BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012235
         (467 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q87|B Chain B, Structure Of Eukaryotic Translation Termination Complex
           Methyltransferase Mtq2-Trm112
          Length = 170

 Score = 32.0 bits (71), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGA 351
           + + D L  +  E +I LD G  TG    ++R++N T+VST LN+ A
Sbjct: 11  YTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRA 56


>pdb|2ZOC|A Chain A, Crystal Structure Of Recombinant Human Annexin Iv
 pdb|2ZOC|B Chain B, Crystal Structure Of Recombinant Human Annexin Iv
          Length = 319

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 77  NRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIRPLYSAHIALRQIRLPKA 136
           N ME  Q  L K ++ L  ++DA+   I+ L Y+N  + + IR  Y + I    I   K+
Sbjct: 15  NAMEDAQ-TLRKAMKGLGTDEDAI---ISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKS 70

Query: 137 EGIGNF 142
           E  GNF
Sbjct: 71  ELSGNF 76


>pdb|1APS|A Chain A, Three-Dimensional Structure Of Acylphosphatase. Refinement
           And Structure Analysis
          Length = 98

 Score = 28.9 bits (63), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 74  EVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNF 112
           E +N M+S   K+     ++++   + +KTI++LEY NF
Sbjct: 56  EKVNSMKSWLSKVGSPSSRIDRTNFSNEKTISKLEYSNF 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,611,357
Number of Sequences: 62578
Number of extensions: 558225
Number of successful extensions: 1270
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 9
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)