Query 012235
Match_columns 467
No_of_seqs 536 out of 2290
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 00:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 5.8E-34 1.3E-38 297.6 10.6 236 206-466 4-264 (506)
2 PF03141 Methyltransf_29: Puta 99.8 1.2E-20 2.6E-25 198.0 13.5 223 180-446 258-486 (506)
3 PRK11088 rrmA 23S rRNA methylt 99.8 7.2E-20 1.6E-24 182.0 12.0 170 206-421 4-183 (272)
4 COG2226 UbiE Methylase involve 99.7 6.8E-17 1.5E-21 157.9 14.9 108 310-424 46-161 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 1.1E-16 2.4E-21 156.5 10.9 112 307-425 39-159 (233)
6 PF08241 Methyltransf_11: Meth 99.6 7.7E-16 1.7E-20 126.0 9.2 91 322-417 1-95 (95)
7 PLN02233 ubiquinone biosynthes 99.6 5.3E-15 1.2E-19 146.6 16.6 131 309-446 67-248 (261)
8 PTZ00098 phosphoethanolamine N 99.6 4.2E-14 9.1E-19 140.4 16.0 136 306-446 43-202 (263)
9 PLN02244 tocopherol O-methyltr 99.6 3.5E-14 7.6E-19 146.0 15.7 122 319-445 120-277 (340)
10 PLN02396 hexaprenyldihydroxybe 99.5 7.8E-14 1.7E-18 142.4 13.6 120 320-444 134-287 (322)
11 PRK10258 biotin biosynthesis p 99.5 7.4E-14 1.6E-18 136.7 12.5 99 319-422 44-143 (251)
12 PF13489 Methyltransf_23: Meth 99.5 1.2E-13 2.6E-18 124.2 12.9 127 305-442 11-159 (161)
13 PRK11036 putative S-adenosyl-L 99.5 1.3E-13 2.8E-18 135.8 13.9 122 319-445 46-206 (255)
14 PRK14103 trans-aconitate 2-met 99.5 2.1E-13 4.5E-18 134.2 15.2 129 309-446 23-184 (255)
15 TIGR02752 MenG_heptapren 2-hep 99.5 4.4E-13 9.6E-18 129.3 15.2 134 308-448 38-220 (231)
16 PRK11207 tellurite resistance 99.5 2.6E-13 5.7E-18 129.0 13.4 110 305-420 20-135 (197)
17 PRK15068 tRNA mo(5)U34 methylt 99.5 3.7E-13 8.1E-18 137.5 15.3 123 320-448 125-276 (322)
18 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.4E-12 2.9E-17 134.1 16.9 124 320-448 116-258 (340)
19 PLN02336 phosphoethanolamine N 99.5 7.3E-13 1.6E-17 141.4 15.5 129 310-445 261-413 (475)
20 KOG1540 Ubiquinone biosynthesi 99.5 6.9E-13 1.5E-17 129.3 13.7 105 315-424 98-219 (296)
21 TIGR00452 methyltransferase, p 99.5 9.4E-13 2E-17 134.1 15.3 130 312-449 118-276 (314)
22 PF12847 Methyltransf_18: Meth 99.5 4E-13 8.6E-18 114.5 10.0 97 320-419 4-111 (112)
23 PRK11873 arsM arsenite S-adeno 99.4 1.9E-12 4E-17 128.4 15.3 129 311-446 73-230 (272)
24 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.7E-13 5.8E-18 131.7 8.5 99 320-423 62-165 (243)
25 TIGR00477 tehB tellurite resis 99.4 1.4E-12 3E-17 123.9 12.9 132 306-445 21-168 (195)
26 PF05401 NodS: Nodulation prot 99.4 7.1E-12 1.5E-16 118.8 16.1 151 312-466 38-200 (201)
27 PF02353 CMAS: Mycolic acid cy 99.4 2.8E-12 6.1E-17 128.2 13.1 132 307-446 54-217 (273)
28 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.4E-12 5.3E-17 126.4 12.4 100 320-424 59-169 (247)
29 PRK12335 tellurite resistance 99.4 8.1E-12 1.8E-16 125.4 16.1 120 320-445 123-258 (287)
30 PF13649 Methyltransf_25: Meth 99.4 1.1E-12 2.3E-17 111.0 7.5 90 321-413 1-101 (101)
31 PRK05785 hypothetical protein; 99.4 2.8E-12 6.1E-17 124.7 11.4 86 320-412 54-140 (226)
32 PRK00216 ubiE ubiquinone/menaq 99.4 3.1E-11 6.7E-16 115.8 17.8 106 310-422 46-161 (239)
33 TIGR00740 methyltransferase, p 99.4 6.9E-12 1.5E-16 122.1 13.5 99 320-423 56-165 (239)
34 smart00828 PKS_MT Methyltransf 99.4 1E-11 2.2E-16 119.2 13.6 121 320-446 2-144 (224)
35 PF13847 Methyltransf_31: Meth 99.3 4.8E-12 1E-16 114.7 10.3 96 320-421 6-112 (152)
36 PRK08317 hypothetical protein; 99.3 2.3E-11 5E-16 116.1 15.3 105 309-420 13-125 (241)
37 PRK01683 trans-aconitate 2-met 99.3 7.8E-12 1.7E-16 122.8 11.9 103 309-419 25-130 (258)
38 PF03848 TehB: Tellurite resis 99.3 1.1E-11 2.5E-16 117.7 12.2 110 307-422 22-136 (192)
39 TIGR02072 BioC biotin biosynth 99.3 2.8E-11 6.1E-16 115.8 14.5 99 319-422 36-138 (240)
40 KOG1541 Predicted protein carb 99.3 1.8E-11 4E-16 117.2 12.9 139 308-449 41-193 (270)
41 TIGR03587 Pse_Me-ase pseudamin 99.3 2.5E-11 5.5E-16 116.4 13.2 97 320-422 46-145 (204)
42 PLN02336 phosphoethanolamine N 99.3 1.2E-11 2.6E-16 132.1 12.2 131 307-442 29-178 (475)
43 PRK11188 rrmJ 23S rRNA methylt 99.3 5.5E-11 1.2E-15 114.4 15.2 140 307-459 42-205 (209)
44 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 6.1E-11 1.3E-15 112.6 15.2 98 320-422 42-146 (223)
45 COG2230 Cfa Cyclopropane fatty 99.3 3.8E-11 8.2E-16 120.0 13.6 110 307-424 64-181 (283)
46 PF08003 Methyltransf_9: Prote 99.3 4.5E-11 9.8E-16 120.0 13.9 125 319-449 117-270 (315)
47 TIGR00537 hemK_rel_arch HemK-r 99.3 1.6E-10 3.5E-15 107.8 16.4 130 306-443 10-162 (179)
48 PRK04266 fibrillarin; Provisio 99.3 2E-10 4.4E-15 111.9 16.4 129 311-449 68-213 (226)
49 PF05148 Methyltransf_8: Hypot 99.2 6.2E-11 1.3E-15 113.3 12.2 149 290-463 50-198 (219)
50 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.2E-10 2.6E-15 112.5 14.4 100 320-422 37-155 (213)
51 PRK06922 hypothetical protein; 99.2 6.1E-11 1.3E-15 129.7 12.8 110 309-422 412-540 (677)
52 PRK06202 hypothetical protein; 99.2 2.2E-10 4.8E-15 111.1 14.9 97 319-420 62-167 (232)
53 KOG1270 Methyltransferases [Co 99.2 1.5E-11 3.2E-16 120.6 6.7 96 319-422 91-198 (282)
54 PRK11705 cyclopropane fatty ac 99.2 8.6E-11 1.9E-15 122.9 12.7 107 307-421 159-269 (383)
55 TIGR02716 C20_methyl_CrtF C-20 99.2 2.7E-10 5.9E-15 115.1 15.4 108 307-422 141-257 (306)
56 TIGR02081 metW methionine bios 99.2 2.9E-10 6.3E-15 107.5 13.8 125 314-449 12-170 (194)
57 PRK00121 trmB tRNA (guanine-N( 99.2 8.6E-11 1.9E-15 112.2 10.0 116 319-439 42-174 (202)
58 smart00138 MeTrc Methyltransfe 99.2 9.8E-11 2.1E-15 116.6 10.1 98 319-419 101-242 (264)
59 PF08242 Methyltransf_12: Meth 99.2 6.3E-12 1.4E-16 105.5 1.1 89 322-415 1-99 (99)
60 TIGR02021 BchM-ChlM magnesium 99.2 2.6E-10 5.6E-15 109.6 12.4 121 319-445 57-205 (219)
61 TIGR00138 gidB 16S rRNA methyl 99.2 3E-10 6.4E-15 107.0 11.7 111 320-443 45-166 (181)
62 PRK00107 gidB 16S rRNA methylt 99.1 1.3E-09 2.9E-14 103.3 16.0 109 320-441 48-164 (187)
63 PRK14968 putative methyltransf 99.1 2.1E-09 4.6E-14 99.6 17.0 130 307-443 15-170 (188)
64 PRK13255 thiopurine S-methyltr 99.1 3.8E-10 8.2E-15 109.4 12.3 98 320-420 40-156 (218)
65 KOG2361 Predicted methyltransf 99.1 5.6E-10 1.2E-14 108.4 12.7 158 306-464 60-264 (264)
66 PRK05134 bifunctional 3-demeth 99.1 9.9E-10 2.1E-14 106.2 14.3 120 320-444 51-203 (233)
67 PRK13944 protein-L-isoaspartat 99.1 6.5E-10 1.4E-14 106.4 11.5 100 307-419 64-173 (205)
68 TIGR00438 rrmJ cell division p 99.1 2.1E-09 4.6E-14 101.0 14.7 136 312-459 29-186 (188)
69 KOG4300 Predicted methyltransf 99.1 3.4E-10 7.3E-15 107.7 9.2 100 320-424 79-187 (252)
70 COG4106 Tam Trans-aconitate me 99.1 5.7E-10 1.2E-14 106.9 10.7 101 318-424 31-134 (257)
71 PRK08287 cobalt-precorrin-6Y C 99.1 1.2E-09 2.6E-14 102.6 12.8 122 309-444 25-154 (187)
72 TIGR02469 CbiT precorrin-6Y C5 99.1 1.8E-09 4E-14 92.9 13.0 102 308-419 12-122 (124)
73 PF07021 MetW: Methionine bios 99.1 1.4E-09 3E-14 103.0 12.8 126 313-449 11-170 (193)
74 PRK00517 prmA ribosomal protei 99.1 1.4E-09 3.1E-14 107.1 13.6 125 320-463 122-250 (250)
75 PRK09489 rsmC 16S ribosomal RN 99.1 3.9E-09 8.5E-14 108.9 16.7 133 320-465 199-341 (342)
76 COG4976 Predicted methyltransf 99.1 1.9E-10 4.2E-15 110.9 6.4 144 299-447 106-266 (287)
77 PRK07580 Mg-protoporphyrin IX 99.1 2.7E-09 5.8E-14 102.5 14.1 121 320-446 66-214 (230)
78 PTZ00146 fibrillarin; Provisio 99.1 5.4E-09 1.2E-13 105.3 16.7 144 311-463 128-289 (293)
79 TIGR01177 conserved hypothetic 99.0 2.9E-09 6.3E-14 109.0 14.6 126 307-442 174-311 (329)
80 TIGR00080 pimt protein-L-isoas 99.0 1.1E-09 2.4E-14 105.3 10.6 100 306-418 68-176 (215)
81 PRK13942 protein-L-isoaspartat 99.0 1.4E-09 3.1E-14 104.6 11.3 99 307-418 68-175 (212)
82 PLN02232 ubiquinone biosynthes 99.0 1.2E-09 2.5E-14 100.7 10.1 75 346-423 2-85 (160)
83 TIGR03534 RF_mod_PrmC protein- 99.0 5.8E-09 1.3E-13 101.3 15.5 120 319-444 89-239 (251)
84 TIGR01983 UbiG ubiquinone bios 99.0 2.9E-09 6.2E-14 102.0 12.9 96 320-420 48-150 (224)
85 PF05175 MTS: Methyltransferas 99.0 2E-09 4.3E-14 100.0 11.1 108 306-419 22-140 (170)
86 KOG3045 Predicted RNA methylas 99.0 3.8E-09 8.2E-14 103.6 13.3 145 292-463 160-304 (325)
87 TIGR00091 tRNA (guanine-N(7)-) 99.0 5.6E-10 1.2E-14 105.8 7.3 97 320-419 19-132 (194)
88 PRK14967 putative methyltransf 99.0 1.6E-08 3.5E-13 97.8 17.4 121 313-440 34-178 (223)
89 COG4123 Predicted O-methyltran 99.0 6.8E-09 1.5E-13 102.2 14.8 138 318-460 45-212 (248)
90 PRK00377 cbiT cobalt-precorrin 99.0 6E-09 1.3E-13 99.0 13.6 126 309-446 34-172 (198)
91 PLN02585 magnesium protoporphy 99.0 5.9E-09 1.3E-13 106.4 13.6 131 320-460 147-310 (315)
92 TIGR00406 prmA ribosomal prote 99.0 9.6E-09 2.1E-13 103.4 14.0 110 320-442 162-279 (288)
93 COG2264 PrmA Ribosomal protein 98.9 1.9E-08 4.1E-13 101.6 15.7 145 301-462 146-299 (300)
94 PF13659 Methyltransf_26: Meth 98.9 2.2E-09 4.7E-14 92.2 7.4 99 320-420 3-116 (117)
95 PRK10901 16S rRNA methyltransf 98.9 3.4E-08 7.3E-13 104.8 17.9 154 305-462 234-426 (427)
96 PF06325 PrmA: Ribosomal prote 98.9 1.5E-08 3.2E-13 102.6 14.4 141 302-462 146-294 (295)
97 PRK14901 16S rRNA methyltransf 98.9 2.2E-08 4.7E-13 106.5 16.1 155 305-463 242-433 (434)
98 PRK14121 tRNA (guanine-N(7)-)- 98.9 4.3E-09 9.4E-14 109.8 10.5 97 320-419 125-235 (390)
99 PRK00312 pcm protein-L-isoaspa 98.9 1.1E-08 2.4E-13 97.8 11.9 101 307-420 70-176 (212)
100 PRK15001 SAM-dependent 23S rib 98.9 7.5E-09 1.6E-13 108.0 11.5 96 320-419 231-340 (378)
101 KOG3010 Methyltransferase [Gen 98.9 9.8E-09 2.1E-13 99.9 10.3 105 306-417 23-135 (261)
102 PRK13256 thiopurine S-methyltr 98.9 3E-08 6.6E-13 96.7 13.3 100 320-422 46-166 (226)
103 TIGR03533 L3_gln_methyl protei 98.9 6.4E-08 1.4E-12 97.4 16.0 127 319-455 123-280 (284)
104 PLN03075 nicotianamine synthas 98.9 3.3E-08 7.2E-13 99.9 13.6 98 319-420 125-234 (296)
105 PRK07402 precorrin-6B methylas 98.9 2.7E-08 5.9E-13 94.1 12.3 118 307-437 32-158 (196)
106 cd02440 AdoMet_MTases S-adenos 98.8 2.4E-08 5.2E-13 80.6 10.2 95 320-418 1-103 (107)
107 TIGR03438 probable methyltrans 98.8 2.3E-08 4.9E-13 101.3 12.2 98 320-420 66-178 (301)
108 PRK09328 N5-glutamine S-adenos 98.8 1.3E-07 2.9E-12 93.4 16.9 121 320-446 111-262 (275)
109 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.6E-07 3.4E-12 93.5 17.2 127 306-436 62-217 (264)
110 PRK14904 16S rRNA methyltransf 98.8 1E-07 2.2E-12 101.6 16.9 127 306-437 241-396 (445)
111 PRK14966 unknown domain/N5-glu 98.8 1.8E-07 4E-12 98.5 17.7 135 303-444 238-403 (423)
112 TIGR00563 rsmB ribosomal RNA s 98.8 1E-07 2.2E-12 101.1 15.9 130 304-437 227-387 (426)
113 PHA03411 putative methyltransf 98.8 7.2E-08 1.6E-12 96.4 13.5 118 320-440 67-208 (279)
114 PRK14902 16S rRNA methyltransf 98.8 1.6E-07 3.4E-12 100.1 16.8 155 305-463 240-443 (444)
115 PRK14903 16S rRNA methyltransf 98.8 1.8E-07 3.9E-12 99.5 16.8 128 305-436 227-384 (431)
116 PF06080 DUF938: Protein of un 98.8 1.1E-07 2.4E-12 91.2 13.4 138 320-462 28-204 (204)
117 KOG1271 Methyltransferases [Ge 98.8 2.6E-08 5.6E-13 93.4 8.8 122 320-444 70-203 (227)
118 PF00891 Methyltransf_2: O-met 98.8 2.8E-08 6.1E-13 96.9 9.5 102 317-425 100-205 (241)
119 smart00650 rADc Ribosomal RNA 98.8 4.6E-08 1E-12 90.5 10.1 104 308-419 6-113 (169)
120 PF05724 TPMT: Thiopurine S-me 98.8 1.2E-07 2.6E-12 92.0 13.4 129 311-445 33-189 (218)
121 PRK11805 N5-glutamine S-adenos 98.7 2.6E-07 5.7E-12 94.1 16.3 113 319-438 135-278 (307)
122 PF05219 DREV: DREV methyltran 98.7 1.3E-07 2.9E-12 93.3 13.5 124 318-449 95-243 (265)
123 KOG2940 Predicted methyltransf 98.7 1.1E-08 2.4E-13 98.8 5.3 122 289-418 39-173 (325)
124 TIGR00536 hemK_fam HemK family 98.7 3E-07 6.5E-12 92.3 15.5 119 320-444 117-267 (284)
125 PRK13943 protein-L-isoaspartat 98.7 8.7E-08 1.9E-12 98.2 11.1 100 307-419 72-180 (322)
126 PRK04457 spermidine synthase; 98.7 3.5E-07 7.6E-12 91.1 14.5 119 319-441 68-197 (262)
127 COG2813 RsmC 16S RNA G1207 met 98.7 2.5E-07 5.4E-12 93.2 13.4 125 307-443 150-284 (300)
128 COG2518 Pcm Protein-L-isoaspar 98.7 7.9E-08 1.7E-12 92.3 9.3 102 305-419 62-169 (209)
129 PF01135 PCMT: Protein-L-isoas 98.7 4.4E-08 9.5E-13 94.6 7.3 99 306-417 63-170 (209)
130 PRK01544 bifunctional N5-gluta 98.6 3.7E-07 7.9E-12 99.0 14.6 119 320-444 141-291 (506)
131 TIGR03704 PrmC_rel_meth putati 98.6 2.9E-07 6.2E-12 91.1 12.2 117 320-441 89-235 (251)
132 COG2242 CobL Precorrin-6B meth 98.6 1.3E-06 2.9E-11 82.4 16.0 126 306-444 25-159 (187)
133 PF03291 Pox_MCEL: mRNA cappin 98.6 1.5E-07 3.3E-12 96.7 8.6 100 319-420 64-187 (331)
134 COG2890 HemK Methylase of poly 98.5 2.4E-06 5.2E-11 86.0 16.3 113 320-439 113-255 (280)
135 PRK00811 spermidine synthase; 98.5 8.8E-07 1.9E-11 89.2 12.4 117 318-437 77-211 (283)
136 PF05891 Methyltransf_PK: AdoM 98.5 2.4E-06 5.2E-11 82.6 13.3 128 318-448 56-203 (218)
137 PRK13168 rumA 23S rRNA m(5)U19 98.5 3.2E-06 6.9E-11 90.2 15.2 138 310-462 292-442 (443)
138 PF01728 FtsJ: FtsJ-like methy 98.4 1.1E-06 2.4E-11 81.9 10.0 141 308-458 13-178 (181)
139 PHA03412 putative methyltransf 98.4 1.3E-06 2.9E-11 85.7 10.4 94 320-417 52-160 (241)
140 PRK01581 speE spermidine synth 98.4 3.6E-06 7.7E-11 87.4 14.1 128 318-447 151-298 (374)
141 COG2521 Predicted archaeal met 98.4 9.9E-07 2.1E-11 85.8 8.6 128 313-444 132-275 (287)
142 PRK03612 spermidine synthase; 98.4 2.4E-06 5.2E-11 93.0 12.4 118 319-439 299-437 (521)
143 PF02390 Methyltransf_4: Putat 98.4 1.7E-06 3.6E-11 82.7 9.3 97 320-419 20-133 (195)
144 COG2519 GCD14 tRNA(1-methylade 98.3 4.2E-06 9.1E-11 82.4 11.5 122 306-442 85-216 (256)
145 PLN02781 Probable caffeoyl-CoA 98.3 2.7E-06 5.8E-11 83.4 10.0 106 307-422 60-181 (234)
146 KOG1975 mRNA cap methyltransfe 98.3 1E-06 2.2E-11 89.1 7.1 97 320-419 120-237 (389)
147 TIGR00417 speE spermidine synt 98.3 6E-06 1.3E-10 82.4 12.2 98 318-418 73-185 (270)
148 PRK11783 rlmL 23S rRNA m(2)G24 98.3 3.4E-06 7.4E-11 94.9 11.6 123 313-442 536-676 (702)
149 PRK03522 rumB 23S rRNA methylu 98.3 9.3E-06 2E-10 82.8 13.5 91 320-418 176-273 (315)
150 PF01739 CheR: CheR methyltran 98.3 5.1E-06 1.1E-10 79.5 10.7 99 317-418 31-174 (196)
151 PRK15128 23S rRNA m(5)C1962 me 98.3 7.8E-06 1.7E-10 86.2 12.3 113 320-436 223-355 (396)
152 TIGR00479 rumA 23S rRNA (uraci 98.2 8.6E-06 1.9E-10 86.4 12.3 121 310-443 287-417 (431)
153 KOG1499 Protein arginine N-met 98.2 2.6E-06 5.6E-11 87.2 7.1 98 319-416 62-164 (346)
154 PLN02366 spermidine synthase 98.2 1.3E-05 2.7E-10 81.9 11.8 123 318-444 92-233 (308)
155 PRK14896 ksgA 16S ribosomal RN 98.2 1.1E-05 2.4E-10 80.0 10.8 80 307-393 21-104 (258)
156 PRK10611 chemotaxis methyltran 98.2 7.4E-06 1.6E-10 82.8 9.6 97 320-419 118-262 (287)
157 PF08704 GCD14: tRNA methyltra 98.2 8.3E-06 1.8E-10 80.8 9.6 124 306-443 31-168 (247)
158 TIGR00478 tly hemolysin TlyA f 98.2 7.7E-06 1.7E-10 80.1 8.9 84 320-417 78-169 (228)
159 TIGR00755 ksgA dimethyladenosi 98.2 1.1E-05 2.4E-10 79.6 10.1 78 309-393 23-107 (253)
160 KOG3191 Predicted N6-DNA-methy 98.1 8.2E-05 1.8E-09 70.1 15.1 122 318-442 44-189 (209)
161 KOG1331 Predicted methyltransf 98.1 2.2E-06 4.7E-11 85.5 4.9 110 307-422 36-146 (293)
162 PRK00274 ksgA 16S ribosomal RN 98.1 5.3E-06 1.1E-10 83.0 7.6 79 307-389 34-115 (272)
163 COG0500 SmtA SAM-dependent met 98.1 2.6E-05 5.7E-10 64.7 10.4 97 321-423 52-159 (257)
164 COG0220 Predicted S-adenosylme 98.1 1.1E-05 2.3E-10 79.0 9.1 99 320-419 51-164 (227)
165 PLN02672 methionine S-methyltr 98.1 1.4E-05 2.9E-10 93.1 11.0 123 320-447 121-305 (1082)
166 KOG2899 Predicted methyltransf 98.1 2.7E-05 5.7E-10 76.3 11.0 96 319-417 60-207 (288)
167 COG1041 Predicted DNA modifica 98.1 4.1E-05 9E-10 78.7 12.3 126 307-443 189-327 (347)
168 TIGR02085 meth_trns_rumB 23S r 98.0 4.7E-05 1E-09 79.6 12.8 91 320-418 236-333 (374)
169 PRK10909 rsmD 16S rRNA m(2)G96 98.0 3.5E-05 7.6E-10 73.9 10.7 95 320-420 56-160 (199)
170 PF05185 PRMT5: PRMT5 arginine 98.0 1.5E-05 3.3E-10 85.2 8.7 94 319-416 188-294 (448)
171 PF10294 Methyltransf_16: Puta 98.0 3.5E-05 7.6E-10 72.0 9.9 113 319-435 47-171 (173)
172 COG0293 FtsJ 23S rRNA methylas 98.0 8.9E-05 1.9E-09 71.3 12.7 136 313-460 43-200 (205)
173 PLN02476 O-methyltransferase 98.0 5.6E-05 1.2E-09 76.1 11.3 108 307-424 110-233 (278)
174 PRK11933 yebU rRNA (cytosine-C 97.9 0.00025 5.5E-09 76.4 15.6 127 307-437 103-261 (470)
175 PTZ00338 dimethyladenosine tra 97.9 5.8E-05 1.3E-09 76.6 9.9 82 307-395 28-116 (294)
176 KOG1661 Protein-L-isoaspartate 97.9 4.6E-05 9.9E-10 73.3 8.4 97 308-417 73-191 (237)
177 PRK11727 23S rRNA mA1618 methy 97.9 0.00027 5.9E-09 72.6 14.6 121 319-442 116-288 (321)
178 PRK04148 hypothetical protein; 97.9 0.00012 2.5E-09 66.1 10.5 93 319-422 18-112 (134)
179 COG4122 Predicted O-methyltran 97.9 7.4E-05 1.6E-09 72.7 9.9 109 306-424 50-171 (219)
180 PF01596 Methyltransf_3: O-met 97.9 3.7E-05 7.9E-10 74.2 7.5 97 319-423 47-159 (205)
181 COG3963 Phospholipid N-methylt 97.9 0.00012 2.7E-09 68.2 10.3 101 319-422 50-159 (194)
182 PF11968 DUF3321: Putative met 97.8 0.00012 2.7E-09 70.8 9.9 118 320-449 54-184 (219)
183 KOG2904 Predicted methyltransf 97.8 0.00048 1E-08 68.8 13.9 103 320-422 151-288 (328)
184 COG1352 CheR Methylase of chem 97.8 0.00026 5.7E-09 70.9 12.0 107 309-418 88-240 (268)
185 KOG1269 SAM-dependent methyltr 97.8 5.6E-05 1.2E-09 78.8 7.4 101 312-419 107-215 (364)
186 PF12147 Methyltransf_20: Puta 97.7 0.00099 2.1E-08 67.2 15.6 127 317-445 135-297 (311)
187 PRK01544 bifunctional N5-gluta 97.7 6.5E-05 1.4E-09 81.7 7.6 99 318-419 348-462 (506)
188 KOG3178 Hydroxyindole-O-methyl 97.7 0.00025 5.4E-09 72.9 11.3 100 318-423 178-279 (342)
189 COG2263 Predicted RNA methylas 97.7 0.00015 3.2E-09 68.9 8.6 115 320-446 48-169 (198)
190 PF01170 UPF0020: Putative RNA 97.7 0.00014 3.1E-09 68.4 8.3 128 306-444 19-169 (179)
191 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 0.00043 9.3E-09 69.0 11.7 82 365-446 138-239 (256)
192 COG0030 KsgA Dimethyladenosine 97.6 0.00034 7.4E-09 69.7 9.8 98 291-395 8-110 (259)
193 PRK11760 putative 23S rRNA C24 97.6 0.00078 1.7E-08 69.5 12.5 103 314-428 210-314 (357)
194 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00029 6.3E-09 69.8 8.6 107 307-423 71-194 (247)
195 PRK05031 tRNA (uracil-5-)-meth 97.5 0.0011 2.4E-08 69.1 13.2 89 320-418 209-319 (362)
196 PLN02823 spermine synthase 97.5 0.0016 3.5E-08 67.4 13.5 98 318-418 104-219 (336)
197 PF07942 N2227: N2227-like pro 97.5 0.0013 2.8E-08 66.0 12.3 123 319-446 58-242 (270)
198 TIGR00095 RNA methyltransferas 97.4 0.0011 2.3E-08 63.0 10.4 94 320-419 52-159 (189)
199 PRK00536 speE spermidine synth 97.4 0.0012 2.7E-08 65.9 11.1 110 317-440 72-193 (262)
200 TIGR02143 trmA_only tRNA (urac 97.4 0.0024 5.1E-08 66.5 13.4 88 320-417 200-309 (353)
201 PF02475 Met_10: Met-10+ like- 97.4 0.00033 7.1E-09 67.4 6.0 92 313-416 99-199 (200)
202 COG0144 Sun tRNA and rRNA cyto 97.4 0.0067 1.5E-07 63.2 16.1 129 305-437 146-307 (355)
203 KOG4589 Cell division protein 97.3 0.0019 4.1E-08 61.4 9.8 140 313-464 67-229 (232)
204 KOG1500 Protein arginine N-met 97.3 0.00084 1.8E-08 68.7 8.0 116 319-439 179-305 (517)
205 PF02527 GidB: rRNA small subu 97.3 0.0014 3.1E-08 62.1 9.1 112 320-441 51-170 (184)
206 PF01269 Fibrillarin: Fibrilla 97.2 0.0089 1.9E-07 58.4 14.2 162 291-462 47-229 (229)
207 PRK04338 N(2),N(2)-dimethylgua 97.1 0.0013 2.8E-08 69.3 8.2 90 320-418 60-157 (382)
208 COG2520 Predicted methyltransf 97.1 0.0059 1.3E-07 63.3 12.8 125 314-449 187-325 (341)
209 KOG1663 O-methyltransferase [S 97.1 0.0022 4.8E-08 62.6 8.9 111 306-424 64-188 (237)
210 COG1092 Predicted SAM-dependen 97.1 0.0037 8.1E-08 65.9 11.1 106 315-424 217-341 (393)
211 PF09243 Rsm22: Mitochondrial 97.1 0.0037 8E-08 62.8 10.5 115 318-439 34-161 (274)
212 KOG0820 Ribosomal RNA adenine 97.1 0.002 4.2E-08 64.5 8.0 75 309-389 52-133 (315)
213 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0031 6.7E-08 63.8 9.5 127 306-436 37-203 (311)
214 KOG3987 Uncharacterized conser 97.0 0.00045 9.7E-09 66.5 3.1 124 318-449 113-263 (288)
215 PF01564 Spermine_synth: Sperm 97.0 0.0073 1.6E-07 59.8 11.6 142 318-462 77-237 (246)
216 KOG2352 Predicted spermine/spe 97.0 0.0035 7.5E-08 67.1 9.4 100 320-421 51-163 (482)
217 PRK00050 16S rRNA m(4)C1402 me 96.9 0.002 4.4E-08 65.5 7.0 79 307-389 11-100 (296)
218 COG4798 Predicted methyltransf 96.9 0.0073 1.6E-07 57.8 9.6 128 308-441 41-200 (238)
219 COG1189 Predicted rRNA methyla 96.8 0.016 3.4E-07 57.1 12.0 119 290-418 54-177 (245)
220 PF10672 Methyltrans_SAM: S-ad 96.8 0.0059 1.3E-07 61.9 9.4 125 320-447 126-267 (286)
221 COG0421 SpeE Spermidine syntha 96.8 0.0092 2E-07 60.4 10.6 100 316-418 75-189 (282)
222 COG0357 GidB Predicted S-adeno 96.7 0.022 4.8E-07 55.5 11.9 119 319-444 69-193 (215)
223 PF00398 RrnaAD: Ribosomal RNA 96.6 0.0089 1.9E-07 59.5 8.8 101 307-417 22-132 (262)
224 PF08123 DOT1: Histone methyla 96.6 0.0057 1.2E-07 59.1 6.8 110 307-424 34-163 (205)
225 TIGR03439 methyl_EasF probable 96.5 0.025 5.4E-07 58.2 11.4 99 320-419 79-197 (319)
226 PF03602 Cons_hypoth95: Conser 96.4 0.0072 1.6E-07 57.2 6.5 96 320-420 45-154 (183)
227 PF04816 DUF633: Family of unk 96.4 0.1 2.2E-06 50.4 14.5 130 321-461 1-138 (205)
228 COG2265 TrmA SAM-dependent met 96.4 0.02 4.3E-07 61.3 10.3 119 309-440 287-414 (432)
229 KOG2915 tRNA(1-methyladenosine 96.4 0.035 7.6E-07 55.7 11.2 128 306-444 96-233 (314)
230 PF05958 tRNA_U5-meth_tr: tRNA 96.4 0.036 7.9E-07 57.7 11.9 128 320-462 199-351 (352)
231 KOG3420 Predicted RNA methylas 96.3 0.0073 1.6E-07 55.4 5.6 68 320-389 51-124 (185)
232 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.023 5E-07 64.4 10.8 98 320-419 193-347 (702)
233 COG4627 Uncharacterized protei 96.1 0.0019 4.1E-08 59.7 0.5 57 363-420 31-87 (185)
234 COG0742 N6-adenine-specific me 96.0 0.061 1.3E-06 51.3 10.4 97 320-419 46-154 (187)
235 PF13578 Methyltransf_24: Meth 95.8 0.0041 8.9E-08 52.7 1.5 94 322-419 1-105 (106)
236 TIGR02987 met_A_Alw26 type II 95.8 0.039 8.4E-07 60.3 9.2 70 319-390 33-123 (524)
237 TIGR00308 TRM1 tRNA(guanine-26 95.7 0.028 6.1E-07 59.1 7.3 90 320-418 47-146 (374)
238 PF09445 Methyltransf_15: RNA 95.7 0.013 2.8E-07 54.6 4.3 65 320-386 2-76 (163)
239 COG4262 Predicted spermidine s 95.6 0.067 1.5E-06 55.7 9.5 135 318-454 290-444 (508)
240 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.5 0.034 7.3E-07 56.2 7.1 128 306-437 76-238 (283)
241 KOG1709 Guanidinoacetate methy 95.4 0.076 1.6E-06 51.8 8.5 101 320-424 104-211 (271)
242 PF04672 Methyltransf_19: S-ad 95.3 0.097 2.1E-06 52.6 9.1 106 317-424 68-195 (267)
243 KOG2793 Putative N2,N2-dimethy 95.2 0.2 4.4E-06 49.8 11.1 103 319-424 88-204 (248)
244 PF13679 Methyltransf_32: Meth 95.0 0.058 1.3E-06 48.5 6.2 39 318-358 26-70 (141)
245 COG3897 Predicted methyltransf 95.0 0.08 1.7E-06 50.9 7.2 109 303-422 67-182 (218)
246 PF06962 rRNA_methylase: Putat 94.9 0.19 4E-06 45.9 9.0 119 341-462 1-140 (140)
247 KOG3201 Uncharacterized conser 94.7 0.049 1.1E-06 50.9 4.8 118 319-442 31-162 (201)
248 PF03492 Methyltransf_7: SAM d 94.6 0.42 9.1E-06 49.5 12.0 117 306-424 4-188 (334)
249 COG1064 AdhP Zn-dependent alco 94.5 0.21 4.6E-06 51.8 9.5 97 311-421 162-261 (339)
250 PF10354 DUF2431: Domain of un 94.5 0.62 1.3E-05 43.5 11.8 118 324-443 3-149 (166)
251 COG0116 Predicted N6-adenine-s 94.4 0.36 7.9E-06 50.8 11.1 109 307-419 183-344 (381)
252 KOG2198 tRNA cytosine-5-methyl 94.4 0.27 5.9E-06 51.3 9.9 135 310-447 150-324 (375)
253 KOG1122 tRNA and rRNA cytosine 94.2 0.27 5.8E-06 52.2 9.6 124 309-437 235-390 (460)
254 cd00315 Cyt_C5_DNA_methylase C 94.1 1.2 2.5E-05 44.8 13.9 138 320-460 2-163 (275)
255 PRK13699 putative methylase; P 94.0 0.16 3.5E-06 49.7 7.3 80 364-446 3-99 (227)
256 COG1889 NOP1 Fibrillarin-like 93.9 1.4 3.1E-05 42.7 13.1 157 291-457 50-226 (231)
257 cd08254 hydroxyacyl_CoA_DH 6-h 93.9 0.51 1.1E-05 47.1 10.8 94 312-419 162-263 (338)
258 TIGR01444 fkbM_fam methyltrans 93.5 0.1 2.2E-06 46.1 4.4 37 320-358 1-39 (143)
259 PLN02668 indole-3-acetate carb 93.4 0.3 6.5E-06 51.6 8.4 49 374-423 157-241 (386)
260 KOG2187 tRNA uracil-5-methyltr 93.3 0.11 2.4E-06 56.2 4.9 63 306-372 374-442 (534)
261 COG4076 Predicted RNA methylas 93.0 0.17 3.6E-06 48.6 5.2 93 320-417 35-133 (252)
262 PF04989 CmcI: Cephalosporin h 92.7 0.32 6.8E-06 47.2 6.7 100 312-418 30-146 (206)
263 PF05971 Methyltransf_10: Prot 92.3 2.7 5.8E-05 43.1 13.2 70 319-390 104-188 (299)
264 PF06859 Bin3: Bicoid-interact 92.3 0.094 2E-06 45.8 2.3 39 379-418 1-43 (110)
265 COG5459 Predicted rRNA methyla 92.0 0.21 4.7E-06 51.9 4.9 106 319-424 115-230 (484)
266 KOG3115 Methyltransferase-like 92.0 0.42 9E-06 46.4 6.5 100 320-419 63-183 (249)
267 KOG2798 Putative trehalase [Ca 91.9 0.93 2E-05 46.6 9.2 121 320-445 153-336 (369)
268 KOG2730 Methylase [General fun 91.8 0.17 3.6E-06 49.6 3.6 90 320-414 97-197 (263)
269 KOG1596 Fibrillarin and relate 91.7 1.6 3.5E-05 43.4 10.3 101 312-420 153-262 (317)
270 PF03059 NAS: Nicotianamine sy 91.5 1 2.3E-05 45.5 9.1 98 318-419 121-230 (276)
271 COG2384 Predicted SAM-dependen 91.1 10 0.00022 37.3 15.0 133 320-463 19-159 (226)
272 cd08283 FDH_like_1 Glutathione 90.4 1.8 3.9E-05 45.1 10.1 106 310-419 179-306 (386)
273 KOG1099 SAM-dependent methyltr 89.9 0.45 9.8E-06 46.9 4.7 107 307-421 32-165 (294)
274 PRK11524 putative methyltransf 89.9 0.85 1.9E-05 45.9 6.9 80 363-446 9-106 (284)
275 PF00107 ADH_zinc_N: Zinc-bind 89.1 1.1 2.5E-05 38.5 6.3 85 327-422 1-92 (130)
276 PRK09880 L-idonate 5-dehydroge 89.0 2.7 5.8E-05 42.9 9.9 94 314-420 168-267 (343)
277 cd05188 MDR Medium chain reduc 89.0 3.5 7.5E-05 39.3 10.2 94 314-420 133-233 (271)
278 PF03269 DUF268: Caenorhabditi 88.8 0.33 7.1E-06 45.4 2.7 48 376-423 60-115 (177)
279 TIGR00006 S-adenosyl-methyltra 88.7 1.5 3.3E-05 45.0 7.7 78 308-389 13-102 (305)
280 PF07757 AdoMet_MTase: Predict 88.1 0.72 1.6E-05 40.3 4.2 28 319-346 60-87 (112)
281 PRK10742 putative methyltransf 88.0 2.3 5E-05 42.4 8.2 85 305-391 76-176 (250)
282 cd08230 glucose_DH Glucose deh 87.9 3.4 7.4E-05 42.2 9.8 95 314-420 171-270 (355)
283 PF00145 DNA_methylase: C-5 cy 87.4 5.7 0.00012 39.6 10.9 138 320-461 2-163 (335)
284 PF01861 DUF43: Protein of unk 87.0 9.4 0.0002 38.0 11.7 116 319-440 46-172 (243)
285 KOG0822 Protein kinase inhibit 86.4 1.5 3.3E-05 47.9 6.4 98 319-419 369-478 (649)
286 cd08232 idonate-5-DH L-idonate 86.1 5.5 0.00012 40.0 10.1 92 315-419 165-262 (339)
287 COG0270 Dcm Site-specific DNA 85.5 6.7 0.00014 40.4 10.5 139 319-460 4-167 (328)
288 cd08234 threonine_DH_like L-th 85.4 5.7 0.00012 39.7 9.8 99 309-420 153-258 (334)
289 TIGR03451 mycoS_dep_FDH mycoth 85.2 6.9 0.00015 40.1 10.4 96 312-420 173-277 (358)
290 cd08261 Zn_ADH7 Alcohol dehydr 85.1 6.4 0.00014 39.6 10.0 97 310-419 154-258 (337)
291 PF15361 RIC3: Resistance to i 85.1 1.7 3.6E-05 40.2 5.2 66 20-95 84-149 (152)
292 cd08294 leukotriene_B4_DH_like 84.5 8.7 0.00019 38.2 10.6 96 309-418 137-240 (329)
293 KOG2671 Putative RNA methylase 84.3 2.7 5.8E-05 43.9 6.7 112 307-420 200-355 (421)
294 cd08245 CAD Cinnamyl alcohol d 83.8 10 0.00022 37.9 10.7 96 311-419 158-256 (330)
295 COG1063 Tdh Threonine dehydrog 83.8 8.7 0.00019 39.8 10.5 94 320-424 171-274 (350)
296 TIGR02822 adh_fam_2 zinc-bindi 83.3 11 0.00024 38.3 10.9 93 311-420 161-255 (329)
297 TIGR02825 B4_12hDH leukotriene 82.9 14 0.0003 37.1 11.3 97 309-419 132-237 (325)
298 cd08281 liver_ADH_like1 Zinc-d 82.5 8 0.00017 39.9 9.6 97 311-420 187-291 (371)
299 PF04445 SAM_MT: Putative SAM- 82.4 4.6 0.0001 39.9 7.3 85 305-391 63-163 (234)
300 PF14314 Methyltrans_Mon: Viru 81.6 12 0.00026 42.4 11.0 85 377-464 413-502 (675)
301 cd05285 sorbitol_DH Sorbitol d 81.2 12 0.00026 37.8 10.2 97 310-419 157-265 (343)
302 PF02254 TrkA_N: TrkA-N domain 80.2 16 0.00035 30.8 9.3 101 326-441 4-112 (116)
303 cd08239 THR_DH_like L-threonin 79.9 17 0.00036 36.6 10.7 97 311-420 159-263 (339)
304 PF07091 FmrO: Ribosomal RNA m 79.9 7.9 0.00017 38.7 8.0 135 304-446 93-239 (251)
305 TIGR00675 dcm DNA-methyltransf 79.9 24 0.00051 36.2 11.8 136 321-460 1-160 (315)
306 cd08255 2-desacetyl-2-hydroxye 79.7 19 0.00041 34.9 10.7 95 310-419 92-190 (277)
307 PLN03154 putative allyl alcoho 79.4 19 0.00041 37.0 11.1 96 310-419 153-258 (348)
308 KOG4058 Uncharacterized conser 79.0 11 0.00024 35.1 8.0 112 306-427 60-180 (199)
309 cd08293 PTGR2 Prostaglandin re 78.1 22 0.00047 35.8 10.9 97 311-419 148-254 (345)
310 cd05278 FDH_like Formaldehyde 77.9 16 0.00034 36.7 9.8 94 312-418 164-266 (347)
311 cd08237 ribitol-5-phosphate_DH 77.8 11 0.00024 38.4 8.8 93 313-420 161-257 (341)
312 PF11899 DUF3419: Protein of u 77.8 2.9 6.3E-05 44.2 4.5 62 362-424 276-339 (380)
313 TIGR03366 HpnZ_proposed putati 77.0 18 0.00038 35.7 9.7 96 313-421 118-220 (280)
314 COG0604 Qor NADPH:quinone redu 76.4 21 0.00045 36.8 10.3 102 307-422 134-244 (326)
315 cd08236 sugar_DH NAD(P)-depend 76.3 27 0.00059 35.1 11.0 97 310-419 154-258 (343)
316 KOG2920 Predicted methyltransf 75.8 2.1 4.6E-05 43.3 2.7 95 319-418 118-233 (282)
317 COG2933 Predicted SAM-dependen 75.0 6.1 0.00013 40.0 5.6 72 313-389 209-280 (358)
318 TIGR01202 bchC 2-desacetyl-2-h 74.3 16 0.00036 36.6 8.8 84 320-420 147-232 (308)
319 cd08295 double_bond_reductase_ 74.1 29 0.00063 35.0 10.6 97 309-419 145-251 (338)
320 PRK09424 pntA NAD(P) transhydr 74.0 24 0.00053 38.8 10.5 98 314-419 163-285 (509)
321 COG0286 HsdM Type I restrictio 73.9 27 0.00058 38.2 10.8 111 306-420 177-327 (489)
322 PF01555 N6_N4_Mtase: DNA meth 72.5 8.5 0.00018 36.0 5.9 49 306-358 180-230 (231)
323 cd08285 NADP_ADH NADP(H)-depen 72.5 28 0.00061 35.3 10.1 97 311-420 162-267 (351)
324 PLN02740 Alcohol dehydrogenase 72.4 27 0.0006 36.1 10.2 97 311-420 194-301 (381)
325 cd08231 MDR_TM0436_like Hypoth 72.3 41 0.0009 34.2 11.3 92 315-419 177-280 (361)
326 KOG2651 rRNA adenine N-6-methy 71.9 9.5 0.00021 40.4 6.4 37 318-356 154-191 (476)
327 PRK10309 galactitol-1-phosphat 71.6 30 0.00065 35.0 10.1 97 312-421 157-262 (347)
328 TIGR03201 dearomat_had 6-hydro 70.7 34 0.00073 34.9 10.2 98 311-421 162-274 (349)
329 PF05934 MCLC: Mid-1-related c 70.5 8.3 0.00018 41.9 5.7 58 68-137 58-115 (549)
330 cd05281 TDH Threonine dehydrog 69.5 33 0.00072 34.6 9.8 93 314-419 162-262 (341)
331 KOG1562 Spermidine synthase [A 69.2 6.3 0.00014 40.4 4.3 98 318-418 122-235 (337)
332 PF01795 Methyltransf_5: MraW 69.0 13 0.00028 38.3 6.6 77 307-387 12-101 (310)
333 PTZ00357 methyltransferase; Pr 68.9 12 0.00027 42.5 6.7 94 320-414 703-830 (1072)
334 PLN02827 Alcohol dehydrogenase 68.8 32 0.0007 35.7 9.7 96 311-419 189-295 (378)
335 PRK01747 mnmC bifunctional tRN 68.6 29 0.00063 39.1 10.0 67 365-442 151-223 (662)
336 cd08298 CAD2 Cinnamyl alcohol 68.3 56 0.0012 32.5 11.1 94 309-419 161-256 (329)
337 cd08242 MDR_like Medium chain 67.9 52 0.0011 32.6 10.7 94 310-419 150-245 (319)
338 KOG0024 Sorbitol dehydrogenase 67.5 50 0.0011 34.5 10.4 101 310-423 164-277 (354)
339 KOG1501 Arginine N-methyltrans 67.4 8.8 0.00019 41.4 5.1 40 318-359 67-107 (636)
340 cd08233 butanediol_DH_like (2R 66.9 49 0.0011 33.5 10.5 99 310-421 167-274 (351)
341 TIGR00692 tdh L-threonine 3-de 66.8 44 0.00095 33.7 10.0 94 314-420 160-262 (340)
342 TIGR02818 adh_III_F_hyde S-(hy 66.6 52 0.0011 33.9 10.7 97 311-420 181-288 (368)
343 cd08278 benzyl_alcohol_DH Benz 66.1 48 0.0011 34.0 10.3 96 311-419 182-285 (365)
344 cd08241 QOR1 Quinone oxidoredu 65.9 61 0.0013 31.4 10.6 94 312-419 136-238 (323)
345 cd08263 Zn_ADH10 Alcohol dehyd 65.8 44 0.00096 34.1 10.0 94 313-419 185-287 (367)
346 PLN02586 probable cinnamyl alc 65.5 42 0.0009 34.6 9.7 95 313-419 181-278 (360)
347 cd08279 Zn_ADH_class_III Class 65.1 35 0.00075 34.9 9.0 96 311-419 178-282 (363)
348 cd08258 Zn_ADH4 Alcohol dehydr 64.9 78 0.0017 31.5 11.3 99 311-421 160-266 (306)
349 COG0541 Ffh Signal recognition 64.5 43 0.00093 36.2 9.5 113 329-442 118-244 (451)
350 TIGR00064 ftsY signal recognit 63.6 93 0.002 31.2 11.5 127 319-446 73-226 (272)
351 cd08277 liver_alcohol_DH_like 62.3 70 0.0015 32.8 10.7 97 311-420 180-287 (365)
352 cd08301 alcohol_DH_plants Plan 62.1 63 0.0014 33.1 10.3 98 311-421 183-291 (369)
353 TIGR00027 mthyl_TIGR00027 meth 61.9 82 0.0018 31.4 10.7 101 318-421 82-199 (260)
354 cd08300 alcohol_DH_class_III c 61.6 68 0.0015 32.9 10.5 98 311-421 182-290 (368)
355 TIGR00561 pntA NAD(P) transhyd 61.2 29 0.00063 38.3 7.9 91 320-416 166-281 (511)
356 TIGR00872 gnd_rel 6-phosphoglu 60.7 57 0.0012 32.9 9.5 109 321-440 3-113 (298)
357 PF06460 NSP13: Coronavirus NS 60.6 70 0.0015 32.5 9.6 128 320-459 64-207 (299)
358 cd00401 AdoHcyase S-adenosyl-L 60.5 51 0.0011 35.4 9.4 88 315-421 201-291 (413)
359 PRK11524 putative methyltransf 60.5 20 0.00044 36.0 6.1 52 305-360 196-249 (284)
360 PRK07417 arogenate dehydrogena 59.9 46 0.001 33.2 8.6 81 321-413 3-85 (279)
361 COG0287 TyrA Prephenate dehydr 59.9 54 0.0012 33.2 9.1 87 320-414 5-93 (279)
362 cd05286 QOR2 Quinone oxidoredu 57.7 1.1E+02 0.0024 29.5 10.7 94 311-418 132-234 (320)
363 PRK10867 signal recognition pa 57.6 1.2E+02 0.0027 32.7 11.8 102 320-422 102-225 (433)
364 cd08235 iditol_2_DH_like L-idi 57.6 1E+02 0.0022 30.8 10.7 96 311-419 161-265 (343)
365 TIGR00959 ffh signal recogniti 57.2 1.8E+02 0.0039 31.4 12.9 124 320-445 101-247 (428)
366 cd08240 6_hydroxyhexanoate_dh_ 57.2 1E+02 0.0022 31.1 10.6 89 320-419 178-274 (350)
367 PF02153 PDH: Prephenate dehyd 57.1 38 0.00081 33.6 7.3 72 331-414 1-74 (258)
368 cd08243 quinone_oxidoreductase 56.9 99 0.0022 30.1 10.3 92 312-419 139-238 (320)
369 PRK05396 tdh L-threonine 3-deh 56.9 70 0.0015 32.1 9.4 90 320-420 166-264 (341)
370 cd08292 ETR_like_2 2-enoyl thi 56.8 90 0.0019 30.7 10.1 95 311-419 135-238 (324)
371 PHA01634 hypothetical protein 56.6 21 0.00045 32.6 4.7 38 320-359 31-69 (156)
372 COG4301 Uncharacterized conser 55.9 92 0.002 31.6 9.5 98 320-420 81-194 (321)
373 COG0275 Predicted S-adenosylme 55.5 43 0.00094 34.5 7.4 76 307-386 15-103 (314)
374 COG3129 Predicted SAM-dependen 55.0 41 0.00089 33.6 6.9 98 291-390 39-164 (292)
375 PRK13699 putative methylase; P 54.8 29 0.00063 33.9 6.0 51 306-360 152-204 (227)
376 cd08296 CAD_like Cinnamyl alco 53.7 99 0.0021 31.0 9.9 95 312-419 160-259 (333)
377 TIGR02819 fdhA_non_GSH formald 53.5 89 0.0019 32.8 9.8 106 312-421 182-301 (393)
378 cd05289 MDR_like_2 alcohol deh 53.5 1.3E+02 0.0027 29.0 10.3 91 313-418 142-237 (309)
379 PRK10458 DNA cytosine methylas 53.5 3E+02 0.0065 30.1 14.0 53 320-373 90-146 (467)
380 PRK00050 16S rRNA m(4)C1402 me 53.2 18 0.0004 37.0 4.4 29 397-425 214-242 (296)
381 COG3510 CmcI Cephalosporin hyd 52.6 63 0.0014 31.5 7.5 101 312-419 67-180 (237)
382 cd08286 FDH_like_ADH2 formalde 51.4 1.3E+02 0.0029 30.1 10.5 94 312-418 163-265 (345)
383 TIGR00006 S-adenosyl-methyltra 51.4 19 0.0004 37.1 4.2 30 397-426 218-247 (305)
384 cd08274 MDR9 Medium chain dehy 51.1 1.3E+02 0.0028 30.1 10.2 92 311-418 173-272 (350)
385 cd08260 Zn_ADH6 Alcohol dehydr 51.0 1.2E+02 0.0026 30.4 10.1 95 312-419 162-264 (345)
386 PRK15001 SAM-dependent 23S rib 50.1 1.1E+02 0.0024 32.4 9.8 109 303-420 31-143 (378)
387 PF05430 Methyltransf_30: S-ad 49.7 34 0.00073 30.5 5.0 71 363-444 33-109 (124)
388 cd08297 CAD3 Cinnamyl alcohol 49.6 1.2E+02 0.0027 30.2 9.9 95 312-419 162-265 (341)
389 KOG1197 Predicted quinone oxid 49.0 1.1E+02 0.0025 31.1 9.0 98 306-417 137-243 (336)
390 cd08269 Zn_ADH9 Alcohol dehydr 49.0 2.1E+02 0.0045 27.9 11.2 97 310-419 124-229 (312)
391 PF01555 N6_N4_Mtase: DNA meth 48.7 27 0.00058 32.6 4.6 49 398-447 35-87 (231)
392 cd08266 Zn_ADH_like1 Alcohol d 48.7 1.4E+02 0.0031 29.2 10.0 95 311-419 162-265 (342)
393 cd08267 MDR1 Medium chain dehy 48.0 1.9E+02 0.0041 28.1 10.7 94 313-419 141-240 (319)
394 PLN02514 cinnamyl-alcohol dehy 47.9 1.3E+02 0.0028 30.8 9.8 94 314-420 179-276 (357)
395 cd08244 MDR_enoyl_red Possible 47.5 1.8E+02 0.004 28.4 10.6 96 310-419 137-241 (324)
396 PRK11677 hypothetical protein; 47.0 67 0.0014 29.2 6.5 27 15-41 1-27 (134)
397 cd08270 MDR4 Medium chain dehy 46.2 2.4E+02 0.0052 27.4 11.1 85 320-419 135-222 (305)
398 PLN02178 cinnamyl-alcohol dehy 46.2 77 0.0017 33.0 7.9 94 315-420 178-274 (375)
399 cd05279 Zn_ADH1 Liver alcohol 46.1 1.2E+02 0.0026 31.0 9.3 96 311-419 179-285 (365)
400 cd05288 PGDH Prostaglandin deh 45.4 1.8E+02 0.0039 28.7 10.2 94 312-419 142-244 (329)
401 cd08268 MDR2 Medium chain dehy 45.0 2.2E+02 0.0047 27.6 10.6 94 312-419 141-243 (328)
402 cd08250 Mgc45594_like Mgc45594 44.7 1.9E+02 0.0041 28.6 10.2 93 312-418 136-236 (329)
403 PF03446 NAD_binding_2: NAD bi 44.4 45 0.00098 30.4 5.2 110 320-442 3-116 (163)
404 PRK07502 cyclohexadienyl dehyd 44.4 1.2E+02 0.0026 30.6 8.8 87 319-416 7-97 (307)
405 PF01242 PTPS: 6-pyruvoyl tetr 44.4 16 0.00035 31.9 2.1 91 35-134 6-111 (123)
406 KOG2539 Mitochondrial/chloropl 44.4 1.3E+02 0.0028 32.9 9.2 104 319-424 202-320 (491)
407 KOG1098 Putative SAM-dependent 44.3 36 0.00079 38.3 5.2 34 313-348 42-78 (780)
408 cd08291 ETR_like_1 2-enoyl thi 43.6 92 0.002 31.1 7.8 81 328-420 156-243 (324)
409 cd05283 CAD1 Cinnamyl alcohol 43.4 1.6E+02 0.0036 29.5 9.7 95 312-419 166-263 (337)
410 TIGR01425 SRP54_euk signal rec 43.0 4.6E+02 0.01 28.4 13.2 126 320-447 102-249 (429)
411 PRK10083 putative oxidoreducta 42.8 1.8E+02 0.0038 29.1 9.7 97 311-420 156-260 (339)
412 cd05282 ETR_like 2-enoyl thioe 42.5 1.7E+02 0.0038 28.6 9.5 92 313-418 136-236 (323)
413 PLN02702 L-idonate 5-dehydroge 41.7 2.6E+02 0.0055 28.5 10.9 96 311-419 177-285 (364)
414 PF02005 TRM: N2,N2-dimethylgu 41.7 49 0.0011 35.0 5.6 90 320-418 52-153 (377)
415 COG1255 Uncharacterized protei 41.5 1.1E+02 0.0024 27.3 6.8 87 320-421 16-104 (129)
416 PRK10754 quinone oxidoreductas 41.4 2.3E+02 0.0049 28.0 10.2 94 312-419 137-239 (327)
417 PTZ00354 alcohol dehydrogenase 41.4 2.5E+02 0.0054 27.6 10.5 94 312-419 137-240 (334)
418 PRK06701 short chain dehydroge 41.3 1.7E+02 0.0037 29.0 9.3 100 320-419 48-181 (290)
419 COG0275 Predicted S-adenosylme 41.3 31 0.00068 35.5 3.9 31 397-427 222-252 (314)
420 cd08238 sorbose_phosphate_red 40.6 2.2E+02 0.0049 29.7 10.4 93 312-417 172-286 (410)
421 TIGR02817 adh_fam_1 zinc-bindi 40.3 2.1E+02 0.0046 28.3 9.8 87 320-418 151-246 (336)
422 PRK03659 glutathione-regulated 40.1 84 0.0018 35.2 7.5 87 320-417 402-496 (601)
423 PF03721 UDPG_MGDP_dh_N: UDP-g 39.6 67 0.0015 30.3 5.7 115 321-438 3-139 (185)
424 PRK10669 putative cation:proto 39.6 1.4E+02 0.003 33.0 9.0 108 320-442 419-532 (558)
425 PRK07806 short chain dehydroge 38.7 3.3E+02 0.0071 25.6 10.5 99 320-418 8-133 (248)
426 PF02636 Methyltransf_28: Puta 38.7 35 0.00077 33.5 3.8 37 319-357 20-66 (252)
427 PRK05708 2-dehydropantoate 2-r 38.3 1.9E+02 0.0042 29.2 9.2 90 320-417 4-102 (305)
428 cd08290 ETR 2-enoyl thioester 38.3 2.3E+02 0.0049 28.2 9.7 96 312-419 143-251 (341)
429 TIGR01470 cysG_Nterm siroheme 37.7 1.6E+02 0.0036 28.1 8.2 65 320-387 11-77 (205)
430 PTZ00270 variable surface prot 37.6 10 0.00023 39.3 -0.2 38 17-55 271-313 (333)
431 COG1565 Uncharacterized conser 37.3 95 0.0021 32.8 6.8 36 319-356 79-124 (370)
432 PRK12490 6-phosphogluconate de 37.2 1.9E+02 0.004 29.2 8.9 109 321-439 3-113 (299)
433 KOG0780 Signal recognition par 36.7 3.1E+02 0.0068 29.6 10.4 110 330-440 120-243 (483)
434 cd08276 MDR7 Medium chain dehy 36.6 3.1E+02 0.0066 26.9 10.2 94 312-419 157-259 (336)
435 COG1867 TRM1 N2,N2-dimethylgua 36.2 1.2E+02 0.0025 32.3 7.2 92 318-418 53-153 (380)
436 PF01558 POR: Pyruvate ferredo 36.2 88 0.0019 28.7 5.9 73 331-421 12-88 (173)
437 cd08265 Zn_ADH3 Alcohol dehydr 36.1 2.3E+02 0.005 29.2 9.6 95 312-419 200-307 (384)
438 cd08246 crotonyl_coA_red croto 36.1 2.6E+02 0.0056 28.8 10.0 93 313-419 191-315 (393)
439 cd05284 arabinose_DH_like D-ar 35.8 2.3E+02 0.0051 28.1 9.3 94 313-419 165-266 (340)
440 KOG2078 tRNA modification enzy 35.4 28 0.00062 37.5 2.6 70 281-359 220-289 (495)
441 PRK15182 Vi polysaccharide bio 35.0 85 0.0018 33.7 6.2 113 320-436 8-137 (425)
442 PRK05786 fabG 3-ketoacyl-(acyl 34.9 3.3E+02 0.0072 25.4 9.8 99 320-420 7-136 (238)
443 cd08289 MDR_yhfp_like Yhfp put 34.9 1.7E+02 0.0036 28.9 8.0 89 320-420 149-244 (326)
444 cd08287 FDH_like_ADH3 formalde 34.8 4.2E+02 0.0091 26.4 11.1 96 311-419 164-268 (345)
445 PRK03762 hypothetical protein; 34.6 48 0.001 28.7 3.5 28 60-87 2-29 (103)
446 COG0373 HemA Glutamyl-tRNA red 33.2 1.8E+02 0.0039 31.4 8.2 68 319-389 179-248 (414)
447 cd08273 MDR8 Medium chain dehy 32.9 3.4E+02 0.0073 26.7 9.9 92 311-418 135-232 (331)
448 PF14584 DUF4446: Protein of u 32.8 74 0.0016 29.4 4.6 24 61-87 40-63 (151)
449 PF14740 DUF4471: Domain of un 30.9 60 0.0013 33.2 4.0 58 377-442 220-285 (289)
450 PRK14974 cell division protein 30.6 4.9E+02 0.011 27.1 10.8 69 378-447 221-289 (336)
451 PF01408 GFO_IDH_MocA: Oxidore 30.5 2.2E+02 0.0048 23.8 7.0 107 320-438 2-113 (120)
452 PRK06274 indolepyruvate oxidor 30.4 2.2E+02 0.0047 26.7 7.6 71 331-419 22-96 (197)
453 PRK10416 signal recognition pa 30.4 6.2E+02 0.013 26.0 11.9 67 377-444 194-266 (318)
454 cd08264 Zn_ADH_like2 Alcohol d 30.3 3.2E+02 0.007 26.9 9.2 88 311-419 158-253 (325)
455 COG0773 MurC UDP-N-acetylmuram 30.0 59 0.0013 35.4 4.0 51 321-373 12-64 (459)
456 KOG2264 Exostosin EXT1L [Signa 29.7 1.6E+02 0.0034 33.1 7.0 18 359-376 444-461 (907)
457 TIGR02824 quinone_pig3 putativ 29.7 4.2E+02 0.009 25.5 9.8 95 311-419 135-238 (325)
458 PF10921 DUF2710: Protein of u 29.4 80 0.0017 27.1 3.8 26 70-95 18-43 (109)
459 KOG0023 Alcohol dehydrogenase, 29.2 93 0.002 32.6 5.0 99 312-422 178-282 (360)
460 cd05195 enoyl_red enoyl reduct 29.0 4.7E+02 0.01 24.4 9.8 94 311-418 104-208 (293)
461 PF02558 ApbA: Ketopantoate re 28.7 1.9E+02 0.0041 25.4 6.6 86 322-417 2-99 (151)
462 COG0677 WecC UDP-N-acetyl-D-ma 28.6 3.7E+02 0.008 29.1 9.4 110 320-436 11-145 (436)
463 PF03686 UPF0146: Uncharacteri 28.2 1.2E+02 0.0027 27.3 5.0 88 320-422 16-105 (127)
464 PF03514 GRAS: GRAS domain fam 28.1 3.2E+02 0.0068 28.8 9.0 115 301-417 96-242 (374)
465 cd08299 alcohol_DH_class_I_II_ 27.8 4.3E+02 0.0094 27.1 10.0 97 311-420 186-293 (373)
466 cd08251 polyketide_synthase po 27.6 4.8E+02 0.01 24.8 9.7 94 311-418 116-218 (303)
467 PRK09599 6-phosphogluconate de 27.3 5.7E+02 0.012 25.6 10.5 110 321-440 3-114 (301)
468 cd08253 zeta_crystallin Zeta-c 27.2 5.6E+02 0.012 24.5 11.1 94 311-418 140-242 (325)
469 PF01795 Methyltransf_5: MraW 27.1 46 0.00099 34.4 2.5 40 396-437 218-257 (310)
470 PRK08306 dipicolinate synthase 26.9 2.3E+02 0.005 28.7 7.5 84 319-416 153-238 (296)
471 cd08256 Zn_ADH2 Alcohol dehydr 26.9 4.6E+02 0.01 26.3 9.8 97 310-419 169-274 (350)
472 COG0686 Ald Alanine dehydrogen 26.7 1.3E+02 0.0029 31.4 5.6 92 320-416 170-265 (371)
473 cd08284 FDH_like_2 Glutathione 26.7 6.4E+02 0.014 25.0 11.4 94 312-419 164-266 (344)
474 PRK09072 short chain dehydroge 26.7 4.1E+02 0.0089 25.4 9.0 68 320-389 7-90 (263)
475 TIGR00518 alaDH alanine dehydr 26.6 96 0.0021 32.6 4.8 93 320-417 169-265 (370)
476 KOG2912 Predicted DNA methylas 26.5 7.9E+02 0.017 26.0 12.1 140 306-445 88-274 (419)
477 PF11446 DUF2897: Protein of u 26.3 66 0.0014 24.8 2.6 28 15-44 4-31 (55)
478 PRK12742 oxidoreductase; Provi 26.1 5.3E+02 0.012 23.9 10.5 99 320-419 8-131 (237)
479 PRK09422 ethanol-active dehydr 25.4 4E+02 0.0086 26.4 8.9 96 310-419 157-261 (338)
480 cd08262 Zn_ADH8 Alcohol dehydr 25.1 5.7E+02 0.012 25.3 10.1 97 311-420 157-265 (341)
481 KOG1253 tRNA methyltransferase 25.1 52 0.0011 36.1 2.5 90 320-418 112-215 (525)
482 PF11253 DUF3052: Protein of u 24.9 3.3E+02 0.0071 24.6 7.1 64 377-444 43-109 (127)
483 cd08282 PFDH_like Pseudomonas 24.8 4.6E+02 0.01 26.8 9.5 104 311-420 172-286 (375)
484 PF03954 Lectin_N: Hepatic lec 24.7 1.2E+02 0.0027 27.7 4.4 24 66-89 83-106 (138)
485 TIGR01832 kduD 2-deoxy-D-gluco 24.7 2.1E+02 0.0045 27.1 6.4 71 319-389 6-90 (248)
486 PF12273 RCR: Chitin synthesis 24.7 53 0.0011 29.1 2.1 18 13-30 1-18 (130)
487 COG1893 ApbA Ketopantoate redu 24.6 4E+02 0.0086 27.3 8.8 88 320-417 2-99 (307)
488 TIGR02209 ftsL_broad cell divi 24.4 3.6E+02 0.0077 21.6 6.9 29 66-94 27-55 (85)
489 KOG3366 Mitochondrial F1F0-ATP 24.4 1.3E+02 0.0028 28.5 4.6 44 62-111 97-140 (172)
490 cd05276 p53_inducible_oxidored 24.3 6.3E+02 0.014 24.1 10.4 94 312-419 136-238 (323)
491 cd08249 enoyl_reductase_like e 24.3 2.9E+02 0.0064 27.7 7.8 87 320-418 157-253 (339)
492 KOG1209 1-Acyl dihydroxyaceton 24.1 2.1E+02 0.0046 28.5 6.2 67 319-387 8-89 (289)
493 TIGR00936 ahcY adenosylhomocys 24.1 5.8E+02 0.013 27.4 10.1 101 315-434 194-297 (406)
494 PF11899 DUF3419: Protein of u 24.1 1.6E+02 0.0035 31.2 6.0 46 307-354 27-72 (380)
495 PRK05476 S-adenosyl-L-homocyst 23.9 3.5E+02 0.0076 29.2 8.5 88 320-424 214-304 (425)
496 PRK03562 glutathione-regulated 23.8 1.9E+02 0.0042 32.5 6.9 108 320-442 402-515 (621)
497 PRK02261 methylaspartate mutas 23.7 5.3E+02 0.012 23.1 10.1 94 330-442 22-116 (137)
498 COG3315 O-Methyltransferase in 23.7 4.8E+02 0.01 26.6 9.1 99 318-419 93-209 (297)
499 TIGR01751 crot-CoA-red crotony 23.6 5.4E+02 0.012 26.6 9.8 93 313-419 187-310 (398)
500 PRK06249 2-dehydropantoate 2-r 23.4 3.7E+02 0.008 27.1 8.3 89 319-417 6-104 (313)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.8e-34 Score=297.61 Aligned_cols=236 Identities=28% Similarity=0.443 Sum_probs=191.5
Q ss_pred CCCCcHH-HHH-------HHHHcCCCCC-CCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCC
Q 012235 206 YCKDDWN-LAQ-------KLMVNGCDPL-PRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPK 276 (467)
Q Consensus 206 ~Cp~d~~-l~~-------~l~~~~C~pl-prr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~ 276 (467)
+|-|... +.. ..++|||||. ++.+|++++|+||+.|+|||+| ++++|++|. ++++|++.+..
T Consensus 4 PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~S-------Rd~iW~~Nv--ph~~L~~~K~~ 74 (506)
T PF03141_consen 4 PCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKS-------RDYIWYANV--PHTKLAEEKAD 74 (506)
T ss_pred CCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcc-------cceeeeccc--CchHHhhhccc
Confidence 8999876 333 3578999994 5889999999999999999999 689999874 89999999999
Q ss_pred CCCCccCCchhhhcccccccccCCc-----ChHHHHHH---HhcC--CCCCCceEEEECCCccHHHHHHhhCCCEEEEEe
Q 012235 277 RGYSKCTGCFEMDKEKPKWVANRSV-----PVDFLISD---ILAI--KPGETRIGLDFGVGTGTFAARMREQNVTIVSTA 346 (467)
Q Consensus 277 ~~~~~C~~cfdm~~e~~~W~~~~~~-----~~d~~I~~---lL~l--~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvd 346 (467)
++| |..+++.|.++.++ +++.||++ ++.. ..+.+|++||+|||+|+|+++|.++++.+++++
T Consensus 75 qnW--------v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a 146 (506)
T PF03141_consen 75 QNW--------VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFA 146 (506)
T ss_pred ccc--------eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcc
Confidence 999 77888888886543 56667654 4554 557789999999999999999999999999988
Q ss_pred cCCCH-HHHHHHHHcCCccEEEc--cCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 347 LNLGA-PFNEMIALRGLIPLYVT--LNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 347 iDiS~-~~l~~a~~rg~i~~~~~--d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+..+. ..++.|.+||. +.+.+ ..++|||++++||+|||+.++..|....+ .+|.|++|+|||||+|+++.+...
T Consensus 147 ~~d~~~~qvqfaleRGv-pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 147 PNDEHEAQVQFALERGV-PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccCCchhhhhhhhcCc-chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCccc
Confidence 86554 55777888994 44444 37899999999999999999999998864 699999999999999999887665
Q ss_pred -CC--CHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecCCCC
Q 012235 424 -KK--DLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRA 466 (467)
Q Consensus 424 -~~--~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP~~~ 466 (467)
+. +.....+.++.+ .+.+||+...+..+ .+|||||..+
T Consensus 224 ~r~~~~~~~~~~~~~~l-~~~lCW~~va~~~~----~aIwqKp~~~ 264 (506)
T PF03141_consen 224 QRTDEDLEEEWNAMEDL-AKSLCWKKVAEKGD----TAIWQKPTNN 264 (506)
T ss_pred ccchHHHHHHHHHHHHH-HHHHHHHHheeeCC----EEEEeccCCc
Confidence 22 222333444444 58899998888777 9999999764
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.84 E-value=1.2e-20 Score=197.96 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=177.2
Q ss_pred ccCchhhhhhhcHHHHhhhhcCCCCCCCCCcHHHHHHHHHcCCCCCCCCCccccCCCC-----CCCCccCCccCCCCCCC
Q 012235 180 IHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKV-----YQKPFPINESLWKLPDG 254 (467)
Q Consensus 180 ~~~~~~~~c~~~~~~l~~~m~y~~~~~Cp~d~~l~~~l~~~~C~plprr~C~~~ap~g-----Y~~plp~P~s~~~~p~d 254 (467)
-++|+.|+|+..++ ..+....|..+.+....|+ .|.+.|+.+.|.. -..+.+||+++.+.|+.
T Consensus 258 wqKp~~~~Cy~~r~------~~~~pplC~~~~dpd~aWY------~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~r 325 (506)
T PF03141_consen 258 WQKPTNNSCYQKRK------PGKSPPLCDSSDDPDAAWY------VPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPR 325 (506)
T ss_pred EeccCCchhhhhcc------CCCCCCCCCCCCCCcchhh------cchhhhcCcCCcccccccccCCCCChhhhccCchh
Confidence 37999999999886 5788999996656677888 7788999999875 56789999999988875
Q ss_pred CcccccccccccccccccCCCCCCCCccCCchhhhcccccccccCCcChHHHHHH-HhcCCCCCCceEEEECCCccHHHH
Q 012235 255 RNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANRSVPVDFLISD-ILAIKPGETRIGLDFGVGTGTFAA 333 (467)
Q Consensus 255 ~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~cfdm~~e~~~W~~~~~~~~d~~I~~-lL~l~~g~~r~VLDIGCGtG~~a~ 333 (467)
-... ...+ ... -++.++.+.|... ...|..- -+.+..+.+|+|+|+.+|.|+||+
T Consensus 326 l~~~-----------~~~g-~~~--------e~F~~Dt~~Wk~~----V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAA 381 (506)
T PF03141_consen 326 LSSG-----------SIPG-ISP--------EEFKEDTKHWKKR----VSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAA 381 (506)
T ss_pred hhcC-----------CcCC-CCH--------HHHHHHHHHHHHH----HHHHHHhhcccccccceeeeeeecccccHHHH
Confidence 2210 0001 111 1356888999883 3333211 134778889999999999999999
Q ss_pred HHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCc
Q 012235 334 RMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG 413 (467)
Q Consensus 334 ~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG 413 (467)
+|.+..++|+.+.+...++.+..+.+||++..++.+++.+++++++||+||++..+.++.+.+.++.++.|++|+|||||
T Consensus 382 AL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G 461 (506)
T PF03141_consen 382 ALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGG 461 (506)
T ss_pred HhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 414 LLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 414 ~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.+|| +++.+ ++..++.+ .+.++|.+
T Consensus 462 ~~ii------RD~~~-vl~~v~~i-~~~lrW~~ 486 (506)
T PF03141_consen 462 WVII------RDTVD-VLEKVKKI-AKSLRWEV 486 (506)
T ss_pred eEEE------eccHH-HHHHHHHH-HHhCcceE
Confidence 9999 65553 33333333 35555653
No 3
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.81 E-value=7.2e-20 Score=181.98 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=127.3
Q ss_pred CCCCcHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCCCCCCccCC
Q 012235 206 YCKDDWN-LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTG 284 (467)
Q Consensus 206 ~Cp~d~~-l~~~l~~~~C~plprr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~ 284 (467)
.||.|.. +........|+. +||||.+++||++++|-+.+....|+|..
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~---~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~---------------------------- 52 (272)
T PRK11088 4 QCPLCHQPLTLEENSWICPQ---NHQFDCAKEGYVNLLPVQHKRSKDPGDNK---------------------------- 52 (272)
T ss_pred cCCCCCcchhcCCCEEEcCC---CCCCccccCceEEeccccccCCCCCCcCH----------------------------
Confidence 5999987 655567789998 99999999999999986666544444332
Q ss_pred chhhhcccccccccCCcChHH--HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCC-----CEEEEEecCCCHHHHHH
Q 012235 285 CFEMDKEKPKWVANRSVPVDF--LISDILA-IKPGETRIGLDFGVGTGTFAARMREQN-----VTIVSTALNLGAPFNEM 356 (467)
Q Consensus 285 cfdm~~e~~~W~~~~~~~~d~--~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g-----~~V~gvdiDiS~~~l~~ 356 (467)
.|.+.+++|+. .+++... .+.+.+. ..+....+|||+|||+|.++..+++.. ..++| +|+|+.+++.
T Consensus 53 --~~~~ar~~fl~-~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g--iD~s~~~l~~ 127 (272)
T PRK11088 53 --EMMQARRAFLD-AGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFG--LDISKVAIKY 127 (272)
T ss_pred --HHHHHHHHHHH-CCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEE--ECCCHHHHHH
Confidence 36677777776 5554332 2222232 212222379999999999999988652 35666 8899999999
Q ss_pred HHHcC-CccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 357 IALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 357 a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++++. .+.+.++|+..+|+++++||+|++.++. ..+.++.|+|||||+|++..+.
T Consensus 128 A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~----------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 128 AAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP----------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred HHHhCCCCeEEEeecccCCCcCCceeEEEEecCC----------CCHHHHHhhccCCCEEEEEeCC
Confidence 98764 4789999999999999999999987653 2468999999999999997653
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=6.8e-17 Score=157.95 Aligned_cols=108 Identities=29% Similarity=0.409 Sum_probs=92.3
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHcCC------ccEEEccCCCCccCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALRGL------IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg~------i~~~~~d~~~Lpf~d~sFD 381 (467)
.+...+|. +|||+|||||.++..+++.. .+|++ +|+|+.|++.++++.. +.++++|++.|||+|++||
T Consensus 46 ~~~~~~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~--~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 46 LLGIKPGD--KVLDVACGTGDMALLLAKSVGTGEVVG--LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred hhCCCCCC--EEEEecCCccHHHHHHHHhcCCceEEE--EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 33444666 99999999999999999884 55666 8999999999987631 7799999999999999999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+|.+++.+.++.+. +.+|+|++|||||||.+++.++..+.
T Consensus 122 ~vt~~fglrnv~d~---~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 122 AVTISFGLRNVTDI---DKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred EEEeeehhhcCCCH---HHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999666655 79999999999999999998876654
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=1.1e-16 Score=156.47 Aligned_cols=112 Identities=24% Similarity=0.390 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d 377 (467)
+.+.+...++. +|||+|||||.++..++++ + ..|++ +|+|+.|++.++++ ..+.++++|++++|+++
T Consensus 39 ~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 39 LIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 33445666666 9999999999999999876 3 46777 88999999998764 24889999999999999
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
++||+|++.+++.++.+. ..++.|+.|+|||||.+++.++..+..
T Consensus 115 ~sfD~v~~~fglrn~~d~---~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDR---ERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp T-EEEEEEES-GGG-SSH---HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred CceeEEEHHhhHHhhCCH---HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 999999999999666655 689999999999999999999887764
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=7.7e-16 Score=126.05 Aligned_cols=91 Identities=27% Similarity=0.474 Sum_probs=77.5
Q ss_pred EEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCC---ccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 322 LDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 322 LDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~---i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
||+|||+|.++..++++ +..+++ +|+++++++.++++.. +.+.+++...+|+++++||+|++..+++|+ ++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~--~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTG--IDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-ED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEE--EES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEE--EeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cC--
Confidence 89999999999999999 899999 7788899998887643 559999999999999999999999999666 33
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 012235 398 LDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI 417 (467)
...+++|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 47999999999999999986
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=5.3e-15 Score=146.65 Aligned_cols=131 Identities=21% Similarity=0.189 Sum_probs=104.4
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHcC---------CccEEEccCCCCccC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALRG---------LIPLYVTLNQRLPFF 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~rg---------~i~~~~~d~~~Lpf~ 376 (467)
+.+.+.++. +|||+|||+|.++..++++ + ..|+| +|+|+.|++.++++. .+.++++|++.+|++
T Consensus 67 ~~~~~~~~~--~VLDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 67 SWSGAKMGD--RVLDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC
Confidence 344555665 8999999999999999876 3 47777 889999999886541 367899999999999
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------------------------
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------------- 425 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------------- 425 (467)
+++||+|+++++++|+.+. ..++.|+.|+|||||.+++.++..+..
T Consensus 143 ~~sfD~V~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDR---LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCCEeEEEEecccccCCCH---HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 9999999999999666554 689999999999999999987654321
Q ss_pred --------CHHHHHHHHHHcCceeeEEEE
Q 012235 426 --------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 426 --------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+.+++.+++++.||+.+++..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 234667788888998876543
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=4.2e-14 Score=140.40 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=107.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sF 380 (467)
.+...+.+.++. +|||||||+|..+..+++. +.+|++ +|+++.+++.+.++ ..+.+..+|+...|+++++|
T Consensus 43 ~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~g--iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 43 KILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHG--VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEE--EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 344555666666 8999999999999999765 678888 77889998888764 24778889988889989999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCcee
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~ 441 (467)
|+|++..++.|+... ....+++++.++|||||.|++.++.... .....+.++++..||..
T Consensus 119 D~V~s~~~l~h~~~~-d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 119 DMIYSRDAILHLSYA-DKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred EEEEEhhhHHhCCHH-HHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCe
Confidence 999999888676532 2578999999999999999998764322 12357888899999988
Q ss_pred eEEEE
Q 012235 442 HKWAI 446 (467)
Q Consensus 442 l~W~~ 446 (467)
+.+.-
T Consensus 198 v~~~d 202 (263)
T PTZ00098 198 VVAKD 202 (263)
T ss_pred eeEEe
Confidence 87753
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=3.5e-14 Score=145.95 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=99.2
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
.+|||||||+|.++..++++ +..|+| +|+++.+++.+.++ + .+.++++|+..+|+++++||+|++..+++
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~g--vD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKG--ITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 38999999999999999986 788998 67788887766542 3 37899999999999999999999999998
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccC----C------------------------CCHHHHHHHHHHcCceee
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN----K------------------------KDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~----~------------------------~~~~~~~~~i~~~Gf~~l 442 (467)
|+.+. ..++.++.|+|||||.|++.++... . ...+++.+++++.||..+
T Consensus 198 h~~d~---~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 198 HMPDK---RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDI 274 (340)
T ss_pred ccCCH---HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCee
Confidence 88765 5899999999999999999765321 0 023477788888999877
Q ss_pred EEE
Q 012235 443 KWA 445 (467)
Q Consensus 443 ~W~ 445 (467)
...
T Consensus 275 ~~~ 277 (340)
T PLN02244 275 KTE 277 (340)
T ss_pred Eee
Confidence 654
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.53 E-value=7.8e-14 Score=142.43 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=100.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||||||+|.++..+++.|.+|+| +|.++.+++.++.+ + .+.+++++++.+++.+++||+|++..+++|+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~~V~G--ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGATVTG--VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 8999999999999999998999998 78889998888643 1 3778899999999888999999999999888
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------C--------CCHHHHHHHHHHcCceeeEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------K--------KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------~--------~~~~~~~~~i~~~Gf~~l~W 444 (467)
.+. ..++.++.++|||||.+++.++... . -..+++.+++++.||+....
T Consensus 212 ~d~---~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 212 ANP---AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 877 5899999999999999999864321 0 13468889999999866544
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=7.4e-14 Score=136.70 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=87.0
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
.+|||+|||+|.++..+++.+..+++ +|+++.|++.+.++.. ..++++|++.+|+++++||+|+++.++ ||.++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~~--~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d-- 118 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGSQVTA--LDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGN-- 118 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCCeEEE--EECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCC--
Confidence 38999999999999999988988988 7788999999887753 578899999999999999999999999 77655
Q ss_pred HHHHHHHHHhccCCCcEEEEEeccc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
...++.++.|+|||||.++++++..
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 4789999999999999999987653
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.52 E-value=1.2e-13 Score=124.20 Aligned_cols=127 Identities=24% Similarity=0.378 Sum_probs=95.0
Q ss_pred HHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceE
Q 012235 305 FLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 305 ~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
..+..+.+ ..++. +|||||||+|.++..+++.+.++++ +|+++.+++. ........+....+.++++||+|
T Consensus 11 ~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~g--~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 11 DLLERLLPRLKPGK--RVLDIGCGTGSFLRALAKRGFEVTG--VDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp HHHHHHHTCTTTTS--EEEEESSTTSHHHHHHHHTTSEEEE--EESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEE
T ss_pred HHHHHHhcccCCCC--EEEEEcCCCCHHHHHHHHhCCEEEE--EECCHHHHhh----hhhhhhhhhhhhhhccccchhhH
Confidence 34555664 44444 8999999999999999999999998 6777777766 22333333334555678999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceee
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l 442 (467)
+|+.+++|+.+. ..++.++.++|||||++++.++..... +.+.+..++++.||+.+
T Consensus 83 ~~~~~l~~~~d~---~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 83 ICNDVLEHLPDP---EEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp EEESSGGGSSHH---HHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hhHHHHhhcccH---HHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 999999777654 799999999999999999988764210 23467777777777655
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=135.79 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=97.7
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc-cCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp-f~d~sFDlVis~~~L~ 390 (467)
.+|||+|||+|.++..+++.+..|++ +|+++.|++.++++ + .+.++++++..++ +.+++||+|++..+++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~~v~~--vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~ 123 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGHQVIL--CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE 123 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence 38999999999999999999999998 78888998887653 2 3678888887764 5678999999999996
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------------------CCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------------------KKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------------------~~~~~~~~~~i~~~Gf 439 (467)
|+.++ ..++.++.++|||||.+++..+... .-..+++.++++..||
T Consensus 124 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 124 WVADP---KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred hhCCH---HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 66555 5899999999999999987643211 0124578889999999
Q ss_pred eeeEEE
Q 012235 440 KKHKWA 445 (467)
Q Consensus 440 ~~l~W~ 445 (467)
+.+.+.
T Consensus 201 ~~~~~~ 206 (255)
T PRK11036 201 QIMGKT 206 (255)
T ss_pred eEeeee
Confidence 887654
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=2.1e-13 Score=134.22 Aligned_cols=129 Identities=13% Similarity=0.169 Sum_probs=99.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.+...++. +|||+|||+|.++..++++ +.+|+| +|+++.|++.+++++ +.++++|++.++ ++++||+|+++
T Consensus 23 ~~l~~~~~~--~vLDlGcG~G~~~~~l~~~~p~~~v~g--vD~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 23 ARVGAERAR--RVVDLGCGPGNLTRYLARRWPGAVIEA--LDSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HhCCCCCCC--EEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEEEe
Confidence 344444554 8999999999999999987 567887 788899999988765 789999988875 56899999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------------------CCCHHHHHHHHH
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------------------KKDLDDYMYMFL 435 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------------------~~~~~~~~~~i~ 435 (467)
.+++|+.+. ..++.++.++|||||.+++..+... -...+.+.++++
T Consensus 97 ~~l~~~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 97 AALQWVPEH---ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred hhhhhCCCH---HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999544433 6899999999999999988532100 012457888888
Q ss_pred HcCceeeEEEE
Q 012235 436 QFRYKKHKWAI 446 (467)
Q Consensus 436 ~~Gf~~l~W~~ 446 (467)
..||....|..
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99997666654
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.50 E-value=4.4e-13 Score=129.26 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=102.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~ 378 (467)
.+.+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++.+|...++++++
T Consensus 38 l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 38 MKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIG--LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3445566665 8999999999999999876 357777 77788888777643 2 36788899988888889
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------------
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------------------- 425 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------------- 425 (467)
+||+|++..++++..+. ..++.++.++|+|||.+++.+...+..
T Consensus 114 ~fD~V~~~~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY---MQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred CccEEEEecccccCCCH---HHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 99999999999555444 589999999999999999876543211
Q ss_pred -------CHHHHHHHHHHcCceeeEEEEcc
Q 012235 426 -------DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 426 -------~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
+.+++.+++++.||+.+....-.
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 12456788999999888665443
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=2.6e-13 Score=128.96 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=86.5
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC--ccEEEccCCCCccCCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL--IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~--i~~~~~d~~~Lpf~d~ 378 (467)
..+.+.+...++. +|||+|||+|.++..|+++|.+|++ +|+|+.+++.+++ .+. +.+.++|...+++ ++
T Consensus 20 ~~l~~~l~~~~~~--~vLDiGcG~G~~a~~La~~g~~V~g--vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~ 94 (197)
T PRK11207 20 SEVLEAVKVVKPG--KTLDLGCGNGRNSLYLAANGFDVTA--WDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DG 94 (197)
T ss_pred HHHHHhcccCCCC--cEEEECCCCCHHHHHHHHCCCEEEE--EeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CC
Confidence 3455566655554 8999999999999999999999999 7788888877653 232 6677888877776 46
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+||+|+++.++ |+.+......++.++.++|||||++++..+
T Consensus 95 ~fD~I~~~~~~-~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 95 EYDFILSTVVL-MFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CcCEEEEecch-hhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 79999999998 555555578999999999999999766443
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=3.7e-13 Score=137.51 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=97.6
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH-------cCCccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL-------RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~-------rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||||||+|.++..+++.|. .|+| +|.++.++..+.. ...+.++.++++.+|+ +++||+|+|..+++|
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~~V~G--iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAKLVVG--IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 899999999999999999875 4777 7777877654321 1237788899999998 889999999999988
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEEEcc
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
..+. ..++.++.++|+|||.+++.++....+ ....+.+++++.||+.++.....
T Consensus 202 ~~dp---~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 202 RRSP---LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred cCCH---HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 7665 589999999999999999876532211 23478899999999988776443
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=1.4e-12 Score=134.14 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=101.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++. +.++++ +|.++.|++.++++ ..+.++.+|.+.+++++++||+|+++.+++|+.+
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~Vtg--VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence 8999999999999888875 467777 77788998888764 2478899999999998999999999999977776
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccC--------------CCCHHHHHHHHHHcCceeeEEEEcc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCN--------------KKDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~--------------~~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
. +.+++++.|+|||||.+++.....+ ....+++.+++++.||+.+.+....
T Consensus 194 ~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 194 P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 6 5799999999999999988653221 1134588999999999998886543
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=7.3e-13 Score=141.45 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=102.8
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceE
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.+.++. +|||||||+|.++..+++. +..|+| +|+|+.+++.+.++. .+.+.++|...+++++++||+|
T Consensus 261 ~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 261 KLDLKPGQ--KVLDVGCGIGGGDFYMAENFDVHVVG--IDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred hcCCCCCC--EEEEEeccCCHHHHHHHHhcCCEEEE--EECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEE
Confidence 34444454 8999999999999999876 778888 777888888876541 3678899998888888999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------CHHHHHHHHHHcCceeeEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+|..++.|+.+. ..++.++.|+|||||.+++.++..... ..+.+.+++++.||..+.+.
T Consensus 337 ~s~~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 337 YSRDTILHIQDK---PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred EECCcccccCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 999999888766 689999999999999999987643221 23467888888999877553
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.46 E-value=6.9e-13 Score=129.32 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=88.9
Q ss_pred CCCCceEEEECCCccHHHHHHhhC--------CCEEEEEecCCCHHHHHHHHHcC---------CccEEEccCCCCccCC
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQ--------NVTIVSTALNLGAPFNEMIALRG---------LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~--------g~~V~gvdiDiS~~~l~~a~~rg---------~i~~~~~d~~~Lpf~d 377 (467)
++...++||++||||..|..+.+. +.+|+. .|++++|+..+++|. .+.|+.+|+++|||++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v--~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTV--LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEE--EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 333348999999999999999876 245776 889999998886652 1678899999999999
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
++||+.+..+.+..|.+. +++++|++|||||||+|.+.+|....
T Consensus 176 ~s~D~yTiafGIRN~th~---~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHI---QKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CcceeEEEecceecCCCH---HHHHHHHHHhcCCCcEEEEEEccccc
Confidence 999999999999888887 68999999999999999998876544
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=9.4e-13 Score=134.09 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=98.5
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHH---H----cCCccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIA---L----RGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~---~----rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
...++. +|||||||+|.++..++..|. .|+| +|.|+.|+.++. . ...+.+...+++.+|.. .+||+|
T Consensus 118 ~~~~g~--~VLDvGCG~G~~~~~~~~~g~~~v~G--iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 118 SPLKGR--TILDVGCGSGYHMWRMLGHGAKSLVG--IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCC--EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 334444 899999999999999998875 5777 778887776532 1 12356777788888764 589999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceee
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l 442 (467)
+|+.+++|+.+. ..++.+++|+|||||.|++.++....+ ....+..++++.||+.+
T Consensus 193 ~s~gvL~H~~dp---~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 193 FSMGVLYHRKSP---LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred EEcchhhccCCH---HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence 999999888766 589999999999999999876533211 23467788999999999
Q ss_pred EEEEccC
Q 012235 443 KWAISPK 449 (467)
Q Consensus 443 ~W~~~~k 449 (467)
+......
T Consensus 270 ~i~~~~~ 276 (314)
T TIGR00452 270 RILDVLK 276 (314)
T ss_pred EEEeccC
Confidence 8765444
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.45 E-value=4e-13 Score=114.49 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=78.2
Q ss_pred eEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccC-CCCccCCCccceEEecc-c
Q 012235 320 IGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLN-QRLPFFDNTMDLIHTTG-F 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~-~~Lpf~d~sFDlVis~~-~ 388 (467)
+|||+|||+|.++..+++ .+.+|++ +|+++.+++.++++ ..+.++++|+ ..... .+.||+|++.. +
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVG--VDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 899999999999999999 6899999 77788888887654 2488999998 33333 45699999999 5
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.++......+.+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5444443456789999999999999999865
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=1.9e-12 Score=128.41 Aligned_cols=129 Identities=19% Similarity=0.297 Sum_probs=100.1
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccc
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFD 381 (467)
..+.++. +|||+|||+|..+..+++. + ..|++ +|+++.+++.++++ + .+.++.++.+.+++++++||
T Consensus 73 ~~~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~g--vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 73 AELKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIG--VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred ccCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEE--ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCcee
Confidence 3466676 9999999999887766654 3 35777 88888998888753 2 36788899999998889999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------CHHHHHHHHHHcCcee
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------DLDDYMYMFLQFRYKK 441 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------~~~~~~~~i~~~Gf~~ 441 (467)
+|+++.+++|+.+. ..++.++.|+|||||.|++.++....+ ..+++.++++..||..
T Consensus 149 ~Vi~~~v~~~~~d~---~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 149 VIISNCVINLSPDK---ERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred EEEEcCcccCCCCH---HHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 99999999555444 589999999999999999976543221 3347888999999987
Q ss_pred eEEEE
Q 012235 442 HKWAI 446 (467)
Q Consensus 442 l~W~~ 446 (467)
+....
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 76543
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.43 E-value=2.7e-13 Score=131.67 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=86.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||-|.++..||+.|..|+| +|+++.+++.++.. +. +++.+...+++....++||+|+|..+++|..+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga~Vtg--iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d 139 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGASVTG--IDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD 139 (243)
T ss_pred eEEEecCCccHhhHHHHHCCCeeEE--ecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC
Confidence 8999999999999999999999999 88889998888743 22 55777788888776689999999999999999
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+ +.+++.+.+.+||||.+++++....
T Consensus 140 p---~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 140 P---ESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred H---HHHHHHHHHHcCCCcEEEEeccccC
Confidence 8 5799999999999999999887643
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.4e-12 Score=123.87 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=93.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sF 380 (467)
.+.+.+...++. +|||+|||+|.++..++++|.+|++ +|+++.|++.++++ +. +.+.+.+....++ +++|
T Consensus 21 ~l~~~~~~~~~~--~vLDiGcG~G~~a~~la~~g~~V~~--iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~f 95 (195)
T TIGR00477 21 AVREAVKTVAPC--KTLDLGCGQGRNSLYLSLAGYDVRA--WDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDY 95 (195)
T ss_pred HHHHHhccCCCC--cEEEeCCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCC
Confidence 344455544444 8999999999999999999999999 67778888766432 32 5566677666665 4689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-----------CCHHHHHHHHHHcCceeeEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-----------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
|+|+++.+++ +.+......++.++.|+|||||++++..+.... -..+++.+.+. +|..+.|.
T Consensus 96 D~I~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 96 DFIFSTVVFM-FLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CEEEEecccc-cCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 9999999994 444444678999999999999997665432211 12335555554 46777776
No 26
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.41 E-value=7.1e-12 Score=118.83 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=107.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEecc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
.+..+.++++||+|||.|.++..|+.+.-.+++ +|+++.+++.+++|- .+.+.+++.... .++++||+|+.+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~Lla--vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLA--VDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEE--EES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEE--EeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh
Confidence 355556779999999999999999999877888 888899999998762 388899987665 4689999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------CCCCHHHHHHHHHHcCceeeEEEEcc-CCCCceEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------NKKDLDDYMYMFLQFRYKKHKWAISP-KSKDEVYLSAL 459 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------~~~~~~~~~~~i~~~Gf~~l~W~~~~-k~~devyl~av 459 (467)
+++.+.+.+.+..++..+...|+|||.+++.++.. +.-..+.+.+++.+. +..+.-.... ...+|-.+.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SSTTSEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCCCCCceEeee
Confidence 99666555668899999999999999999987632 122345778888776 5665444333 35567788889
Q ss_pred eecCCCC
Q 012235 460 LEKPPRA 466 (467)
Q Consensus 460 lqKP~~~ 466 (467)
++||++.
T Consensus 194 ~~~~~~~ 200 (201)
T PF05401_consen 194 FRNPVSA 200 (201)
T ss_dssp EE--SSS
T ss_pred ecCCcCC
Confidence 9999874
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.39 E-value=2.8e-12 Score=128.25 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=90.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cCC---ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RGL---IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg~---i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+.+++|. +|||||||.|.++..++++ |++|+| +.+|+...+.+.+ +|+ +.+...|..+++.
T Consensus 54 ~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~g--itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 54 LCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTG--ITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEE--EES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 34456788888 9999999999999999999 999999 6667776666543 443 6778888776643
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHH
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMF 434 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i 434 (467)
+||.|+|..+++|+... ..+.+++++.++|||||.+++..+..... ....+...+
T Consensus 127 ~fD~IvSi~~~Ehvg~~-~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRK-NYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp S-SEEEEESEGGGTCGG-GHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CCCEEEEEechhhcChh-HHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998643 36789999999999999999865443221 233566667
Q ss_pred HHcCceeeEEEE
Q 012235 435 LQFRYKKHKWAI 446 (467)
Q Consensus 435 ~~~Gf~~l~W~~ 446 (467)
+..||+...|..
T Consensus 206 ~~~~l~v~~~~~ 217 (273)
T PF02353_consen 206 EDAGLEVEDVEN 217 (273)
T ss_dssp HHTT-EEEEEEE
T ss_pred hcCCEEEEEEEE
Confidence 778888777754
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=2.4e-12 Score=126.42 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=81.1
Q ss_pred eEEEECCCccHHHHHHhh----CCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMRE----QNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~----~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|..+..+++ .+.++++ +|+|+.|++.++++ + .+.++++++..+|++ .+|+|+++.+
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~~~~~v~g--vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 899999999999988876 2567888 88899999888654 1 378889998888764 4999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
++| .++.....++.++.++|||||.|++.+.+...
T Consensus 135 l~~-l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 135 LQF-LEPSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred HHh-CCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 944 44444578999999999999999998855433
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=8.1e-12 Score=125.40 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=88.9
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC-ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++.|.+|++ +|.++.+++.+++ .+. +.+...|....++ +++||+|+++.++ |+.+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~a--vD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl-~~l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTA--VDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVL-MFLN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchh-hhCC
Confidence 7999999999999999999999999 7777888776643 233 5666777766555 7889999999999 5555
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCC-----------CCHHHHHHHHHHcCceeeEEE
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNK-----------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
......++.++.++|+|||++++....... -...++.+.+.. |+.+.+.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 555789999999999999997764332211 122356665554 6777664
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=1.1e-12 Score=111.00 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=74.1
Q ss_pred EEEECCCccHHHHHHhhCC-----CEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceEEeccc-c
Q 012235 321 GLDFGVGTGTFAARMREQN-----VTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLIHTTGF-M 389 (467)
Q Consensus 321 VLDIGCGtG~~a~~La~~g-----~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlVis~~~-L 389 (467)
|||+|||+|..+..+++.. ..+++ +|+++.|++.++++. .+.++++|+.++++.+++||+|++... +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~g--vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIG--VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEE--EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEE--EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998773 67777 888899999988754 378999999999998999999999655 7
Q ss_pred ccccchhhHHHHHHHHHhccCCCc
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGG 413 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG 413 (467)
.| .++...+.+++++.++|||||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 55 555567899999999999998
No 31
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=2.8e-12 Score=124.72 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=76.4
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
+|||+|||||.++..+++. +..|+| +|+|+.|++.++++. .+++++++.+|+++++||+|+++++++|+.+.
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~~v~g--vD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--- 126 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKYYVVA--LDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHASDNI--- 126 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCCEEEE--ECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhccCCH---
Confidence 8999999999999999988 678888 889999999988764 56789999999999999999999999665554
Q ss_pred HHHHHHHHhccCCC
Q 012235 399 DFILFDWDRILRPG 412 (467)
Q Consensus 399 ~~~L~el~RvLKPG 412 (467)
+.++.|+.|+|||.
T Consensus 127 ~~~l~e~~RvLkp~ 140 (226)
T PRK05785 127 EKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHhcCc
Confidence 68999999999994
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.36 E-value=3.1e-11 Score=115.79 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=83.7
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
.+...++. +|||+|||+|.++..+++.+ .++++ +|+++.+++.+.++ ..+.++.+|...+++.+++
T Consensus 46 ~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 121 (239)
T PRK00216 46 WLGVRPGD--KVLDLACGTGDLAIALAKAVGKTGEVVG--LDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS 121 (239)
T ss_pred HhCCCCCC--eEEEeCCCCCHHHHHHHHHcCCCCeEEE--EeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence 34444444 89999999999999998875 67777 67777777777653 2367888898888887889
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
||+|+++.+++++.+. ..++.++.++|+|||.+++.++..
T Consensus 122 ~D~I~~~~~l~~~~~~---~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAFGLRNVPDI---DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEecccccCCCH---HHHHHHHHHhccCCcEEEEEEecC
Confidence 9999999999655554 689999999999999998876533
No 33
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.36 E-value=6.9e-12 Score=122.15 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=80.9
Q ss_pred eEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..++++ +.++++ +|+++.|++.++++ + .+.++++|+..++++ .+|+|+++++
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~~p~~~v~g--vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 8999999999999988874 567888 77889999888653 1 367889999888764 4899999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+ |+.++.....++.++.|+|||||.+++.+....
T Consensus 132 l-~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 132 L-QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred h-hhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 9 554444467899999999999999999876553
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.35 E-value=1e-11 Score=119.24 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=95.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||||||+|.++..+++. +.++++ +|+++.+++.+.++ + .+.++..|....|+ +++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~g--id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHG--YTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHH
Confidence 6999999999999999887 467887 66788887777653 2 36788888866666 45899999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
|+.+. ..++.++.++|||||.+++.++.... .....+.+.+++.||..+....
T Consensus 79 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 79 HIKDK---MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred hCCCH---HHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 77654 68999999999999999998764211 1234788899999998887653
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.34 E-value=4.8e-12 Score=114.74 Aligned_cols=96 Identities=26% Similarity=0.422 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHhh-C--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMRE-Q--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~-~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..+++ . +.+++| +|+++.|++.+.++ + .+.++++|+.+++ ++ +.||+|++..+
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~~i~g--vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGAKIIG--VDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTSEEEE--EESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred EEEEecCcCcHHHHHHHHhcCCCCEEEE--EECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 899999999999999994 3 678888 88889999888763 2 3789999999887 55 89999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++|+.+. ..++.++.++|++||.+++.++.
T Consensus 83 l~~~~~~---~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDP---EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGTSHH---HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhccCH---HHHHHHHHHHcCCCcEEEEEECC
Confidence 9555544 58999999999999999998876
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.34 E-value=2.3e-11 Score=116.08 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=86.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sF 380 (467)
..+.+.++. +|||+|||+|.++..+++.. ..+++ +|+++.+++.+.++ ..+.+..+|...+++.+++|
T Consensus 13 ~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~--~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 13 ELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVG--IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEE--EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445566655 89999999999999998762 46777 77778888877665 23678888988888888999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|++..++.|+.+. ..++.++.++|||||.+++.++
T Consensus 89 D~v~~~~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 89 DAVRSDRVLQHLEDP---ARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred eEEEEechhhccCCH---HHHHHHHHHHhcCCcEEEEEec
Confidence 999999999777665 6899999999999999998764
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=7.8e-12 Score=122.80 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEe
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
..+.+.++. +|||||||+|.++..+++. +..|++ +|+++.|++.+.++. .+.++.+|+..+. ++++||+|++
T Consensus 25 ~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~g--vD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 99 (258)
T PRK01683 25 ARVPLENPR--YVVDLGCGPGNSTELLVERWPAARITG--IDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFA 99 (258)
T ss_pred hhCCCcCCC--EEEEEcccCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEE
Confidence 334445554 8999999999999999986 567888 778899999887764 3778889987765 4579999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.++ ||..+ ...++.++.++|||||.+++..
T Consensus 100 ~~~l-~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASL-QWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccCh-hhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 9999 55544 3689999999999999998864
No 38
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=1.1e-11 Score=117.71 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=80.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH----HcCC-ccEEEccCCCCccCCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA----LRGL-IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~rg~-i~~~~~d~~~Lpf~d~sFD 381 (467)
+.+.++..++. ++||+|||.|..+..|+++|..|++ +|.|+.+++.+. +++. +...+.|.....+ ++.||
T Consensus 22 v~~a~~~~~~g--~~LDlgcG~GRNalyLA~~G~~VtA--vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD 96 (192)
T PF03848_consen 22 VLEAVPLLKPG--KALDLGCGEGRNALYLASQGFDVTA--VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-PEEYD 96 (192)
T ss_dssp HHHHCTTS-SS--EEEEES-TTSHHHHHHHHTT-EEEE--EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEE
T ss_pred HHHHHhhcCCC--cEEEcCCCCcHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHhhcCceeEEEEecchhccc-cCCcC
Confidence 44445544444 8999999999999999999999999 666666655443 3443 6777888888776 47899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+|++..++ ++.+.+....++..+...++|||++++.++..
T Consensus 97 ~I~st~v~-~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVF-MFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEEESSG-GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEEEe-ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 99999888 55556567899999999999999999876544
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.32 E-value=2.8e-11 Score=115.76 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=82.1
Q ss_pred ceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|||+|||+|.++..+++.+. .+++ +|+++.+++.+..+. .+.++.+|...+++++++||+|++..+++|..+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~--~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIA--LDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEE--EeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 4899999999999999998854 4566 777888888777653 377889999999988999999999999944434
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
. ..++.++.++|+|||.+++..+..
T Consensus 114 ~---~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 114 L---SQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred H---HHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3 689999999999999999976543
No 40
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=117.21 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=109.3
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEcc-CCCCccCCCccceEEe
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTL-NQRLPFFDNTMDLIHT 385 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d-~~~Lpf~d~sFDlVis 385 (467)
.+++++..+..+-|||||||+|.-+..|.+.|+..+| +|+|+.|++.+.++.. -.++.+| .+.+||.+++||.|++
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiG--vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIG--VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEe--ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEE
Confidence 4566666644558999999999999999999999999 8999999999987543 2566665 5789999999999999
Q ss_pred cccccccc---------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc---eeeEEEEccC
Q 012235 386 TGFMDGWL---------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY---KKHKWAISPK 449 (467)
Q Consensus 386 ~~~L~h~~---------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf---~~l~W~~~~k 449 (467)
..++ +|. +...+..++..++.+|++|+..++.-+..+.++.+.+.....+.|| -.+.|-...|
T Consensus 119 ISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k 193 (270)
T KOG1541|consen 119 ISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTK 193 (270)
T ss_pred eeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccc
Confidence 9888 664 2233456788899999999999998777777777767777777888 4567754444
No 41
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.30 E-value=2.5e-11 Score=116.38 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=82.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
+|||+|||+|.++..|++. +..++| +|+++.|++.++++. .+.+.++++.. |+++++||+|+++.+++|+. +.
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~~~~v~g--iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p~ 121 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLPFKHIYG--VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-PD 121 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-HH
Confidence 7999999999999999886 677888 888999999998753 37788888877 88899999999999998775 44
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+..++.++.|++ ++++++.++..
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 5789999999998 57888877644
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.30 E-value=1.2e-11 Score=132.07 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=99.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCC--CCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQ--RLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~--~Lpf~d~sF 380 (467)
+...+...++. +|||+|||+|.++..+++.+.+|++ +|+++.|++.+.+.. .+.++++|+. .+++++++|
T Consensus 29 il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~g--iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLPPYEGK--SVLELGAGIGRFTGELAKKAGQVIA--LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCCEEEE--EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 33444444444 8999999999999999998888888 778888888765432 3678888875 567888999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~l 442 (467)
|+|+++.+++|+.+ ..+..++.++.|+|||||++++.+...... ....|.+++.+.|+...
T Consensus 105 D~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 105 DLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 99999999965554 346789999999999999999965433221 13478888888777554
No 43
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=5.5e-11 Score=114.42 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=95.2
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------- 374 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------- 374 (467)
+++... ++++. +|||+|||+|.++..++++. ..|+++|++ + +. ....+.++++|+...+
T Consensus 42 ~~~~~~~~~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~--~-~~----~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 42 IQQSDKLFKPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL--P-MD----PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred HHHHhccCCCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEEecc--c-cc----CCCCcEEEecCCCChHHHHHHHHH
Confidence 334444 45665 89999999999999998872 478885554 3 21 1123788999988753
Q ss_pred cCCCccceEEeccccccccchh---------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 375 FFDNTMDLIHTTGFMDGWLDML---------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~---------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+.+++||+|+|+.++ ++.... ..+.++.++.++|||||.|++..+.. ++..++...+++. |..+.+.
T Consensus 113 ~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~-f~~v~~~ 188 (209)
T PRK11188 113 VGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSL-FTKVKVR 188 (209)
T ss_pred hCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhC-ceEEEEE
Confidence 567899999998876 443211 12468999999999999999976543 3344555555544 7777764
Q ss_pred Ecc---CCCCceEEEEE
Q 012235 446 ISP---KSKDEVYLSAL 459 (467)
Q Consensus 446 ~~~---k~~devyl~av 459 (467)
... ....|.|+.+.
T Consensus 189 Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 189 KPDSSRARSREVYIVAT 205 (209)
T ss_pred CCccccccCceeEEEee
Confidence 322 25667888654
No 44
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.30 E-value=6.1e-11 Score=112.57 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=80.9
Q ss_pred eEEEECCCccHHHHHHhhCCC---EEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV---TIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~---~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++... .+++ +|+++.+++.+.++. .+.++.+++..+++.+++||+|+++.+++|.
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~--iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTG--VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEE--EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 899999999999999988743 6777 677788877776643 3778889988888878899999999998555
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+. ..+++++.++|+|||.+++.++..
T Consensus 120 ~~~---~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 120 TDI---QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred ccH---HHHHHHHHHHcCCCcEEEEEEecC
Confidence 544 689999999999999999877644
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=3.8e-11 Score=119.99 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=88.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cCC---ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RGL---IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg~---i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+.+++|. +|||||||.|.++.+++++ |++|+| +++|+++.+.+.+ +|. +.+...|...+ .+
T Consensus 64 ~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~G--vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e 136 (283)
T COG2230 64 ILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVG--VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EE 136 (283)
T ss_pred HHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEE--eeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---cc
Confidence 55667889998 9999999999999999998 899999 6667766655544 453 55666665555 45
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
.||-|+|...++|+... ....++..+.++|+|||.+++.+.....
T Consensus 137 ~fDrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PFDRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ccceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 59999999999888764 3579999999999999999997766654
No 46
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=4.5e-11 Score=120.01 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=94.7
Q ss_pred ceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHH--HHHc--CC-cc-EEE-ccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEM--IALR--GL-IP-LYV-TLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~--a~~r--g~-i~-~~~-~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
++|||||||.|+++.+|+.+|.. |+|+|++ .....+ +.++ +. .. +.. ...+++|. .+.||+|+|..+|+
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~--~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPS--PLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCC--hHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 38999999999999999999874 8885544 432222 1111 11 22 222 35778887 78999999999999
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
|..++ -..|.++...|+|||.+++.+.....+ ....+..++++.||+.++-.-...
T Consensus 194 Hrr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 194 HRRSP---LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred ccCCH---HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 99888 489999999999999999987765443 356889999999999988764443
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=1.6e-10 Score=107.76 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=93.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sF 380 (467)
++...+...++. +|||+|||+|.++..+++.+.++++ +|+++.+++.+.++ + .+.++.+|....+ .++|
T Consensus 10 ~l~~~l~~~~~~--~vLdlG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~f 83 (179)
T TIGR00537 10 LLEANLRELKPD--DVLEIGAGTGLVAIRLKGKGKCILT--TDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKF 83 (179)
T ss_pred HHHHHHHhcCCC--eEEEeCCChhHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcc
Confidence 344444444444 7999999999999999999877888 67778887776543 2 2567777765543 4699
Q ss_pred ceEEeccccccccch------------------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDGWLDM------------------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h~~~~------------------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+|+++..+.+..+. ...+.++.++.|+|||||.+++...... +...+.+.+++.||...
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYE 161 (179)
T ss_pred cEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEE
Confidence 999999877444321 1145789999999999999999765433 23467888888888554
Q ss_pred E
Q 012235 443 K 443 (467)
Q Consensus 443 ~ 443 (467)
.
T Consensus 162 ~ 162 (179)
T TIGR00537 162 I 162 (179)
T ss_pred E
Confidence 3
No 48
>PRK04266 fibrillarin; Provisional
Probab=99.25 E-value=2e-10 Score=111.95 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=90.5
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHH----HHcCCccEEEccCCCC----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMI----ALRGLIPLYVTLNQRL----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a----~~rg~i~~~~~d~~~L----pf~d~sF 380 (467)
+.+.++. +|||+|||+|.++..+++.. ..|++ +|+++.|++.+ +++..+.++.+|.... ++ .++|
T Consensus 68 l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~a--vD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 68 FPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYA--VEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred CCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEE--EECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 6677777 89999999999999999872 46777 77788776644 3344577888887541 22 3569
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec------ccCCCC-HHHHHHHHHHcCceeeEEEEccC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF------FCNKKD-LDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~------~~~~~~-~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
|+|++.... +.....++.++.|+|||||.+++... ...... .+...+.++..||+.+.+.....
T Consensus 143 D~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 143 DVIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred CEEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 999965432 21124578999999999999999422 211111 12456888999999998876544
No 49
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.25 E-value=6.2e-11 Score=113.31 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=94.2
Q ss_pred cccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc
Q 012235 290 KEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL 369 (467)
Q Consensus 290 ~e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d 369 (467)
.+...|-. ...+..|..+....++- .|-|+|||.+.++..+. .+++|.++|+-... -.+..+|
T Consensus 50 ~Qv~~WP~---nPvd~iI~~l~~~~~~~--viaD~GCGdA~la~~~~-~~~~V~SfDLva~n-----------~~Vtacd 112 (219)
T PF05148_consen 50 QQVKKWPV---NPVDVIIEWLKKRPKSL--VIADFGCGDAKLAKAVP-NKHKVHSFDLVAPN-----------PRVTACD 112 (219)
T ss_dssp HHHCTSSS----HHHHHHHHHCTS-TTS---EEEES-TT-HHHHH---S---EEEEESS-SS-----------TTEEES-
T ss_pred HHHhcCCC---CcHHHHHHHHHhcCCCE--EEEECCCchHHHHHhcc-cCceEEEeeccCCC-----------CCEEEec
Confidence 55567755 45666666555443333 89999999999997764 56789997664321 3588899
Q ss_pred CCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC
Q 012235 370 NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 370 ~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
+.++|++++++|+|++..+| .-.+ +..++.|+.|+|||||.|+|.+....-++.+.+.+.++.+||+...-...
T Consensus 113 ia~vPL~~~svDv~VfcLSL-MGTn---~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~-- 186 (219)
T PF05148_consen 113 IANVPLEDESVDVAVFCLSL-MGTN---WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES-- 186 (219)
T ss_dssp TTS-S--TT-EEEEEEES----SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE----
T ss_pred CccCcCCCCceeEEEEEhhh-hCCC---cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC--
Confidence 99999999999999998888 3333 36899999999999999999987776667789999999999988764332
Q ss_pred CCCceEEEEEeecC
Q 012235 450 SKDEVYLSALLEKP 463 (467)
Q Consensus 450 ~~devyl~avlqKP 463 (467)
+..|....+.|.
T Consensus 187 --n~~F~~f~F~K~ 198 (219)
T PF05148_consen 187 --NKHFVLFEFKKI 198 (219)
T ss_dssp --STTEEEEEEEE-
T ss_pred --CCeEEEEEEEEc
Confidence 233444455554
No 50
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.24 E-value=1.2e-10 Score=112.49 Aligned_cols=100 Identities=13% Similarity=0.004 Sum_probs=81.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH-cC-----------------CccEEEccCCCCccC-CCcc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RG-----------------LIPLYVTLNQRLPFF-DNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-rg-----------------~i~~~~~d~~~Lpf~-d~sF 380 (467)
+|||+|||.|..+..|+++|.+|+| +|+|+.+++.++. .+ .++++++|+..++.. .+.|
T Consensus 37 rvLd~GCG~G~da~~LA~~G~~V~g--vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQGHRVLG--VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred eEEEeCCCchhHHHHHHhCCCeEEE--EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 8999999999999999999999999 8888888887533 11 267789998887643 4679
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
|.|+...++.|+.+. ..+..+..+.++|||||++++.++..
T Consensus 115 D~i~D~~~~~~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 115 DAVYDRAALIALPEE-MRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CEEEechhhccCCHH-HHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 999998888666544 46789999999999999877766543
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=6.1e-11 Score=129.73 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=86.7
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCc--cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLP--FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lp--f~d~s 379 (467)
.+....++. +|||+|||+|.++..+++. +..++| +|+++.|++.++++ + .+.++++|+..+| +++++
T Consensus 412 ~i~d~~~g~--rVLDIGCGTG~ls~~LA~~~P~~kVtG--IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 412 IILDYIKGD--TIVDVGAGGGVMLDMIEEETEDKRIYG--IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HHhhhcCCC--EEEEeCCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC
Confidence 344545555 8999999999999888875 567877 88889999888654 1 2566888988887 78899
Q ss_pred cceEEecccccccc----------chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 380 MDLIHTTGFMDGWL----------DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 380 FDlVis~~~L~h~~----------~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
||+|+++.++++|. +...+..+++++.|+|||||.+++.+...
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 99999999985553 12346789999999999999999987543
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.22 E-value=2.2e-10 Score=111.13 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=76.3
Q ss_pred ceEEEECCCccHHHHHHhh----CC--CEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMRE----QN--VTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~----~g--~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..|++ .| .+++| +|+++.|++.++++. .+.+.+.+...++..+++||+|+++.++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTA--IDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 3899999999999888875 24 46777 889999999887652 3667777777777778899999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+.++ ....++.++.|+++ |.+++.++
T Consensus 140 hh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 140 HHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 776654 35689999999998 55555543
No 53
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.22 E-value=1.5e-11 Score=120.61 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=79.2
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--------C----ccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--------L----IPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--------~----i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
++|||+|||+|.++..|++.|.+|+| +|.++.|++.|++.. . +.+.+.+.+.+ .+.||.|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~G--ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTG--IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEe--ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 47999999999999999999999999 889999999887531 1 22334444444 3559999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+++|..++ ..++..+.+.|||||.+++++...
T Consensus 166 evleHV~dp---~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHVKDP---QEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHhCH---HHHHHHHHHHhCCCCceEeeehhh
Confidence 999999887 589999999999999999987543
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.22 E-value=8.6e-11 Score=122.88 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.+.+.++. +|||||||+|.++..+++. +.+|++ +|+|+.+++.+.++. .+.+...|...+ +++||.
T Consensus 159 l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~g--iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 159 ICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVG--VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred HHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEE--EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCE
Confidence 33445667776 8999999999999999976 788888 788899998887653 255666776554 578999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|++..+++|.... .++.++.++.++|||||.+++.++.
T Consensus 232 Ivs~~~~ehvg~~-~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 232 IVSVGMFEHVGPK-NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred EEEeCchhhCChH-HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 9999999666433 3578999999999999999997654
No 55
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=2.7e-10 Score=115.09 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=80.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d 377 (467)
+.+.+.+.++. +|||||||+|.++..++++. .++++ +|. +.+++.+.+ .+ .+.++.+|+...++++
T Consensus 141 l~~~~~~~~~~--~vlDiG~G~G~~~~~~~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 141 LLEEAKLDGVK--KMIDVGGGIGDISAAMLKHFPELDSTI--LNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHcCCCCCC--EEEEeCCchhHHHHHHHHHCCCCEEEE--Eec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 44445555554 89999999999999999884 55666 454 466665543 23 3778899987666543
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+|+|+...++++|.+. ....+++++.++|||||.+++.++..
T Consensus 216 --~D~v~~~~~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 216 --ADAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred --CCEEEeEhhhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 6999999999666554 34689999999999999999987644
No 56
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.19 E-value=2.9e-10 Score=107.46 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=91.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-C-ccCCCccceEEeccccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-L-PFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-L-pf~d~sFDlVis~~~L~ 390 (467)
.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+..++ +.++++++.. + ++++++||+|+++.+++
T Consensus 12 ~~~~--~iLDiGcG~G~~~~~l~~~~~~~~~g--iD~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 12 PPGS--RVLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCC--EEEEeCCCCCHHHHHHHhccCCcEEE--EeCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 3444 8999999999999999765 556666 788899988887665 6788888765 4 36788999999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecc-------------------------------cCCCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFF-------------------------------CNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-------------------------------~~~~~~~~~~~~i~~~Gf 439 (467)
|..+. ..+++++.|+++++ ++..+. ..-...+++.++++..||
T Consensus 87 ~~~d~---~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 87 ATRNP---EEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCcCH---HHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 66554 57899999887753 222100 001134588899999999
Q ss_pred eeeEEEEccC
Q 012235 440 KKHKWAISPK 449 (467)
Q Consensus 440 ~~l~W~~~~k 449 (467)
+.+.......
T Consensus 161 ~v~~~~~~~~ 170 (194)
T TIGR02081 161 RILDRAAFDV 170 (194)
T ss_pred EEEEEEEecc
Confidence 9887665543
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.19 E-value=8.6e-11 Score=112.25 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=84.2
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccC-CCCc--cCCCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLN-QRLP--FFDNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~-~~Lp--f~d~sFDlVis~~ 387 (467)
.+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ + .+.++++|+ +.++ +++++||+|++++
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~g--VD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIG--IEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEE--EEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 38999999999999999876 456777 77788888777542 2 377899998 7776 7788999999987
Q ss_pred ccccccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 388 FMDGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 388 ~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
.. +|... ...+.++.++.++|||||.|++.+. .......+.+.++..|+
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGG 174 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCcc
Confidence 65 34221 0125789999999999999998542 11122255566666654
No 58
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.17 E-value=9.8e-11 Score=116.55 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=77.4
Q ss_pred ceEEEECCCccH----HHHHHhhC-------CCEEEEEecCCCHHHHHHHHHc---------------------------
Q 012235 319 RIGLDFGVGTGT----FAARMREQ-------NVTIVSTALNLGAPFNEMIALR--------------------------- 360 (467)
Q Consensus 319 r~VLDIGCGtG~----~a~~La~~-------g~~V~gvdiDiS~~~l~~a~~r--------------------------- 360 (467)
.+|+|+|||+|. ++..+++. +..|+| +|+++.|++.|++.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g--~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILA--TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEE--EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 489999999995 55555553 356777 77888999888652
Q ss_pred ------CCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 361 ------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 361 ------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+.+.|+...++++++||+|+|..+++|+.+ .....++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1367888898888877899999999999966643 345789999999999999999954
No 59
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.17 E-value=6.3e-12 Score=105.48 Aligned_cols=89 Identities=22% Similarity=0.384 Sum_probs=53.6
Q ss_pred EEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCc-c-CCCccceEEecccccc
Q 012235 322 LDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLP-F-FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 322 LDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lp-f-~d~sFDlVis~~~L~h 391 (467)
||||||+|.++..+.+. +.++++ +|+|+.|++.++++ .. ............ . ..++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~--~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTG--VDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEE--EESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999988 667777 67777777544432 22 223333322221 1 1269999999999966
Q ss_pred ccchhhHHHHHHHHHhccCCCcEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~L 415 (467)
+ ++ ++.++..+.++|||||.|
T Consensus 79 l-~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L-ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---HHHHHHHHTTT-TSS-EE
T ss_pred h-hh--HHHHHHHHHHHcCCCCCC
Confidence 6 33 479999999999999986
No 60
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.17 E-value=2.6e-10 Score=109.57 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=90.9
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.+|||+|||+|.++..+++.+..++| +|+++.|++.++++ + .+.+.++|+..++ ++||+|++..++.|
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~~v~g--vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGAIVKA--VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 38999999999999999999888888 77788888877653 1 3678888887765 78999999999977
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEeccc------------CC---------CCHHHHHHHHHHcCceeeEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFC------------NK---------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~------------~~---------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+... .+..++.++.+++++++++.+..... .. ...+++.++++..||..+.-.
T Consensus 132 ~~~~-~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 132 YPAS-DMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred CCHH-HHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 7543 36789999999999877766532110 00 023467778888888776543
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.15 E-value=3e-10 Score=107.02 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=78.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++.. +.+|++ +|.++.|++.+.+ .+ .+.++.+|+..++ .+++||+|++.. + +
T Consensus 45 ~vLDiGcGtG~~s~~la~~~~~~~V~~--iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-~ 119 (181)
T TIGR00138 45 KVIDIGSGAGFPGIPLAIARPELKLTL--LESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-A 119 (181)
T ss_pred eEEEecCCCCccHHHHHHHCCCCeEEE--EeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-h
Confidence 8999999999999988765 356777 6777776665532 23 3788899988874 367999999976 3 2
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH---cCceeeE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ---FRYKKHK 443 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~---~Gf~~l~ 443 (467)
+ +..++..+.++|+|||.+++... .....++....++ .|+..+.
T Consensus 120 --~---~~~~~~~~~~~LkpgG~lvi~~~---~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 120 --S---LNVLLELTLNLLKVGGYFLAYKG---KKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred --C---HHHHHHHHHHhcCCCCEEEEEcC---CCcHHHHHHHHHhhhhcCceEee
Confidence 1 34678889999999999998642 2222344444444 6776654
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.15 E-value=1.3e-09 Score=103.28 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=82.4
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cCC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RGL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|..+..++.. +.+|++ +|.++.|++.+.+ .+. +.++.+++..++. +++||+|+++...
T Consensus 48 ~VLDiGcGtG~~al~la~~~~~~~V~g--iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~~-- 122 (187)
T PRK00107 48 RVLDVGSGAGFPGIPLAIARPELKVTL--VDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAVA-- 122 (187)
T ss_pred eEEEEcCCCCHHHHHHHHHCCCCeEEE--EeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcccc--
Confidence 8999999999999988864 677888 7777777776653 232 7888999888877 7899999997532
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+ ++.++.++.++|||||.+++.... .....+.+..+..|...
T Consensus 123 --~---~~~~l~~~~~~LkpGG~lv~~~~~---~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 123 --S---LSDLVELCLPLLKPGGRFLALKGR---DPEEEIAELPKALGGKV 164 (187)
T ss_pred --C---HHHHHHHHHHhcCCCeEEEEEeCC---ChHHHHHHHHHhcCceE
Confidence 1 367999999999999999987543 23335566666667653
No 63
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=2.1e-09 Score=99.58 Aligned_cols=130 Identities=16% Similarity=0.201 Sum_probs=91.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC----ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL----IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~----i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+...++. +|||+|||+|.++..+++++.++++ +|.++.+++.++++ +. +.++++|... ++.++
T Consensus 15 l~~~~~~~~~~--~vLd~G~G~G~~~~~l~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 89 (188)
T PRK14968 15 LAENAVDKKGD--RVLEVGTGSGIVAIVAAKNGKKVVG--VDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGD 89 (188)
T ss_pred HHHhhhccCCC--EEEEEccccCHHHHHHHhhcceEEE--EECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-ccccc
Confidence 33444344554 8999999999999999999888888 66777777766432 21 5677777554 34456
Q ss_pred ccceEEecccccccc------------------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 379 TMDLIHTTGFMDGWL------------------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 379 sFDlVis~~~L~h~~------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+||+|+++..+.+.. ....+..+++++.++|||||.+++..... ...+.+.+++.+.||+
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~~ 167 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGFE 167 (188)
T ss_pred CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCCe
Confidence 899999876553211 01224568999999999999988865432 2334788899999987
Q ss_pred eeE
Q 012235 441 KHK 443 (467)
Q Consensus 441 ~l~ 443 (467)
...
T Consensus 168 ~~~ 170 (188)
T PRK14968 168 AEV 170 (188)
T ss_pred eee
Confidence 553
No 64
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=3.8e-10 Score=109.44 Aligned_cols=98 Identities=14% Similarity=0.028 Sum_probs=78.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH-cC-----------------CccEEEccCCCCccCC-Ccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RG-----------------LIPLYVTLNQRLPFFD-NTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-rg-----------------~i~~~~~d~~~Lpf~d-~sF 380 (467)
+|||+|||.|..+..|+++|.+|+| +|+|+.+++.+.. ++ .+.+.++|+..++..+ +.|
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~a--vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLG--VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEE--EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 8999999999999999999999999 8888888887642 22 2567888888875432 689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+...++.|+. .......+..+.++|+|||++++.++
T Consensus 118 d~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 118 DAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999998886664 44468999999999999997555433
No 65
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=5.6e-10 Score=108.42 Aligned_cols=158 Identities=13% Similarity=0.205 Sum_probs=110.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE--EEEEecCCCHHHHHHHHHcCC-----ccEEEccC----CCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT--IVSTALNLGAPFNEMIALRGL-----IPLYVTLN----QRLP 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~--V~gvdiDiS~~~l~~a~~rg~-----i~~~~~d~----~~Lp 374 (467)
....++........+||+||||.|.....+.+...+ ..-+..|.|+.+++...++.. +...+.|+ ..-|
T Consensus 60 Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 60 EFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCC
Confidence 344555443332237899999999988888876322 333449999999998876532 22222221 1235
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CH
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DL 427 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~ 427 (467)
...+++|+|++.++|+...+. ....++.++.++|||||.+++-++...+- +.
T Consensus 140 ~~~~svD~it~IFvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~ 218 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTE 218 (264)
T ss_pred CCcCccceEEEEEEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccH
Confidence 678999999999999665554 46899999999999999999987654321 24
Q ss_pred HHHHHHHHHcCceeeEEEEccC---------CCCceEEEEEeecCC
Q 012235 428 DDYMYMFLQFRYKKHKWAISPK---------SKDEVYLSALLEKPP 464 (467)
Q Consensus 428 ~~~~~~i~~~Gf~~l~W~~~~k---------~~devyl~avlqKP~ 464 (467)
+++.+++.+.||..++-.+... ....+|+.++++||.
T Consensus 219 eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 219 EELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred HHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 5888899999996554432221 455679999999984
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.12 E-value=9.9e-10 Score=106.19 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=90.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc-cCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP-FFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h~~ 393 (467)
+|||||||+|.++..+++.+..+++ +|+++.+++.+.++ +. +.+...+...++ ..++.||+|++..++.|..
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~~v~~--iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~ 128 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGADVTG--IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP 128 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCCeEEE--EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence 8999999999999999998888888 66677777766543 22 556677766654 3457999999999997766
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCC---------------------------CCHHHHHHHHHHcCceeeEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------------------------KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------------------------~~~~~~~~~i~~~Gf~~l~W 444 (467)
+. ..++..+.++|+|||.+++..+.... -..+++.+++++.||..+.-
T Consensus 129 ~~---~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 129 DP---ASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CH---HHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 55 57899999999999999987542110 02346788888999976643
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=6.5e-10 Score=106.38 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=74.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~ 376 (467)
+.+.+.+.++. +|||+|||+|..+..+++. +.+|++ +|+++.+++.++++ + .+.++.+|.......
T Consensus 64 ~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~--iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 64 MCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYT--VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 44555666666 8999999999999888875 357888 77777777766542 3 267888888765445
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.++||+|++..++.+ +..++.++|+|||.+++..
T Consensus 140 ~~~fD~Ii~~~~~~~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAAST---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence 679999999988743 3357889999999998843
No 68
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.09 E-value=2.1e-09 Score=101.04 Aligned_cols=136 Identities=22% Similarity=0.302 Sum_probs=85.4
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCCcc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDNTM 380 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~sF 380 (467)
.+.++. +|||+|||+|.++..++++. ..++++|++ +.+ ....+.++.+|..+.+ +++++|
T Consensus 29 ~i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis--~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 29 LIKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ--PMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred ccCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEecc--ccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 456666 89999999999999888762 358885554 432 1223677777776543 456789
Q ss_pred ceEEecccc--------ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE---EccC
Q 012235 381 DLIHTTGFM--------DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA---ISPK 449 (467)
Q Consensus 381 DlVis~~~L--------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~---~~~k 449 (467)
|+|++..+. .|....+..+.++.++.++|+|||.+++..+ ..+....+...++.. |....-. .+..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~--~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~ 176 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF--QGEEIDEYLNELRKL-FEKVKVTKPQASRK 176 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc--cCccHHHHHHHHHhh-hceEEEeCCCCCCc
Confidence 999996542 1211112246789999999999999998643 233444555555443 4332221 2222
Q ss_pred CCCceEEEEE
Q 012235 450 SKDEVYLSAL 459 (467)
Q Consensus 450 ~~devyl~av 459 (467)
.+.|.|+.++
T Consensus 177 ~~~~~~~~~~ 186 (188)
T TIGR00438 177 RSAEVYIVAK 186 (188)
T ss_pred ccceEEEEEe
Confidence 4557787653
No 69
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=3.4e-10 Score=107.73 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=79.0
Q ss_pred eEEEECCCccHHHHHHh-hCCCEEEEEecCCCHHHHHHHHHc-----C-Ccc-EEEccCCCCc-cCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMR-EQNVTIVSTALNLGAPFNEMIALR-----G-LIP-LYVTLNQRLP-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La-~~g~~V~gvdiDiS~~~l~~a~~r-----g-~i~-~~~~d~~~Lp-f~d~sFDlVis~~~L~ 390 (467)
.||++|||||..-...- ..+..|++ +|.++.|.+.+.++ . .+. +++++.+++| .+++++|.|++.+++-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~--lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTC--LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEE--eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 58999999997655544 34788998 77888887766432 1 144 8899999999 8899999999999995
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
...+. .+.|+++.|+|||||.+++.+.....
T Consensus 157 Sve~~---~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 157 SVEDP---VKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ccCCH---HHHHHHHHHhcCCCcEEEEEeccccc
Confidence 44444 79999999999999999997655433
No 70
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.09 E-value=5.7e-10 Score=106.88 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=87.4
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+.|.|+|||+|..+..|+++ +..++| +|.|.+|++.|+.+.. ..|..+|+..+. ++..+|+++++.++ ||.+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~G--iDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvl-qWlp 106 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITG--IDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVL-QWLP 106 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEee--ccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhh-hhcc
Confidence 458999999999999999999 677777 9999999999988865 889999988875 46789999999999 9987
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+. ..+|..+...|.|||.|.+.-+....
T Consensus 107 dH--~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 107 DH--PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred cc--HHHHHHHHHhhCCCceEEEECCCccC
Confidence 74 68999999999999999987654433
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.09 E-value=1.2e-09 Score=102.62 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.++. +|||+|||+|.++..+++++ ..+++ +|+++.+++.+.++ + .+.++.++.. .++ +++|
T Consensus 25 ~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~ 98 (187)
T PRK08287 25 SKLELHRAK--HLIDVGAGTGSVSIEAALQFPSLQVTA--IERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKA 98 (187)
T ss_pred HhcCCCCCC--EEEEECCcCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCC
Confidence 445555555 89999999999999998873 57777 67777777766542 2 2667777753 233 4689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
|+|++.....+ +..++.++.++|+|||++++..... ++...+.+.+++.||+.+..
T Consensus 99 D~v~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 99 DAIFIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred CEEEECCCccC------HHHHHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCCCcceE
Confidence 99999876421 3468899999999999998854322 33457788899999865543
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.09 E-value=1.8e-09 Score=92.88 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=74.7
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-CccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPFFDN 378 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf~d~ 378 (467)
.+.+.+.++. +|||+|||+|.++..++++ +..+++ +|.++.+++.++++ + .+.++.++... ++...+
T Consensus 12 ~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 12 LSKLRLRPGD--VLWDIGAGSGSITIEAARLVPNGRVYA--IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCceEEE--EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 3444555555 8999999999999999987 356777 77778877776532 2 35666777654 333456
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+||.|++.....+ ...++.++.++|||||.|++..
T Consensus 88 ~~D~v~~~~~~~~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGGL------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcchh------HHHHHHHHHHHcCCCCEEEEEe
Confidence 8999999776521 3578999999999999999854
No 73
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.08 E-value=1.4e-09 Score=102.98 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-Cc-cCCCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LP-FFDNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lp-f~d~sFDlVis~~~L 389 (467)
+.++. +|||+|||.|.+...|.+. +++..| ++++++.+..+.++| ++++++|++. ++ |++++||.|+.+.++
T Consensus 11 I~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~G--vEid~~~v~~cv~rG-v~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 11 IEPGS--RVLDLGCGDGELLAYLKDEKQVDGYG--VEIDPDNVAACVARG-VSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred cCCCC--EEEecCCCchHHHHHHHHhcCCeEEE--EecCHHHHHHHHHcC-CCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 45666 8999999999999999874 666777 667777888888888 6789988654 43 889999999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------------------------------CCCCHHHHHHHHHHcC
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------------------------------NKKDLDDYMYMFLQFR 438 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------------------------------~~~~~~~~~~~i~~~G 438 (467)
.+...+ +.+|.|+.|+- ...+++-+.. +--...++.++.++.|
T Consensus 86 Q~~~~P---~~vL~EmlRVg---r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 86 QAVRRP---DEVLEEMLRVG---RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HhHhHH---HHHHHHHHHhc---CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 877766 58899998874 4545542211 0003568888999999
Q ss_pred ceeeEEEEccC
Q 012235 439 YKKHKWAISPK 449 (467)
Q Consensus 439 f~~l~W~~~~k 449 (467)
++.++......
T Consensus 160 i~I~~~~~~~~ 170 (193)
T PF07021_consen 160 IRIEERVFLDG 170 (193)
T ss_pred CEEEEEEEEcC
Confidence 98887766554
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.08 E-value=1.4e-09 Score=107.08 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=86.1
Q ss_pred eEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|||+|||+|.++..+++.|.. |++ +|+++.+++.++++. .+. +...++..+.+||+|+++....
T Consensus 122 ~VLDiGcGsG~l~i~~~~~g~~~v~g--iDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKLGAKKVLA--VDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH-----
Confidence 8999999999999988888765 777 677788887776541 121 1111222223799999976431
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
.+..++.++.++|||||+++++.+.. ++.+.+.+.+++.||+...-.. .+-|...+++|+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~-----~~~W~~~~~~~~ 250 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVLE-----RGEWVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEEE-----eCCEEEEEEEeC
Confidence 13578899999999999999987653 3345778888899998765322 122555667764
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=3.9e-09 Score=108.93 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=89.3
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHH----cCC-ccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIAL----RGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++++ ..|++ +|+++.+++.+++ .+. ..++.+|... ..++.||+|+++..+ |.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~--vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPF-H~ 273 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTL--SDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPF-HD 273 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCc-cC
Confidence 79999999999999999874 46777 7777888877754 222 3455566543 236789999999988 54
Q ss_pred c---chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecCCC
Q 012235 393 L---DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPR 465 (467)
Q Consensus 393 ~---~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP~~ 465 (467)
. .....+.++.++.++|||||.|+++.-... .|.+.+++. |....... ++..-..+.+..+|+.+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l-----~y~~~l~~~-Fg~~~~la--~~~~f~v~~a~~~~~~~ 341 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL-----PYPDLLDET-FGSHEVLA--QTGRFKVYRAIMTRQAK 341 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC-----ChHHHHHHH-cCCeEEEE--eCCCEEEEEEEccCcCC
Confidence 2 223357899999999999999988653221 244555554 55554433 22333455566666543
No 76
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.07 E-value=1.9e-10 Score=110.87 Aligned_cols=144 Identities=18% Similarity=0.224 Sum_probs=109.1
Q ss_pred CCcChHHHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCc--
Q 012235 299 RSVPVDFLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLP-- 374 (467)
Q Consensus 299 ~~~~~d~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lp-- 374 (467)
-++..+..+.+++. ...+..+++||+|||||..+..|..+....+| +|+|.+|++.+.+++. -.+.++++..+-
T Consensus 106 L~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltG--vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~ 183 (287)
T COG4976 106 LGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTG--VDISENMLAKAHEKGLYDTLYVAEAVLFLED 183 (287)
T ss_pred hcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccC--CchhHHHHHHHHhccchHHHHHHHHHHHhhh
Confidence 34455566666665 44555789999999999999999988778888 8999999999999987 345566655432
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCcee
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKK 441 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~ 441 (467)
..+..||+|++..++ .+... ++.++.-+...|+|||.|.++.-....+ ....+..+++..|+..
T Consensus 184 ~~~er~DLi~AaDVl-~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 184 LTQERFDLIVAADVL-PYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred ccCCcccchhhhhHH-Hhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 457889999999999 44444 5789999999999999999974332222 1236777889999988
Q ss_pred eEEEEc
Q 012235 442 HKWAIS 447 (467)
Q Consensus 442 l~W~~~ 447 (467)
+.-.-.
T Consensus 261 i~~~~t 266 (287)
T COG4976 261 IAIEDT 266 (287)
T ss_pred EEeecc
Confidence 866533
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.06 E-value=2.7e-09 Score=102.51 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=86.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.+..+| ++..+++||+|++..+++|+
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~~~v~~--~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRGAKVVA--SDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcC
Confidence 8999999999999999999888888 77788888887653 1 36677777 34456899999999999777
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecc-------------c-CC-------CCHHHHHHHHHHcCceeeEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFF-------------C-NK-------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~-------------~-~~-------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.+. ....++.++.+.+++++.+.+.... . .. -...++.++++..||+......
T Consensus 141 ~~~-~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 141 PQE-DAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CHH-HHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 654 3678889999987655544332110 0 00 0223677788888887665543
No 78
>PTZ00146 fibrillarin; Provisional
Probab=99.06 E-value=5.4e-09 Score=105.26 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=96.4
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHH----HHHHHHHcCCccEEEccCCC---CccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAP----FNEMIALRGLIPLYVTLNQR---LPFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~----~l~~a~~rg~i~~~~~d~~~---Lpf~d~sF 380 (467)
+.++++. +|||+|||+|.++..+++. + -.|++ +|+++. +++.+..+.++.+++.|+.. +.....+|
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyA--VD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYA--VEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEE--EECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence 3467776 8999999999999999987 2 46888 555554 55666666667788888653 22234689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---CCHHHH----HHHHHHcCceeeEEEEcc-CCCC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---KDLDDY----MYMFLQFRYKKHKWAISP-KSKD 452 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---~~~~~~----~~~i~~~Gf~~l~W~~~~-k~~d 452 (467)
|+|++..+. .+. .+.++.++.++|||||.|+|..-...- .+.++. .+.+++.||+.+.-.... ..++
T Consensus 204 DvV~~Dva~---pdq--~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~ 278 (293)
T PTZ00146 204 DVIFADVAQ---PDQ--ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERD 278 (293)
T ss_pred CEEEEeCCC---cch--HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCC
Confidence 999998753 222 346778999999999999994322211 123322 467888899877655443 3555
Q ss_pred ceEEEEEeecC
Q 012235 453 EVYLSALLEKP 463 (467)
Q Consensus 453 evyl~avlqKP 463 (467)
...+..++..+
T Consensus 279 h~~v~~~~~~~ 289 (293)
T PTZ00146 279 HAVVIGVYRPV 289 (293)
T ss_pred cEEEEEEEcCC
Confidence 55555556544
No 79
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.05 E-value=2.9e-09 Score=109.03 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=92.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sF 380 (467)
+..+....++. +|||+|||+|.++..++..+..++| +|+++.|++.++.+ +. +.+..+|+.++|+.+++|
T Consensus 174 ~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g--~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 174 MVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIG--CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEE--EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 33445566666 8999999999999988888989998 66667777765432 32 578899999999888999
Q ss_pred ceEEecccccc---cc---chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDG---WL---DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h---~~---~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+|+++..... .. .......++.++.|+|||||++++..+... .+.+.++..|| .+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VV 311 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-ch
Confidence 99999754311 00 112246899999999999999988654332 35567888888 44
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=1.1e-09 Score=105.32 Aligned_cols=100 Identities=25% Similarity=0.209 Sum_probs=75.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC---EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNV---TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~---~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.+.++. +|||||||+|.++..|++... .|++ +|+++.+++.++++ + .+.++++|.......
T Consensus 68 ~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~--vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 68 MMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVS--IERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 344566777776 999999999999999988732 4777 67778887776543 3 377888887665444
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.++||+|++..... .+...+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~---------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGP---------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcc---------cccHHHHHhcCcCcEEEEE
Confidence 57899999887652 3445678899999999884
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=1.4e-09 Score=104.64 Aligned_cols=99 Identities=22% Similarity=0.189 Sum_probs=75.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
+.+.+.+.++. +|||||||+|+++..+++. +.+|++ +|+++.+++.++++ + .+.++++|........
T Consensus 68 ~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 68 MCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 44556677776 9999999999999988876 257888 77778887777543 2 3788899987665567
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.||+|++..+.. .....+.+.|||||.+++.
T Consensus 144 ~~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcc---------cchHHHHHhhCCCcEEEEE
Confidence 8999999987763 2334677799999999884
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=1.2e-09 Score=100.74 Aligned_cols=75 Identities=21% Similarity=0.168 Sum_probs=63.8
Q ss_pred ecCCCHHHHHHHHHcC---------CccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 346 ALNLGAPFNEMIALRG---------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 346 diDiS~~~l~~a~~rg---------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
++|+|+.|++.++++. .+.++++|+.++|+++++||+|++.++++++.+. ..+++++.|+|||||.|+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR---LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH---HHHHHHHHHHcCcCeEEE
Confidence 4899999999886431 3789999999999999999999999999656544 689999999999999999
Q ss_pred EEecccC
Q 012235 417 IDRFFCN 423 (467)
Q Consensus 417 I~~~~~~ 423 (467)
+.++..+
T Consensus 79 i~d~~~~ 85 (160)
T PLN02232 79 ILDFNKS 85 (160)
T ss_pred EEECCCC
Confidence 9877543
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=5.8e-09 Score=101.32 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=86.2
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
.+|||+|||+|.++..+++. +..+++ +|+++.+++.+..+ + .+.++.+|... ++++++||+|+++....
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~--iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTA--VDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 37999999999999999987 457777 67778887776542 3 26788888765 45678999999975542
Q ss_pred c------ccch-----------------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 391 G------WLDM-----------------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 391 h------~~~~-----------------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
. +... .....++.++.++|+|||.+++..- ....+.+.+++++.||..+.-
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---ccHHHHHHHHHHhCCCCceEE
Confidence 1 1111 1124678999999999999998542 223347788888999977654
No 84
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.03 E-value=2.9e-09 Score=101.99 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=77.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC-CCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++.+..+++ +|.++.+++.+.++ + .+.+..++...++.. +++||+|++..+++|.
T Consensus 48 ~vLdlG~G~G~~~~~l~~~~~~v~~--iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARLGANVTG--IDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 8999999999999999988888888 66777777766542 2 266777777766644 4789999999999666
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.+. ..++.++.++|+|||.+++...
T Consensus 126 ~~~---~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 126 PDP---QAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CCH---HHHHHHHHHhcCCCcEEEEEec
Confidence 555 6899999999999999988754
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.02 E-value=2e-09 Score=99.98 Aligned_cols=108 Identities=22% Similarity=0.277 Sum_probs=75.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE--EEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT--IVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~--V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d 377 (467)
.+.+.+....+. +|||+|||+|.++..+++++.. |++ +|+++.+++.+.+. +. +.++..|.... .++
T Consensus 22 lL~~~l~~~~~~--~vLDlG~G~G~i~~~la~~~~~~~v~~--vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 22 LLLDNLPKHKGG--RVLDLGCGSGVISLALAKRGPDAKVTA--VDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPD 96 (170)
T ss_dssp HHHHHHHHHTTC--EEEEETSTTSHHHHHHHHTSTCEEEEE--EESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCT
T ss_pred HHHHHHhhccCC--eEEEecCChHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHHhcCcccccccccccccc-ccc
Confidence 344444433444 8999999999999999998666 666 67778887777542 22 56777775442 337
Q ss_pred CccceEEeccccccccch---hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDM---LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~---~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.||+|+++..+ |.... ...+.++.+..+.|||||.|++..
T Consensus 97 ~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 97 GKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 899999999887 44332 235788999999999999998744
No 86
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.02 E-value=3.8e-09 Score=103.56 Aligned_cols=145 Identities=20% Similarity=0.313 Sum_probs=101.8
Q ss_pred cccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCC
Q 012235 292 KPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ 371 (467)
Q Consensus 292 ~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~ 371 (467)
-..|-. +..+..|.. +...++. ..|-|+|||.+.+|. .....|+++|+-.. .-.++.+|+.
T Consensus 160 V~kWP~---nPld~ii~~-ik~r~~~-~vIaD~GCGEakiA~---~~~~kV~SfDL~a~-----------~~~V~~cDm~ 220 (325)
T KOG3045|consen 160 VKKWPE---NPLDVIIRK-IKRRPKN-IVIADFGCGEAKIAS---SERHKVHSFDLVAV-----------NERVIACDMR 220 (325)
T ss_pred HHhCCC---ChHHHHHHH-HHhCcCc-eEEEecccchhhhhh---ccccceeeeeeecC-----------CCceeecccc
Confidence 345644 345555544 4444443 278999999998876 34467888554321 1367889999
Q ss_pred CCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCC
Q 012235 372 RLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSK 451 (467)
Q Consensus 372 ~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~ 451 (467)
++|.++++.|++++..+| ...+ +..++.|+.|+|||||.++|.+.-..-.+...+.+.+..+||...+-...
T Consensus 221 ~vPl~d~svDvaV~CLSL-Mgtn---~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~---- 292 (325)
T KOG3045|consen 221 NVPLEDESVDVAVFCLSL-MGTN---LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS---- 292 (325)
T ss_pred CCcCccCcccEEEeeHhh-hccc---HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh----
Confidence 999999999999988877 2333 46899999999999999999887665566668999999999976654332
Q ss_pred CceEEEEEeecC
Q 012235 452 DEVYLSALLEKP 463 (467)
Q Consensus 452 devyl~avlqKP 463 (467)
+..|....++|+
T Consensus 293 n~~F~lfefkK~ 304 (325)
T KOG3045|consen 293 NKYFTLFEFKKT 304 (325)
T ss_pred cceEEEEEEecC
Confidence 222444456665
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.01 E-value=5.6e-10 Score=105.84 Aligned_cols=97 Identities=18% Similarity=0.337 Sum_probs=74.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc---cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP---FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp---f~d~sFDlVis~~~ 388 (467)
++||||||+|.++..++++ +..++| +|++..+++.+.++ + .+.++++|+..++ ++++++|.|++++.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~g--vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLG--IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEE--EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 8999999999999999987 456777 77778887776532 2 4788889987654 45679999999886
Q ss_pred cccccchh------hHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDML------LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. +|.... ..+.++.++.|+|||||.|++.+
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 5 554321 11468999999999999998865
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=99.01 E-value=1.6e-08 Score=97.78 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEec
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++ +. +.++.+|.... +++++||+|+++
T Consensus 34 ~~~~~--~vLDlGcG~G~~~~~la~~~~~~v~~--vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGR--RVLDLCTGSGALAVAAAAAGAGSVTA--VDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSN 108 (223)
T ss_pred cCCCC--eEEEecCCHHHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEEC
Confidence 45555 899999999999999998765 7877 66777777765542 32 56777776553 456799999998
Q ss_pred cccccccc------------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 387 GFMDGWLD------------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 387 ~~L~h~~~------------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
.....-.. ...++.++.++.++|||||.+++..... .....+.+.++..||.
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--SGVERTLTRLSEAGLD 178 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--cCHHHHHHHHHHCCCC
Confidence 54321100 1124567889999999999999854322 2344677777777764
No 89
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=6.8e-09 Score=102.23 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=98.1
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc--cCCCccceEEec
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP--FFDNTMDLIHTT 386 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp--f~d~sFDlVis~ 386 (467)
..+|||+|||+|..+..++++ . ..+++ +++.+.+.+.|.+. ..+.++++|...+. ....+||+|+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~--VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVG--VEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEE--EEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 448999999999999999998 3 67777 66667777777643 23889999987765 334579999998
Q ss_pred cccc---------------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc--eeeEEEEccC
Q 012235 387 GFMD---------------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY--KKHKWAISPK 449 (467)
Q Consensus 387 ~~L~---------------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf--~~l~W~~~~k 449 (467)
-... ++.....++..++-..++|||||.+.+... .+...++.+.+.++++ ++++.+....
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---~erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---PERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---HHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 6542 233334467899999999999999998653 3344578888888777 4555555544
Q ss_pred CCC--ceEEEEEe
Q 012235 450 SKD--EVYLSALL 460 (467)
Q Consensus 450 ~~d--evyl~avl 460 (467)
++. -+.+.++.
T Consensus 200 ~k~A~~vLv~~~k 212 (248)
T COG4123 200 GKAANRVLVEAIK 212 (248)
T ss_pred CCcceEEEEEEec
Confidence 332 23444443
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.00 E-value=6e-09 Score=98.98 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=87.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-ccCC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PFFD 377 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf~d 377 (467)
..+.+.++. +|||+|||+|.++..++.. +.+|++ +|.++.+++.++++ + .+.++.+|...+ +..+
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~a--vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYA--VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence 334556666 8999999999999988764 357888 77777777766432 3 356777777653 3334
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc--eeeEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY--KKHKWAI 446 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf--~~l~W~~ 446 (467)
+.||.|++.... ..+..++.++.++|||||.+++... .-+......+.+++.|| +.+.|..
T Consensus 110 ~~~D~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~ 172 (198)
T PRK00377 110 EKFDRIFIGGGS------EKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLEITEVII 172 (198)
T ss_pred CCCCEEEECCCc------ccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeEEEEEeh
Confidence 689999986532 1136789999999999999987443 22344577778888887 3455544
No 91
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.98 E-value=5.9e-09 Score=106.44 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=89.1
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..++++|..|++ +|+++.|++.++++. .+.+..+|...+ +++||+|+|..+
T Consensus 147 ~VLDlGcGtG~~a~~la~~g~~V~g--vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEGAIVSA--SDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 8999999999999999999999988 888999998876542 145666665543 688999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecc-------------cCC---------CCHHHHHHHHHHcCceeeEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-------------CNK---------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-------------~~~---------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
++|+.+.. ...++..+.+ +.+||.++...+. ... ...+++.++++..||+...-..
T Consensus 222 L~H~p~~~-~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 222 LIHYPQDK-ADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREM 299 (315)
T ss_pred EEecCHHH-HHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEE
Confidence 98876653 3456666665 4566654432110 000 0245788899999998653322
Q ss_pred ccCCCCceEEEEEe
Q 012235 447 SPKSKDEVYLSALL 460 (467)
Q Consensus 447 ~~k~~devyl~avl 460 (467)
. .+..|++.++
T Consensus 300 ~---~~~~y~~~l~ 310 (315)
T PLN02585 300 T---ATQFYFSRLL 310 (315)
T ss_pred e---ecceeHHhhh
Confidence 1 2344555444
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.95 E-value=9.6e-09 Score=103.43 Aligned_cols=110 Identities=13% Similarity=0.230 Sum_probs=77.6
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC---ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..+++.|. .|++ +|+++.+++.++++ +. +.+..++ ..+..+++||+|+++....
T Consensus 162 ~VLDvGcGsG~lai~aa~~g~~~V~a--vDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKLGAAKVVG--IDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE- 236 (288)
T ss_pred EEEEeCCChhHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH-
Confidence 899999999999999888764 6888 67777887777653 21 2333333 2234467999999987542
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.+..++.++.++|||||+++++.+.. ++.+.+.+.+++. |+.+
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHHHcc-Ccee
Confidence 13578999999999999999987643 2334566666654 5444
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.9e-08 Score=101.57 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=94.1
Q ss_pred cChHHHHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH---cCCccE-E-EccCCC
Q 012235 301 VPVDFLISDILA--IKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL---RGLIPL-Y-VTLNQR 372 (467)
Q Consensus 301 ~~~d~~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~---rg~i~~-~-~~d~~~ 372 (467)
+....+-.+.+. ..++. +|||+|||+|.++...++.|.. |+|+|+| +.+++.+++ ++.+.. . ......
T Consensus 146 HpTT~lcL~~Le~~~~~g~--~vlDvGcGSGILaIAa~kLGA~~v~g~DiD--p~AV~aa~eNa~~N~v~~~~~~~~~~~ 221 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGK--TVLDVGCGSGILAIAAAKLGAKKVVGVDID--PQAVEAARENARLNGVELLVQAKGFLL 221 (300)
T ss_pred ChhHHHHHHHHHHhhcCCC--EEEEecCChhHHHHHHHHcCCceEEEecCC--HHHHHHHHHHHHHcCCchhhhcccccc
Confidence 344444444443 23444 9999999999999999999876 9996655 555555543 233331 1 111112
Q ss_pred CccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCC
Q 012235 373 LPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSK 451 (467)
Q Consensus 373 Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~ 451 (467)
+.... +.||+|++|-.- +. +..+..++.+.|||||+++++...... .+.+.+.+.+.||........
T Consensus 222 ~~~~~~~~~DvIVANILA----~v--l~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~~---- 289 (300)
T COG2264 222 LEVPENGPFDVIVANILA----EV--LVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLER---- 289 (300)
T ss_pred hhhcccCcccEEEehhhH----HH--HHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEec----
Confidence 22333 699999998733 12 357889999999999999998865443 446778888888887766542
Q ss_pred CceEEEEEeec
Q 012235 452 DEVYLSALLEK 462 (467)
Q Consensus 452 devyl~avlqK 462 (467)
++ |...+.+|
T Consensus 290 ~e-W~~i~~kr 299 (300)
T COG2264 290 EE-WVAIVGKR 299 (300)
T ss_pred CC-EEEEEEEc
Confidence 23 44445555
No 94
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.94 E-value=2.2e-09 Score=92.23 Aligned_cols=99 Identities=24% Similarity=0.275 Sum_probs=74.2
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
+|||+|||+|.++..+++.+ .++++ +|+++.+++.++.+ ..+.++++|...+. +.+++||+|+++-..
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~g--vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTG--VDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEE--EESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEE--EEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 79999999999999999998 88888 55556666665542 23789999987776 778999999999877
Q ss_pred ccccc-----hhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 390 DGWLD-----MLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 390 ~h~~~-----~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..... ......++.++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 43211 11246789999999999999988653
No 95
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=3.4e-08 Score=104.78 Aligned_cols=154 Identities=22% Similarity=0.216 Sum_probs=100.7
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc--c
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP--F 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp--f 375 (467)
..+...+...++. +|||+|||+|..+..+++.+ ..|++ +|.++.+++.++++ +. +.++++|+..++ +
T Consensus 234 ~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a--~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 234 QLAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVA--LDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 3455567777776 89999999999999999874 46777 77778877776543 32 567888887654 3
Q ss_pred CCCccceEEeccccc-----------ccc-chh-------hHHHHHHHHHhccCCCcEEEEEecccCC-CCHHHHHHHHH
Q 012235 376 FDNTMDLIHTTGFMD-----------GWL-DML-------LLDFILFDWDRILRPGGLLWIDRFFCNK-KDLDDYMYMFL 435 (467)
Q Consensus 376 ~d~sFDlVis~~~L~-----------h~~-~~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~-~~~~~~~~~i~ 435 (467)
.+++||.|++...-. .|. ... ....++..+.++|||||.+++++..... ++.+.+...++
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 457899999543211 111 111 1246899999999999999998865543 34445556666
Q ss_pred Hc-CceeeE--------EEEccC-CCCceEEEEEeec
Q 012235 436 QF-RYKKHK--------WAISPK-SKDEVYLSALLEK 462 (467)
Q Consensus 436 ~~-Gf~~l~--------W~~~~k-~~devyl~avlqK 462 (467)
+. +++.+. +.+.+. ...+.++.+.++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 426 (427)
T PRK10901 390 RHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALLIK 426 (427)
T ss_pred hCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEEEE
Confidence 54 344333 333332 2234577777876
No 96
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.93 E-value=1.5e-08 Score=102.63 Aligned_cols=141 Identities=23% Similarity=0.382 Sum_probs=90.1
Q ss_pred ChHHHHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHH----HcCC-ccEEEccCCCC
Q 012235 302 PVDFLISDILA--IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIA----LRGL-IPLYVTLNQRL 373 (467)
Q Consensus 302 ~~d~~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~----~rg~-i~~~~~d~~~L 373 (467)
.......+++. ..++. +|||+|||+|.++...++.|. .|+++|+|. .+++.++ .++. ..+.+.....
T Consensus 146 ~TT~lcl~~l~~~~~~g~--~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~~N~~~N~~~~~~~v~~~~~- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGK--RVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAARENAELNGVEDRIEVSLSED- 220 (295)
T ss_dssp HHHHHHHHHHHHHSSTTS--EEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHHHHHHHTT-TTCEEESCTSC-
T ss_pred HHHHHHHHHHHHhccCCC--EEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHHHHHHHcCCCeeEEEEEecc-
Confidence 33344344443 34454 999999999999999999876 688966664 4444443 3443 2333322222
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCc
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDE 453 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~de 453 (467)
...+.||+|++|-... . +..++..+.++|+|||+|+++.+...+ .+.+.+.+++ ||+.+..... ++
T Consensus 221 -~~~~~~dlvvANI~~~----v--L~~l~~~~~~~l~~~G~lIlSGIl~~~--~~~v~~a~~~-g~~~~~~~~~----~~ 286 (295)
T PF06325_consen 221 -LVEGKFDLVVANILAD----V--LLELAPDIASLLKPGGYLILSGILEEQ--EDEVIEAYKQ-GFELVEEREE----GE 286 (295)
T ss_dssp -TCCS-EEEEEEES-HH----H--HHHHHHHCHHHEEEEEEEEEEEEEGGG--HHHHHHHHHT-TEEEEEEEEE----TT
T ss_pred -cccccCCEEEECCCHH----H--HHHHHHHHHHhhCCCCEEEEccccHHH--HHHHHHHHHC-CCEEEEEEEE----CC
Confidence 3358999999987652 1 356788899999999999998876643 4467777776 8887765431 23
Q ss_pred eEEEEEeec
Q 012235 454 VYLSALLEK 462 (467)
Q Consensus 454 vyl~avlqK 462 (467)
|...+++|
T Consensus 287 -W~~l~~~K 294 (295)
T PF06325_consen 287 -WVALVFKK 294 (295)
T ss_dssp -EEEEEEEE
T ss_pred -EEEEEEEe
Confidence 55556666
No 97
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=2.2e-08 Score=106.46 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=103.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp- 374 (467)
..+...+...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ | .+.++.+|+..++
T Consensus 242 ~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 242 QLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred HHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 3445566777776 8999999999999999876 246777 77778777766542 3 2678888887765
Q ss_pred ---cCCCccceEEecc------ccccccc------hhh-------HHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHH
Q 012235 375 ---FFDNTMDLIHTTG------FMDGWLD------MLL-------LDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYM 431 (467)
Q Consensus 375 ---f~d~sFDlVis~~------~L~h~~~------~~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~ 431 (467)
+..++||.|++.. ++.+.++ ... ...++.++.++|||||+++.++.....++.+ .+.
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 4467899999642 2322111 011 2578999999999999999988776555444 666
Q ss_pred HHHHHc-CceeeEEE--EccC-CCCceEEEEEeecC
Q 012235 432 YMFLQF-RYKKHKWA--ISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 432 ~~i~~~-Gf~~l~W~--~~~k-~~devyl~avlqKP 463 (467)
..+++. +|+..... .-+. ..-+.|+.++++|.
T Consensus 398 ~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 398 QFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred HHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence 677665 45432110 1111 23466888899885
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.93 E-value=4.3e-09 Score=109.83 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=75.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCC--ccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRL--PFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~L--pf~d~sFDlVis~~~L 389 (467)
.+||||||+|.++..++.+ +..++| +|++.++++.+.+ .+ .+.++.+|+..+ .++++++|.|++++..
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iG--IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIG--IEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 8999999999999999988 456777 7777777666643 33 377888888654 4778999999998765
Q ss_pred ccccchhh----HHHHHHHHHhccCCCcEEEEEe
Q 012235 390 DGWLDMLL----LDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 390 ~h~~~~~~----l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.|..... ...++.++.|+|+|||.+.+.+
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6653311 2478999999999999999954
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.1e-08 Score=97.84 Aligned_cols=101 Identities=21% Similarity=0.147 Sum_probs=73.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.+.++. +|||+|||+|.++..+++....+++ +|.++.+++.+.++ + .+.+..+|........++|
T Consensus 70 l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~--vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 70 MTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFS--VERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEE--EeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 34456666666 8999999999999988887667888 66668777766543 2 2677888865432234789
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|++..+.. .+..++.+.|+|||.+++...
T Consensus 146 D~I~~~~~~~---------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAP---------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCch---------hhhHHHHHhcCCCcEEEEEEc
Confidence 9999988763 234567899999999998553
No 100
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.91 E-value=7.5e-09 Score=108.04 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=72.5
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C-----CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G-----LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g-----~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..+++++ .+|++ +|.++.+++.++++ + .+.++.+|.... +++++||+|+|+..
T Consensus 231 ~VLDLGCGtGvi~i~la~~~P~~~V~~--vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKNPQAKVVF--VDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred eEEEEeccccHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 89999999999999999874 57777 77778888777642 1 246666665432 34568999999988
Q ss_pred ccccc---chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWL---DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~---~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+ |.. .......++.++.++|+|||.|+++.
T Consensus 308 f-h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 F-HQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7 432 22334678999999999999999974
No 101
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=9.8e-09 Score=99.89 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=78.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEE-----c--cCCCCccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYV-----T--LNQRLPFFDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~-----~--d~~~Lpf~d~ 378 (467)
.+..+.....+. +.++|+|||+|.-++.+++.-.+|++ .|+++.|++.+.+...+...+ . +...|--.++
T Consensus 23 w~~~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIa--tD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~ 99 (261)
T KOG3010|consen 23 WFKKIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIA--TDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE 99 (261)
T ss_pred HHHHHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhhee--ecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence 334445554443 48999999999777888888778998 788999999988765433322 2 2333333489
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCc-EEEE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG-LLWI 417 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG-~LiI 417 (467)
+.|+|++.-++ ||.+. +.+..++.|+||+.| .+.+
T Consensus 100 SVDlI~~Aqa~-HWFdl---e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 100 SVDLITAAQAV-HWFDL---ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ceeeehhhhhH-Hhhch---HHHHHHHHHHcCCCCCEEEE
Confidence 99999999999 99987 689999999999888 4444
No 102
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.86 E-value=3e-08 Score=96.72 Aligned_cols=100 Identities=12% Similarity=-0.032 Sum_probs=83.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------------------CCccEEEccCCCCccC---CC
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------------------GLIPLYVTLNQRLPFF---DN 378 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------------------g~i~~~~~d~~~Lpf~---d~ 378 (467)
+||+.|||.|.-+.+|+++|+.|+| +|+|+.+++.+.++ ..+.++++|...++.. .+
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~~V~G--vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGVKVIG--IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCCcEEE--EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 8999999999999999999999999 88888888886441 1378999999988642 26
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.||+|+-..++.++.+. ......+.+.++|+|||.+++..+..
T Consensus 124 ~fD~VyDra~~~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 124 VFDIWYDRGAYIALPND-LRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CcCeeeeehhHhcCCHH-HHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 89999999988666544 46899999999999999998877643
No 103
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.86 E-value=6.4e-08 Score=97.44 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=85.5
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..|++ +|+++.+++.++++ + .+.++.+|... ++++++||+|+++-..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~a--vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDA--VDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 38999999999999999987 457777 77788888777643 3 36788888643 2345689999997322
Q ss_pred c------cc------cc----------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 390 D------GW------LD----------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 390 ~------h~------~~----------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
. +. .+ ....+.++.++.++|+|||.+++.... +.+.+.+.+...|| .|..-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~---~~~~~ 272 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPF---TWLEF 272 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCC---ceeee
Confidence 1 00 00 012357789999999999999885532 22467777777665 45433
Q ss_pred cCCCCceE
Q 012235 448 PKSKDEVY 455 (467)
Q Consensus 448 ~k~~devy 455 (467)
....+.+|
T Consensus 273 ~~~~~~~~ 280 (284)
T TIGR03533 273 ENGGDGVF 280 (284)
T ss_pred cCCCcEEE
Confidence 33444343
No 104
>PLN03075 nicotianamine synthase; Provisional
Probab=98.86 E-value=3.3e-08 Score=99.86 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=72.2
Q ss_pred ceEEEECCCccHHHHHHhh--C--CCEEEEEecCCCHHHHHHHHH-----c---CCccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMRE--Q--NVTIVSTALNLGAPFNEMIAL-----R---GLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~--~--g~~V~gvdiDiS~~~l~~a~~-----r---g~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
++|+|||||.|.++..+.. . +.++++ +|.++.+++.|++ . ..+.|..+|+...+...+.||+|++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~g--iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHN--FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4899999998866544433 2 456777 6666777666643 1 23889999987764335789999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++++|... ....++..+.+.|+|||++++-..
T Consensus 203 -ALi~~dk~-~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGMDKE-EKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -cccccccc-cHHHHHHHHHHhcCCCcEEEEecc
Confidence 88677422 247999999999999999999764
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.85 E-value=2.7e-08 Score=94.13 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=77.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-CccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf~d 377 (467)
+...+.+.++. +|||+|||+|.++..+++. +..|++ +|.++.+++.+.++ + .+.++.+|+.. ++...
T Consensus 32 l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~--vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 32 LISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIA--IERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 44555555665 8999999999999988764 467888 77778887776542 2 36777777643 22222
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
..+|.|+.... . .++.++.++.++|+|||.+++..... +......+.++.+
T Consensus 108 ~~~d~v~~~~~-----~--~~~~~l~~~~~~LkpgG~li~~~~~~--~~~~~~~~~~~~~ 158 (196)
T PRK07402 108 PAPDRVCIEGG-----R--PIKEILQAVWQYLKPGGRLVATASSL--EGLYAISEGLAQL 158 (196)
T ss_pred CCCCEEEEECC-----c--CHHHHHHHHHHhcCCCeEEEEEeecH--HHHHHHHHHHHhc
Confidence 34576654321 1 24689999999999999999976432 1222344455544
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.85 E-value=2.4e-08 Score=80.65 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=72.2
Q ss_pred eEEEECCCccHHHHHHhh-CCCEEEEEecCCCHHHHHHHH---Hc---CCccEEEccCCCCcc-CCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMRE-QNVTIVSTALNLGAPFNEMIA---LR---GLIPLYVTLNQRLPF-FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~---~r---g~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h 391 (467)
+++|+|||.|.++..+++ .+..+++ +|.++.+...+. .. ..+.++..+...... ..++||+|+++.++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTG--VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999999987 4677888 556666665554 11 136777787776653 5678999999999855
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.. ....++..+.+.|+|||.+++.
T Consensus 79 ~~~--~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE--DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh--HHHHHHHHHHHHcCCCCEEEEE
Confidence 322 3578999999999999999875
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=2.3e-08 Score=101.34 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=71.6
Q ss_pred eEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----CC--ccEEEccCCC-CccCCC----ccceEE
Q 012235 320 IGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----GL--IPLYVTLNQR-LPFFDN----TMDLIH 384 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g~--i~~~~~d~~~-Lpf~d~----sFDlVi 384 (467)
+|||+|||+|..+..|++. +.++++ +|+|+.|++.++++ .. +.++++|+.+ +++... ...+++
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~~~~~~~~--iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALRQPARYVP--IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred eEEecCCCcchhHHHHHHhhccCCeEEE--EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 8999999999999999887 477877 88999998887653 12 4567888765 344333 223444
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+..++.++ ++.....+++++.++|+|||.|++..-
T Consensus 144 ~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44566444 454467899999999999999998543
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=1.3e-07 Score=93.37 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++... ..+++ +|+++.+++.++++ ..+.++.+|... ++.+++||+|+++.....
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~~~~v~~--iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERPDAEVTA--VDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 89999999999999999874 66777 67778887777653 136778887643 233579999999754311
Q ss_pred c------cc-----------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 392 W------LD-----------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 392 ~------~~-----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
. .+ ......++.++.++|+|||++++..- ....+.+.+++...||..+.+..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~~~~~~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---YDQGEAVRALLAAAGFADVETRK 262 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---chHHHHHHHHHHhCCCceeEEec
Confidence 0 00 11235678889999999999998442 12234678888889998776643
No 109
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.83 E-value=1.6e-07 Score=93.54 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=86.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.....+...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ + .+.++.+|+..++..
T Consensus 62 ~~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 62 IPPLALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA 137 (264)
T ss_pred HHHHHhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence 344566777776 8999999999999988875 246777 77788877766542 3 266778887777655
Q ss_pred CCccceEEeccc------ccc-------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHH
Q 012235 377 DNTMDLIHTTGF------MDG-------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~~~------L~h-------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~ 436 (467)
.+.||.|++... +.+ |... .....+|.++.+.|||||+++.++.....++.+ ....++++
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 667999996421 111 1110 012468999999999999999988766555444 44444444
No 110
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=1e-07 Score=101.60 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=87.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
....++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ | .+.++.+|+..++ +
T Consensus 241 l~~~~l~~~~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~a--vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 241 LACLLLNPQPGS--TVLDLCAAPGGKSTFMAELMQNRGQITA--VDRYPQKLEKIRSHASALGITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-c
Confidence 444566666666 8999999999988888764 357777 77888887766542 3 2678888887765 4
Q ss_pred CCccceEEec----c--ccc-----ccc-chh-------hHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHH
Q 012235 377 DNTMDLIHTT----G--FMD-----GWL-DML-------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~----~--~L~-----h~~-~~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~ 436 (467)
+++||.|++. . .+. .|. ... ....++.++.++|||||++++++.....++.+ .....+++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 6789999963 1 111 011 111 12368999999999999999998777554433 55556665
Q ss_pred c
Q 012235 437 F 437 (467)
Q Consensus 437 ~ 437 (467)
.
T Consensus 396 ~ 396 (445)
T PRK14904 396 H 396 (445)
T ss_pred C
Confidence 4
No 111
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.81 E-value=1.8e-07 Score=98.48 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=91.5
Q ss_pred hHHHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCc
Q 012235 303 VDFLISDILA-IKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLP 374 (467)
Q Consensus 303 ~d~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lp 374 (467)
.+..++.++. +.++. +|||+|||+|.++..++.. +.++++ +|+++.+++.++++ + .+.++++|.....
T Consensus 238 TE~LVe~aL~~l~~~~--rVLDLGcGSG~IaiaLA~~~p~a~VtA--VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 238 TEHLVEAVLARLPENG--RVWDLGTGSGAVAVTVALERPDAFVRA--SDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHHHhhhccCCCC--EEEEEeChhhHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 3445555544 33343 8999999999999998865 567877 77888888877653 3 3778888875433
Q ss_pred c-CCCccceEEecccccccc----------------------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHH
Q 012235 375 F-FDNTMDLIHTTGFMDGWL----------------------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYM 431 (467)
Q Consensus 375 f-~d~sFDlVis~~~L~h~~----------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~ 431 (467)
+ ..++||+|+|+.....-. ..+.++.++.++.+.|+|||.+++..-. ++.+.+.
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~ 390 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVR 390 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHH
Confidence 3 246899999976431100 0012346778888999999998874422 3345788
Q ss_pred HHHHHcCceeeEE
Q 012235 432 YMFLQFRYKKHKW 444 (467)
Q Consensus 432 ~~i~~~Gf~~l~W 444 (467)
++++..||..+.-
T Consensus 391 ~ll~~~Gf~~v~v 403 (423)
T PRK14966 391 GVLAENGFSGVET 403 (423)
T ss_pred HHHHHCCCcEEEE
Confidence 8888888876544
No 112
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.80 E-value=1e-07 Score=101.06 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC-ccE--EEccCCCCc
Q 012235 304 DFLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL-IPL--YVTLNQRLP 374 (467)
Q Consensus 304 d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~-i~~--~~~d~~~Lp 374 (467)
...+...+...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ +. +.+ ..+|....+
T Consensus 227 s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a--~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 227 AQWVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVA--LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34556667777776 8999999999999999876 356777 77778887766543 32 223 445554444
Q ss_pred c--CCCccceEEec------cccccccc------hh-------hHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHH
Q 012235 375 F--FDNTMDLIHTT------GFMDGWLD------ML-------LLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMY 432 (467)
Q Consensus 375 f--~d~sFDlVis~------~~L~h~~~------~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~ 432 (467)
+ .+++||.|++. .++.+.++ .. ....+|.++.++|||||.+++++.....++ .+.+..
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~ 382 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKA 382 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHH
Confidence 3 46789999963 23322111 00 125789999999999999999987765443 335555
Q ss_pred HHHHc
Q 012235 433 MFLQF 437 (467)
Q Consensus 433 ~i~~~ 437 (467)
.+++.
T Consensus 383 ~l~~~ 387 (426)
T TIGR00563 383 FLQEH 387 (426)
T ss_pred HHHhC
Confidence 66654
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=98.79 E-value=7.2e-08 Score=96.39 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=88.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccch-
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM- 395 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~- 395 (467)
+|||+|||+|.++..++.+ +..|++ +|+++.|++.++++- .+.++++|+..+.. +++||+|+++..+.+....
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~g--VDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVC--VELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchh
Confidence 8999999999999888775 467888 677788998887653 37888999887653 5789999999888553211
Q ss_pred -h---------------hHHHHHHHHHhccCCCcEEEEEe---ccc-CCCCHHHHHHHHHHcCce
Q 012235 396 -L---------------LLDFILFDWDRILRPGGLLWIDR---FFC-NKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 396 -~---------------~l~~~L~el~RvLKPGG~LiI~~---~~~-~~~~~~~~~~~i~~~Gf~ 440 (467)
. .+...+....++|+|+|.+++.- +.. ..-..++|.++++..||.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 0 02467788899999999877641 222 223566999999999984
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=1.6e-07 Score=100.14 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=99.2
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp- 374 (467)
..+...+.+.++. +|||+|||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+..++
T Consensus 240 ~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a--vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 240 MLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVA--LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc
Confidence 3455566666666 8999999999999999875 356777 67777777766542 3 2678888887653
Q ss_pred cCCCccceEEecccc------cccc------chhh-------HHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIHTTGFM------DGWL------DMLL-------LDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~~~L------~h~~------~~~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
...++||+|++...- .+.+ .... ...++.++.++|||||.++.++.....++.+ .+...+
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 123789999975321 1110 0011 1357999999999999999877655443333 555566
Q ss_pred HHc-CceeeEE-----------------EEccC-CCCceEEEEEeecC
Q 012235 435 LQF-RYKKHKW-----------------AISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 435 ~~~-Gf~~l~W-----------------~~~~k-~~devyl~avlqKP 463 (467)
++. +|+.+.. .+-+. ..-+.++.|+++|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 396 EEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred HhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 654 2544331 11222 23356788888874
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=1.8e-07 Score=99.49 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=88.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lp- 374 (467)
..+..+++..++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ |. +.+.++|+..++
T Consensus 227 ~~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a--~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 227 QIVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILA--VDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh
Confidence 3455566777776 8999999999999888875 457888 77778887777543 32 568888888776
Q ss_pred cCCCccceEEeccccc---ccc--c-------h-------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIHTTGFMD---GWL--D-------M-------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~~~L~---h~~--~-------~-------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
+.+++||.|++...-. .+. + . .....++.++.+.|||||.+++++.....++.+ .+...+
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl 382 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFV 382 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHH
Confidence 4567899999632111 010 0 0 012467899999999999999998876544433 445555
Q ss_pred HH
Q 012235 435 LQ 436 (467)
Q Consensus 435 ~~ 436 (467)
++
T Consensus 383 ~~ 384 (431)
T PRK14903 383 YE 384 (431)
T ss_pred Hh
Confidence 54
No 116
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.77 E-value=1.1e-07 Score=91.18 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=90.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCH-HHHHH-HHHcCC---ccEEEccCCC--Ccc------CCCccceEE
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGA-PFNEM-IALRGL---IPLYVTLNQR--LPF------FDNTMDLIH 384 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~-~~l~~-a~~rg~---i~~~~~d~~~--Lpf------~d~sFDlVi 384 (467)
+||+||+|||..+.++++. ..+..-.|+|... ..++. +.+.+. ..-+.-|+.. .+. ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999988 4555565666443 22222 333332 1112223222 222 356999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCce
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYK 440 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~ 440 (467)
|..++ |+.+....+.++..+.++|+|||.|++..++.... +.+++.++..+.|+.
T Consensus 108 ~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 108 CINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred ehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 99999 99988888999999999999999999987665332 344566666666666
Q ss_pred eeEEEEccCCCCceEEEEEeec
Q 012235 441 KHKWAISPKSKDEVYLSALLEK 462 (467)
Q Consensus 441 ~l~W~~~~k~~devyl~avlqK 462 (467)
...-...+.++. ..||+|
T Consensus 187 l~~~~~MPANN~----~Lvfrk 204 (204)
T PF06080_consen 187 LEEDIDMPANNL----LLVFRK 204 (204)
T ss_pred cCcccccCCCCe----EEEEeC
Confidence 554443333322 345665
No 117
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.77 E-value=2.6e-08 Score=93.36 Aligned_cols=122 Identities=21% Similarity=0.280 Sum_probs=90.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH---Hc-C---CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA---LR-G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~---~r-g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||.|.+...|++.|.+---+++|.|+.+++.|+ ++ + .|.|.+.|+..-.+..+.||+|+--..+..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 899999999999999999976543344899998877664 23 2 2889999988877888999999975554322
Q ss_pred -----cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 393 -----LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 393 -----~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
.....+...+..+.+.|+|||.|+|....... +++.+.++..||..++-
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---DELVEEFENFNFEYLST 203 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH---HHHHHHHhcCCeEEEEe
Confidence 12222345788899999999999997765443 46777888877766544
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.77 E-value=2.8e-08 Score=96.85 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 317 ETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
..++|+|||+|.|.++..++++ +.+++. .|. +..++.+.+...+.++.+|.. -+++. +|+|+...++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATV--FDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEE--EE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCccee--ecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 3458999999999999999988 455555 555 556666666667999999987 56655 999999999988877
Q ss_pred hhhHHHHHHHHHhccCCC--cEEEEEecccCCC
Q 012235 395 MLLLDFILFDWDRILRPG--GLLWIDRFFCNKK 425 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPG--G~LiI~~~~~~~~ 425 (467)
.. ...+|+++.+.|+|| |.++|.++..+..
T Consensus 174 ~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 174 ED-CVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp HH-HHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred HH-HHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 64 579999999999999 9999998876554
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.76 E-value=4.6e-08 Score=90.52 Aligned_cols=104 Identities=10% Similarity=0.130 Sum_probs=75.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceE
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.+.+.++. +|||+|||+|.++..+++++..+++ +|+++.+++.++++ ..+.++.+|+..+++++..||.|
T Consensus 6 ~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~--vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 6 VRAANLRPGD--TVLEIGPGKGALTEELLERAARVTA--IEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEE--EECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 3444555555 8999999999999999999888888 55667777777654 24788999999998877789999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++..+ |.... .+..++.+ ..+.++|.+++..
T Consensus 82 i~n~Py-~~~~~-~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPY-NISTP-ILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred EECCCc-ccHHH-HHHHHHhc--CCCcceEEEEEEH
Confidence 998776 54332 12333332 1245888888753
No 120
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.75 E-value=1.2e-07 Score=92.04 Aligned_cols=129 Identities=22% Similarity=0.218 Sum_probs=91.7
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-C-----------------CccEEEccCCC
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-G-----------------LIPLYVTLNQR 372 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-g-----------------~i~~~~~d~~~ 372 (467)
+...++. +||+.|||.|.-+..|+++|++|+| +|+|+.+++.+.++ + .|.++++|...
T Consensus 33 l~~~~~~--rvLvPgCG~g~D~~~La~~G~~VvG--vDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 33 LALKPGG--RVLVPGCGKGYDMLWLAEQGHDVVG--VDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp HTTSTSE--EEEETTTTTSCHHHHHHHTTEEEEE--EES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred cCCCCCC--eEEEeCCCChHHHHHHHHCCCeEEE--EecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence 3444544 8999999999999999999999999 88899998887432 1 24678889888
Q ss_pred CccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------CHHHHHHHHHHcCceee
Q 012235 373 LPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 373 Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------~~~~~~~~i~~~Gf~~l 442 (467)
++... ++||+|+=..++ +-.+++......+.+.++|+|||.+++.++..... ..+++.+++. -+|+..
T Consensus 109 l~~~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~ 186 (218)
T PF05724_consen 109 LPPEDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIE 186 (218)
T ss_dssp GGGSCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEE
T ss_pred CChhhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEE
Confidence 87543 589999988888 44455567899999999999999955544433221 2336666666 456555
Q ss_pred EEE
Q 012235 443 KWA 445 (467)
Q Consensus 443 ~W~ 445 (467)
...
T Consensus 187 ~l~ 189 (218)
T PF05724_consen 187 ELE 189 (218)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=2.6e-07 Score=94.08 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=77.8
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++.. +.+|++ +|+++.+++.++++ + .+.++++|... ++++++||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~a--vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDA--VDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 37999999999999999987 457777 77888888777543 3 37788888644 2335689999997322
Q ss_pred c-------------cccc---------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 390 D-------------GWLD---------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 390 ~-------------h~~~---------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
. |.+. ....+.++.++.++|+|||.+++.... +...+.+.+...|
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----~~~~~~~~~~~~~ 278 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----SRVHLEEAYPDVP 278 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHhhCC
Confidence 1 1100 012357889999999999999985432 2234555666554
No 122
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.75 E-value=1.3e-07 Score=93.34 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=94.7
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
..++||||+|.|..+..|+..-.+|++ -+.|..|....+++|. .++ +..++.-.+..||+|.|..+|.....+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~a--TE~S~~Mr~rL~~kg~-~vl--~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYA--TEASPPMRWRLSKKGF-TVL--DIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEe--ecCCHHHHHHHHhCCC-eEE--ehhhhhccCCceEEEeehhhhhccCCH--
Confidence 347999999999999999988777888 6678999999999884 333 222233335789999999999766666
Q ss_pred HHHHHHHHHhccCCCcEEEEEe---------ccc---CCC-------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 398 LDFILFDWDRILRPGGLLWIDR---------FFC---NKK-------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~---------~~~---~~~-------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
..+|+++.+.|+|+|.++++. ... .+. ..+.+.+.++..||+...|.-.+.
T Consensus 168 -~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 168 -LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred -HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 589999999999999998852 111 000 123556888999999999987776
No 123
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.1e-08 Score=98.78 Aligned_cols=122 Identities=18% Similarity=0.378 Sum_probs=94.3
Q ss_pred hcccccccccCCcChHHH--------HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH
Q 012235 289 DKEKPKWVANRSVPVDFL--------ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL 359 (467)
Q Consensus 289 ~~e~~~W~~~~~~~~d~~--------I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~ 359 (467)
.+++..|....+. ++. .+.+.+.+.. ...++|||||.|.++..+..+|+. ++- +|.|..|++.++.
T Consensus 39 qrdrAa~~~d~k~--dylkeeig~rlaDrvfD~kk~-fp~a~diGcs~G~v~rhl~~e~vekli~--~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 39 QRDRAAWLSDQKN--DYLKEEIGDRLADRVFDCKKS-FPTAFDIGCSLGAVKRHLRGEGVEKLIM--MDTSYDMIKSCRD 113 (325)
T ss_pred HHhHHhhcchhhh--hHHHHHHHHHHHHHHHHHhhh-CcceeecccchhhhhHHHHhcchhheee--eecchHHHHHhhc
Confidence 3566667663222 322 3344444432 237899999999999999998764 333 7889999998876
Q ss_pred cC---C-ccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 360 RG---L-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 360 rg---~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.. . ....++|-+.++|.++++|+|+++.++ ||.++ +...+.++...|||+|.|+-+
T Consensus 114 ~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~Nd--LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 114 AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTND--LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred cCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhcc--CchHHHHHHHhcCCCccchhH
Confidence 52 2 457788999999999999999999999 99998 689999999999999998764
No 124
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.72 E-value=3e-07 Score=92.34 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=81.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..++.. +..|++ +|+++.+++.++++ + .+.++.+|... ++++++||+|+++....
T Consensus 117 ~vLDlG~GsG~i~l~la~~~~~~~v~a--vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEFPNAEVIA--VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred EEEEEeccHhHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 7999999999999999986 357777 77788888777643 2 26788888654 34445899999973221
Q ss_pred ------------cccch----------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH-HcCceeeEE
Q 012235 391 ------------GWLDM----------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL-QFRYKKHKW 444 (467)
Q Consensus 391 ------------h~~~~----------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~-~~Gf~~l~W 444 (467)
++.+. ..++.++.++.++|+|||++++..... ..+.+.+++. ..||..+..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---HHHHHHHHHHhcCCCceeEE
Confidence 11110 134678999999999999998855322 2235666666 457765544
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.70 E-value=8.7e-08 Score=98.19 Aligned_cols=100 Identities=21% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d 377 (467)
+.+.++++++. +|||+|||+|.++..+++.. ..|++ +|.++.+++.+++ .+ .+.++.+|....+...
T Consensus 72 ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~Vvg--VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 72 FMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVS--VEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 44455666666 89999999999999998762 25777 6777887776654 23 2667788876665555
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++||+|++...+. .....+.++|+|||.+++..
T Consensus 148 ~~fD~Ii~~~g~~---------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTVGVD---------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECCchH---------HhHHHHHHhcCCCCEEEEEe
Confidence 7899999987662 33445778999999988843
No 126
>PRK04457 spermidine synthase; Provisional
Probab=98.68 E-value=3.5e-07 Score=91.11 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=80.5
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCC-ccCCCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRL-PFFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~L-pf~d~sFDlVis~~~ 388 (467)
++|||||||+|.++..+++. +..+++ +|+++.+++.+++. ..+.++++|+..+ ...+++||+|++...
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~--VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTA--VEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 48999999999999999876 456777 66677888877653 2367888886543 223468999997531
Q ss_pred c-ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 389 M-DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 389 L-~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
- ...........+++++.++|+|||.+++..+... .....+.+.+++. |..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~-~~~~~~l~~l~~~-F~~ 197 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD-KRYDRYLERLESS-FEG 197 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc-hhHHHHHHHHHHh-cCC
Confidence 1 1111111125899999999999999988544322 2234566666666 654
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.5e-07 Score=93.24 Aligned_cols=125 Identities=20% Similarity=0.258 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----CCc--cEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----GLI--PLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g~i--~~~~~d~~~Lpf~d~ 378 (467)
+.+-+....+. +|||+|||.|.++..+++... .++- +|++..+++.++++ +.- .++.++... +..+
T Consensus 150 Ll~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtm--vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~- 223 (300)
T COG2813 150 LLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTL--VDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEE--EecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-
Confidence 33444444444 799999999999999999965 5555 66777777776543 221 244454333 4434
Q ss_pred ccceEEeccccccccch--hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 379 TMDLIHTTGFMDGWLDM--LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~--~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+||+|+||-.++.-... ..-..++.+..+.|++||.|+|+.-... .+...+++. |..+.
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l-----~y~~~L~~~-Fg~v~ 284 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL-----PYEKKLKEL-FGNVE 284 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC-----ChHHHHHHh-cCCEE
Confidence 99999999999422221 1123789999999999999999764111 355666665 55443
No 128
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.9e-08 Score=92.35 Aligned_cols=102 Identities=23% Similarity=0.184 Sum_probs=76.9
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d~ 378 (467)
..+.+++.+++++ +|||||||+|+.++.|++..-+|++ ++..+...+.|++ .| ++.+.++|...=--+..
T Consensus 62 A~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~s--iEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVS--IERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEE--EEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 3566788899998 9999999999999999999778988 5555565555544 23 37788888654323358
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.||.|+.+.+... +-..+.+.|||||.+++-.
T Consensus 138 PyD~I~Vtaaa~~---------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 138 PYDRIIVTAAAPE---------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcCEEEEeeccCC---------CCHHHHHhcccCCEEEEEE
Confidence 8999999988732 3345678899999999843
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.67 E-value=4.4e-08 Score=94.56 Aligned_cols=99 Identities=24% Similarity=0.230 Sum_probs=68.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.++++. +|||||||+|++++.|+.. + ..|++ +|..+...+.++++ + .+.++++|...-.-.
T Consensus 63 ~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~--vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 63 RMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVS--VERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEE--EESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEE--ECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 456777888988 9999999999999999876 3 25777 55556666555432 3 377888886543334
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
...||.|++..+.. ..-..+.+.||+||++++
T Consensus 139 ~apfD~I~v~~a~~---------~ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 139 EAPFDRIIVTAAVP---------EIPEALLEQLKPGGRLVA 170 (209)
T ss_dssp G-SEEEEEESSBBS---------S--HHHHHTEEEEEEEEE
T ss_pred CCCcCEEEEeeccc---------hHHHHHHHhcCCCcEEEE
Confidence 57899999998883 234557788999999988
No 130
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.65 E-value=3.7e-07 Score=99.01 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..++.. +..|++ +|+++.+++.+.++ + .+.++.+|... ++++++||+|+++....
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~a--vDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIA--TDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 7999999999999988865 567877 67778888777653 2 26677777543 23456899999974321
Q ss_pred c--------------cc------ch---hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 391 G--------------WL------DM---LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 391 h--------------~~------~~---~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
. .+ .. ..+..++.++.++|+|||.+++..- ....+.+.+++...||..+.-
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---CchHHHHHHHHHhcCCCceEE
Confidence 1 00 01 1234578889999999999988532 233447777888888865543
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.63 E-value=2.9e-07 Score=91.13 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCC-cc-CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRL-PF-FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~L-pf-~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++.+|.... +. ..+.||+|+++-.....
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~--vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHA--ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 7999999999999999875 567877 67778888777643 2256788886542 21 13579999998643210
Q ss_pred ------cc-----------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 393 ------LD-----------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 393 ------~~-----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
.+ .+.++.++..+.++|+|||.+++..- .++...+...+++.||..
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~---~~~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS---ERQAPLAVEAFARAGLIA 235 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---cchHHHHHHHHHHCCCCc
Confidence 00 01134778888899999999998653 233447777888877643
No 132
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.63 E-value=1.3e-06 Score=82.44 Aligned_cols=126 Identities=19% Similarity=0.139 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
.....|.+.+++ +++|||||+|+.+..++.. ..+|++ +|-.+++++.+.++ + ++.++.+++...--..
T Consensus 25 l~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~A--Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 25 LTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIA--IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence 344556777887 9999999999999999944 456666 67667776665432 2 3667788765432112
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc-eeeEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY-KKHKW 444 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf-~~l~W 444 (467)
.++|.|+....-. ++.+++.+...|||||.++..... -+......+.+++.|+ ..++.
T Consensus 101 ~~~daiFIGGg~~-------i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 101 PSPDAIFIGGGGN-------IEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred CCCCEEEECCCCC-------HHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCCceEEEE
Confidence 2799999988741 468999999999999998884322 1233367788899998 44443
No 133
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.57 E-value=1.5e-07 Score=96.73 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=69.6
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC----------------CccEEEccCCCC------cc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG----------------LIPLYVTLNQRL------PF 375 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg----------------~i~~~~~d~~~L------pf 375 (467)
.+|||+|||-|.-...+...+ ..++| +|++...++.|.+|- ...++.+|...- +.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg--~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVG--IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEE--EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEE--EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 389999999998766666664 45777 777888888776542 134567765432 22
Q ss_pred CCCccceEEeccccccc-cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 376 FDNTMDLIHTTGFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
....||+|-|-+++|+. ...+..+.+|..+...|+|||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 23599999999999433 3555567799999999999999999765
No 134
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.4e-06 Score=86.01 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=77.4
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----CCcc--EEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----GLIP--LYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g~i~--~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|..+..++.... .|++ .|+|+.+++.|+++ +... ++.+|. ++--.++||+|+||-....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a--~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIA--VDISPDALALARENAERNGLVRVLVVQSDL--FEPLRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEE--EECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccCCceeEEEeCCCCCC
Confidence 699999999999999999865 7777 67777777776542 3333 333332 2222448999999854321
Q ss_pred cc----------------------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 392 WL----------------------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 392 ~~----------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
-. .......++.++.+.|+|||.+++-.- .++.+.+.+++.+.|+
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LTQGEAVKALFEDTGF 255 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CCcHHHHHHHHHhcCC
Confidence 11 012345788899999999999888442 2334578889999985
No 135
>PRK00811 spermidine synthase; Provisional
Probab=98.52 E-value=8.8e-07 Score=89.18 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=77.9
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC-ccCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL-PFFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L-pf~d~sFDlV 383 (467)
.++|||||||.|..+..++++ + ..|++ +|+++.+++.+++. ..+.++.+|+..+ ...+++||+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~--VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITL--VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEE--EeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 348999999999999999887 4 46888 55667777766542 2367888886653 3346789999
Q ss_pred Eeccccccccchhh--HHHHHHHHHhccCCCcEEEEEecc--cCCCCHHHHHHHHHHc
Q 012235 384 HTTGFMDGWLDMLL--LDFILFDWDRILRPGGLLWIDRFF--CNKKDLDDYMYMFLQF 437 (467)
Q Consensus 384 is~~~L~h~~~~~~--l~~~L~el~RvLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~ 437 (467)
++...- ++..... .+.+++.+.++|+|||.+++.... ...+......+.+++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 997543 3322211 257889999999999998874321 1112222445555555
No 136
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.47 E-value=2.4e-06 Score=82.59 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=88.0
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH-----cCC-ccEEEccCCCCccCCCccceEEeccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL-----RGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~-----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
..++||.|+|-|..+..+.-. -.+|.- ++..+.+++.|.+ .+. ..+++...+++...++.||+|.+-+++-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 458999999999999977655 445665 6677888888874 222 4677777888766678999999999998
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------C-----CHHHHHHHHHHcCceeeEEEEcc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------K-----DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------~-----~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
|..+.+ +-.+|......|+|+|.+++-+=.... + ..+.+.++++++|++.++=....
T Consensus 134 hLTD~d-lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 134 HLTDED-LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GS-HHH-HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCCHHH-HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 877765 779999999999999999984322221 1 23489999999999988765443
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.46 E-value=3.2e-06 Score=90.20 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=86.8
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC----CccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR----LPFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~----Lpf~d~s 379 (467)
.+...++. +|||+|||+|.++..+++.+..|++ +|+++.|++.+.++ + .+.++.+|+.. +++.+++
T Consensus 292 ~l~~~~~~--~VLDlgcGtG~~sl~la~~~~~V~g--vD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 292 WLDPQPGD--RVLDLFCGLGNFTLPLARQAAEVVG--VEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HhcCCCCC--EEEEEeccCCHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 34444555 8999999999999999998888888 77888888877643 3 37788888653 3345678
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCceEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEVYL 456 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~devyl 456 (467)
||+|+++-.-.. ....+..+.+ ++|++.++++. +..... ++. .+...||+..+-...+- .-..+=.
T Consensus 368 fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSC---np~tlaRDl~-~L~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 368 FDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSC---NPATLARDAG-VLVEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred CCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEe---ChHHhhccHH-HHhhCCcEEEEEEEeccCCCCCcEEE
Confidence 999998765421 1244555555 68999888853 222222 222 33345776554432221 2223434
Q ss_pred EEEeec
Q 012235 457 SALLEK 462 (467)
Q Consensus 457 ~avlqK 462 (467)
.++|+|
T Consensus 437 v~lL~r 442 (443)
T PRK13168 437 MALFER 442 (443)
T ss_pred EEEEEe
Confidence 455554
No 138
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.44 E-value=1.1e-06 Score=81.91 Aligned_cols=141 Identities=19% Similarity=0.303 Sum_probs=81.5
Q ss_pred HHHhc-CCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHcCCccEEEccCC------CCc--c
Q 012235 308 SDILA-IKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ------RLP--F 375 (467)
Q Consensus 308 ~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~------~Lp--f 375 (467)
.+... +.++...+|||+||++|.|+..+.+++ ..|+++|+....+. ..+..+.+|.. .+. +
T Consensus 13 ~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-------~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 13 DEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-------QNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-------cceeeeecccchhhHHHhhhhhc
Confidence 33344 445444599999999999999999997 67888666543211 11222222211 111 1
Q ss_pred --CCCccceEEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 376 --FDNTMDLIHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 376 --~d~sFDlVis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
..+.||+|+|..+.. ++.........+.-+...|+|||.+++-.+-.... . .+...+... |..+++.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~-~~~~~l~~~-F~~v~~~ 162 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-E-ELIYLLKRC-FSKVKIV 162 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-H-HHHHHHHHH-HHHEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-H-HHHHHHHhC-CeEEEEE
Confidence 126899999987431 12222222344555567899999999877664443 3 667777765 7878776
Q ss_pred EccC---CCCceEEEE
Q 012235 446 ISPK---SKDEVYLSA 458 (467)
Q Consensus 446 ~~~k---~~devyl~a 458 (467)
.... ...|.|+.+
T Consensus 163 Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 163 KPPSSRSESSEEYLVC 178 (181)
T ss_dssp E-TTSBTTCBEEEEES
T ss_pred ECcCCCCCccEEEEEE
Confidence 5543 456778864
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.43 E-value=1.3e-06 Score=85.69 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=67.8
Q ss_pred eEEEECCCccHHHHHHhhC-----CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-----NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-----g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|||+|||+|.++..++++ ...|++ +|+++.+++.+++.- .+.++.+|+...++ +++||+|+++-.+....
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~a--VEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVC--VELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEE--EECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 8999999999999988764 457777 666677888887553 37888999877665 57899999997663111
Q ss_pred ---------chhhHHHHHHHHHhccCCCcEEEE
Q 012235 394 ---------DMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 394 ---------~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.......++..+.+++++|+. ++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 111134578888887777665 54
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=98.43 E-value=3.6e-06 Score=87.40 Aligned_cols=128 Identities=10% Similarity=-0.027 Sum_probs=84.8
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------------CCccEEEccCCCC-ccCCCccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------------GLIPLYVTLNQRL-PFFDNTMD 381 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------------g~i~~~~~d~~~L-pf~d~sFD 381 (467)
.++||+||||+|..++.+.+.. ..|+. +|+++.+++.|++. ..+.++++|+..+ ...++.||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~--VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDL--VDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEE--EeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 3489999999999999888874 56777 66668888888741 1367788887653 34467899
Q ss_pred eEEeccccc--cccchhhHHHHHHHHHhccCCCcEEEEEecccC--CCCHHHHHHHHHHcCceeeEEEEc
Q 012235 382 LIHTTGFMD--GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN--KKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 382 lVis~~~L~--h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~--~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+|++...-. .......-..++..+.+.|+|||.+++..-... ......+.+.+++.|+....+.+.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 999885320 111111124689999999999999887532111 111124566778887766655443
No 141
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.40 E-value=9.9e-07 Score=85.76 Aligned_cols=128 Identities=21% Similarity=0.154 Sum_probs=89.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC----CccEEEccCCCC--ccCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG----LIPLYVTLNQRL--PFFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg----~i~~~~~d~~~L--pf~d~sFD 381 (467)
.+.+. +|||...|-|+++...+++|. .|+.++.|. ..++.+.. ++ .+.++.+|+.++ .|.|.+||
T Consensus 132 ~~~G~--rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGE--RVLDTCTGLGYTAIEALERGAIHVITVEKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCC--EeeeeccCccHHHHHHHHcCCcEEEEEeeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 34466 999999999999999999998 888866663 33443332 22 267888987665 37799999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCH-HHHHHHHHHcCceeeEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDL-DDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~-~~~~~~i~~~Gf~~l~W 444 (467)
+|+-.-.-......-..+.+..|++|+|||||.++--.-.. ..-++ ....+.+++.||..++-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 99965332222223234689999999999999986633221 12233 38889999999987764
No 142
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=2.4e-06 Score=93.02 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=83.2
Q ss_pred ceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------------CCccEEEccCCCC-ccCCCccce
Q 012235 319 RIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------------GLIPLYVTLNQRL-PFFDNTMDL 382 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------------g~i~~~~~d~~~L-pf~d~sFDl 382 (467)
++|||+|||+|..+..+++++ .+++. +|+++++++.+++. ..++++.+|+.++ ...+++||+
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~--VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTL--VDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEE--EECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 489999999999999998874 47777 66678888888762 2366788887653 233578999
Q ss_pred EEeccccccccc---hhhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCc
Q 012235 383 IHTTGFMDGWLD---MLLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 383 Vis~~~L~h~~~---~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf 439 (467)
|+++..- +..+ ....+++++.+.+.|||||.+++..... ..+....+.+.+++.||
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 9998643 2211 1111368899999999999998854221 22223367778888888
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.37 E-value=1.7e-06 Score=82.70 Aligned_cols=97 Identities=21% Similarity=0.325 Sum_probs=67.2
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHH----HHcC--CccEEEccCCC-Cc--cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMI----ALRG--LIPLYVTLNQR-LP--FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a----~~rg--~i~~~~~d~~~-Lp--f~d~sFDlVis~~~ 388 (467)
.+||||||.|.+...+|.. +..++| +|+....+..+ .+++ ++.++.+|+.. ++ ++++++|.|+.++.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iG--iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIG--IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEE--EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEE--EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 7999999999999999987 566777 66665555444 3334 37788888776 33 55799999999876
Q ss_pred cccccch------hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDM------LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
= .|... -.-..++..+.++|+|||.+.+.+
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 5 44421 112479999999999999998854
No 144
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.2e-06 Score=82.44 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=88.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf 375 (467)
+|...+++.++. +|||.|.|+|.++..|+.. | -+|++++ +-+...+.|.++ + .+.+..+|....-+
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE--~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYE--IREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEE--ecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 677888999998 9999999999999999964 3 4677744 445566665442 2 26677788777655
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
++ .||.|+... +++ ..++..++.+|+|||.+++..+.. ++.+...+.++..||..+
T Consensus 161 ~~-~vDav~LDm-----p~P---W~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 161 EE-DVDAVFLDL-----PDP---WNVLEHVSDALKPGGVVVVYSPTV--EQVEKTVEALRERGFVDI 216 (256)
T ss_pred cc-ccCEEEEcC-----CCh---HHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhcCccch
Confidence 44 899998644 334 479999999999999988855443 445556666777788443
No 145
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.33 E-value=2.7e-06 Score=83.40 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCC-c-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRL-P- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~L-p- 374 (467)
+..+....+.. +|||+|||+|+-+..++.. +..+++ +|.++.+.+.+++ .+ .+.++.+++... +
T Consensus 60 L~~l~~~~~~~--~vLEiGt~~G~s~l~la~~~~~~g~v~t--iD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 60 LSMLVKIMNAK--NTLEIGVFTGYSLLTTALALPEDGRITA--IDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHhCCC--EEEEecCcccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 33444554444 8999999999988777754 357777 5566666665543 23 377888886543 2
Q ss_pred ----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 ----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 ----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+.++||+|+....- ..+...+..+.+.|||||.+++++..+
T Consensus 136 l~~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHhCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 124689999886532 124578899999999999999876554
No 146
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.33 E-value=1e-06 Score=89.10 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=74.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC------------CccEEEccCC------CCccCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG------------LIPLYVTLNQ------RLPFFDNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg------------~i~~~~~d~~------~Lpf~d~sF 380 (467)
.++|+|||-|+-....-+.|+ .++| +|++...++.+.+|. .+.++.+|.. .+++.+.+|
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~~~ig--iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIGEYIG--IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccceeccCCcccHhHhhhhcccceEe--eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 789999999988888777765 4667 777777777776541 1467788753 345566669
Q ss_pred ceEEeccccccc--cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGW--LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~--~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|-|-+++ |+ ...+..+.+|.++.+.|||||+|+-+.
T Consensus 198 DivScQF~~-HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 198 DIVSCQFAF-HYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred ceeeeeeeE-eeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 999999999 54 466667889999999999999987754
No 147
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.31 E-value=6e-06 Score=82.44 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=67.4
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
.++||+||||+|.++..+++.. ..+++ +|+++.+++.+.+. ..+.++.+|+..+ ...+++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~--veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATL--VDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEE--EeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3489999999999999888774 46777 55566776666542 1255666665432 22257899999
Q ss_pred eccccccccchhh--HHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWLDMLL--LDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~~~~~--l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.... +...... ...+++.+.++|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 87653 2221111 257889999999999999885
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=3.4e-06 Score=94.91 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=83.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCc-cCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLP-FFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lp-f~d~sFDl 382 (467)
+..+. +|||+|||+|.++..++..|. .|++ +|+++.+++.+.++ + .+.++++|+.++- -..++||+
T Consensus 536 ~~~g~--rVLDlf~gtG~~sl~aa~~Ga~~V~~--vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 536 MAKGK--DFLNLFAYTGTASVHAALGGAKSTTT--VDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred hcCCC--eEEEcCCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCE
Confidence 33454 899999999999999999876 4877 78888888877642 2 2568888865431 12578999
Q ss_pred EEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 383 IHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 383 Vis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+++.... .+........++..+.++|+|||.+++.+-...- ..-.+.+.+.|+...
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~---~~~~~~~~~~g~~~~ 676 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF---KMDEEGLAKLGLKAE 676 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC---ChhHHHHHhCCCeEE
Confidence 99975321 1111223467888899999999999886543221 122556666676443
No 149
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.30 E-value=9.3e-06 Score=82.85 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=65.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc-CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF-FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++++..|++ +|.++.+++.++++ + .+.++++|+..+.. .++.||+|+++-.-.
T Consensus 176 ~VLDl~cG~G~~sl~la~~~~~V~g--vD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~-- 251 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATPGMQLTG--IEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR-- 251 (315)
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC--
Confidence 8999999999999999999988988 67778888776542 3 37789999876542 345799999885421
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
++...+.++..-++|++.++++
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEE
Confidence 1112333334447888877773
No 150
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.29 E-value=5.1e-06 Score=79.51 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=62.1
Q ss_pred CCceEEEECCCcc----HHHHHHhhC-----C--CEEEEEecCCCHHHHHHHHH--------------------------
Q 012235 317 ETRIGLDFGVGTG----TFAARMREQ-----N--VTIVSTALNLGAPFNEMIAL-------------------------- 359 (467)
Q Consensus 317 ~~r~VLDIGCGtG----~~a~~La~~-----g--~~V~gvdiDiS~~~l~~a~~-------------------------- 359 (467)
..-+|+.+||++| ++|..+.+. + +.+.| .|++..+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~a--tDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILA--TDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEE--EES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEE--EECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 3347899999999 455555551 2 46667 5666777887753
Q ss_pred --------cCCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 360 --------RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 360 --------rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+..+.|...+....+...+.||+|+|..++.++.+. ....++..+++.|+|||+|++.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEEEE-
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEEEEe
Confidence 122556666766644456889999999999666544 4689999999999999999994
No 151
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.26 E-value=7.8e-06 Score=86.16 Aligned_cols=113 Identities=15% Similarity=0.003 Sum_probs=75.5
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC----CccEEEccCCCCc--c--CCCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG----LIPLYVTLNQRLP--F--FDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg----~i~~~~~d~~~Lp--f--~d~sFDlVis~ 386 (467)
+|||+|||+|.++..++..+. .|++ +|+++.+++.+.+ .+ .+.++++|+..+- + ..++||+|+++
T Consensus 223 rVLDlfsgtG~~~l~aa~~ga~~V~~--VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMGGCSQVVS--VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred eEEEeccCCCHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 899999999999987766654 7888 6777888777654 23 2568888876542 1 25689999998
Q ss_pred cccccccch-------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 387 GFMDGWLDM-------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 387 ~~L~h~~~~-------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
..... ... ..+..++....++|+|||.++..+....- +.+.+.+++.+
T Consensus 301 PP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~-~~~~f~~~v~~ 355 (396)
T PRK15128 301 PPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM-TSDLFQKIIAD 355 (396)
T ss_pred CCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC-CHHHHHHHHHH
Confidence 55311 111 12455666788999999999886533222 33455555543
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.24 E-value=8.6e-06 Score=86.43 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=79.1
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC----ccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL----PFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L----pf~d~s 379 (467)
.+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|+... ++.+++
T Consensus 287 ~l~~~~~~--~vLDl~cG~G~~sl~la~~~~~V~~--vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 287 ALELQGEE--LVVDAYCGVGTFTLPLAKQAKSVVG--IEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HhccCCCC--EEEEcCCCcCHHHHHHHHhCCEEEE--EEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 33444555 8999999999999999988888888 67778887777642 2 377888887542 234568
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
||+|+....-... . ..++..+.+ ++|++.++++ |+......-.+.+...||+...
T Consensus 363 ~D~vi~dPPr~G~-~----~~~l~~l~~-l~~~~ivyvs---c~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 363 PDVLLLDPPRKGC-A----AEVLRTIIE-LKPERIVYVS---CNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred CCEEEECcCCCCC-C----HHHHHHHHh-cCCCEEEEEc---CCHHHHHHHHHHHHHCCeeEEE
Confidence 9999976543111 1 345665554 8899887773 3333333223345556775443
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.21 E-value=2.6e-06 Score=87.19 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=69.8
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCC-CHHHHHHHHHcCC---ccEEEccCCCCccCCCccceEEecccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNL-GAPFNEMIALRGL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDi-S~~~l~~a~~rg~---i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
++|||+|||+|.++...++.|. .|++++... +.-+.+.+..++. ++++.+..+++.+|...+|+|+|-+.-+...
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 3899999999999999999874 578854432 2222333344443 7888888888777778999999976542222
Q ss_pred chhhHHHHHHHHHhccCCCcEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~Li 416 (467)
-...+..++..=.+.|+|||.++
T Consensus 142 ~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HhhhhhhhhhhhhhccCCCceEc
Confidence 23335677888899999999874
No 154
>PLN02366 spermidine synthase
Probab=98.19 E-value=1.3e-05 Score=81.92 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc--cCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP--FFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp--f~d~sFDlV 383 (467)
.++||+||||.|..+..+++.. ..|+. +|+.+.+++.+++. ..+.++.+|+..+- .+++.||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~--VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDI--CEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEE--EECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3589999999999999999872 35666 45556666666542 23778888865431 235789999
Q ss_pred Eeccccccccchh--hHHHHHHHHHhccCCCcEEEEEe--cccCCCCHHHHHHHHHHcCc-eeeEE
Q 012235 384 HTTGFMDGWLDML--LLDFILFDWDRILRPGGLLWIDR--FFCNKKDLDDYMYMFLQFRY-KKHKW 444 (467)
Q Consensus 384 is~~~L~h~~~~~--~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~~~~~~i~~~Gf-~~l~W 444 (467)
++...- ++.... ....+++.+.++|+|||.+++.. ++...+....+.+.+... | ..+.+
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~-F~~~v~~ 233 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET-FKGSVNY 233 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH-CCCceeE
Confidence 986543 222111 12468999999999999987732 222222233555566666 4 34443
No 155
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.18 E-value=1.1e-05 Score=80.03 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=61.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.+++.++. +|||||||+|.++..+++++..+++ +|+++.+++.+.++ +.+.++++|+..++++ .||.
T Consensus 21 iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~~v~~--vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~ 94 (258)
T PRK14896 21 IVEYAEDTDGD--PVLEIGPGKGALTDELAKRAKKVYA--IELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNK 94 (258)
T ss_pred HHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceE
Confidence 33444555565 8999999999999999999888888 56667777777653 3478899999888764 4899
Q ss_pred EEecccccccc
Q 012235 383 IHTTGFMDGWL 393 (467)
Q Consensus 383 Vis~~~L~h~~ 393 (467)
|+++... +..
T Consensus 95 Vv~NlPy-~i~ 104 (258)
T PRK14896 95 VVSNLPY-QIS 104 (258)
T ss_pred EEEcCCc-ccC
Confidence 9998876 544
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.18 E-value=7.4e-06 Score=82.81 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=69.1
Q ss_pred eEEEECCCcc----HHHHHHhhC------CCEEEEEecCCCHHHHHHHHHc-----------------------------
Q 012235 320 IGLDFGVGTG----TFAARMREQ------NVTIVSTALNLGAPFNEMIALR----------------------------- 360 (467)
Q Consensus 320 ~VLDIGCGtG----~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r----------------------------- 360 (467)
+|+..||+|| ++|..+.+. .+.|+| .|++..+++.|++-
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~a--tDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFA--SDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEE--EECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 7899999999 444444442 356777 56667777766431
Q ss_pred --------CCccEEEccCCCCccC-CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 361 --------GLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 361 --------g~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..|.|.+.|....+++ .+.||+|+|..++.|+.+. ....++..+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~-~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT-TQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH-HHHHHHHHHHHHhCCCcEEEEeC
Confidence 1134555665554433 5789999999999777554 46899999999999999998843
No 157
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.17 E-value=8.3e-06 Score=80.75 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf 375 (467)
+|...+++.+|+ +|||.|.|+|.++..|+.. .-.|++ .+..++..+.|.++ + .+.+.+.|...-.|
T Consensus 31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t--~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYT--YEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEc--cccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 577788999998 9999999999999999875 346887 45556666666542 3 37788888754333
Q ss_pred C---CCccceEEeccccccccchhhHHHHHHHHHhcc-CCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 376 F---DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRIL-RPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 376 ~---d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvL-KPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
. ++.+|.|+....- + -.++..+.++| ||||.+++-.+.. ++.....+.+++.||..+.
T Consensus 107 ~~~~~~~~DavfLDlp~-----P---w~~i~~~~~~L~~~gG~i~~fsP~i--eQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFLDLPD-----P---WEAIPHAKRALKKPGGRICCFSPCI--EQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEEESSS-----G---GGGHHHHHHHE-EEEEEEEEEESSH--HHHHHHHHHHHHTTEEEEE
T ss_pred cccccCcccEEEEeCCC-----H---HHHHHHHHHHHhcCCceEEEECCCH--HHHHHHHHHHHHCCCeeeE
Confidence 2 3679999865433 3 25888999999 9999988855443 3455677788888996553
No 158
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.15 E-value=7.7e-06 Score=80.08 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=56.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHH-HHHcCCcc-EEEccCCCCc-----cCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEM-IALRGLIP-LYVTLNQRLP-----FFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~-a~~rg~i~-~~~~d~~~Lp-----f~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.|+..++++|. .|++ +|++..|+.. .++...+. +...++..+. ..-..+|+++++..+
T Consensus 78 ~vlDiG~gtG~~t~~l~~~ga~~v~a--vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~-- 153 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQKGAKEVYG--VDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS-- 153 (228)
T ss_pred EEEEcccCCCHHHHHHHHcCCCEEEE--EeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh--
Confidence 899999999999999999964 6888 7777766665 33332222 2233433222 111356766665554
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.+..+.+.|+| |.+++
T Consensus 154 ---------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 154 ---------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred ---------HHHHHHHHhCc-CeEEE
Confidence 58889999999 77665
No 159
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.15 E-value=1.1e-05 Score=79.61 Aligned_cols=78 Identities=8% Similarity=0.162 Sum_probs=58.6
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccc---
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMD--- 381 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFD--- 381 (467)
+.+...+++ +|||||||+|.++..|++++..+++ +|.++.+++.+..+ +.+.++.+|+..++++ .+|
T Consensus 23 ~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~~--iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~ 96 (253)
T TIGR00755 23 EAANVLEGD--VVLEIGPGLGALTEPLLKRAKKVTA--IEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQL 96 (253)
T ss_pred HhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCcEEE--EECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcc
Confidence 334445555 8999999999999999999888888 55566777776643 3477889999888764 566
Q ss_pred eEEecccccccc
Q 012235 382 LIHTTGFMDGWL 393 (467)
Q Consensus 382 lVis~~~L~h~~ 393 (467)
+|+++..+ |+.
T Consensus 97 ~vvsNlPy-~i~ 107 (253)
T TIGR00755 97 KVVSNLPY-NIS 107 (253)
T ss_pred eEEEcCCh-hhH
Confidence 88888766 544
No 160
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=8.2e-05 Score=70.13 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=81.6
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHH----HHcC-CccEEEccCCCCccCCCccceEEecccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMI----ALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a----~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
...+||||||+|..+..|++. +..++.+..|+++.+.+.. ..++ .+..++.|...- ...++.|+++.+.....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 348999999999999999887 4444444466666665543 3232 266777775432 23489999998754321
Q ss_pred --------------cc----chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 392 --------------WL----DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 392 --------------~~----~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|. ..+-...++..+..+|.|.|.|++.... ++.++++.++++..||...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcCHHHHHHHHhhccccee
Confidence 21 1112457788888999999999996544 4456678888888888543
No 161
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=2.2e-06 Score=85.53 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=83.9
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEe
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
..+++. ...+. .++|+|||.|-+...= -..-+++ .|.+...+.-+++.+......+|+..+|+.+.+||.+++
T Consensus 36 v~qfl~~~~~gs--v~~d~gCGngky~~~~--p~~~~ig--~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 36 VRQFLDSQPTGS--VGLDVGCGNGKYLGVN--PLCLIIG--CDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHHhccCCcc--eeeecccCCcccCcCC--Ccceeee--cchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 344444 34455 8999999999653311 1223444 777777766666666446888999999999999999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..+++|+........+++|+.|+|||||...+..+..
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999888778899999999999999987755443
No 162
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.14 E-value=5.3e-06 Score=82.97 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCCccCCCccceE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+.+.+.++. +|||+|||+|.++..+++++.+|++ +|+++.|++.+.++ ..+.++++|+..+++++-.+|.|
T Consensus 34 i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~a--vE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 34 IVDAAGPQPGD--NVLEIGPGLGALTEPLLERAAKVTA--VEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred HHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCCcEEE--EECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceE
Confidence 33444555565 8999999999999999999888888 56667888887654 35889999999887654336899
Q ss_pred Eecccc
Q 012235 384 HTTGFM 389 (467)
Q Consensus 384 is~~~L 389 (467)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 988765
No 163
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.12 E-value=2.6e-05 Score=64.71 Aligned_cols=97 Identities=28% Similarity=0.428 Sum_probs=68.8
Q ss_pred EEEECCCccHHH--HHHhhCCCEEEEEecCCCHHHHHHHHHcC--C----ccEEEccCCC--CccCC-CccceEEecccc
Q 012235 321 GLDFGVGTGTFA--ARMREQNVTIVSTALNLGAPFNEMIALRG--L----IPLYVTLNQR--LPFFD-NTMDLIHTTGFM 389 (467)
Q Consensus 321 VLDIGCGtG~~a--~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~----i~~~~~d~~~--Lpf~d-~sFDlVis~~~L 389 (467)
++|+|||+|... ..+...+..+++ +|.+..++....... . +.+..++... +++.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 899999999854 333333346777 788887776643322 1 3567777665 77777 489999 65555
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.++.. ....+.++.++|+|+|.+++......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 45555 36899999999999999999776543
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.12 E-value=1.1e-05 Score=79.00 Aligned_cols=99 Identities=25% Similarity=0.300 Sum_probs=69.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH----HHHHHHcCC--ccEEEccCCCCc---cCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF----NEMIALRGL--IPLYVTLNQRLP---FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~----l~~a~~rg~--i~~~~~d~~~Lp---f~d~sFDlVis~~~L~ 390 (467)
.+||||||.|.+...+|+++.++.-+++++.... ++.+.+.+. +.++..|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD- 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD- 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC-
Confidence 8999999999999999999554333335544433 344444443 677777765542 445699999998865
Q ss_pred cccc------hhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLD------MLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~------~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.|.. .-....++..+.++|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5542 2222479999999999999999944
No 165
>PLN02672 methionine S-methyltransferase
Probab=98.11 E-value=1.4e-05 Score=93.08 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=82.6
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------------------CCccEEEccCCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------------------GLIPLYVTLNQRLPF 375 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------------------g~i~~~~~d~~~Lpf 375 (467)
+|||+|||+|.++..+++.. ..|++ +|+++.+++.+.++ ..+.++++|.....-
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~~~v~a--vDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLPSKVYG--LDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 79999999999999999873 56777 77888887776432 136788888654321
Q ss_pred C-CCccceEEeccccccc-------------------------c-------chh---hHHHHHHHHHhccCCCcEEEEEe
Q 012235 376 F-DNTMDLIHTTGFMDGW-------------------------L-------DML---LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 376 ~-d~sFDlVis~~~L~h~-------------------------~-------~~~---~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. ...||+|+|+-....- . +.. -++.++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2369999998542100 0 011 12567888999999999988744
Q ss_pred cccCCCCHHHHH-HHHHHcCcee-eEEEEc
Q 012235 420 FFCNKKDLDDYM-YMFLQFRYKK-HKWAIS 447 (467)
Q Consensus 420 ~~~~~~~~~~~~-~~i~~~Gf~~-l~W~~~ 447 (467)
-. ..-+.+. +++++.||+. ..|...
T Consensus 279 G~---~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 GG---RPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred Cc---cHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 22 2223666 5888889866 456543
No 166
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=2.7e-05 Score=76.34 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=64.4
Q ss_pred ceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCC--------cc------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGL--------IP------------------------ 364 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~--------i~------------------------ 364 (467)
..+|||||..|.++..+++. + -.+.| +|+.+..++.|.+.-. +.
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLG--vDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILG--VDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeE--eeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 36899999999999999987 4 34777 5555666777754210 00
Q ss_pred --------------EEEccCCCCccCCCccceEEecccc----ccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 365 --------------LYVTLNQRLPFFDNTMDLIHTTGFM----DGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 365 --------------~~~~d~~~Lpf~d~sFDlVis~~~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
++....+-+.+....||+|+|..+- -+|. ++++..++..+.+.|.|||+|++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwg-D~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWG-DDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccc-cHHHHHHHHHHHHhhCcCcEEEE
Confidence 0000001112335679999986543 1333 44688999999999999999998
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.06 E-value=4.1e-05 Score=78.74 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=92.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEc-cCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVT-LNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~-d~~~Lpf~d~s 379 (467)
+.++...++|+ .|||==||||++.....-.|..++| .|+...|++-+..+ +. ..++.. |+..+|+++++
T Consensus 189 mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG--~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 189 MVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIG--SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHhccccCC--EeecCcCCccHHHHhhhhcCceEee--cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 44555677887 8999999999999999988999999 56667777766543 21 334544 99999998889
Q ss_pred cceEEeccccc-----cccc-hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 380 MDLIHTTGFMD-----GWLD-MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 380 FDlVis~~~L~-----h~~~-~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+|.|++....- .-.. ++.+..+++.+.++||+||++++..+.. ........||+.+.
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------~~~~~~~~~f~v~~ 327 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------PRHELEELGFKVLG 327 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------chhhHhhcCceEEE
Confidence 99999864331 1111 3346789999999999999999976622 22445667786654
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.05 E-value=4.7e-05 Score=79.65 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=65.1
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc-CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF-FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..++.++..|++ +|+++.+++.++++ + .+.++.+|+..+.. ..++||+|+.+-.-...
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~~v~~--vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDTQLTG--IEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred EEEEccCCccHHHHHHhhcCCeEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 8999999999999999988888988 66667777766542 3 36788888765431 22469999998664211
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
. ..++..+. .++|++.++++
T Consensus 314 ~-----~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 314 G-----KELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred c-----HHHHHHHH-hcCCCeEEEEE
Confidence 1 24455554 47999988884
No 169
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.04 E-value=3.5e-05 Score=73.94 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=63.3
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCC-ccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRL-PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~L-pf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++.+ ...|++ +|.++.+.+.+.+ .+ .+.++.+|+... +...++||+|+++-....
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~--vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATL--LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 8999999999999865555 467888 5556666655543 23 266788876542 223457999999987522
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEec
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDRF 420 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~~ 420 (467)
-. .+.++..+.. +|+|+|.+++.+.
T Consensus 134 g~----~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 134 GL----LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred Ch----HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 11 2345555544 4899999888654
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.02 E-value=1.5e-05 Score=85.21 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=63.3
Q ss_pred ceEEEECCCccHHHHHHhhCC------CEEEEEecCCCHHHHHHH----HHc---CCccEEEccCCCCccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQN------VTIVSTALNLGAPFNEMI----ALR---GLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g------~~V~gvdiDiS~~~l~~a----~~r---g~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.+|||+|||+|.++...++.+ ..|++++- ++.+.... +.. +.|.++.+|++.+..+ ..+|+|+|
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk--n~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK--NPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES--STHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC--CHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 479999999999886665553 67888544 44333222 333 3489999999999874 48999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
-..= .+...+.....|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 6543 34455556678999999999999864
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.01 E-value=3.5e-05 Score=72.03 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-C-----CccEEEc-cCCCC--c-cCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-G-----LIPLYVT-LNQRL--P-FFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-g-----~i~~~~~-d~~~L--p-f~d~sFDlVis~ 386 (467)
++|||+|||+|..+..++.. +..|+.+|.+..-+.++...+. + .+.+..- |.... . ...+.||+|+++
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ilas 126 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILAS 126 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEe
Confidence 38999999999999999888 6789998877532333322222 1 2334332 33322 1 235689999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL 435 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~ 435 (467)
.+++. . ...+.++.-+.++|+|+|.+++...... +....+.++++
T Consensus 127 Dv~Y~-~--~~~~~L~~tl~~ll~~~~~vl~~~~~R~-~~~~~F~~~~~ 171 (173)
T PF10294_consen 127 DVLYD-E--ELFEPLVRTLKRLLKPNGKVLLAYKRRR-KSEQEFFDRLK 171 (173)
T ss_dssp S--S--G--GGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH-
T ss_pred cccch-H--HHHHHHHHHHHHHhCCCCEEEEEeCEec-HHHHHHHHHhh
Confidence 99953 2 3357899999999999999777654442 22235666554
No 172
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=8.9e-05 Score=71.33 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=89.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~sFD 381 (467)
+.++. .|+|+|+-.|.++..++++ +..|+++|++...+. ..+.++++|+..-+ +....+|
T Consensus 43 ~~~~~--~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 43 FKPGM--VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred ecCCC--EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 44555 8999999999999999887 334899777643321 12677788765443 2334579
Q ss_pred eEEecccc--------ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC---C
Q 012235 382 LIHTTGFM--------DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK---S 450 (467)
Q Consensus 382 lVis~~~L--------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k---~ 450 (467)
+|+|..+. .|.........++.-...+|+|||.|++-.|-. ++.+.+...+++. |+.++-....- .
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~~~~-F~~v~~~KP~aSR~~ 190 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKALRRL-FRKVKIFKPKASRKR 190 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHHHHh-hceeEEecCccccCC
Confidence 99987655 333333323456666778999999999977654 3445677777766 77766543322 3
Q ss_pred CCceEEEEEe
Q 012235 451 KDEVYLSALL 460 (467)
Q Consensus 451 ~devyl~avl 460 (467)
..|+|+.+.-
T Consensus 191 S~E~y~v~~~ 200 (205)
T COG0293 191 SREIYLVAKG 200 (205)
T ss_pred CceEEEEEec
Confidence 4478887644
No 173
>PLN02476 O-methyltransferase
Probab=97.98 E-value=5.6e-05 Score=76.09 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=74.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCC-Cc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQR-LP- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~-Lp- 374 (467)
+..++...... +|||||+|+|+.+.+++.. +..+++ +|.++...+.+++ .| .+.++.+++.. ++
T Consensus 110 L~~L~~~~~ak--~VLEIGT~tGySal~lA~al~~~G~V~T--iE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 110 LAMLVQILGAE--RCIEVGVYTGYSSLAVALVLPESGCLVA--CERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHhcCCC--eEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 34444554444 8999999999999999874 345777 5555555555532 33 37788888643 22
Q ss_pred c----CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 375 F----FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 375 f----~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+ ..++||+|+....- ......+..+.+.|+|||.+++++..+..
T Consensus 186 l~~~~~~~~FD~VFIDa~K------~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK------RMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred HHhcccCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 1 14689999976542 22467889999999999999998766544
No 174
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.91 E-value=0.00025 Score=76.35 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=80.7
Q ss_pred HHHHh--cCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCCc-
Q 012235 307 ISDIL--AIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRLP- 374 (467)
Q Consensus 307 I~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~Lp- 374 (467)
...++ ...+++ +|||+++|.|.=+..+++. ...+++ .|+++..++.+. +-|. +.+...|...++
T Consensus 103 ~~~~L~~~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA--~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~ 178 (470)
T PRK11933 103 PVAALFADDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVA--NEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA 178 (470)
T ss_pred HHHHhccCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh
Confidence 34455 556776 8999999999988888876 236777 555555444443 2343 455566766553
Q ss_pred cCCCccceEE----ecc--ccc-------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIH----TTG--FMD-------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVi----s~~--~L~-------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
...+.||.|+ |+. ++. .|... ..-..+|..+.+.|||||+++.++.....++.+ .+..++
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L 258 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLK 258 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3356899999 432 121 12111 011478889999999999999988776655544 444455
Q ss_pred HHc
Q 012235 435 LQF 437 (467)
Q Consensus 435 ~~~ 437 (467)
++.
T Consensus 259 ~~~ 261 (470)
T PRK11933 259 ETY 261 (470)
T ss_pred HHC
Confidence 554
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.89 E-value=5.8e-05 Score=76.58 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=61.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
|.+.+.+.+++ +|||||||+|.++..+++.+..|++ +|+++.+++.+.++ +.+.++.+|+...++ ..
T Consensus 28 Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~a--vEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 28 IVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIA--IEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEE--EECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 33444566665 8999999999999999999888988 55667777766542 347889999877654 46
Q ss_pred cceEEeccccccccch
Q 012235 380 MDLIHTTGFMDGWLDM 395 (467)
Q Consensus 380 FDlVis~~~L~h~~~~ 395 (467)
||.|+++... ++..+
T Consensus 102 ~d~VvaNlPY-~Istp 116 (294)
T PTZ00338 102 FDVCVANVPY-QISSP 116 (294)
T ss_pred cCEEEecCCc-ccCcH
Confidence 8999998776 66655
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.6e-05 Score=73.27 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=71.6
Q ss_pred HHHhc--CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHH----------------HcCCccE
Q 012235 308 SDILA--IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIA----------------LRGLIPL 365 (467)
Q Consensus 308 ~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~----------------~rg~i~~ 365 (467)
.+.|. +.+|- ..||+|.|+|+++..++.. |..++| ++.-++.++... +++.+.+
T Consensus 73 le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~G--IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 73 LEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHG--IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 34444 66776 8899999999998877743 444466 555454444432 2345678
Q ss_pred EEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 366 YVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 366 ~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+++|....--+...||.|++.... ....+++...|+|||.+++
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEE
Confidence 899988877778899999998665 3677888899999999998
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.88 E-value=0.00027 Score=72.57 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=72.7
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----c-CC---ccEEE-ccCCCCc----cCCCccceE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----R-GL---IPLYV-TLNQRLP----FFDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----r-g~---i~~~~-~d~~~Lp----f~d~sFDlV 383 (467)
.+|||||||+|.+...++.+ +..++++| +++.+++.|++ . +. +.+.+ .+...+. .+++.||+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atD--Id~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSD--IDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEe--CCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 48999999999888777765 77888854 55666666543 2 22 44433 2322221 236789999
Q ss_pred EeccccccccchhhH---HHHHHH----------------HHhccCCCcEEEEE------------------ecccCCCC
Q 012235 384 HTTGFMDGWLDMLLL---DFILFD----------------WDRILRPGGLLWID------------------RFFCNKKD 426 (467)
Q Consensus 384 is~~~L~h~~~~~~l---~~~L~e----------------l~RvLKPGG~LiI~------------------~~~~~~~~ 426 (467)
+|+-.++ -...+.. ..-... ..+++.+||.+.+. ++....+.
T Consensus 194 vcNPPf~-~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 194 LCNPPFH-ASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EeCCCCc-CcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCC
Confidence 9998873 2222100 011111 23445678877443 44445557
Q ss_pred HHHHHHHHHHcCceee
Q 012235 427 LDDYMYMFLQFRYKKH 442 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l 442 (467)
+..+.+.+++.|...+
T Consensus 273 l~~l~~~L~~~~~~~~ 288 (321)
T PRK11727 273 LPPLYRALKKVGAVEV 288 (321)
T ss_pred HHHHHHHHHHcCCceE
Confidence 7788888888888444
No 178
>PRK04148 hypothetical protein; Provisional
Probab=97.88 E-value=0.00012 Score=66.13 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=67.6
Q ss_pred ceEEEECCCccH-HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGT-FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~-~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~ 396 (467)
.++||||||+|. ++..|++.|.+|++ +|+++.+++.+++.+ +.++.+|..+-++. -+.+|+|.+.....
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~Via--IDi~~~aV~~a~~~~-~~~v~dDlf~p~~~~y~~a~liysirpp~------ 88 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIV--IDINEKAVEKAKKLG-LNAFVDDLFNPNLEIYKNAKLIYSIRPPR------ 88 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEE--EECCHHHHHHHHHhC-CeEEECcCCCCCHHHHhcCCEEEEeCCCH------
Confidence 379999999996 99999999999999 666677788887776 68889987765532 36799999988762
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+...+.++.+-+ |.-++|..+..
T Consensus 89 el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 89 DLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 1334555555543 45566655443
No 179
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.88 E-value=7.4e-05 Score=72.73 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC---ccEEE-ccCCC-C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL---IPLYV-TLNQR-L 373 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~---i~~~~-~d~~~-L 373 (467)
++..++...... +||+||.+.|+-+.+|+.. ..++++ +|..+++.+.|++. |. +.++. +|+.+ +
T Consensus 50 ~L~~L~~~~~~k--~iLEiGT~~GySal~mA~~l~~~g~l~t--iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 50 LLRLLARLSGPK--RILEIGTAIGYSALWMALALPDDGRLTT--IERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHhcCCc--eEEEeecccCHHHHHHHhhCCCCCeEEE--EeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 455555555444 8999999999999999876 345666 66667777776542 32 55666 35322 2
Q ss_pred c-cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 374 P-FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 374 p-f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
. ...++||+|+....-. . ...++..+.+.|+|||.++++....+.
T Consensus 126 ~~~~~~~fDliFIDadK~----~--yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 126 SRLLDGSFDLVFIDADKA----D--YPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred HhccCCCccEEEEeCChh----h--CHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 2 4579999999765442 2 357899999999999999998776653
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.87 E-value=3.7e-05 Score=74.16 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=69.8
Q ss_pred ceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcC---CccEEEccCCCC-c-----cCCCccce
Q 012235 319 RIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRG---LIPLYVTLNQRL-P-----FFDNTMDL 382 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg---~i~~~~~d~~~L-p-----f~d~sFDl 382 (467)
++||+||+++|+-+.+|++. +.+++++ |..+...+.|+ +.| .+.++.+++... + ...++||+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~ti--E~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTI--EIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEE--ESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEe--cCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 38999999999999999975 5688884 45555555553 223 478899886432 2 11358999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
|+....-. .....+..+.+.|+|||.+++++....
T Consensus 125 VFiDa~K~------~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDADKR------NYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEESTGG------GHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEccccc------chhhHHHHHhhhccCCeEEEEcccccc
Confidence 99876542 245678888999999999999876653
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.85 E-value=0.00012 Score=68.15 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=81.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCE---EEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCc-----cCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVT---IVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLP-----FFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~---V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lp-----f~d~sFDlVis~~~L 389 (467)
.-||++|.|||.++.++.++|+. +++ ++.+.+......+... +.++.+|+.++. +.+..||.|+|...+
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~--iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTA--IEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEE--EEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 37999999999999999999753 455 7778888888877643 778889887775 557789999998887
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..++... .-.+++++...|++||.++-.++..
T Consensus 128 l~~P~~~-~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHR-RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 6666553 3578999999999999999877763
No 182
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.80 E-value=0.00012 Score=70.78 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=85.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc---CCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF---FDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~~~~~ 396 (467)
++|||||=+......-. .-..|+.+|++... -.+.+.|....|. +.+.||+|.++.+|...+++.
T Consensus 54 rlLEVGals~~N~~s~~-~~fdvt~IDLns~~-----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTS-GWFDVTRIDLNSQH-----------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred eEEeecccCCCCccccc-CceeeEEeecCCCC-----------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 78999987654433221 13457776665322 3566777777665 367899999999997777777
Q ss_pred hHHHHHHHHHhccCCCcE-----EEEEeccc-CCC----CHHHHHHHHHHcCceeeEEEEccC
Q 012235 397 LLDFILFDWDRILRPGGL-----LWIDRFFC-NKK----DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~-----LiI~~~~~-~~~----~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
..-..+..+.+.|+|+|. |+++.+.. ..+ +.+.+.++++.+||..++-....|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 777899999999999999 88876543 222 345889999999999988765544
No 183
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00048 Score=68.78 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEcc-----CCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTL-----NQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d-----~~~Lpf~d~sFDlVis~~ 387 (467)
.+||+|||+|..+..++..-.+++.+++|.|+.++..+.++ |.+.+++-+ ....+...+.+|+++||-
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 79999999999999998773344445588888888777543 445555332 233345679999999985
Q ss_pred cccccc-----------------------chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 388 FMDGWL-----------------------DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 388 ~L~h~~-----------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
....-. ..+.+..++.-+.|.|+|||.+++..-..
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 432100 01123356677889999999999865433
No 184
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.77 E-value=0.00026 Score=70.93 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=69.0
Q ss_pred HHhcCCCCCCceEEEECCCcc----HHHHHHhhC-------CCEEEEEecCCCHHHHHHHHH---------c--------
Q 012235 309 DILAIKPGETRIGLDFGVGTG----TFAARMREQ-------NVTIVSTALNLGAPFNEMIAL---------R-------- 360 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG----~~a~~La~~-------g~~V~gvdiDiS~~~l~~a~~---------r-------- 360 (467)
.++....+..-+|+-+||+|| ++|..|.+. .+.|.++| ++..+++.|.. +
T Consensus 88 ~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtD--Id~~~L~~A~~G~Y~~~~~~~~~~~~~~~ 165 (268)
T COG1352 88 ELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATD--IDLSVLEKARAGIYPSRELLRGLPPELLR 165 (268)
T ss_pred HHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEE--CCHHHHHHHhcCCCChhHhhccCCHHHHh
Confidence 344333323347899999999 444444444 25566754 55556665532 1
Q ss_pred ------------------CCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 361 ------------------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 361 ------------------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..|.|...+...-++..+.||+|+|-.++..+..+ ....++..++..|+|||+|++.
T Consensus 166 ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~-~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 166 RYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE-TQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred hhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHH-HHHHHHHHHHHHhCCCCEEEEc
Confidence 11334444433333356789999999999555444 4589999999999999999994
No 185
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.77 E-value=5.6e-05 Score=78.80 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=78.6
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH-------cCCccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL-------RGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~-------rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
...++. .++|+|||.|.....++.. +..++| ++.++........ .....++.+|....|+++++||.|
T Consensus 107 ~~~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~G--l~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGS--KVLDVGTGVGGPSRYIAVFKKAGVVG--LDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccc--cccccCcCcCchhHHHHHhccCCccC--CCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 355665 6899999999999999876 466777 6666543333221 122446888999999999999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+..+..|..+. ..++.|++|+++|||+++..+
T Consensus 183 ~~ld~~~~~~~~---~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 183 RFLEVVCHAPDL---EKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred EEEeecccCCcH---HHHHHHHhcccCCCceEEeHH
Confidence 999999777776 689999999999999998754
No 186
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.75 E-value=0.00099 Score=67.21 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=89.1
Q ss_pred CCceEEEECCCccHHHHHHhhC-C---CEEEEEecCCCHHHHHH----HHHcCC---ccEEEccCCCCc---cCCCccce
Q 012235 317 ETRIGLDFGVGTGTFAARMREQ-N---VTIVSTALNLGAPFNEM----IALRGL---IPLYVTLNQRLP---FFDNTMDL 382 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~-g---~~V~gvdiDiS~~~l~~----a~~rg~---i~~~~~d~~~Lp---f~d~sFDl 382 (467)
..-+||||.||.|.+.....+. . ..|.- .|.++..++. ++++|+ +.|.++|+.+.. --+-..++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~L--rDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILL--RDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEE--EeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 3347999999999877666655 2 23444 5677766544 456665 488999876542 22445799
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcCce
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFRYK 440 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~Gf~ 440 (467)
++.+..++-+.+...+...+..+.+++.|||+++.+.-.++.. +..+.-++++..||+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 9999999889988878889999999999999999975322221 123566677777777
Q ss_pred eeEEE
Q 012235 441 KHKWA 445 (467)
Q Consensus 441 ~l~W~ 445 (467)
++.-.
T Consensus 293 K~~q~ 297 (311)
T PF12147_consen 293 KIDQR 297 (311)
T ss_pred hhhhe
Confidence 66443
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.73 E-value=6.5e-05 Score=81.68 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=69.0
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHH----HHHcCC--ccEEEccCCCCc--cCCCccceEEecc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEM----IALRGL--IPLYVTLNQRLP--FFDNTMDLIHTTG 387 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~----a~~rg~--i~~~~~d~~~Lp--f~d~sFDlVis~~ 387 (467)
...+||||||.|.+...+|... ..++| +++....+.. +.+.+. +.++..++..+. ++++++|.|+.++
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iG--iE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIG--VEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEE--EEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3489999999999999999885 45666 5554443333 333443 445555654332 6789999999988
Q ss_pred ccccccch------hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 388 FMDGWLDM------LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.= .|+.. -.-..++..+.++|||||.+.+.+
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 76 55421 112479999999999999999843
No 188
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.73 E-value=0.00025 Score=72.92 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=74.6
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH-Hc-CCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-LR-GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~-~r-g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
....+|+|.|.|..+..+...-..+-+++.|.. .+..++ .- ..|..+.+|...- .|.+ |+|+.-++++||.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp--~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP--FVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDE 252 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHH--HHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChH
Confidence 458999999999999999987666777656643 332222 22 2266777775443 3333 599999999999987
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+ ..++|+++...|+|||.+++.+...+
T Consensus 253 d-cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 253 D-CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred H-HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 5 68999999999999999999877544
No 189
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00015 Score=68.90 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=72.9
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|+|+|||||.++...+-.| ..|+++|+| +++++.++++ +.+.++++|..++ .+.+|.|+.|-.+--+.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcccc
Confidence 79999999999999998887 678896665 5555555432 3488999998887 56789999987764333
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee-eEEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK-HKWAI 446 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~-l~W~~ 446 (467)
...+ ..++....++-+ ++.+... ....+-+.+.....|+.. +.|.+
T Consensus 123 rhaD-r~Fl~~Ale~s~-----vVYsiH~-a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 123 RHAD-RPFLLKALEISD-----VVYSIHK-AGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccCC-HHHHHHHHHhhh-----eEEEeec-cccHHHHHHHHHhcCCeEEEEEEE
Confidence 2222 234444444431 2211111 123445666778888643 45543
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.69 E-value=0.00014 Score=68.41 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCE---------EEEEecCCCHHHHHHHHHc----C---CccEEE
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVT---------IVSTALNLGAPFNEMIALR----G---LIPLYV 367 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~---------V~gvdiDiS~~~l~~a~~r----g---~i~~~~ 367 (467)
.+..+....++. .|||--||+|++....+.. +.. ++| .|+++.+++.+.++ + .+.+.+
T Consensus 19 ~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g--~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 19 ALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIG--SDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEE--EESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEe--cCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 344555566666 8999999999998766554 333 567 66667777666542 2 267888
Q ss_pred ccCCCCccCCCccceEEeccccccc-c----chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 368 TLNQRLPFFDNTMDLIHTTGFMDGW-L----DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 368 ~d~~~Lpf~d~sFDlVis~~~L~h~-~----~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.|+..+++.++++|.|+++...-.- . ...-...++.++.|+|++...+++.. .. .+.+.+...+++..
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~----~~---~~~~~~~~~~~~~~ 167 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS----NR---ELEKALGLKGWRKR 167 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES----CC---CHHHHHTSTTSEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC----CH---HHHHHhcchhhceE
Confidence 9999999888999999998765211 1 12234577899999999944444421 22 24455555555554
Q ss_pred EE
Q 012235 443 KW 444 (467)
Q Consensus 443 ~W 444 (467)
+-
T Consensus 168 ~~ 169 (179)
T PF01170_consen 168 KL 169 (179)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 191
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.67 E-value=0.00043 Score=68.98 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=58.3
Q ss_pred EEEccCCCCc-cCC-----CccceEEecccccccc-chhhHHHHHHHHHhccCCCcEEEEEecccC-------------C
Q 012235 365 LYVTLNQRLP-FFD-----NTMDLIHTTGFMDGWL-DMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------K 424 (467)
Q Consensus 365 ~~~~d~~~Lp-f~d-----~sFDlVis~~~L~h~~-~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------~ 424 (467)
++..|....+ +.+ ..||+|++.++++... +.+....++.++.++|||||.|++...... .
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 5556655443 322 3599999999997654 555678899999999999999999643321 1
Q ss_pred CCHHHHHHHHHHcCceeeEEEE
Q 012235 425 KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 425 ~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
-+.+.+.+.++..||....+..
T Consensus 218 l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CCHHHHHHHHHHcCCEEEeccc
Confidence 2456888999999999888873
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00034 Score=69.70 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=70.6
Q ss_pred ccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEE
Q 012235 291 EKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLY 366 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~ 366 (467)
-+|+|+. .... -..|.+..++.+++ +||+||+|.|.++..|++++..|+++++| ..+.+..+++ +.+.++
T Consensus 8 ~GQnFL~-d~~v-~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~n~~vi 81 (259)
T COG0030 8 LGQNFLI-DKNV-IDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFAPYDNLTVI 81 (259)
T ss_pred ccccccc-CHHH-HHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcccccceEEE
Confidence 3455665 2222 22344455566655 89999999999999999999999996666 4555555544 458899
Q ss_pred EccCCCCccCCC-ccceEEeccccccccch
Q 012235 367 VTLNQRLPFFDN-TMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 367 ~~d~~~Lpf~d~-sFDlVis~~~L~h~~~~ 395 (467)
++|+...+++.- .++.|+++... +...+
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY-~Issp 110 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPY-NISSP 110 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCC-cccHH
Confidence 999998888654 68999998876 55554
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.59 E-value=0.00078 Score=69.54 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=71.8
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccccccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.++. ++||+||++|.|+..|.++|..|+++| .+ ++...+...+.+..+..+..++....+.+|+|+|..+-.
T Consensus 210 ~~g~--~vlDLGAsPGGWT~~L~~rG~~V~AVD--~g-~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~--- 281 (357)
T PRK11760 210 APGM--RAVDLGAAPGGWTYQLVRRGMFVTAVD--NG-PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK--- 281 (357)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHcCCEEEEEe--ch-hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---
Confidence 4555 899999999999999999999999955 32 355555666678888887666543367899999988752
Q ss_pred chhhHHHHHHHHHhccCCC--cEEEEEecccCCCCHH
Q 012235 394 DMLLLDFILFDWDRILRPG--GLLWIDRFFCNKKDLD 428 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPG--G~LiI~~~~~~~~~~~ 428 (467)
+ ..+..-+.+.|..| ..+++.--+..+...+
T Consensus 282 -P---~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~ 314 (357)
T PRK11760 282 -P---ARVAELMAQWLVNGWCREAIFNLKLPMKKRYE 314 (357)
T ss_pred -H---HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHH
Confidence 2 35666666777665 4555544444444433
No 194
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.55 E-value=0.00029 Score=69.85 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcC---CccEEEccCCCC-cc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRG---LIPLYVTLNQRL-PF 375 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg---~i~~~~~d~~~L-pf 375 (467)
+..++...... +||+||+++|+-+.+|+.. +..+++++.| +...+.|+ +.| .|.++.+++... +-
T Consensus 71 L~~l~~~~~ak--~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 71 LNMLLKLINAK--NTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHhCCC--EEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHH
Confidence 33444443333 8999999999999988864 4578885554 55444443 333 378888875432 21
Q ss_pred ------CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 376 ------FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 376 ------~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..++||+|+...--. .....+..+.+.|+|||.++++...+.
T Consensus 147 l~~~~~~~~~fD~iFiDadK~------~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDADKD------NYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred HHhccccCCcccEEEecCCHH------HhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 136899999765432 235677888899999999999866543
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.54 E-value=0.0011 Score=69.11 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=61.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-c-cC--------------C
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-P-FF--------------D 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-p-f~--------------d 377 (467)
+|||++||+|.++..+++....|++ +|.++.+++.++++ + .+.++.+|+..+ + +. .
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~--vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLA--TEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEE--EECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 6999999999999999988778888 67778888777543 3 367888886553 1 10 1
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..||+|+..-.-..+ . +.++..+.+ |++.++++
T Consensus 287 ~~~D~v~lDPPR~G~-~----~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 287 YNFSTIFVDPPRAGL-D----DETLKLVQA---YERILYIS 319 (362)
T ss_pred CCCCEEEECCCCCCC-c----HHHHHHHHc---cCCEEEEE
Confidence 258999987654211 1 345555544 68887773
No 196
>PLN02823 spermine synthase
Probab=97.50 E-value=0.0016 Score=67.40 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
.++||.||+|.|..+..+.+. + ..++. +|+.+.+++.+++. ..+.++.+|+..+ ...+++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~--VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVM--CDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEE--EECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 458999999999999988875 2 45777 55557777777642 2367788886553 33457899999
Q ss_pred ecccccccc---c-hhhHHHHHH-HHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWL---D-MLLLDFILF-DWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~---~-~~~l~~~L~-el~RvLKPGG~LiI~ 418 (467)
.... ..+. . .-.-..+++ .+.+.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8732 1110 0 000135777 899999999998774
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.48 E-value=0.0013 Score=66.01 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=82.4
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH---H----cC------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA---L----RG------------------------------ 361 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~---~----rg------------------------------ 361 (467)
.+||-=|||.|+++..++.+|..+.| .+.|--|+-... . .+
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~g--nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQG--NEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEE--EEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 47999999999999999999999999 555555532210 0 00
Q ss_pred ---------CccEEEccCCCCccCC---CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc-----cC-
Q 012235 362 ---------LIPLYVTLNQRLPFFD---NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-----CN- 423 (467)
Q Consensus 362 ---------~i~~~~~d~~~Lpf~d---~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-----~~- 423 (467)
.+....+|...+...+ ++||.|++.+.+. -..+ +-..+..+.++|||||+++=..+. ..
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~N--i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAEN--IIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHH--HHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0112333433333333 6899999987762 2222 468899999999999964433221 11
Q ss_pred -------CCCHHHHHHHHHHcCceeeEEEE
Q 012235 424 -------KKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 424 -------~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.-..+++..+++++||+.++...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11356899999999999888766
No 198
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.42 E-value=0.0011 Score=63.02 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=60.5
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCC-c-c-CCC-ccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRL-P-F-FDN-TMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~L-p-f-~d~-sFDlVis~~ 387 (467)
+|||++||+|.++..++.+|. .|++ +|.+..+++.+.+ .+ .+.++.+|+... . . ... .||+|+..-
T Consensus 52 ~vLDLfaGsG~lglea~srga~~v~~--vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAKVAFL--EEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 899999999999999999986 6777 5555666555533 22 356788887432 2 1 122 377777765
Q ss_pred ccccccchhhHHHHHHHH--HhccCCCcEEEEEe
Q 012235 388 FMDGWLDMLLLDFILFDW--DRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~ 419 (467)
.+. ... ...++..+ ..+|+++|.+++.+
T Consensus 130 Py~-~~~---~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFF-NGA---LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC-CCc---HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 552 211 23444444 34789999888744
No 199
>PRK00536 speE spermidine synthase; Provisional
Probab=97.41 E-value=0.0012 Score=65.94 Aligned_cols=110 Identities=9% Similarity=-0.053 Sum_probs=72.2
Q ss_pred CCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCccCCCccceEEec
Q 012235 317 ETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
..++||=||.|.|..++.+.+...+|+-+++| +..++.+++- ..++++.. .. ....++||+|+..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 35699999999999999999986678775555 5666666541 12444431 11 1124789999988
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe--cccCCCCHHHHHHHHHHcCce
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR--FFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
... + +.+.+.+.|+|+|||.++... ++...+......+.+++. |.
T Consensus 147 s~~-----~---~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~-F~ 193 (262)
T PRK00536 147 QEP-----D---IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDF-FS 193 (262)
T ss_pred CCC-----C---hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhh-CC
Confidence 653 1 467899999999999998843 333332233444455553 65
No 200
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.40 E-value=0.0024 Score=66.47 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=60.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC----------C------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF----------D------ 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~----------d------ 377 (467)
+|||+|||+|.++..+++....|++ +|.++.+++.+.++ + .+.++.+|+.++--. .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~--vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLA--TEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 6999999999999999988778888 77778888777653 3 366888886553210 1
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..||+|+..-.-..+ . +.++..+.+ |++.+++
T Consensus 278 ~~~d~v~lDPPR~G~-~----~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL-D----PDTCKLVQA---YERILYI 309 (353)
T ss_pred CCCCEEEECCCCCCC-c----HHHHHHHHc---CCcEEEE
Confidence 137999886653111 1 245555544 7888888
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.36 E-value=0.00033 Score=67.39 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=59.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHH----Hc---CCccEEEccCCCCccCCCccceE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIA----LR---GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~----~r---g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
..+++ +|+|+-||-|.|+..+++ ++..|+++ |+.+.+.+.+. .+ +.+..+.+|+..+.. .+.||.|
T Consensus 99 v~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~--d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAV--DLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT---EEEETT-TTTTTHHHHHHHT-SSEEEEE--ES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcce--EEEEccCCccHHHHHHhhhcCccEEEEe--cCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 45666 999999999999999998 57789994 45555544443 22 236778899888765 7899999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
+++..-. . ..++..+.+++|+||.+-
T Consensus 174 im~lp~~--~-----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPES--S-----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSS--G-----GGGHHHHHHHEEEEEEEE
T ss_pred EECChHH--H-----HHHHHHHHHHhcCCcEEE
Confidence 9876531 1 257888999999999763
No 202
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0067 Score=63.23 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHH----HHcCC--ccEEEccCCCCc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMI----ALRGL--IPLYVTLNQRLP 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a----~~rg~--i~~~~~d~~~Lp 374 (467)
.+...+++..+|+ +|||+.++.|.=+.++++. +..|++ +|.++.-++.+ .+-|. +..+..|...++
T Consensus 146 ~l~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A--~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~ 221 (355)
T COG0144 146 QLPALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVA--VDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA 221 (355)
T ss_pred HHHHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEE--EcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence 3455677888887 9999999999877777766 345677 55555444433 33343 346667766554
Q ss_pred ---cCCCccceEEec------ccccc-----c--cch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHH
Q 012235 375 ---FFDNTMDLIHTT------GFMDG-----W--LDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYM 431 (467)
Q Consensus 375 ---f~d~sFDlVis~------~~L~h-----~--~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~ 431 (467)
...+.||.|+.. +++.. | ... .....+|....+.|||||.|+.++.....++.+ ...
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~ 301 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVE 301 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHH
Confidence 222359999952 22210 1 110 112478899999999999999998877655544 555
Q ss_pred HHHHHc
Q 012235 432 YMFLQF 437 (467)
Q Consensus 432 ~~i~~~ 437 (467)
.++++.
T Consensus 302 ~~L~~~ 307 (355)
T COG0144 302 RFLERH 307 (355)
T ss_pred HHHHhC
Confidence 666654
No 203
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.0019 Score=61.39 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CC--EEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCC--------ccCCCcc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NV--TIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRL--------PFFDNTM 380 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~--~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~L--------pf~d~sF 380 (467)
+.+++ +|||+||..|.++....++ +. -|.| +|+-. ...-+| +.++.+ |..+- ..++...
T Consensus 67 l~p~~--~VlD~G~APGsWsQVavqr~~p~g~v~g--VDllh----~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 67 LRPED--TVLDCGAAPGSWSQVAVQRVNPNGMVLG--VDLLH----IEPPEG-ATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred cCCCC--EEEEccCCCChHHHHHHHhhCCCceEEE--Eeeee----ccCCCC-cccccccccCCHHHHHHHHHhCCCCcc
Confidence 45666 9999999999999988877 33 4556 44311 111122 223333 32211 1356889
Q ss_pred ceEEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee---EEEEccC
Q 012235 381 DLIHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH---KWAISPK 449 (467)
Q Consensus 381 DlVis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l---~W~~~~k 449 (467)
|+|+|..... |....+.-..++.-....++|+|.|++-.+... +...+...+... |..+ +-....+
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~--e~~~l~r~l~~~-f~~Vk~vKP~Asr~ 214 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS--EEALLQRRLQAV-FTNVKKVKPDASRD 214 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC--chHHHHHHHHHH-hhhcEeeCCccccc
Confidence 9999876542 211111112344445567789999988665433 333455555544 5444 4444445
Q ss_pred CCCceEEEEEeecCC
Q 012235 450 SKDEVYLSALLEKPP 464 (467)
Q Consensus 450 ~~devyl~avlqKP~ 464 (467)
...|.|+.+.-.|+-
T Consensus 215 eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 215 ESAETYLVCLNFKGN 229 (232)
T ss_pred cccceeeeeeeccCc
Confidence 666889988776664
No 204
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.27 E-value=0.00084 Score=68.67 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=73.0
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
++|||+|||+|.++...++.|. .|++++ .| +|.+.+++ +. .|.++.+-.++..+ ++..|+|++--.-.
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAvE--AS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAVE--AS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEEe--hh-HHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 5899999999999998888864 577744 32 45555543 22 26777788888777 57799999865443
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe--ccc-CCCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR--FFC-NKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~--~~~-~~~~~~~~~~~i~~~Gf 439 (467)
...+...++..+ ...|.|||.|.++=.. ... +-.+..-+.+.+.+..|
T Consensus 255 mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 255 MLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred hhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 344444444433 4559999999875321 111 11122356666665533
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.26 E-value=0.0014 Score=62.14 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred eEEEECCCccHHHHHHh--hCCCEEEEEecCCCHHH---HHHHH-HcC--CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMR--EQNVTIVSTALNLGAPF---NEMIA-LRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La--~~g~~V~gvdiDiS~~~---l~~a~-~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+++|||+|.|.-+..++ ....+++- +|....- ++.+. +-+ ++.++++.++. +....+||+|++-.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC-
Confidence 69999999996665555 34667777 5555533 33332 223 37788887777 55678999999987652
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+..++.-+...|++||.+++.--....++.+.....+...+.+.
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 35788888999999999888432222222223444444444433
No 206
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.22 E-value=0.0089 Score=58.36 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=95.1
Q ss_pred ccccccccCCcChHHHHHH---HhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCH----HHHHHHHHc
Q 012235 291 EKPKWVANRSVPVDFLISD---ILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGA----PFNEMIALR 360 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~---lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~----~~l~~a~~r 360 (467)
+-+.|.- ........|.. -+.+++|. +||-+|+.+|+...++++- .-.|++ ++.|+ ..+..+.+|
T Consensus 47 eYR~W~P-~RSKLaAai~~Gl~~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYa--VEfs~r~~rdL~~la~~R 121 (229)
T PF01269_consen 47 EYRVWNP-FRSKLAAAILKGLENIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYA--VEFSPRSMRDLLNLAKKR 121 (229)
T ss_dssp EEEEE-T-TT-HHHHHHHTT-S--S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHS
T ss_pred ceeecCc-hhhHHHHHHHcCccccCCCCCC--EEEEecccCCCccchhhhccCCCCcEEE--EEecchhHHHHHHHhccC
Confidence 5567765 33323333322 23466777 9999999999999888876 336777 66666 456667788
Q ss_pred CCccEEEccCCCCc---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHHHHHH-
Q 012235 361 GLIPLYVTLNQRLP---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLDDYMY- 432 (467)
Q Consensus 361 g~i~~~~~d~~~Lp---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~~~~~- 432 (467)
.++--+..|+..-. ..-+.+|+|++.-+- ++..+.++.++...||+||.++++--.. ..+..+.+.+
T Consensus 122 ~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ-----p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e 196 (229)
T PF01269_consen 122 PNIIPILEDARHPEKYRMLVEMVDVIFQDVAQ-----PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEE 196 (229)
T ss_dssp TTEEEEES-TTSGGGGTTTS--EEEEEEE-SS-----TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHH
T ss_pred CceeeeeccCCChHHhhcccccccEEEecCCC-----hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHH
Confidence 87555566655321 123479999886553 3335678899999999999999865331 1222224444
Q ss_pred --HHHHcCceeeEEEEcc-CCCCceEEEEEeec
Q 012235 433 --MFLQFRYKKHKWAISP-KSKDEVYLSALLEK 462 (467)
Q Consensus 433 --~i~~~Gf~~l~W~~~~-k~~devyl~avlqK 462 (467)
.++..||+.+.-.... ..++...+.+.++|
T Consensus 197 ~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 197 VKKLKEEGFKPLEQITLEPYERDHAMVVGRYRK 229 (229)
T ss_dssp HHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE--
T ss_pred HHHHHHcCCChheEeccCCCCCCcEEEEEEecC
Confidence 4444578777655443 36777777777665
No 207
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.15 E-value=0.0013 Score=69.27 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=64.2
Q ss_pred eEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||++||+|.++..++.. + ..|++ +|+++.+++.++++ +. +.++.+|+..+....+.||+|+..-.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a--~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTL--NDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 7999999999999999865 4 36777 66667777666532 32 44777787654221467999998642
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
... ..++....+.+++||.++++
T Consensus 135 -Gs~---~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP---APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc---HHHHHHHHHHhcCCCEEEEE
Confidence 111 35777777889999999996
No 208
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.0059 Score=63.26 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=88.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.+|+ +|||+=+|-|.|+..++..|.. |++ +|+++.+.+.+.+ ++ .+..+++|+..++..-+.+|-|+.
T Consensus 187 ~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A--~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 187 KEGE--TVLDMFAGVGPFSIPIAKKGRPKVYA--IDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred cCCC--EEEEccCCcccchhhhhhcCCceEEE--EecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEe
Confidence 3477 9999999999999999999766 887 5566666555543 22 267889999888776689999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCC----HHHHHHHHHHcCc--eeeEEEEccC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD----LDDYMYMFLQFRY--KKHKWAISPK 449 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~----~~~~~~~i~~~Gf--~~l~W~~~~k 449 (467)
+.... ...++....+.+++||.+-+-++....+. ...+.....+.|+ ..+.|.....
T Consensus 263 ~~p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vks 325 (341)
T COG2520 263 GLPKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKS 325 (341)
T ss_pred CCCCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecc
Confidence 87652 13678888899999999888766655442 2244445555554 4455554444
No 209
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.0022 Score=62.59 Aligned_cols=111 Identities=21% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHH--HHHHHHcC---CccEEEccCCC-Cc--
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPF--NEMIALRG---LIPLYVTLNQR-LP-- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~--l~~a~~rg---~i~~~~~d~~~-Lp-- 374 (467)
.+..++.+...+ ++||||.=||+-+..+|.. +-.|+++|+|..... .+..+..| .+.++++.+.+ ++
T Consensus 64 fl~~li~~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 64 FLQMLIRLLNAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 344555555444 8999999888777777655 678888776644322 22223333 37888886432 22
Q ss_pred ---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 375 ---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 375 ---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
...++||+|+. .||.+. ......++.++||+||.++++.-.++.
T Consensus 142 ~~~~~~~tfDfaFv----DadK~n--Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 142 LADGESGTFDFAFV----DADKDN--YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HhcCCCCceeEEEE----ccchHH--HHHHHHHHHhhcccccEEEEeccccCC
Confidence 35689999984 455555 347899999999999999998744433
No 210
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.10 E-value=0.0037 Score=65.89 Aligned_cols=106 Identities=19% Similarity=0.037 Sum_probs=78.3
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC----ccEEEccCCCCc----cCCCccc
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL----IPLYVTLNQRLP----FFDNTMD 381 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~----i~~~~~d~~~Lp----f~d~sFD 381 (467)
.|+ +|||+=|=||.|+...+..|. +|++ +|.|..+++.+.++ +. +.++++|+..+- -...+||
T Consensus 217 ~Gk--rvLNlFsYTGgfSv~Aa~gGA~~vt~--VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGK--RVLNLFSYTGGFSVHAALGGASEVTS--VDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCC--eEEEecccCcHHHHHHHhcCCCceEE--EeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 355 899999999999999999998 8999 78888888877653 32 568888865432 2345899
Q ss_pred eEEeccccc------cccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 382 LIHTTGFMD------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 382 lVis~~~L~------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+|+..-.-. -|.-..+...++....++|+|||.+++++-...-
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 999753211 1222334567899999999999999997755443
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.08 E-value=0.0037 Score=62.82 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=71.3
Q ss_pred CceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc--CCcc-----EEEcc-CCCCccCCCccceEEec
Q 012235 318 TRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR--GLIP-----LYVTL-NQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r--g~i~-----~~~~d-~~~Lpf~d~sFDlVis~ 386 (467)
.++|||+|+|+|..+..+.+. -.+++. +|.|+.|++.+..- .... +.... ....++ ...|+|+++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~--vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTC--VDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeee--ecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEe
Confidence 348999999999766555543 234555 88889888766431 1111 11101 111222 233999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH--HHHHHHHHHcCc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL--DDYMYMFLQFRY 439 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~--~~~~~~i~~~Gf 439 (467)
++|....+ .....++..+.+.+.+ .|+|.++..+.... ....+.+...|+
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGA 161 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCC
Confidence 99987777 5667888888887766 88888776654322 255555555444
No 212
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.06 E-value=0.002 Score=64.45 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-------CccEEEccCCCCccCCCccc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-------LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-------~i~~~~~d~~~Lpf~d~sFD 381 (467)
+-.++++++ .||++|.|||.++..|.+.|.+|+++++| +.|+....+|. ...++++|....++ ..||
T Consensus 52 ~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~D--prmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd 125 (315)
T KOG0820|consen 52 EKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEID--PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFD 125 (315)
T ss_pred hccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecC--cHHHHHHHHHhcCCCccceeeEEecccccCCC--cccc
Confidence 334577777 99999999999999999999999995555 67777777763 25688888776653 4699
Q ss_pred eEEecccc
Q 012235 382 LIHTTGFM 389 (467)
Q Consensus 382 lVis~~~L 389 (467)
.++++...
T Consensus 126 ~cVsNlPy 133 (315)
T KOG0820|consen 126 GCVSNLPY 133 (315)
T ss_pred eeeccCCc
Confidence 99997554
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.03 E-value=0.0031 Score=63.79 Aligned_cols=127 Identities=19% Similarity=0.169 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhh---------CCCEEEEEecCCCHHHHHHHH----HcCC----ccEEEc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMRE---------QNVTIVSTALNLGAPFNEMIA----LRGL----IPLYVT 368 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~---------~g~~V~gvdiDiS~~~l~~a~----~rg~----i~~~~~ 368 (467)
++..++...++. +|+|-+||+|.|...+.+ ....++|+|+| +.+...+. ..+. ..+..+
T Consensus 37 l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 37 LMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhcccccccccccc
Confidence 344555555554 899999999999887766 35678886655 44443332 1221 246677
Q ss_pred cCCCCccC--CCccceEEeccccccc--cch----------------hhHHHHHHHHHhccCCCcEEEEEeccc--CCCC
Q 012235 369 LNQRLPFF--DNTMDLIHTTGFMDGW--LDM----------------LLLDFILFDWDRILRPGGLLWIDRFFC--NKKD 426 (467)
Q Consensus 369 d~~~Lpf~--d~sFDlVis~~~L~h~--~~~----------------~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~ 426 (467)
|....+.. .+.||+|+++..+... ... ..--.++..+.+.|++||.+.+..+.. ....
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~ 192 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSS 192 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGST
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccc
Confidence 75544433 4789999998665322 110 001247788999999999987765432 1222
Q ss_pred H-HHHHHHHHH
Q 012235 427 L-DDYMYMFLQ 436 (467)
Q Consensus 427 ~-~~~~~~i~~ 436 (467)
. ..+++.+-+
T Consensus 193 ~~~~iR~~ll~ 203 (311)
T PF02384_consen 193 SEKKIRKYLLE 203 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 2 255554443
No 214
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.02 E-value=0.00045 Score=66.48 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=86.1
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
..++||+|+|.|..+..++..-..|++ .+.|..|.....+.+- .++.. . ...-.+-.||+|.|...+...-++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyA--TElS~tMr~rL~kk~y-nVl~~-~-ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYA--TELSWTMRDRLKKKNY-NVLTE-I-EWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHH--HHhhHHHHHHHhhcCC-ceeee-h-hhhhcCceeehHHHHHHHHhhcCh--
Confidence 358999999999999999877556666 6677888888877652 11111 1 111124469999999888654444
Q ss_pred HHHHHHHHHhccCC-CcEEEEEe------ccc-------CCC-------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 398 LDFILFDWDRILRP-GGLLWIDR------FFC-------NKK-------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 398 l~~~L~el~RvLKP-GG~LiI~~------~~~-------~~~-------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
-.++.++..+|+| +|.++++- +.. .+. +...+.+.++..||..-.|.-.+.
T Consensus 186 -~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPY 263 (288)
T KOG3987|consen 186 -FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPY 263 (288)
T ss_pred -HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCCe
Confidence 4799999999999 89987742 111 000 123677889999998888876554
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.99 E-value=0.0073 Score=59.78 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=83.7
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-cCCC-ccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP-FFDN-TMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp-f~d~-sFDlV 383 (467)
.++||=||.|.|..+..+.+.. ..++.+ |+.+..++.+++- ..+.++.+|+..+- -..+ .||+|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~V--EiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVV--EIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEE--ES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEE--ecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4589999999999999999874 567774 4556666666431 24778888865542 2234 89999
Q ss_pred Eeccccccccc-hhhHHHHHHHHHhccCCCcEEEEEe--cccCCCCHHHHHHHHHHcCceeeEEE--EccCCCCceEEEE
Q 012235 384 HTTGFMDGWLD-MLLLDFILFDWDRILRPGGLLWIDR--FFCNKKDLDDYMYMFLQFRYKKHKWA--ISPKSKDEVYLSA 458 (467)
Q Consensus 384 is~~~L~h~~~-~~~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~~~~~~i~~~Gf~~l~W~--~~~k~~devyl~a 458 (467)
+....-..... ..-...+++.+.++|+|||.+++.. +.........+.+.++.. |..+..- ..+--...+|.-+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~vP~~~~~~~~~~ 233 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV-FPQVKPYTAYVPSYGSGWWSFA 233 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT-SSEEEEEEEECTTSCSSEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh-CCceEEEEEEcCeecccceeEE
Confidence 97543211110 0112479999999999999998854 222222223455566666 4433332 2222233345445
Q ss_pred Eeec
Q 012235 459 LLEK 462 (467)
Q Consensus 459 vlqK 462 (467)
+..|
T Consensus 234 ~~s~ 237 (246)
T PF01564_consen 234 SASK 237 (246)
T ss_dssp EEES
T ss_pred EEeC
Confidence 5554
No 216
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0035 Score=67.10 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=80.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
++|-+|||.-.+...+.+.|. .++. +|.|...++....++ ...+...|...+.|++.+||+|+.-..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~--iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITN--IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCcee--ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 789999999999999998875 4667 777777777665543 36788899999999999999999988887654
Q ss_pred chh-------hHHHHHHHHHhccCCCcEEEEEecc
Q 012235 394 DML-------LLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 394 ~~~-------~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.++ .....+.++.|+|+|||.++..++.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 332 2345688999999999999887773
No 217
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.92 E-value=0.002 Score=65.53 Aligned_cols=79 Identities=22% Similarity=0.172 Sum_probs=58.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCc--cCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLP--FFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lp--f~d 377 (467)
+.+.+.+.++. ++||.+||.|+.+..+++.. ..|+| +|.++.+++.+.++ +.+.+++++...+. ..+
T Consensus 11 vl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vig--iD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 11 VVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIA--IDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEE--EcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 34455566666 89999999999999999883 57888 67778888887654 24788888877654 112
Q ss_pred C--ccceEEecccc
Q 012235 378 N--TMDLIHTTGFM 389 (467)
Q Consensus 378 ~--sFDlVis~~~L 389 (467)
+ ++|.|++....
T Consensus 87 ~~~~vDgIl~DLGv 100 (296)
T PRK00050 87 GLGKVDGILLDLGV 100 (296)
T ss_pred CCCccCEEEECCCc
Confidence 2 79999976443
No 218
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0073 Score=57.82 Aligned_cols=128 Identities=12% Similarity=0.019 Sum_probs=76.7
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC-CC--EEEEEecCCC--------HHHHHHHHHc--CCccEEEccCCCCc
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ-NV--TIVSTALNLG--------APFNEMIALR--GLIPLYVTLNQRLP 374 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~--~V~gvdiDiS--------~~~l~~a~~r--g~i~~~~~d~~~Lp 374 (467)
..+..++++. +|+|+=.|.|+|++-++.. |. .|+++..+.. +.+...+++. .++..+-.....++
T Consensus 41 L~FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 3456788888 9999999999999998876 22 5666644432 1111222211 11233333333333
Q ss_pred -------cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------CCHHHHHHHHH
Q 012235 375 -------FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------KDLDDYMYMFL 435 (467)
Q Consensus 375 -------f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------~~~~~~~~~i~ 435 (467)
.+..++|.++.+..+ | .....++..++++.|||||.+.+.+..... -+....+...+
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i-~---~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~ve 194 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNI-H---PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVE 194 (238)
T ss_pred CCCcccccccchhhhhhhcccc-C---cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHH
Confidence 123344444444444 3 233578999999999999999886543211 13457778888
Q ss_pred HcCcee
Q 012235 436 QFRYKK 441 (467)
Q Consensus 436 ~~Gf~~ 441 (467)
..||+.
T Consensus 195 aaGFkl 200 (238)
T COG4798 195 AAGFKL 200 (238)
T ss_pred hhccee
Confidence 889854
No 219
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.016 Score=57.08 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred cccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHH-HHHHcCCcc-EE
Q 012235 290 KEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNE-MIALRGLIP-LY 366 (467)
Q Consensus 290 ~e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~-~a~~rg~i~-~~ 366 (467)
.+.+.|..+.+......+ +...+...+ +++||+|+-||.|+..+.++| ..|+++|+-.. .+. ..+....+. +.
T Consensus 54 ~~~~~yVSRG~~KL~~al-e~F~l~~k~-kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~--Ql~~kLR~d~rV~~~E 129 (245)
T COG1189 54 GEEQPYVSRGGLKLEKAL-EEFELDVKG-KVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG--QLHWKLRNDPRVIVLE 129 (245)
T ss_pred ccCcCccccHHHHHHHHH-HhcCcCCCC-CEEEEecCCCccHHHHHHHcCCcEEEEEEccCC--ccCHhHhcCCcEEEEe
Confidence 366788885444333333 334444332 489999999999999999996 46888555432 221 122222222 22
Q ss_pred EccCCCCc--cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 367 VTLNQRLP--FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 367 ~~d~~~Lp--f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..++..+. ...+..|++++.-++. .+..+|..+..+++|+|.++.-
T Consensus 130 ~tN~r~l~~~~~~~~~d~~v~DvSFI------SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 130 RTNVRYLTPEDFTEKPDLIVIDVSFI------SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred cCChhhCCHHHcccCCCeEEEEeehh------hHHHHHHHHHHhcCCCceEEEE
Confidence 33444432 1123678999987773 2467899999999999987763
No 220
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.82 E-value=0.0059 Score=61.87 Aligned_cols=125 Identities=15% Similarity=-0.005 Sum_probs=76.8
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC-c--cCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL-P--FFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L-p--f~d~sFDlVis~~ 387 (467)
+|||+=|=||.|+...+..|. .|++ +|.|+.+++.+.++ + .+.++.+|+..+ . -..+.||+|++.-
T Consensus 126 rvLnlFsYTGgfsv~Aa~gGA~~v~~--VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 126 RVLNLFSYTGGFSVAAAAGGAKEVVS--VDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp EEEEET-TTTHHHHHHHHTTESEEEE--EES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred ceEEecCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 899999999999999888875 5777 78889888877653 3 256888886542 1 1246899999853
Q ss_pred cc---ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC--ceeeEEEEc
Q 012235 388 FM---DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR--YKKHKWAIS 447 (467)
Q Consensus 388 ~L---~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G--f~~l~W~~~ 447 (467)
.- ..+.-..++..++..+.++|+|||.+++.+-.. .-+.+.+.+.+.+.+ ++.+.+...
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~-~i~~~~l~~~~~~~a~~~~~~~~~~~ 267 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH-HISPDFLLEAVAEAAREVEFIERLGQ 267 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T-TS-HHHHHHHHHHHHHHCEEEEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc-ccCHHHHHHHHHHhCccceEeeeecc
Confidence 21 122223345678999999999999987755432 223334555444331 344444433
No 221
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0092 Score=60.39 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=69.3
Q ss_pred CCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-cCCCccce
Q 012235 316 GETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP-FFDNTMDL 382 (467)
Q Consensus 316 g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp-f~d~sFDl 382 (467)
+..++||-||.|.|..++.+.+.. ..++. +++.+..++.+++. ..+.++.+|...+- -..++||+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~--VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITM--VEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEE--EEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 334699999999999999999985 45666 55556777777653 12567777755442 22348999
Q ss_pred EEeccccccccc--hhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLD--MLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~--~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+....= ...+ .---..+++.+.|.|+++|.++..
T Consensus 153 Ii~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9986543 1111 000147999999999999999886
No 222
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.69 E-value=0.022 Score=55.45 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=77.3
Q ss_pred ceEEEECCCccHHHHHHh--hCCCEEEEEecCCC-HHHHHHHHHc-C--CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 319 RIGLDFGVGTGTFAARMR--EQNVTIVSTALNLG-APFNEMIALR-G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La--~~g~~V~gvdiDiS-~~~l~~a~~r-g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.+++|||+|.|.-+..|+ ....+++-+|...- ..+++.+... + ++.++++-++.+.-...-||+|+|..+-.
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~-- 146 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS-- 146 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc--
Confidence 489999999997777665 33556776433321 1345555432 3 37788888887753222299999977652
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
+..+..=....+|+||.++..-+....+...+........|+...+-
T Consensus 147 -----L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 147 -----LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred -----hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 34566677889999999876555555555556666677776655443
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.60 E-value=0.0089 Score=59.47 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC---Cc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD---NT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d---~s 379 (467)
|.+.+.+.++. .|||||+|+|.++..|.+.+..+++++.| +.+.+...++ +.+.++.+|+..+..+. +.
T Consensus 22 Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 22 IVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 34445555555 89999999999999999999899995555 6777777663 45889999998887655 45
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCC---CcEEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRP---GGLLWI 417 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKP---GG~LiI 417 (467)
-..|+++... +.. ..++..+...-+. ...+++
T Consensus 98 ~~~vv~NlPy-~is-----~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 98 PLLVVGNLPY-NIS-----SPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp EEEEEEEETG-TGH-----HHHHHHHHHHGGGCEEEEEEEE
T ss_pred ceEEEEEecc-cch-----HHHHHHHhhcccccccceEEEE
Confidence 6678877654 333 2355555553333 344444
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.56 E-value=0.0057 Score=59.08 Aligned_cols=110 Identities=19% Similarity=0.286 Sum_probs=56.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCHHHHHHH-------HH----cC----CccEEEcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGAPFNEMI-------AL----RG----LIPLYVTL 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a-------~~----rg----~i~~~~~d 369 (467)
+.+.+++.+++ +.+|+|||.|......+-. ++. ++|+++. +...+.+ .+ .+ .+.+..+|
T Consensus 34 il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~--~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 34 ILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEIL--PELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-S--HHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEec--hHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 33445666776 8999999999876655533 554 8886554 3222222 11 12 25566777
Q ss_pred CCCCccCC---CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 370 NQRLPFFD---NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 370 ~~~Lpf~d---~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
..+.++.. ..-|+|+++... +.++ +...+.++..-||+|-+++-...+++.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~--l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPD--LNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HH--HHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHH--HHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 65443211 346899998764 2222 456678888899999887665555543
No 225
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.49 E-value=0.025 Score=58.23 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=63.7
Q ss_pred eEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C--CccE--EEccCCC----Ccc--CCCccc
Q 012235 320 IGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G--LIPL--YVTLNQR----LPF--FDNTMD 381 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g--~i~~--~~~d~~~----Lpf--~d~sFD 381 (467)
.++|+|||.|.=+..|.+. +..+.-+.+|+|..+++.+..+ . .+.+ +++|..+ ++- ......
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r 158 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPT 158 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCcc
Confidence 7999999999766655432 3233334489999888777542 1 1222 4555432 221 123456
Q ss_pred eEEecc-ccccccchhhHHHHHHHHHh-ccCCCcEEEEEe
Q 012235 382 LIHTTG-FMDGWLDMLLLDFILFDWDR-ILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~-~L~h~~~~~~l~~~L~el~R-vLKPGG~LiI~~ 419 (467)
+++... ++-++.+.+ ...+|.++.+ .|+|||.|+|..
T Consensus 159 ~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 159 TILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence 777654 565555554 5689999999 999999999853
No 226
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.42 E-value=0.0072 Score=57.24 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=62.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-Cc---cCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-LP---FFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-Lp---f~d~sFDlVis~~ 387 (467)
++||+-||+|.++...+.+|. .|+. +|.+..+.+.++++ + .+.++..|... ++ .....||+|+..-
T Consensus 45 ~vLDLFaGSGalGlEALSRGA~~v~f--VE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 45 RVLDLFAGSGALGLEALSRGAKSVVF--VEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp EEEETT-TTSHHHHHHHHTT-SEEEE--EES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred eEEEcCCccCccHHHHHhcCCCeEEE--EECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 899999999999999999985 6777 55666665555432 2 24566666432 22 2468999999987
Q ss_pred ccccccchhhHHHHHHHHH--hccCCCcEEEEEec
Q 012235 388 FMDGWLDMLLLDFILFDWD--RILRPGGLLWIDRF 420 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~ 420 (467)
... .... ...++..+. .+|+++|.+++-+.
T Consensus 123 PY~-~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 PYA-KGLY--YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp STT-SCHH--HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Ccc-cchH--HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 662 2221 246677766 89999999888553
No 227
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.41 E-value=0.1 Score=50.42 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=80.2
Q ss_pred EEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCC-ccceEEeccccccc
Q 012235 321 GLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDN-TMDLIHTTGFMDGW 392 (467)
Q Consensus 321 VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~-sFDlVis~~~L~h~ 392 (467)
|.||||-.|+++..|.++|..-.++..|+++.-++.|.+ .+ .+.+..+|... ++.++ ..|.|+....=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH--
Confidence 689999999999999999886666667777766665543 34 37788888543 22333 378877655431
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEee
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLE 461 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlq 461 (467)
.....++.+....++....|++. +......+++++...||..+.=..... ++..|-..+..
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILq----P~~~~~~LR~~L~~~gf~I~~E~lv~e-~~~~YeIi~~~ 138 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQ----PNTHAYELRRWLYENGFEIIDEDLVEE-NGRFYEIIVAE 138 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEE----ESS-HHHHHHHHHHTTEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEe----CCCChHHHHHHHHHCCCEEEEeEEEeE-CCEEEEEEEEE
Confidence 11356777777777777778773 345556899999999998775544432 34455544443
No 228
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.02 Score=61.29 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=78.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccC---CCc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFF---DNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~---d~s 379 (467)
+.++..+++ ++||+=||.|+|+..|+++...|+| +++++++++.|.+ ++ ++.+..++++++... ...
T Consensus 287 ~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~g--vEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 287 EWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHG--VEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEE--EecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 344444555 8999999999999999999999999 6666776666543 23 267888888877543 357
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+|.|+..-.-. -.+. .++..+.+ ++|...+++ .|+......=...+...||+
T Consensus 363 ~d~VvvDPPR~-G~~~----~~lk~l~~-~~p~~IvYV---SCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 363 PDVVVVDPPRA-GADR----EVLKQLAK-LKPKRIVYV---SCNPATLARDLAILASTGYE 414 (432)
T ss_pred CCEEEECCCCC-CCCH----HHHHHHHh-cCCCcEEEE---eCCHHHHHHHHHHHHhCCeE
Confidence 89999865441 1121 34555444 567777777 45554444334455666664
No 229
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.035 Score=55.70 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=82.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecC--CCHHHHHHHHHcC---CccEEEccCCCCcc--
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALN--LGAPFNEMIALRG---LIPLYVTLNQRLPF-- 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiD--iS~~~l~~a~~rg---~i~~~~~d~~~Lpf-- 375 (467)
+|..+|++.||. +|++-|.|+|.++.++++. + -.++.+++. ....+++..++.+ ++.+.+-|....-|
T Consensus 96 ~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 577889999998 9999999999999999876 3 345665543 1223344444444 36777777655444
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
.+..+|.|+....- + -.++--++.+||.+|. .+..|..--+..+.-.+.+..+||..+..
T Consensus 174 ks~~aDaVFLDlPa-----P---w~AiPha~~~lk~~g~-r~csFSPCIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 174 KSLKADAVFLDLPA-----P---WEAIPHAAKILKDEGG-RLCSFSPCIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred cccccceEEEcCCC-----h---hhhhhhhHHHhhhcCc-eEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence 35789998865543 2 2456666678888874 22223222234456667788888866544
No 230
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.36 E-value=0.036 Score=57.67 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=66.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCc----------------cCC
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLP----------------FFD 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lp----------------f~d 377 (467)
.|||+-||.|+++..|++....|+| ++..+.+++.|.+ ++ ++.++.++++++. ...
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~g--vE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIG--VEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEE--EES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEE--eeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 6999999999999999999999999 5666777776653 33 3677776654331 112
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCce
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEV 454 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~dev 454 (467)
..+|+|+..-.-... +. .++..+.+ +.=.+++ .|+..... ++.. +.+ ||+..+.....- .-..+
T Consensus 277 ~~~d~vilDPPR~G~-~~----~~~~~~~~---~~~ivYv---SCnP~tlaRDl~~-L~~-~y~~~~v~~~DmFP~T~Hv 343 (352)
T PF05958_consen 277 FKFDAVILDPPRAGL-DE----KVIELIKK---LKRIVYV---SCNPATLARDLKI-LKE-GYKLEKVQPVDMFPQTHHV 343 (352)
T ss_dssp TTESEEEE---TT-S-CH----HHHHHHHH---SSEEEEE---ES-HHHHHHHHHH-HHC-CEEEEEEEEE-SSTTSS--
T ss_pred cCCCEEEEcCCCCCc-hH----HHHHHHhc---CCeEEEE---ECCHHHHHHHHHH-Hhh-cCEEEEEEEeecCCCCCcE
Confidence 367888876544221 12 33443333 3334444 33333333 3333 333 777655443332 22233
Q ss_pred EEEEEeec
Q 012235 455 YLSALLEK 462 (467)
Q Consensus 455 yl~avlqK 462 (467)
=..++|+|
T Consensus 344 E~v~lL~r 351 (352)
T PF05958_consen 344 ETVALLER 351 (352)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 34556665
No 231
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.0073 Score=55.37 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=53.1
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.++|+|||.|.+....+-. .-.|+| +|+.+.+++.+..+. .+.+++++..++.+..+.||.++.+-.+
T Consensus 51 kl~DLgcgcGmLs~a~sm~~~e~vlG--fDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 51 KLKDLGCGCGMLSIAFSMPKNESVLG--FDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred chhhhcCchhhhHHHhhcCCCceEEe--eecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 7899999999988655544 456788 555677888776542 2688999998888888999999998766
No 232
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.29 E-value=0.023 Score=64.38 Aligned_cols=98 Identities=14% Similarity=-0.016 Sum_probs=64.3
Q ss_pred eEEEECCCccHHHHHHhhC--------------------------------------------CCEEEEEecCCCHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQ--------------------------------------------NVTIVSTALNLGAPFNE 355 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--------------------------------------------g~~V~gvdiDiS~~~l~ 355 (467)
.++|-+||+|++....+.. ...++| +|+++.+++
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G--~Did~~av~ 270 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYG--SDIDPRVIQ 270 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEE--EECCHHHHH
Confidence 8999999999998776541 124666 666677777
Q ss_pred HHHHc----CC---ccEEEccCCCCccC--CCccceEEecccccc-ccchhhHHHHHHHHHhcc---CCCcEEEEEe
Q 012235 356 MIALR----GL---IPLYVTLNQRLPFF--DNTMDLIHTTGFMDG-WLDMLLLDFILFDWDRIL---RPGGLLWIDR 419 (467)
Q Consensus 356 ~a~~r----g~---i~~~~~d~~~Lpf~--d~sFDlVis~~~L~h-~~~~~~l~~~L~el~RvL---KPGG~LiI~~ 419 (467)
.+..+ |. +.+.++|+.+++.+ .++||+|+++...-. +.....+..+..++.+.| .+|+.+++.+
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 76543 33 67889998887654 357999999966522 222222344444444444 4899887755
No 233
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.0019 Score=59.66 Aligned_cols=57 Identities=26% Similarity=0.249 Sum_probs=47.2
Q ss_pred ccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 363 IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 363 i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+.++.......+|.+++.|+|.+.++++|+.-.+. ..++++.+|+|||||+|-++.+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEcC
Confidence 34444445667899999999999999999988764 6899999999999999988643
No 234
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.061 Score=51.29 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=63.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCC-ccCCC--ccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRL-PFFDN--TMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~L-pf~d~--sFDlVis~~~ 388 (467)
++||+=+|+|.++...+.+|. .++. +|.+..+...+.++ +...++..|+..+ +-... .||+|+..-.
T Consensus 46 ~~LDlFAGSGaLGlEAlSRGA~~~~~--vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRGAARVVF--VEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred EEEEecCCccHhHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 899999999999999999975 4666 55556665555432 3356777776533 11222 5999999887
Q ss_pred cccccch-hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDM-LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+ +..-. ........+-..+|+|+|.+++-.
T Consensus 124 y-~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 124 Y-AKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred C-ccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 7 32111 011222233568899999988843
No 235
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.82 E-value=0.0041 Score=52.68 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=39.0
Q ss_pred EEECCCccHHHHHHhhC---C--CEEEEEecCCC-HHHHHHHHH---cCCccEEEccCCCC-c-cCCCccceEEeccccc
Q 012235 322 LDFGVGTGTFAARMREQ---N--VTIVSTALNLG-APFNEMIAL---RGLIPLYVTLNQRL-P-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 322 LDIGCGtG~~a~~La~~---g--~~V~gvdiDiS-~~~l~~a~~---rg~i~~~~~d~~~L-p-f~d~sFDlVis~~~L~ 390 (467)
||+|+..|..+..+++. + .+++++|.... +...+.+++ ...+.++.++.... + +..++||+|+....-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 68999999888887764 2 36788666652 122333332 23477888876433 2 335799999987642
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
-.+ .....+..+.+.|+|||.+++.+
T Consensus 80 -~~~--~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 -SYE--AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HH--HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CHH--HHHHHHHHHHHHcCCCeEEEEeC
Confidence 222 23578889999999999998865
No 236
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.76 E-value=0.039 Score=60.27 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=42.7
Q ss_pred ceEEEECCCccHHHHHHhhCC----------CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-----ccCC
Q 012235 319 RIGLDFGVGTGTFAARMREQN----------VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-----PFFD 377 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g----------~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-----pf~d 377 (467)
.+|||.|||+|.+...++++. ..+++ .|+++.++..+..+ + .+.+...+.... .-..
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g--~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYF--ADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeee--echhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 379999999999998887641 23455 66666666655432 2 133343332111 1123
Q ss_pred CccceEEeccccc
Q 012235 378 NTMDLIHTTGFMD 390 (467)
Q Consensus 378 ~sFDlVis~~~L~ 390 (467)
+.||+|+++-...
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999986553
No 237
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.66 E-value=0.028 Score=59.06 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=65.7
Q ss_pred eEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCcc-CCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPF-FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf-~d~sFDlVis~~~L 389 (467)
+|||+.||+|..+.+++.+ | ..|++ .|+++.+.+.+.++ +. +.++.+|+..+-. ..+.||+|...- +
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~--nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFA--NDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 7999999999999999987 4 46777 66677776666442 22 5577777665421 235799998865 3
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
. .+ ..++..+.+.+++||.+.++
T Consensus 124 -G--s~---~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -G--TP---APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C--Cc---HHHHHHHHHhcccCCEEEEE
Confidence 2 21 36889999999999999996
No 238
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.65 E-value=0.013 Score=54.65 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=42.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc--cCCCc-cceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP--FFDNT-MDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp--f~d~s-FDlVis~ 386 (467)
+|+|+.||.|..+..+++....|+++|+ ++..++.++.+ | .+.++++|...+. +..+. +|+|+.+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidi--d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDI--DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7999999999999999999989999554 45555555432 3 4889999866542 22222 8999975
No 239
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.61 E-value=0.067 Score=55.75 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=87.6
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------------CCccEEEccCCCCc-cCCCccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------------GLIPLYVTLNQRLP-FFDNTMD 381 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------------g~i~~~~~d~~~Lp-f~d~sFD 381 (467)
.++||-+|.|.|.-++.+.+.. .+++- +|+.+.|++.+... ..+.++..|+..+- -..+.||
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~l--VdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITL--VDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEE--EecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 5689999999999999999873 45666 45557888877521 12556677765542 3456899
Q ss_pred eEEecccccc--ccchhhHHHHHHHHHhccCCCcEEEEE--ecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCce
Q 012235 382 LIHTTGFMDG--WLDMLLLDFILFDWDRILRPGGLLWID--RFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEV 454 (467)
Q Consensus 382 lVis~~~L~h--~~~~~~l~~~L~el~RvLKPGG~LiI~--~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~dev 454 (467)
.|+....=-. -...-....+..-+.|.|+++|.+++. +++...+-.-.+...+++.||.....++--.+-.||
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeW 444 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEW 444 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccccc
Confidence 9996432100 000111235777889999999999994 233333222256678899999887776655555555
No 240
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.54 E-value=0.034 Score=56.21 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCC-c-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRL-P- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~L-p- 374 (467)
.....+...++. .|||+.+|.|+=+..+++. ...+++ .|++..-+..+. +-|. +.....|...+ +
T Consensus 76 l~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A--~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 76 LVALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVA--NDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEE--EESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred cccccccccccc--cccccccCCCCceeeeeecccchhHHHH--hccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 344556677777 8999999999888888876 357777 555555444443 3343 44444565544 2
Q ss_pred cCCCccceEEec----c--ccccccc------h-------hhHHHHHHHHHhcc----CCCcEEEEEecccCCCCHH-HH
Q 012235 375 FFDNTMDLIHTT----G--FMDGWLD------M-------LLLDFILFDWDRIL----RPGGLLWIDRFFCNKKDLD-DY 430 (467)
Q Consensus 375 f~d~sFDlVis~----~--~L~h~~~------~-------~~l~~~L~el~RvL----KPGG~LiI~~~~~~~~~~~-~~ 430 (467)
.....||.|+.. . ++..-++ . ..-..+|..+.+.+ ||||+++.++-....++.+ ..
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV 231 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVV 231 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHH
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHH
Confidence 233469999962 1 2211100 0 11246888999999 9999999988766554444 45
Q ss_pred HHHHHHc
Q 012235 431 MYMFLQF 437 (467)
Q Consensus 431 ~~~i~~~ 437 (467)
...+++.
T Consensus 232 ~~fl~~~ 238 (283)
T PF01189_consen 232 EKFLKRH 238 (283)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 5555554
No 241
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.39 E-value=0.076 Score=51.78 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=65.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----CccEEEc-cCCCCc-cCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----LIPLYVT-LNQRLP-FFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~-d~~~Lp-f~d~sFDlVis~~~L~h~ 392 (467)
+||.||-|-|.....+.++...-.-+ ++..+...+..+..+ ++-.+.+ +-..++ ++++.||.|+-..--.++
T Consensus 104 rvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~y 182 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELY 182 (271)
T ss_pred eEEEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhhHH
Confidence 89999999999999888874322211 344455566665543 2333333 333333 568889999975443343
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
.+ +..+.+.+.|+|||+|.|-+....+..
T Consensus 183 Ed---l~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 183 ED---LRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred HH---HHHHHHHHhhhcCCCceEEEecCcccc
Confidence 33 467888999999999998775554443
No 242
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.25 E-value=0.097 Score=52.57 Aligned_cols=106 Identities=13% Similarity=0.005 Sum_probs=58.2
Q ss_pred CCceEEEECCCcc--HHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCCc--c----CCCc
Q 012235 317 ETRIGLDFGVGTG--TFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRLP--F----FDNT 379 (467)
Q Consensus 317 ~~r~VLDIGCGtG--~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~Lp--f----~d~s 379 (467)
+++..||||||-= .....++++ ...|+-+|.| +-.+..++ .... ..++.+|..+.. + -.+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D--Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND--PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS--HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC--chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 4778999999943 345555554 6788886666 33333222 2222 668888876532 1 1123
Q ss_pred cc-----eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 380 MD-----LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 380 FD-----lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+| .|+...+++|..+.+....++..+...|.||.+|+|++.....
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 44 4666777855666577899999999999999999999887643
No 243
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.17 E-value=0.2 Score=49.79 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=63.1
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc--------C-CccE-EEccCCCCc--cCCCc-cceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR--------G-LIPL-YVTLNQRLP--FFDNT-MDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r--------g-~i~~-~~~d~~~Lp--f~d~s-FDlVi 384 (467)
.+||++|+|+|..+..++.. +..|.-+|.-.....++..... | .+.+ ...|....+ +.... ||+|+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 47999999999888777764 6777775555444444444322 1 1111 112322222 22233 99999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
++.++++-... +.++.-+...|-.+|.+++.......
T Consensus 168 asDvvy~~~~~---e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 168 ASDVVYEEESF---EGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EeeeeecCCcc---hhHHHHHHHHHhcCCeEEEEEecccc
Confidence 99998644444 56777788888888866665554443
No 244
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.98 E-value=0.058 Score=48.53 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.5
Q ss_pred CceEEEECCCccHHHHHHhh-----C-CCEEEEEecCCCHHHHHHHH
Q 012235 318 TRIGLDFGVGTGTFAARMRE-----Q-NVTIVSTALNLGAPFNEMIA 358 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~-----~-g~~V~gvdiDiS~~~l~~a~ 358 (467)
...|+|+|||.|+++..|+. . +..|+++|.+ +...+.+.
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~--~~~~~~a~ 70 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN--ESLVESAQ 70 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC--cHHHHHHH
Confidence 34899999999999999998 3 7888885554 44444443
No 245
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.95 E-value=0.08 Score=50.89 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=63.5
Q ss_pred hHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHH----HHcCC-ccEEEccCCCCccC
Q 012235 303 VDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMI----ALRGL-IPLYVTLNQRLPFF 376 (467)
Q Consensus 303 ~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a----~~rg~-i~~~~~d~~~Lpf~ 376 (467)
...+++..=+.-.+. +|||+|+|+|..+...+..|. .|++.|+| +...+.+ +.++. +.+...|.-. .
T Consensus 67 lAR~i~~~PetVrgk--rVLd~gagsgLvaIAaa~aGA~~v~a~d~~--P~~~~ai~lNa~angv~i~~~~~d~~g---~ 139 (218)
T COG3897 67 LARYIDDHPETVRGK--RVLDLGAGSGLVAIAAARAGAAEVVAADID--PWLEQAIRLNAAANGVSILFTHADLIG---S 139 (218)
T ss_pred HHHHHhcCccccccc--eeeecccccChHHHHHHHhhhHHHHhcCCC--hHHHHHhhcchhhccceeEEeeccccC---C
Confidence 333444332333344 899999999999888887764 46665555 3333322 22332 4555555443 5
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcE-EEEEeccc
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGL-LWIDRFFC 422 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~-LiI~~~~~ 422 (467)
+..||+|+...+++.-... ..++. ..+.|+..|. +++.++..
T Consensus 140 ~~~~Dl~LagDlfy~~~~a---~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 140 PPAFDLLLAGDLFYNHTEA---DRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred CcceeEEEeeceecCchHH---HHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 7889999999887433222 35556 5555555554 44445443
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.86 E-value=0.19 Score=45.87 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=69.0
Q ss_pred EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc--CCCccceEEecccccc------ccchhhHHHHHHHH
Q 012235 341 TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF--FDNTMDLIHTTGFMDG------WLDMLLLDFILFDW 405 (467)
Q Consensus 341 ~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf--~d~sFDlVis~~~L~h------~~~~~~l~~~L~el 405 (467)
+|++ .|+-+.+++..+++ + .+.+++.+-+++.- +++.+|+|+.|...-. ....+..-.++..+
T Consensus 1 kVya--FDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYA--FDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEE--EES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEE--EECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 3666 66777777766543 2 37788877666652 2358999998865422 12233345789999
Q ss_pred HhccCCCcEEEEEecccCCCCH---HHHHHHHHH---cCceeeEEEEccCCCCceEEEEEeec
Q 012235 406 DRILRPGGLLWIDRFFCNKKDL---DDYMYMFLQ---FRYKKHKWAISPKSKDEVYLSALLEK 462 (467)
Q Consensus 406 ~RvLKPGG~LiI~~~~~~~~~~---~~~~~~i~~---~Gf~~l~W~~~~k~~devyl~avlqK 462 (467)
.++|+|||.+.++.+..+.... +.+.+++.. -.|..+++......+..-++ .+.||
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l-~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLL-VIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EE-EEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEE-EEEEC
Confidence 9999999999999988776532 244444444 35677777776664443333 33444
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.049 Score=50.88 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=71.7
Q ss_pred ceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHH---HHcCC---cc-E--EE--ccCCCCccCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMI---ALRGL---IP-L--YV--TLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a---~~rg~---i~-~--~~--~d~~~Lpf~d~sFDlVi 384 (467)
+.||++|.|.-.++..|... ...|.-+ |-.+..++.. ..++. .. . +. -+........++||+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~lt--dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLT--DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEe--cCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 47999999966555555433 2334442 3334444433 32321 11 1 10 01222234457999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|..++ .+... .+.++.-+.+.|+|.|..++..+-. .+..+.+.+.+...||...
T Consensus 109 aADCl-FfdE~--h~sLvdtIk~lL~p~g~Al~fsPRR-g~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 109 AADCL-FFDEH--HESLVDTIKSLLRPSGRALLFSPRR-GQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred eccch-hHHHH--HHHHHHHHHHHhCcccceeEecCcc-cchHHHHHHHHHhceeEEE
Confidence 99998 44443 3678999999999999977754432 3456688888888887543
No 248
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.56 E-value=0.42 Score=49.54 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhC------------C------CEEEEEecCCCHHHHHHH---------
Q 012235 306 LISDILA-IKPGETRIGLDFGVGTGTFAARMREQ------------N------VTIVSTALNLGAPFNEMI--------- 357 (467)
Q Consensus 306 ~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~------------g------~~V~gvdiDiS~~~l~~a--------- 357 (467)
.|.+++. ....+.-+|+|+||..|..+..+.+. + ++|+--|+-... .....
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~ND-Fn~lF~~l~~~~~~ 82 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSND-FNTLFKSLPSFQQS 82 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS--HHHHHHCHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCcc-HHHHHHhChhhhhc
Confidence 4455543 22233347899999999877665432 2 355554443221 11111
Q ss_pred -HHcCC--ccEEEccCCCCccCCCccceEEeccccccccch-------------------------------------hh
Q 012235 358 -ALRGL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM-------------------------------------LL 397 (467)
Q Consensus 358 -~~rg~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~-------------------------------------~~ 397 (467)
...+. +..+-+....--||+++.|+++|+.++ ||... .+
T Consensus 83 ~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D 161 (334)
T PF03492_consen 83 LKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKD 161 (334)
T ss_dssp HHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHH
T ss_pred cCCCceEEEEecCchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHH
Confidence 11122 222233444444889999999999999 88521 11
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+..+|.-=.+-|+|||.+++..+....
T Consensus 162 ~~~FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 162 FSSFLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHHHHhhheeccCcEEEEEEeeccc
Confidence 223344445668899999998765544
No 249
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.47 E-value=0.21 Score=51.83 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=69.5
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEcc-CCCCccCCCccceEEecc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTL-NQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~~~Lpf~d~sFDlVis~~ 387 (467)
...++++ .|+=+|+| .|..+..+++ .|.+|++ +|.++...+.+.+-|.-.++.+. .....--.+.||+|+..-
T Consensus 162 ~~~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Via--~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 162 ANVKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVIA--ITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred cCCCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEE--EeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 4566777 77877776 4578888888 5999999 77788888888888764455433 222221123499998766
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
. . ..+....+.||+||.+++.-..
T Consensus 238 ~-~---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-P---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-h---------hhHHHHHHHHhcCCEEEEECCC
Confidence 5 2 5788899999999999997655
No 250
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.47 E-value=0.62 Score=43.49 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred ECCCccHHHHHHhhC---CCEEEEEecCCCHHHH----------HHHHHcCCccEEE-ccCCCCc----cCCCccceEEe
Q 012235 324 FGVGTGTFAARMREQ---NVTIVSTALNLGAPFN----------EMIALRGLIPLYV-TLNQRLP----FFDNTMDLIHT 385 (467)
Q Consensus 324 IGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l----------~~a~~rg~i~~~~-~d~~~Lp----f~d~sFDlVis 385 (467)
+|=|.=+|+..|++. +..++++..|...... +.+.+.| +.++. .|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 455555788888876 5578888787654332 2232334 33333 3666664 35688999999
Q ss_pred ccccccc----------cchhhHHHHHHHHHhccCCCcEEEEEecccCC-CCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMDGW----------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-KDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~h~----------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-~~~~~~~~~i~~~Gf~~l~ 443 (467)
++.-... .....+..++..+.++|+++|.+.|+...... +.+ .+.++.++.|+....
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W-~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSW-NIEELAAEAGLVLVR 149 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccc-cHHHHHHhcCCEEEE
Confidence 9875320 12234567899999999999999987655433 333 555777788876553
No 251
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.36 Score=50.76 Aligned_cols=109 Identities=17% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-----------------------------------------EEEEE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-----------------------------------------TIVST 345 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-----------------------------------------~V~gv 345 (467)
|..+.+..++. .++|==||+|+++...+..+. .++|
T Consensus 183 il~lagw~~~~--pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G- 259 (381)
T COG0116 183 ILLLAGWKPDE--PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG- 259 (381)
T ss_pred HHHHcCCCCCC--ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE-
Confidence 33344455554 789999999999988776543 2456
Q ss_pred ecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchh----hHHHHHHHHHhccCCCc
Q 012235 346 ALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDML----LLDFILFDWDRILRPGG 413 (467)
Q Consensus 346 diDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~----~l~~~L~el~RvLKPGG 413 (467)
.|+...+++.|+.+ | .|.|.++|+..++-+-+.+|+|+||-..- .+.+.. ....+...+.+.++--+
T Consensus 260 -~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 260 -SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred -ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 67778888877643 3 38899999999875548999999986541 222221 12345556677888777
Q ss_pred EEEEEe
Q 012235 414 LLWIDR 419 (467)
Q Consensus 414 ~LiI~~ 419 (467)
.+++++
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 887754
No 252
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.27 Score=51.31 Aligned_cols=135 Identities=18% Similarity=0.105 Sum_probs=79.9
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCC------EEEEEecCCCH-HHHHHHHHcCC---ccEEEccCCCCc-----
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNV------TIVSTALNLGA-PFNEMIALRGL---IPLYVTLNQRLP----- 374 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~------~V~gvdiDiS~-~~l~~a~~rg~---i~~~~~d~~~Lp----- 374 (467)
+|++++++ +|||+.+..|.=++.|.+..+ .|++-|+|.+. .++.....+-. +.+...++..+|
T Consensus 150 ~L~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 150 ALGVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred hcccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc
Confidence 35678888 999999999998888887643 56775555332 33333333311 222222333332
Q ss_pred ----cCCCccceEEec------ccccc--------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-H
Q 012235 375 ----FFDNTMDLIHTT------GFMDG--------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-D 429 (467)
Q Consensus 375 ----f~d~sFDlVis~------~~L~h--------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~ 429 (467)
.....||-|++. .++.+ |... ...-.++..-.+.||+||.++.++..-..-+.+ .
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 233469999863 11111 1111 011257888999999999999988766544444 6
Q ss_pred HHHHHHHcCceeeEEEEc
Q 012235 430 YMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 430 ~~~~i~~~Gf~~l~W~~~ 447 (467)
..++++..| ..+.|+..
T Consensus 308 V~~~L~~~~-~~~~lv~~ 324 (375)
T KOG2198|consen 308 VQEALQKVG-GAVELVDV 324 (375)
T ss_pred HHHHHHHhc-Ccccceee
Confidence 666777763 44555443
No 253
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.20 E-value=0.27 Score=52.15 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCCcc--EEEccCCCCc---cC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGLIP--LYVTLNQRLP---FF 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~i~--~~~~d~~~Lp---f~ 376 (467)
..++.+++. +|||+.+..|.=+.++|.. .-.|++ .|.+..-+..+. +-|.-. +...|...+| ++
T Consensus 235 ~aL~Pq~gE--RIlDmcAAPGGKTt~IAalMkn~G~I~A--nD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 235 MALDPQPGE--RILDMCAAPGGKTTHIAALMKNTGVIFA--NDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP 310 (460)
T ss_pred eecCCCCCC--eecchhcCCCchHHHHHHHHcCCceEEe--cccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC
Confidence 345566676 9999999999655555543 223455 665555444433 335433 3344555554 43
Q ss_pred CCccceEEe----cc--ccc-----cccc--------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHH-HHHHHHH
Q 012235 377 DNTMDLIHT----TG--FMD-----GWLD--------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDD-YMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis----~~--~L~-----h~~~--------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~-~~~~i~~ 436 (467)
. +||-|+. +. ++. -+.. ....+++|......+++||+|+.++.....++.+. +...+.+
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K 389 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK 389 (460)
T ss_pred c-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHh
Confidence 4 9999994 33 221 0000 00124788889999999999999988776655553 3334454
Q ss_pred c
Q 012235 437 F 437 (467)
Q Consensus 437 ~ 437 (467)
.
T Consensus 390 ~ 390 (460)
T KOG1122|consen 390 R 390 (460)
T ss_pred C
Confidence 3
No 254
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.15 E-value=1.2 Score=44.78 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=81.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC--CCccceEEeccccccc-----
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF--DNTMDLIHTTGFMDGW----- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~--d~sFDlVis~~~L~h~----- 392 (467)
+++|+-||.|.++..+.+.|.+++. .+|+.+.+.+....+..-..+.+|+..+... ...+|+++....=..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~-a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVA-ANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEE-EEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 5899999999999999888887543 3677777777766654333566777666532 3579999976422111
Q ss_pred ----cchh-hHHHHHHHHHhccCCCcEEEEEec-cc-C---CCCHHHHHHHHHHcCceeeEEEEccC-------CCCceE
Q 012235 393 ----LDML-LLDFILFDWDRILRPGGLLWIDRF-FC-N---KKDLDDYMYMFLQFRYKKHKWAISPK-------SKDEVY 455 (467)
Q Consensus 393 ----~~~~-~l~~~L~el~RvLKPGG~LiI~~~-~~-~---~~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~devy 455 (467)
.+.. .+-..+.++.+.++|. ++++-.- .. . ....+.+.+.++.+||.. .|.+..- .+..+|
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~-~~~~l~a~~~GvPQ~R~R~~ 158 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV-YWKLLNASDYGVPQNRERVF 158 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE-EEEEEEHHHcCCCCCCcEEE
Confidence 1111 1112233444555776 3333221 11 1 123447888889999974 4443332 456677
Q ss_pred EEEEe
Q 012235 456 LSALL 460 (467)
Q Consensus 456 l~avl 460 (467)
+.+..
T Consensus 159 ~ia~~ 163 (275)
T cd00315 159 IIGIR 163 (275)
T ss_pred EEEEe
Confidence 77654
No 255
>PRK13699 putative methylase; Provisional
Probab=94.05 E-value=0.16 Score=49.66 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=50.4
Q ss_pred cEEEccCCCC--ccCCCccceEEeccccc----cccc--------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHH
Q 012235 364 PLYVTLNQRL--PFFDNTMDLIHTTGFMD----GWLD--------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDD 429 (467)
Q Consensus 364 ~~~~~d~~~L--pf~d~sFDlVis~~~L~----h~~~--------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~ 429 (467)
.++++|+.++ .++++++|+|+..-... +... .+-.+..+.|+.|+|||||.+++.. .......
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~---~~~~~~~ 79 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY---GWNRVDR 79 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe---ccccHHH
Confidence 4566775443 46788899998874331 0000 1123578899999999999987622 1222345
Q ss_pred HHHHHHHcCcee---eEEEE
Q 012235 430 YMYMFLQFRYKK---HKWAI 446 (467)
Q Consensus 430 ~~~~i~~~Gf~~---l~W~~ 446 (467)
+...++..||.. +-|..
T Consensus 80 ~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 80 FMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred HHHHHHHCCCEEeeEEEEEC
Confidence 677888889853 45653
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=1.4 Score=42.72 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=92.4
Q ss_pred ccccccccCCcChHHHHHHH---hcCCCCCCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCH----HHHHHHHHcC
Q 012235 291 EKPKWVANRSVPVDFLISDI---LAIKPGETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGA----PFNEMIALRG 361 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~l---L~l~~g~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~----~~l~~a~~rg 361 (467)
+-+.|.- ........|..- +.+++++ +||=+|+.+|+...++++- + -.+++ ++.|+ +.+..+.+|.
T Consensus 50 eYR~Wnp-~RSKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYa--VEfs~R~~reLl~~a~~R~ 124 (231)
T COG1889 50 EYREWNP-RRSKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYA--VEFSPRPMRELLDVAEKRP 124 (231)
T ss_pred ceeeeCc-chhHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEE--EEecchhHHHHHHHHHhCC
Confidence 4566765 233333333322 3466777 9999999999999998876 3 34666 44444 4566677777
Q ss_pred CccEEEccCCCCc---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHHHHH---
Q 012235 362 LIPLYVTLNQRLP---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLDDYM--- 431 (467)
Q Consensus 362 ~i~~~~~d~~~Lp---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~~~~--- 431 (467)
++--+..|+..-. ..-+..|+|+..-+- +...+-+..++..-||+||+++++--.. ..+..+.+.
T Consensus 125 Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev 199 (231)
T COG1889 125 NIIPILEDARKPEKYRHLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEV 199 (231)
T ss_pred CceeeecccCCcHHhhhhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHH
Confidence 6544555654321 223458888875443 3335678899999999999887753322 222222333
Q ss_pred HHHHHcCceeeEEEEccC-CCCceEEE
Q 012235 432 YMFLQFRYKKHKWAISPK-SKDEVYLS 457 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~~~k-~~devyl~ 457 (467)
+.++.-+|+.+.-..... .+|...+.
T Consensus 200 ~kL~~~~f~i~e~~~LePye~DH~~i~ 226 (231)
T COG1889 200 EKLEEGGFEILEVVDLEPYEKDHALIV 226 (231)
T ss_pred HHHHhcCceeeEEeccCCcccceEEEE
Confidence 345555666665443332 45544443
No 257
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.89 E-value=0.51 Score=47.10 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=60.7
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDlV 383 (467)
.+.+++ +||..|+| .|..+..+++. |.+|+. ++.++...+.+++.+. ..+....... ....+.+|+|
T Consensus 162 ~~~~~~--~vli~g~g~vG~~~~~la~~~G~~V~~--~~~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 162 EVKPGE--TVLVIGLGGLGLNAVQIAKAMGAAVIA--VDIKEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 355565 77888876 46777777765 888777 5556666777766553 3332221111 1234679988
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+..... ...+.++.+.|+++|.++...
T Consensus 237 id~~g~---------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT---------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC---------HHHHHHHHHHhhcCCEEEEEC
Confidence 865433 257888999999999998754
No 258
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.46 E-value=0.1 Score=46.13 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=28.0
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIA 358 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~ 358 (467)
++||+|||.|.++..+++.+. ++++ ++..+.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~--~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIA--FEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEE--EecCHHHHHHHH
Confidence 479999999999999998865 4777 555566655544
No 259
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.42 E-value=0.3 Score=51.64 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=34.6
Q ss_pred ccCCCccceEEeccccccccch--h----------------------------------hHHHHHHHHHhccCCCcEEEE
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDM--L----------------------------------LLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~--~----------------------------------~l~~~L~el~RvLKPGG~LiI 417 (467)
-||+++.++++|+.++ ||... + ++..+|.-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 3789999999999999 88642 0 112233334566889999999
Q ss_pred EecccC
Q 012235 418 DRFFCN 423 (467)
Q Consensus 418 ~~~~~~ 423 (467)
......
T Consensus 236 ~~~Gr~ 241 (386)
T PLN02668 236 VCLGRT 241 (386)
T ss_pred EEecCC
Confidence 766553
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.25 E-value=0.11 Score=56.23 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQR 372 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~ 372 (467)
+|.+.+.+..+. .+||+-||||.++..++++-..|+|+ .+++.+++-|. .+|. .+|+++-+++
T Consensus 374 ~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGv--Ei~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 374 TIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGV--EISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeee--ecChhhcchhhhcchhcCccceeeeecchhh
Confidence 577788887776 89999999999999999998889994 44555555443 3343 6788885444
No 261
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.03 E-value=0.17 Score=48.56 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=63.9
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.+.|+|+|+|.++...++..-.|+++..| +...+.+.++ | .+.++.+|+.+..| ..-|+|+|-..=....
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~d--Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKD--PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecC--cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 78999999999998888887889996655 3333444433 3 26788899988887 5579999854322222
Q ss_pred chhhHHHHHHHHHhccCCCcEEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
... ...++..+...||-+|.++=
T Consensus 111 ~E~-qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEK-QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ccc-ccHHHHHHHHHhhcCCcccc
Confidence 221 23567777778888888643
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.69 E-value=0.32 Score=47.17 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=52.0
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC------CCEEEEEecCCCHHHHHHHHH---cCCccEEEccCCCCccC------
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ------NVTIVSTALNLGAPFNEMIAL---RGLIPLYVTLNQRLPFF------ 376 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~---rg~i~~~~~d~~~Lpf~------ 376 (467)
.++|. .|+++|.-.|+-+..+|+. ...|+|+|+|+.......... ...|.++++|..+...-
T Consensus 30 ~~kPd---~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 30 ELKPD---LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp HH--S---EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred HhCCC---eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 45655 8999999998766666542 468999998876543332222 25589999987654311
Q ss_pred --CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 377 --DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 377 --d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...-.+|+-... |.... +...|+-...++++|+++++.
T Consensus 107 ~~~~~~vlVilDs~--H~~~h--vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 107 ASPPHPVLVILDSS--HTHEH--VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp ----SSEEEEESS------SS--HHHHHHHHHHT--TT-EEEET
T ss_pred hccCCceEEEECCC--ccHHH--HHHHHHHhCccCCCCCEEEEE
Confidence 122334443222 33333 346777899999999999984
No 263
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.32 E-value=2.7 Score=43.06 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=32.6
Q ss_pred ceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHH----Hc-C---CccEEEccC-----CCCccCCCccceE
Q 012235 319 RIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIA----LR-G---LIPLYVTLN-----QRLPFFDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~----~r-g---~i~~~~~d~-----~~Lpf~d~sFDlV 383 (467)
-++||||+|...+-..|.. .|...+|+|+| +..++.|+ .+ + .|.++.... ..+...+..||+.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 3799999998844333332 38999997776 44444443 23 2 355554321 1122334689999
Q ss_pred Eeccccc
Q 012235 384 HTTGFMD 390 (467)
Q Consensus 384 is~~~L~ 390 (467)
+|+-.++
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9988773
No 264
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.30 E-value=0.094 Score=45.82 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=30.8
Q ss_pred ccceEEecccccccc----chhhHHHHHHHHHhccCCCcEEEEE
Q 012235 379 TMDLIHTTGFMDGWL----DMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 379 sFDlVis~~~L~h~~----~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.||+|+|..+. -|. .++++..++..+++.|+|||.|++.
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998765 443 3556889999999999999999994
No 265
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.03 E-value=0.21 Score=51.86 Aligned_cols=106 Identities=16% Similarity=0.058 Sum_probs=59.4
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEE-EecCCCHHHHHHHHH--cCC----ccEEEcc--CCCCccC-CCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVS-TALNLGAPFNEMIAL--RGL----IPLYVTL--NQRLPFF-DNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~g-vdiDiS~~~l~~a~~--rg~----i~~~~~d--~~~Lpf~-d~sFDlVis~~~ 388 (467)
+.+||+|.|.|+-+.++..--.+.-. +-+..++...+.... ++. .++-..+ ..+++++ ...|++|+...-
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 46999999999876655433111111 113334332222211 111 1222222 2244443 356888777665
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
|.+......+...++.+..++.|||.|+|.+...+.
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 556555544556889999999999999998765443
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.00 E-value=0.42 Score=46.38 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=51.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHH-------HHc---C---CccEEEccCC-CCc--cCCCccceE
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI-------ALR---G---LIPLYVTLNQ-RLP--FFDNTMDLI 383 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a-------~~r---g---~i~~~~~d~~-~Lp--f~d~sFDlV 383 (467)
...|||||.|.+...|+....+..-.++++-....+.. +.. + ++.+...++. -+| |..++.+-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 47899999999999999885443333355433222222 211 1 1334444322 222 222222222
Q ss_pred Eeccccccccchh-----hHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDML-----LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~-----~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+..+.=-|+.... .-...+.+..-+|++||.++..+
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2111111322110 01367889999999999988754
No 267
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=91.94 E-value=0.93 Score=46.64 Aligned_cols=121 Identities=16% Similarity=0.032 Sum_probs=74.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHH---H----HHcCC---ccEEE----------------------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEM---I----ALRGL---IPLYV---------------------- 367 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~---a----~~rg~---i~~~~---------------------- 367 (467)
.||-=|||.|.++..|+..|..+-| -+.|--|+-. + ...+. -+|++
T Consensus 153 ~iLvPGaGlGRLa~dla~~G~~~qG--NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 153 RILVPGAGLGRLAYDLACLGFKCQG--NEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred eEEecCCCchhHHHHHHHhcccccc--cHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 5788999999999999999988887 3444444211 1 11110 11111
Q ss_pred --------------ccCCCC---ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec-----ccCCC
Q 012235 368 --------------TLNQRL---PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF-----FCNKK 425 (467)
Q Consensus 368 --------------~d~~~L---pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~-----~~~~~ 425 (467)
||..+. +-..++||+|+..+.+. -... +-..+.-+..+|||||+++=..+ .....
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta~N--ileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TAHN--ILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-chHH--HHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 111111 01124699999887662 2222 45789999999999999654322 11111
Q ss_pred ---------CHHHHHHHHHHcCceeeEEE
Q 012235 426 ---------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 426 ---------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
..+++..+....||+.++-.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 34578888899999887665
No 268
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.77 E-value=0.17 Score=49.59 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=59.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC----ccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL----PFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L----pf~d~sFDlVis~~~ 388 (467)
.|+|.-||.|+.+...+.++..|+++|+|. .-+..++.+ | .+.|+++|..++ .+...-+|+|..+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp- 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP- 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC-
Confidence 789999999999999999999999966664 445555432 2 378999986543 23333455666543
Q ss_pred cccccchhhHHHHHHHHHhccCCCcE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGL 414 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~ 414 (467)
.|..+..+..-+.++...++|.|.
T Consensus 174 --pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 --PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred --CCCCcchhhhhhhhhhhhcchhHH
Confidence 344443345566666677777654
No 269
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=91.66 E-value=1.6 Score=43.41 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=65.6
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCH----HHHHHHHHcCC-ccEEEccCCCCc---cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGA----PFNEMIALRGL-IPLYVTLNQRLP---FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~----~~l~~a~~rg~-i~~~~~d~~~Lp---f~d~sFDl 382 (467)
-++++. +||=+|+++|+...+..+- |..-+.++++.|. ..+..|.+|.+ ++++. |+..-. ..-.-.|+
T Consensus 153 hikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE-DArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE-DARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec-cCCCchheeeeeeeEEE
Confidence 467887 8999999999988888776 4432223344443 56677777776 45443 433211 12235677
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|++.-+- ++..+.+..+..-.||+||.|+++.-
T Consensus 230 IFaDvaq-----pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 230 IFADVAQ-----PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EeccCCC-----chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 7765443 33345677888999999999999643
No 270
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.50 E-value=1 Score=45.50 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=52.4
Q ss_pred CceEEEECCCccHHHHHH-hhC---CCEEEEEecCCCHHHHHHHHH--------cCCccEEEccCCCCccCCCccceEEe
Q 012235 318 TRIGLDFGVGTGTFAARM-REQ---NVTIVSTALNLGAPFNEMIAL--------RGLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~L-a~~---g~~V~gvdiDiS~~~l~~a~~--------rg~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.++|+=||+|.=-++.-+ +++ +..++++|+| +.+++.+++ ...+.++.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 358999999977555444 433 4567775554 555544422 12378888998777665578999997
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.... ..... .-..++..+.+.++||..+++-.
T Consensus 199 AalV-g~~~e-~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALV-GMDAE-PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT--S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhc-ccccc-hHHHHHHHHHhhCCCCcEEEEec
Confidence 6655 22211 23689999999999999988843
No 271
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.06 E-value=10 Score=37.25 Aligned_cols=133 Identities=15% Similarity=0.074 Sum_probs=82.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHH----HHcCC---ccEEEccCCCCccC-CCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI----ALRGL---IPLYVTLNQRLPFF-DNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a----~~rg~---i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h 391 (467)
++.||||=.|++..+|.+.+..-.++..|+++.-++.+ .+.++ +....+|... ++. +..+|.|+-.+.--
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeCCcH-
Confidence 48999999999999999987655555566555444433 44444 4555566522 333 34789887654321
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
.....++.+-..-|+.==.|++ .+......+++++...+|....=.... .++..|-.-+.+|-
T Consensus 97 ----~lI~~ILee~~~~l~~~~rlIL----QPn~~~~~LR~~L~~~~~~I~~E~ile-E~~kiYEIlv~e~~ 159 (226)
T COG2384 97 ----TLIREILEEGKEKLKGVERLIL----QPNIHTYELREWLSANSYEIKAETILE-EDGKIYEILVVEKS 159 (226)
T ss_pred ----HHHHHHHHHhhhhhcCcceEEE----CCCCCHHHHHHHHHhCCceeeeeeeec-ccCeEEEEEEEecC
Confidence 1135677777777774445666 444555588888888877655333222 34556766666654
No 272
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.43 E-value=1.8 Score=45.05 Aligned_cols=106 Identities=18% Similarity=0.069 Sum_probs=64.0
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCC-C-----cc-CCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-L-----PF-FDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-L-----pf-~d~s 379 (467)
...+.+++ +||.+|+|. |..+..+++. |. .+++ ++.++...+.+.+.+...++.....+ + .+ ..+.
T Consensus 179 ~~~~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~--~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 179 LAEVKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIA--IDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred hccCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCC
Confidence 34455665 899999987 8888888776 65 4777 56667777777776333332221111 1 11 2346
Q ss_pred cceEEeccccc-------ccc-----chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMD-------GWL-----DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~-------h~~-----~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-.-.-. +.. ...+....+.++.+.|+|+|.+++..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 99998743210 000 00001357899999999999998864
No 273
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.93 E-value=0.45 Score=46.93 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--------CC---EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--------NV---TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--------g~---~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp- 374 (467)
+++-.++-.| .++|+|+.+..|.++..|.++ +. .++++|+-. ++--.| +--+++|+....
T Consensus 32 ideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~------MaPI~G-V~qlq~DIT~~st 103 (294)
T KOG1099|consen 32 IDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP------MAPIEG-VIQLQGDITSAST 103 (294)
T ss_pred hhhhhhHHhh-hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc------CCccCc-eEEeecccCCHhH
Confidence 3444444444 568999999999999988765 11 266655431 111122 234455554432
Q ss_pred -------cCCCccceEEeccccc----c----ccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 375 -------FFDNTMDLIHTTGFMD----G----WLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 375 -------f~d~sFDlVis~~~L~----h----~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|....-|+|+|..+.. | +...+.+..+|.-...+|||||.|+--.|-
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 4455889999976652 2 223333456677788999999998764443
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=89.86 E-value=0.85 Score=45.91 Aligned_cols=80 Identities=13% Similarity=0.236 Sum_probs=47.6
Q ss_pred ccEEEccCCCC--ccCCCccceEEecccccc----------ccch---hhHHHHHHHHHhccCCCcEEEEEecccCCCCH
Q 012235 363 IPLYVTLNQRL--PFFDNTMDLIHTTGFMDG----------WLDM---LLLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427 (467)
Q Consensus 363 i~~~~~d~~~L--pf~d~sFDlVis~~~L~h----------~~~~---~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~ 427 (467)
..++++|+..+ .+++++||+|+++-...- |... .-+...+.++.|+|||||.+++.. .....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~---~~~~~ 85 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN---STENM 85 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc---Cchhh
Confidence 35677776553 356789999999654310 1000 113578999999999999999842 11122
Q ss_pred HHHHHHHHHcCce---eeEEEE
Q 012235 428 DDYMYMFLQFRYK---KHKWAI 446 (467)
Q Consensus 428 ~~~~~~i~~~Gf~---~l~W~~ 446 (467)
.+...+.+.||. .+-|..
T Consensus 86 -~~~~~~~~~~f~~~~~iiW~k 106 (284)
T PRK11524 86 -PFIDLYCRKLFTIKSRIVWSY 106 (284)
T ss_pred -hHHHHHHhcCcceEEEEEEEe
Confidence 234445555663 344553
No 275
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.06 E-value=1.1 Score=38.54 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=58.9
Q ss_pred CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccceEEeccccccccchhhHH
Q 012235 327 GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 327 GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
|.|..+..+++. |.+|++ ++.++..++.+++.|...++.....++ . ...+.+|+|+-.-.- .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~--~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIA--TDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEE--EECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 457788888876 888888 556677788888777433333332221 1 223579999866553 3
Q ss_pred HHHHHHHhccCCCcEEEEEeccc
Q 012235 400 FILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..+.+...+|+|||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 68999999999999999976665
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.04 E-value=2.7 Score=42.87 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=57.4
Q ss_pred CCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEc---cCCCCccCCCccceEEecc
Q 012235 314 KPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVT---LNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 314 ~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~---d~~~Lpf~d~sFDlVis~~ 387 (467)
.+++ +||=+|+| .|..+..+++. |. .|++ .+.++..++.+.+.|...++.. +...+....+.+|+|+-..
T Consensus 168 ~~g~--~VlV~G~G~vG~~aiqlak~~G~~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGK--RVFVSGVGPIGCLIVAAVKTLGAAEIVC--ADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--EeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 3455 78878875 34566666655 76 5777 4556667777777664222221 1111111123589888654
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.- ...+....+.|++||.+++...
T Consensus 244 G~---------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 GH---------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC---------HHHHHHHHHHhhcCCEEEEEcc
Confidence 42 2467788899999999988654
No 277
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.03 E-value=3.5 Score=39.27 Aligned_cols=94 Identities=22% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceEEec
Q 012235 314 KPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLIHTT 386 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlVis~ 386 (467)
.+++ +||..|+|. |..+..+++. |.+|+++ +.++...+.+...+...++....... ....+.+|+|+..
T Consensus 133 ~~~~--~vli~g~~~~G~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGD--TVLVLGAGGVGLLAAQLAKAAGARVIVT--DRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 5555 899999985 6666666654 8888884 44555556665554222221111111 1124579999865
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..- ...+..+.+.|+++|.++....
T Consensus 209 ~~~---------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VGG---------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCC---------HHHHHHHHHhcccCCEEEEEcc
Confidence 432 1356777889999999887543
No 278
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.82 E-value=0.33 Score=45.42 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCCccceEEecccccccc--------chhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 376 FDNTMDLIHTTGFMDGWL--------DMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~--------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..++||.+.|..+++|.. ++.+-...+.++.++|||||.|++..+...
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 467899999999998753 233335789999999999999999887765
No 279
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=88.67 E-value=1.5 Score=45.00 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=54.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCc-----c
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLP-----F 375 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lp-----f 375 (467)
.+.+...+++ .++|.=+|.|..+..+++. +..|+| +|..+.+++.+.++ +.+.+++++...+. .
T Consensus 13 l~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vig--iD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 13 VEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIG--IDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 3445566666 8999999999999999986 367888 56667777766543 24778888766543 1
Q ss_pred CCCccceEEecccc
Q 012235 376 FDNTMDLIHTTGFM 389 (467)
Q Consensus 376 ~d~sFDlVis~~~L 389 (467)
..+++|.|+....+
T Consensus 89 ~~~~vDgIl~DLGv 102 (305)
T TIGR00006 89 LVTKIDGILVDLGV 102 (305)
T ss_pred CCCcccEEEEeccC
Confidence 23578998876443
No 280
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.11 E-value=0.72 Score=40.32 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.5
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTA 346 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvd 346 (467)
..-.|||||+|.+..-|.+.|+.-.|+|
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCccccc
Confidence 3579999999999999999999888854
No 281
>PRK10742 putative methyltransferase; Provisional
Probab=87.99 E-value=2.3 Score=42.43 Aligned_cols=85 Identities=9% Similarity=0.004 Sum_probs=56.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHH---HHc------------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI---ALR------------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a---~~r------------g~i~~~~~d 369 (467)
..+.+..+++++..-+|||.=+|+|..+..++.+|..|+.+ +-++.....+ .++ ..+.++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~v--Er~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 34556677777654489999999999999999999999984 4444332222 111 125566676
Q ss_pred CCCC-ccCCCccceEEecccccc
Q 012235 370 NQRL-PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 370 ~~~L-pf~d~sFDlVis~~~L~h 391 (467)
...+ .-...+||+|+..-.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 4433 222347999998877744
No 282
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.88 E-value=3.4 Score=42.23 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecC-CCHHHHHHHHHcCCccEEEccCCCC--ccCCCccceEEeccc
Q 012235 314 KPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALN-LGAPFNEMIALRGLIPLYVTLNQRL--PFFDNTMDLIHTTGF 388 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiD-iS~~~l~~a~~rg~i~~~~~d~~~L--pf~d~sFDlVis~~~ 388 (467)
.+++ +||=+|+|. |.++..+++. |..|++++.. .++..++.+.+.|. ..+....+.+ ....+.+|+|+-...
T Consensus 171 ~~g~--~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga-~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPR--RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA-TYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC-EEecCCccchhhhhhcCCCCEEEECcC
Confidence 4555 788888764 5666666665 8888886542 35666666766654 2221111110 011246888886554
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
- ...+.+..++|++||.+++...
T Consensus 248 ~---------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 V---------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred C---------HHHHHHHHHHccCCcEEEEEec
Confidence 2 2467888999999999887544
No 283
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=87.39 E-value=5.7 Score=39.56 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=80.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc---cCCCccceEEeccc-----cc-
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP---FFDNTMDLIHTTGF-----MD- 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp---f~d~sFDlVis~~~-----L~- 390 (467)
+++|+=||-|.+...+.+.|.+++. .+|+.+.+.+....+.. ....+|+..+. ++. .+|+++.... ..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~-a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVW-AVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEE-EEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEE-EeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 6899999999999999999976553 46777777776665544 67777877765 333 5999997532 11
Q ss_pred ---cccchh-hHHHHHHHHHhccCCCcEEEEEecccCC----CCHHHHHHHHHHcCceeeEEEEccC-------CCCceE
Q 012235 391 ---GWLDML-LLDFILFDWDRILRPGGLLWIDRFFCNK----KDLDDYMYMFLQFRYKKHKWAISPK-------SKDEVY 455 (467)
Q Consensus 391 ---h~~~~~-~l~~~L~el~RvLKPGG~LiI~~~~~~~----~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~devy 455 (467)
...+.. .+-..+.++.+.++|.-.++=-...... ...+.+.+.++.+||.. .|.+..- .+..+|
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v-~~~vlna~~yGvPQ~R~R~f 157 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNV-QWRVLNAADYGVPQNRERVF 157 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE-EEEEEEGGGGTSSBE-EEEE
T ss_pred cccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceee-hhccccHhhCCCCCceeeEE
Confidence 111221 1223445556667886543322222111 12457888889999864 4554332 455667
Q ss_pred EEEEee
Q 012235 456 LSALLE 461 (467)
Q Consensus 456 l~avlq 461 (467)
+.++..
T Consensus 158 ivg~r~ 163 (335)
T PF00145_consen 158 IVGIRK 163 (335)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 777553
No 284
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=86.99 E-value=9.4 Score=37.99 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=60.4
Q ss_pred ceEEEECCCcc-HHHHHHhhCCCEEEEEecCCCHHHHHHHH----HcCC-ccEEEccCCC-Ccc-CCCccceEEeccccc
Q 012235 319 RIGLDFGVGTG-TFAARMREQNVTIVSTALNLGAPFNEMIA----LRGL-IPLYVTLNQR-LPF-FDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG-~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~rg~-i~~~~~d~~~-Lpf-~d~sFDlVis~~~L~ 390 (467)
++||=+|=.-- +++..+......|+. +|+.+..++.+. +.|. +..++.|... +|- .-++||++++.-.-
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~V--vDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy- 122 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITV--VDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY- 122 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEE--E-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S-
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEE--EEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC-
Confidence 38999996654 455555555678888 455566665543 3454 6677777543 331 24899999997654
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH---HHHHHHHHHcCce
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL---DDYMYMFLQFRYK 440 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~---~~~~~~i~~~Gf~ 440 (467)
..+++..++......||..|-..+..+....... ..+++.+.++|+.
T Consensus 123 ---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 123 ---TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp ---SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred ---CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 2345678899999999987744443444333223 2677788888884
No 285
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=86.43 E-value=1.5 Score=47.88 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=69.3
Q ss_pred ceEEEECCCccHHHHHHhh------CCCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMRE------QNVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~------~g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
..|+=+|+|-|-+..+..+ +.+.+++ ++-.+.++.....+ +.+.++..|+..++-+..+.|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklya--vEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYA--VEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEE--EecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 4678899999966554432 3455666 55555555544433 34889999999998556899999985
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..- .+.+.+...+.|..+.+.|||+|..+=..
T Consensus 447 LLG-SFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 447 LLG-SFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhc-cccCccCCHHHHHHHHhhcCCCceEccch
Confidence 543 55566555789999999999999866543
No 286
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.09 E-value=5.5 Score=40.02 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc---CCCCccCCCccceEEeccc
Q 012235 315 PGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL---NQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 315 ~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~Lpf~d~sFDlVis~~~ 388 (467)
+++ +||-.|+|. |..+..+++. |. .+++ .+.++...+.+.+.+.-.++... ...+....+.+|+|+....
T Consensus 165 ~~~--~VLI~g~g~vG~~~~~lak~~G~~~v~~--~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGK--RVLVTGAGPIGALVVAAARRAGAAEIVA--TDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC
Confidence 454 778888765 5666666654 77 6776 45556666655555432222111 1122222345899987544
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. ...+.++.+.|+++|.++...
T Consensus 241 ~---------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A---------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C---------HHHHHHHHHHHhcCCEEEEEe
Confidence 3 246788899999999988654
No 287
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.52 E-value=6.7 Score=40.38 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=86.2
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccC---CCccceEEeccccccc--
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFF---DNTMDLIHTTGFMDGW-- 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~---d~sFDlVis~~~L~h~-- 392 (467)
.+++|+=||-|.+..-+.+.|.++.. ..|+.+.+++.-..+.. ..+...|...+... ...+|+++....=..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~-a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVF-ANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEE-EEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 37899999999999999998988765 36777777777766554 45555665544321 1178999975322111
Q ss_pred -------cch-hhHHHHHHHHHhccCCCcEEEEEecc---c-CCCCHHHHHHHHHHcCceeeEEEEccC-------CCCc
Q 012235 393 -------LDM-LLLDFILFDWDRILRPGGLLWIDRFF---C-NKKDLDDYMYMFLQFRYKKHKWAISPK-------SKDE 453 (467)
Q Consensus 393 -------~~~-~~l~~~L~el~RvLKPGG~LiI~~~~---~-~~~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~de 453 (467)
.+. ..+-.-+.++...++| -.|++-.-- . .....+.+.+.+++.||. +.|.+..- .+..
T Consensus 83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReR 160 (328)
T COG0270 83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRER 160 (328)
T ss_pred cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccE
Confidence 111 1122345666777788 444542211 1 233566899999999998 55544322 4556
Q ss_pred eEEEEEe
Q 012235 454 VYLSALL 460 (467)
Q Consensus 454 vyl~avl 460 (467)
+|+....
T Consensus 161 vfiig~~ 167 (328)
T COG0270 161 VFIVGFR 167 (328)
T ss_pred EEEEEec
Confidence 7777544
No 288
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.42 E-value=5.7 Score=39.68 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=57.9
Q ss_pred HHhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC----ccCCCccc
Q 012235 309 DILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL----PFFDNTMD 381 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L----pf~d~sFD 381 (467)
....+.+++ +||-+|+| .|..+..+++. |.. ++. .+.+....+.+.+.+...++....... ....+.+|
T Consensus 153 ~~~~~~~g~--~vlI~g~g~vg~~~~~la~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 153 DLLGIKPGD--SVLVFGAGPIGLLLAQLLKLNGASRVTV--AEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCc
Confidence 344555665 78888865 24555555554 766 665 445566666665555322222211111 11345689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+....- ...+.++.+.|+++|.++....
T Consensus 229 ~v~~~~~~---------~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 229 VVIEATGV---------PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EEEECCCC---------hHHHHHHHHHHhcCCEEEEEec
Confidence 99865322 2467888999999999887543
No 289
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.19 E-value=6.9 Score=40.09 Aligned_cols=96 Identities=11% Similarity=-0.051 Sum_probs=57.3
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=.|+|. |..+..+++. |.. |++ ++.++...+.+.+.|.-.++........ .....+|+
T Consensus 173 ~~~~g~--~VlV~G~g~vG~~a~~~ak~~G~~~Vi~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGD--SVAVIGCGGVGDAAIAGAALAGASKIIA--VDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 455666 788888753 4555666655 774 777 5556666777766664222221111110 12235898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+.+..+.|++||.+++...
T Consensus 249 vid~~g~---------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVGR---------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCCC---------HHHHHHHHHHhccCCEEEEECC
Confidence 8854332 2467778889999999987544
No 290
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.13 E-value=6.4 Score=39.58 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC----Cc--cCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR----LP--FFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~----Lp--f~d~sFD 381 (467)
...+.+++ +||-.|+|. |..+..+++. |.+|+++ ..++...+.+.+.+...++...... +. .....+|
T Consensus 154 ~~~l~~g~--~vLI~g~g~vG~~a~~lA~~~g~~v~~~--~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 154 RAGVTAGD--TVLVVGAGPIGLGVIQVAKARGARVIVV--DIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 34556666 788888763 6676777766 8888874 3445556666555532222211111 10 1234589
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ...+.++.+.|+++|.++...
T Consensus 230 ~vld~~g~---------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 230 VVIDATGN---------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEEECCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 99875422 246788899999999988643
No 291
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=85.12 E-value=1.7 Score=40.21 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCcCccCccccccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012235 20 LVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVYDGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEK 95 (467)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
.||=+=.|-|-+|.||.|+..... +++.......+.. .+..-+ ..--.||++||++|++|.+-|||
T Consensus 84 ~imPlYtiGI~~f~lY~l~Ki~~~-k~~~~~~~~~~~~---~~~~~~------~~~~~eL~qLq~rL~qTE~~m~k 149 (152)
T PF15361_consen 84 QIMPLYTIGIVLFILYTLFKIKKK-KDSPRERKSSTER---KGNTKR------KITDYELAQLQERLAQTERAMEK 149 (152)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhc-CCccccccccccc---cccccc------cchHHHHHHHHHHHHHHHHHHHH
Confidence 344446666778888998876522 2221111111111 111112 24457999999999999999995
No 292
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.46 E-value=8.7 Score=38.19 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=58.8
Q ss_pred HHhcCCCCCCceEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCcc
Q 012235 309 DILAIKPGETRIGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
....+.+++ +||=.| .|.|..+..+++. |.+|+++ +.++...+.+.+.|.-.++......+. ...+.+
T Consensus 137 ~~~~~~~g~--~vlI~ga~g~vG~~aiqlA~~~G~~vi~~--~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 137 EICKPKAGE--TVVVNGAAGAVGSLVGQIAKIKGCKVIGC--AGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred HhcCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 344566666 777776 4566777777765 8888774 445556666666554223322211111 123568
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+|+....- ..+.+..+.|+++|.++..
T Consensus 213 d~vld~~g~----------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFDNVGG----------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEECCCH----------HHHHHHHHhhccCCEEEEE
Confidence 988854321 4578889999999998864
No 293
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=84.33 E-value=2.7 Score=43.91 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH--------H-HHHHHcC----CccEEEccCCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF--------N-EMIALRG----LIPLYVTLNQRL 373 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~--------l-~~a~~rg----~i~~~~~d~~~L 373 (467)
.......++|+ .|.|==.|||.+....+.-|.-|+|.|+|.-..- + ...++-| .+.++.+|...-
T Consensus 200 ~AN~Amv~pGd--ivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 200 MANQAMVKPGD--IVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP 277 (421)
T ss_pred HhhhhccCCCC--EEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc
Confidence 33445577888 8999999999999999989999999888853210 0 1111222 256777887766
Q ss_pred ccC-CCccceEEecccc------------------------cccc------chhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 PFF-DNTMDLIHTTGFM------------------------DGWL------DMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 pf~-d~sFDlVis~~~L------------------------~h~~------~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|.. .-.||.|+|.-.. .|++ -...+...+.-..|+|.-||.+++--+
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 643 4579999986221 1221 112233566778899999999987443
No 294
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.83 E-value=10 Score=37.89 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=57.3
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-cCCCccceEEecc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-FFDNTMDLIHTTG 387 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-f~d~sFDlVis~~ 387 (467)
..+.+++ +||-.|+| .|..+..+++. |..|+.+ +.+....+.+.+.+...++........ ...+.+|+|+...
T Consensus 158 ~~~~~~~--~vlI~g~g~iG~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 158 AGPRPGE--RVAVLGIGGLGHLAVQYARAMGFETVAI--TRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred hCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC
Confidence 3455555 78888886 56666666655 8888874 445556666655553222221111110 0124689888643
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.- ...+.++.+.|+++|.++...
T Consensus 234 ~~---------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 VS---------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred Cc---------HHHHHHHHHhcccCCEEEEEC
Confidence 32 246788899999999988754
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.77 E-value=8.7 Score=39.80 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=64.3
Q ss_pred eEEEECCCc-cHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-C-----ccC-CCccceEEecccc
Q 012235 320 IGLDFGVGT-GTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-L-----PFF-DNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGt-G~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-L-----pf~-d~sFDlVis~~~L 389 (467)
+|+=+|||+ |.++..+++. | ..|+. +|.++.-++.|++.+....+...... . ... ...+|+|+=....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv--~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIV--VDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEE--eCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 899999997 6676666665 4 45666 57888888888885543333332221 1 111 2369999855543
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
...+.++.+++||||.+++.......
T Consensus 249 ---------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 249 ---------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ---------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 35899999999999999997766544
No 296
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=83.33 E-value=11 Score=38.25 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=56.8
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
..+.+++ +||=.|+| .|..+..+++. |..|+++ +.++...+.+.+.|.-.++.. ... ..+.+|+++-...
T Consensus 161 ~~~~~g~--~VlV~G~g~iG~~a~~~a~~~G~~vi~~--~~~~~~~~~a~~~Ga~~vi~~--~~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 161 ASLPPGG--RLGLYGFGGSAHLTAQVALAQGATVHVM--TRGAAARRLALALGAASAGGA--YDT--PPEPLDAAILFAP 232 (329)
T ss_pred cCCCCCC--EEEEEcCCHHHHHHHHHHHHCCCeEEEE--eCChHHHHHHHHhCCceeccc--ccc--CcccceEEEECCC
Confidence 4566666 88888865 34455556554 8888774 444555777777664222211 111 1245787654332
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. ...+....+.|++||.+++...
T Consensus 233 ~---------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 A---------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred c---------HHHHHHHHHhhCCCcEEEEEec
Confidence 2 2468888899999999988654
No 297
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.93 E-value=14 Score=37.08 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=59.4
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC-CC-----ccCCCc
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ-RL-----PFFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~-~L-----pf~d~s 379 (467)
....+.+++ +||=.|+ |.|..+..+++. |.+|++ .+.++...+.+.+.|.-.++..... .+ ....+.
T Consensus 132 ~~~~~~~g~--~VLI~ga~g~vG~~aiqlAk~~G~~Vi~--~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 132 EICGVKGGE--TVMVNAAAGAVGSVVGQIAKLKGCKVVG--AAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HHhCCCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence 444566776 7887774 567777777766 888877 4445556666666553222221111 11 012346
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-...- ..+.+..++|++||.++...
T Consensus 208 vdvv~d~~G~----------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNVGG----------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECCCH----------HHHHHHHHHhCcCcEEEEec
Confidence 8988854322 24578889999999998753
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.45 E-value=8 Score=39.87 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=57.5
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
..+.+++ +||=.|+|. |..+..+++. |. .|++ ++.++..++.+.+.|...++......+. ..++.+|+
T Consensus 187 ~~i~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi~--~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQ--SVAVVGLGGVGLSALLGAVAAGASQVVA--VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEE--EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 3456666 677788753 4555666654 77 5777 5566666777766554222222111110 11236898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+....+.|++||.+++...
T Consensus 263 vid~~G~---------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 263 AFEMAGS---------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EEECCCC---------hHHHHHHHHHHhcCCEEEEEcc
Confidence 8854332 2467778899999999887543
No 299
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=82.43 E-value=4.6 Score=39.95 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHH-------HHHHc--------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNE-------MIALR--------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~-------~a~~r--------g~i~~~~~d 369 (467)
..+.+..+++++...+|||.=+|-|.-+..++..|.+|++ ++-++.+.. .+... ..+.++++|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~--lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTG--LERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEE--EE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEE--EECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 3455667777664448999999999999999888999999 555543322 22211 126788887
Q ss_pred CCC-CccCCCccceEEecccccc
Q 012235 370 NQR-LPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 370 ~~~-Lpf~d~sFDlVis~~~L~h 391 (467)
... ++.++++||+|+..-.+.+
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHhhcCCCCCEEEECCCCCC
Confidence 554 4566899999999776643
No 300
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=81.60 E-value=12 Score=42.44 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCccceEEeccccccccchhhHHHHH-HHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC---CC
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFIL-FDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK---SK 451 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L-~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k---~~ 451 (467)
.-++|+|++..=.........++..+ ..+.++|.++|.+++-+|...=-..+ .....+.+. |..+.+....- ..
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~-F~~V~l~qT~~SSs~T 491 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRY-FKSVELVQTQFSSSFT 491 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhh-cCceEEEECCCCCCCc
Confidence 34799999865432222122233344 45668889999999987765322222 566777777 89998887766 34
Q ss_pred CceEEEEEeecCC
Q 012235 452 DEVYLSALLEKPP 464 (467)
Q Consensus 452 devyl~avlqKP~ 464 (467)
.|||+. ++|+.
T Consensus 492 SEVYlv--~~~~~ 502 (675)
T PF14314_consen 492 SEVYLV--FQKLK 502 (675)
T ss_pred eEEEEE--Eeccc
Confidence 689984 56653
No 301
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.20 E-value=12 Score=37.81 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCC-------C--ccCC
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQR-------L--PFFD 377 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-------L--pf~d 377 (467)
...+.+++ +||-.|+|. |..+..+++. |.. |+. ...+....+.+.+.+.-.++...... + ....
T Consensus 157 ~~~~~~g~--~vlI~g~g~vG~~a~~lak~~G~~~v~~--~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGD--TVLVFGAGPIGLLTAAVAKAFGATKVVV--TDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCC
Confidence 44556665 666677654 5666666665 776 666 34444445555444432222221111 1 1223
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+|+|+....- ...+.+..+.|+++|.++...
T Consensus 233 ~~~d~vld~~g~---------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 233 KGPDVVIECTGA---------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCEEEECCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 559999865443 236788899999999988643
No 302
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.23 E-value=16 Score=30.79 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=60.6
Q ss_pred CCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEeccccccccchhh
Q 012235 326 VGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 326 CGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~~~~~ 397 (467)
||.|.++..+++. +..++. +|..+...+.+...+ +.++.+|..+... .-...|.|++...- + .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvv--id~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~-----d-~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVV--IDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTDD-----D-E 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESSS-----H-H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEE--EECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccCC-----H-H
Confidence 4556666666543 558888 555667778887777 7788898765431 23567777765431 2 1
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
.-..+....|-+-|...++... ......+.++.+|...
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~------~~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARV------NDPENAELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE------SSHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHCCCCeEEEEE------CCHHHHHHHHHCCcCE
Confidence 2345556667777888877622 2225566777777644
No 303
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.88 E-value=17 Score=36.64 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=56.5
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCC---CC-c-cCCCccce
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQ---RL-P-FFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~---~L-p-f~d~sFDl 382 (467)
+.+.+++ +||=+|+| .|.++..+++. |.. |+. ++.++...+.+.+.|...++..... .+ . ...+.+|+
T Consensus 159 ~~~~~g~--~vlV~G~G~vG~~~~~~ak~~G~~~vi~--~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRD--TVLVVGAGPVGLGALMLARALGAEDVIG--VDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4556666 77777765 23455555554 777 777 5555666666666563222221111 11 0 12346899
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+.+..+.|+++|.+++...
T Consensus 235 vid~~g~---------~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 235 AIECSGN---------TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EEECCCC---------HHHHHHHHHHhhcCCEEEEEcC
Confidence 9854432 2456778899999999987543
No 304
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=79.88 E-value=7.9 Score=38.71 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC-CccEEEccCCCCccC
Q 012235 304 DFLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG-LIPLYVTLNQRLPFF 376 (467)
Q Consensus 304 d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg-~i~~~~~d~~~Lpf~ 376 (467)
+.....++...+. ..+|+|||||.=-++..+... +..++++|+ ...+.+.+.. -+ ...+.+.|...- .+
T Consensus 93 d~fY~~if~~~~~-p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DI--D~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRIPP-PDSVLDIGCGLNPLALPWMPEAPGATYIAYDI--DSQLVEFLNAFLAVLGVPHDARVRDLLSD-PP 168 (251)
T ss_dssp HHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EEEEEES--BHHHHHHHHHHHHHTT-CEEEEEE-TTTS-HT
T ss_pred HHHHHHHHhcCCC-CchhhhhhccCCceehhhcccCCCcEEEEEeC--CHHHHHHHHHHHHhhCCCcceeEeeeecc-CC
Confidence 3445566653321 348999999999999877766 567778555 4555555432 23 245556665443 24
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHH-HHHHHHHHcCceeeEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLD-DYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~-~~~~~i~~~Gf~~l~W~~ 446 (467)
....|+.+..=++ |..+.......+.-+.++ +- =.++++.+.. ....+. .+...++.. ...-.|.+
T Consensus 169 ~~~~DlaLllK~l-p~le~q~~g~g~~ll~~~-~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~-~~~~~~~~ 239 (251)
T PF07091_consen 169 KEPADLALLLKTL-PCLERQRRGAGLELLDAL-RS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEAL-AAERGWIV 239 (251)
T ss_dssp TSEESEEEEET-H-HHHHHHSTTHHHHHHHHS-CE-SEEEEEEES-------TTHHHCHHHHHHHH-CCTTCEEE
T ss_pred CCCcchhhHHHHH-HHHHHHhcchHHHHHHHh-CC-CeEEEeccccccccCccccccCHHHHHHHh-cccCCcee
Confidence 6779999988777 544433222223333333 21 2334433322 122333 566666665 33334543
No 305
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.87 E-value=24 Score=36.17 Aligned_cols=136 Identities=10% Similarity=0.096 Sum_probs=76.4
Q ss_pred EEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEecccccc--------
Q 012235 321 GLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDG-------- 391 (467)
Q Consensus 321 VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h-------- 391 (467)
|+|+-||.|.++.-+.+.|.+++. .+|+.+.+.+....+..-.++.+|+..+... -..+|+++....=..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~-a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVF-ASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEE-EEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence 589999999999999988988753 3556566666555443224455676665421 135899986532111
Q ss_pred -ccchhhHHHHHHHHH---hccCCCcEEEEEec---ccC--CCCHHHHHHHHHHcCceeeEEEEccC------CCCceEE
Q 012235 392 -WLDMLLLDFILFDWD---RILRPGGLLWIDRF---FCN--KKDLDDYMYMFLQFRYKKHKWAISPK------SKDEVYL 456 (467)
Q Consensus 392 -~~~~~~l~~~L~el~---RvLKPGG~LiI~~~---~~~--~~~~~~~~~~i~~~Gf~~l~W~~~~k------~~devyl 456 (467)
+.+. ...++.++. +.++|. .+++-.- ... ......+...++.+||..-....... .++.+|+
T Consensus 80 ~~~d~--r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ 156 (315)
T TIGR00675 80 GFEDT--RGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYI 156 (315)
T ss_pred CCCCc--hhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEE
Confidence 1121 123444444 445775 3333211 111 12345778888999996543332222 5666777
Q ss_pred EEEe
Q 012235 457 SALL 460 (467)
Q Consensus 457 ~avl 460 (467)
.+..
T Consensus 157 ia~r 160 (315)
T TIGR00675 157 VGFR 160 (315)
T ss_pred EEEe
Confidence 7754
No 306
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=79.66 E-value=19 Score=34.93 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=55.4
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCc-cEEEccCCCCccCCCccceEEe
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLI-PLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i-~~~~~d~~~Lpf~d~sFDlVis 385 (467)
...+.+++ ++|=.|+|. |..+..+++. |.. |++ ++.+.+..+.+.+.+.. .+.... ... ...+.+|+|+.
T Consensus 92 ~~~~~~g~--~vlI~g~g~vg~~~i~~a~~~g~~~vi~--~~~~~~~~~~~~~~g~~~~~~~~~-~~~-~~~~~~d~vl~ 165 (277)
T cd08255 92 DAEPRLGE--RVAVVGLGLVGLLAAQLAKAAGAREVVG--VDPDAARRELAEALGPADPVAADT-ADE-IGGRGADVVIE 165 (277)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEE--ECCCHHHHHHHHHcCCCccccccc-hhh-hcCCCCCEEEE
Confidence 34455665 777778764 5555556554 777 777 45555556666655511 111110 011 12456898886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...- ...+.+..+.|+++|.++...
T Consensus 166 ~~~~---------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASGS---------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccCC---------hHHHHHHHHHhcCCcEEEEEe
Confidence 4332 246778889999999987643
No 307
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.41 E-value=19 Score=36.97 Aligned_cols=96 Identities=10% Similarity=0.071 Sum_probs=58.5
Q ss_pred HhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHH-HcCCccEEEccCC-CCc-----cCCCc
Q 012235 310 ILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIA-LRGLIPLYVTLNQ-RLP-----FFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~d~~-~Lp-----f~d~s 379 (467)
...+.+++ +||=.|+ |.|.++..+++. |.+|++ .+.++...+.++ +.|.-.++..... .+. ...+.
T Consensus 153 ~~~~~~g~--~VlV~GaaG~vG~~aiqlAk~~G~~Vi~--~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 153 VCSPKKGD--SVFVSAASGAVGQLVGQLAKLHGCYVVG--SAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred hcCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 34466676 8888887 467787777766 888887 445555566555 3453222221111 110 11246
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-...- ..+.+..+.|++||.+++..
T Consensus 229 vD~v~d~vG~----------~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 229 IDIYFDNVGG----------DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred cEEEEECCCH----------HHHHHHHHHhccCCEEEEEC
Confidence 8888854331 36778889999999998754
No 308
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.01 E-value=11 Score=35.05 Aligned_cols=112 Identities=14% Similarity=0.076 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCC-CceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGE-TRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~-~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~ 376 (467)
.+..++.+.++. ..+.+|+|.|.|.+....++.| ...+|++ +.+-.+...+. .+ ...|..-|.....+.
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvE--LNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVE--LNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCcee--ccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 344555543322 2378999999999988888887 4566644 44444333321 12 255666676666655
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~ 427 (467)
+-.+-+|+-...+ +..+-..+..-+..|-.++-..|.-+...+
T Consensus 138 dy~~vviFgaes~--------m~dLe~KL~~E~p~nt~vvacRFPLP~w~l 180 (199)
T KOG4058|consen 138 DYRNVVIFGAESV--------MPDLEDKLRTELPANTRVVACRFPLPTWQL 180 (199)
T ss_pred ccceEEEeehHHH--------HhhhHHHHHhhCcCCCeEEEEecCCCccch
Confidence 5444444433333 223444555566777777776666555444
No 309
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=78.11 E-value=22 Score=35.78 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=56.3
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHH-cCCccEEEccCCCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIAL-RGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~-rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
..+.++...+||=.|+ |.|..+..+++. |. .|++ .+.+++..+.+.+ -|.-.++......+. ..++.+
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~--~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVG--ICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 3455541127777775 567777777765 87 6887 4445555565554 443222222111111 123568
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+....- ..+.+..+.|+++|.++...
T Consensus 226 d~vid~~g~----------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVGG----------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCCc----------HHHHHHHHHhccCCEEEEEe
Confidence 999854332 23577889999999988743
No 310
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=77.90 E-value=16 Score=36.72 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=53.5
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccce
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDl 382 (467)
.+.+++ +||-.|+| .|..+..+++. |. .++++ +.+....+.+.+.+...++......+ -...+.+|+
T Consensus 164 ~~~~~~--~VlI~g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGS--TVAVIGAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 345555 77777765 35566666655 75 67664 44455555555544222222211111 012356898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+....- ...+.+..+.|+++|.++..
T Consensus 240 vld~~g~---------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVGF---------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccCC---------HHHHHHHHHHhhcCCEEEEE
Confidence 8864322 14678888999999998764
No 311
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.80 E-value=11 Score=38.40 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=52.8
Q ss_pred CCCCCCceEEEECCCc-cHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc
Q 012235 313 IKPGETRIGLDFGVGT-GTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 313 l~~g~~r~VLDIGCGt-G~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
..+++ +||=+|||. |.++..++++ +..|++++ .++..++.+.+-+.. . .. ..+. ....+|+|+-.-.
T Consensus 161 ~~~g~--~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~--~~~~k~~~a~~~~~~-~-~~--~~~~-~~~g~d~viD~~G 231 (341)
T cd08237 161 HKDRN--VIGVWGDGNLGYITALLLKQIYPESKLVVFG--KHQEKLDLFSFADET-Y-LI--DDIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe--CcHhHHHHHhhcCce-e-eh--hhhh-hccCCcEEEECCC
Confidence 45566 889899764 4455555553 35677744 445555555442221 1 11 1111 1124888885433
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
- . . ....+.+..++|++||.+++...
T Consensus 232 ~-~-~----~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 232 G-R-G----SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C-C-c----cHHHHHHHHHhCcCCcEEEEEee
Confidence 1 0 0 13578889999999999987654
No 312
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.77 E-value=2.9 Score=44.22 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=50.6
Q ss_pred CccEEEccCCCCc--cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 362 LIPLYVTLNQRLP--FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 362 ~i~~~~~d~~~Lp--f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
.+.++.+++.+.- .+++++|.++.+..+ .|.++..+...+.++.|+++|||.+++=+.....
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 3777887755542 468999999999999 7888888999999999999999999996655443
No 313
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.03 E-value=18 Score=35.74 Aligned_cols=96 Identities=17% Similarity=0.038 Sum_probs=56.0
Q ss_pred CCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccC--CCC-c-cCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLN--QRL-P-FFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~L-p-f~d~sFDlVis 385 (467)
..+++ +||=+|+|. |..+..+++. |.. |+. ++.++..++.+.+.+...++.... ..+ . .....+|+|+-
T Consensus 118 ~~~g~--~VlV~G~G~vG~~~~~~ak~~G~~~Vi~--~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGR--RVLVVGAGMLGLTAAAAAAAAGAARVVA--ADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 34555 788888752 4455555554 776 776 455666667776665422221110 000 0 12345888876
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
...- ...+.+..+.|+|+|.+++....
T Consensus 194 ~~G~---------~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 194 FSGA---------TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCCC---------hHHHHHHHHHhcCCCEEEEeccC
Confidence 4432 25688889999999999876543
No 314
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=76.44 E-value=21 Score=36.79 Aligned_cols=102 Identities=21% Similarity=0.137 Sum_probs=63.0
Q ss_pred HHHHhcCCCCCCceEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEE---cc-CCCC-c-cCC
Q 012235 307 ISDILAIKPGETRIGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYV---TL-NQRL-P-FFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~---~d-~~~L-p-f~d 377 (467)
+.+...+++++ +||=.| .|.|.++..|++. |..++++ .-+.+..+.+.+.|.-..+. .| .+.. . ...
T Consensus 134 l~~~~~l~~g~--~VLV~gaaGgVG~~aiQlAk~~G~~~v~~--~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 134 LFDRAGLKPGE--TVLVHGAAGGVGSAAIQLAKALGATVVAV--VSSSEKLELLKELGADHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred HHHhcCCCCCC--EEEEecCCchHHHHHHHHHHHcCCcEEEE--ecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCC
Confidence 44445577777 888887 4566899999987 6565553 23334444566655322222 21 1111 1 223
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..+|+|+..-.- ..+.+..+.|+++|.++......
T Consensus 210 ~gvDvv~D~vG~----------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 210 KGVDVVLDTVGG----------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCceEEEECCCH----------HHHHHHHHHhccCCEEEEEecCC
Confidence 469999976654 57778899999999998855443
No 315
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=76.26 E-value=27 Score=35.06 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=55.7
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCC---CC-cc-CCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQ---RL-PF-FDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~---~L-pf-~d~sFD 381 (467)
...+.++. +||-.|+|. |..+..+++. |.. ++. ++.+....+.+.+.+...++..... .+ .. ....+|
T Consensus 154 ~~~~~~~~--~vlI~g~g~~g~~~~~lA~~~G~~~v~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 229 (343)
T cd08236 154 LAGITLGD--TVVVIGAGTIGLLAIQWLKILGAKRVIA--VDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGAD 229 (343)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCC
Confidence 34455565 778888654 5566666654 776 766 4444555555555443222221111 11 11 223589
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ...+..+.+.|+++|.++...
T Consensus 230 ~vld~~g~---------~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 230 LVIEAAGS---------PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEECCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 99865321 246788899999999987754
No 316
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=75.81 E-value=2.1 Score=43.31 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=51.7
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHH-----------H----HHcC-CccEEEccCCCCcc-CCC--
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEM-----------I----ALRG-LIPLYVTLNQRLPF-FDN-- 378 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~-----------a----~~rg-~i~~~~~d~~~Lpf-~d~-- 378 (467)
++|||+|||.|.-.......| ..+.. .|.++..++. + .+.. ...+......+.-+ ..+
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~f--qD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVHF--QDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred ceeEecCCcccccchhhhhhccceeee--Eecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 389999999997777666555 44444 3333322211 0 0111 12222221111111 123
Q ss_pred ccceEEeccccccccchhhHHHH-HHHHHhccCCCcEEEEE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFI-LFDWDRILRPGGLLWID 418 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~-L~el~RvLKPGG~LiI~ 418 (467)
.||+|.++..+...... +.+ .......++++|.+++.
T Consensus 196 ~ydlIlsSetiy~~~~~---~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSL---AVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred chhhhhhhhhhhCcchh---hhhHhhhhhhcCCccchhhhh
Confidence 79999998887544333 233 56677788999988773
No 317
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.05 E-value=6.1 Score=39.99 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=56.6
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+.++. ...|+|+-.|.++..|.+++..|++ +|- ..|.+..-..|.+.....|...+.......|-.+|..+=
T Consensus 209 L~~~M--~avDLGAcPGGWTyqLVkr~m~V~a--VDn-g~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE 280 (358)
T COG2933 209 LAPGM--WAVDLGACPGGWTYQLVKRNMRVYA--VDN-GPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE 280 (358)
T ss_pred hcCCc--eeeecccCCCccchhhhhcceEEEE--ecc-chhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc
Confidence 44565 7899999999999999999999999 443 356666667788888888877775446779999987764
No 318
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=74.31 E-value=16 Score=36.62 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=50.2
Q ss_pred eEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+||=+||| .|.++..+++. |..++.+ .|..+..++.+.....+ +.... ..+.+|+|+-.-.-
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~-~~~~~~rl~~a~~~~~i-----~~~~~--~~~g~Dvvid~~G~-------- 210 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAV-WETNPRRRDGATGYEVL-----DPEKD--PRRDYRAIYDASGD-------- 210 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEE-eCCCHHHHHhhhhcccc-----Chhhc--cCCCCCEEEECCCC--------
Confidence 67777876 46677777765 7764432 35555545444332211 11110 23468988865443
Q ss_pred HHHHHHHHHhccCCCcEEEEEec
Q 012235 398 LDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...+.++.+.|++||.+++...
T Consensus 211 -~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEEEee
Confidence 2467888899999999987654
No 319
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=74.13 E-value=29 Score=35.00 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=58.2
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH-cCCccEEEcc-CCCC-----ccCCC
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL-RGLIPLYVTL-NQRL-----PFFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~-rg~i~~~~~d-~~~L-----pf~d~ 378 (467)
....+.+++ +||=.|+ |.|..+..+++. |.+|+++ ..+....+.+.+ .|.-.++... ...+ ....+
T Consensus 145 ~~~~~~~g~--~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGE--TVFVSAASGAVGQLVGQLAKLKGCYVVGS--AGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCC
Confidence 334566776 8887775 566777777765 8888774 444555565655 4532222211 1111 01125
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+|+|+-...- ..+.+..+.|+++|.++...
T Consensus 221 gvd~v~d~~g~----------~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVGG----------KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCCH----------HHHHHHHHHhccCcEEEEec
Confidence 68888854321 45778899999999988643
No 320
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.00 E-value=24 Score=38.81 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCCCCceEEEECCCcc-HHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-C----------CCc------
Q 012235 314 KPGETRIGLDFGVGTG-TFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-Q----------RLP------ 374 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG-~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~----------~Lp------ 374 (467)
.++. +|+=+|+|.- ..+...++. |..|++ .|.++..++.+.+-|. .++..+. + .+.
T Consensus 163 ~pg~--kVlViGaG~iGL~Ai~~Ak~lGA~V~a--~D~~~~rle~aeslGA-~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPA--KVLVIGAGVAGLAAIGAAGSLGAIVRA--FDTRPEVAEQVESMGA-EFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCC--EEEEECCcHHHHHHHHHHHHCCCEEEE--EeCCHHHHHHHHHcCC-eEEEeccccccccccchhhhcchhHHHH
Confidence 3454 8999999975 455555554 888888 6667777888877663 2221111 0 010
Q ss_pred ----cCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 ----FFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 ----f~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+ +.+|+|+.......-..+ ..+.+++.+.+||||.++...
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP---~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAP---KLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCc---chHHHHHHHhcCCCCEEEEEc
Confidence 011 469999987654211112 123599999999999987654
No 321
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=73.89 E-value=27 Score=38.18 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=66.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC----C--CEEEEEecCCCHHHHHHHHHc----CC---ccEEEccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ----N--VTIVSTALNLGAPFNEMIALR----GL---IPLYVTLNQR 372 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----g--~~V~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~ 372 (467)
.+.+++...+.. +|.|-.||+|.+.....+. . ...+| .++.......++.. +. +...+++...
T Consensus 177 liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yG--qE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~ 252 (489)
T COG0286 177 LIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYG--QEINDTTYRLAKMNLILHGIEGDANIRHGDTLS 252 (489)
T ss_pred HHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEE--EeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence 344555554555 8999999999776655543 1 34556 55555555555432 21 2444554333
Q ss_pred Ccc-----CCCccceEEeccccc--cccc--------------------hhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 373 LPF-----FDNTMDLIHTTGFMD--GWLD--------------------MLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 373 Lpf-----~d~sFDlVis~~~L~--h~~~--------------------~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
-|. ..+.||.|+++..+. .|.. .......+..+...|+|||+..|..+
T Consensus 253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 332 336799999986552 2221 11114788999999999987766543
No 322
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.53 E-value=8.5 Score=35.98 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=34.3
Q ss_pred HHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH
Q 012235 306 LISDILA--IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA 358 (467)
Q Consensus 306 ~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~ 358 (467)
++..++. ..+++ .|||.=||+|+.+.+..+.|-..+| +|+++...+.|.
T Consensus 180 l~~~lI~~~t~~gd--iVlDpF~GSGTT~~aa~~l~R~~ig--~E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKASTNPGD--IVLDPFAGSGTTAVAAEELGRRYIG--IEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS-TT---EEEETT-TTTHHHHHHHHTT-EEEE--EESSHHHHHHHH
T ss_pred HHHHHHHhhhccce--eeehhhhccChHHHHHHHcCCeEEE--EeCCHHHHHHhc
Confidence 4444443 34566 9999999999999999999999888 666677666654
No 323
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.51 E-value=28 Score=35.26 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=55.7
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
..+.+++ +||=.|+| .|..+..+++. |.. +++ ++.++...+.+.+.+...++......+ . .....+|
T Consensus 162 ~~~~~g~--~vlI~g~g~iG~~~~~lak~~G~~~v~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGD--TVAVFGIGPVGLMAVAGARLRGAGRIIA--VGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 3455565 77777765 34555556655 774 666 444455566666655322222111111 1 1234689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+....- ...+.++.+.|+++|.++....
T Consensus 238 ~vld~~g~---------~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 238 AVIIAGGG---------QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred EEEECCCC---------HHHHHHHHHHhhcCCEEEEecc
Confidence 88854332 2467889999999999886543
No 324
>PLN02740 Alcohol dehydrogenase-like
Probab=72.44 E-value=27 Score=36.14 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=57.2
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCC--CC-----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQ--RL-----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~--~L-----pf~d~sF 380 (467)
..+.+++ +||=+|+|. |..+..+++. |. .|++ ++.++..++.+.+.|.-.++..... .+ ....+.+
T Consensus 194 ~~~~~g~--~VlV~G~G~vG~~a~q~ak~~G~~~Vi~--~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 194 ANVQAGS--SVAIFGLGAVGLAVAEGARARGASKIIG--VDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCCcEEE--EcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 4466676 888888753 4455555554 77 5777 4555666777766664223321110 01 0112368
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~ 420 (467)
|+|+-...- ...+.+..+.+++| |.+++...
T Consensus 270 dvvid~~G~---------~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 270 DYSFECAGN---------VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CEEEECCCC---------hHHHHHHHHhhhcCCCEEEEEcc
Confidence 988865443 24677777889997 98877544
No 325
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.29 E-value=41 Score=34.16 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=51.0
Q ss_pred CCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc---------cCCCccce
Q 012235 315 PGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP---------FFDNTMDL 382 (467)
Q Consensus 315 ~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp---------f~d~sFDl 382 (467)
+++ +||=.|+| .|..+..+++. |. .|+++ +.++...+.+.+.+...++.......+ ...+.+|+
T Consensus 177 ~g~--~vlI~g~g~vG~~~~~lak~~G~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGD--TVVVQGAGPLGLYAVAAAKLAGARRVIVI--DGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcE
Confidence 454 66667754 23444445544 87 78774 445555555555453222221111110 12346899
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+....- ...+.+..+.|+++|.++...
T Consensus 253 vid~~g~---------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 253 VIEASGH---------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEECCCC---------hHHHHHHHHHhccCCEEEEEc
Confidence 8864322 135778889999999998653
No 326
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=71.86 E-value=9.5 Score=40.44 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=28.4
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHH
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEM 356 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~ 356 (467)
+..|.|+|.|.|+++..|.-. |..|++ +|-+....+.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~a--Iegsq~~~~r 191 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKA--IEGSQRLVER 191 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEE--eccchHHHHH
Confidence 448999999999999999865 888999 5555544333
No 327
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.57 E-value=30 Score=35.01 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=54.3
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCC---C--ccCCCccc-e
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQR---L--PFFDNTMD-L 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~---L--pf~d~sFD-l 382 (467)
...+++ +||=.|+|. |..+..+++. |.. |++ ++.++...+.+.+.+...++...... + ......+| +
T Consensus 157 ~~~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~v~~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGK--NVIIIGAGTIGLLAIQCAVALGAKSVTA--IDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 445565 777778753 4455555554 776 566 45566666666555532222211111 0 01223577 5
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|+-.-.- ...+.+..+.|++||.+++....
T Consensus 233 v~d~~G~---------~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 233 ILETAGV---------PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred EEECCCC---------HHHHHHHHHHhhcCCEEEEEccC
Confidence 5533222 25788889999999999886543
No 328
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.71 E-value=34 Score=34.85 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=55.8
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC---CCCc------cCCCc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN---QRLP------FFDNT 379 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~---~~Lp------f~d~s 379 (467)
..+.+++ +||=+|+|. |..+..+++. |..|+. ++.++..++.+.+.|...++.... ..+. .....
T Consensus 162 ~~~~~g~--~VlV~G~G~vG~~a~~~a~~~G~~vi~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 162 AGLKKGD--LVIVIGAGGVGGYMVQTAKAMGAAVVA--IDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEE--EcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCC
Confidence 3455666 889999864 5666666655 788777 555666677776665322221110 0110 11123
Q ss_pred cc----eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 380 MD----LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 380 FD----lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+| +|+-...- ...+....++|++||.+++....
T Consensus 238 ~d~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 238 LRSTGWKIFECSGS---------KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCcCEEEECCCC---------hHHHHHHHHHHhcCCeEEEECcC
Confidence 44 44422211 24677778899999999886543
No 329
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=70.45 E-value=8.3 Score=41.93 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhcHHHHHHHHHHHHhhhhhhhhhheeeecccccc
Q 012235 68 LSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIRPLYSAHIALRQIRLPKAE 137 (467)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (467)
-++.+++-.++++++|.|++ +-||++.+++++-+-..||+||--.+ +...-+-||..+
T Consensus 58 ~~~e~~ec~~kL~~l~~~i~----ecekk~~~~~~sqs~pvfkR~lnklL--------~e~~klglPde~ 115 (549)
T PF05934_consen 58 CAEELSECYKKLDSLQKKID----ECEKKKREDQESQSNPVFKRYLNKLL--------IEAGKLGLPDEN 115 (549)
T ss_pred chHHHHHHHHHHHHHHHHHH----HHHHHHhhhcccccHHHHHHHHHHHH--------HHHhhcCCCCCc
Confidence 57888899999999999998 78887777888889999999999885 445556666554
No 330
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.53 E-value=33 Score=34.57 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=51.8
Q ss_pred CCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVis 385 (467)
.+++ +||-.|+|. |..+..+++. |. .++.+ +-++.....+.+.+...++......+. ...+.+|+|+.
T Consensus 162 ~~g~--~vlV~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGK--SVLITGCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 3444 666667643 4555556655 77 57664 445555555555443222211111110 12356899986
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...- ...+.++.+.|+++|.++...
T Consensus 238 ~~g~---------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 238 MSGN---------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCC---------HHHHHHHHHHhccCCEEEEEc
Confidence 4322 246778889999999987653
No 331
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=69.25 E-value=6.3 Score=40.44 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=59.2
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHH-------HH---cCCccEEEccCCCCc--cCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMI-------AL---RGLIPLYVTLNQRLP--FFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a-------~~---rg~i~~~~~d~~~Lp--f~d~sFDlV 383 (467)
.++||=||.|-|.+.+....+. -.+.-.++| ...++.. +- ...+.++.+|...+- ...++||+|
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD--~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEID--ENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhh--HHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4589999999999988887761 122222233 2222211 11 123677788754432 347899999
Q ss_pred Eeccccccccchh--hHHHHHHHHHhccCCCcEEEEE
Q 012235 384 HTTGFMDGWLDML--LLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 384 is~~~L~h~~~~~--~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+....= ...+-+ -.+..+..+.+.||+||+++..
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 964332 111111 1246788899999999998874
No 332
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=68.95 E-value=13 Score=38.30 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=49.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCc-----
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLP----- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lp----- 374 (467)
+.+.+...++. ..+|.=-|.|+.+..+.+. +..++| +|..+.+++.+.++ +.+.+++++..++.
T Consensus 12 vl~~L~~~~~g--~~vD~T~G~GGHS~aiL~~~~~~~li~--~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 12 VLEALNPKPGG--IYVDCTFGGGGHSKAILEKLPNGRLIG--IDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHT--TT---EEEETT-TTSHHHHHHHHT-TT-EEEE--EES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHhhCcCCCc--eEEeecCCcHHHHHHHHHhCCCCeEEE--ecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 44566666666 8999999999999999987 567777 55557788777754 34778888766654
Q ss_pred c-CCCccceEEecc
Q 012235 375 F-FDNTMDLIHTTG 387 (467)
Q Consensus 375 f-~d~sFDlVis~~ 387 (467)
. ....+|.|+...
T Consensus 88 ~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 88 LNGINKVDGILFDL 101 (310)
T ss_dssp TTTTS-EEEEEEE-
T ss_pred ccCCCccCEEEEcc
Confidence 2 335788888653
No 333
>PTZ00357 methyltransferase; Provisional
Probab=68.89 E-value=12 Score=42.51 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=58.5
Q ss_pred eEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHH--H---HcC----------CccEEEccCCCCccCC---
Q 012235 320 IGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMI--A---LRG----------LIPLYVTLNQRLPFFD--- 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a--~---~rg----------~i~~~~~d~~~Lpf~d--- 377 (467)
+|+=+|+|-|-+.....+. |..+.-+.++-++++.... . ... .+.++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999665544332 5444444455443322111 1 111 2688889988874321
Q ss_pred --------CccceEEeccccccccchhhHHHHHHHHHhccCC----CcE
Q 012235 378 --------NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRP----GGL 414 (467)
Q Consensus 378 --------~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKP----GG~ 414 (467)
+.+|+|+|-..- .+.+++...+.|..+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLG-SFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLG-SLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhc-ccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999985433 455665556889999999887 775
No 334
>PLN02827 Alcohol dehydrogenase-like
Probab=68.84 E-value=32 Score=35.73 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=55.1
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||=.|+|. |.++..+++. |.. |++ ++.++...+.+.+.|.-.++.... ..+. ...+.+
T Consensus 189 ~~~~~g~--~VlV~G~G~vG~~~iqlak~~G~~~vi~--~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGS--SVVIFGLGTVGLSVAQGAKLRGASQIIG--VDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 3456666 888888653 4455555544 764 666 555566667776666422221110 0110 112368
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 265 d~vid~~G~---------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFECVGD---------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEECCCC---------hHHHHHHHHhhccCCCEEEEEC
Confidence 888864432 24677888899999 9997743
No 335
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.55 E-value=29 Score=39.07 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=42.9
Q ss_pred EEEccCCC-CccCCCccceEEecc-cc----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 365 LYVTLNQR-LPFFDNTMDLIHTTG-FM----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 365 ~~~~d~~~-Lpf~d~sFDlVis~~-~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
++.+|+.. ++-....+|+++... +. +.|. +.++.++.|.++|||.|.- |... ..+...+...|
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~-----~~~~~~l~~~~~~~~~~~t--~t~a----~~vr~~l~~~G 219 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPAKNPDMWS-----PNLFNALARLARPGATLAT--FTSA----GFVRRGLQEAG 219 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCccChhhcc-----HHHHHHHHHHhCCCCEEEE--eehH----HHHHHHHHHcC
Confidence 44566433 222235689999753 22 1233 4699999999999998765 3221 26778888899
Q ss_pred ceee
Q 012235 439 YKKH 442 (467)
Q Consensus 439 f~~l 442 (467)
|+.-
T Consensus 220 F~v~ 223 (662)
T PRK01747 220 FTVR 223 (662)
T ss_pred Ceee
Confidence 9654
No 336
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.25 E-value=56 Score=32.47 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
....+.+++ +||=.|+|. |..+..+++. |..++.+ +.+....+.+.+.+. ...... ... ..+.+|+++..
T Consensus 161 ~~~~~~~~~--~vlV~g~g~vg~~~~~la~~~g~~v~~~--~~~~~~~~~~~~~g~-~~~~~~-~~~--~~~~vD~vi~~ 232 (329)
T cd08298 161 KLAGLKPGQ--RLGLYGFGASAHLALQIARYQGAEVFAF--TRSGEHQELARELGA-DWAGDS-DDL--PPEPLDAAIIF 232 (329)
T ss_pred HhhCCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEE--cCChHHHHHHHHhCC-cEEecc-Ccc--CCCcccEEEEc
Confidence 344455665 566676652 2333334433 8888774 444455566655452 222211 111 24568887753
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
... ...+.++.+.|+++|.+++..
T Consensus 233 ~~~---------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 233 APV---------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred CCc---------HHHHHHHHHHhhcCCEEEEEc
Confidence 222 247888999999999998754
No 337
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.88 E-value=52 Score=32.63 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=54.3
Q ss_pred HhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecc
Q 012235 310 ILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
...+.+++ +||=.|+| .|..+..+++. |..++. ++.++...+.+++.+. ...... ... ...+.+|+|+...
T Consensus 150 ~~~~~~g~--~vlV~g~g~vg~~~~q~a~~~G~~vi~--~~~~~~~~~~~~~~g~-~~~~~~-~~~-~~~~~~d~vid~~ 222 (319)
T cd08242 150 QVPITPGD--KVAVLGDGKLGLLIAQVLALTGPDVVL--VGRHSEKLALARRLGV-ETVLPD-EAE-SEGGGFDVVVEAT 222 (319)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEE--EcCCHHHHHHHHHcCC-cEEeCc-ccc-ccCCCCCEEEECC
Confidence 34455665 77777753 22333333433 888777 4555666777766553 222111 111 2345699988653
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.- ...+....+.|+++|.++...
T Consensus 223 g~---------~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 GS---------PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred CC---------hHHHHHHHHHhhcCCEEEEEc
Confidence 21 246778888999999988743
No 338
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.49 E-value=50 Score=34.49 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=66.0
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-Cc---------cC
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LP---------FF 376 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lp---------f~ 376 (467)
....+.|+ +||=+|+|+ |..+...++. | .+|+. .|.++..++.|++-|.-.+....... .. +.
T Consensus 164 ~~~vk~Gs--~vLV~GAGPIGl~t~l~Aka~GA~~VVi--~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 164 RAGVKKGS--KVLVLGAGPIGLLTGLVAKAMGASDVVI--TDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred hcCcccCC--eEEEECCcHHHHHHHHHHHHcCCCcEEE--eecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhcc
Confidence 34567777 999999997 5555555544 4 46777 67778889999886642222211111 10 22
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
...+|+.+....+ +..++-....+|+||.+++..+..+
T Consensus 240 ~~~~d~~~dCsG~---------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA---------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccCCCeEEEccCc---------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 3458888877766 3567777889999999888765443
No 339
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=67.36 E-value=8.8 Score=41.40 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=30.0
Q ss_pred CceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL 359 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~ 359 (467)
.-.|||||.|||.++...+..|.. |++ ++.-.+|...+++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA--~EvfkPM~d~ark 107 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTA--CEVFKPMVDLARK 107 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEe--ehhhchHHHHHHH
Confidence 346899999999999877777654 555 7766778777654
No 340
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=66.89 E-value=49 Score=33.47 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=55.8
Q ss_pred HhcCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sF 380 (467)
...+.+++ +||=.|+| .|..+..+++. |. .|+. .+.+....+.+.+.+.-.++.....++ . ...+.+
T Consensus 167 ~~~~~~g~--~vlI~g~g~vG~~a~q~a~~~G~~~v~~--~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 167 RSGFKPGD--TALVLGAGPIGLLTILALKAAGASKIIV--SEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCC
Confidence 34455565 66666753 34455555554 77 6777 445555566665545322221111111 0 122458
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|+|+-...- ...+.++.+.|+++|.++.....
T Consensus 243 d~vid~~g~---------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 243 DVSFDCAGV---------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CEEEECCCC---------HHHHHHHHHhccCCCEEEEEccC
Confidence 999865432 24678889999999998876543
No 341
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=66.80 E-value=44 Score=33.68 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccceEE
Q 012235 314 KPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDLIH 384 (467)
Q Consensus 314 ~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDlVi 384 (467)
.+++ +||-.|+| .|..+..+++. |.. |+.+ +.++...+.+.+.+...++......+ ....+.+|+|+
T Consensus 160 ~~g~--~vlI~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGK--SVLVTGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 4444 55556654 34555556554 776 6664 55555566555555322221111111 01235689998
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
....- ...+.++.+.|+++|.++....
T Consensus 236 d~~g~---------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 236 EMSGA---------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ECCCC---------HHHHHHHHHhhcCCCEEEEEcc
Confidence 75322 2467888999999999877543
No 342
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=66.61 E-value=52 Score=33.90 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=57.3
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CC----C-ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QR----L-PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~----L-pf~d~sF 380 (467)
..+.+++ +||=.|+|. |..+..+++. |. .|++ ++.++..++.+.+.|...++.... .. + ....+.+
T Consensus 181 ~~~~~g~--~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~--~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 181 AKVEEGD--TVAVFGLGGIGLSVIQGARMAKASRIIA--IDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCC
Confidence 4456666 788888753 4566666654 77 6877 555666677776666422221110 00 0 0112358
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~ 420 (467)
|+|+-.-.- ...+.+..+.+++| |.+++...
T Consensus 257 d~vid~~G~---------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 257 DYSFECIGN---------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CEEEECCCC---------HHHHHHHHHHhhcCCCeEEEEec
Confidence 888754332 24677788899886 99887654
No 343
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=66.12 E-value=48 Score=33.98 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=54.6
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
..+.+++ +||=.|+|. |..+..+++. |. .+++ .+.++...+.+.+.+...++......+. ...+.+|+
T Consensus 182 ~~~~~g~--~vlI~g~g~vG~~~~~la~~~G~~~v~~--~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 182 LKPRPGS--SIAVFGAGAVGLAAVMAAKIAGCTTIIA--VDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcE
Confidence 3455565 777777653 4555556654 77 4666 4445555565555453222221111110 11346898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-...- ...+.++.+.|+++|.++...
T Consensus 258 vld~~g~---------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV---------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC---------cHHHHHHHHHhccCCEEEEeC
Confidence 8864322 146788899999999988754
No 344
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=65.87 E-value=61 Score=31.36 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=52.9
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ .||-.|| +.|..+..+++. |..++.+ +.+....+.+.+.+...++......+. .....+|+
T Consensus 136 ~~~~~~--~vli~g~~~~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 136 RLQPGE--TVLVLGAAGGVGLAAVQLAKALGARVIAA--ASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCCCC--EEEEEcCCchHHHHHHHHHHHhCCEEEEE--eCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEE
Confidence 445555 8898997 344555555554 8888874 444455555555553222222111110 12345888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++....- ..+..+.+.++++|.++...
T Consensus 212 v~~~~g~----------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 212 VYDPVGG----------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred EEECccH----------HHHHHHHHhhccCCEEEEEc
Confidence 8764322 24566778899999987654
No 345
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=65.82 E-value=44 Score=34.13 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=51.5
Q ss_pred CCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccceE
Q 012235 313 IKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDlV 383 (467)
+.+++ +||=.|+| .|..+..+++. |.. ++.+ +.+....+.+.+.+...++......+ ...+..+|+|
T Consensus 185 ~~~g~--~VlI~g~g~vG~~~~~lak~~G~~~vi~~--~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 185 VRPGE--TVAVIGVGGVGSSAIQLAKAFGASPIIAV--DVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 34554 56655654 34555555544 776 6663 34455555555444322222221111 0124569999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+....- ...+.++.+.|+++|.++...
T Consensus 261 ld~vg~---------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 261 VEALGK---------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEeCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 864322 126778889999999988653
No 346
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=65.45 E-value=42 Score=34.59 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCCccCCCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis~~~L 389 (467)
+.+++ +||=.|+| .|.++..+++. |..++.++.+.. ...+.+.+.|...++.. +...+.-..+.+|+|+-...-
T Consensus 181 ~~~g~--~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~-~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~ 257 (360)
T PLN02586 181 TEPGK--HLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN-KEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA 257 (360)
T ss_pred cCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc-hhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC
Confidence 34555 67778875 34565666655 888777543322 12233334443222211 101111011247888854332
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...+.+..+.|++||.++...
T Consensus 258 ---------~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 258 ---------VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ---------HHHHHHHHHHhcCCcEEEEeC
Confidence 246778889999999988754
No 347
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=65.06 E-value=35 Score=34.94 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=53.5
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
..+.+++ +||-.|+| .|..+..+++. |.. |+.+ +.++...+.+.+.+...++......+ . ...+.+|
T Consensus 178 ~~~~~g~--~vLI~g~g~vG~a~i~lak~~G~~~Vi~~--~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 178 ARVRPGD--TVAVIGCGGVGLNAIQGARIAGASRIIAV--DPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCC
Confidence 3445555 67777764 35555555554 775 7663 44444455554444322222111111 0 1245689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ...+.++.+.|+++|.++...
T Consensus 254 ~vld~~~~---------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 254 YAFEAVGR---------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEEcCCC---------hHHHHHHHHHhhcCCeEEEEe
Confidence 88854332 246788899999999987653
No 348
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=64.93 E-value=78 Score=31.51 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=54.4
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDl 382 (467)
..+.+++ +||=.|+| .|..+..+++. |..|+.+..+.+....+.+.+.+...+ ......+ ......+|+
T Consensus 160 ~~~~~g~--~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~ 236 (306)
T cd08258 160 SGIRPGD--TVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDGADV 236 (306)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCE
Confidence 3455554 55555542 34455555554 888776544444444455555553222 1111111 012346888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++....- ...+....+.|+++|.++.....
T Consensus 237 vld~~g~---------~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 237 VIECSGA---------VPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred EEECCCC---------hHHHHHHHHHhhcCCEEEEEccc
Confidence 8865322 24678889999999999876554
No 349
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.45 E-value=43 Score=36.21 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=70.0
Q ss_pred cHHHHHHhhCCCEEEEEecCCC-HHHHHHHH---HcCCccEEEccCCCCc----------cCCCccceEEeccccccccc
Q 012235 329 GTFAARMREQNVTIVSTALNLG-APFNEMIA---LRGLIPLYVTLNQRLP----------FFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 329 G~~a~~La~~g~~V~gvdiDiS-~~~l~~a~---~rg~i~~~~~d~~~Lp----------f~d~sFDlVis~~~L~h~~~ 394 (467)
|-+|.++.++|..|.-+..|.- +.+.++.+ +.-.++++..+...-| +..+.||+|+..-+=.|..+
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~id 197 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHID 197 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccccc
Confidence 3456666666777666666743 34444443 3333666665433333 23467899998766645554
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.+ +-.-+.++.++++|.=.|++.+-..-.+-.+....+-+.+|+..+
T Consensus 198 e~-Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 198 EE-LMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HH-HHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 43 556788899999999999998766655544444444455666554
No 350
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=63.56 E-value=93 Score=31.22 Aligned_cols=127 Identities=15% Similarity=0.072 Sum_probs=66.1
Q ss_pred ceEEEEC-CCcc------HHHHHHhhCCCEEEEEecCCC-HHHHHHH---HHcCCccEEEccCCCCc----------cCC
Q 012235 319 RIGLDFG-VGTG------TFAARMREQNVTIVSTALNLG-APFNEMI---ALRGLIPLYVTLNQRLP----------FFD 377 (467)
Q Consensus 319 r~VLDIG-CGtG------~~a~~La~~g~~V~gvdiDiS-~~~l~~a---~~rg~i~~~~~d~~~Lp----------f~d 377 (467)
+.++=+| .|.| .++..+++.|..|.-++.|.- ....+.. .++..++++......-| ...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~ 152 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA 152 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3555555 3455 344445555778877777752 2222222 22222554432211111 013
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccC------CCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILR------PGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLK------PGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+.||+|+....-... .+..+-.-+.++.++.. |.+.+++.+.....+.........+.++...+=+..
T Consensus 153 ~~~D~ViIDT~G~~~-~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQ-NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred CCCCEEEEeCCCCCc-chHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEc
Confidence 669988876654222 23223345666667777 899988877765444444444455556665554543
No 351
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=62.31 E-value=70 Score=32.81 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CC----C-ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QR----L-PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~----L-pf~d~sF 380 (467)
..+.+++ +||=+|+| .|..+..+++. |. .|++ ++.++...+.+.+.+.-.++.... .. + ....+.+
T Consensus 180 ~~~~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~Vi~--~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 180 AKVEPGS--TVAVFGLGAVGLSAIMGAKIAGASRIIG--VDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCC
Confidence 3456666 77777865 24455555554 77 5777 444555566665555322221111 00 0 0112468
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~ 420 (467)
|+|+-...- ...+.+..+.|+++ |.+++...
T Consensus 256 d~vid~~g~---------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 256 DYSFECTGN---------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CEEEECCCC---------hHHHHHHHHhcccCCCEEEEEcC
Confidence 988854332 24677888899886 99887654
No 352
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=62.07 E-value=63 Score=33.11 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=56.4
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCC-----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRL-----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~L-----pf~d~sF 380 (467)
..+.+++ +||=.|+| .|..+..+++. |. .|++ ++.++...+.+.+.|...++.... ..+ ....+.+
T Consensus 183 ~~~~~g~--~VlV~G~g~vG~~a~q~ak~~G~~~vi~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 183 AKVKKGS--TVAIFGLGAVGLAVAEGARIRGASRIIG--VDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCC
Confidence 4456666 77878764 23455555554 77 6777 555566677776666422222111 011 1123368
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEecc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRFF 421 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~ 421 (467)
|+|+-...- ...+....+.+++| |.+++....
T Consensus 259 d~vid~~G~---------~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 259 DYSFECTGN---------IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CEEEECCCC---------hHHHHHHHHHhhcCCCEEEEECcC
Confidence 888754322 24677788899996 998876543
No 353
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=61.85 E-value=82 Score=31.41 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=62.6
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHH---HHHHHc-----CCccEEEccCC-----CC---ccCCCcc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFN---EMIALR-----GLIPLYVTLNQ-----RL---PFFDNTM 380 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l---~~a~~r-----g~i~~~~~d~~-----~L---pf~d~sF 380 (467)
.+.|+.+|||.-+-+.++... +..++ ++|...... +.+.+. ....++..|.. .+ .|..+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~--EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVF--EVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEE--ECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 447999999999988888644 34444 477654221 122221 12345555543 11 1222333
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
-++++-.++ .+.+.+....++..+.+...||+.+++....
T Consensus 160 tl~i~EGvl-~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 160 TAWLWEGLL-MYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeeecchh-hcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 456666666 6777777889999999998899998886543
No 354
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=61.65 E-value=68 Score=32.92 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=56.4
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCC--CC-----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQ--RL-----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~--~L-----pf~d~sF 380 (467)
..+.+++ +||=+|+| .|..+..+++. |. .|++ ++.++..++.+.+.|...++..... .+ ...++.+
T Consensus 182 ~~~~~g~--~VlV~G~G~vG~~a~~~ak~~G~~~vi~--~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 182 AKVEPGS--TVAVFGLGAVGLAVIQGAKAAGASRIIG--IDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 4456666 77777864 34555555554 77 5777 4555566666665553222221110 01 0112368
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEecc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRFF 421 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~ 421 (467)
|+|+-...- ...+.+..+.|+++ |.+++....
T Consensus 258 d~vid~~g~---------~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 258 DYTFECIGN---------VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred cEEEECCCC---------hHHHHHHHHhhccCCCeEEEEccC
Confidence 988864332 24677888899997 998876543
No 355
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.24 E-value=29 Score=38.26 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=54.4
Q ss_pred eEEEECCCcc-HHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-----------------------Cc
Q 012235 320 IGLDFGVGTG-TFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-----------------------LP 374 (467)
Q Consensus 320 ~VLDIGCGtG-~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-----------------------Lp 374 (467)
+|+=+|+|.= ..+..++.. |..|+. +|.....++.+..-+. .++.-+... ++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v--~d~~~~rle~a~~lGa-~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRA--FDTRPEVKEQVQSMGA-EFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE--EeCCHHHHHHHHHcCC-eEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 8999999975 455545444 888887 5555666666666543 222222100 11
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
-.-..+|+|+..-.+..-..+ .-+.+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEE
Confidence 112569999877644221111 246788899999998865
No 356
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=60.68 E-value=57 Score=32.90 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=58.8
Q ss_pred EEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 321 GLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 321 VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
|-=||+|. +.++..|++.|++|+.+ |.++...+.+.+.+.... .+...+.-....-|+|+..-.- . ..
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g~~V~~~--dr~~~~~~~l~~~g~~~~--~s~~~~~~~~~~~dvIi~~vp~-----~-~~ 72 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRGHDCVGY--DHDQDAVKAMKEDRTTGV--ANLRELSQRLSAPRVVWVMVPH-----G-IV 72 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHcCCccc--CCHHHHHhhcCCCCEEEEEcCc-----h-HH
Confidence 44577775 35677777889999885 455555666655542211 1211111111235887765332 1 24
Q ss_pred HHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 399 DFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 399 ~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+.++.++...|++|- ++++.-.....+.....+.++..|..
T Consensus 73 ~~v~~~l~~~l~~g~-ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 73 DAVLEELAPTLEKGD-IVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHHHHHHHhhCCCCC-EEEECCCCCcccHHHHHHHHHhcCCe
Confidence 677888888898875 44543222222333444555555543
No 357
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=60.63 E-value=70 Score=32.46 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=58.0
Q ss_pred eEEEECCCcc-------HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc----
Q 012235 320 IGLDFGVGTG-------TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF---- 388 (467)
Q Consensus 320 ~VLDIGCGtG-------~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~---- 388 (467)
+||-+|+|+- ...+++...+..++..|++ . .+.. .-..+.+|...+.. +..||+|+|..-
T Consensus 64 rVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~--d----~vSD--a~~~~~~Dc~t~~~-~~k~DlIiSDmYd~~~ 134 (299)
T PF06460_consen 64 RVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIR--D----YVSD--ADQSIVGDCRTYMP-PDKFDLIISDMYDGRT 134 (299)
T ss_dssp EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--------B-S--SSEEEES-GGGEEE-SS-EEEEEE----TTS
T ss_pred EEEEecccccCCcCCchHHHHHhCCCCcEEEecchh--h----hccc--cCCceeccccccCC-CCcccEEEEecccccc
Confidence 8999999863 2333344346555554443 1 1100 12356777777654 678999999654
Q ss_pred ----cccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccCCCCceEEEEE
Q 012235 389 ----MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPKSKDEVYLSAL 459 (467)
Q Consensus 389 ----L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k~~devyl~av 459 (467)
.+....+.-..-+..-+..-|+=||.+.+-.- +..+. ++-+++..+.+-.+=-....-...|.|+..+
T Consensus 135 k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT---E~Sw~~~Lyel~~~F~~wt~FcT~VNtSSSEaFLigi 207 (299)
T PF06460_consen 135 KNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT---EHSWNAQLYELMGYFSWWTCFCTAVNTSSSEAFLIGI 207 (299)
T ss_dssp -SS-S------THHHHHHHHHHHHEEEEEEEEEEE----SSS--HHHHHHHTTEEEEEEEEEGGGTTSS-EEEEEE
T ss_pred cccccccCCccccHHHHHHHHHhhhhcCceEEEEee---cccccHHHHHHHhhcccEEEEecccCccccceeEEee
Confidence 10111111112344556678899999988332 22222 5556666654422211222235566666543
No 358
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.55 E-value=51 Score=35.37 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=52.7
Q ss_pred CCCCceEEEECCCc-cHHHHHHh-hCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccc
Q 012235 315 PGETRIGLDFGVGT-GTFAARMR-EQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 315 ~g~~r~VLDIGCGt-G~~a~~La-~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+++ +|+=+|+|. |.....++ ..|..|+.++.| +...+.+...|. ... +.... -...|+|+..-.-
T Consensus 201 ~Gk--tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d--~~R~~~A~~~G~-~~~--~~~e~---v~~aDVVI~atG~--- 267 (413)
T cd00401 201 AGK--VAVVAGYGDVGKGCAQSLRGQGARVIVTEVD--PICALQAAMEGY-EVM--TMEEA---VKEGDIFVTTTGN--- 267 (413)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEECC--hhhHHHHHhcCC-EEc--cHHHH---HcCCCEEEECCCC---
Confidence 455 899999996 44444333 448888886555 444555555553 211 11111 1357999865432
Q ss_pred cchhhHHHHHHH-HHhccCCCcEEEEEecc
Q 012235 393 LDMLLLDFILFD-WDRILRPGGLLWIDRFF 421 (467)
Q Consensus 393 ~~~~~l~~~L~e-l~RvLKPGG~LiI~~~~ 421 (467)
...+.. ..+.+|+||.++....+
T Consensus 268 ------~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 268 ------KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ------HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 244554 58899999999876543
No 359
>PRK11524 putative methyltransferase; Provisional
Probab=60.50 E-value=20 Score=36.01 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=40.1
Q ss_pred HHHHHHhcC--CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 305 FLISDILAI--KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 305 ~~I~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
.++..++.. .+|+ .|||-=||+|+.+.+..+.|-..+| +|++++..+.+.+|
T Consensus 196 ~L~erlI~~~S~~GD--~VLDPF~GSGTT~~AA~~lgR~~IG--~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 196 ALLKRIILASSNPGD--IVLDPFAGSFTTGAVAKASGRKFIG--IEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHhCCCCC--EEEECCCCCcHHHHHHHHcCCCEEE--EeCCHHHHHHHHHH
Confidence 345555543 4566 9999999999999988888999999 66667777777766
No 360
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.93 E-value=46 Score=33.16 Aligned_cols=81 Identities=20% Similarity=0.071 Sum_probs=50.7
Q ss_pred EEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 321 GLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 321 VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
|.=||+|. |.++..|.+.|..|++++ .++...+.+...+.+.....+.+ .-...|+|+..-... ..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d--~~~~~~~~a~~~g~~~~~~~~~~----~~~~aDlVilavp~~------~~ 70 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVS--RRESTCERAIERGLVDEASTDLS----LLKDCDLVILALPIG------LL 70 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHCCCcccccCCHh----HhcCCCEEEEcCCHH------HH
Confidence 45578875 578888888899999954 55666777776664332222211 124568888765431 13
Q ss_pred HHHHHHHHhccCCCc
Q 012235 399 DFILFDWDRILRPGG 413 (467)
Q Consensus 399 ~~~L~el~RvLKPGG 413 (467)
..++.++...++|+-
T Consensus 71 ~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 71 LPPSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHHHhCCCCc
Confidence 456778888887764
No 361
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=59.91 E-value=54 Score=33.23 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=58.9
Q ss_pred eEEEECCC--ccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVG--TGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCG--tG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|+=+|.| -|.++..+.+.|..+..++.|.+...++.+.+.+.+.-...+.. -......|+|+.+-.+. .
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~--~~~~~~aD~VivavPi~------~ 76 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGL--AEAAAEADLVIVAVPIE------A 76 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchh--hhhcccCCEEEEeccHH------H
Confidence 66777877 36888888888988877778888887887777775332211110 11235579988765552 2
Q ss_pred HHHHHHHHHhccCCCcE
Q 012235 398 LDFILFDWDRILRPGGL 414 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~ 414 (467)
...++.++...|++|..
T Consensus 77 ~~~~l~~l~~~l~~g~i 93 (279)
T COG0287 77 TEEVLKELAPHLKKGAI 93 (279)
T ss_pred HHHHHHHhcccCCCCCE
Confidence 35788888888888864
No 362
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=57.71 E-value=1.1e+02 Score=29.46 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=54.3
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
..+.+++ +||=.|+ +.|..+..+++. |..++.+ +.+....+.+.+.+.-.++......+ . .....+|
T Consensus 132 ~~~~~g~--~vlI~g~~g~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (320)
T cd05286 132 YPVKPGD--TVLVHAAAGGVGLLLTQWAKALGATVIGT--VSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVD 207 (320)
T ss_pred cCCCCCC--EEEEEcCCchHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCee
Confidence 3455565 7787774 455666666655 8888874 44555566665555322222211111 0 1234689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+....- ..+.+..+.|+++|.++..
T Consensus 208 ~vl~~~~~----------~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 208 VVYDGVGK----------DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EEEECCCc----------HhHHHHHHhhccCcEEEEE
Confidence 88864321 2566778899999998864
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=57.65 E-value=1.2e+02 Score=32.66 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=58.9
Q ss_pred eEEEEC-CCcc--H----HHHHHhhC-CCEEEEEecCCCHH-HHHHH---HHcCCccEEEccCCCCc----------cCC
Q 012235 320 IGLDFG-VGTG--T----FAARMREQ-NVTIVSTALNLGAP-FNEMI---ALRGLIPLYVTLNQRLP----------FFD 377 (467)
Q Consensus 320 ~VLDIG-CGtG--~----~a~~La~~-g~~V~gvdiDiS~~-~l~~a---~~rg~i~~~~~d~~~Lp----------f~d 377 (467)
.|+=+| .|+| + ++.++++. |..|.-++.|.-.+ +.++. .++..++++......-| ...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~ 181 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE 181 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh
Confidence 566666 4555 3 45555666 78787777874332 33333 23333565543211111 123
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..||+|+...+-.+..+. .+-..+..+.++++|.+.+++.+...
T Consensus 182 ~~~DvVIIDTaGrl~~d~-~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDE-ELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred cCCCEEEEeCCCCcccCH-HHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 569999987665333333 24466788888999999988877543
No 364
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=57.57 E-value=1e+02 Score=30.83 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=53.1
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
+.+.+++ +||=.|+| .|..+..+++. |.. ++. ...+....+.+...+...++......+ . .....+|
T Consensus 161 ~~~~~g~--~VlV~g~g~vg~~~~~la~~~g~~~v~~--~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd 236 (343)
T cd08235 161 AGIKPGD--TVLVIGAGPIGLLHAMLAKASGARKVIV--SDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGAD 236 (343)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCC
Confidence 3555665 66666764 45555555554 777 665 444455555554444312221111111 0 1234589
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ...+.++.+.|+++|.++...
T Consensus 237 ~vld~~~~---------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 237 VVIVATGS---------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred EEEECCCC---------hHHHHHHHHHhhcCCEEEEEe
Confidence 98864332 246777889999999988754
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=57.22 E-value=1.8e+02 Score=31.35 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred eEEEEC-CCcc------HHHHHHh-hCCCEEEEEecCCCHH-HHHHH---HHcCCccEEEccCCCCc----------cCC
Q 012235 320 IGLDFG-VGTG------TFAARMR-EQNVTIVSTALNLGAP-FNEMI---ALRGLIPLYVTLNQRLP----------FFD 377 (467)
Q Consensus 320 ~VLDIG-CGtG------~~a~~La-~~g~~V~gvdiDiS~~-~l~~a---~~rg~i~~~~~d~~~Lp----------f~d 377 (467)
.++=+| .|.| .++..+. +.|..|.-++.|.-.+ +.++. ..+-.++++.......| ...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~ 180 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE 180 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh
Confidence 555565 4566 2344544 3577787777885433 23322 22223555543322222 124
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH-HHcCceeeEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF-LQFRYKKHKWA 445 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i-~~~Gf~~l~W~ 445 (467)
+.+|+|+...+-.+..+. .+-..+.++.++++|.+++++.+.....+.. .....+ +.++...+=|+
T Consensus 181 ~~~DvVIIDTaGr~~~d~-~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~-~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDE-ELMEELAAIKEILNPDEILLVVDAMTGQDAV-NTAKTFNERLGLTGVVLT 247 (428)
T ss_pred cCCCEEEEeCCCccccCH-HHHHHHHHHHHhhCCceEEEEEeccchHHHH-HHHHHHHhhCCCCEEEEe
Confidence 568998876655333333 2456677888899999998887754332222 333333 35566555454
No 366
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=57.17 E-value=1e+02 Score=31.15 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=50.0
Q ss_pred eEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceEEecccccc
Q 012235 320 IGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlVis~~~L~h 391 (467)
+||-.|+| .|..+..+++. |. .|+.+ +.+....+.+.+.+...++......+ ....+.+|+|+....-
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~-- 253 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALGPANIIVV--DIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN-- 253 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCC--
Confidence 77777764 24444555544 77 56663 44555556665555322222111111 0112268888865432
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...+.+..+.|+++|.++...
T Consensus 254 -------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 254 -------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred -------HHHHHHHHHHhhcCCeEEEEC
Confidence 246888999999999988643
No 367
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=57.07 E-value=38 Score=33.55 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHhhCC--CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhc
Q 012235 331 FAARMREQN--VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRI 408 (467)
Q Consensus 331 ~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~Rv 408 (467)
++..|.+.| +.|++ .|.++...+.+.+.|.+.-...+.+.+ ..+|+|+..-.+. ....++.++...
T Consensus 1 ~A~aL~~~g~~~~v~g--~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~~------~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYG--YDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPVS------AIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEE--E-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-HH------HHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEE--EeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCHH------HHHHHHHHhhhh
Confidence 467888887 67777 667778888888888765544432221 3469998766552 245788888888
Q ss_pred cCCCcE
Q 012235 409 LRPGGL 414 (467)
Q Consensus 409 LKPGG~ 414 (467)
+++|+.
T Consensus 69 ~~~~~i 74 (258)
T PF02153_consen 69 LKPGAI 74 (258)
T ss_dssp S-TTSE
T ss_pred cCCCcE
Confidence 888764
No 368
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=56.94 E-value=99 Score=30.10 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=55.0
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceE
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlV 383 (467)
.+.+++ +||=.|+ +.|..+..+++. |..|+.+ ..++...+.+.+.+. ..+......+ .. .+.+|+|
T Consensus 139 ~~~~g~--~vlV~ga~g~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~i~~~-~~~~d~v 212 (320)
T cd08243 139 GLQPGD--TLLIRGGTSSVGLAALKLAKALGATVTAT--TRSPERAALLKELGA-DEVVIDDGAIAEQLRAA-PGGFDKV 212 (320)
T ss_pred CCCCCC--EEEEEcCCChHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHhcCC-cEEEecCccHHHHHHHh-CCCceEE
Confidence 355555 7777775 456677777765 8888774 444555566655553 2222111111 12 4568988
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+....- ..+.+..+.|+++|.++...
T Consensus 213 l~~~~~----------~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 213 LELVGT----------ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EECCCh----------HHHHHHHHHhccCCEEEEEc
Confidence 854321 35778889999999987653
No 369
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=56.88 E-value=70 Score=32.14 Aligned_cols=90 Identities=16% Similarity=0.058 Sum_probs=52.3
Q ss_pred eEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccceEEeccccc
Q 012235 320 IGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDlVis~~~L~ 390 (467)
+||-.|+|. |..+..+++. |. .++.+ +.++...+.+.+.|.-.++......+ -...+.+|+|+....-
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~- 242 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGA- 242 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCC-
Confidence 566667653 5565666654 77 46663 55565666666655322221111111 0123568988864322
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...+.++.+.|+++|.++....
T Consensus 243 --------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 243 --------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred --------HHHHHHHHHHHhcCCEEEEEec
Confidence 2467888999999999988654
No 370
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=56.82 E-value=90 Score=30.74 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=53.6
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||=.|+ +.|..+..+++. |..++.+ ..+....+.+++.+.-.++......+. .....+|
T Consensus 135 ~~~~~g~--~vlI~g~~g~ig~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d 210 (324)
T cd08292 135 LGVKPGQ--WLIQNAAGGAVGKLVAMLAAARGINVINL--VRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPIS 210 (324)
T ss_pred hCCCCCC--EEEEcccccHHHHHHHHHHHHCCCeEEEE--ecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCc
Confidence 4456665 7777765 356666667665 8887763 233334444444443222222111111 1234689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ..+.+..+.|+++|.++...
T Consensus 211 ~v~d~~g~----------~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 211 VALDSVGG----------KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred EEEECCCC----------hhHHHHHHhhcCCcEEEEEe
Confidence 99854332 24567889999999988653
No 371
>PHA01634 hypothetical protein
Probab=56.58 E-value=21 Score=32.55 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=28.7
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL 359 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~ 359 (467)
+|+|||++-|.-+..++-+|. .|++ +..++...+...+
T Consensus 31 tV~dIGA~iGdSaiYF~l~GAK~Vva--~E~~~kl~k~~ee 69 (156)
T PHA01634 31 TIQIVGADCGSSALYFLLRGASFVVQ--YEKEEKLRKKWEE 69 (156)
T ss_pred EEEEecCCccchhhHHhhcCccEEEE--eccCHHHHHHHHH
Confidence 899999999999999998875 4777 4445555554443
No 372
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=55.89 E-value=92 Score=31.58 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=59.0
Q ss_pred eEEEECCCccHHHHHHhh----CCCEEEEEecCCCHHHHHHHHH----c--CC-ccEEEccC----CCCccCCCccc-eE
Q 012235 320 IGLDFGVGTGTFAARMRE----QNVTIVSTALNLGAPFNEMIAL----R--GL-IPLYVTLN----QRLPFFDNTMD-LI 383 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~----~g~~V~gvdiDiS~~~l~~a~~----r--g~-i~~~~~d~----~~Lpf~d~sFD-lV 383 (467)
..+|+|.|+..=++.|.+ +|.-.--+-+|+++..++..++ . +. +.-+.++. ..+| ...-- ++
T Consensus 81 ~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl~~ 158 (321)
T COG4301 81 TLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRLFV 158 (321)
T ss_pred eEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEEEE
Confidence 789999999977766654 3544444457777766654332 1 21 33334442 2233 22222 23
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+-..++-++.+.+ -..++..+..+|+||-+|++..-
T Consensus 159 flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 159 FLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EecccccCCChHH-HHHHHHHHHhcCCCcceEEEecc
Confidence 3344554555443 46889999999999999998543
No 373
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.47 E-value=43 Score=34.52 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCcc---
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPF--- 375 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf--- 375 (467)
..+.|..+++. +.+|.--|.|+.+..+.++. ..+++ +|..+.+++.+.++ +.+.+++++...+..
T Consensus 15 ~i~~L~~~~~g--iyiD~TlG~GGHS~~iL~~l~~~~~li~--~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 15 VVELLAPKPDG--IYIDGTLGAGGHSRAILEKLPDLGRLIG--IDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHhcccCCCc--EEEEecCCCcHhHHHHHHhCCCCCeEEE--EcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHH
Confidence 34556677776 89999999999999999884 45777 56667777777653 357788887655532
Q ss_pred --CCCccceEEec
Q 012235 376 --FDNTMDLIHTT 386 (467)
Q Consensus 376 --~d~sFDlVis~ 386 (467)
..+.+|.|+..
T Consensus 91 ~~~i~~vDGiL~D 103 (314)
T COG0275 91 ELGIGKVDGILLD 103 (314)
T ss_pred hcCCCceeEEEEe
Confidence 23467777753
No 374
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=54.99 E-value=41 Score=33.64 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=52.2
Q ss_pred ccccccccCCc-------ChHH--HHHHHhcCCC----CCCceEEEECCCccHHHHHH--hhCCCEEEEEecCCCHHHHH
Q 012235 291 EKPKWVANRSV-------PVDF--LISDILAIKP----GETRIGLDFGVGTGTFAARM--REQNVTIVSTALNLGAPFNE 355 (467)
Q Consensus 291 e~~~W~~~~~~-------~~d~--~I~~lL~l~~----g~~r~VLDIGCGtG~~a~~L--a~~g~~V~gvdiDiS~~~l~ 355 (467)
.-++|..+.++ .+++ ++.++|.-.. +..-++||||.|.--+--.+ .+.|...+|+++| +..++
T Consensus 39 ~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid--~~sl~ 116 (292)
T COG3129 39 AVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEID--SQSLS 116 (292)
T ss_pred ceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccC--HHHHH
Confidence 44567765543 2333 4556664322 22236899999876433323 2348888886666 33333
Q ss_pred HHH----Hc-C---CccEEEc-cCCC----CccCCCccceEEeccccc
Q 012235 356 MIA----LR-G---LIPLYVT-LNQR----LPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 356 ~a~----~r-g---~i~~~~~-d~~~----Lpf~d~sFDlVis~~~L~ 390 (467)
.|+ .+ + .+.+... +... +--.++.||+++|+-.++
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 332 12 1 1443332 2111 112357899999999883
No 375
>PRK13699 putative methylase; Provisional
Probab=54.81 E-value=29 Score=33.89 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=37.0
Q ss_pred HHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 306 LISDILA--IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 306 ~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
.+..++. ..+|+ .|||-=||+|+.+.+..+.|...+| +++++...+.+.+|
T Consensus 152 l~~~~i~~~s~~g~--~vlDpf~Gsgtt~~aa~~~~r~~~g--~e~~~~y~~~~~~r 204 (227)
T PRK13699 152 SLQPLIESFTHPNA--IVLDPFAGSGSTCVAALQSGRRYIG--IELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHhCCCCC--EEEeCCCCCCHHHHHHHHcCCCEEE--EecCHHHHHHHHHH
Confidence 3444443 34566 8999999999999998888999999 55556666655543
No 376
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=53.72 E-value=99 Score=31.04 Aligned_cols=95 Identities=20% Similarity=0.159 Sum_probs=53.2
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc---cCCCccceEEec
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP---FFDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp---f~d~sFDlVis~ 386 (467)
.+.+++ +||=.|+| .|..+..+++. |..++.+ +.+...++.+.+.+.-.++......+. ...+.+|+|+..
T Consensus 160 ~~~~~~--~vlV~g~g~iG~~~~~~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 160 GAKPGD--LVAVQGIGGLGHLAVQYAAKMGFRTVAI--SRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEE--eCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 455565 77878853 23444445544 8888774 444555666655553222221111110 001347888854
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..- ...+.+..+.|+++|.++...
T Consensus 236 ~g~---------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 236 APN---------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CCc---------hHHHHHHHHHcccCCEEEEEe
Confidence 221 247788899999999988643
No 377
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=53.50 E-value=89 Score=32.81 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=57.6
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=.|+|. |..+..+++. |..++. ..|.++..++.+.+.|. ..+.... ..+. .....+|+
T Consensus 182 ~~~~g~--~VlV~G~G~iG~~aiqlAk~~Ga~~vi-~~d~~~~r~~~a~~~Ga-~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 182 GVGPGS--TVYIAGAGPVGLAAAASAQLLGAAVVI-VGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCceEE-EeCCCHHHHHHHHHcCC-eEEecCCcccHHHHHHHHcCCCCCcE
Confidence 455565 665577753 4455555554 776443 24556666777777664 2222111 1110 12346899
Q ss_pred EEecccccc--c---cchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDG--W---LDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h--~---~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|+-.-.-.. + .........+.+..+++++||.+++....
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 885443210 0 00001124788899999999999986554
No 378
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=53.49 E-value=1.3e+02 Score=28.98 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=50.0
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--ccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL--PFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L--pf~d~sFDlVis~~ 387 (467)
+.+++ +||=.|+ +.|..+..+++. |..++.++. +. ..+.+...+...++......+ ....+.+|+++...
T Consensus 142 ~~~~~--~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~ 216 (309)
T cd05289 142 LKAGQ--TVLIHGAAGGVGSFAVQLAKARGARVIATAS--AA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV 216 (309)
T ss_pred CCCCC--EEEEecCCchHHHHHHHHHHHcCCEEEEEec--ch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC
Confidence 45555 7777775 345555555544 888877543 22 344444444222222211111 12345688887543
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.- .......+.|+++|.++..
T Consensus 217 ~~----------~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 217 GG----------ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred ch----------HHHHHHHHHHhcCcEEEEE
Confidence 22 2567778899999998764
No 379
>PRK10458 DNA cytosine methylase; Provisional
Probab=53.47 E-value=3e+02 Score=30.08 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=36.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCC
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRL 373 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~L 373 (467)
+++|+=||.|.+...+...|.+++. ..|+.+.+.+....+. ....+.+|+..+
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~-a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i 146 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVF-TSEWNKHAVRTYKANWYCDPATHRFNEDIRDI 146 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEE-EEechHHHHHHHHHHcCCCCccceeccChhhC
Confidence 7899999999999999888887653 3666666666555442 123444555544
No 380
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=53.16 E-value=18 Score=36.96 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
.++.+|..+..+|+|||.+++.+|...++
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 46789999999999999999999877554
No 381
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=52.60 E-value=63 Score=31.49 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=60.9
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC----C--CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc------CCCc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ----N--VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF------FDNT 379 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~----g--~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf------~d~s 379 (467)
.++|. .|+++|.-.|.-+...+.. | ..|.++|+|+-+- ...+.+...+.++.++..+... ..+.
T Consensus 67 ~~~P~---lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~-~p~a~e~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 67 ELQPS---LVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPL-DPAAREVPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred hcCCc---eeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcC-ChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 45554 7999999888666555543 6 8899988887541 1222223447888887654321 1122
Q ss_pred cceEE-eccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIH-TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVi-s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+--|+ +-.+- |-.+. ....++-+.++|..|-++++.+
T Consensus 143 y~kIfvilDsd-Hs~~h--vLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 143 YPKIFVILDSD-HSMEH--VLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCcEEEEecCC-chHHH--HHHHHHHhhhHhhcCceEEEec
Confidence 22333 33333 33333 2466777889999999998854
No 382
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=51.42 E-value=1.3e+02 Score=30.06 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=50.2
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccce
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFDl 382 (467)
.+.+++ +||=.|+| .|..+..+++. | ..++. ++.++.....+.+.+...++......+ . .....+|+
T Consensus 163 ~~~~g~--~vlI~g~g~~g~~~~~~a~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 163 KVKPGD--TVAIVGAGPVGLAALLTAQLYSPSKIIM--VDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCE
Confidence 344554 55556653 22343444444 7 67777 444555555555545322222111111 0 12346899
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+....- ...+..+.+.|+++|.++..
T Consensus 239 vld~~g~---------~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VIEAVGI---------PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEECCCC---------HHHHHHHHHhccCCcEEEEe
Confidence 8854321 24678888999999998864
No 383
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=51.40 E-value=19 Score=37.11 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
.++.+|..+..+|+|||.+++.+|..-++.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLEDR 247 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLEDR 247 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 367889999999999999999998776543
No 384
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.10 E-value=1.3e+02 Score=30.14 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=53.3
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccce
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDl 382 (467)
..+.+++ +||=.|+ +.|..+..+++. |..++.++- +. ..+.+.+.+. ..+....... ......+|+
T Consensus 173 ~~~~~g~--~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~--~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08274 173 AGVGAGE--TVLVTGASGGVGSALVQLAKRRGAIVIAVAG--AA-KEEAVRALGA-DTVILRDAPLLADAKALGGEPVDV 246 (350)
T ss_pred cCCCCCC--EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC--ch-hhHHHHhcCC-eEEEeCCCccHHHHHhhCCCCCcE
Confidence 3455665 7888886 345565556654 888877542 22 4555554453 2222111110 112356899
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+....- ..+.++.+.|+++|.++..
T Consensus 247 vi~~~g~----------~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 247 VADVVGG----------PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred EEecCCH----------HHHHHHHHHhccCCEEEEe
Confidence 8854331 3567788999999998754
No 385
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=51.01 E-value=1.2e+02 Score=30.41 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=52.8
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc-----cCCCccceE
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP-----FFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp-----f~d~sFDlV 383 (467)
.+.+++ +||=.|+| .|..+..+++. |.+++.+ ..+.+..+.+.+.+...++.... ..+. ...+.+|+|
T Consensus 162 ~~~~~~--~vlV~g~g~vg~~~~~~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 162 RVKPGE--WVAVHGCGGVGLSAVMIASALGARVIAV--DIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 444555 67777753 33444445544 8888774 44455556665545322222211 1111 112268988
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+....- ...+.+..+.|+++|.++...
T Consensus 238 i~~~g~---------~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 238 VDALGI---------PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred EEcCCC---------HHHHHHHHHHhhcCCEEEEeC
Confidence 865321 246778899999999987643
No 386
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=50.06 E-value=1.1e+02 Score=32.43 Aligned_cols=109 Identities=9% Similarity=0.013 Sum_probs=61.3
Q ss_pred hHHHHHHHh-cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH-HcCCc-c-EEEccCCCCccCCC
Q 012235 303 VDFLISDIL-AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-LRGLI-P-LYVTLNQRLPFFDN 378 (467)
Q Consensus 303 ~d~~I~~lL-~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~-~rg~i-~-~~~~d~~~Lpf~d~ 378 (467)
+|.|+.+.+ ...... .||=+|=..|.++..++..+...+ .|.-++..+...-. ..+.. . +..-+.. +-.++
T Consensus 31 ade~ll~~~~~~~~~~--~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~~~~~ 105 (378)
T PRK15001 31 ADEYLLQQLDDTEIRG--PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDST--ADYPQ 105 (378)
T ss_pred HHHHHHHHHhhcccCC--CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeeccc--ccccC
Confidence 455544443 322222 689999999999999997666433 22223333333322 33321 1 1111111 11245
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.+|+|+.-..- ....++..+..+.++|.||+.+++..-
T Consensus 106 ~~d~vl~~~PK----~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 106 QPGVVLIKVPK----TLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred CCCEEEEEeCC----CHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 58988864432 122356788999999999999876443
No 387
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=49.70 E-value=34 Score=30.47 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=43.2
Q ss_pred ccEEEccCCC-CccCCCccceEEecc-cc----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 363 IPLYVTLNQR-LPFFDNTMDLIHTTG-FM----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 363 i~~~~~d~~~-Lpf~d~sFDlVis~~-~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
+.+..+|+.. ++--+..||+|+-.. +. +.|. ..++.++.|+++|||.+.- +... ..+...+..
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs-----~e~~~~l~~~~~~~~~l~T--ys~a----~~Vr~~L~~ 101 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWS-----EELFKKLARLSKPGGTLAT--YSSA----GAVRRALQQ 101 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSS-----HHHHHHHHHHEEEEEEEEE--S--B----HHHHHHHHH
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCC-----HHHHHHHHHHhCCCcEEEE--eech----HHHHHHHHH
Confidence 3455666543 332247888888653 22 2333 4699999999999997654 3332 268889999
Q ss_pred cCceeeEE
Q 012235 437 FRYKKHKW 444 (467)
Q Consensus 437 ~Gf~~l~W 444 (467)
.||..-+-
T Consensus 102 aGF~v~~~ 109 (124)
T PF05430_consen 102 AGFEVEKV 109 (124)
T ss_dssp CTEEEEEE
T ss_pred cCCEEEEc
Confidence 99986543
No 388
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=49.60 E-value=1.2e+02 Score=30.20 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=54.7
Q ss_pred cCCCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC----c--cCCCccce
Q 012235 312 AIKPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL----P--FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L----p--f~d~sFDl 382 (467)
.+.+++ +||=.|+| .|..+..+++. |.+++.+. .+....+.+.+-+.-.++......+ . ...+.+|+
T Consensus 162 ~~~~~~--~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~ 237 (341)
T cd08297 162 GLKPGD--WVVISGAGGGLGHLGVQYAKAMGLRVIAID--VGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHA 237 (341)
T ss_pred CCCCCC--EEEEECCCchHHHHHHHHHHHCCCeEEEEe--CCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCE
Confidence 455565 77777765 56666667665 88887743 3344445554444211221111111 0 12356898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+....- ...+.+..+.|+++|.++...
T Consensus 238 vl~~~~~---------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 238 VVVTAVS---------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EEEcCCc---------hHHHHHHHHHhhcCCEEEEec
Confidence 8853322 246778889999999998753
No 389
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=49.01 E-value=1.1e+02 Score=31.09 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=60.8
Q ss_pred HHHHHhcCCCCCCceEE--EECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----c-C
Q 012235 306 LISDILAIKPGETRIGL--DFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----F-F 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VL--DIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f-~ 376 (467)
.+.+....++|. .|| -...|.|...-.|.+. |.+++++. .+.+..+.+.+.|.-..+....+++- + .
T Consensus 137 ll~e~y~vkpGh--tVlvhaAAGGVGlll~Ql~ra~~a~tI~~a--sTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 137 LLFEAYNVKPGH--TVLVHAAAGGVGLLLCQLLRAVGAHTIATA--STAEKHEIAKENGAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHHhcCCCCCC--EEEEEeccccHHHHHHHHHHhcCcEEEEEe--ccHHHHHHHHhcCCcceeeccchhHHHHHHhccC
Confidence 355556788887 444 3456778777777655 77777743 34556677777775333333323221 2 2
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
....|++.-+-.- ..+..-...|||+|+++-
T Consensus 213 gKGVd~vyDsvG~----------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 213 GKGVDAVYDSVGK----------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred CCCceeeeccccc----------hhhHHHHHHhccCceEEE
Confidence 4567877755444 467777889999999865
No 390
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=48.97 E-value=2.1e+02 Score=27.87 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=51.8
Q ss_pred HhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sF 380 (467)
...+.+++ +||=.|+| .|..+..+++. |.. ++.+ ..+....+.+.+-+...++......+. .....+
T Consensus 124 ~~~~~~~~--~vlI~g~g~vg~~~~~la~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v 199 (312)
T cd08269 124 RGWIRAGK--TVAVIGAGFIGLLFLQLAAAAGARRVIAI--DRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGA 199 (312)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCC
Confidence 33455555 56655642 34444445544 777 7764 333444444444443222221111110 123468
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+++....- ...+.+..+.|+++|.++...
T Consensus 200 d~vld~~g~---------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 200 DVVIEAVGH---------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CEEEECCCC---------HHHHHHHHHHhccCCEEEEEc
Confidence 999865432 246778899999999988754
No 391
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=48.71 E-value=27 Score=32.56 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC-ce---eeEEEEc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR-YK---KHKWAIS 447 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G-f~---~l~W~~~ 447 (467)
+...+.++.|+|||||.+++..-...... .....+.+.+| |. .+-|...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAG-FLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECT-HHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhH-HHHHHHHHHhhhhheeccceeEec
Confidence 46789999999999999988432222211 12333444456 63 3556554
No 392
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=48.69 E-value=1.4e+02 Score=29.21 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=51.5
Q ss_pred hcCCCCCCceEEEECCC--ccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC----c--cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVG--TGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL----P--FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG--tG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L----p--f~d~sFD 381 (467)
..+.++. ++|=.|+| .|..+..++. .|..++.+ +.+....+.+...+....+....... . ...+.+|
T Consensus 162 ~~~~~~~--~vlI~g~~~~iG~~~~~~~~~~g~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (342)
T cd08266 162 ARLRPGE--TVLVHGAGSGVGSAAIQIAKLFGATVIAT--AGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVD 237 (342)
T ss_pred cCCCCCC--EEEEECCCchHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCc
Confidence 3455555 77877875 4455544444 48888774 34444444444433211111110000 0 1234689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++....- ..+.++.+.|+++|.++...
T Consensus 238 ~~i~~~g~----------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 238 VVVEHVGA----------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred EEEECCcH----------HHHHHHHHHhhcCCEEEEEe
Confidence 88865432 24667778899999987653
No 393
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=48.00 E-value=1.9e+02 Score=28.07 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=50.3
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC---ccCCCccceEEec
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL---PFFDNTMDLIHTT 386 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L---pf~d~sFDlVis~ 386 (467)
+.+++ +||-.|+ +.|..+..+++. |.+++.++. + ...+.+.+.+.-.++......+ ....+.+|+|+..
T Consensus 141 ~~~g~--~vli~g~~g~~g~~~~~la~~~g~~v~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 215 (319)
T cd08267 141 VKPGQ--RVLINGASGGVGTFAVQIAKALGAHVTGVCS--T-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDA 215 (319)
T ss_pred CCCCC--EEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC--H-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEEC
Confidence 55565 8888887 356666666655 888887542 2 4445554444311221111111 1234568999865
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..-. . ...... ...|+++|.++...
T Consensus 216 ~~~~----~---~~~~~~-~~~l~~~g~~i~~g 240 (319)
T cd08267 216 VGNS----P---FSLYRA-SLALKPGGRYVSVG 240 (319)
T ss_pred CCch----H---HHHHHh-hhccCCCCEEEEec
Confidence 3310 1 122222 23399999988643
No 394
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.86 E-value=1.3e+02 Score=30.80 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHH-HcCCccEEEc-cCCCCccCCCccceEEecccc
Q 012235 314 KPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIA-LRGLIPLYVT-LNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 314 ~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~-d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+++ +||=+|+| .|..+..+++. |..++.++ .+......+. +.|...++.. +...+.-..+.+|+|+-...-
T Consensus 179 ~~g~--~vlV~G~G~vG~~av~~Ak~~G~~vi~~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~ 254 (357)
T PLN02514 179 QSGL--RGGILGLGGVGHMGVKIAKAMGHHVTVIS--SSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPV 254 (357)
T ss_pred CCCC--eEEEEcccHHHHHHHHHHHHCCCeEEEEe--CCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCc
Confidence 4555 67766654 35555566655 77777643 3333343333 2342111111 111111011247887754321
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...+.+..+.|++||.++....
T Consensus 255 ---------~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 255 ---------FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---------hHHHHHHHHHhccCCEEEEECC
Confidence 2467778899999999887543
No 395
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=47.48 E-value=1.8e+02 Score=28.44 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=54.4
Q ss_pred HhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC----C-c-cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR----L-P-FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~----L-p-f~d~sF 380 (467)
...+.+++ .||=.|+ +.|..+..+++. |..++.+ +.+....+.+.+.+.-.++...... + . .....+
T Consensus 137 ~~~~~~~~--~vlI~g~~~~~g~~~~~la~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (324)
T cd08244 137 LATLTPGD--VVLVTAAAGGLGSLLVQLAKAAGATVVGA--AGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGV 212 (324)
T ss_pred hcCCCCCC--EEEEEcCCchHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCc
Confidence 34455565 6776774 455666666655 8888774 4444555555554431222211111 1 0 122468
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+....- ....+..+.|+++|.++...
T Consensus 213 d~vl~~~g~----------~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 213 TVVLDGVGG----------AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred eEEEECCCh----------HhHHHHHHHhccCcEEEEEe
Confidence 999865332 23577889999999988653
No 396
>PRK11677 hypothetical protein; Provisional
Probab=47.05 E-value=67 Score=29.18 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 012235 15 MAWLQLVLGGLVIVVSISSLFRFYAAG 41 (467)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (467)
|.|+..+.|++|-+|-.+.+.||.+..
T Consensus 1 M~W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccch
Confidence 678888888888888888888886554
No 397
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.19 E-value=2.4e+02 Score=27.38 Aligned_cols=85 Identities=21% Similarity=0.139 Sum_probs=50.9
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.||=.|+ +.|..+..+++. |..++.+ +.+....+.+.+.+....+. ...++ .++.+|+++....-
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~-~~~~~--~~~~~d~vl~~~g~------- 202 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALAGAHVVAV--VGSPARAEGLRELGAAEVVV-GGSEL--SGAPVDLVVDSVGG------- 202 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEe-ccccc--cCCCceEEEECCCc-------
Confidence 7777776 345555555554 8888774 34455566666555321111 11122 23468988854321
Q ss_pred hHHHHHHHHHhccCCCcEEEEEe
Q 012235 397 LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+..+.|+++|.++...
T Consensus 203 ---~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 ---PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ---HHHHHHHHHhcCCCEEEEEe
Confidence 35778899999999988654
No 398
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=46.18 E-value=77 Score=32.97 Aligned_cols=94 Identities=21% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCCccCCCccceEEecccccc
Q 012235 315 PGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 315 ~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+++ +||=.|+| .|..+..+++. |..|+.++.+. +...+.+.+.|...++.. +...+.-..+.+|+|+-...-
T Consensus 178 ~g~--~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~-- 252 (375)
T PLN02178 178 SGK--RLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS-EKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA-- 252 (375)
T ss_pred CCC--EEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh-HHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc--
Confidence 455 77777775 34555566654 88887754332 222344444443222211 100110001247888764332
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...+.+..+.|++||.++....
T Consensus 253 -------~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 253 -------EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -------HHHHHHHHHhhcCCCEEEEEcc
Confidence 2467788899999999987543
No 399
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=46.12 E-value=1.2e+02 Score=31.03 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=52.4
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCC--CC-----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQ--RL-----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~--~L-----pf~d~sF 380 (467)
..+.+++ +||=.|+|. |..+..+++. |.. +++ .+.++...+.+.+.+...++..... .+ ....+.+
T Consensus 179 ~~~~~g~--~vlI~g~g~vG~~a~~~a~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 179 AKVTPGS--TCAVFGLGGVGLSVIMGCKAAGASRIIA--VDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCC
Confidence 3455665 666677642 3344444444 765 566 3445555566655553222221111 10 0113568
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccC-CCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILR-PGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLK-PGG~LiI~~ 419 (467)
|+|+....- ...+.+..+.|+ ++|.++...
T Consensus 255 d~vid~~g~---------~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 255 DYAFEVIGS---------ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred cEEEECCCC---------HHHHHHHHHHhccCCCEEEEEe
Confidence 988854321 246778899999 999988754
No 400
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=45.39 E-value=1.8e+02 Score=28.71 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=52.1
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH-cCCccEEEccCCCC-----ccCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL-RGLIPLYVTLNQRL-----PFFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~-rg~i~~~~~d~~~L-----pf~d~sFDl 382 (467)
.+.+++ +||=.|+ +.|..+..+++. |..++.+ +.+....+.+.+ .+...++......+ ....+.+|+
T Consensus 142 ~~~~~~--~vlI~g~~g~ig~~~~~~a~~~G~~vi~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 142 KPKPGE--TVVVSAAAGAVGSVVGQIAKLLGARVVGI--AGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCCC--EEEEecCcchHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceE
Confidence 344554 7777774 355666666655 8888774 334444555544 34222222211111 011246888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+....- ..+.+..+.|+++|.++...
T Consensus 218 vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YFDNVGG----------EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEEcchH----------HHHHHHHHhcCCCceEEEEe
Confidence 8754321 36778899999999987643
No 401
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.98 E-value=2.2e+02 Score=27.62 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=50.7
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=.|+ |.|..+..+++ .|..++.+ +.+....+.+...+...++......++ .....+|+
T Consensus 141 ~~~~~~--~vli~g~~~~~g~~~~~~~~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 216 (328)
T cd08268 141 GLRPGD--SVLITAASSSVGLAAIQIANAAGATVIAT--TRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDV 216 (328)
T ss_pred CCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceE
Confidence 344554 7787776 34444444444 38888874 444445555544443222222211111 11235888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++....- ....++.+.++++|.++...
T Consensus 217 vi~~~~~----------~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 217 VFDPVGG----------PQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred EEECCch----------HhHHHHHHhhccCCEEEEEE
Confidence 8864332 24567778899999988643
No 402
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=44.66 E-value=1.9e+02 Score=28.62 Aligned_cols=93 Identities=18% Similarity=0.128 Sum_probs=52.4
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceE
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlV 383 (467)
.+.+++ +||=.|+ +.|..+..+++. |.+++.+ ..+....+.+.+.+.-.++..+...+ ...++.+|+|
T Consensus 136 ~~~~~~--~vlI~ga~g~ig~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v 211 (329)
T cd08250 136 EMKSGE--TVLVTAAAGGTGQFAVQLAKLAGCHVIGT--CSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVV 211 (329)
T ss_pred CCCCCC--EEEEEeCccHHHHHHHHHHHHcCCeEEEE--eCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEE
Confidence 455565 6776664 456666666655 8888774 34444455554444212222211111 0113458888
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+....- ..+.++.+.|+++|.++..
T Consensus 212 ~~~~g~----------~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 212 YESVGG----------EMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred EECCcH----------HHHHHHHHHhccCCeEEEE
Confidence 854321 4678889999999998754
No 403
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=44.45 E-value=45 Score=30.39 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=57.8
Q ss_pred eEEEECCCcc--HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTG--TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG--~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|-=||.|.= .++..|++.|+.|+.+| .++...+.+.+.+ + ....+..++ -...|+|++.-. +...
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d--~~~~~~~~~~~~g-~-~~~~s~~e~---~~~~dvvi~~v~-----~~~~ 70 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYD--RSPEKAEALAEAG-A-EVADSPAEA---AEQADVVILCVP-----DDDA 70 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEE--SSHHHHHHHHHTT-E-EEESSHHHH---HHHBSEEEE-SS-----SHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeec--cchhhhhhhHHhh-h-hhhhhhhhH---hhcccceEeecc-----cchh
Confidence 3444666642 56666777799999954 5566666666665 1 112222222 133488876543 2333
Q ss_pred HHHHHHH--HHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 398 LDFILFD--WDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 398 l~~~L~e--l~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.+.++.+ +...|++|..++-.+ ....+....+.+.++..|..-+
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhccceee
Confidence 5677777 788887776655422 2222223366666666665444
No 404
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=44.43 E-value=1.2e+02 Score=30.59 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=50.6
Q ss_pred ceEEEECCCc--cHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGT--GTFAARMREQNV--TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGt--G~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|.=||+|. +.++..+.+.|. .|+++ |.++...+.+.+.+.......+... .-...|+|+..-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~--dr~~~~~~~a~~~g~~~~~~~~~~~---~~~~aDvViiavp~~---- 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGA--DRSAETRARARELGLGDRVTTSAAE---AVKGADLVILCVPVG---- 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE--ECCHHHHHHHHhCCCCceecCCHHH---HhcCCCEEEECCCHH----
Confidence 3678889886 356666776674 67774 4555566666665532222222111 123578888765441
Q ss_pred hhhHHHHHHHHHhccCCCcEEE
Q 012235 395 MLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~Li 416 (467)
....++.++...+++|+.++
T Consensus 78 --~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 --ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred --HHHHHHHHHHhhCCCCCEEE
Confidence 12456777777888887543
No 405
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=44.42 E-value=16 Score=31.92 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=55.2
Q ss_pred hhhhhcCcCccCccccccccccc-----------cccCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 012235 35 FRFYAAGFFMHNEDICLHFYSVK-----------DVYDGF--DIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALD 101 (467)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (467)
++|.++-.+...+..|.+.|||. .+-.|+ |++.|.+.+..|+..+|- .-|. ..-+..+
T Consensus 6 ~~f~aaH~l~~~~g~c~~lHGH~y~v~v~v~g~~~~~~g~v~DF~~lk~~~~~i~~~lDh--~~Ln-------~~~~~~~ 76 (123)
T PF01242_consen 6 FKFSAAHRLPGHDGKCERLHGHSYRVEVEVEGEELDEDGMVVDFGDLKKIIKEIDDQLDH--KFLN-------EDDPEFD 76 (123)
T ss_dssp EEEEEEE--TTTTGGGGSSEEEEEEEEEEEEEESSTTTSSSS-HHHHHHHHHHHHHHHTT--EEGG-------HHSGCGC
T ss_pred EEEEeEEecCCCCCCcccccCCEEEEEEEEEEeeCCCCCEEEEHHHHHHHHHHHHHHhCc--cccc-------CCChhhh
Confidence 45666666666777899999863 233555 888899888888877765 2221 0111111
Q ss_pred -h-hhcHHHHHHHHHHHHhhhhhhhhhheeeeccc
Q 012235 102 -K-TITRLEYKNFLEVEVIRPLYSAHIALRQIRLP 134 (467)
Q Consensus 102 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (467)
. +.|....-+++.+++-..|-...+.+.++++-
T Consensus 77 ~~~~pT~E~lA~~i~~~l~~~l~~~~~~l~~V~v~ 111 (123)
T PF01242_consen 77 DINNPTAENLARWIFERLKEKLSPPGVRLVKVEVY 111 (123)
T ss_dssp SSTS--HHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcccccEEEEEEEE
Confidence 1 36778888888888766554566677777764
No 406
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=44.37 E-value=1.3e+02 Score=32.93 Aligned_cols=104 Identities=20% Similarity=0.100 Sum_probs=62.6
Q ss_pred ceEEEECCCcc--HHHHHHhhCC--CEEEEEecCCCHHHHHHHHH--cC--Cc--cEEEc---cCCCCccCC-CccceEE
Q 012235 319 RIGLDFGVGTG--TFAARMREQN--VTIVSTALNLGAPFNEMIAL--RG--LI--PLYVT---LNQRLPFFD-NTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG--~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~--rg--~i--~~~~~---d~~~Lpf~d-~sFDlVi 384 (467)
..++|+|.|.| .+++...-++ -.++. +|.+..|...... |+ .+ .++.. --..+|... +.||+|+
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~--Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSL--VDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEe--eccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 36788887766 4555554443 23444 7777777766542 22 11 11111 223456443 5599999
Q ss_pred eccccccccchhhHHHHHHHHH-hccCCCcEEEEEecccCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWD-RILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~-RvLKPGG~LiI~~~~~~~ 424 (467)
+.+.+++...........+++. +..++||++++.......
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 9999987776654445555544 567899999887654433
No 407
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=44.26 E-value=36 Score=38.30 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecC
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALN 348 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiD 348 (467)
+.++. .|||+||..|.|.....+. |.-|+|+|+-
T Consensus 42 l~~a~--~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 42 LEKAH--VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred ccccc--hheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 34454 8999999999998877765 5667775543
No 408
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=43.58 E-value=92 Score=31.06 Aligned_cols=81 Identities=6% Similarity=0.014 Sum_probs=45.9
Q ss_pred ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccceEEeccccccccchhhHHH
Q 012235 328 TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDLIHTTGFMDGWLDMLLLDF 400 (467)
Q Consensus 328 tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDlVis~~~L~h~~~~~~l~~ 400 (467)
.|..+..+++. |.+++++ +.++...+.+.+.+.-.++......+. ...+.+|+|+-...- .
T Consensus 156 vG~~a~q~a~~~G~~vi~~--~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~----------~ 223 (324)
T cd08291 156 LGRMLVRLCKADGIKVINI--VRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGG----------G 223 (324)
T ss_pred HHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCc----------H
Confidence 45566666655 8888774 445555666665553233322211111 123468988854321 2
Q ss_pred HHHHHHhccCCCcEEEEEec
Q 012235 401 ILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 401 ~L~el~RvLKPGG~LiI~~~ 420 (467)
...+..+.|++||.++....
T Consensus 224 ~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 224 LTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred HHHHHHHhhCCCCEEEEEEe
Confidence 34556788899999887543
No 409
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=43.45 E-value=1.6e+02 Score=29.47 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=50.8
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-ccCCCccceEEeccc
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-PFFDNTMDLIHTTGF 388 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-pf~d~sFDlVis~~~ 388 (467)
.+.+++ +||=.|+| .|..+..+++. |..++.+ +.+....+.+.+.+...++......+ ....+.+|+|+....
T Consensus 166 ~~~~g~--~vlV~g~g~vG~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g 241 (337)
T cd05283 166 GVGPGK--RVGVVGIGGLGHLAVKFAKALGAEVTAF--SRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVS 241 (337)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCC
Confidence 345554 55546653 34444444444 8887774 44445556665544222221111111 111456888885433
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
- ...+.++.+.|+++|.++...
T Consensus 242 ~---------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 242 A---------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred C---------cchHHHHHHHhcCCCEEEEEe
Confidence 2 124677889999999988753
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=43.01 E-value=4.6e+02 Score=28.39 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=66.5
Q ss_pred eEEEEC-CCcc--H----HHHHHhhCCCEEEEEecCCCH-HHHHHH---HHcCCccEEEccCCCCc----------cCCC
Q 012235 320 IGLDFG-VGTG--T----FAARMREQNVTIVSTALNLGA-PFNEMI---ALRGLIPLYVTLNQRLP----------FFDN 378 (467)
Q Consensus 320 ~VLDIG-CGtG--~----~a~~La~~g~~V~gvdiDiS~-~~l~~a---~~rg~i~~~~~d~~~Lp----------f~d~ 378 (467)
.|+=+| -|.| + ++..+.++|..|.-++.|.-. .+.++. +++..++++......-| ...+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~ 181 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE 181 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC
Confidence 566777 5666 3 444444557777777777432 334333 23333666543222112 1235
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH-HHcCceeeEEEEc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF-LQFRYKKHKWAIS 447 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i-~~~Gf~~l~W~~~ 447 (467)
.||+|+..-+-.+..+. .+-.-+.++.+...|.=.+++.+.....+.. ...+.+ +..++..+=|+..
T Consensus 182 ~~DvViIDTaGr~~~d~-~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~-~~a~~F~~~~~~~g~IlTKl 249 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQED-SLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE-AQAKAFKDSVDVGSVIITKL 249 (429)
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHHHhhhcCCcEEEEEeccccChhHH-HHHHHHHhccCCcEEEEECc
Confidence 79999987665333332 2345566666778888776666544333323 333444 3455655555433
No 411
>PRK10083 putative oxidoreductase; Provisional
Probab=42.81 E-value=1.8e+02 Score=29.09 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=52.7
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhh-C-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCC----CccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMRE-Q-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQR----LPFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~-~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~----Lpf~d~sFDl 382 (467)
..+.+++ +||=.|+| .|..+..+++ . |.. +++ .+.++...+.+.+.|.-.++...... +.-....+|+
T Consensus 156 ~~~~~g~--~vlI~g~g~vG~~~~~~a~~~~G~~~v~~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 156 TGPTEQD--VALIYGAGPVGLTIVQVLKGVYNVKAVIV--ADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 3455666 77778854 2345555665 3 775 555 45555566666655531222111111 1111123456
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+....- ...+.+..+.|+++|.++....
T Consensus 232 vid~~g~---------~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 232 IIDAACH---------PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred EEECCCC---------HHHHHHHHHHhhcCCEEEEEcc
Confidence 6653321 2467888999999999987543
No 412
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=42.47 E-value=1.7e+02 Score=28.59 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=50.1
Q ss_pred CCCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccceE
Q 012235 313 IKPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDlV 383 (467)
+.+++ +||=.|++ .|..+..+++. |..++.+. .+....+.+.+.+.-.++......+ ......+|+|
T Consensus 136 ~~~~~--~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v 211 (323)
T cd05282 136 LPPGD--WVIQNAANSAVGRMLIQLAKLLGFKTINVV--RRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLA 211 (323)
T ss_pred CCCCC--EEEEcccccHHHHHHHHHHHHCCCeEEEEe--cChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEE
Confidence 44555 77777763 55666666655 88877643 3334445554444211221111011 0123468988
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+....- ....+..+.|+++|.++..
T Consensus 212 l~~~g~----------~~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 212 LDAVGG----------ESATRLARSLRPGGTLVNY 236 (323)
T ss_pred EECCCC----------HHHHHHHHhhCCCCEEEEE
Confidence 864432 1345667899999998754
No 413
>PLN02702 L-idonate 5-dehydrogenase
Probab=41.73 E-value=2.6e+02 Score=28.47 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=52.8
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc--------cCC
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP--------FFD 377 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp--------f~d 377 (467)
..+.+++ +||=+|+| .|..+..+++. |.. ++. ++.++...+.+.+.+.-..+.-+. ..++ ...
T Consensus 177 ~~~~~g~--~vlI~g~g~vG~~~~~~a~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 177 ANIGPET--NVLVMGAGPIGLVTMLAARAFGAPRIVI--VDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcC
Confidence 3455555 67777764 34455555554 765 455 455555556555555311111111 1110 113
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+|+|+....- ...+.+..+.|+++|.++...
T Consensus 253 ~~~d~vid~~g~---------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 253 GGIDVSFDCVGF---------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCEEEECCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 468888864331 246788899999999987654
No 414
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=41.71 E-value=49 Score=35.00 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=58.7
Q ss_pred eEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCc-cCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLP-FFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lp-f~d~sFDlVis~~ 387 (467)
++||.=+|+|.=+.+.+.. + ..|+. -|+++.+.+.+.++ + .+.+...|+..+= ...+.||+|=..-
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~--NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTA--NDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEE--EES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEE--ecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 7999999999888777766 2 45555 67778777776543 2 2445566655442 2467899987532
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+..+ ..++..+.+.+|.||.|.++
T Consensus 130 ----fGSp---~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 130 ----FGSP---APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ----SS-----HHHHHHHHHHEEEEEEEEEE
T ss_pred ----CCCc---cHhHHHHHHHhhcCCEEEEe
Confidence 2222 36899999999999999995
No 415
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.46 E-value=1.1e+02 Score=27.34 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=55.8
Q ss_pred eEEEECCCcc-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTG-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|.++|-|.= ..+.+|+++|+.++++|++.. .+. . .+.++..|..+-... =..-|+|.|.... + .
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-----~a~-~-g~~~v~DDitnP~~~iY~~A~lIYSiRpp-----p-E 82 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-----TAP-E-GLRFVVDDITNPNISIYEGADLIYSIRPP-----P-E 82 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCCcEEEEecccc-----cCc-c-cceEEEccCCCccHHHhhCccceeecCCC-----H-H
Confidence 7899999876 678889999999999777643 111 2 267888887653311 1346888877665 2 1
Q ss_pred HHHHHHHHHhccCCCcEEEEEecc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+...+-++.+.++ .-++|....
T Consensus 83 l~~~ildva~aVg--a~l~I~pL~ 104 (129)
T COG1255 83 LQSAILDVAKAVG--APLYIKPLT 104 (129)
T ss_pred HHHHHHHHHHhhC--CCEEEEecC
Confidence 3455666666654 445554433
No 416
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=41.39 E-value=2.3e+02 Score=28.03 Aligned_cols=94 Identities=15% Similarity=0.017 Sum_probs=52.0
Q ss_pred cCCCCCCceEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=.| .+.|..+..+++. |.+++++ +.+....+.+.+.+...++......+. ...+.+|+
T Consensus 137 ~~~~g~--~vlI~g~~g~ig~~~~~lak~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 212 (327)
T PRK10754 137 EIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIGT--VGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRV 212 (327)
T ss_pred CCCCCC--EEEEEeCCcHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEE
Confidence 345555 666554 3455666666655 8888874 444555555555453222222211111 12345788
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.... ...+.+..+.|+++|.++...
T Consensus 213 vl~~~~----------~~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 213 VYDSVG----------KDTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred EEECCc----------HHHHHHHHHHhccCCEEEEEc
Confidence 874321 135667888999999988653
No 417
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=41.39 E-value=2.5e+02 Score=27.58 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=54.0
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-Cc------cCCCccc
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LP------FFDNTMD 381 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lp------f~d~sFD 381 (467)
.+.+++ +||=.|+ +.|..+..+++. |..++. ...++...+.+.+.+...++...... +. .....+|
T Consensus 137 ~~~~~~--~vlI~ga~g~~g~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (334)
T PTZ00354 137 DVKKGQ--SVLIHAGASGVGTAAAQLAEKYGAATII--TTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVN 212 (334)
T ss_pred CCCCCC--EEEEEcCCchHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCce
Confidence 345555 6776664 466666666655 887665 34445556666544431122211111 10 1235688
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++.... ...+..+.+.|+++|.++...
T Consensus 213 ~~i~~~~----------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 213 LVLDCVG----------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred EEEECCc----------hHHHHHHHHHhccCCeEEEEe
Confidence 8886432 146778889999999988754
No 418
>PRK06701 short chain dehydrogenase; Provisional
Probab=41.30 E-value=1.7e+02 Score=28.98 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=52.7
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHH---HHHHHcC-CccEEEccCCCCc-----cC-----CCccce
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFN---EMIALRG-LIPLYVTLNQRLP-----FF-----DNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l---~~a~~rg-~i~~~~~d~~~Lp-----f~-----d~sFDl 382 (467)
++|=.|++.| .++..|+++|..|+.++.+...... +.+...+ .+.++..|..+.. +. -+.+|+
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~ 127 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRLDI 127 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888887665 4666777789998876554322211 1122223 2556666654422 10 135788
Q ss_pred EEeccccccc------cch-----------hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGW------LDM-----------LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~------~~~-----------~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+....+. .+. ...-.+++.+.+.++++|.+++..
T Consensus 128 lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 128 LVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred EEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 8765443111 001 111234445556667778877644
No 419
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.26 E-value=31 Score=35.52 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccCCCCH
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~ 427 (467)
.++.+|..+.++|+|||+|++.+|....+..
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRi 252 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLEDRI 252 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHHHH
Confidence 3678999999999999999999998766543
No 420
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=40.55 E-value=2.2e+02 Score=29.74 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=53.2
Q ss_pred cCCCCCCceEEEEC--CCccHHHHHHhhC-CC---EEEEEecCCCHHHHHHHHHc--------CCc-cEEEccC-CCCc-
Q 012235 312 AIKPGETRIGLDFG--VGTGTFAARMREQ-NV---TIVSTALNLGAPFNEMIALR--------GLI-PLYVTLN-QRLP- 374 (467)
Q Consensus 312 ~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~---~V~gvdiDiS~~~l~~a~~r--------g~i-~~~~~d~-~~Lp- 374 (467)
.+.+++ +||=+| .|.|..+..+++. |. .|++ .+.++..++.+.+. |.. .++.... ..+.
T Consensus 172 ~~~~g~--~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~--~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~ 247 (410)
T cd08238 172 GIKPGG--NTAILGGAGPMGLMAIDYAIHGPIGPSLLVV--TDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHA 247 (410)
T ss_pred CCCCCC--EEEEEeCCCHHHHHHHHHHHhcccCCceEEE--EcCCHHHHHHHHHhccccccccCceEEEECCCccccHHH
Confidence 455665 777776 3467777777765 33 6777 56666666666553 211 1121110 1110
Q ss_pred -----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 375 -----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 375 -----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.....+|+|+....- ...+.+..+.++++|.+++
T Consensus 248 ~v~~~t~g~g~D~vid~~g~---------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVPV---------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhCCCCCCEEEEcCCC---------HHHHHHHHHHhccCCeEEE
Confidence 123468888764322 2467888899998887654
No 421
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=40.30 E-value=2.1e+02 Score=28.35 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=50.9
Q ss_pred eEEEECC--CccHHHHHHhh-C-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEEeccccc
Q 012235 320 IGLDFGV--GTGTFAARMRE-Q-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~-~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVis~~~L~ 390 (467)
+||=.|+ +.|..+..+++ . |.+|+++ ..+....+.+.+.+.-.++..+ ..+. ...+.+|+|+....-
T Consensus 151 ~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~--~~~~~~~~~l~~~g~~~~~~~~-~~~~~~i~~~~~~~vd~vl~~~~~- 226 (336)
T TIGR02817 151 ALLIIGGAGGVGSILIQLARQLTGLTVIAT--ASRPESQEWVLELGAHHVIDHS-KPLKAQLEKLGLEAVSYVFSLTHT- 226 (336)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCEEEEE--cCcHHHHHHHHHcCCCEEEECC-CCHHHHHHHhcCCCCCEEEEcCCc-
Confidence 6777764 56677777776 3 8888874 4444455555544432222211 1110 123468888853211
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...+.+..+.|+++|.++..
T Consensus 227 --------~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 227 --------DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred --------HHHHHHHHHHhccCCEEEEE
Confidence 24677889999999998753
No 422
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=40.13 E-value=84 Score=35.21 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=52.3
Q ss_pred eEEEECCCccHHHHH----HhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAAR----MREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~----La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h 391 (467)
+|+=+|+| .++.. |.++|..++. +|.+++..+.+++.| .+++.+|..+... .-+..|++++...=
T Consensus 402 ~vII~G~G--r~G~~va~~L~~~g~~vvv--ID~d~~~v~~~~~~g-~~v~~GDat~~~~L~~agi~~A~~vv~~~~d-- 474 (601)
T PRK03659 402 QVIIVGFG--RFGQVIGRLLMANKMRITV--LERDISAVNLMRKYG-YKVYYGDATQLELLRAAGAEKAEAIVITCNE-- 474 (601)
T ss_pred CEEEecCc--hHHHHHHHHHHhCCCCEEE--EECCHHHHHHHHhCC-CeEEEeeCCCHHHHHhcCCccCCEEEEEeCC--
Confidence 45555554 44444 4455889988 555567777777665 6788898776541 22456776654321
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
++ ....+-...|.+.|...++.
T Consensus 475 ---~~-~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 475 ---PE-DTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred ---HH-HHHHHHHHHHHHCCCCeEEE
Confidence 11 12345556677788888766
No 423
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.64 E-value=67 Score=30.29 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=59.2
Q ss_pred EEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc----------CCCCccC------CCccce
Q 012235 321 GLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL----------NQRLPFF------DNTMDL 382 (467)
Q Consensus 321 VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d----------~~~Lpf~------d~sFDl 382 (467)
|-=+|.|. | ..+..|++.|++|+++|+| +..++.+.+ |..++.... ..++-+. -...|+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~--~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDID--EEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S---HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCC--hHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 44567774 3 5667788889999996555 444444432 111111100 0111110 123566
Q ss_pred EEec-cccc---cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 383 IHTT-GFMD---GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 383 Vis~-~~L~---h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
++.. .... .-.+...++.++..+.+.|++|-.+++-+-..+....+.+..++++.+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 5532 2221 122334467899999999999887777555555544446667777654
No 424
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.63 E-value=1.4e+02 Score=33.00 Aligned_cols=108 Identities=11% Similarity=-0.022 Sum_probs=59.7
Q ss_pred eEEEECCCcc--HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTG--TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG--~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h~~ 393 (467)
+++=+|||.= ..+..|.++|..++. +|.+++..+.+++.+ .+.+.+|..+.. ..-+..|.++..-.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvv--Id~d~~~~~~~~~~g-~~~i~GD~~~~~~L~~a~i~~a~~viv~~~----- 490 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVV--IETSRTRVDELRERG-IRAVLGNAANEEIMQLAHLDCARWLLLTIP----- 490 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEE--EECCHHHHHHHHHCC-CeEEEcCCCCHHHHHhcCccccCEEEEEcC-----
Confidence 5666776642 344555566899988 455566677777655 678899876642 12246776654322
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
++.. ...+-...|...|...++.-. ++. +-.+.+++.|...+
T Consensus 491 ~~~~-~~~iv~~~~~~~~~~~iiar~-----~~~-~~~~~l~~~Gad~v 532 (558)
T PRK10669 491 NGYE-AGEIVASAREKRPDIEIIARA-----HYD-DEVAYITERGANQV 532 (558)
T ss_pred ChHH-HHHHHHHHHHHCCCCeEEEEE-----CCH-HHHHHHHHcCCCEE
Confidence 1110 122333456667777666522 111 33445566765543
No 425
>PRK07806 short chain dehydrogenase; Provisional
Probab=38.66 E-value=3.3e+02 Score=25.64 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=49.9
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHH---HHHHHcC-CccEEEccCCCCcc----CC------Cccce
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFN---EMIALRG-LIPLYVTLNQRLPF----FD------NTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l---~~a~~rg-~i~~~~~d~~~Lpf----~d------~sFDl 382 (467)
++|-.|++.| .++..|+++|.+|+.++-+...... ......+ .+.++.+|..+..- .. +..|.
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 87 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGLDA 87 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCcE
Confidence 7888886444 3555566679888875443322111 1112222 24556666544320 01 35788
Q ss_pred EEeccccccc----------cchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGW----------LDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~----------~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+.+...... .+......+++.+.+.++.+|.+++.
T Consensus 88 vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 88 LVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred EEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 7765432110 01111235666676666667776654
No 426
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=38.66 E-value=35 Score=33.49 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=24.1
Q ss_pred ceEEEECCCccHHHHHHhhC----------CCEEEEEecCCCHHHHHHH
Q 012235 319 RIGLDFGVGTGTFAARMREQ----------NVTIVSTALNLGAPFNEMI 357 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~----------g~~V~gvdiDiS~~~l~~a 357 (467)
-+|+|+|+|+|.++..+.+. ...++- ++.|+.+.+..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~i--vE~Sp~L~~~Q 66 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHI--VEISPYLRERQ 66 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEE--E-TTCCCHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEE--EcCCHHHHHHH
Confidence 47999999999999888764 235665 55665554433
No 427
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=38.33 E-value=1.9e+02 Score=29.21 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=53.2
Q ss_pred eEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEE-ccCCCC------ccCCCccceEEeccccc
Q 012235 320 IGLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYV-TLNQRL------PFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~-~d~~~L------pf~d~sFDlVis~~~L~ 390 (467)
+|+=+|+|. |.++..|++.|..|+.+ +-+.+.++.+.+++.+.+.. +..... +-..+.||+|+..-=-.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv--~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLI--LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEE--EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 578899884 47888888888888884 44445556565442121111 110110 11235789887542111
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
....++..+...+.++..++.
T Consensus 82 ------~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 82 ------DAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ------hHHHHHHHHHhhCCCCCEEEE
Confidence 135788899999999886554
No 428
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=38.29 E-value=2.3e+02 Score=28.24 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=50.6
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCH--HHHHHHHHcCCccEEEccCC---CC-----ccCCC
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGA--PFNEMIALRGLIPLYVTLNQ---RL-----PFFDN 378 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~--~~l~~a~~rg~i~~~~~d~~---~L-----pf~d~ 378 (467)
.+.+++ +||=.|+ +.|..+..+++. |..++.+.-+... ...+.+.+.+.-.++..... .. ...++
T Consensus 143 ~~~~g~--~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 220 (341)
T cd08290 143 KLQPGD--WVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGG 220 (341)
T ss_pred ccCCCC--EEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCC
Confidence 455665 7777765 455666666655 8877764322211 23444444342222221110 11 01122
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+|+|+....- ..+.+..+.|+++|.++...
T Consensus 221 ~~d~vld~~g~----------~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 221 RPKLALNCVGG----------KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred CceEEEECcCc----------HhHHHHHHHhCCCCEEEEEe
Confidence 58988854332 23456789999999988653
No 429
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.71 E-value=1.6e+02 Score=28.15 Aligned_cols=65 Identities=15% Similarity=0.003 Sum_probs=43.0
Q ss_pred eEEEECCCccH--HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGTGT--FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~--~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+||=+|.|.-. -+..|.+.|..|+.++.+..+...+ ..+.+.+.++..+...-. -..+|+|++.-
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-l~~~~~i~~~~~~~~~~d--l~~~~lVi~at 77 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-LAEQGGITWLARCFDADI--LEGAFLVIAAT 77 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-HHHcCCEEEEeCCCCHHH--hCCcEEEEECC
Confidence 78999999653 3456667799999888887754444 445556777776644221 24578887654
No 430
>PTZ00270 variable surface protein Vir32; Provisional
Probab=37.62 E-value=10 Score=39.34 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCcCcc-----Cccccccccc
Q 012235 17 WLQLVLGGLVIVVSISSLFRFYAAGFFMH-----NEDICLHFYS 55 (467)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 55 (467)
+-+++||++|.++--+|||||+.-|..+. | ..=.|+|+
T Consensus 271 ~g~~~lGvv~t~~tsgalYr~Tplg~~~r~~~g~~-~~~~~~~~ 313 (333)
T PTZ00270 271 SGNVLLGVVATSMTSGALYKFTPLGRMLRNGFGWN-RNMRNING 313 (333)
T ss_pred ccceehhhhhhhhhhhhheeccchHHHHHhccccc-cccccccC
Confidence 45789999999999999999999875443 4 33357776
No 431
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=37.34 E-value=95 Score=32.84 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred ceEEEECCCccHHHHHHhhC----------CCEEEEEecCCCHHHHHH
Q 012235 319 RIGLDFGVGTGTFAARMREQ----------NVTIVSTALNLGAPFNEM 356 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~----------g~~V~gvdiDiS~~~l~~ 356 (467)
..+++||.|+|.++..+... ...+.- ++.|++..+.
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~i--iE~s~~L~~~ 124 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYI--IEPSPELRAR 124 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEE--EecCHHHHHH
Confidence 37999999999999888754 223444 6677765443
No 432
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=37.20 E-value=1.9e+02 Score=29.17 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=54.9
Q ss_pred EEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 321 GLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 321 VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
|-=||+|. ..++..|++.|..|+.++ .++...+.+.+.+. .. ..+.+.+.-.....|+|+..-.- ....
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~d--r~~~~~~~~~~~g~-~~-~~s~~~~~~~~~~advVi~~vp~-----~~~~ 73 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYD--VNQEAVDVAGKLGI-TA-RHSLEELVSKLEAPRTIWVMVPA-----GEVT 73 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHCCC-ee-cCCHHHHHHhCCCCCEEEEEecC-----chHH
Confidence 33467664 356677777789988854 44555555544442 11 11222111011124777654332 2234
Q ss_pred HHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 399 DFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 399 ~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
+.++.++...+++|-. ++..-.........+.+.++..|.
T Consensus 74 ~~v~~~i~~~l~~g~i-vid~st~~~~~~~~~~~~~~~~g~ 113 (299)
T PRK12490 74 ESVIKDLYPLLSPGDI-VVDGGNSRYKDDLRRAEELAERGI 113 (299)
T ss_pred HHHHHHHhccCCCCCE-EEECCCCCchhHHHHHHHHHHcCC
Confidence 5677778777887754 443322222233355556665553
No 433
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.72 E-value=3.1e+02 Score=29.63 Aligned_cols=110 Identities=10% Similarity=0.062 Sum_probs=67.1
Q ss_pred HHHHHHhhCCCEEEEEecCC-CHHH---HHHHHHcCCccEEEccCCCCc----------cCCCccceEEeccccccccch
Q 012235 330 TFAARMREQNVTIVSTALNL-GAPF---NEMIALRGLIPLYVTLNQRLP----------FFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 330 ~~a~~La~~g~~V~gvdiDi-S~~~---l~~a~~rg~i~~~~~d~~~Lp----------f~d~sFDlVis~~~L~h~~~~ 395 (467)
-++.++.++|+.+.-+.-|. -+.+ +++.+.+..++++..-.+.-| |..+.||+|+..-+-.|-.+.
T Consensus 120 KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 120 KLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred HHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhH
Confidence 56677777787766555552 2333 333344445788776433333 456789999998777565554
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
. +-.-+.++.+.++|+-.+++.+-..-..-.+.....-+..++.
T Consensus 200 s-LfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg 243 (483)
T KOG0780|consen 200 S-LFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVG 243 (483)
T ss_pred H-HHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccc
Confidence 3 4455677889999999998877655443333333333444443
No 434
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.60 E-value=3.1e+02 Score=26.89 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=50.5
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp------f~d~sFDl 382 (467)
.+.+++ +|+=.|+| .|..+..+++. |.+++.+ +.+....+.+.+.+...++.... ..+. ...+.+|+
T Consensus 157 ~~~~g~--~vli~g~g~~g~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 232 (336)
T cd08276 157 PLKPGD--TVLVQGTGGVSLFALQFAKAAGARVIAT--SSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDH 232 (336)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcE
Confidence 455555 55544543 33344444443 8888774 34445555555544322222111 1110 12346898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++.... ...+.++.+.|+++|.++...
T Consensus 233 ~i~~~~----------~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 233 VVEVGG----------PGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred EEECCC----------hHHHHHHHHhhcCCCEEEEEc
Confidence 886432 145777889999999988754
No 435
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=36.24 E-value=1.2e+02 Score=32.30 Aligned_cols=92 Identities=21% Similarity=0.138 Sum_probs=61.6
Q ss_pred CceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHc---C---CccEEEccCCCCccC-CCccceEEeccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALR---G---LIPLYVTLNQRLPFF-DNTMDLIHTTGF 388 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~r---g---~i~~~~~d~~~Lpf~-d~sFDlVis~~~ 388 (467)
..+|||.=+|+|.=+.+.+.. +. .|+. -|+++.+.+.+.++ + ....+..|+..+=.. ...||+|=..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~l--NDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD-- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVL--NDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID-- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEE--ccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC--
Confidence 348999999999988888876 33 4444 78888888877653 2 133444554443221 3667777532
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.+..+ .-++....+.+|.||++.++
T Consensus 129 --PFGSP---aPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 --PFGSP---APFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred --CCCCC---chHHHHHHHHhhcCCEEEEE
Confidence 22223 35888889999999999884
No 436
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=36.23 E-value=88 Score=28.65 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC---ccEEEccCCCCccCC-CccceEEeccccccccchhhHHHHHHHHH
Q 012235 331 FAARMREQNVTIVSTALNLGAPFNEMIALRGL---IPLYVTLNQRLPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWD 406 (467)
Q Consensus 331 ~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~---i~~~~~d~~~Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~ 406 (467)
++..+...|..|..+..--+ ..||. ..+..++-...+.+. +.+|++++... ..+....
T Consensus 12 la~a~~~~G~~v~~~~~ygs-------~~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l~~-----------~~~~~~~ 73 (173)
T PF01558_consen 12 LARAAAREGYYVQSTPEYGS-------EIRGGPVVSHVRISDEPIIPSPPVGEADILVALDP-----------EALERHL 73 (173)
T ss_dssp HHHHHHHTTSEEEEEEEEES-------SSSSSCEEEEEEEESS--SSSS-TSSESEEEESSH-----------HHHHHCG
T ss_pred HHHHHHHcCCCEEEEeCCCh-------hhcCCeEEEEEEEecCcCccCcccCCCCEEEEcCH-----------HHHHHHh
Confidence 34444455888876432211 12443 234445531333333 89999998753 3455778
Q ss_pred hccCCCcEEEEEecc
Q 012235 407 RILRPGGLLWIDRFF 421 (467)
Q Consensus 407 RvLKPGG~LiI~~~~ 421 (467)
.-|+|||.+++.+..
T Consensus 74 ~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 74 KGLKPGGVVIINSSL 88 (173)
T ss_dssp TTCETTEEEEEETTT
T ss_pred cCcCcCeEEEEECCC
Confidence 889999999997643
No 437
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=36.13 E-value=2.3e+02 Score=29.21 Aligned_cols=95 Identities=9% Similarity=0.100 Sum_probs=51.5
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc----------CCCCccCCC
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL----------NQRLPFFDN 378 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d----------~~~Lpf~d~ 378 (467)
.+.+++ +||=.|+|. |..+..+++. |. .++.+ +.+....+.+.+-+.-.++... ..++ ....
T Consensus 200 ~~~~g~--~VlV~g~g~vG~~ai~lA~~~G~~~vi~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~ 274 (384)
T cd08265 200 GFRPGA--YVVVYGAGPIGLAAIALAKAAGASKVIAF--EISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGW 274 (384)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCC
Confidence 455665 666667642 3333444444 77 67774 4444445555555531122111 0011 1234
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+|+|+....- . ...+.+..+.|+++|.++...
T Consensus 275 gvDvvld~~g~-----~---~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAAGA-----P---PATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECCCC-----c---HHHHHHHHHHHHcCCEEEEEC
Confidence 68988865321 1 246788889999999998753
No 438
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=36.13 E-value=2.6e+02 Score=28.83 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=53.3
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC------------------
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ------------------ 371 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~------------------ 371 (467)
+.+++ +||=.|+ +.|..+..+++. |..++. ++.+....+.+.+.|...++.....
T Consensus 191 ~~~g~--~vlV~ga~g~iG~a~~~lak~~G~~vv~--~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
T cd08246 191 VKPGD--NVLIWGASGGLGSMAIQLARAAGANPVA--VVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWT 266 (393)
T ss_pred CCCCC--EEEEECCCcHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhh
Confidence 44555 7888886 345565666655 888776 3456666666766553222211000
Q ss_pred -C---C-----c-cCCC-ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 372 -R---L-----P-FFDN-TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 372 -~---L-----p-f~d~-sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. + . .... .+|+|+....- ..+.+..+.|+++|.++...
T Consensus 267 ~~~~~~~~~v~~l~~~~~g~d~vid~~g~----------~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 267 KEARRFGKAIWDILGGREDPDIVFEHPGR----------ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred hccchHHHHHHHHhCCCCCCeEEEECCch----------HhHHHHHHHhccCCEEEEEc
Confidence 0 0 0 0122 58888754221 24677789999999998753
No 439
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=35.75 E-value=2.3e+02 Score=28.14 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=51.0
Q ss_pred CCCCCCceEEEECCC-ccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCC---CC-c-cCCCccceEE
Q 012235 313 IKPGETRIGLDFGVG-TGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ---RL-P-FFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCG-tG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~---~L-p-f~d~sFDlVi 384 (467)
+.+++ +||=.|+| .|..+..+++. | .+|+.+ +.++...+.+.+-+...++..... .+ . .....+|+|+
T Consensus 165 ~~~~~--~vlI~g~~~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvl 240 (340)
T cd05284 165 LDPGS--TVVVIGVGGLGHIAVQILRALTPATVIAV--DRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVI 240 (340)
T ss_pred CCCCC--EEEEEcCcHHHHHHHHHHHHhCCCcEEEE--eCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEE
Confidence 34454 67777744 33444445544 6 777774 334444555554443222221111 01 0 1234689888
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
....- ...+.+..+.|+++|.++...
T Consensus 241 d~~g~---------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 241 DFVGS---------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EcCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 64332 246788889999999988653
No 440
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=35.35 E-value=28 Score=37.48 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=47.7
Q ss_pred ccCCchhhhcccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH
Q 012235 281 KCTGCFEMDKEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359 (467)
Q Consensus 281 ~C~~cfdm~~e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~ 359 (467)
.|.-|||. ..-+|..+-..... .+.. -+++|+ .|-|+-||.|-++..++..+..|++ -|+..++++....
T Consensus 220 ~~~Fk~Df--skVYWnsRL~~Ehe-rlsg--~fk~ge--vv~D~FaGvGPfa~Pa~kK~crV~a--NDLNpesik~Lk~ 289 (495)
T KOG2078|consen 220 GERFKFDF--SKVYWNSRLSHEHE-RLSG--LFKPGE--VVCDVFAGVGPFALPAAKKGCRVYA--NDLNPESIKWLKA 289 (495)
T ss_pred CeeEEEec--ceEEeeccchhHHH-HHhh--ccCCcc--hhhhhhcCcCccccchhhcCcEEEe--cCCCHHHHHHHHH
Confidence 55556655 44558763222111 1222 256777 8899999999999999999999998 6777777776654
No 441
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=34.99 E-value=85 Score=33.67 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=55.4
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCC------CCcc-----CCCccceEEec
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ------RLPF-----FDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~------~Lpf-----~d~sFDlVis~ 386 (467)
+|-=||-|. | ..+..+++ +++|+++|+| +..++.+. .|..++...... .+.+ .-..-|+|+..
T Consensus 8 kI~vIGlGyvGlpmA~~la~-~~~V~g~D~~--~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 8 KIAIIGLGYVGLPLAVEFGK-SRQVVGFDVN--KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred eEEEECcCcchHHHHHHHhc-CCEEEEEeCC--HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 344555553 2 23333443 6899995554 55566665 333221110000 0100 02345766643
Q ss_pred cc-cccc---cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 387 GF-MDGW---LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 387 ~~-L~h~---~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
-. ..+- .+-..+......+.+.|++|..+++.+-..+....+.....+++
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHh
Confidence 22 2111 22233455567888999998877776655555444444455554
No 442
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.93 E-value=3.3e+02 Score=25.37 Aligned_cols=99 Identities=14% Similarity=-0.036 Sum_probs=51.8
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHH----HHcCCccEEEccCCCCc-----c-----CCCccce
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMI----ALRGLIPLYVTLNQRLP-----F-----FDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a----~~rg~i~~~~~d~~~Lp-----f-----~d~sFDl 382 (467)
+||=.|++.| .++..+++.|.+|++++-+ ....+.+ ...+.+.++.+|..+.. + .-+.+|.
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN--ENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 7888988654 3555566679999985543 3333322 22234566666655321 0 0134687
Q ss_pred EEeccccccccch---h-----------hHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDM---L-----------LLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~---~-----------~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++.+......... + ..-.+++.+...++++|.+++...
T Consensus 85 ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 85 LVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 7765542110000 0 011234555566778888777543
No 443
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=34.89 E-value=1.7e+02 Score=28.88 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=50.9
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC---CCC-ccCCCccceEEeccccccc
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN---QRL-PFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~---~~L-pf~d~sFDlVis~~~L~h~ 392 (467)
+||=.|+ +.|..+..+++. |.+|+.+ +.++...+.+.+.+.-.++.... +.+ ....+.+|+|+....-
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~--- 223 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVAS--TGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG--- 223 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEE--ecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH---
Confidence 6777776 345565666654 8888774 44455566665555311211110 000 1123458887754321
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..+.+..+.|+++|.++....
T Consensus 224 -------~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 224 -------KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -------HHHHHHHHHhhcCCEEEEEee
Confidence 357788999999999988653
No 444
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.77 E-value=4.2e+02 Score=26.38 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=51.2
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCC----Cc--cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQR----LP--FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~----Lp--f~d~sFD 381 (467)
..+.+++ +||=.|+| .|..+..+++. |.. +++ ++.++...+.+.+.+...++...... +. .....+|
T Consensus 164 ~~~~~g~--~vlI~g~g~vg~~~~~lak~~G~~~v~~--~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d 239 (345)
T cd08287 164 AGVRPGS--TVVVVGDGAVGLCAVLAAKRLGAERIIA--MSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGAD 239 (345)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCC
Confidence 3455554 55557764 23444555554 775 666 44444444555554531222211111 10 1234588
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ...+..+.+.|+++|.++...
T Consensus 240 ~il~~~g~---------~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 240 AVLECVGT---------QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred EEEECCCC---------HHHHHHHHHhhccCCEEEEec
Confidence 88754321 257888999999999988754
No 445
>PRK03762 hypothetical protein; Provisional
Probab=34.58 E-value=48 Score=28.70 Aligned_cols=28 Identities=11% Similarity=0.404 Sum_probs=22.8
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 012235 60 YDGFDIRALSDRVGEVLNRMESLQDKLE 87 (467)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (467)
+||+|+.-+.++...+=.+|++.|++|+
T Consensus 2 ~~~m~~~~m~kqaqkmQ~km~~~Q~el~ 29 (103)
T PRK03762 2 FENMDFSKLGEMLEQMQKKAKQLEEENA 29 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999998888887777777777777
No 446
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=33.22 E-value=1.8e+02 Score=31.37 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=39.0
Q ss_pred ceEEEECCC-cc-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVG-TG-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCG-tG-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
++||=||.| .| ..+.+|+++|+..+.+.--.-..+.+.+.+-+ ........++-.-..+|+|+++-+-
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---AEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---CeeecHHHHHHhhhhCCEEEEecCC
Confidence 389999999 67 45667777886655443222233444444434 1222233333334679999987543
No 447
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.92 E-value=3.4e+02 Score=26.69 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=51.2
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC---ccCCCccceEE
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL---PFFDNTMDLIH 384 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L---pf~d~sFDlVi 384 (467)
..+.+++ +||=.|+ +.|..+..+++. |..|+.+. . +...+.+.+.+. ..+....... ....+.+|+|+
T Consensus 135 ~~~~~g~--~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~--~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~d~vl 208 (331)
T cd08273 135 AKVLTGQ--RVLIHGASGGVGQALLELALLAGAEVYGTA--S-ERNHAALRELGA-TPIDYRTKDWLPAMLTPGGVDVVF 208 (331)
T ss_pred cCCCCCC--EEEEECCCcHHHHHHHHHHHHcCCEEEEEe--C-HHHHHHHHHcCC-eEEcCCCcchhhhhccCCCceEEE
Confidence 3455665 7777775 344555556554 88887754 2 444555544442 1111111111 12234688887
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
....- ..+....+.|+++|.++..
T Consensus 209 ~~~~~----------~~~~~~~~~l~~~g~~v~~ 232 (331)
T cd08273 209 DGVGG----------ESYEESYAALAPGGTLVCY 232 (331)
T ss_pred ECCch----------HHHHHHHHHhcCCCEEEEE
Confidence 54332 2367788899999998764
No 448
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.85 E-value=74 Score=29.40 Aligned_cols=24 Identities=25% Similarity=0.648 Sum_probs=10.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHH
Q 012235 61 DGFDIRALSDRVGEVLNRMESLQDKLE 87 (467)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (467)
+|-|+.. .+....++++++++.++
T Consensus 40 ~~~~lE~---~l~~~~~~~~~~~~~~~ 63 (151)
T PF14584_consen 40 DGKNLED---LLNELFDQIDELKEELE 63 (151)
T ss_pred CcccHHH---HHHHHHHHHHHHHHHHH
Confidence 4444444 33444444444444443
No 449
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=30.91 E-value=60 Score=33.23 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec-c--c-CCCCH----HHHHHHHHHcCceee
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF-F--C-NKKDL----DDYMYMFLQFRYKKH 442 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~-~--~-~~~~~----~~~~~~i~~~Gf~~l 442 (467)
.+-||+|+.+....|...+ ++.++++|||.|++-+. + . .+++. +.+.++.+..||+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 5789999988877676665 37789999999999663 1 1 12222 255666677777654
No 450
>PRK14974 cell division protein FtsY; Provisional
Probab=30.59 E-value=4.9e+02 Score=27.12 Aligned_cols=69 Identities=7% Similarity=-0.040 Sum_probs=39.1
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
..+|+|+...+- ....+..+-.-|..+.++++|...+++.+-....+..+......+..+...+-+...
T Consensus 221 ~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred CCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeee
Confidence 458988876553 222232234556778888999988777665443333333333334566666655443
No 451
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.46 E-value=2.2e+02 Score=23.76 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=58.6
Q ss_pred eEEEECCCcc--HHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGTG--TFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGtG--~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|.=||+|.. .+...+.+. +..++++ .|.++...+.+.+...++ ...+.+.+. .+...|+|+....-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v-~d~~~~~~~~~~~~~~~~-~~~~~~~ll-~~~~~D~V~I~tp~~----- 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAV-CDPDPERAEAFAEKYGIP-VYTDLEELL-ADEDVDAVIIATPPS----- 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEE-ECSSHHHHHHHHHHTTSE-EESSHHHHH-HHTTESEEEEESSGG-----
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEE-EeCCHHHHHHHHHHhccc-chhHHHHHH-HhhcCCEEEEecCCc-----
Confidence 4566888765 223334433 5666664 566776666665555455 444444432 234789988655441
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCC-CHHHHHHHHHHcC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKK-DLDDYMYMFLQFR 438 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-~~~~~~~~i~~~G 438 (467)
.-..-+.+.|+-|-.+++.-+..... +...+.+..++.|
T Consensus 74 ----~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 74 ----SHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ----GHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 23344556666677777766655432 2235555555543
No 452
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=30.39 E-value=2.2e+02 Score=26.72 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC---ccEEEccCCCCcc-CCCccceEEeccccccccchhhHHHHHHHHH
Q 012235 331 FAARMREQNVTIVSTALNLGAPFNEMIALRGL---IPLYVTLNQRLPF-FDNTMDLIHTTGFMDGWLDMLLLDFILFDWD 406 (467)
Q Consensus 331 ~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~---i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h~~~~~~l~~~L~el~ 406 (467)
++..+...|..|.++. +.. ...||. ..+..++-..-|. +.+..|++++.... .+....
T Consensus 22 l~~a~~~~G~~v~~~~-~~g------~~~RGG~~~s~vRi~~~~~~~~~~~~~~D~lva~d~~-----------~~~~~~ 83 (197)
T PRK06274 22 LANAAMNEGFHVRTAE-TLG------MSQREGSVISHLRFGDEISSPLIPEGQADLLLALEPA-----------EVARNL 83 (197)
T ss_pred HHHHHHHcCCCeEecc-ccC------chhhCCeEEEEEEEcCccCCCccCCCCCCEEEEcCHH-----------HHHHHH
Confidence 3444455588887632 111 233443 2233343222333 25789999987654 234455
Q ss_pred hccCCCcEEEEEe
Q 012235 407 RILRPGGLLWIDR 419 (467)
Q Consensus 407 RvLKPGG~LiI~~ 419 (467)
..|+|||++++.+
T Consensus 84 ~~l~~gg~ii~ns 96 (197)
T PRK06274 84 HFLKKGGKIIVNA 96 (197)
T ss_pred hhcCCCcEEEEEC
Confidence 6799999999875
No 453
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.37 E-value=6.2e+02 Score=26.03 Aligned_cols=67 Identities=10% Similarity=-0.039 Sum_probs=32.1
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhcc------CCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRIL------RPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvL------KPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
.+.||+|+...+-....+. .+-.-+..+.+++ .|.+.+++.+-....+.........+.++...+=+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEE
Confidence 3568888876554222222 1223444454443 36776666555544444434333334444444433
No 454
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=30.32 E-value=3.2e+02 Score=26.92 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=50.0
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEcc-----CCCCccCCCccce
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTL-----NQRLPFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-----~~~Lpf~d~sFDl 382 (467)
..+.+++ +||=+|+ +.|..+..+++. |..++.++- .+.+.+-+.-.++... ..++ . +.+|+
T Consensus 158 ~~~~~g~--~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~------~~~~~~~g~~~~~~~~~~~~~l~~~--~-~~~d~ 226 (325)
T cd08264 158 AGLGPGE--TVVVFGASGNTGIFAVQLAKMMGAEVIAVSR------KDWLKEFGADEVVDYDEVEEKVKEI--T-KMADV 226 (325)
T ss_pred cCCCCCC--EEEEECCCchHHHHHHHHHHHcCCeEEEEeH------HHHHHHhCCCeeecchHHHHHHHHH--h-CCCCE
Confidence 4456666 7787886 345555555554 888877531 1333333321111111 1111 1 45888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.... ...+.+..+.|+++|.++...
T Consensus 227 vl~~~g----------~~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 227 VINSLG----------SSFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred EEECCC----------HHHHHHHHHhhccCCEEEEEe
Confidence 875422 136788999999999998754
No 455
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=30.03 E-value=59 Score=35.40 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=36.1
Q ss_pred EEEE-CCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCC
Q 012235 321 GLDF-GVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRL 373 (467)
Q Consensus 321 VLDI-GCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~L 373 (467)
.+=| |.|-+.+|..|.++|++|.|.|+..++ +.+.+.+.|. .++.+ +.+++
T Consensus 12 fIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~-~t~~L~~~G~-~i~~gh~~~ni 64 (459)
T COG0773 12 FIGIGGIGMSGLAEILLNLGYKVSGSDLAESP-MTQRLEALGI-EIFIGHDAENI 64 (459)
T ss_pred EEeeccccHHHHHHHHHhCCCceECccccccH-HHHHHHHCCC-eEeCCCCHHHc
Confidence 3444 456668999999999999998888777 7788887774 44443 44433
No 456
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.72 E-value=1.6e+02 Score=33.09 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=13.8
Q ss_pred HcCCccEEEccCCCCccC
Q 012235 359 LRGLIPLYVTLNQRLPFF 376 (467)
Q Consensus 359 ~rg~i~~~~~d~~~Lpf~ 376 (467)
+-|.++++.++...+|+.
T Consensus 444 ~~GavPviLg~~~~LPyq 461 (907)
T KOG2264|consen 444 QLGAVPVILGNSQLLPYQ 461 (907)
T ss_pred hcCCeeEEeccccccchH
Confidence 346688888888888874
No 457
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=29.72 E-value=4.2e+02 Score=25.53 Aligned_cols=95 Identities=18% Similarity=0.003 Sum_probs=50.2
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||=.|+ |.|..+..++.. |..++.+. .+....+.+...+.-.++......+. ...+.+|
T Consensus 135 ~~~~~~~--~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 210 (325)
T TIGR02824 135 GGLKAGE--TVLIHGGASGIGTTAIQLAKAFGARVFTTA--GSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVD 210 (325)
T ss_pred cCCCCCC--EEEEEcCcchHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeE
Confidence 3455555 6666664 445555555543 88887743 34444444544442111111111110 1224588
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++....- ..+.+..+.++++|.++...
T Consensus 211 ~~i~~~~~----------~~~~~~~~~l~~~g~~v~~g 238 (325)
T TIGR02824 211 VILDIVGG----------SYLNRNIKALALDGRIVQIG 238 (325)
T ss_pred EEEECCch----------HHHHHHHHhhccCcEEEEEe
Confidence 88865331 24666778899999988653
No 458
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=29.44 E-value=80 Score=27.07 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012235 70 DRVGEVLNRMESLQDKLEKTVQQLEK 95 (467)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
+-|+-||++|.+--+|+|+.+.|||-
T Consensus 18 dLvesVlr~lseaa~kweaLvaeae~ 43 (109)
T PF10921_consen 18 DLVESVLRELSEAADKWEALVAEAET 43 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45999999999999999999999993
No 459
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.21 E-value=93 Score=32.58 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=55.3
Q ss_pred cCCCCCCceEEEEC-CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHH-HHcCCccEEEcc--CCCCccCCCccceEEec
Q 012235 312 AIKPGETRIGLDFG-VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMI-ALRGLIPLYVTL--NQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIG-CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a-~~rg~i~~~~~d--~~~Lpf~d~sFDlVis~ 386 (467)
.+.+|. .|-=+| +|-|.++..+++. |..|++ +|-+....+.+ ..-|.-.|+... -....-..++.|.++-.
T Consensus 178 g~~pG~--~vgI~GlGGLGh~aVq~AKAMG~rV~v--is~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~ 253 (360)
T KOG0023|consen 178 GLGPGK--WVGIVGLGGLGHMAVQYAKAMGMRVTV--ISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDT 253 (360)
T ss_pred CCCCCc--EEEEecCcccchHHHHHHHHhCcEEEE--EeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCccee
Confidence 455665 433333 4589999999987 999999 66554333333 334432233321 11111112344443321
Q ss_pred -cccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 387 -GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 387 -~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..+ . +..+..+.+.||++|.+++.....
T Consensus 254 v~~~---a-----~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 254 VSNL---A-----EHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeec---c-----ccchHHHHHHhhcCCEEEEEeCcC
Confidence 111 0 246778889999999999876544
No 460
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=29.00 E-value=4.7e+02 Score=24.44 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=50.8
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCC--ccEEEccCCCCc------cCCCc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGL--IPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~--i~~~~~d~~~Lp------f~d~s 379 (467)
..+.+++ +||=.|+ +.|..+..+++. |..++.+ ..+....+.+...+. ..++......+. .....
T Consensus 104 ~~~~~g~--~vlv~g~~g~~g~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
T cd05195 104 ARLQKGE--SVLIHAAAGGVGQAAIQLAQHLGAEVFAT--VGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRG 179 (293)
T ss_pred hccCCCC--EEEEecCCCHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCC
Confidence 4456666 6776653 455566666654 8887774 333444555544431 111111110110 11345
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+++....- ..+....+.|+++|.++..
T Consensus 180 ~d~vi~~~~~----------~~~~~~~~~l~~~g~~v~~ 208 (293)
T cd05195 180 VDVVLNSLSG----------ELLRASWRCLAPFGRFVEI 208 (293)
T ss_pred ceEEEeCCCc----------hHHHHHHHhcccCceEEEe
Confidence 8888743321 2577788999999998764
No 461
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.69 E-value=1.9e+02 Score=25.36 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=50.6
Q ss_pred EEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc---------CCCC-ccCCCccceEEecccc
Q 012235 322 LDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL---------NQRL-PFFDNTMDLIHTTGFM 389 (467)
Q Consensus 322 LDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---------~~~L-pf~d~sFDlVis~~~L 389 (467)
+=+|+|. | .++..|++.|.+|.. +.-.+ ..+...+.+. .+...+ .... +.....+|+|+..-=-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l--~~r~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTL--VSRSP-RLEAIKEQGL-TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEE--EESHH-HHHHHHHHCE-EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred EEECcCHHHHHHHHHHHHCCCceEE--EEccc-cHHhhhheeE-EEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 4467774 3 677777778999888 44334 4444555542 111111 0011 1246789998865321
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
...+.++..+.+.+.|+..+++
T Consensus 78 ------~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 78 ------YQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp ------GGHHHHHHHHCTGEETTEEEEE
T ss_pred ------cchHHHHHHHhhccCCCcEEEE
Confidence 0135789999999999977665
No 462
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=28.58 E-value=3.7e+02 Score=29.06 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=61.2
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEE-------------------ccCCCCccCCC
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYV-------------------TLNQRLPFFDN 378 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~-------------------~d~~~Lpf~d~ 378 (467)
+|==+|=|. | -.+..++++|..|+|+|+| +..++.+..- ...... .|...+ .
T Consensus 11 ~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn--~~~Vd~ln~G-~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l----~ 83 (436)
T COG0677 11 TIGVIGLGYVGLPLAAAFASAGFKVIGVDIN--QKKVDKLNRG-ESYIEEPDLDEVVKEAVESGKLRATTDPEEL----K 83 (436)
T ss_pred EEEEEccccccHHHHHHHHHcCCceEeEeCC--HHHHHHHhCC-cceeecCcHHHHHHHHHhcCCceEecChhhc----c
Confidence 455566554 2 3566677789999996655 4444444321 111110 111111 1
Q ss_pred ccceEE-ecccc---ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 379 TMDLIH-TTGFM---DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 379 sFDlVi-s~~~L---~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
.-|+++ |.-+. .+-++-..++.+.+.+.++||+|-.+++-+-..+....+....+++.
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 334433 32222 12334444578889999999999998887766666555555556665
No 463
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=28.16 E-value=1.2e+02 Score=27.28 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred eEEEECCCcc-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTG-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|+++|-|.= ..|..|.++|+.|+++|++.. .+. ..++++..|..+-... =...|+|.|.....-
T Consensus 16 kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-----~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~E------ 82 (127)
T PF03686_consen 16 KIVEVGIGFNPEVAKKLKERGFDVIATDINPR-----KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRPPPE------ 82 (127)
T ss_dssp EEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-----------STTEE---SSS--HHHHTTEEEEEEES--TT------
T ss_pred cEEEECcCCCHHHHHHHHHcCCcEEEEECccc-----ccc--cCcceeeecccCCCHHHhcCCcEEEEeCCChH------
Confidence 8999999976 677888888999999777654 122 3378888887763211 135789998876521
Q ss_pred HHHHHHHHHhccCCCcEEEEEeccc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+...+.++.+-+ |.-++|..+..
T Consensus 83 l~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 83 LQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp SHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred HhHHHHHHHHHh--CCCEEEECCCC
Confidence 234555555543 45667755543
No 464
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.09 E-value=3.2e+02 Score=28.81 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=58.5
Q ss_pred cChHHHHHHHhcCCCCCCceEEEECCCcc----HHHHHHhhC--C---CEEEEEecCC--CHHHHHHH--------HHcC
Q 012235 301 VPVDFLISDILAIKPGETRIGLDFGVGTG----TFAARMREQ--N---VTIVSTALNL--GAPFNEMI--------ALRG 361 (467)
Q Consensus 301 ~~~d~~I~~lL~l~~g~~r~VLDIGCGtG----~~a~~La~~--g---~~V~gvdiDi--S~~~l~~a--------~~rg 361 (467)
..+...|.+.+.-.. .-+|+|+|.|.| .+-..|+.+ | ..+++++... +...++.+ +.-|
T Consensus 96 ~taNqaIleA~~g~~--~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lg 173 (374)
T PF03514_consen 96 FTANQAILEAFEGER--RVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLG 173 (374)
T ss_pred hchhHHHHHHhccCc--ceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 334444555444332 237999999999 566677766 2 3566644411 33333332 2334
Q ss_pred C-ccEEE---ccCCCC-----ccCCCccceEEeccccccccch----hhHHHHHHHHHhccCCCcEEEE
Q 012235 362 L-IPLYV---TLNQRL-----PFFDNTMDLIHTTGFMDGWLDM----LLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 362 ~-i~~~~---~d~~~L-----pf~d~sFDlVis~~~L~h~~~~----~~l~~~L~el~RvLKPGG~LiI 417 (467)
. ..|.. ...+.+ ...++..=+|-|.+.++|..+. ......+-...|-|+|.-..++
T Consensus 174 v~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 174 VPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred ccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 3 22222 222222 2223333344466667666521 1123456677788999966555
No 465
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=27.80 E-value=4.3e+02 Score=27.15 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=50.2
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc-CC-CC-----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL-NQ-RL-----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~~-~L-----pf~d~sF 380 (467)
..+.+++ +||=+|+|. |..+..+++. |. .|+.+ +.+....+.+.+-|.-.++... .. +. ....+.+
T Consensus 186 ~~~~~g~--~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~--~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~ 261 (373)
T cd08299 186 AKVTPGS--TCAVFGLGGVGLSAIMGCKAAGASRIIAV--DINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGV 261 (373)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCC
Confidence 4456666 777777642 3333444443 77 68774 4455566666555531222111 00 00 1112468
Q ss_pred ceEEeccccccccchhhHHHHHHH-HHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFD-WDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~e-l~RvLKPGG~LiI~~~ 420 (467)
|+|+-...- ...+.+ +..++++||.++....
T Consensus 262 d~vld~~g~---------~~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 262 DFSFEVIGR---------LDTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred eEEEECCCC---------cHHHHHHHHhhccCCCEEEEEcc
Confidence 888764332 134555 4445678899887654
No 466
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=27.58 E-value=4.8e+02 Score=24.83 Aligned_cols=94 Identities=17% Similarity=0.075 Sum_probs=50.9
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFD 381 (467)
..+.+++ +||=.|. +.|..+..+++. |..++. ++.+....+.+...+.-.++......+ -...+.+|
T Consensus 116 ~~~~~g~--~vli~~~~~~~g~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d 191 (303)
T cd08251 116 AGLAKGE--HILIQTATGGTGLMAVQLARLKGAEIYA--TASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVD 191 (303)
T ss_pred cCCCCCC--EEEEecCCcHHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCce
Confidence 4455565 5554443 344455555554 888887 444455555565444322222211111 01234688
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+++.... ...+.+..+.|+++|.++..
T Consensus 192 ~v~~~~~----------~~~~~~~~~~l~~~g~~v~~ 218 (303)
T cd08251 192 VVINTLS----------GEAIQKGLNCLAPGGRYVEI 218 (303)
T ss_pred EEEECCc----------HHHHHHHHHHhccCcEEEEE
Confidence 8875432 13566778999999998864
No 467
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=27.33 E-value=5.7e+02 Score=25.59 Aligned_cols=110 Identities=16% Similarity=0.047 Sum_probs=56.9
Q ss_pred EEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 321 GLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 321 VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
|-=||+|. ..++..|++.|..|+.+ |.++...+.+.+.+. .. ..+...+.-....-|+|+..-.- ....
T Consensus 3 Ig~IGlG~MG~~mA~~L~~~g~~v~v~--dr~~~~~~~~~~~g~-~~-~~~~~e~~~~~~~~dvvi~~v~~-----~~~~ 73 (301)
T PRK09599 3 LGMIGLGRMGGNMARRLLRGGHEVVGY--DRNPEAVEALAEEGA-TG-ADSLEELVAKLPAPRVVWLMVPA-----GEIT 73 (301)
T ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEE--ECCHHHHHHHHHCCC-ee-cCCHHHHHhhcCCCCEEEEEecC-----CcHH
Confidence 44577775 35777788889999884 555555555555442 11 11211111000124777664322 2123
Q ss_pred HHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 399 DFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 399 ~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+.++..+...|++|.. +++.-.........+.+.++..|..
T Consensus 74 ~~v~~~l~~~l~~g~i-vid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 74 DATIDELAPLLSPGDI-VIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred HHHHHHHHhhCCCCCE-EEeCCCCChhHHHHHHHHHHHcCCE
Confidence 5667778888888754 4433222222233555666666543
No 468
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=27.20 E-value=5.6e+02 Score=24.54 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=49.5
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
..+.+++ +||=.|+ |.|..+..+++ .|.+++.++ .++...+.+.+.+.-.++....... . ...+.+|
T Consensus 140 ~~~~~g~--~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 215 (325)
T cd08253 140 AGAKAGE--TVLVHGGSGAVGHAAVQLARWAGARVIATA--SSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVD 215 (325)
T ss_pred hCCCCCC--EEEEEcCCchHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceE
Confidence 4455565 7777775 34444444444 388887743 3444455554444211221111110 0 1234689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+....- ..+....+.++++|.++..
T Consensus 216 ~vi~~~~~----------~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd08253 216 VIIEVLAN----------VNLAKDLDVLAPGGRIVVY 242 (325)
T ss_pred EEEECCch----------HHHHHHHHhhCCCCEEEEE
Confidence 98864332 2345556888999988754
No 469
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=27.11 E-value=46 Score=34.39 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
..++.+|..+..+|+|||.+++.+|..-++. -+.+.+...
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDR--iVK~~f~~~ 257 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDR--IVKQFFREL 257 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHH--HHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhH--HHHHHHHHh
Confidence 3467899999999999999999998765432 344555543
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.89 E-value=2.3e+02 Score=28.73 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=46.7
Q ss_pred ceEEEECCCcc--HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTG--TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG--~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
++|+=+|.|.- ..+..+...|.+|+.++. +....+.+...+. .+. ....+.-.-..+|+|+..-..
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r--~~~~~~~~~~~G~-~~~--~~~~l~~~l~~aDiVI~t~p~------- 220 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGAR--KSAHLARITEMGL-SPF--HLSELAEEVGKIDIIFNTIPA------- 220 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCC-eee--cHHHHHHHhCCCCEEEECCCh-------
Confidence 48999998753 233344445888888544 4444555554442 221 111222122468999986322
Q ss_pred hHHHHHHHHHhccCCCcEEE
Q 012235 397 LLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~Li 416 (467)
..+-.++.+.++||+.++
T Consensus 221 --~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 --LVLTKEVLSKMPPEALII 238 (296)
T ss_pred --hhhhHHHHHcCCCCcEEE
Confidence 123356677889987654
No 471
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=26.89 E-value=4.6e+02 Score=26.31 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=50.6
Q ss_pred HhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC----c--cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL----P--FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L----p--f~d~sF 380 (467)
...+.+++ +||=.|+| .|..+..+++. |.. +++ .+.++...+.+.+.+.-.++......+ . .....+
T Consensus 169 ~~~~~~g~--~vlI~g~g~vG~~~~~~a~~~G~~~v~~--~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~v 244 (350)
T cd08256 169 RANIKFDD--VVVLAGAGPLGLGMIGAARLKNPKKLIV--LDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGC 244 (350)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--EcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCC
Confidence 34455555 55545543 33444455544 655 445 454555555555555311221111111 0 122358
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+....- ...+.++.+.|+++|.++...
T Consensus 245 dvvld~~g~---------~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 245 DIYIEATGH---------PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred CEEEECCCC---------hHHHHHHHHHhhcCCEEEEEc
Confidence 988864321 135778899999999987753
No 472
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=26.74 E-value=1.3e+02 Score=31.41 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=59.3
Q ss_pred eEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|.=||.|. |+.++.++-- |.+|+- +|.+.+-+++.... +.+...-.....+.-.-...|+|+..-.+-.-..+
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vti--ld~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTI--LDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEE--EecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 567788885 7888888765 888888 55555555555443 23455555544444334578998875444222222
Q ss_pred hhHHHHHHHHHhccCCCcEEE
Q 012235 396 LLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~Li 416 (467)
.-+.+++...+|||+.++
T Consensus 248 ---kLvt~e~vk~MkpGsViv 265 (371)
T COG0686 248 ---KLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ---eehhHHHHHhcCCCcEEE
Confidence 467889999999999764
No 473
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=26.71 E-value=6.4e+02 Score=25.00 Aligned_cols=94 Identities=16% Similarity=0.057 Sum_probs=50.0
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
...+++ +||=.|+| .|..+..+++. |. .++.+ +.++.....+.+-|.. .+......+. ...+.+|+
T Consensus 164 ~~~~~~--~vlI~g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~dv 238 (344)
T cd08284 164 QVRPGD--TVAVIGCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAE-PINFEDAEPVERVREATEGRGADV 238 (344)
T ss_pred CCccCC--EEEEECCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCe-EEecCCcCHHHHHHHHhCCCCCCE
Confidence 344454 66666643 22333444443 75 67774 4444444555544421 2222211110 12356898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+....- ...+.+..+.|+++|.++...
T Consensus 239 vid~~~~---------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 239 VLEAVGG---------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEECCCC---------HHHHHHHHHhcccCCEEEEEC
Confidence 8864332 246788899999999987643
No 474
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.65 E-value=4.1e+02 Score=25.40 Aligned_cols=68 Identities=15% Similarity=0.020 Sum_probs=40.1
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCCccEEEccCCCCcc---------CCCccceE
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIAL----RGLIPLYVTLNQRLPF---------FDNTMDLI 383 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~i~~~~~d~~~Lpf---------~d~sFDlV 383 (467)
++|=.|++.| .++..++++|.+|+.++-+ ...++.+.. .+.+.++..|..+..- .-+..|.|
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGARLLLVGRN--AEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 6788887665 4666777789999985543 333333322 1235566666554320 01457888
Q ss_pred Eecccc
Q 012235 384 HTTGFM 389 (467)
Q Consensus 384 is~~~L 389 (467)
+.+...
T Consensus 85 v~~ag~ 90 (263)
T PRK09072 85 INNAGV 90 (263)
T ss_pred EECCCC
Confidence 877554
No 475
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=26.57 E-value=96 Score=32.56 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=45.7
Q ss_pred eEEEECCC-ccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEE--EccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVG-TGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLY--VTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCG-tG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~--~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|+=+|+| .|..+...+. .|..|+.+|. .....+.+.......+. ..+...+.-.-..+|+|+..-....-..+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~--~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDI--NIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEEC--CHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCC
Confidence 68888888 3455555444 3888888554 44444444333211111 11111111112468999975422000001
Q ss_pred hhHHHHHHHHHhccCCCcEEEE
Q 012235 396 LLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI 417 (467)
..+-.++.+.+|||+.++-
T Consensus 247 ---~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 247 ---KLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ---cCcCHHHHhcCCCCCEEEE
Confidence 1123555577899987654
No 476
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=26.48 E-value=7.9e+02 Score=26.00 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=69.6
Q ss_pred HHHHHhcCCC---CCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCH--HHHHHHHHcCC---ccEEEccCCC---
Q 012235 306 LISDILAIKP---GETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGA--PFNEMIALRGL---IPLYVTLNQR--- 372 (467)
Q Consensus 306 ~I~~lL~l~~---g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~--~~l~~a~~rg~---i~~~~~d~~~--- 372 (467)
+|.++|.-.. +.+++.+|||.|+--+-..+..+ ++...++++|... .+-..+.+.++ +.+++.....
T Consensus 88 wI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll 167 (419)
T KOG2912|consen 88 WIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL 167 (419)
T ss_pred HHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcc
Confidence 4667775332 33455899999887555544443 6777787777432 11122223332 3333321111
Q ss_pred ---Cc-cCCCccceEEeccccc-ccc----------------------------chhhHHHHHHHH-HhccCCCcEEEEE
Q 012235 373 ---LP-FFDNTMDLIHTTGFMD-GWL----------------------------DMLLLDFILFDW-DRILRPGGLLWID 418 (467)
Q Consensus 373 ---Lp-f~d~sFDlVis~~~L~-h~~----------------------------~~~~l~~~L~el-~RvLKPGG~LiI~ 418 (467)
+. .++..||.+.|+-.+. |.. +-.....+.+-+ ++.+-..+.=|.+
T Consensus 168 ~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT 247 (419)
T KOG2912|consen 168 MDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYT 247 (419)
T ss_pred hhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEe
Confidence 11 1245699999886552 100 000001111111 1122123344556
Q ss_pred ecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 419 RFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
.+......+..+++.+.+.|-.++...
T Consensus 248 ~MlGKKsslk~l~~kL~e~gv~kv~it 274 (419)
T KOG2912|consen 248 CMLGKKSSLKPLISKLREQGVTKVKIT 274 (419)
T ss_pred eecccccccHHHHHHHHHcCCceEEEE
Confidence 666666677777888888876655543
No 477
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.34 E-value=66 Score=24.76 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcCcCc
Q 012235 15 MAWLQLVLGGLVIVVSISSLFRFYAAGFFM 44 (467)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (467)
-.|++|++.+.||+-|+++|= ||+.+.+
T Consensus 4 ~~wlIIviVlgvIigNia~LK--~sAk~K~ 31 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK--YSAKMKF 31 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH--HhcccCC
Confidence 468888888889988988873 4444333
No 478
>PRK12742 oxidoreductase; Provisional
Probab=26.08 E-value=5.3e+02 Score=23.90 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=50.5
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----c-CCCccceEEeccccc
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----F-FDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f-~d~sFDlVis~~~L~ 390 (467)
+||=.|++.| .++..|+++|..|+.+... +.+..+.+.....+.++..|..+.. . ..+.+|+++.+....
T Consensus 8 ~vlItGasggIG~~~a~~l~~~G~~v~~~~~~-~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~~ 86 (237)
T PRK12742 8 KVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG-SKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAGIA 86 (237)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCC-CHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCCCC
Confidence 7888887555 4556667778888764332 2233333322222445555543321 0 124589888765432
Q ss_pred ccc-----chhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 391 GWL-----DMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
... +.+..+ .+..++.+.++.+|.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 87 VFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred CCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 111 111111 22346666677788877643
No 479
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=25.42 E-value=4e+02 Score=26.44 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=53.2
Q ss_pred HhcCCCCCCceEEEECCC-ccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccC--CCC----ccCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVG-TGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRL----PFFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~L----pf~d~sF 380 (467)
...+.+++ +||=.|+| .|..+..+++. |..++++ +.++...+.+.+-+. ..+.... ..+ --..+.+
T Consensus 157 ~~~~~~g~--~vlV~g~g~vG~~~~~la~~~~g~~v~~~--~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 157 VSGIKPGQ--WIAIYGAGGLGNLALQYAKNVFNAKVIAV--DINDDKLALAKEVGA-DLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred hcCCCCCC--EEEEECCcHHHHHHHHHHHHhCCCeEEEE--eCChHHHHHHHHcCC-cEEecccccccHHHHHHHhcCCC
Confidence 34456665 77777754 35566666663 8888774 455556666655553 2222111 110 0001246
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|.++-...- ...+.+..+.|+++|.++...
T Consensus 232 d~vi~~~~~---------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 232 HAAVVTAVA---------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cEEEEeCCC---------HHHHHHHHHhccCCCEEEEEe
Confidence 743322111 256888999999999988643
No 480
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=25.09 E-value=5.7e+02 Score=25.35 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=51.2
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCC----C-----CccCCC
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQ----R-----LPFFDN 378 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~----~-----Lpf~d~ 378 (467)
..+.+++ +||=.|+| .|..+..+++. |.. ++. .+.++...+.+.+.+...++..... . -....+
T Consensus 157 ~~~~~g~--~VlI~g~g~vg~~~~~la~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd08262 157 ARLTPGE--VALVIGCGPIGLAVIAALKARGVGPIVA--SDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGP 232 (341)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCC
Confidence 3455565 67766643 22333444443 765 444 4555666666655553222221111 0 001234
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.+|+|+....- ...+.+..+.|+++|.++....
T Consensus 233 ~~d~vid~~g~---------~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 233 KPAVIFECVGA---------PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred CCCEEEECCCC---------HHHHHHHHHHhccCCEEEEECC
Confidence 68988854321 1357778889999999887543
No 481
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.08 E-value=52 Score=36.13 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=59.5
Q ss_pred eEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc---C----CccEEEccCCCC----ccCCCccceEEe
Q 012235 320 IGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR---G----LIPLYVTLNQRL----PFFDNTMDLIHT 385 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r---g----~i~~~~~d~~~L----pf~d~sFDlVis 385 (467)
+|||.=|++|.-+.+.+.. | ..|++ .|.+...++.+.++ + .+...++|+..+ +-....||+|..
T Consensus 112 ~vLealsAtGlrslRya~El~~v~~v~A--nD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 112 RVLEALSATGLRSLRYAKELPGVRQVVA--NDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred hHHHHhhhhhHHHHHHHHHhcchhhhcc--cCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 6899999999888888776 3 34555 56666666655432 2 133444554322 333578999985
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.- +... ..+|..+.+.++.||.|.++
T Consensus 190 DP----yGs~---s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 190 DP----YGSP---SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred CC----CCCc---cHHHHHHHHHhhcCCEEEEE
Confidence 32 2222 36899999999999999885
No 482
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.87 E-value=3.3e+02 Score=24.61 Aligned_cols=64 Identities=17% Similarity=0.036 Sum_probs=46.8
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---CHHHHHHHHHHcCceeeEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---~~~~~~~~i~~~Gf~~l~W 444 (467)
+...|.|+..+-- .+..+...|-.+.+.|..+|.+|+.++-..+. +..++.+....+|+...+-
T Consensus 43 ddvvD~vllWwR~----~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~~ 109 (127)
T PF11253_consen 43 DDVVDVVLLWWRD----DDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTKS 109 (127)
T ss_pred cccccEEEEEEEC----CcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeeee
Confidence 5678888765432 23346788999999999999999998765443 3447888888888866544
No 483
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=24.80 E-value=4.6e+02 Score=26.83 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=55.9
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDl 382 (467)
..+.+++ +||=.|+| .|..+..+++. |. .++. ++.++...+.+.+.+. ..+......+ ...++.+|+
T Consensus 172 ~~~~~g~--~vlI~g~g~vg~~~~~~a~~~G~~~vi~--~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~i~~~~~~~~d~ 246 (375)
T cd08282 172 AGVQPGD--TVAVFGAGPVGLMAAYSAILRGASRVYV--VDHVPERLDLAESIGA-IPIDFSDGDPVEQILGLEPGGVDR 246 (375)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCC-eEeccCcccHHHHHHHhhCCCCCE
Confidence 3455565 66667775 24555555544 76 6777 5555666666666553 2221111110 112246898
Q ss_pred EEeccccc---cccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMD---GWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~---h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+....-. ++... .....+.+..++|+++|.+.+...
T Consensus 247 v~d~~g~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 247 AVDCVGYEARDRGGEA-QPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred EEECCCCccccccccc-chHHHHHHHHHHhhcCcEEEEEec
Confidence 88653321 11100 012468889999999999876543
No 484
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=24.72 E-value=1.2e+02 Score=27.66 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 012235 66 RALSDRVGEVLNRMESLQDKLEKT 89 (467)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~ 89 (467)
+++.-+-+.+=++|-++..|+|+.
T Consensus 83 qaL~S~G~sl~~kVtSLea~lEkq 106 (138)
T PF03954_consen 83 QALSSQGGSLQDKVTSLEAKLEKQ 106 (138)
T ss_pred HHHHhccccHHhHcccHHHHHHHH
Confidence 333333333334444444444433
No 485
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.70 E-value=2.1e+02 Score=27.06 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=40.5
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc----------CCCccceEE
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF----------FDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf----------~d~sFDlVi 384 (467)
+++|=.|++.| .++..|+++|+.|+.++-+......+...+.+ .+.++..|..+..- ..+..|.|+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li 85 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILV 85 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 37888888665 46667777799998865432222223333322 35566666554320 114589888
Q ss_pred ecccc
Q 012235 385 TTGFM 389 (467)
Q Consensus 385 s~~~L 389 (467)
.+...
T Consensus 86 ~~ag~ 90 (248)
T TIGR01832 86 NNAGI 90 (248)
T ss_pred ECCCC
Confidence 76543
No 486
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.67 E-value=53 Score=29.14 Aligned_cols=18 Identities=11% Similarity=0.229 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 012235 13 RAMAWLQLVLGGLVIVVS 30 (467)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (467)
||+.++.||.+++++++.
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 455555555444444433
No 487
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=24.63 E-value=4e+02 Score=27.25 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=52.6
Q ss_pred eEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc--------CCCCccCCCccceEEecccc
Q 012235 320 IGLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL--------NQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d--------~~~Lpf~d~sFDlVis~~~L 389 (467)
+|+=+|+|. |.++..|++.|..|+. +--+ +.++...+.|.. +.... ....+.....+|+|+..-=-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~--~~R~-~~~~~l~~~GL~-i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTL--LVRS-RRLEALKKKGLR-IEDEGGNFTTPVVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEE--EecH-HHHHHHHhCCeE-EecCCCccccccccccChhhcCCCCEEEEEecc
Confidence 567788884 5888999998955554 2222 335666666541 11111 11111223468998864321
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+ ..+.++..+...++|...+++
T Consensus 78 --~----q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 78 --Y----QLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred --c----cHHHHHHHhhhcCCCCcEEEE
Confidence 1 136899999999999987665
No 488
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.38 E-value=3.6e+02 Score=21.55 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012235 66 RALSDRVGEVLNRMESLQDKLEKTVQQLE 94 (467)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
+.+...+...-.+++++|.+-+.-..+.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665554444444
No 489
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=24.36 E-value=1.3e+02 Score=28.48 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=33.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhcHHHHHH
Q 012235 62 GFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKN 111 (467)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (467)
-.+..-+.+.++++..+|+++|++|| .|.+--+ -..||+.+|.+
T Consensus 97 k~~~~~~ke~~~~s~~~iq~l~k~le----~v~~~~P--~demT~ed~~e 140 (172)
T KOG3366|consen 97 KAAVKEIKEYESLSKKRIQELEKELE----KVKSARP--FDEMTMEDLNE 140 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCC--cccccHHHHHH
Confidence 34666789999999999999999998 5543112 35688988874
No 490
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=24.34 E-value=6.3e+02 Score=24.11 Aligned_cols=94 Identities=21% Similarity=0.086 Sum_probs=50.0
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFDl 382 (467)
.+.++. +||=.|+ |.|..+..+++ .|..++.+ +.+....+.+...+.-..+......+ . .....+|+
T Consensus 136 ~~~~~~--~vlv~g~~~~ig~~~~~~~~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (323)
T cd05276 136 GLKAGE--TVLIHGGASGVGTAAIQLAKALGARVIAT--AGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDV 211 (323)
T ss_pred CCCCCC--EEEEEcCcChHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEE
Confidence 455555 7777775 34445444444 38887774 33444555554444211111111000 0 11246888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++....- ..+....+.++++|.++...
T Consensus 212 vi~~~g~----------~~~~~~~~~~~~~g~~i~~~ 238 (323)
T cd05276 212 ILDMVGG----------DYLARNLRALAPDGRLVLIG 238 (323)
T ss_pred EEECCch----------HHHHHHHHhhccCCEEEEEe
Confidence 8865432 23556778889999887654
No 491
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=24.34 E-value=2.9e+02 Score=27.69 Aligned_cols=87 Identities=14% Similarity=0.057 Sum_probs=49.4
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceEEecccccc
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlVis~~~L~h 391 (467)
+||=.|+ +.|..+..+++. |..++++. + ....+.+.+.|.-.++......+ ....+.+|+|+....-
T Consensus 157 ~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~--~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~-- 231 (339)
T cd08249 157 PVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S--PKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIST-- 231 (339)
T ss_pred EEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C--cccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeecc--
Confidence 7787775 456666666665 88887754 3 23444554444312222111111 1123568888854321
Q ss_pred ccchhhHHHHHHHHHhccCC--CcEEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRP--GGLLWID 418 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKP--GG~LiI~ 418 (467)
...+.+..+.|++ +|.++..
T Consensus 232 -------~~~~~~~~~~l~~~~~g~~v~~ 253 (339)
T cd08249 232 -------PESAQLCAEALGRSGGGKLVSL 253 (339)
T ss_pred -------chHHHHHHHHHhccCCCEEEEe
Confidence 1367788999999 9987764
No 492
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.14 E-value=2.1e+02 Score=28.50 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=41.0
Q ss_pred ceEEEECCCccHHHHHHhh----CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCC-----------CCccCCCccceE
Q 012235 319 RIGLDFGVGTGTFAARMRE----QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ-----------RLPFFDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~----~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~-----------~Lpf~d~sFDlV 383 (467)
..||=.||..|.++.+|+. .|..|+++.-.. +.|.+.+.+.|+.+ ...|.. --.+++++.|+.
T Consensus 8 k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~-e~M~~L~~~~gl~~-~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 8 KKVLITGCSSGGIGYALAKEFARNGYLVYATARRL-EPMAQLAIQFGLKP-YKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc-chHhhHHHhhCCee-EEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 4799999999987776664 499999865443 34555554544322 222211 112467888888
Q ss_pred Eecc
Q 012235 384 HTTG 387 (467)
Q Consensus 384 is~~ 387 (467)
+.+.
T Consensus 86 ~NNA 89 (289)
T KOG1209|consen 86 YNNA 89 (289)
T ss_pred EcCC
Confidence 8653
No 493
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.10 E-value=5.8e+02 Score=27.39 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=56.6
Q ss_pred CCCCceEEEECCCc-cHHHH-HHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccc
Q 012235 315 PGETRIGLDFGVGT-GTFAA-RMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 315 ~g~~r~VLDIGCGt-G~~a~-~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.+. +|+=+|+|. |...+ .+...|..|+.++.|... ...+...|. . ..+.+.. -...|+|++.-.-
T Consensus 194 ~Gk--~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r--~~~A~~~G~-~--v~~leea---l~~aDVVItaTG~--- 260 (406)
T TIGR00936 194 AGK--TVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIR--ALEAAMDGF-R--VMTMEEA---AKIGDIFITATGN--- 260 (406)
T ss_pred CcC--EEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhh--HHHHHhcCC-E--eCCHHHH---HhcCCEEEECCCC---
Confidence 454 899999996 43333 333348899987766543 233333342 1 1121111 1346888764322
Q ss_pred cchhhHHHHHH-HHHhccCCCcEEEEEecccCCCCHHHHHHHH
Q 012235 393 LDMLLLDFILF-DWDRILRPGGLLWIDRFFCNKKDLDDYMYMF 434 (467)
Q Consensus 393 ~~~~~l~~~L~-el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i 434 (467)
..++. +....+|+|++++...-+...-+.+.+.+..
T Consensus 261 ------~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 ------KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred ------HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 24554 4888999999988866553333444454443
No 494
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=24.08 E-value=1.6e+02 Score=31.22 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=35.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHH
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFN 354 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l 354 (467)
-.+.|++.+++ +||-|..|-......+.+....|++||++..+.++
T Consensus 27 D~~aL~i~~~d--~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aL 72 (380)
T PF11899_consen 27 DMEALNIGPDD--RVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNAL 72 (380)
T ss_pred HHHHhCCCCCC--eEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHH
Confidence 34678898888 99999888777777777777899997777666553
No 495
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.85 E-value=3.5e+02 Score=29.21 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=50.6
Q ss_pred eEEEECCCc-cH-HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGT-GT-FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGt-G~-~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|+=+|+|. |. .+..+...|.+|+.++.|... ...+...|. .+ .+.... -...|+|+..-.-
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r--a~~A~~~G~-~v--~~l~ea---l~~aDVVI~aTG~-------- 277 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC--ALQAAMDGF-RV--MTMEEA---AELGDIFVTATGN-------- 277 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh--hHHHHhcCC-Ee--cCHHHH---HhCCCEEEECCCC--------
Confidence 899999985 32 233344458899986666432 233333332 21 121111 1357999875422
Q ss_pred HHHHHH-HHHhccCCCcEEEEEecccCC
Q 012235 398 LDFILF-DWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 398 l~~~L~-el~RvLKPGG~LiI~~~~~~~ 424 (467)
..++. +..+.+|+|++++....+...
T Consensus 278 -~~vI~~~~~~~mK~GailiNvG~~d~E 304 (425)
T PRK05476 278 -KDVITAEHMEAMKDGAILANIGHFDNE 304 (425)
T ss_pred -HHHHHHHHHhcCCCCCEEEEcCCCCCc
Confidence 23554 788999999998876554433
No 496
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=23.79 E-value=1.9e+02 Score=32.54 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=62.7
Q ss_pred eEEEECCCc-cH-HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-GT-FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G~-~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. |. .+..|.++|..++. +|.+++..+.+++.| .+++.+|..+... .-+..|+|++...
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvv--ID~d~~~v~~~~~~g-~~v~~GDat~~~~L~~agi~~A~~vvv~~~----- 473 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTV--LDHDPDHIETLRKFG-MKVFYGDATRMDLLESAGAAKAEVLINAID----- 473 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEE--EECCHHHHHHHHhcC-CeEEEEeCCCHHHHHhcCCCcCCEEEEEeC-----
Confidence 677777774 43 34455566888888 555667777776665 6788999777542 2246777765432
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+++ ....+-...|-+.|.-.++.-. + + ......+++.|...+
T Consensus 474 d~~-~n~~i~~~ar~~~p~~~iiaRa----~-d-~~~~~~L~~~Gad~v 515 (621)
T PRK03562 474 DPQ-TSLQLVELVKEHFPHLQIIARA----R-D-VDHYIRLRQAGVEKP 515 (621)
T ss_pred CHH-HHHHHHHHHHHhCCCCeEEEEE----C-C-HHHHHHHHHCCCCEE
Confidence 111 1234445666667776655521 1 1 133445555665544
No 497
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.75 E-value=5.3e+02 Score=23.06 Aligned_cols=94 Identities=10% Similarity=0.014 Sum_probs=49.8
Q ss_pred HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhcc
Q 012235 330 TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRIL 409 (467)
Q Consensus 330 ~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvL 409 (467)
.++..+...|++|+..+.+.+.+-+..+..+.. .|+|..+....+.... .+.++.++.+..
T Consensus 22 iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~-----------------~d~V~lS~~~~~~~~~--~~~~~~~L~~~~ 82 (137)
T PRK02261 22 ILDRALTEAGFEVINLGVMTSQEEFIDAAIETD-----------------ADAILVSSLYGHGEID--CRGLREKCIEAG 82 (137)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----------------CCEEEEcCccccCHHH--HHHHHHHHHhcC
Confidence 455566667999998888887655444443322 3444444333222222 345666665553
Q ss_pred CCCcEEEEEe-cccCCCCHHHHHHHHHHcCceee
Q 012235 410 RPGGLLWIDR-FFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 410 KPGG~LiI~~-~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
-++=.+++.- ......++....+.++++||..+
T Consensus 83 ~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 3332333322 12233445567778888887544
No 498
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.67 E-value=4.8e+02 Score=26.64 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=63.6
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHH---HHHHHcC-----CccEEEccCCCC------c---cCCCc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFN---EMIALRG-----LIPLYVTLNQRL------P---FFDNT 379 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l---~~a~~rg-----~i~~~~~d~~~L------p---f~d~s 379 (467)
++.|+-+|||--+-+.++-.. +..|.. +|.-+-+. +...+.+ ...++..|...- + |..+.
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfE--vD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFE--VDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEE--CCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 668999999998887777655 455555 77654332 2223344 244555665422 2 22333
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
--++++-+++ .+.+.+....+|..+.....||-.++...
T Consensus 171 pt~~iaEGLl-~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 171 PTLWIAEGLL-MYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CeEEEecccc-ccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 3456666666 67777778899999999998888776654
No 499
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=23.58 E-value=5.4e+02 Score=26.62 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=52.8
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC----C------------
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR----L------------ 373 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~----L------------ 373 (467)
+.+++ +||=.|+ +.|..+..+++. |..++.+ +.+....+.+.+.+...++...... .
T Consensus 187 ~~~g~--~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 262 (398)
T TIGR01751 187 VKPGD--NVLIWGAAGGLGSYATQLARAGGGNPVAV--VSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWT 262 (398)
T ss_pred CCCCC--EEEEEcCCcHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhh
Confidence 44555 7888886 455566666654 8887763 4455555666555532222111000 0
Q ss_pred ----c--------cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 374 ----P--------FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 374 ----p--------f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. ...+.+|+|+.... ...+....+.|+++|.++...
T Consensus 263 ~~~~~~~~~~~~~~~~~g~d~vld~~g----------~~~~~~~~~~l~~~G~~v~~g 310 (398)
T TIGR01751 263 KSFKRFGKRIRELTGGEDPDIVFEHPG----------RATFPTSVFVCRRGGMVVICG 310 (398)
T ss_pred hcchhHHHHHHHHcCCCCceEEEECCc----------HHHHHHHHHhhccCCEEEEEc
Confidence 0 01245787776432 135777889999999988754
No 500
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=23.45 E-value=3.7e+02 Score=27.12 Aligned_cols=89 Identities=11% Similarity=-0.020 Sum_probs=50.1
Q ss_pred ceEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEcc-------CCCCccCCCccceEEeccc
Q 012235 319 RIGLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTL-------NQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d-------~~~Lpf~d~sFDlVis~~~ 388 (467)
.+|+=+|+|. |.++..|++.|..|+.++-+. .+...+.+. +....++ ....+-....+|+|+..--
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD----YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 3688889884 468888888888888755542 233344442 1100010 0001112357898875422
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
-.+ ...++..+...+++++.++.
T Consensus 82 ~~~------~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 82 TTA------NALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCC------hHhHHHHHhhhcCCCCEEEE
Confidence 111 24677788888999987554
Done!