~~~~~ 338 (468)
+..+. ..+++++|+..|+++.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHhccCC
Confidence 55554 5677999999998874
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=9.7e-09 Score=86.06 Aligned_cols=172 Identities=10% Similarity=-0.020 Sum_probs=135.3
Q ss_pred HHHHHhhccC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhh
Q 012234 228 AQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG----LVDKAWDIFNAMS 302 (468)
Q Consensus 228 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 302 (468)
|...|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444332 455677777778888888999999998888765 55666677777777 6 8999999999887
Q ss_pred hhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 012234 303 GQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMP-VKPS---AKVWGALLYGASI----SGDVELGKFVCDHLF 370 (468)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 370 (468)
+. .++..+..|...|.. .+++++|+++|++.. ..|. +..+..|...|.. .+++++|...|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356677778888877 789999999998885 3332 7888889888888 889999999999998
Q ss_pred hhCCCCcchHHHHHHHHHHc-C-----ChHHHHHHHHHHHhCCC
Q 012234 371 EIEPENTGNYIIMANLYSQA-G-----RWDEADRVREQMKESGL 408 (468)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 408 (468)
+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778899999999874 3 89999999999988775
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=3.3e-09 Score=93.51 Aligned_cols=175 Identities=7% Similarity=-0.044 Sum_probs=139.7
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
.....+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 34444444444455567777888899999999999999998762 335678888999999999999999999998754
Q ss_pred CCCCHhHHHH-HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHH
Q 012234 307 IQPSVEHYAC-MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYI 381 (468)
Q Consensus 307 ~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 381 (468)
.|+...... ....+...++.++|+..+++.. .+.+...+..+...+...|++++|...+.++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 455443332 2334667788888888887762 34568899999999999999999999999999999987 88999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 012234 382 IMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++.+|...|+.++|...+++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999887654
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=1.7e-10 Score=90.97 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=96.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccC
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRAR 325 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 325 (468)
..+...|++++|+..++..... .|+ ...+..+...|...|++++|...|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444556677777777665432 222 234455667777777777777777777753 33 5667777777777777
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHH-HHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 326 RISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFV-CDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 326 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
++++|+..|++. ...| +...|..+...+...|++++|.+. ++++.+++|.++.+|......+.+.|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777766 2344 567788888888888888765554 588888888888888888888877765
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=6.4e-09 Score=79.76 Aligned_cols=131 Identities=19% Similarity=0.236 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667778888888888888888887653 335667777888888888999999988888754 234566777888888
Q ss_pred hccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 322 SRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
...|++++|.++++++. .+.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88999999998888772 3446778888888999999999999999999888775
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=7.3e-10 Score=110.07 Aligned_cols=168 Identities=13% Similarity=-0.027 Sum_probs=118.7
Q ss_pred HhcCChHHHHHHHhhcc--------C---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 220 AKTGFLHGAQRVFDRFK--------G---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56777788877777765 2 344567777777778888888888887777642 23456677777777778
Q ss_pred CCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
|++++|...|+++.+. .| +...+..+..+|.+.|++++ ++.|++.. .. .+...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877753 34 45667777777788888877 77777662 23 3567777777888888888888888
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
|+++.+.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888777777777777766554
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=1.5e-06 Score=82.49 Aligned_cols=347 Identities=11% Similarity=0.042 Sum_probs=193.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCC-hHHHHHHHHHHHHh-CCC-CchHHHHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IVFGMEVHNFVIES-HIK-MDLWICNALI 84 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~ 84 (468)
+|...+..+-. |+++.+..+|++.. .. .|+...|...+....+.++ .+....+|+.++.. |.. .+..+|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal-~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCL-KK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHS-TT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHh-cc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45666666655 88999999999998 43 4788898888887766653 45677888888765 433 3667788777
Q ss_pred HHHH----hCCCHHHHHHHHhhcCCCCeehHHHHHHHHHh-----------------cCCHHHHHHHHhhCCC----CCH
Q 012234 85 GMYA----KCGSLDYARALLDEMSDKDEVSYSAIISGYMV-----------------HGFVEKAMDLFQVMKR----PGL 139 (468)
Q Consensus 85 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-----------------~~~~~~A~~~~~~~~~----~~~ 139 (468)
..+. ..|+.+.+.++|++...-....+..+-..|.. .+.+..|..+++.+.. .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 24678889999998765211111111111111 1122223333332221 233
Q ss_pred hHHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHH
Q 012234 140 STWNAVISGLVQNN--R-----HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212 (468)
Q Consensus 140 ~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 212 (468)
..|...+..-...+ - .+.+..+|++++... +.+...+...+.-+.+.|+.+.|..+++..... +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 45555554432221 1 345677888877652 445666766777777888889999999888887 3333322
Q ss_pred HHHHHHHHhcCChHHH-HHHHhhcc--C----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012234 213 TAIIDTYAKTGFLHGA-QRVFDRFK--G----------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a-~~~~~~~~--~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (468)
. .|......++. ..+.+... . .....|...+....+.++.+.|..+|++. .. ...+...|.
T Consensus 250 ~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 250 L----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp H----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred H----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 2 22222111111 11111110 0 01124555555555566677777777776 21 112333333
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012234 280 AVLSACAH-SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358 (468)
Q Consensus 280 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 358 (468)
.....-.. .++.+.|..+|+...+.++ .++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 22211111 2256777777777766432 223344555666666677777777777762 245666666666666677
Q ss_pred hHHHHHHHHHHHh
Q 012234 359 VELGKFVCDHLFE 371 (468)
Q Consensus 359 ~~~a~~~~~~~~~ 371 (468)
.+.+..+++++..
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666654
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=3.5e-09 Score=85.90 Aligned_cols=159 Identities=9% Similarity=0.031 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH-H
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV-L 321 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 321 (468)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445556666777777777776655431 224556666667777777777777777776643 2333322222111 1
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHcCChHHHH
Q 012234 322 SRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 397 (468)
...+...+|+..+++. ...| +...+..+...+...|++++|+..++++.+.+|.. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223456666655 2344 57888999999999999999999999999999864 558999999999999999999
Q ss_pred HHHHHHHh
Q 012234 398 RVREQMKE 405 (468)
Q Consensus 398 ~~~~~m~~ 405 (468)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=5.8e-09 Score=101.69 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=124.0
Q ss_pred cCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
.|++++|...|++..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988763 45688899999999999999999999998863 335778888999999999999999999
Q ss_pred HHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhC
Q 012234 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASIS---GDVELGKFVCDHLFEIE 373 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 373 (468)
++..+. .+.+...+..+...|.+.|++++|.+.+++.. . +.+...+..+...+... |+.++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 23357788999999999999999999999872 3 34678899999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 012234 374 PENTGNYIIMA 384 (468)
Q Consensus 374 ~~~~~~~~~l~ 384 (468)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=4.6e-09 Score=82.31 Aligned_cols=102 Identities=11% Similarity=-0.039 Sum_probs=90.3
Q ss_pred CCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 306 GIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 306 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.+.| +...+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..|+++.+.+|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3455 45677788888999999999999999883 3 4468899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 383 MANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=9.3e-10 Score=86.65 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=102.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISG 357 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 357 (468)
|...+...|++++|+..+..... ..| +...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778899999999988774 344 3456677899999999999999999987 3444 6889999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHH-HHHHHhC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV-REQMKES 406 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 406 (468)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5777663
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=2.3e-08 Score=83.45 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=61.5
Q ss_pred HHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL- 290 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~- 290 (468)
+..+|.+.|++++|+..|++..+ .++..+..+..++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 45555555555555555555443 233455555556666666666666666655532 2234455555555443332
Q ss_pred -HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHH
Q 012234 291 -VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGA 348 (468)
Q Consensus 291 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~ 348 (468)
.+.+...++... ...|....+..+..++...|++++|+..|++. ...|+......
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 223333333332 11222222333344445556666666666554 34555444333
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=2e-08 Score=89.59 Aligned_cols=219 Identities=12% Similarity=0.054 Sum_probs=141.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH-FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 230 (468)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777776665421 110 111 35555555555433 344556666666666
Q ss_pred HHhhccC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 012234 231 VFDRFKG-----RS----LIIWTAIISAYAAHGDASKAVSLFNEMLNNG---IQPD--PVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 231 ~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6655432 11 2367777788888888888888888765421 1121 3567778888888 99999999
Q ss_pred HHHHhhhhcCCCC----CHhHHHHHHHHHhccCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHH
Q 012234 297 IFNAMSGQYGIQP----SVEHYACMVGVLSRARRISEATEFVSKMP----VKPS----AKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 297 ~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
.|++......-.. ...++..+...|.+.|++++|+..|++.. ..++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988775321111 14567888899999999999999998772 1122 2356667777888899999999
Q ss_pred HHHHHHhhCCCCcch-----HHHHHHHHHHcCChHHHHHH
Q 012234 365 VCDHLFEIEPENTGN-----YIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 399 (468)
.++++. ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88865433 33455555 56777666553
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=2.6e-08 Score=83.21 Aligned_cols=128 Identities=11% Similarity=0.077 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHh
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLS 322 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 322 (468)
..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. .| +...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 348889999999999999999998863 336788889999999999999999999999864 45 5778888888876
Q ss_pred ccCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 323 RARR--ISEATEFVSKMPVKPSA--KVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 323 ~~~~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
..|+ ...+...++... .|++ ..+.....++...|++++|+..|+++++..|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 455666776664 3443 345556667778899999999999999999963
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=3.8e-08 Score=93.42 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=58.6
Q ss_pred cCC-ChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHH
Q 012234 18 QGG-FYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS-LDY 95 (468)
Q Consensus 18 ~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 95 (468)
+.| +++.|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377777777777622 132 8888899999888874 3577788887777766653 334
Q ss_pred HHHHHhhcCC------CCeehHHHHHHHHH----hcCCHHHHHHHHhhCCC
Q 012234 96 ARALLDEMSD------KDEVSYSAIISGYM----VHGFVEKAMDLFQVMKR 136 (468)
Q Consensus 96 A~~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~ 136 (468)
...+|+.... .+...|...+.-+. ..++.+.+..+|++...
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 4555554331 24456666665443 23556667777776654
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=2.9e-08 Score=83.19 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=98.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASI 355 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 355 (468)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|++.+++.. .+.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556677788888887777653 4566777777778888888888888777662 23457788888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCCc----------------chHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 356 SGDVELGKFVCDHLFEIEPENT----------------GNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|++++|+..++++.+..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999888887776 7888999999999999999999988877543
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=2.4e-08 Score=97.29 Aligned_cols=147 Identities=11% Similarity=-0.009 Sum_probs=81.2
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLF 263 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (468)
.|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+. +...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356666666666666543 334556666666777777777777777665542 3346666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc---CChHHHHHHHHhC
Q 012234 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA---RRISEATEFVSKM 337 (468)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~ 337 (468)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7766642 224556666666777777777777777766643 122455666666666666 6777777766655
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=6.3e-09 Score=81.58 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=90.9
Q ss_pred HHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 297 IFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 297 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
.|+++. .+.| +...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..|+++++.+
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455554 3345 45667778888899999999999998872 34478889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|+++.++..++.+|...|++++|...+++..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999987754
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=5.3e-08 Score=96.72 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=142.3
Q ss_pred HccCChhhHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHc
Q 012234 185 SHFSNLKGGKEIHGYAV--------KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAH 253 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 253 (468)
...|++++|.+.++.+. +.. +.+...+..+..+|...|++++|+..|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 44566788888899999999999999988775 4567888889999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 012234 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333 (468)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 333 (468)
|++++|+..|++..+.. +-+...+..+..++...|++++ ...|+++.+. -+.+...+..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998753 2246778888889999999999 9999998864 133567888899999999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhhCCCCcc
Q 012234 334 VSKMP-VKPS-AKVWGALLYGASISGD-----VELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 334 ~~~~~-~~~~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 378 (468)
|++.. ..|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99984 5665 5677777777766555 23334444444444444444
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=6.9e-09 Score=92.53 Aligned_cols=197 Identities=10% Similarity=-0.009 Sum_probs=148.0
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
..|++++|.+++++..+.... . + +...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888887764321 1 0 1115788888888665 45678899999999999988
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC--CC--CHhHHHHHHHHHhccCChHHHHHHHHh
Q 012234 266 MLNN----GIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI--QP--SVEHYACMVGVLSRARRISEATEFVSK 336 (468)
Q Consensus 266 m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 336 (468)
..+. +-.+. ..+|..+...|...|++++|...|++..+.+.- .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 357888889999999999999999987653211 12 14567788888988 999999999987
Q ss_pred CC-C-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc------chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 337 MP-V-----KP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT------GNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 337 ~~-~-----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.. . .+ ...++..+...+...|++++|+..++++.+..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 1 11 146788899999999999999999999999865433 3677788888899999999999999
Q ss_pred HH
Q 012234 403 MK 404 (468)
Q Consensus 403 m~ 404 (468)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=1.7e-07 Score=82.83 Aligned_cols=161 Identities=7% Similarity=-0.041 Sum_probs=121.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNG-IQPDPV----TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYA 315 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 315 (468)
..+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999887642 223321 2334666777888999999999998863111223 33688
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchH
Q 012234 316 CMVGVLSRARRISEATEFVSKMP-----VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNY 380 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 380 (468)
.+...|...|++++|+..|+++. .+.+ ..++..+...|...|++++|...++++.+..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999999888762 1112 3478889999999999999999999998874322 5678
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHh
Q 012234 381 IIMANLYSQAGR-WDEADRVREQMKE 405 (468)
Q Consensus 381 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 405 (468)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988765
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=5.1e-07 Score=79.32 Aligned_cols=214 Identities=9% Similarity=0.082 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--ChhhHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 012234 153 NRHEAVLDLVREMQASGVRPNA-VTISSIFSLFSHFS--NLKGGKEIHGYAVKNRYDRNIYVATAIIDTY----AKT--- 222 (468)
Q Consensus 153 g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 222 (468)
...++|+..++.++.. .|+. ..++.--.++...| +++++...+..+.... +-+..+++.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3345777777777765 3433 34455555555566 6666666666666654 22223333222222 222
Q ss_pred CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 012234 223 GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDAS--KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL------V 291 (468)
Q Consensus 223 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~ 291 (468)
+++++++.+++++.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 445555555555443 23334444444444445444 55555555544322 133344433333333333 4
Q ss_pred HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 012234 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV-ELGKFVCDHLF 370 (468)
Q Consensus 292 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 370 (468)
+++++.++++... .+-|...|+.+...+...|+. +.+..++.++.
T Consensus 203 ~eEl~~~~~aI~~----------------------------------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 203 DEELNYVKDKIVK----------------------------------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHHHHHHHH----------------------------------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHHHHHHHHHh----------------------------------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4444444444432 222444444444444444442 22333444444
Q ss_pred hhC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 371 EIE---PENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 371 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+.+ |.++.++..++++|.+.|+.++|.++++.+.
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 333 4455555555555555555555555555554
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=5.8e-08 Score=78.62 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 135 (468)
.+...+...|++++|...|++..+ .+...+..+...+...|++++|+..|++..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 344445555555555555555543 133444445555555555555555555444
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=1.7e-06 Score=75.95 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=132.8
Q ss_pred HHHhcC-CHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hc
Q 012234 117 GYMVHG-FVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNN--RHEAVLDLVREMQASGVRPNAVTISSIFSLF----SH 186 (468)
Q Consensus 117 ~~~~~~-~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~ 186 (468)
+..+.| ..++|+.+++.+.. |+ ..+|+.--.++...| ++++++++++.++... +-+...++.-...+ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 334444 45789999998875 43 456888888888888 9999999999998864 33444555444444 44
Q ss_pred c---CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH--HHHHHHhhccC---CCcchHHHHHHHHHHcCC---
Q 012234 187 F---SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH--GAQRVFDRFKG---RSLIIWTAIISAYAAHGD--- 255 (468)
Q Consensus 187 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~--- 255 (468)
. ++++++..++..+.+.. +-+..+++--.-++.+.|.++ ++++.++++.+ .|..+|+.........++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 5 78999999999999876 556677776666777788888 99999998876 455678777777777776
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHhh
Q 012234 256 ---ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAMS 302 (468)
Q Consensus 256 ---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 302 (468)
++++++.+++++... +-|...++.+...+.+.|+.. .+..+..++.
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 899999999998863 346777777777776666533 3444555544
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=1.3e-07 Score=83.64 Aligned_cols=164 Identities=6% Similarity=-0.071 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCCHHHHHHHHHHhhhhcC--CCCC--Hh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-P----VTFTAVLSACAHSGLVDKAWDIFNAMSGQYG--IQPS--VE 312 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~ 312 (468)
.+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778889999999999988877532211 1 2234456667888999999999988874311 1111 44
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------Cc
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP----VKPS-----AKVWGALLYGASISGDVELGKFVCDHLFEIEPE------NT 377 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 377 (468)
+++.+...|...|++++|+..+++.. ..|+ ..++..+...|...|++++|+..++++.+..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999998762 1222 258888999999999999999999999876421 14
Q ss_pred chHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 012234 378 GNYIIMANLYSQAGRWDEA-DRVREQMKE 405 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 405 (468)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777877654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=3.2e-08 Score=75.04 Aligned_cols=108 Identities=9% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 354 (468)
.+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555566666666666666665542 12245555566666666666666666665541 2 234556666666666
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
..|++++|++.|+++++++|.++.++..|..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666666555543
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=9.6e-08 Score=84.10 Aligned_cols=160 Identities=8% Similarity=-0.007 Sum_probs=100.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHH-H
Q 012234 74 KMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVI-S 147 (468)
Q Consensus 74 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~-~ 147 (468)
+.+...+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|...++++.. |+........ .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44555666677777778888888888877653 3 455677777777777777777777777764 4443222222 2
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChH
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 226 (468)
.+...++.++|+..+++..... +.+...+..+...+...|++++|...+..+.+..... +...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3555666677777777766653 3345566666667777777777777777776654222 2445556666666666666
Q ss_pred HHHHHHhh
Q 012234 227 GAQRVFDR 234 (468)
Q Consensus 227 ~a~~~~~~ 234 (468)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66555543
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=4.6e-08 Score=82.79 Aligned_cols=184 Identities=13% Similarity=-0.032 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-cc---hHHH
Q 012234 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS-LI---IWTA 245 (468)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~---~~~~ 245 (468)
...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ .. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455667778899999999999999999864322 235677789999999999999999999875 32 22 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 246 IISAYAA------------------HGDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 246 l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999875 34432 2211110 001111111
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
.....+...|.+.|++++|+..|+++. ..|+ ...+..+..++.+.|+.++|...++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122346677889999999999998873 3343 256888899999999999999999999888887654
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=2.9e-08 Score=75.27 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=90.3
Q ss_pred CCCC-HhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 307 IQPS-VEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 307 ~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
+.|+ ...+......|.+.|++++|++.|++. . .+.+...|..+..++...|++++|+..++++++.+|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 456778899999999999999999987 3 344689999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC
Q 012234 384 ANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=5.7e-08 Score=77.56 Aligned_cols=128 Identities=8% Similarity=-0.015 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|+..+++.. .+.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666777788888888888877753 13356677777888888888888888887762 334677888899999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH--HHHcCChHHHHHHHHHHHh
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANL--YSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 405 (468)
...|++++|...++++.+..|.+...+..+..+ +.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988888555554 8888999999999887654
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=8.6e-08 Score=80.23 Aligned_cols=171 Identities=9% Similarity=-0.044 Sum_probs=125.2
Q ss_pred HHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC----CHHHHHHH
Q 012234 24 ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG----SLDYARAL 99 (468)
Q Consensus 24 ~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 99 (468)
+|++.|++.. +. -+...+..+...+...+++++|..+|++..+.| +...+..+..+|.. + +.++|...
T Consensus 4 eA~~~~~~aa-~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQA-EA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHH-HT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHH-HC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4667777776 32 466677777777778888888888888888765 56667777777777 6 78888888
Q ss_pred HhhcCCC-CeehHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-----HhHHHHHHHHHHh----CCChHHHHHHHHHH
Q 012234 100 LDEMSDK-DEVSYSAIISGYMV----HGFVEKAMDLFQVMKRPG-----LSTWNAVISGLVQ----NNRHEAVLDLVREM 165 (468)
Q Consensus 100 ~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m 165 (468)
|++..++ ++.++..|...|.. .+++++|+..|++..+.+ ...+..|...|.. .+++++|+.+|++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8877654 56677777777776 778888888888877632 5677788888877 77888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHcc-C-----ChhhHHHHHHHHHHcC
Q 012234 166 QASGVRPNAVTISSIFSLFSHF-S-----NLKGGKEIHGYAVKNR 204 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 204 (468)
.+. ..+...+..+...|... | +.++|...++...+.|
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 775 23444556666666543 2 7888888888877766
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=9.5e-08 Score=72.99 Aligned_cols=116 Identities=7% Similarity=-0.037 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|++.+++.. .+.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455666666667777777777777776642 12245666667777777777777777776652 23356778888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
+...|++++|...++++.+..|.+...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888899999999998888888888888888888877664
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=1.4e-07 Score=71.08 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445666667777777777777777777653 13345667777777777788888887777662 23457778888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999998888888888888888776654
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=3.5e-07 Score=76.43 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChH
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 156 (468)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++... .+...|..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 344566667777777777777777766667777777777777777777777776653 34556777777888888888
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 157 AVLDLVREMQASGVRPN----------------AVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
+|+..|++..+.. +.+ ...+..+..++...|++++|...++.+.+..
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888777642 111 1456667777777777777777777777654
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=1e-07 Score=72.50 Aligned_cols=117 Identities=8% Similarity=-0.024 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
...+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777788888888888877753 13356677777778888888888888887762 23457788888889
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.77 E-value=8.4e-08 Score=86.53 Aligned_cols=126 Identities=13% Similarity=0.027 Sum_probs=96.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----------------HhHHHHHHHHHhccCChHHHHHHHHhCC--
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----------------VEHYACMVGVLSRARRISEATEFVSKMP-- 338 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 338 (468)
.+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444455555555555555554432 121 4677888888888899999998888772
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 012234 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA-DRVREQMKE 405 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 405 (468)
.+.+...|..+..++...|++++|+..|+++++.+|.+..++..++.++.+.|++++| ..+++.|..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446888999999999999999999999999999999999999999999999999999 446666643
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=9.5e-08 Score=74.23 Aligned_cols=101 Identities=12% Similarity=-0.045 Sum_probs=85.6
Q ss_pred CCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 307 IQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 307 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
..| +...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++.+.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 34556667778888999999999988872 344688888999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC
Q 012234 384 ANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+.+|...|++++|.+.+++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999887643
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=4.4e-08 Score=79.42 Aligned_cols=120 Identities=8% Similarity=0.040 Sum_probs=80.9
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHHcCCh--H
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG-ASISGDV--E 360 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~--~ 360 (468)
...|++++|...+++..+. .+.+...+..+...|...|++++|+..|++.. .+.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666543 12345666666777777777777777776652 22356666667777 6677777 8
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+|...++++.+..|.++.++..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877654
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=1.7e-08 Score=88.68 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (468)
.+..+...+.+.|++++|+..|++..+ .+...|..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455555566666666666655442 244556666667777777777777777766542 2245566667777777
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCH-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQPSV-EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.|++++|...|++..+. .|+. ..+...+....+......... ........+......+... ..|+.++|.+.+
T Consensus 85 ~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~ 158 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEEC 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 77777777777766543 1211 011111111111111111111 1122233344443333222 368889999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHhC
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQA-GRWDEADRVREQMKES 406 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 406 (468)
+++.+.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998877777777777776 7788999999888663
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.1e-07 Score=72.08 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455666677777788888888777662 23457788888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8899988888888887643
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=1.1e-06 Score=77.50 Aligned_cols=61 Identities=7% Similarity=-0.083 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccC-CHHHHHHHHHHhh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNN----GIQPD-PVTFTAVLSACAHSG-LVDKAWDIFNAMS 302 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 302 (468)
++..+...|...|++++|...+++..+. +..+. ..++..+..++...| ++++|...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3445555555555555555555554321 11122 345555666666666 3466666555544
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.7e-07 Score=69.07 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=82.0
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--NTGNYIIMAN 385 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 385 (468)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777888888888888887762 3346778888888999999999999999999999998 8889999999
Q ss_pred HHHHc-CChHHHHHHHHHHHhCCC
Q 012234 386 LYSQA-GRWDEADRVREQMKESGL 408 (468)
Q Consensus 386 ~~~~~-g~~~~A~~~~~~m~~~~~ 408 (468)
+|.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998877654
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=3.5e-07 Score=70.34 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=81.5
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 309 PSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.+...+..+...+...|++++|+..|++.. .+.+...|..+...+...|++++|...++++.+.+|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 356677777778888888888888887762 234577888888888999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhCC
Q 012234 387 YSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998887643
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=1.4e-07 Score=70.81 Aligned_cols=95 Identities=11% Similarity=-0.003 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
.+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..++++++.+|.++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556778889999999999998873 3 346888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 012234 391 GRWDEADRVREQMKESG 407 (468)
Q Consensus 391 g~~~~A~~~~~~m~~~~ 407 (468)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=5.3e-07 Score=77.39 Aligned_cols=126 Identities=12% Similarity=-0.063 Sum_probs=89.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH----HHHHHHHHHHH
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA----KVWGALLYGAS 354 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~ 354 (468)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 33556677778888888888777642 354335555566777888888888888766433332 35677777888
Q ss_pred HcCChHHHHHHHHHHHhhC--CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 355 ISGDVELGKFVCDHLFEIE--PE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8888888888888877432 33 34467788888888888888888888887643
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=2.2e-07 Score=74.11 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++.. . +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455666666777777777777777777653 12255666667777777777777777776652 2 2346666777777
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
+...|++++|+..|+++++..|++...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 7777777777777777777777666654433
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=6.2e-07 Score=76.96 Aligned_cols=136 Identities=9% Similarity=-0.021 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC--HhHHHHHHHHH
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS--VEHYACMVGVL 321 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 321 (468)
..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 44556777788888888888776654 344434445555778888888888888765531 1 121 23566778888
Q ss_pred hccCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 322 SRARRISEATEFVSKMP---VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
.+.|++++|+..|++.. ..|. .........++...|+.++|...|+++...+|. ..+...|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88999999999888773 1143 346677788888999999999999999999987 66555553
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=8.9e-07 Score=73.21 Aligned_cols=153 Identities=14% Similarity=0.008 Sum_probs=89.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc---CCCC-CHhHHHHHHHHHhccCCh
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY---GIQP-SVEHYACMVGVLSRARRI 327 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~ 327 (468)
..|++++|.++++.+... .......+..+...+...|++++|...+++..... +..| ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666643333221 11234455556666666666666666666554311 1111 234455566666677777
Q ss_pred HHHHHHHHhCC----CCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCc----chHHHHHHHHHHcCC
Q 012234 328 SEATEFVSKMP----VKP-S----AKVWGALLYGASISGDVELGKFVCDHLFEIE--PENT----GNYIIMANLYSQAGR 392 (468)
Q Consensus 328 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~ 392 (468)
++|...+++.. ..+ + ...+..+...+...|++++|...++++.+.. ..++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77666665541 111 2 3456667777778888888888888777652 1222 235778888888888
Q ss_pred hHHHHHHHHHHHh
Q 012234 393 WDEADRVREQMKE 405 (468)
Q Consensus 393 ~~~A~~~~~~m~~ 405 (468)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877765
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=3.7e-07 Score=75.45 Aligned_cols=96 Identities=15% Similarity=0.019 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
..+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..|+++.+..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777788888888888888887762 344678888999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 012234 390 AGRWDEAD-RVREQMKESG 407 (468)
Q Consensus 390 ~g~~~~A~-~~~~~m~~~~ 407 (468)
.++.+++. ..++.+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888777 5555554433
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=4e-07 Score=75.32 Aligned_cols=83 Identities=6% Similarity=-0.101 Sum_probs=41.8
Q ss_pred hcCCHHHHHH---HHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChh
Q 012234 120 VHGFVEKAMD---LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GVRP-NAVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 120 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 191 (468)
..|++++|.+ .+..-......++..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322223445666666666667777776666665541 1111 1234444555555566666
Q ss_pred hHHHHHHHHHH
Q 012234 192 GGKEIHGYAVK 202 (468)
Q Consensus 192 ~a~~~~~~~~~ 202 (468)
+|...+....+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=4.6e-07 Score=69.04 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=88.9
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 309 PSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.+...+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888899999999999999999987 3344 688999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhC
Q 012234 387 YSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~ 406 (468)
|.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998775
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=1.2e-07 Score=74.15 Aligned_cols=105 Identities=9% Similarity=-0.086 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.. . +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777888889999999999888754 13367778888888889999999999888872 3 3457788889999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
+...|++++|+..|+++.+..|+++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999988776543
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=7.7e-07 Score=78.60 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=112.6
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC---
Q 012234 41 DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-----LWICNALIGMYAKCGSLDYARALLDEMSD-----KD--- 107 (468)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--- 107 (468)
....+...+..+...|++++|.+.+...++...... ...+..+...+...|++++|+..|++..+ .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345666667777778888888888877776543211 12334466667777888888888776542 11
Q ss_pred -eehHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----HhHHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCC
Q 012234 108 -EVSYSAIISGYMVHGFVEKAMDLFQVMKR-----PG-----LSTWNAVISGLVQNNRHEAVLDLVREMQASG----VRP 172 (468)
Q Consensus 108 -~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p 172 (468)
..+|+.+...|...|++++|...|++..+ ++ ..+++.+..+|...|++++|+..+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 23677777888888888888888877651 22 2478888889999999999999998876531 111
Q ss_pred -CHHHHHHHHHHHHccCChhhH-HHHHHHHHH
Q 012234 173 -NAVTISSIFSLFSHFSNLKGG-KEIHGYAVK 202 (468)
Q Consensus 173 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 202 (468)
-..+|..+..++...|+.++| ...++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156778888899999999999 777777654
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=6.4e-07 Score=67.25 Aligned_cols=97 Identities=21% Similarity=0.259 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+...|++++|.++++++. .+.+..++..+...+...|++++|...++++.+..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888899999999999999999873 34468889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=3.3e-07 Score=69.50 Aligned_cols=94 Identities=9% Similarity=0.012 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc-------hHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-------NYII 382 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~ 382 (468)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..+++++++.|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888876 2334 5788889999999999999999999999998776543 5777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 012234 383 MANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++.+|...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999998776
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=9.6e-07 Score=65.52 Aligned_cols=108 Identities=12% Similarity=0.002 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 354 (468)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++.. .+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555555666666555555532 12234445555555555555555555555441 1223555555666666
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
..|++++|...++++.+..|.++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666665555554443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=6.3e-07 Score=66.55 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=87.6
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778889999999999999999873 34478889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=6.6e-05 Score=66.70 Aligned_cols=174 Identities=10% Similarity=0.015 Sum_probs=103.7
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-C
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT-G-F 224 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 224 (468)
...+.+..++|++++++++..+ +-+...++.--..+...| .++++..++..+.... +-+..+++.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344455567777777777652 223334555555555566 4777777777777654 33444555444444444 5 6
Q ss_pred hHHHHHHHhhccCCCc---chHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 012234 225 LHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDAS--------KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL--- 290 (468)
Q Consensus 225 ~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 290 (468)
+++++.+++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 7788888887776444 45555444444445555 77777887777542 366666666666666654
Q ss_pred ----HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 291 ----VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 291 ----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
++++++.++++... .+-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56777777776643 13356666665555555544
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1e-06 Score=68.61 Aligned_cols=95 Identities=12% Similarity=0.001 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKM-PVKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555566666666655554 23444 4555556666666666666666666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 012234 386 LYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~ 405 (468)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=7.5e-08 Score=84.48 Aligned_cols=97 Identities=12% Similarity=-0.076 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
+...+..+...+.+.|++++|+..|++.. ... +.+...|..+..++...|++++|...+++.++..+. +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556667777777777777777777776 321 235556666666777777777777777777665432 556666677
Q ss_pred HHHHhCCCHHHHHHHHhhcC
Q 012234 85 GMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~ 104 (468)
.+|...|++++|...|++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777776654
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=7.6e-07 Score=67.32 Aligned_cols=111 Identities=7% Similarity=-0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44556666777778888888888877753 13356777777888888888888888887762 2 33577888888889
Q ss_pred HHcCChHHHHHHHHHHHhhC------CCCcchHHHHHHHHH
Q 012234 354 SISGDVELGKFVCDHLFEIE------PENTGNYIIMANLYS 388 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~ 388 (468)
...|++++|+..++++.+.+ |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777777776666543
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=6.9e-07 Score=72.20 Aligned_cols=127 Identities=7% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH-HhccCCh--
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV-LSRARRI-- 327 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~-- 327 (468)
...|++++|...+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888988888887753 3467788888899999999999999999988642 3356777778888 7788998
Q ss_pred HHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 328 SEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 328 ~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
++|...++++. . +.+...+..+...+...|++++|...++++.+..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999998872 3 34578888999999999999999999999999999876543
No 156
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=6.7e-07 Score=69.90 Aligned_cols=100 Identities=6% Similarity=-0.092 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.. ..| ++..|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34555666677777777777777777753 12356677777777777777777777777762 233 467777888888
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCc
Q 012234 354 SISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
...|++++|+..|+++++..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888887653
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.7e-06 Score=67.25 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHH
Q 012234 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWG 347 (468)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~ 347 (468)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|+..+++.. . +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 455666677777777888888888877773 3454 5667777777888888888888887662 2 33577888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
.+..++...|++++|...++++.+..|.+..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88889999999999999999999999988877777666543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=6.5e-07 Score=69.41 Aligned_cols=109 Identities=11% Similarity=-0.076 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|+++... -+.+...|..+..+|.+.|++++|+..|++.. .+.++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666777888888888888888754 13356777788888888888888888888762 234567788888999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
...|++++|...++++.+..|.++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999988887665544333
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=1.4e-06 Score=69.47 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=62.9
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
+...+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..++++++.+|.++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455566666666677777776666652 2 235666666666666677777777777777666666666666677777
Q ss_pred HHcCChHHHHHHHHHHHhC
Q 012234 388 SQAGRWDEADRVREQMKES 406 (468)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~ 406 (468)
...|++++|...+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777666666553
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=1.2e-06 Score=66.38 Aligned_cols=98 Identities=16% Similarity=0.077 Sum_probs=88.4
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999873 3446888999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhCC
Q 012234 388 SQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+.|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=3.3e-06 Score=67.05 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+....+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555566666666666666666665542 223445555555555555555555555555544
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=0.00013 Score=64.84 Aligned_cols=85 Identities=5% Similarity=-0.112 Sum_probs=39.6
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccC-ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-C-CHH
Q 012234 18 QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS-DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC-G-SLD 94 (468)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 94 (468)
+.+..++|+++++.+. ..+ +-+...|+.--..+...| .++++++.++.++...++ +..+|+.-..++.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L-~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIV-RMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHH-HhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 3344455555555555 322 122233444333444444 355555555555555433 444555444444443 4 445
Q ss_pred HHHHHHhhcCC
Q 012234 95 YARALLDEMSD 105 (468)
Q Consensus 95 ~A~~~~~~~~~ 105 (468)
+++.+++.+.+
T Consensus 143 ~EL~~~~k~L~ 153 (349)
T 3q7a_A 143 SEIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=7.9e-07 Score=68.86 Aligned_cols=63 Identities=13% Similarity=-0.007 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCcchH----HHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEI-------EPENTGNY----IIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++.++.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48888889999999999999999999999 99999999 99999999999999999999998764
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=1.8e-06 Score=66.19 Aligned_cols=113 Identities=7% Similarity=-0.127 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALL 350 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~ 350 (468)
.+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667777777888888888888888887754 13356777778888888888888888887762 234577888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC-----CcchHHHHHHHH
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPE-----NTGNYIIMANLY 387 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~ 387 (468)
.++...|++++|+..++++.+..|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988776 444444444443
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.3e-06 Score=66.24 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHHHH
Q 012234 317 MVGVLSRARRISEATEFVSKMP-VKPS-A---KVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYS 388 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 388 (468)
+...+...|++++|...|+++. ..|+ . ..+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444555566666666555541 1221 2 355566666667777777777777777777766 555677777777
Q ss_pred HcCChHHHHHHHHHHHhC
Q 012234 389 QAGRWDEADRVREQMKES 406 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~ 406 (468)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776654
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=9.4e-06 Score=75.93 Aligned_cols=163 Identities=8% Similarity=-0.110 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhh---cCCCCC-HhH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDP----VTFTAVLSACAHSGLVDKAWDIFNAMSGQ---YGIQPS-VEH 313 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~ 313 (468)
+..++..|...|++++|.+.+..+... +..++. .+.+.+...+...|+++.+..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666666777777777666665431 111111 12222333344556777777766655431 122222 345
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC----cc
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-------VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIE---PEN----TG 378 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~ 378 (468)
+..+...|...|++++|..+++++. .++ ...++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777777777777777776551 112 14466667777777777777777777776552 221 13
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777777777776665543
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=3.3e-07 Score=68.39 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=55.5
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 324 ARRISEATEFVSKMP-V---KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
.|++++|+..|++.. . .| +...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666665552 2 13 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 012234 399 VREQMKES 406 (468)
Q Consensus 399 ~~~~m~~~ 406 (468)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.40 E-value=4.1e-06 Score=78.88 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...|..+..+|.+.|++++|+..+++.. .+.+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677888888999999999999998872 34468899999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHH-HHHHHHh
Q 012234 389 QAGRWDEADR-VREQMKE 405 (468)
Q Consensus 389 ~~g~~~~A~~-~~~~m~~ 405 (468)
+.|++++|.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998874 4555544
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=1.6e-06 Score=65.74 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------cchHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-------TGNYII 382 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 382 (468)
..+..+...+...|++++|...|++.. .+.+...+..+...+...|++++|...++++.+..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456666777777788888887777662 33467778888888888999999999999998887665 778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC
Q 012234 383 MANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++.+|.+.|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988774
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=1.6e-06 Score=68.89 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4677788888888889999999999888888888888888999999999999999888887764
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.38 E-value=1.1e-06 Score=83.15 Aligned_cols=119 Identities=8% Similarity=-0.007 Sum_probs=92.5
Q ss_pred HHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 012234 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDV 359 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 359 (468)
...+...|++++|...+++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888754 1234677888888888888888888888877 2344 578888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHH--HHHcCChHHHHHHHHH
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANL--YSQAGRWDEADRVREQ 402 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 402 (468)
++|++.++++.+..|.+...+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999888888 8888999999998873
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=6.4e-06 Score=62.26 Aligned_cols=110 Identities=6% Similarity=-0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-----CCCC----HHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-----VKPS----AKVWG 347 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~ 347 (468)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++.. ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555566666666666655543 12244555555666666666666666665541 1122 56677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+...+...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 778888888888888888888888877 56666666655443
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=4e-06 Score=61.40 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP---SAKVWGALLYG 352 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---~~~~~~~l~~~ 352 (468)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555666666777777766666643 12345566666666777777777777776652 222 46677777777
Q ss_pred HHHc-CChHHHHHHHHHHHhhCCCCc
Q 012234 353 ASIS-GDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 353 ~~~~-g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+... |++++|.+.++++....|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7788 888888888888887777654
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=5.7e-06 Score=65.20 Aligned_cols=129 Identities=15% Similarity=-0.001 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC----CCCC----HH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP----VKPS----AK 344 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~ 344 (468)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555566666666666555432100011 1345556666667777777777666541 1111 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEP------ENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++..+...+...|++++|...++++.+..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777788888888888888888876521 1234678889999999999999999988765
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=1.4e-05 Score=60.37 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=68.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCC-H---hHHHHHHHHHhccCChHHHHHHHHhCC-CCC-C---HHHHHHHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPS-V---EHYACMVGVLSRARRISEATEFVSKMP-VKP-S---AKVWGALLY 351 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 351 (468)
+...+...|++++|...|+++.+. .|+ . ..+..+..++.+.|++++|...|+++. ..| + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444556667777777777766653 222 2 355566667777777777777776652 222 2 566777788
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
++...|++++|...++++.+..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888899999999999998888877655544433
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=1.5e-06 Score=65.18 Aligned_cols=96 Identities=11% Similarity=-0.120 Sum_probs=63.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
..+..+...+.+.|++++|+..|++.. ... |.+...|..+..++...|++++|...+++.++..+. +...+..+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVC-QKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345556666677777777777777776 322 335556666666777777777777777777776543 55566667777
Q ss_pred HHhCCCHHHHHHHHhhcCC
Q 012234 87 YAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~ 105 (468)
+...|++++|+..|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766544
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.9e-06 Score=77.69 Aligned_cols=145 Identities=8% Similarity=-0.012 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4555566666777777777777776653 333321 22233333332221 1 12667778888
Q ss_pred hccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH-HcCChHHHHH
Q 012234 322 SRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS-QAGRWDEADR 398 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 398 (468)
.+.|++++|+..+++.. . +.+...|..+..++...|++++|+..|++++++.|.++.++..+..+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887762 2 3367788888888888888888888888888888888888888877743 4566777777
Q ss_pred HHHHHHhC
Q 012234 399 VREQMKES 406 (468)
Q Consensus 399 ~~~~m~~~ 406 (468)
+|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777554
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=1.1e-05 Score=72.54 Aligned_cols=129 Identities=9% Similarity=-0.055 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD--------------PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
..+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|...++++.+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4566666777777777777777777766422111 467778888888888888888888888864
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 012234 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELG-KFVCDHLFE 371 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 371 (468)
.+.+...+..+..+|...|++++|+..|++.. .. .+...+..+..++...|+.++| ...++++..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13367778888888888899999988888772 33 3577888888888888888887 445665543
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=6.3e-06 Score=75.14 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=79.0
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++.++.|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888889999999999999999887 3444 5788999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHH
Q 012234 388 SQAGRWDEADRV 399 (468)
Q Consensus 388 ~~~g~~~~A~~~ 399 (468)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00018 Score=63.55 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhhccC---CCcchHHHHHHHHHHcCC-hHHHHHHHH
Q 012234 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG--FLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGD-ASKAVSLFN 264 (468)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~a~~~~~ 264 (468)
+++..++..+.... +-+..+++.-.-++...| .+++++.+++++.+ +|..+|+.-.-++...|. ++++++.+.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444433 223333333333333333 24555555555443 233444444444444454 355555555
Q ss_pred HHHHC
Q 012234 265 EMLNN 269 (468)
Q Consensus 265 ~m~~~ 269 (468)
++++.
T Consensus 170 ~~I~~ 174 (331)
T 3dss_A 170 SLITR 174 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=1.1e-05 Score=66.52 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++..+..++...|++++|+..++++.+..|.++.++..++.+|...|++++|...+++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999999999999999999998775
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.24 E-value=7.7e-06 Score=58.80 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999999999999999999999999999999999988764
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00042 Score=61.20 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=128.9
Q ss_pred hHHHHHHHhhccC---CCcchHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 012234 225 LHGAQRVFDRFKG---RSLIIWTAIISAYAAHG--DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL-VDKAWDIF 298 (468)
Q Consensus 225 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 298 (468)
+++++.+++.+.. .+..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-.-++...|. +++++..+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777664 45567877777777877 4899999999999864 3367777766666777777 68999999
Q ss_pred HHhhhhcCCCCCHhHHHHHHHHHhcc--------------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc------
Q 012234 299 NAMSGQYGIQPSVEHYACMVGVLSRA--------------RRISEATEFVSKMP--VKPSAKVWGALLYGASIS------ 356 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------ 356 (468)
+++.+.. +-|...|+.....+.+. +.++++++.+.+.- .+-|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998752 34667777666555544 45788888888772 344677887665555554
Q ss_pred -----CChHHHHHHHHHHHhhCCCCcchHHHHHHHH---HHcCChHHHHHHHHHHHhC
Q 012234 357 -----GDVELGKFVCDHLFEIEPENTGNYIIMANLY---SQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 406 (468)
+.++++++.+.++.+..|++.-.+..++... ...|..+++...+.++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999998854444443322 2457788889999998863
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.23 E-value=1.2e-05 Score=75.65 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=99.8
Q ss_pred HHhccCCHHHHHHHHHHhhhhc--CCC---C-CHhHHHHHHHHHhccCChHHHHHHHHhCC---------CCCC-HHHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQY--GIQ---P-SVEHYACMVGVLSRARRISEATEFVSKMP---------VKPS-AKVWG 347 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~--~~~---p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~ 347 (468)
.+...|++++|+.++++..+.. -+. | ...+++.|...|...|++++|+.++++.- ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999988776431 112 2 24678899999999999999999988761 3444 56889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI-----EPENTGN---YIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|...|...|++++|+.++++++++ +|++|.+ ...+..++...|++++|..+++++++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 6777655 45778888899999999999999987553
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=4.3e-06 Score=66.37 Aligned_cols=77 Identities=14% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT-GNYIIMANLY 387 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~ 387 (468)
...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++...|++++|...++++++++|.++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4577788888899999999999888772 3 44688899999999999999999999999999999887 4455554443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=2.1e-05 Score=74.34 Aligned_cols=115 Identities=9% Similarity=-0.013 Sum_probs=55.6
Q ss_pred HHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012234 218 TYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 294 (468)
.+.+.|++++|...|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455566666666555433 233455555555666666666666665555542 22344555555555556666666
Q ss_pred HHHHHHhhhhcCCCCCHhHHHHHHHH--HhccCChHHHHHHHH
Q 012234 295 WDIFNAMSGQYGIQPSVEHYACMVGV--LSRARRISEATEFVS 335 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~ 335 (468)
...|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665555431 1122233333333 445555555555555
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3.8e-05 Score=71.75 Aligned_cols=158 Identities=6% Similarity=-0.032 Sum_probs=115.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPD----------------PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 311 (468)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|...+..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667777777777777766422111 1246778899999999999999999887543322322
Q ss_pred ----hHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q 012234 312 ----EHYACMVGVLSRARRISEATEFVSKM-------PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIE------ 373 (468)
Q Consensus 312 ----~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 373 (468)
.+.+.+...+...|+.++|.+++++. ...+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22334444556778999999888765 22333 5678889999999999999999999987651
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999988765
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=2.4e-06 Score=63.55 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHhhhhcCC-CC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGI-QP-SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
.|++++|+..|++..+. +. .| +...+..+...|...|++++|+..|++.. . +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777642 10 13 35566777777788888888888877762 2 335777888888888899999999
Q ss_pred HHHHHHHhhCCCCcchH
Q 012234 364 FVCDHLFEIEPENTGNY 380 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (468)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999888888876544
No 189
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=2.5e-05 Score=58.94 Aligned_cols=61 Identities=7% Similarity=-0.053 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
++..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...+...++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555556666666666665555432 22334444445555555555555555544443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.3e-05 Score=63.09 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGI-QPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEH 313 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 313 (468)
+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44445555555666666665555443210 011 134555666666667777777666665432110111 334
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP----VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
+..+...+...|++++|.+.+++.. ... ...++..+...+...|++++|...++++.+..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566666777777777777666541 011 13456777778888888888888888877653
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=6.1e-06 Score=63.88 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=70.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCC-------------HhHHHHHHHHHhccCChHHHHHHHHhC-CC-------
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPS-------------VEHYACMVGVLSRARRISEATEFVSKM-PV------- 339 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~------- 339 (468)
....+.+.|++++|+..|++..+- .|+ ...|..+..++.+.|++++|+..+++. ..
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555555555555555532 222 226667777777777777777766655 23
Q ss_pred CCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 340 KPS-AKVW----GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 340 ~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.|+ ...| .....++...|++++|+..|++++++.|.+......+..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 675 5677 8999999999999999999999999999887766555443
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=6.6e-06 Score=60.26 Aligned_cols=92 Identities=8% Similarity=-0.036 Sum_probs=72.6
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNYI 381 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 381 (468)
+...+..+...+.+.|++++|++.|++.. .+.+...+..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34566777778888888888888887762 33467888888999999999999999999999999988 67777
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 012234 382 IMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~ 401 (468)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00017 Score=69.56 Aligned_cols=169 Identities=8% Similarity=0.027 Sum_probs=131.0
Q ss_pred ChHHHHHHHhhccCC---CcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 012234 224 FLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGD----------ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG- 289 (468)
Q Consensus 224 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 289 (468)
..++|++.++++... +..+|+.-..++...|+ +++++..++++.+.. +-+...|..-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345678888777653 33567666666666666 899999999998863 336677777777777888
Q ss_pred -CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---------
Q 012234 290 -LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR-RISEATEFVSKMP-VKP-SAKVWGALLYGASIS--------- 356 (468)
Q Consensus 290 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------- 356 (468)
++++++..++++.+. -+-+...|+.-...+.+.| .++++++.++++- ..| +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999865 1346778877777777888 8899999998883 344 678888877776663
Q ss_pred -----CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHH
Q 012234 357 -----GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395 (468)
Q Consensus 357 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (468)
+.++++.+.+.++...+|.+..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999888554
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=2.8e-05 Score=57.41 Aligned_cols=77 Identities=10% Similarity=0.010 Sum_probs=63.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 330 ATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 330 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|+..|++. ...| +...+..+...+...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555544 2233 57788888889999999999999999999999999999999999999999999999999888764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=2.3e-05 Score=54.83 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+...|++++|+..+++.. .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456666677777777777777777652 23356777778888888888888888888888888888888888888776
Q ss_pred HcC
Q 012234 389 QAG 391 (468)
Q Consensus 389 ~~g 391 (468)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.9e-05 Score=71.11 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
..+..+...+.+.|++++|...|++....++... .+...|+..++...+. ...+..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4566778888899999999999998764322211 1222333344333221 136677888889999
Q ss_pred CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHH-HHHcCChHHHHHHH
Q 012234 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYG-ASISGDVELGKFVC 366 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~-~~~~g~~~~a~~~~ 366 (468)
++++|+..+++..+. .+.+...+..+..+|...|++++|+..|++.. ..|+ ...+..+... ....+..+.+...|
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988864 13367788888999999999999999998873 4553 4455555544 33456778888899
Q ss_pred HHHHhhCCCCc
Q 012234 367 DHLFEIEPENT 377 (468)
Q Consensus 367 ~~~~~~~~~~~ 377 (468)
.++....|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99988887654
No 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.00 E-value=6.1e-05 Score=52.91 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 340 KPSAKVWGALLYGASISGD---VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888876655 799999999999999999999999999999999999999999999886543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=0.00012 Score=56.01 Aligned_cols=111 Identities=11% Similarity=-0.055 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 012234 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFV 365 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 365 (468)
++++|...|++..+. | .|... |...|...+.+++|.++|++.....++..+..|...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666665543 2 22222 555555555666666666665333456666666666666 6677777777
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGL 408 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 408 (468)
|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777665 356677778888877 7788888888887777664
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=4.8e-05 Score=71.59 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...|..+..++.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|+..|++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999999999999999999999999998754
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=1e-05 Score=62.48 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 324 ARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGD----------VELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
.+.+++|++.+++.. . +.+...|..+..++...++ +++|+..|+++++++|++..+|..++.+|.+.|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555555441 2 2245555555555555544 579999999999999999999999999999875
Q ss_pred -----------ChHHHHHHHHHHHhCC
Q 012234 392 -----------RWDEADRVREQMKESG 407 (468)
Q Consensus 392 -----------~~~~A~~~~~~m~~~~ 407 (468)
++++|++.|++.++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999998754
No 201
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.91 E-value=5e-07 Score=81.48 Aligned_cols=238 Identities=12% Similarity=0.146 Sum_probs=175.7
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
+..|..|..+..+.++..+|++.|=+. -|+..|..++.++.+.|.+++-.+.+.-..+..- ++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 456888999999999999988876322 4566788999999999999999998877666533 4444568999
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CCHhH
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR------------------------PGLST 141 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~ 141 (468)
+|++.+++.+-++++ ..|+..-...+..-|...|.++.|.-+|..+.. .++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999987654332 236676777888888888888888888877642 56678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
|-.+..+|...+.+.-|.-.--.++ +.||. ...++..|...|.+++...+++...... +....+|+.|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999999999998887755544443 23332 3345667888999999999888777432 5678889988888887
Q ss_pred cCChHHHHHHHhhccC-----------CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKG-----------RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
- +.++..+.++-..+ .....|.-++-.|.+-.+++.|...
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 5 55666666655433 1345788899999998888877643
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=4.6e-05 Score=55.59 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+..+...+...|++++|+..++++++..|.++.++..++.+|.+.|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998754
No 203
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00013 Score=66.33 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012234 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218 (468)
Q Consensus 139 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (468)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...++.+.+.. +.+..+...+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3467777777888888888888888877653 3355667777777777777777777777777654 2344555555555
Q ss_pred HHhcCChHHHH
Q 012234 219 YAKTGFLHGAQ 229 (468)
Q Consensus 219 ~~~~g~~~~a~ 229 (468)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00015 Score=50.51 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788888999999999999999999999999999999999999999999999999999988753
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00025 Score=66.71 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLN-----NGI-QPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
+++.|...|...|++++|..++++..+ .|. .|+ ..+...+..++...+.+++|+.++.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677777777666666542 121 122 23445555666677777778777777765
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0013 Score=50.17 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHH
Q 012234 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISE 329 (468)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 329 (468)
+++++|+.+|++..+.| .|+.. +...|...+.+++|...|++..+. .++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 44444 666777778888899999988764 456777778888877 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 374 (468)
|.++|++.....++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988545678888888888888 8899999999999988753
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.0014 Score=63.24 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 254 GDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGL----------VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
...++|++.++++... .|+ ...|+.--.++...|+ +++++..++.+.+. -+.+..+|..-.-.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3457889999999885 444 4556655555556666 89999999999864 2446778887777888
Q ss_pred ccC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-------
Q 012234 323 RAR--RISEATEFVSKMP--VKPSAKVWGALLYGASISG-DVELGKFVCDHLFEIEPENTGNYIIMANLYSQA------- 390 (468)
Q Consensus 323 ~~~--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 390 (468)
+.+ +++++++.++++- .+-+..+|+.-...+...| .++++.+.++++.+.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 888 7799999999983 4457889999888888999 899999999999999999999999999998884
Q ss_pred -------CChHHHHHHHHHHHhCC
Q 012234 391 -------GRWDEADRVREQMKESG 407 (468)
Q Consensus 391 -------g~~~~A~~~~~~m~~~~ 407 (468)
++++++++.+++.+...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988887643
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.0003 Score=51.67 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 294 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
|...|++..+. .+.+...+..+...|...|++++|+..|++.. .+.+...|..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556665532 12345666677777777777777777777652 233466777777888888888888888888877
Q ss_pred hCCC
Q 012234 372 IEPE 375 (468)
Q Consensus 372 ~~~~ 375 (468)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7653
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.57 E-value=0.00026 Score=65.49 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=66.8
Q ss_pred ccCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcc---hHHHHH
Q 012234 323 RARRISEATEFVSKMP---------VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEI-----EPENTG---NYIIMA 384 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~~~~l~ 384 (468)
..|++++|+.++++.- ..|+ ..+++.|..+|...|++++|+.+++++++. +|+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567888888776641 2333 467889999999999999999999998875 455554 588999
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 012234 385 NLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998876
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.00078 Score=62.35 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=80.8
Q ss_pred HHHHhccCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcc---h
Q 012234 318 VGVLSRARRISEATEFVSKMP------VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEI-----EPENTG---N 379 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~ 379 (468)
+..+.+.|++++|+.++++.- ..|+ ..+++.++.+|...|++++|+.+++++++. +|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777776541 1222 457788888888889999998888888764 455544 5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (468)
++.|+.+|...|++++|..++++..+--.. .-...||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778899999999999999998888662110 123358888777777776666554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00036 Score=49.53 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=30.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+...|++++|+..++++.+..|.++. .+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555555 555555555555555555555555554
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.43 E-value=0.019 Score=42.15 Aligned_cols=141 Identities=9% Similarity=0.109 Sum_probs=103.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
+.-.|..++..++..+.... .+..-+|.++--....-+-+-..+.++.+-+-+.+. ..|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34568888888888887764 255566666665556666666677777765543322 2344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
....+-.+ ..+....+..+.....+|+-+.-.+++..+...+++++.....++.+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544444 2345556777888899999999999999987788889999999999999999999999999999999985
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.37 E-value=0.0018 Score=49.41 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=30.1
Q ss_pred CCHhHHHHHHHHHhccC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 309 PSVEHYACMVGVLSRAR---RISEATEFVSKMP-VK-P--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
++..+...+.-++++.+ +.++++.++++.- .. | +...+..+.-++.+.|++++|.+.++.+++.+|+|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34444444444444444 3334444444431 11 2 13334444444455555555555555555555544
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.37 E-value=0.00021 Score=55.12 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC----------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-
Q 012234 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR----------ISEATEFVSKM-PVKP-SAKVWGALLYGASIS- 356 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~- 356 (468)
.+++|...+++..+.. +.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444444444444320 1234444444444444433 34555555554 2333 355666666666554
Q ss_pred ----------CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 357 ----------GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 357 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
|++++|++.|+++++++|++......+- ..++|.++.-.+...+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSSS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccccc
Confidence 5899999999999999998753322221 23445666555555543
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.31 E-value=0.016 Score=58.69 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=103.6
Q ss_pred hccCChHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 53 GQSSDIVFGME-VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 53 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
...++++.|.+ ++.. ++ +......++..+.+.|..+.|.++.+.- ..-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 44667777655 4311 11 1223366777788888888888765321 11133456778888888888
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhH
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+.+.....| -
T Consensus 676 ~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~ 738 (814)
T 3mkq_A 676 TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------K 738 (814)
T ss_dssp TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------C
T ss_pred Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------c
Confidence 776 3567888889999999999999998887743 3445555555777776666655555544 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
++....+|.+.|++++|++++ .+.+++++|..+-+.
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 233444566667777766554 445667777765544
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.27 E-value=0.0018 Score=59.80 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHHhhhhc--CCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQY--GIQPS----VEHYACMVGVLSRARRISEATEFVSKMP---------VKPS-AKVWGALL 350 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 350 (468)
..|++++|+.++++..+.. -+.|+ ..+++.|...|...|++++|+.++++.- ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678899999988776421 12222 4678889999999999999999998761 3444 46789999
Q ss_pred HHHHHcCChHHHHHHHHHHHhh-----CCCCcchH
Q 012234 351 YGASISGDVELGKFVCDHLFEI-----EPENTGNY 380 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~ 380 (468)
..|...|++++|+.++++++++ +|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999875 67776544
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.25 E-value=0.0019 Score=45.60 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 317 MVGVLSRARRISEATEFVSKMP-VKP-SAK-VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
....+.+.|++++|+..+++.. ..| +.. .+..+..++...|++++|+..|+++.+.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4456677788888888887762 233 566 88888888999999999999999999999988876632 344
Q ss_pred HHHHHHHHHH
Q 012234 394 DEADRVREQM 403 (468)
Q Consensus 394 ~~A~~~~~~m 403 (468)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.0036 Score=57.95 Aligned_cols=102 Identities=9% Similarity=-0.027 Sum_probs=77.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhc--CCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC---------CCCC-HH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQY--GIQPS----VEHYACMVGVLSRARRISEATEFVSKMP---------VKPS-AK 344 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~ 344 (468)
.+..+...|++++|+.++++..+.. -+.|+ ..+++.|...|...|++++|+.+++++- ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445667889999999998887431 12222 4568888999999999999999988761 3443 46
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcchHHH
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEI-----EPENTGNYII 382 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 382 (468)
+++.|...|...|++++|+.+++++++. +|++|.+-..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7899999999999999999999999875 6777765443
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.0013 Score=46.76 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444445555555555555555554432 1123344445555555555555555555444
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.016 Score=51.45 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455555555555555666666666666666653 3444555556666666666666666555543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.038 Score=55.98 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=111.4
Q ss_pred HHhcCCChhHHHH-HHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 15 GYSQGGFYEECKA-LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 15 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
.....+++++|.+ ++..+ |+......++..+.+.|.++.|+++.+ +.. .-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 3345788888877 44221 212233777778888899998887652 111 123445678999
Q ss_pred HHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 012234 94 DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173 (468)
Q Consensus 94 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 173 (468)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|-
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 99999988774 567899999999999999999999998865 44555566667777776666555554431
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012234 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235 (468)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (468)
+.....++.+.|++++|.+ +|.+.+++++|..+-+..
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~----------------------~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKD----------------------LLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHH----------------------HHHHTTCHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHcCCHHHHHH----------------------HHHHcCChHHHHHHHHHh
Confidence 2333334455566655544 455667777777765553
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.79 E-value=0.011 Score=42.21 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP---------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.-+..+...+.+.|++..|..+|+... ..+...++..+..++.+.|+++.|...++++.+..|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455566666666666666665541 12346788889999999999999999999999999998776555
Q ss_pred HH
Q 012234 383 MA 384 (468)
Q Consensus 383 l~ 384 (468)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.017 Score=51.30 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=97.5
Q ss_pred cCCCcchHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC--CHHHH---HHHHHHh
Q 012234 236 KGRSLIIWTAIISAYA--AHGD---ASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAH---SG--LVDKA---WDIFNAM 301 (468)
Q Consensus 236 ~~~~~~~~~~l~~~~~--~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~~--~~~~a---~~~~~~~ 301 (468)
...++.+|...+.+.. ..++ ..+|..+|++..+. .|+ ...+..+..++.- .+ ..... ...++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3457788888887643 3333 57899999999985 565 4555555544432 11 11111 1122221
Q ss_pred hhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 302 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
......+.++.+|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1111235577888888777777899999999999883 568888888888999999999999999999999999664
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.63 E-value=0.0083 Score=51.07 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=69.7
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHc-CChHH
Q 012234 327 ISEATEFVSKM-PVKPS---AKVWGALLYGASI-----SGDVELGKFVCDHLFEIEPEN-TGNYIIMANLYSQA-GRWDE 395 (468)
Q Consensus 327 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 395 (468)
...|...+++. ...|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 35665 5578888888887 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 012234 396 ADRVREQMKESGLAKIPG 413 (468)
Q Consensus 396 A~~~~~~m~~~~~~~~~~ 413 (468)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877664344
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.57 E-value=0.014 Score=41.78 Aligned_cols=66 Identities=14% Similarity=-0.017 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIE-------PENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+..-+..+...+...|++..|...++++.+.. +..+.++..|+.+|.+.|++++|..++++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355667788999999999999999999998863 234567999999999999999999999999774
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.47 E-value=0.033 Score=38.73 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=54.8
Q ss_pred CCCHhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 308 QPSVEHYACMVGVLSRARR---ISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
++++..+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3466677777777654443 68888888877 2344 5777888888899999999999999999999887 333333
Q ss_pred HH
Q 012234 383 MA 384 (468)
Q Consensus 383 l~ 384 (468)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.42 E-value=0.74 Score=44.49 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHH
Q 012234 255 DASKAVSLFNEMLNNG-IQPDPV--TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 331 (468)
+.+.|...+....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677888877765432 222211 1222333333444244555555554432 233333334444455678888888
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 332 EFVSKMPVKP--SAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 332 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
..|..|...+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888885332 232233344566677888888888877764
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.41 E-value=0.017 Score=43.99 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-C-CCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 341 PSAKVWGALLYGASISG---DVELGKFVCDHLFEIE-P-ENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++..+...+..++++.+ ++++++.+++...+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444455555555544 3345555555555544 3 2344445555555555555555555555544
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.094 Score=41.05 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=48.9
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...++-+..
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566666666665554 2344566666666666666666666655543 333333444455555544444443
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
...| -++....++...|+++++.++|
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 3332 1233333344445555544443
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.34 E-value=9.7e-05 Score=67.00 Aligned_cols=237 Identities=11% Similarity=0.181 Sum_probs=152.4
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+..|..|..+....+++.+|++.|-+. .|+..|..+|.+..+.|++++-+.++...++..-.|... +.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHh
Confidence 4456777777777777777776665443 445566677777777777777777776655543233332 456667777
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC------------------------CCcch
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------------------------RSLII 242 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~ 242 (468)
.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 777666544432 35555555667777777777777766665442 36678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC-CCCHhHHHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI-QPSVEHYACMVGVL 321 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~ 321 (468)
|..+-.+|...+.+.-|.-.--.++- .|+. ...++..|...|-+++.+.+++.-. |+ ....-.|+-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 99999999999988877655444432 2221 2236667888888888888888766 33 34667788888777
Q ss_pred hccCChHHHHHHHHhC----CCC------CCHHHHHHHHHHHHHcCChHHHH
Q 012234 322 SRARRISEATEFVSKM----PVK------PSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~----~~~------~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
++- +.++.++.++-. .++ .....|.-++..|..-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 765 556666655543 111 13445777777777777777664
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.16 E-value=0.027 Score=41.21 Aligned_cols=89 Identities=16% Similarity=0.037 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCChHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE---ATEFVSKMP-VK-P--SAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~ 361 (468)
.....+.+-|.+.... | .|+..+-..+.-++.+...... ++.++.++- .. | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444444332 2 2444444445555555554433 555555542 11 2 12333444455555666666
Q ss_pred HHHHHHHHHhhCCCCcch
Q 012234 362 GKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~ 379 (468)
|.+.++.+++..|.|..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 666666666666555443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.36 Score=37.75 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 012234 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++...+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44567777777776655 3456677777777777777777777765532 333444445555555555444
Q ss_pred HHHHHc
Q 012234 198 GYAVKN 203 (468)
Q Consensus 198 ~~~~~~ 203 (468)
+.....
T Consensus 84 ~iA~~~ 89 (177)
T 3mkq_B 84 NIAQTR 89 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 444433
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.00 E-value=0.29 Score=36.51 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 340 KPSAKVWGALLYGASISGDV---ELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.|+..+-..+..++.++.+. .+++.+++...+..|. .......|+-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555555566666655533 4566666666665553 3334555666666777777777766666553
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.49 E-value=0.16 Score=37.19 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHhccCChHHHHHHHHhC
Q 012234 317 MVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~ 337 (468)
|.-++.+.|++++|.+.++.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 344455555555555555444
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.071 Score=52.48 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
...|...|+++.|..+.++++..-|.+..+|..|+.+|.+.|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556789999999999999999999999999999999999999999999988874
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.81 E-value=0.32 Score=41.50 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHHHcCCC
Q 012234 141 TWNAVISGLVQN-----NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH-FSNLKGGKEIHGYAVKNRYD 206 (468)
Q Consensus 141 ~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~ 206 (468)
.|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.+.+.+.++++......
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 556666666653 6666666666666554211124445555555555 36666666666666665444
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.76 E-value=0.87 Score=33.59 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=92.7
Q ss_pred hHHHHHHH--hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CeehHHHHHHHHHh
Q 012234 44 TVVSVLQA--CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMV 120 (468)
Q Consensus 44 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 120 (468)
+...|+.+ ..-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+- |. ..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~ 73 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DK 73 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hh
Confidence 33444444 344577777777777776653 4444555554444555555555555544321 11 23
Q ss_pred cCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 012234 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 200 (468)
.|+.......+-.+. .+....+.-+.....+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444444443 34455566677888888888888888886443 4777778888888888888888888888888
Q ss_pred HHcCCC
Q 012234 201 VKNRYD 206 (468)
Q Consensus 201 ~~~~~~ 206 (468)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 887753
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.73 E-value=0.27 Score=37.06 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
+|.++|.++|+.++.....-..+|...+..-.+.|+...|.+++.+.+..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 6777777777777666444455566666666777777777777777776543
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.43 E-value=0.34 Score=35.61 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 340 KPSAKVWGALLYGASISGDV---ELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.|+..+--.+..++.+..+. .+++.+++...+.+|. ....+..|+-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555556666655433 4566666666666553 344556666677777777777777766654
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.76 E-value=0.61 Score=35.15 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=42.8
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 324 ARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
.++.++|.++|+.+. .+-=...|......-.++|++..|.+++.++..+.|.+...+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 356666777666652 111267777777888889999999999999999888765554443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.25 E-value=0.87 Score=35.02 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=38.6
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc-------chHHHHHHHhhccCChHHHHHHHHHHHH
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG-------VTVVSVLQACGQSSDIVFGMEVHNFVIE 70 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (468)
|+-+.-++-.=+..+...|.++.|+-+...+....+..|+. .++..+..++...|++..|...|++.++
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44444455555666777777777777766644222122332 1345556666777777777777777644
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.14 E-value=3.9 Score=35.43 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=101.4
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHH----
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL---- 161 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---- 161 (468)
.....|++=+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHH
Confidence 3444566666666543 5556667777777777766432 3345556666555443
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCh-----hhHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 162 VREMQASGVRPNAVTISSIFSLFSHFSNL-----KGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 162 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
++-..+.+++++......++..+.....- .-......+..+.| ...++.....+...|.+.|++.+|+..|--
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 44445567777777777777666553321 11222333333333 234677888899999999999999887652
Q ss_pred ccCCCcchHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 235 FKGRSLIIWTAIISAYAAH---GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
-...++..+..++--+... |...++-- ..-..++ -|.-.++...|..+|+...+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2222344444444333332 32222211 1111222 345568888888888876543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.75 E-value=9.3 Score=38.70 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=49.5
Q ss_pred hcCChHHHHHHHhhccC-CCcc-hHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG-RSLI-IWT---AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 295 (468)
..|+.+.+..+.+.+.. .++. -|. .+.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 44555555555444432 2221 121 22334555566555555655555431 112222222222333334444444
Q ss_pred HHHHHhhhhcCCCCCHhHHHHHHHHHhccCCh-HHHHHHHHhCCCCCCHHHH
Q 012234 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-SEATEFVSKMPVKPSAKVW 346 (468)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 346 (468)
++++.+... ..|....-..+.-+....|.. .+++..+..+...+|..+-
T Consensus 615 rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 615 RIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 455444331 123332222232333333332 4555566655444444443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.58 E-value=0.43 Score=43.34 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCCce
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE-----SGLAKIPGR 414 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 414 (468)
+...++..+...|+..++...+..+...+|-+...+..++.+|.+.|+..+|.+.|+.+.+ .|+.|.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999999999999999999999999999999999999988755 488776653
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.33 E-value=3.2 Score=43.77 Aligned_cols=81 Identities=7% Similarity=-0.008 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcc----CCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFK----GRSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
-|..++..+.+.|.++.+.++-.... ..+. ..|..+.+++...|++++|...+-.+.....+ ...+..|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 45667777777787777766654332 1221 25788888999999999999988877665433 45666777
Q ss_pred HHHhccCCHHH
Q 012234 283 SACAHSGLVDK 293 (468)
Q Consensus 283 ~~~~~~~~~~~ 293 (468)
..++..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 77776666443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.03 E-value=2 Score=29.45 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+++.+++...++ +++..+.+ +..+.+.|++++|..+.+...-||...|-+|.. .+.|--+++..
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIR-------------ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 445555555555 55555443 235667788888888888777788888876644 56788888888
Q ss_pred HHHHHHHCCCCCCHHHH
Q 012234 161 LVREMQASGVRPNAVTI 177 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~ 177 (468)
.+..+..+| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887777666 4544444
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.82 E-value=2.2 Score=29.35 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+++.+++...++ +++..+.+ +..+.+.|++++|..+.+...-||...|-+|.. .+.|--+++..
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIR-------------LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 445555555555 55554433 234567777777777777777777777766644 45677777777
Q ss_pred HHHHHHHCCCCCCHHHH
Q 012234 161 LVREMQASGVRPNAVTI 177 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~ 177 (468)
.+..+..+| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 776666655 4444443
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=8.1 Score=35.66 Aligned_cols=90 Identities=10% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC---C-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCCc----ch
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP---V-KPS----AKVWGALLYGASISGDVELGKFVCDHLFEI---EPENT----GN 379 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~ 379 (468)
..|...|...|++.+|.+++.++. . ..+ ...+...+..|...+++..|..++.++... .++++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445566666666666666666552 0 111 234444556666667777776666665431 22222 24
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+...+..+...++|.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5556666666666666666555543
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.49 Score=46.66 Aligned_cols=120 Identities=9% Similarity=-0.010 Sum_probs=70.3
Q ss_pred HHHHhcCCC-hhHHHHHHHHhhhCCCCCCCcchH--HHHHHHhhccCCh-HHHHHHHHHHHHh------C-CCCc-----
Q 012234 13 IAGYSQGGF-YEECKALFREMLNSPVLRPDGVTV--VSVLQACGQSSDI-VFGMEVHNFVIES------H-IKMD----- 76 (468)
Q Consensus 13 i~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~--~~l~~~~~~~~~~-~~a~~~~~~~~~~------~-~~~~----- 76 (468)
+..+...|+ ++.|+.+|+++. ... |....+ ..++..+...++- -+|.+++.+.++. . ...+
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~-~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLT-KKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHH-HHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHH-hhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 333344555 477888888887 322 433332 2333333333322 2455555554431 1 1111
Q ss_pred -----hHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012234 77 -----LWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMK 135 (468)
Q Consensus 77 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 135 (468)
....+.-...+...|+++-|+.+-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11233334556678888888888887654 4 45688888888888888888888888886
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.91 E-value=1.6 Score=33.59 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
.-..+..+|.+.+++++|+.+++.++
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345566666666666666666664
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.31 E-value=17 Score=36.89 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~ 104 (468)
|..++.++.+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677777888888888888864
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.27 E-value=1.8 Score=29.96 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 445666777777777888999999999999999999999999998887653 3334567666643
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.08 E-value=14 Score=38.95 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=23.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
++..+...+..+.+.++..... .++..--.+..++...|++++|...|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444455554444433332 22222233444555555555555555554
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.86 E-value=2.7 Score=29.09 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=39.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.+..-|++.+..+.+.+|.+.+++..|.++++-+.....+...+|-.++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33567899999999999999999999999999888776555556666553
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.12 E-value=1.2 Score=32.84 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=45.7
Q ss_pred CCHhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 309 PSVEHYACMVGVLSRARR---ISEATEFVSKM-PVKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
|+..+--.+.-++.+... ..+++.++.++ ...| ....+..|.-++.+.|++++|.+..+.+++..|.|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 444444444555555443 33455555554 1223 245666677788888999999999999998888876543
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.12 E-value=4.5 Score=30.18 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=48.8
Q ss_pred CCCHhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 308 QPSVEHYACMVGVLSRARR---ISEATEFVSKM-PVKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
.|+..+--.+.-++.+... ..+++.+++++ ...| .......|.-++.+.|++++|.+..+.+++..|.|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555555555555555554 33455555555 1223 344566677889999999999999999999999886543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.03 E-value=3.3 Score=37.46 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----hcCCCCCHhHHH
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG----QYGIQPSVEHYA 315 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~ 315 (468)
..++.++...|++.+|...+..+... -+.+...+..+|.++...|+..+|++.|+.+.+ ..|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44566777888888888888887665 245777888888888888888888888877643 358888776543
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.24 E-value=14 Score=32.20 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=97.3
Q ss_pred HHHhCCCH---HHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 86 MYAKCGSL---DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 86 ~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
.....|++ =+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...|-++.
T Consensus 21 ~~I~~G~y~~~YEAHQ~~R-----------Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETR-----------LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHH-----------HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHH
Confidence 34445666 55655543 4455566677777777665432 23445556655444433
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHHccCChh-hHHHHHH----HHHHcC--CCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 163 ----REMQASGVRPNAVTISSIFSLFSHFSNLK-GGKEIHG----YAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 163 ----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
+-+.+.++++|..+...++..+.....-+ .-..+.+ +-.+.| ..-++.....+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 33344566777766666666665544321 1122222 333333 345677888889999999999999988
Q ss_pred HhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
|---.++++..+..++--+...+...++ +...-..++ -|.-.++...|..+++...+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 7422222224554444433333321111 222222233 34556788888877666553
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.43 E-value=18 Score=32.55 Aligned_cols=289 Identities=11% Similarity=0.022 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC--------CCeehHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCHhHH----
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSD--------KDEVSYSAIISGYMVHG-FVEKAMDLFQVMKR---PGLSTW---- 142 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~---~~~~~~---- 142 (468)
....|...|.+.|+.++..+++..... +.......++..+.... ..+.-.++..+..+ ..-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888777654 12334555666655432 23333333333321 111122
Q ss_pred --HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChhhHHHHHHHHHHc--CCCCchhHHH
Q 012234 143 --NAVISGLVQNNRHEAVLDLVREMQASGVRPNA-----VTISSIFSLFSHFSNLKGGKEIHGYAVKN--RYDRNIYVAT 213 (468)
Q Consensus 143 --~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 213 (468)
.-++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...++..++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 25677888888888888888887663111121 22334455666777777777777665542 1222222221
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHH-HcCChHHHHHHHHHHHH----CCCCC---CHHHHHHHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA-AHGDASKAVSLFNEMLN----NGIQP---DPVTFTAVLSAC 285 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~----~~~~p---~~~~~~~l~~~~ 285 (468)
.+..+ -...+. ..++|..|...|-+... .| .| +...|..+....
T Consensus 181 -~i~~~--------------------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 181 -ALDLQ--------------------------SGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIM 232 (394)
T ss_dssp -HHHHH--------------------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred -HHHHH--------------------------hhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHH
Confidence 11111 111233 34555555544444321 11 11 122343332222
Q ss_pred hccCCHHHHHHHHH-HhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 012234 286 AHSGLVDKAWDIFN-AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 286 ~~~~~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
. .. ..+...++. .....+ ..|....+..++.+| ..+++.+...++.... ...|+.....+-..+.+ -..
T Consensus 233 ~-~~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~--Ir~-- 304 (394)
T 3txn_A 233 L-GQ-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT--MLE-- 304 (394)
T ss_dssp T-TC-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH--HHH--
T ss_pred c-CC-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHH--
Confidence 2 22 112222221 111111 245555566666654 4467777777777653 34455432211111100 011
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
..+.++ ..|-....+..++..+.- ..+++...+-+|+..|.
T Consensus 305 -~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 -QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 112222 246666778888877643 67899999999998876
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.00 E-value=4 Score=29.95 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++|+.++.+. .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 344566667777777889999999999999999999999999999887643 4445567766643
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.68 E-value=6.8 Score=26.94 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
..++|..|-+.+...+. ...+-..-+..+.+.|+|++|..+.+...-||...|.++.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666665542 22222222345678899999999988888888888877654 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 012234 269 NGIQPDPVTFT 279 (468)
Q Consensus 269 ~~~~p~~~~~~ 279 (468)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.59 E-value=13 Score=29.88 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=6.4
Q ss_pred chHHHHHHHHHHHhCCC
Q 012234 76 DLWICNALIGMYAKCGS 92 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~ 92 (468)
+..+-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333333333333
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.18 E-value=16 Score=30.71 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=63.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHh----HHHHHHHHHhcc
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE----HYACMVGVLSRA 324 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 324 (468)
...+.|+.++|++....-++.. +-|...-..+++.+|-.|+++.|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 3455677777777776666652 345555666777777777777777777766643 44422 33333322
Q ss_pred CChHHHH-HHHHhCC----CCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 325 RRISEAT-EFVSKMP----VKPSAKVWGALLYGA--SISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 325 ~~~~~A~-~~~~~~~----~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
+... ++|..-. ......-...++.+. ...|+.+.|.++-.++.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1222111 111122223333333 3457777777777777777665444
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.08 E-value=7.4 Score=26.82 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
..++|..|-+.+...+. ...+-..-+..+.+.|+|++|..+.+...-||...|.++.. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666665442 22222222345677889999999988888888888877654 466777777777777766
Q ss_pred CCCCCCHHHHH
Q 012234 269 NGIQPDPVTFT 279 (468)
Q Consensus 269 ~~~~p~~~~~~ 279 (468)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.96 E-value=13 Score=29.50 Aligned_cols=18 Identities=11% Similarity=-0.152 Sum_probs=6.9
Q ss_pred CCCHhHHHHHHHHHHhCC
Q 012234 136 RPGLSTWNAVISGLVQNN 153 (468)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g 153 (468)
.++...-...+.++.+.+
T Consensus 87 d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 344333333333333333
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.98 E-value=14 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 356 SGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
.++..+...+|..+...+ ...+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444668888888877664 5566778888888888899999999888877776554
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.83 E-value=7.7 Score=28.52 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=41.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
+-.+..-|++.+..+.+.+|.+.+|+..|.++++-...+..+...+|-.++.
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3344578999999999999999999999999999988876555666766553
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.29 E-value=3.1 Score=34.92 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 320 VLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
...+.|.+++|++.+..- +..| |...=..|+..+|-.|++++|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677777777665443 3344 55566666777777777777777777777777653
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.60 E-value=24 Score=30.82 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=98.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF----NEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
++..-|.+.+++++|++++.. -...+.+.|+...|.++. +-..+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 445557777888888777542 233455666666555544 44556678888887777777766544
Q ss_pred CHH-HHHHHHHHhhh---hcCC--CCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 290 LVD-KAWDIFNAMSG---QYGI--QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 290 ~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
.-+ .=..+++++.+ ++|- .-|+.....+...|.+.+++.+|...|- ....+.+..+..++..+...+...++-
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccHH
Confidence 311 11223333321 1232 2367777788899999999999998884 233344466666665555444322222
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++ ...+--|...++...|..+++...+
T Consensus 188 lfi--------------aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 188 LYC--------------ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHH--------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 2233447778899999888777654
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.33 E-value=17 Score=29.00 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=34.2
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 119 (468)
++...-...+..+.+.++.+ +...+..+.. .++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555445555555555432 2222222222 2344444455555555554333333333333344444444444444
Q ss_pred hcCC
Q 012234 120 VHGF 123 (468)
Q Consensus 120 ~~~~ 123 (468)
+.++
T Consensus 107 ~~~~ 110 (211)
T 3ltm_A 107 QIGD 110 (211)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.17 E-value=17 Score=28.77 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 012234 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190 (468)
Q Consensus 114 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 190 (468)
.+..+.+.+..+....+.+.+..++...-...+.++...|..+ +...+..+.. .++...-...+.++.+.++.
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 3333333343333333333333444444334444444444332 2222223322 23444444444444444443
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.54 E-value=32 Score=29.74 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSL----FNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
.++..-|.+.+++++|++++.. -...+.+.|++..|-++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3455567777888888877543 23445666776666554 45555678888888888787776553
Q ss_pred CCHH-HHHHHHHHhhh---hcCC--CCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCh
Q 012234 289 GLVD-KAWDIFNAMSG---QYGI--QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS---GDV 359 (468)
Q Consensus 289 ~~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 359 (468)
..-+ .-.++++++.+ +.|- .-++.....+...|.+.|++.+|...|---. ..+...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCCc
Confidence 2111 11233333321 1122 2367778888888999999999988776321 12355555555544444 444
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++-.++. ..+-.|...|+...|..+++...+
T Consensus 185 ~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred chHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33322222 222346678899999998887654
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.41 E-value=35 Score=28.49 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=60.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLW--ICNALIGMYA 88 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 88 (468)
+.+...++.|+.+....+++.-. ......+...+ +.+...+..|+.+ +++.+++.|..++.. ...+.+...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 44555677788876666665432 21111122222 3344445566654 445556666554421 1123344555
Q ss_pred hCCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012234 89 KCGSLDYARALLDEMSDKDE---VSYSAIISGYMVHGFVEKAMDLFQVMKR 136 (468)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~ 136 (468)
..|+.+-+..+++.-...+. ..+ +.+...+..|+.+-...+++.-..
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCC
Confidence 67888777777765443321 112 223344566777766666665443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.23 E-value=16 Score=33.47 Aligned_cols=60 Identities=8% Similarity=-0.048 Sum_probs=25.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhc-CCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQY-GIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
...+...+.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444555555555555555444321 11111233334444444444444444444443
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.11 E-value=3.2 Score=38.71 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcc------hH-HHHHHHhhccCChHHHHHHHHHHHHh
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV------TV-VSVLQACGQSSDIVFGMEVHNFVIES 71 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 71 (468)
.+|.+++.|...+.+++|..+..... - |.+.. +| ..+.+...-.+++.+|.+.+....+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~-f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE-Y---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC-S---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc-C---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666666666666666666666553 1 11111 11 12233344455666666655555543
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.08 E-value=35 Score=30.16 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=17.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
...++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 4556666777777777777777765
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.20 E-value=35 Score=27.16 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 012234 152 NNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (468)
.+...++..+|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445566667777666654433 2345555555666666666666666666655555
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.62 E-value=27 Score=31.99 Aligned_cols=95 Identities=11% Similarity=0.022 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHH--HH
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKGR------SLIIWTAIISAYAAHGDASKAVSLFNEMLN---NGIQPDPVT--FT 279 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~--~~ 279 (468)
+...+...|.+.|+++.|.+.|.++... -+..+-..+..+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5567888899999999999998887641 224677778888888999999888888754 233333322 22
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhc
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQY 305 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (468)
.-...+...+++..|...|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 23334556788888888888887653
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.25 E-value=58 Score=29.27 Aligned_cols=160 Identities=12% Similarity=0.035 Sum_probs=89.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC----CC-c----chHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHH---
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKG----RS-L----IIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPDPVTFT--- 279 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~--- 279 (468)
.++..|...|++.+|..++.++.+ .| . ..+-.-++.|...+++.++...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777777777777776666543 11 1 24555677888999999999988877542 2334443322
Q ss_pred -HHHHHHh-ccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHH-----hCCCCCCHHHHH
Q 012234 280 -AVLSACA-HSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLSRARRISEATEFVS-----KMPVKPSAKVWG 347 (468)
Q Consensus 280 -~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~-----~~~~~~~~~~~~ 347 (468)
.-...+. ..+++..|...|-+..+.+.-..+ ...|..|..... ++..+.-.++. .. ..|+...+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHHHH
Confidence 2223456 789999999888776554321111 223433333332 22222222221 11 345555555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
.++.+ ...+++.....+++.....-..|+
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~ 289 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYKKELAEDV 289 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHSTTTTTTSH
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHHHHhcCh
Confidence 56655 466788877777766544333344
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.41 E-value=34 Score=25.84 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 360 ELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 360 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
++...+|..+...+ ...+..|...+..+...|++.+|.++++.-++.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33677777777653 5566678888888888888888888888877776554
No 281
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.78 E-value=75 Score=29.16 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhhhh-cCC--CCC--Hh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLN--NGIQPD---PVTFTAVLSACAHSGLVDKAWDIFNAMSGQ-YGI--QPS--VE 312 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--~p~--~~ 312 (468)
...|...+...|++.+|..++.++.. .|.... ...+...++.|...+++..|..++.++... ... .|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45677889999999999999999854 232222 235666778899999999999999887431 111 222 24
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC
Q 012234 313 HYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
.+...+..+...+++.+|-..|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5667777888889999998887766
No 282
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=65.94 E-value=47 Score=26.35 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=40.4
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhhHHHHHHHHHHcCC
Q 012234 144 AVISGLV---QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-----LKGGKEIHGYAVKNRY 205 (468)
Q Consensus 144 ~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 205 (468)
-+|+++. +-.+++.|+-++-+|++.| .|....-..++.+....|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3455554 4589999999999999999 7776666666666666554 2334444444455554
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.48 E-value=46 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=37.2
Q ss_pred HHHHHHHHHhh--CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 362 GKFVCDHLFEI--EPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 362 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
...+|..+... +...+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 55667777665 45566778888888888899999999888888877654
No 284
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=58.31 E-value=59 Score=26.00 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhhHHHHHHHHHHcCC
Q 012234 142 WNAVISGLV---QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-----LKGGKEIHGYAVKNRY 205 (468)
Q Consensus 142 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 205 (468)
+--+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+....|. +..|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334556554 458999999999999999988877776667666665553 2334444444445553
No 285
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=57.57 E-value=61 Score=25.66 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012234 144 AVISGLV---QNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188 (468)
Q Consensus 144 ~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 188 (468)
-+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3456554 45899999999999999998787766666666665555
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.54 E-value=34 Score=31.98 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH--hHH-HHHHHHHhccCChHHHHHHHHhC
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV--EHY-ACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
...++.+++.|...+.++.|..+..+..--..-.++. ..| ..+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3557777777777777888887777664100001111 112 23345566677777777776654
No 287
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.43 E-value=1.5e+02 Score=28.84 Aligned_cols=219 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 224 (468)
...++.-.|+++.|++++-.. ...+.+.+.+.+.-+.-.+- -..+..........-+..||..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~-- 366 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKS-- 366 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTT--
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHH--
Q ss_pred hHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHH--------
Q 012234 225 LHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAW-------- 295 (468)
Q Consensus 225 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~-------- 295 (468)
.+..+..+|+++|--+...+ ..-......++-......++++.-+
T Consensus 367 --------------------------F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~ 420 (661)
T 2qx5_A 367 --------------------------FRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGA 420 (661)
T ss_dssp --------------------------TTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSC
T ss_pred --------------------------hhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCC
Q ss_pred ---HHHHHhhhhcCCCCCHhHHHHHHH----HHhccCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCC--------
Q 012234 296 ---DIFNAMSGQYGIQPSVEHYACMVG----VLSRARRISEATEFVSKMPVKPS--AKVWGALLYGASISGD-------- 358 (468)
Q Consensus 296 ---~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~-------- 358 (468)
-++++.....++.........++. -+...|++++|+.+|.-.+ ..| ..+.+.++.-....-.
T Consensus 421 r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~ 499 (661)
T 2qx5_A 421 RIPGVIEERQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGP 499 (661)
T ss_dssp EECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCS
T ss_pred cCcchHHHhhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccc
Q ss_pred --------hHHHHHHHHH-------HHhhCCCCcchHHHHHHH-----HHHcCChHHHHHHHHHH
Q 012234 359 --------VELGKFVCDH-------LFEIEPENTGNYIIMANL-----YSQAGRWDEADRVREQM 403 (468)
Q Consensus 359 --------~~~a~~~~~~-------~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 403 (468)
...|.++.+. ..+..+.+..++..|.+. +.+.|+|++|++.++++
T Consensus 500 ~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 500 DDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp SCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.80 E-value=69 Score=24.17 Aligned_cols=50 Identities=6% Similarity=0.069 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 012234 158 VLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (468)
+..+|..|...|+-.. ...|......+...|++.+|..+|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666554333 2344555555566666666666666666655555
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.20 E-value=1.1e+02 Score=25.47 Aligned_cols=80 Identities=10% Similarity=-0.073 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHh-hccCCCcchHHHHHHH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG-FLHGAQRVFD-RFKGRSLIIWTAIISA 249 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~-~~~~~~~~~~~~l~~~ 249 (468)
++...-...+.++...|+.+ +...+..+.+ .++..+-...+.++...| ....+...+. .+..++..+-...+.+
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44444444455555555432 2222222222 233334444444444443 1122322222 2333444444444555
Q ss_pred HHHcCC
Q 012234 250 YAAHGD 255 (468)
Q Consensus 250 ~~~~g~ 255 (468)
+.+.|+
T Consensus 216 L~~~~~ 221 (280)
T 1oyz_A 216 LSYRKD 221 (280)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 555554
No 290
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.94 E-value=1.1e+02 Score=25.44 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=6.9
Q ss_pred CchhHHHHHHHHHHhcCC
Q 012234 207 RNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~ 224 (468)
++..+-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.77 E-value=75 Score=26.10 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
-+..+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677778888888888777653
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.47 E-value=90 Score=23.91 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCch
Q 012234 158 VLDLVREMQASGVRPNA-VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI 209 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 209 (468)
+..+|..|...|+-... ..|......+...|++.+|..+|..-++.+-.|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 55667777776654433 34556666667777777777777777776666643
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.41 E-value=96 Score=24.88 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=5.1
Q ss_pred CCChhHHHHHHH
Q 012234 19 GGFYEECKALFR 30 (468)
Q Consensus 19 ~g~~~~A~~~~~ 30 (468)
.|+.+-+..+++
T Consensus 19 ~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 19 QGNLPAVHRLVN 30 (241)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 344444444443
No 294
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=47.38 E-value=51 Score=25.20 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=49.0
Q ss_pred hhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhCCCH
Q 012234 22 YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES--HIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 22 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
.+.+++-+.+..++.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|--.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4566666666665777776543 355667777777778899999999887 7666766544456677777643
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.98 E-value=1e+02 Score=25.35 Aligned_cols=87 Identities=8% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNN--GIQP----DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 34555556666666666554321 1221 11111222222222222333344444442 1 3445555666777
Q ss_pred HhccCChHHHHHHHHhC
Q 012234 321 LSRARRISEATEFVSKM 337 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~ 337 (468)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77888888888777544
No 296
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.52 E-value=1.2e+02 Score=24.92 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=5.7
Q ss_pred ccCChHHHHHHHH
Q 012234 323 RARRISEATEFVS 335 (468)
Q Consensus 323 ~~~~~~~A~~~~~ 335 (468)
+.|+.+-+..+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444444
No 297
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=46.42 E-value=10 Score=25.43 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCCcCCcch
Q 012234 434 DKSEQIYLILERLLGLMREEGYVLLDEV 461 (468)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~g~~p~~~~ 461 (468)
++..+|+..+++....++.+|+.||-.+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 4456788889999999999999999654
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.36 E-value=1.7e+02 Score=30.14 Aligned_cols=86 Identities=2% Similarity=-0.177 Sum_probs=47.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CC-CC---------------
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VK-PS--------------- 342 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~--------------- 342 (468)
++..|...|.++-+..+.. -++.++..--.+..+|...|++++|...|+++. +. ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4555666666655443322 222333333356677788888888888888763 10 00
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 343 -------AKVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 343 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
..-|..++..+-..+-++.+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 113444555555566666666666655543
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.95 E-value=94 Score=23.42 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMKRPGL---STWNAVISGLVQNNR--HEAVLDLVREMQASGVRPN 173 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 173 (468)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4556666666666666666666654422 123334444444322 3456666666666654433
No 300
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.79 E-value=2.2e+02 Score=27.42 Aligned_cols=240 Identities=10% Similarity=-0.049 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012234 154 RHEAVLDLVREMQASGVRPNAVTISS----IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229 (468)
Q Consensus 154 ~~~~a~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 229 (468)
+.+.|...+....... ..+...... +.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5667777776665432 222222211 1222223332344444444433322 23333334444445667777777
Q ss_pred HHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 230 RVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 230 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
..|..+..... ...-=+..++...|+.++|..+|..+... .+ .|..+.. .+.|..-. +. ...
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~-------~~-~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE-------LK-IDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC-------CC-CCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC-------CC-CCC
Confidence 77777765321 11222334556677777777777776531 11 1222211 11121000 00 000
Q ss_pred CCCC-Hh-----HHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCc
Q 012234 307 IQPS-VE-----HYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP---ENT 377 (468)
Q Consensus 307 ~~p~-~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~ 377 (468)
+.+. .. .-..-+..+...|....|...+..+....+......+.......|..+.++....+....+. .-|
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 0010 00 11122445667788888887776653234444444555556677777777665544322210 112
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 411 (468)
..|..++.-+.+.-.++.++-.--...++++.|.
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 3455555556655555555444333445565543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.57 E-value=89 Score=24.20 Aligned_cols=80 Identities=11% Similarity=0.095 Sum_probs=37.8
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhCCCHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI--CNALIGMYAKCGSLD 94 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 94 (468)
+..|+.+....++..-. ..--..+...++.+ ...+..|+.+ +.+.+++.|..++... -.+.+...+..|+.+
T Consensus 13 ~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT-YQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHcCC-CCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 45677777776665432 11011222223333 3334555544 4444555565443221 112334445667777
Q ss_pred HHHHHHhh
Q 012234 95 YARALLDE 102 (468)
Q Consensus 95 ~A~~~~~~ 102 (468)
-+..+++.
T Consensus 87 ~~~~Ll~~ 94 (201)
T 3hra_A 87 ILAYMLKH 94 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 76666644
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.88 E-value=1.6e+02 Score=25.29 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhhhh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL--VDKAWDIFNAMSGQ 304 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 304 (468)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 455666677777777777777776421111 12233334444444322 34455666666544
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.40 E-value=96 Score=22.52 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMKRPGL---STWNAVISGLVQNNR--HEAVLDLVREMQASGVRPN 173 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 173 (468)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566667777777777777777655422 123344444444432 3556677777766664443
No 304
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=42.39 E-value=17 Score=22.31 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=19.9
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcc
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGV 43 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~ 43 (468)
.-+++.|...|.++.....+||+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578999999999875667887654
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.26 E-value=1.3e+02 Score=23.88 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=17.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
+..|.+.|.+++|.+++++.....+.+...-.-|..
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345666777777777777665555444443333333
No 306
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.97 E-value=21 Score=21.85 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCcchHHHHHHHh
Q 012234 22 YEECKALFREMLNSPVLRPDGVTVVSVLQAC 52 (468)
Q Consensus 22 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~ 52 (468)
.++|.+.|.+|+++.+| ++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 46888999999877775 5567788888777
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=40.45 E-value=1.2e+02 Score=28.39 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
...++.|...|.++....|.+...|+.|+-.....|+.-+|.-
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH
Confidence 3444555555555555555555555555555555554444443
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.53 E-value=3.3e+02 Score=27.93 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=32.5
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcC
Q 012234 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI----YVATAIIDTYAKTG 223 (468)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 223 (468)
-|.-++..+.+.+.++.+.++-+.+++.--..+. ..+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888888888888888888764333233 25566666666544
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.19 E-value=43 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.8
Q ss_pred CChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHH
Q 012234 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 223 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
...++|.++++.+..+++.+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.87 E-value=1.4e+02 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhh
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
.+..|.+.|.+++|.+++++...
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHhcchHHHHHHHHHHhc
Confidence 34567888888888888888874
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.81 E-value=1.9e+02 Score=25.99 Aligned_cols=295 Identities=13% Similarity=0.119 Sum_probs=130.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhCCCHHHHHHHHhhcCCCCee--hHHHHHHHHHhcC
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI--CNALIGMYAKCGSLDYARALLDEMSDKDEV--SYSAIISGYMVHG 122 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~ 122 (468)
+.+...+..|+.+-+.. +++.|..++... ..+.+...+..|+.+-+..+++.-...+.. .-.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 34444556677654444 445565554321 123455566778888888777754432211 1122344455677
Q ss_pred CHHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChhhHHHH
Q 012234 123 FVEKAMDLFQVMKRPGL---STWNAVISGLVQNNRHEAVLDLVREMQASGVRPN---AVTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 123 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
+.+-+.-+++.-..++. ...+. +...+..|+.+-+..+++ .+..++ .... ..+...+..|+.+-+
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v--- 162 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVA--- 162 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHH---
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHH---
Confidence 77777666665443322 22222 333445566665554443 332221 1111 123334455665443
Q ss_pred HHHHHHcCCCCchhH--HHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012234 197 HGYAVKNRYDRNIYV--ATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271 (468)
Q Consensus 197 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 271 (468)
+.+.+.|..++... -...+...+..|+.+-+..+++.-..++. .-++. +...+..|+.+-+ +.+.+.|.
T Consensus 163 -~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~ 236 (437)
T 1n11_A 163 -ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVA----RSLLQYGG 236 (437)
T ss_dssp -HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTC
T ss_pred -HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHHcCC
Confidence 34444454433211 11234445566776665555554333222 11222 2233455654433 33344444
Q ss_pred CCCHH---HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC---HhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCH
Q 012234 272 QPDPV---TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS---VEHYACMVGVLSRARRISEATEFVSKMP-V-KPSA 343 (468)
Q Consensus 272 ~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~ 343 (468)
.++.. ..+ .+...+..|..+-+..+++. +..++ ....+ .+...++.|+.+-+..+++.-. + ..+.
T Consensus 237 ~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 309 (437)
T 1n11_A 237 SANAESVQGVT-PLHLAAQEGHAEMVALLLSK-----QANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDATTR 309 (437)
T ss_dssp CTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTT-----TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTCCCS
T ss_pred CCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhc-----CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCCCCC
Confidence 33321 112 22233445665544433322 22222 11111 2233345566665555555421 1 1111
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
.-. +.+...+..|+.+-+..+++.
T Consensus 310 ~g~-t~L~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 310 MGY-TPLHVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp SCC-CHHHHHHHSSCSHHHHHHHHT
T ss_pred CCC-CHHHHHHHcCcHHHHHHHHhc
Confidence 111 123334556777665555544
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.96 E-value=1.3e+02 Score=25.17 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=45.4
Q ss_pred HHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH
Q 012234 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 397 (468)
+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+-+..+++.-...+..+..-....+....+.|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~---- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI---- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----
Confidence 3444556666666555555432222212233344556778888777777765555433322222211222334553
Q ss_pred HHHHHHHhCCCCCCC
Q 012234 398 RVREQMKESGLAKIP 412 (468)
Q Consensus 398 ~~~~~m~~~~~~~~~ 412 (468)
++.+.+.+.|..++.
T Consensus 209 ~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHTTSCBCSTT
T ss_pred HHHHHHHHcCCCCCC
Confidence 455556677766543
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.73 E-value=1.3e+02 Score=24.35 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhh--CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 360 ELGKFVCDHLFEI--EPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 360 ~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
+....+|..+... +...+..|...+..+...|++.+|.++|+.-++.+-+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3555666666554 3445566777777777777777777777776665544
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.15 E-value=1.1e+02 Score=24.27 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=5.6
Q ss_pred HhCCCHHHHHHHHh
Q 012234 88 AKCGSLDYARALLD 101 (468)
Q Consensus 88 ~~~g~~~~A~~~~~ 101 (468)
+..|+.+-+..+++
T Consensus 50 ~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 50 AINNRIDLVKYYIS 63 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444433333
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.18 E-value=1.3e+02 Score=22.26 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345667877776543 44555555666778888998888877666777766677777776643
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.11 E-value=1.3e+02 Score=27.16 Aligned_cols=359 Identities=13% Similarity=0.099 Sum_probs=173.3
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcc--hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHH
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGV--TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLW--ICNALIGMYA 88 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 88 (468)
+..-+..|+.+-+..+++. |..|+.. ...+.+...+..|+.+-+. .+++.|..++.. .-.+.+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT-----TCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHH
Confidence 3444566777666555543 3334422 1234445555677765444 445555444321 1123455666
Q ss_pred hCCCHHHHHHHHhhcCCCCee--hHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhCCChHHHHHHHH
Q 012234 89 KCGSLDYARALLDEMSDKDEV--SYSAIISGYMVHGFVEKAMDLFQVMKRP---GLSTWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
..|+.+-+.-+++.-..++.. .-.+.+...+..|+.+-...+++.-... +...++ .+...+..|+.+-+ +
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v----~ 163 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVA----E 163 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHH----H
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHH----H
Confidence 789998888888765443221 1122344556778888888888765432 222222 33445567776544 4
Q ss_pred HHHHCCCCCCHHH--HHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHH--HHHHHHHHhcCChHHHHHHHhhccCC-
Q 012234 164 EMQASGVRPNAVT--ISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA--TAIIDTYAKTGFLHGAQRVFDRFKGR- 238 (468)
Q Consensus 164 ~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~- 238 (468)
.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++.... ...+...+..|+.+-+..+++.-...
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 239 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 4455555444321 112233344556654 44455555554433211 12445567788888887777653332
Q ss_pred --CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH--
Q 012234 239 --SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP---VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-- 311 (468)
Q Consensus 239 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-- 311 (468)
+..-.+.+ ...+..|..+- ++.+.+.|..++. ...+ .+...+..|..+-+..+++. |..++.
T Consensus 240 ~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~ 308 (437)
T 1n11_A 240 AESVQGVTPL-HLAAQEGHAEM----VALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKH-----GVMVDATT 308 (437)
T ss_dssp CCCTTCCCHH-HHHHHTTCHHH----HHHHHTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHH-----TCCTTCCC
T ss_pred CCCCCCCCHH-HHHHHCCCHHH----HHHHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhC-----CccCCCCC
Confidence 22222233 23345666543 3444455554432 1122 23334456776655544443 333321
Q ss_pred -hHHHHHHHHHhccCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 312 -EHYACMVGVLSRARRISEATEFVSKMPVKP---SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 312 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
...+ .+...+..|+.+-+.-+++.- ..+ +..-++. +...+..|+.+-+..+++.-...+..+..-...+ ...
T Consensus 309 ~~g~t-~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~-L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l-~~A 384 (437)
T 1n11_A 309 RMGYT-PLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSP-LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL-AIA 384 (437)
T ss_dssp SSCCC-HHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHH-HHH
T ss_pred CCCCC-HHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCH-HHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHH-HHH
Confidence 1122 233445677777666666543 122 2112222 3334567777665555543222221122212222 222
Q ss_pred HHcCChHHHHHHHHHHHh
Q 012234 388 SQAGRWDEADRVREQMKE 405 (468)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~ 405 (468)
.+.|. .+..++++....
T Consensus 385 ~~~g~-~~~~~~l~~~~~ 401 (437)
T 1n11_A 385 KRLGY-ISVTDVLKVVTD 401 (437)
T ss_dssp HHTTC-HHHHHHHHHHCC
T ss_pred HHcCc-HHHHHHHHhccc
Confidence 33444 456666666543
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.20 E-value=1.4e+02 Score=22.29 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44566777766543 345556666667788999999998887777777777777777777643
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.91 E-value=1.4e+02 Score=22.38 Aligned_cols=62 Identities=11% Similarity=0.296 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 012234 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGD--ASKAVSLFNEMLNNGIQPD 274 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 274 (468)
..++.-|...|+.++|...++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4577777778888888888888765532 223333334433222 3456667777766654433
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.19 E-value=1.4e+02 Score=22.19 Aligned_cols=62 Identities=6% Similarity=0.226 Sum_probs=44.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677888776543 4455555555 6778999999999887777777777777788777754
No 320
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.07 E-value=1.3e+02 Score=22.30 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345567777776543 3444555555 678888999888877667777766677777776643
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.88 E-value=1.4e+02 Score=21.71 Aligned_cols=61 Identities=8% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 164 EMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 164 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35667877776543 4455555555 6778999999998887777777776677777776643
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.04 E-value=55 Score=26.94 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=45.8
Q ss_pred HHhcCCChhHHHHHHHHhhhCCCCCCCcc-------hHHHHHHHhh--ccCChHHHHHHHHHHHHhC---------CC-C
Q 012234 15 GYSQGGFYEECKALFREMLNSPVLRPDGV-------TVVSVLQACG--QSSDIVFGMEVHNFVIESH---------IK-M 75 (468)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~ 75 (468)
..++.|+.+....+++.+. ..+..++.. -.+.+..+.. +.|+.+-+..+++.-...+ +. .
T Consensus 11 ~A~~~g~~~~v~~ll~~l~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLL-THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHH-HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHhCCHHHHHHHHHHHH-hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 3456688888777777555 333333322 2344444432 5677776666666543311 00 0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 012234 76 DLWICNALIGMYAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (468)
|..- .+.+...+..|+.+-+.-+++.-..
T Consensus 90 d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 90 YYRG-QTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SEES-BCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccCC-CCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 0011 1234445566777777766665443
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.71 E-value=1.1e+02 Score=22.58 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
.+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 345566665543322 333333344455566677776654 334455555555556655554
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.38 E-value=2.1e+02 Score=23.20 Aligned_cols=53 Identities=6% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCc
Q 012234 156 EAVLDLVREMQASGVRPNA-VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 208 (468)
+.+..+|..|...||--.. ..|......+...|++.+|..+|..-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4566777777777654433 3566666677777778888877777777766663
No 325
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.81 E-value=1.5e+02 Score=21.42 Aligned_cols=62 Identities=11% Similarity=0.296 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 012234 213 TAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGD--ASKAVSLFNEMLNNGIQPD 274 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 274 (468)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4577778888888888888888765532 223333334443322 3456667777776665433
No 326
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.58 E-value=1.6e+02 Score=26.49 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=25.5
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+.-.|..++..|.+.+++.+|++.|-+.-+
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 455688999999999999999999877644
No 327
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.18 E-value=1.8e+02 Score=23.22 Aligned_cols=177 Identities=11% Similarity=0.046 Sum_probs=92.3
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhCCCHHHHHHHHhhcCCCCee--hHHHHHHHHHhcCCH
Q 012234 49 LQACGQSSDIVFGMEVHNFVIESHIKMDLW--ICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYSAIISGYMVHGFV 124 (468)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~ 124 (468)
+...+..|+.+.+..+++.+.+.+..++.. ...+.+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 444556788888887877766666544322 1123455566788888777777654443211 112234445567888
Q ss_pred HHHHHHHhhCC----C---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCChhhHH
Q 012234 125 EKAMDLFQVMK----R---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVT---ISSIFSLFSHFSNLKGGK 194 (468)
Q Consensus 125 ~~A~~~~~~~~----~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~ 194 (468)
+-...+++... . .+....+.+ ...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+.
T Consensus 93 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 93 TCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp HHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence 87777777654 1 122222222 2333445544 3444445554443211 122334445566665444
Q ss_pred HHHHHHHHcCCCCchhH--HHHHHHHHHhcCChHHHHHHHhh
Q 012234 195 EIHGYAVKNRYDRNIYV--ATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 195 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 168 ----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 168 ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp ----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred ----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 4445555543221 12244455667887777666664
No 328
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.09 E-value=1.3e+02 Score=25.28 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=82.9
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHH
Q 012234 50 QACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD---EVSYSAIISGYMVHGFVEK 126 (468)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 126 (468)
...+..|+.+-+.. +++.|..++...-.+.+...+..|+.+-+..+++.-..++ ..-++ .+...+..|+.+-
T Consensus 36 ~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~ 110 (285)
T 3kea_A 36 YYAIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQT 110 (285)
T ss_dssp HHHHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHH
Confidence 33445666654443 3444543333222344555667788777777776544332 11122 2334456677776
Q ss_pred HHHHHhhCCCCC---HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 127 AMDLFQVMKRPG---LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 127 A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
+.-+++.-..++ ...+...+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+..+++.-..
T Consensus 111 v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 666666533222 22222344445566665433 3344444333111 223334455567777766666655333
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
.... +..-.+..+...+..|+.+-+.-+++.
T Consensus 187 ~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 187 TNTN-NSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp TCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred CCcc-cCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 2211 111111123444556776655555554
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.95 E-value=2.4e+02 Score=24.56 Aligned_cols=144 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHh-cCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMV-HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (468)
..++.=|...|+.++|...++++..| .......+..++-+ ....+.+..++..+.+.+..+-..+..+ +.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~G------f~ 88 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQG------LY 88 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHH------HH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH------HH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 012234 157 AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL----KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 232 (468)
+..+.+..+.-. .|....+..-+-+.+-.... +-...+.+.+...| ........++..+.+....+.+..+|
T Consensus 89 ~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 89 EILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp HHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcCHHHHHHHH
Q ss_pred hh
Q 012234 233 DR 234 (468)
Q Consensus 233 ~~ 234 (468)
.+
T Consensus 165 ~~ 166 (339)
T 1ug3_A 165 RE 166 (339)
T ss_dssp HH
T ss_pred HH
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.49 E-value=2.8e+02 Score=25.50 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhh
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
.|..-.+.+...|++++|-++-..
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333334445555555555554443
No 331
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.39 E-value=1.3e+02 Score=19.40 Aligned_cols=62 Identities=5% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777777654 34555555554 5667788888888776666667777777777776643
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.22 E-value=99 Score=21.05 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=19.3
Q ss_pred CHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHH
Q 012234 92 SLDYARALLDEMSDKDEVSYSAIISGYMVHGFVE 125 (468)
Q Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 125 (468)
..+.|.++++.+..+.+.+|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4556666666666555555666665555444443
No 333
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.10 E-value=1.1e+02 Score=24.50 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHH--
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI-- 79 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 79 (468)
+..|....+.|.. .++.|+.+....+++.-. ... .++... .+.+...+..|+.+- ++.+++.|..++...
T Consensus 3 ~~~d~~~~~~l~~-A~~~g~~~~~~~Ll~~g~-~~~-~~~~~g-~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~ 74 (240)
T 3eu9_A 3 THIDDYSTWDIVK-ATQYGIYERCRELVEAGY-DVR-QPDKEN-VTLLHWAAINNRIDL----VKYYISKGAIVDQLGGD 74 (240)
T ss_dssp CCCSCGGGCCHHH-HHHTTCHHHHHHHHHTTC-CTT-CCCTTS-CCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTT
T ss_pred cccccccchHHHH-HHHcCChHHHHHHHHcCC-CcC-CCCCCC-CCHHHHHHHhCCHHH----HHHHHHcCCcchhhcCC
Confidence 3444444444554 456788776666665422 111 122222 234445566677654 444555554332111
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHhhcCCCCe---ehHHHHHHHHHhcCCHHHHHHHHhh
Q 012234 80 -CNALIGMYAKCGSLDYARALLDEMSDKDE---VSYSAIISGYMVHGFVEKAMDLFQV 133 (468)
Q Consensus 80 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~ 133 (468)
-.+.+...+..|+.+-+..+++.-..++. ..+ +.+...+..|+.+-+..+++.
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhc
Confidence 12344455567777777666664333221 111 122333445555554444443
No 334
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.51 E-value=1e+02 Score=20.83 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+...+..+.+.|+|++|++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 44555666667777777654443
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.51 E-value=2e+02 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=9.7
Q ss_pred HhccCCHHHHHHHHHHhh
Q 012234 285 CAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~ 302 (468)
....|+...+.++.+.+.
T Consensus 217 A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555555555555544
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.36 E-value=1.9e+02 Score=21.90 Aligned_cols=69 Identities=6% Similarity=0.128 Sum_probs=47.7
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCh
Q 012234 156 EAVLDLVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN--RYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 156 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 455687776643 45667777777888999999999887 6666776666677777777754
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.95 E-value=1.7e+02 Score=21.77 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|....+..+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 4445555443322 2333333444445566666666544 333444444445555555553
No 338
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.80 E-value=2.3e+02 Score=21.87 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=11.6
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHhC
Q 012234 314 YACMVGVLSRAR-RISEATEFVSKM 337 (468)
Q Consensus 314 ~~~l~~~~~~~~-~~~~A~~~~~~~ 337 (468)
...++..+.+.| .++.+..+++.+
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 344555555555 344444455444
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.71 E-value=2.6e+02 Score=22.49 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhCCCCchH-------HHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 012234 58 IVFGMEVHNFVIESHIKMDLW-------ICNALIGMYAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (468)
++.|+.+|+.+.+...-++.. +-...+..|.+.|.+++|.++|++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 355666666665543221111 111233445555666666666655544
No 340
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.64 E-value=1.9e+02 Score=26.13 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREE 453 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (468)
+.-.|..++..+.+.+++.+|++.+-+.-+- + ..+....+.++||.++.++...+...
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V-i-------------------~~YnY~reDeEiYke~~eIanelip~ 359 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTATV-I-------------------QDYNYCREDEEIYKEFFEVANDVIPN 359 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H-------------------TTSCCCTTCHHHHHHHHHHHHTHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhhhh-h-------------------hhcccccchHHHHHHHHHHHHHhhhH
Confidence 4556888999999999999999999877431 0 01111234567887776665555443
No 341
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.40 E-value=3.5e+02 Score=23.84 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC--eehHHHHHHHHHhcCC--HHHHHHHHhhCC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDKD--EVSYSAIISGYMVHGF--VEKAMDLFQVMK 135 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~--~~~A~~~~~~~~ 135 (468)
...++.=|...|+.++|...++++..|. ......++..-...++ -+.+..++..+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 3456777777888888888888887654 2223333333222222 233556666655
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.24 E-value=2.2e+02 Score=21.80 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=6.0
Q ss_pred HhcCChHHHHHHHh
Q 012234 220 AKTGFLHGAQRVFD 233 (468)
Q Consensus 220 ~~~g~~~~a~~~~~ 233 (468)
+..|+.+-+..+++
T Consensus 114 ~~~~~~~~v~~Ll~ 127 (201)
T 3hra_A 114 AEKGHIDNVKLLLE 127 (201)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444444443
No 343
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.90 E-value=2.3e+02 Score=21.56 Aligned_cols=30 Identities=0% Similarity=-0.147 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHhCCCC--chHHHHHHHH
Q 012234 56 SDIVFGMEVHNFVIESHIKM--DLWICNALIG 85 (468)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 85 (468)
|++-+|.++++..-.....+ ....|..||.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ 77 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQ 77 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 55555555555554443333 3334444444
No 344
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=24.33 E-value=1.9e+02 Score=28.09 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 328 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
+.|.++.+-|+ ...............|++.-|.++.+.++..+|+|..+...++++|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 233334445666789999999999999999999999998888988887763
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.76 E-value=1.4e+02 Score=21.94 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=31.1
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 46 VSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 46 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
..++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555666666667788888888877766666655555666666664
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.44 E-value=1.4e+02 Score=21.62 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666666554445555444444444433
No 347
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.92 E-value=2.8e+02 Score=21.84 Aligned_cols=83 Identities=10% Similarity=0.015 Sum_probs=39.9
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCC---cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--------chHHHH
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPD---GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM--------DLWICN 81 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~ 81 (468)
+..-++.|+.+.+..+++.- |..++ ..-++. +...+..|+.+-+..++ +.|..+ +..- .
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~----g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~~g-~ 76 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFE----GCEVHQRGAMGETA-LHIAALYDNLEAAMVLM----EAAPELVFEPMTSELYEG-Q 76 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTT----CSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HHCGGGGGCCCCSTTTTT-C
T ss_pred HHHHHHcCCHHHHHHHHHhc----CCCcccCCCCCCCH-HHHHHHcCCHHHHHHHH----HcCchhccccccccCCCC-c
Confidence 33445667776666555431 22222 222333 33444566665554444 333221 1111 2
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~ 105 (468)
+.+...+..|+.+-+..+++.-..
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~ 100 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGAS 100 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 234445567777777777665443
No 348
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.90 E-value=1.8e+02 Score=23.94 Aligned_cols=99 Identities=8% Similarity=-0.013 Sum_probs=52.0
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCC-------CcchHHHHHHHhh--ccCChHHHHHHHHHHHHhC--
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP-------DGVTVVSVLQACG--QSSDIVFGMEVHNFVIESH-- 72 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~-- 72 (468)
+|..-.+.|..+ ++.|+.+.+..+++... ..+... +..-++.|..++. +.|+.+-+..+++.-...+
T Consensus 9 ~d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 9 PRLYDRRSIFDA-VAQSNCQELESLLPFLQ-RSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp --CCCHHHHHHH-HHTTCSSTTTTHHHHHH-HSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCcccchHHHHH-HHcCCHHHHHHHHHHHh-hcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 445555555555 56788888888887654 222111 3334455555553 3577776666666533211
Q ss_pred -------CC-CchHHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 012234 73 -------IK-MDLWICNALIGMYAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 73 -------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (468)
.. .|..-. +.+...+..|+.+-+.-+++.-..
T Consensus 87 ~~~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp HHHHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCCC
Confidence 00 111122 233444567777777777765443
No 349
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=22.00 E-value=34 Score=16.82 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHHHHHHHc
Q 012234 435 KSEQIYLILERLLGLMREE 453 (468)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ 453 (468)
.++++.+++..+.+++++.
T Consensus 2 ~~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHHTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566778888999998865
No 350
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.99 E-value=2.9e+02 Score=21.69 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLW--ICNALIGMYAKC 90 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 90 (468)
+...++.|+.+....++..-. ...-.++....+.+. ..+..|+.+ +++.+++.|..++.. .-.+.+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADK-SLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 444556677777777776533 111112222223333 333445543 334444555443321 111223334455
Q ss_pred CCHHHHHHHHhh
Q 012234 91 GSLDYARALLDE 102 (468)
Q Consensus 91 g~~~~A~~~~~~ 102 (468)
|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 666655555554
No 351
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.33 E-value=1.4e+02 Score=18.13 Aligned_cols=15 Identities=33% Similarity=0.217 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHhhcC
Q 012234 90 CGSLDYARALLDEMS 104 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~ 104 (468)
.|+++.|...+-+|.
T Consensus 36 ~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 36 RGNKDAAINSLLQMG 50 (59)
T ss_dssp TTCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHcCc
Confidence 344444444444443
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.27 E-value=1.5e+02 Score=21.44 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=28.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
.++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444455566777777777777666666554455666666653
No 353
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.88 E-value=4.3e+02 Score=23.28 Aligned_cols=26 Identities=4% Similarity=-0.088 Sum_probs=16.2
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 176 TISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
....++.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34556666666677766666666653
No 354
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.82 E-value=2e+02 Score=21.27 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC
Q 012234 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 325 (468)
.-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKT-ASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCC
Confidence 34555566655543 33334444444444554444
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.58 E-value=1.7e+02 Score=21.40 Aligned_cols=47 Identities=9% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555556566677888888887777666666666667777766643
No 356
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.53 E-value=4.1e+02 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhh
Q 012234 9 WNSMIAGYSQGGFYEECKALFREML 33 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~ 33 (468)
...+|.-|-..|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567888888899999999999875
No 357
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.45 E-value=68 Score=26.34 Aligned_cols=54 Identities=15% Similarity=-0.024 Sum_probs=33.5
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchHH-------HHHHHHHHH--hCCCHHHHHHHHhh
Q 012234 49 LQACGQSSDIVFGMEVHNFVIESHIKMDLWI-------CNALIGMYA--KCGSLDYARALLDE 102 (468)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~ 102 (468)
+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445577888888888888877776555332 233333322 56777777666664
No 358
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=20.26 E-value=1.4e+02 Score=17.90 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=1.2
Q ss_pred HhCCCHHHH
Q 012234 88 AKCGSLDYA 96 (468)
Q Consensus 88 ~~~g~~~~A 96 (468)
...|++++|
T Consensus 51 mNrG~Yq~A 59 (61)
T 3ph0_C 51 MNQGDYQRA 59 (61)
T ss_dssp HHC------
T ss_pred HccchHhHh
Confidence 334444433
Done!